Citrus Sinensis ID: 005594

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------69
Protein Sequence
MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKCKTQISFNIGAARIGITSC
Secondary Structure (PSIPRED)
cHHHHHHHHcHHccccccHHHHHHccccccccccccHHHcHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEcccccccHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHccccEEEcccccHHHHHHHHHHccccEEEEcccccccccHHHHHHcHHHHHHHccccccccccccccEEEEcccccccccccccccccEEcccccccccccccccccccccccccccEEEEEccccccccHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccccHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHHHcccEEHHcccHHHHHHHHHHcccEEEEEcccccccccccEEEEccccEEEEEEccccccccccEEEEEEccccccHHHHHHHHHHHHcccccEEEccccccccccccccccccccEEEEEEcccccccccEEEEHHHHHHHHccc
Coil and Loop (DISEMBL)
mawvekdvsngrerdpvqdngflkgpqslpgtsgspvavgstlkgfegkdaLSYANILRSRNKFVDALALYEIVLEkdsgnveahIGKGICLqmqnmgrlafdsfseavkldpqnacahthcgilykdegrLVEAAESYHKalsadpsykpAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALkidphyapayynLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERClavspnfeiaKNNMAIALTDlgtkvklegdinQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLgviykdrdnLDKAVECYQMALSikpnfsqslNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQClkidpdsrnagqNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYtswdntkdperplvigyvspdyfthSVSYFIeaplvyhdyqnYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTghtannklgmmacqpapvqvtwigypnttglptidyritdsladppetkQKHVEELIrlpecflcytpspeagpvcptpaltngfitfgsfnnlakcktqiSFNIGAARIGITSC
Flexible Loop (DISEMBL)
mawvekdvsngrerdpvqdngflkgpqslpgtsgSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAlsadpsykPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSikpnfsqslNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTswdntkdperPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKadaktirfrekvmkkggiwrdiygiDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKCKTQIsfnigaarigitsc
Low Complexity Region (SEG)
MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGkmdaaaemiekaiaaNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYkvvvysavvkadakTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKCKTQISFNIGAARIGITSC
Disordered region (IsUnstruct)
******************************************LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSL*********HVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKCKTQISFNIGAARIGI***
Disordered Region (DISOPRED)
MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKCKTQISFNIGAARIGITSC
Disordered Region (DISEMBL)
*************RDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKCKTQISFNIGAARIGITSC
Disordered Region (DISPRO)
MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKCKTQISFNIGAARIGITSC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKCKTQISFNIGAARIGITSC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	689	2.2.26 [Sep-21-2011]
O82039	932	Probable UDP-N-acetylgluc	N/A	no	0.979	0.724	0.875	0.0
Q8RVB2	931	Probable UDP-N-acetylgluc	N/A	no	0.979	0.725	0.866	0.0
Q96301	914	Probable UDP-N-acetylgluc	yes	no	0.972	0.733	0.845	0.0
O82422	944	Probable UDP-N-acetylgluc	N/A	no	0.912	0.666	0.836	0.0
Q8LP10	918	Probable UDP-N-acetylgluc	N/A	no	0.918	0.689	0.835	0.0
Q6YZI0	927	Probable UDP-N-acetylgluc	yes	no	0.950	0.706	0.796	0.0
Q9M8Y0	977	Probable UDP-N-acetylgluc	no	no	0.814	0.574	0.282	4e-61
P56558	1036	UDP-N-acetylglucosamine--	yes	no	0.821	0.546	0.262	2e-55
Q27HV0	1046	UDP-N-acetylglucosamine--	yes	no	0.821	0.541	0.262	2e-55
P81436	1046	UDP-N-acetylglucosamine--	yes	no	0.821	0.541	0.262	2e-55

>sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1

 Score = 1263 bits (3269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/675 (87%), Positives = 634/675 (93%)

Query: 1   MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
           MAW EKDV NG+E D + +NGFLKG QS   + GSPV +    K FEGKDA++YANILRS
Sbjct: 1   MAWTEKDVENGKESDSLGNNGFLKGVQSSSDSKGSPVRISPVKKSFEGKDAITYANILRS 60

Query: 61  RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
           RNKFVDALA+YE VL+KDSG++E+ IGKGICLQMQNMGRLAF+SF+EA+KLDPQNACA T
Sbjct: 61  RNKFVDALAIYESVLQKDSGSIESLIGKGICLQMQNMGRLAFESFAEAIKLDPQNACALT 120

Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
           HCGILYKDEGRLVEAAESY KAL ADPSYKPAAECLAIVLTD+GTSLKLAGN+Q+GIQKY
Sbjct: 121 HCGILYKDEGRLVEAAESYQKALKADPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKY 180

Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
           YEA+KID HYAPAYYNLGVVYSE+MQYD AL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGD 240

Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
           LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300

Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
           DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA
Sbjct: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360

Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
           L+IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+ISL
Sbjct: 361 LTIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNISL 420

Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
           AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG DDKL+EAHRDWG RFMRLY QY SWDN
Sbjct: 421 AIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGSDDKLYEAHRDWGWRFMRLYQQYNSWDN 480

Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
           +KDPER LVIGYVSPDYFTHSVSYFIEAPL YHDY NYKVV+YSAVVKADAKT RFR+KV
Sbjct: 481 SKDPERQLVIGYVSPDYFTHSVSYFIEAPLAYHDYANYKVVIYSAVVKADAKTNRFRDKV 540

Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
           +KKGG+WRDIYGIDEKKV++M+REDK+DI++ELTGHTANNKLGMMAC+PAPVQVTWIGYP
Sbjct: 541 LKKGGVWRDIYGIDEKKVSSMIREDKVDIMIELTGHTANNKLGMMACRPAPVQVTWIGYP 600

Query: 601 NTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFI 660
           NTTGLPTIDYRITDS+ADPP TKQKHVEEL+RLP+ FLCYTPSPEAGPV P PALTNGF+
Sbjct: 601 NTTGLPTIDYRITDSMADPPSTKQKHVEELVRLPDSFLCYTPSPEAGPVSPAPALTNGFV 660

Query: 661 TFGSFNNLAKCKTQI 675
           TFGSFNNLAK   ++
Sbjct: 661 TFGSFNNLAKITPKV 675

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.
Petunia hybrida (taxid: 4102)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -

>sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1

 Score = 1204 bits (3116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/675 (86%), Positives = 629/675 (93%)

Query: 1   MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
           MAW EKDV NG+E + + +NGFLKG QS  G+ GSP  +    K FE KDA++YANILRS
Sbjct: 1   MAWTEKDVENGKESESLGNNGFLKGGQSSSGSKGSPGRISHVKKIFEDKDAITYANILRS 60

Query: 61  RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
           RNKFVDALA+YE VLEKDS ++E+ IGKGICLQMQN GRLAF+SFSEA+K+DPQNACA T
Sbjct: 61  RNKFVDALAIYESVLEKDSKSIESLIGKGICLQMQNTGRLAFESFSEAIKVDPQNACALT 120

Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
           HCGILYKDEGRLVEAAESY KAL ADPSY PAAECLAIVLTD+GTSLKLAGNTQ+GIQKY
Sbjct: 121 HCGILYKDEGRLVEAAESYEKALKADPSYTPAAECLAIVLTDIGTSLKLAGNTQEGIQKY 180

Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
           YEA+KID HYAPAYYNLGVVYSE+MQYD AL CYEKAALERPMYAEAYCNMGVI+KNRGD
Sbjct: 181 YEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAALERPMYAEAYCNMGVIFKNRGD 240

Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
           LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL YNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALCYNWHYA 300

Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
           DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ+A
Sbjct: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLA 360

Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
           LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+ISL
Sbjct: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNISL 420

Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
           AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG DDKL+EAHRDWG+RFM+LY QYTSWDN
Sbjct: 421 AIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGTDDKLYEAHRDWGRRFMKLYPQYTSWDN 480

Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
           +K PERPLVIGYVSPDYFTHSVSYFIEAPL +HDY NYKVVVYS+VVKADAKT RFR+KV
Sbjct: 481 SKVPERPLVIGYVSPDYFTHSVSYFIEAPLAHHDYTNYKVVVYSSVVKADAKTNRFRDKV 540

Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
           MKKGG+WRDIYGIDEKKV++M+REDK+DI+VELTGHTANNKLG MAC+PAPVQVTWIGYP
Sbjct: 541 MKKGGLWRDIYGIDEKKVSSMIREDKVDIMVELTGHTANNKLGTMACRPAPVQVTWIGYP 600

Query: 601 NTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFI 660
           NTTGLPTIDYRITD++ADPP  KQKHVEEL+RLP  FLCYTPSPEAGPVCP PAL+NGF+
Sbjct: 601 NTTGLPTIDYRITDAMADPPNAKQKHVEELVRLPNSFLCYTPSPEAGPVCPAPALSNGFV 660

Query: 661 TFGSFNNLAKCKTQI 675
           TFGSFNNLAK   ++
Sbjct: 661 TFGSFNNLAKITPKV 675

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis thaliana GN=SPY PE=1 SV=1

 Score = 1199 bits (3103), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/675 (84%), Positives = 615/675 (91%), Gaps = 5/675 (0%)

Query: 1   MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
           M  +E D    RER PV +NGF  G +S   ++G    +  + K  +G D LSYANILR+
Sbjct: 1   MVGLEDDTE--RERSPVVENGFSNGSRSSSSSAG---VLSPSRKVTQGNDTLSYANILRA 55

Query: 61  RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
           RNKF DALALYE +LEKDS NVEAHIGKGICLQ QN G LAFD FSEA++LDP NACA T
Sbjct: 56  RNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALT 115

Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
           HCGIL+K+EGRLVEAAESY KAL AD SYKPAAECLAIVLTDLGTSLKLAGNTQ+GIQKY
Sbjct: 116 HCGILHKEEGRLVEAAESYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKY 175

Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
           YEALKIDPHYAPAYYNLGVVYSE+MQYD AL CYEKAALERPMYAEAYCNMGVIYKNRGD
Sbjct: 176 YEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGD 235

Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
           LE AI CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD+ QGVAYYKKALYYNWHYA
Sbjct: 236 LEMAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDVTQGVAYYKKALYYNWHYA 295

Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
           DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV+YKDRDNLDKAVECYQMA
Sbjct: 296 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVLYKDRDNLDKAVECYQMA 355

Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
           LSIKPNF+QSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEA+NNLGVLYRDAG+I++
Sbjct: 356 LSIKPNFAQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAFNNLGVLYRDAGNITM 415

Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
           AIDAYE+CLKIDPDSRNAGQNRLLAMNYINEG DDKLFEAHRDWG RF RL+ QYTSWDN
Sbjct: 416 AIDAYEECLKIDPDSRNAGQNRLLAMNYINEGLDDKLFEAHRDWGWRFTRLHPQYTSWDN 475

Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
            KDPERP+ IGY+SPD+FTHSVSYFIEAPL +HDY  YKVVVYSAVVKADAKT RFR+KV
Sbjct: 476 LKDPERPITIGYISPDFFTHSVSYFIEAPLTHHDYTKYKVVVYSAVVKADAKTYRFRDKV 535

Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
           +KKGG+W+DIYGIDEKK+A+MVREDKIDILVELTGHTANNKLG MAC+PAPVQVTWIGYP
Sbjct: 536 LKKGGVWKDIYGIDEKKIASMVREDKIDILVELTGHTANNKLGTMACRPAPVQVTWIGYP 595

Query: 601 NTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFI 660
           NTTGLPT+DYRITDSLADPP+TKQK VEEL+RLP+CFLCYTPSPEAGPVCPTPAL+NGF+
Sbjct: 596 NTTGLPTVDYRITDSLADPPDTKQKQVEELVRLPDCFLCYTPSPEAGPVCPTPALSNGFV 655

Query: 661 TFGSFNNLAKCKTQI 675
           TFGSFNNLAK   ++
Sbjct: 656 TFGSFNNLAKITPKV 670

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway and circadian clock. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Acts as a repressor of GA signaling pathway to inhibit hypocotyl elongation. Functions with GIGANTEA (GI) in pathways controlling flowering, circadian cotyledon movements and hypocotyl elongation. Acts as a light-regulated promoter of elongation via its interaction with GI. Acts as an activator of cytokinin signaling. Required with SEC for gamete and seed development. Its OGT activity has been proved in vitro but not in vivo.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|O82422|SPY_HORVU Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Hordeum vulgare GN=SPY PE=2 SV=1

 Score = 1127 bits (2914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/629 (83%), Positives = 579/629 (92%)

Query: 47  EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
           EG DAL YANILRSRNKF DAL LY  VL+KD  NVEA IGKGICLQ Q++ R A D F+
Sbjct: 33  EGTDALRYANILRSRNKFADALQLYTTVLDKDGANVEALIGKGICLQAQSLPRQALDCFT 92

Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
           EAVK+DP+NACA THCG++YKDEG LVEAAE+Y KA SADPSYK A+E LAIVLTDLGTS
Sbjct: 93  EAVKVDPKNACALTHCGMIYKDEGHLVEAAEAYQKARSADPSYKAASEFLAIVLTDLGTS 152

Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
           LKLAGNT+DGIQKY EAL++D HYAPAYYNLGVVYSE+MQ+D AL CYEKAALERP+YAE
Sbjct: 153 LKLAGNTEDGIQKYCEALEVDSHYAPAYYNLGVVYSEMMQFDVALTCYEKAALERPLYAE 212

Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286
           AYCNMGVIYKNRG+L++AIACY+RCL +SPNFEIAKNNMAIALTDLGTKVK+EGDINQGV
Sbjct: 213 AYCNMGVIYKNRGELDAAIACYDRCLTISPNFEIAKNNMAIALTDLGTKVKIEGDINQGV 272

Query: 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346
           AYYKKAL+YNWHYADAMYNLGVAYGEML F+MAIVFYELA HFNP CAEACNNLGVIYKD
Sbjct: 273 AYYKKALFYNWHYADAMYNLGVAYGEMLNFEMAIVFYELALHFNPRCAEACNNLGVIYKD 332

Query: 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406
           RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYN
Sbjct: 333 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAYN 392

Query: 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
           NLGVLYRDAGSI+L++ AYE+CL+IDPDSRNAGQNRLLAMNYI+EG DDKL++AHR+WGK
Sbjct: 393 NLGVLYRDAGSITLSVQAYERCLQIDPDSRNAGQNRLLAMNYIDEGSDDKLYDAHREWGK 452

Query: 467 RFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAV 526
           RFM+LY+QYTSWDN K  +RPLVIGYVSPD+FTHSVSYF+EAPL +HDY   KVVVYS V
Sbjct: 453 RFMKLYAQYTSWDNPKVADRPLVIGYVSPDFFTHSVSYFVEAPLTHHDYTKCKVVVYSGV 512

Query: 527 VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMA 586
           VKADAKT+RF++KV+KKGG+WRDIYGIDEKKVA +VREDK+DILVELTGHTANNKLG MA
Sbjct: 513 VKADAKTLRFKDKVLKKGGVWRDIYGIDEKKVATLVREDKVDILVELTGHTANNKLGTMA 572

Query: 587 CQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEA 646
           C+PAP+QVTWIGYPNTTGLP IDYRITDSLAD P T QKHVEEL+RLPE FLCYTPSPEA
Sbjct: 573 CRPAPIQVTWIGYPNTTGLPAIDYRITDSLADSPNTNQKHVEELVRLPESFLCYTPSPEA 632

Query: 647 GPVCPTPALTNGFITFGSFNNLAKCKTQI 675
           GPVCPTPA++NGFITFGSFNNLAK   ++
Sbjct: 633 GPVCPTPAISNGFITFGSFNNLAKITPKV 661

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q8LP10|SPY_EUSER Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Eustoma exaltatum subsp. russellianum GN=SPY PE=2 SV=1

 Score = 1126 bits (2913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/655 (83%), Positives = 586/655 (89%), Gaps = 22/655 (3%)

Query: 21  GFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSG 80
           G LKG QS   + GSPV      K  EGK+A++YA ILRSRNKFVDALA+YE  LEKDS 
Sbjct: 12  GLLKGVQSSSDSKGSPVK-----KSLEGKEAITYAKILRSRNKFVDALAIYE--LEKDSK 64

Query: 81  NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
           NVEAHIGKGICLQ QN G LAFD FSEA++LDP NACA THCGILYKDEGRLVEAA SY 
Sbjct: 65  NVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILYKDEGRLVEAA-SYQ 123

Query: 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200
           KAL ADPSYKPAAECLA VL DLGTSLK  GNTQ+GIQKYYEA+KIDPHYAPA YNLGVV
Sbjct: 124 KALQADPSYKPAAECLATVLNDLGTSLK--GNTQEGIQKYYEAVKIDPHYAPACYNLGVV 181

Query: 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260
           YSE+MQYD AL CYE+AA E P YA+AYCN G+IYKNRGDL         CLAVSPNFEI
Sbjct: 182 YSEMMQYDVALSCYERAATESPTYADAYCNTGIIYKNRGDL---------CLAVSPNFEI 232

Query: 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320
           AKNNM IALTDLGTK KLEGDI+QGVAYYKKALYYNWHY+DAMYNLGVAYGEMLKFDMAI
Sbjct: 233 AKNNMGIALTDLGTKEKLEGDIDQGVAYYKKALYYNWHYSDAMYNLGVAYGEMLKFDMAI 292

Query: 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380
           +F ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ ALSIKPNFSQSLNNLGVV+TV
Sbjct: 293 IFDELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQKALSIKPNFSQSLNNLGVVFTV 352

Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
           QGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+I LAI+AYEQCLKIDPDSRNAGQ
Sbjct: 353 QGKMDAAASMIEKAIVANPTYAEAYNNLGVLYRDAGNIFLAIEAYEQCLKIDPDSRNAGQ 412

Query: 441 NRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTH 500
           NRLLAMNYINEG DD+L+EAHRDWG RFMRLYSQYTSWDN KDPERPLVIGY SPD+F  
Sbjct: 413 NRLLAMNYINEGADDRLYEAHRDWGGRFMRLYSQYTSWDNPKDPERPLVIGYGSPDHF-- 470

Query: 501 SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAA 560
            +SYFIEAPL+YHDY+N+KVV YSAVVKADAKT RFRE+V+KKGGIWRDIYGIDEKKVA+
Sbjct: 471 -LSYFIEAPLLYHDYENFKVVTYSAVVKADAKTNRFRERVLKKGGIWRDIYGIDEKKVAS 529

Query: 561 MVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPP 620
           M+REDK+DIL+ELTGHTANNKLGMMAC+PAP+QVTWIGYPNTTGLPTIDYRITDSLADP 
Sbjct: 530 MIREDKVDILIELTGHTANNKLGMMACRPAPIQVTWIGYPNTTGLPTIDYRITDSLADPL 589

Query: 621 ETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKCKTQI 675
           +TKQKHVEELI+LP CFLCYTPSPEAGPV PTPAL+NGFITFGSFNNLAK   ++
Sbjct: 590 DTKQKHVEELIQLPACFLCYTPSPEAGPVSPTPALSNGFITFGSFNNLAKITPKV 644

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins (By similarity). May function as a negative regulator of GA signal transduction during vernalization, inhibiting adventitious shoot elongation during vernalization.

Eustoma exaltatum subsp. russellianum (taxid: 52518)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q6YZI0|SPY_ORYSJ Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Oryza sativa subsp. japonica GN=SPY PE=3 SV=1

 Score = 1119 bits (2895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/669 (79%), Positives = 593/669 (88%), Gaps = 14/669 (2%)

Query: 7   DVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVD 66
           D S GRE + V           +P  +G  V     L   +GKD L YANILRSRNKF +
Sbjct: 7   DSSEGRESNGV-----------VPERNGGAVPAKQQL---DGKDTLRYANILRSRNKFAE 52

Query: 67  ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126
           AL LY  VLEKD  NVEA IGKGICLQ Q++   A + F+EAV++DP NACA T+CG++Y
Sbjct: 53  ALQLYNNVLEKDEANVEALIGKGICLQAQSLPMQAIECFNEAVRIDPGNACALTYCGMIY 112

Query: 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186
           KDEG LVEAAE+Y KA +ADPSYKPAAE LAIVLTDLGTSLKLAGNT++GIQKY EAL++
Sbjct: 113 KDEGHLVEAAEAYQKARNADPSYKPAAEFLAIVLTDLGTSLKLAGNTEEGIQKYCEALEV 172

Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
           D HYAPAYYNLGVVYSE+MQ+D AL CYEKAALERP+YAEAYCNMGVIYKNRG+LE+AIA
Sbjct: 173 DSHYAPAYYNLGVVYSEMMQFDLALTCYEKAALERPLYAEAYCNMGVIYKNRGELEAAIA 232

Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
           CYERCL +SPNFEIAKNNMAIALTDLGTKVK+EGDINQGVAYYKKAL+YNWHYADAMYNL
Sbjct: 233 CYERCLTISPNFEIAKNNMAIALTDLGTKVKIEGDINQGVAYYKKALFYNWHYADAMYNL 292

Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
           GVAYGEML F+MAIVFYELA HFNP CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN
Sbjct: 293 GVAYGEMLNFEMAIVFYELALHFNPRCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 352

Query: 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426
           FSQSLNNLGVVYTVQGKMDAA+ MI+KAI AN TYAEAYNNLGVLYRDAGSI+ A+ AYE
Sbjct: 353 FSQSLNNLGVVYTVQGKMDAASSMIQKAIFANSTYAEAYNNLGVLYRDAGSITSAVQAYE 412

Query: 427 QCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPER 486
           +CL+IDPDSRNAGQNRLLA+NYI+EG DDKL++AHR+WGKRF++LY QYTSWDN K  +R
Sbjct: 413 KCLQIDPDSRNAGQNRLLALNYIDEGFDDKLYQAHREWGKRFLKLYPQYTSWDNPKVADR 472

Query: 487 PLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGI 546
           PLVIGYVSPDYFTHSVSYFIEAPL +HDY NYKVVVYS VVKADAKT+RF++KV+KKGG+
Sbjct: 473 PLVIGYVSPDYFTHSVSYFIEAPLAHHDYSNYKVVVYSGVVKADAKTLRFKDKVLKKGGL 532

Query: 547 WRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLP 606
           WRDIYGIDEKKVA++VREDK+DILVELTGHTANNKLG MAC+PAP+QVTWIGYPNTTGLP
Sbjct: 533 WRDIYGIDEKKVASLVREDKVDILVELTGHTANNKLGTMACRPAPIQVTWIGYPNTTGLP 592

Query: 607 TIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFN 666
           TIDYRITDSLADPP+T QKHVEEL+RLPE FLCY+PSPEAGPVCPTPA+ NGFITFGSFN
Sbjct: 593 TIDYRITDSLADPPDTTQKHVEELVRLPESFLCYSPSPEAGPVCPTPAILNGFITFGSFN 652

Query: 667 NLAKCKTQI 675
           NLAK   ++
Sbjct: 653 NLAKITPKV 661

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1

 Score =  236 bits (603), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 179/633 (28%), Positives = 282/633 (44%), Gaps = 72/633 (11%)

Query: 98  GRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
           GRL  A     +A+ L+P    AH++ G L K +G + EA   Y +A+   P++      
Sbjct: 169 GRLSEATQCCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTF------ 222

Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
            AI  ++L      +G+    +Q Y EA+K+ P +  AY NLG VY  L +   A+ CY+
Sbjct: 223 -AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQ 281

Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
            A   RP  A A+ N+  IY  +G L+ AI  Y++ L+  P F  A NN+  AL D+G  
Sbjct: 282 HALQMRPNSAMAFGNIASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGR- 340

Query: 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
                 +++ V  Y + L    ++  AM NLG  Y E      A   ++         + 
Sbjct: 341 ------VDEAVRCYNQCLALQPNHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSA 394

Query: 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395
             NNL +IYK + N   A+ CY   L I P  + +L N G  Y   G++  A +    AI
Sbjct: 395 PFNNLAIIYKQQGNYSDAISCYNEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAI 454

Query: 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD- 454
              PT AEA+ NL   Y+D+G +  AI +Y+Q L + PD   A  N L  +  +    D 
Sbjct: 455 NFRPTMAEAHANLASAYKDSGHVEAAITSYKQALLLRPDFPEATCNLLHTLQCVCCWEDR 514

Query: 455 DKLFEAHRDWGKR---------------------------FMRLYSQYTSWDNTKDPERP 487
            K+F       +R                             R Y+ + S   ++    P
Sbjct: 515 SKMFAEVESIIRRQINMSVLPSVQPFHAIAYPIDPILALEISRKYAAHCSIIASRFGLPP 574

Query: 488 LV-----------------IGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKAD 530
                              IGYVS D+  H +S+ + +    H+ +N +V  Y+  + A+
Sbjct: 575 FTHPAGLPVKREGGFKRLRIGYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYA--LSAN 632

Query: 531 AKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPA 590
             T  +R+++  +   + D+  +    +A ++ +DKI IL+ L G+T   +  + A QPA
Sbjct: 633 DNT-EWRQRIQSEAEHFLDVSAMSSDAIAKIINQDKIQILINLNGYTKGARNEIFAMQPA 691

Query: 591 PVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCY--------TP 642
           P+QV+++G+P TTG   IDY +TD    P +    + E+L+ LP C+             
Sbjct: 692 PIQVSYMGFPGTTGATYIDYLVTDEFVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNQDVL 751

Query: 643 SPEAGPVCPTPALTNGFITFGSFNNLAKCKTQI 675
            P + P      L      F  FN L K   +I
Sbjct: 752 DPNSKPKRSDYGLPEDKFIFACFNQLYKMDPEI 784

O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1

 Score =  218 bits (554), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 164/625 (26%), Positives = 282/625 (45%), Gaps = 59/625 (9%)

Query: 56  NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
           N+ + R +  +A+  Y   L      ++ +I     L        A  ++  A++ +P  
Sbjct: 87  NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 146

Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
            C  +  G L K  GRL EA   Y KA+   P++       A+  ++LG      G    
Sbjct: 147 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIWL 199

Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
            I  + +A+ +DP++  AY NLG V  E   +D A+  Y +A    P +A  + N+  +Y
Sbjct: 200 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 259

Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
             +G ++ AI  Y R + + P+F  A  N+A AL       K +G + +    Y  AL  
Sbjct: 260 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL-------KEKGSVAEAEDCYNTALRL 312

Query: 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
              +AD++ NL     E    + A+  Y  A    P  A A +NL  + + +  L +A+ 
Sbjct: 313 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 372

Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415
            Y+ A+ I P F+ + +N+G        +  A +   +AI  NP +A+A++NL  +++D+
Sbjct: 373 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 432

Query: 416 GSISLAIDAYEQCLKIDPDSRNA--------------------------------GQNRL 443
           G+I  AI +Y   LK+ PD  +A                                 +NRL
Sbjct: 433 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQLEKNRL 492

Query: 444 LAMN-------YINEGHDDKLFEAHRDWGKRFMRLYSQ--YTSWDNTKDPERPLVIGYVS 494
            +++        ++ G    + E H +     + +  +  Y    + K  +  L +GYVS
Sbjct: 493 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVS 552

Query: 495 PDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID 554
            D+  H  S+ +++    H+   ++V  Y+  +  D  T  FR KVM +   + D+  I 
Sbjct: 553 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYA--LSPDDGT-NFRVKVMAEANHFIDLSQIP 609

Query: 555 -EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRIT 613
              K A  + +D I ILV + G+T   +  + A +PAP+Q  W+GYP T+G   +DY IT
Sbjct: 610 CNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIIT 669

Query: 614 DSLADPPETKQKHVEELIRLPECFL 638
           D    P E  +++ E+L  +P  F 
Sbjct: 670 DQETSPAEVAEQYSEKLAYMPHTFF 694

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1

 Score =  217 bits (553), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 164/625 (26%), Positives = 282/625 (45%), Gaps = 59/625 (9%)

Query: 56  NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
           N+ + R +  +A+  Y   L      ++ +I     L        A  ++  A++ +P  
Sbjct: 97  NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 156

Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
            C  +  G L K  GRL EA   Y KA+   P++       A+  ++LG      G    
Sbjct: 157 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIWL 209

Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
            I  + +A+ +DP++  AY NLG V  E   +D A+  Y +A    P +A  + N+  +Y
Sbjct: 210 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 269

Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
             +G ++ AI  Y R + + P+F  A  N+A AL       K +G + +    Y  AL  
Sbjct: 270 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL-------KEKGSVAEAEDCYNTALRL 322

Query: 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
              +AD++ NL     E    + A+  Y  A    P  A A +NL  + + +  L +A+ 
Sbjct: 323 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 382

Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415
            Y+ A+ I P F+ + +N+G        +  A +   +AI  NP +A+A++NL  +++D+
Sbjct: 383 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 442

Query: 416 GSISLAIDAYEQCLKIDPDSRNA--------------------------------GQNRL 443
           G+I  AI +Y   LK+ PD  +A                                 +NRL
Sbjct: 443 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 502

Query: 444 LAMN-------YINEGHDDKLFEAHRDWGKRFMRLYSQ--YTSWDNTKDPERPLVIGYVS 494
            +++        ++ G    + E H +     + +  +  Y    + K  +  L +GYVS
Sbjct: 503 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVS 562

Query: 495 PDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID 554
            D+  H  S+ +++    H+   ++V  Y+  +  D  T  FR KVM +   + D+  I 
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYA--LSPDDGT-NFRVKVMAEANHFIDLSQIP 619

Query: 555 -EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRIT 613
              K A  + +D I ILV + G+T   +  + A +PAP+Q  W+GYP T+G   +DY IT
Sbjct: 620 CNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIIT 679

Query: 614 DSLADPPETKQKHVEELIRLPECFL 638
           D    P E  +++ E+L  +P  F 
Sbjct: 680 DQETSPAEVAEQYSEKLAYMPHTFF 704

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2

 Score =  217 bits (553), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 164/625 (26%), Positives = 282/625 (45%), Gaps = 59/625 (9%)

Query: 56  NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
           N+ + R +  +A+  Y   L      ++ +I     L        A  ++  A++ +P  
Sbjct: 97  NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 156

Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
            C  +  G L K  GRL EA   Y KA+   P++       A+  ++LG      G    
Sbjct: 157 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIWL 209

Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
            I  + +A+ +DP++  AY NLG V  E   +D A+  Y +A    P +A  + N+  +Y
Sbjct: 210 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 269

Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
             +G ++ AI  Y R + + P+F  A  N+A AL       K +G + +    Y  AL  
Sbjct: 270 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL-------KEKGSVAEAEDCYNTALRL 322

Query: 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
              +AD++ NL     E    + A+  Y  A    P  A A +NL  + + +  L +A+ 
Sbjct: 323 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 382

Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415
            Y+ A+ I P F+ + +N+G        +  A +   +AI  NP +A+A++NL  +++D+
Sbjct: 383 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 442

Query: 416 GSISLAIDAYEQCLKIDPDSRNA--------------------------------GQNRL 443
           G+I  AI +Y   LK+ PD  +A                                 +NRL
Sbjct: 443 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 502

Query: 444 LAMN-------YINEGHDDKLFEAHRDWGKRFMRLYSQ--YTSWDNTKDPERPLVIGYVS 494
            +++        ++ G    + E H +     + +  +  Y    + K  +  L +GYVS
Sbjct: 503 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVS 562

Query: 495 PDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID 554
            D+  H  S+ +++    H+   ++V  Y+  +  D  T  FR KVM +   + D+  I 
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYA--LSPDDGT-NFRVKVMAEANHFIDLSQIP 619

Query: 555 -EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRIT 613
              K A  + +D I ILV + G+T   +  + A +PAP+Q  W+GYP T+G   +DY IT
Sbjct: 620 CNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIIT 679

Query: 614 DSLADPPETKQKHVEELIRLPECFL 638
           D    P E  +++ E+L  +P  F 
Sbjct: 680 DQETSPAEVAEQYSEKLAYMPHTFF 704

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Oryctolagus cuniculus (taxid: 9986)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	689
255579381	930	o-linked n-acetylglucosamine transferase	0.979	0.725	0.896	0.0
75318818	932	RecName: Full=Probable UDP-N-acetylgluco	0.979	0.724	0.875	0.0
224140075	917	predicted protein [Populus trichocarpa]	0.979	0.736	0.883	0.0
224088480	934	predicted protein [Populus trichocarpa]	0.979	0.722	0.877	0.0
225440809	914	PREDICTED: probable UDP-N-acetylglucosam	0.976	0.736	0.884	0.0
256772634	916	putative SPINDLY protein [Rosa lucieae]	0.978	0.735	0.876	0.0
356500631	928	PREDICTED: probable UDP-N-acetylglucosam	0.975	0.724	0.871	0.0
195423963	934	SPINDLY [Sinningia speciosa]	0.978	0.721	0.868	0.0
356534448	929	PREDICTED: probable UDP-N-acetylglucosam	0.975	0.723	0.853	0.0
449526080	925	PREDICTED: probable UDP-N-acetylglucosam	0.979	0.729	0.857	0.0

>gi|255579381|ref|XP_002530535.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] gi|223529939|gb|EEF31867.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]

 Score = 1275 bits (3300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/676 (89%), Positives = 639/676 (94%), Gaps = 1/676 (0%)

Query: 1   MAWVEKDVSNGRERDPVQDNGFLKGPQS-LPGTSGSPVAVGSTLKGFEGKDALSYANILR 59
           MAW EK+  NG+E  P++DNGFLKG Q   P  SGSPVAV + LKG E KD+LSYANILR
Sbjct: 1   MAWTEKNNGNGKEGGPIEDNGFLKGTQEPSPSASGSPVAVAAGLKGIEEKDSLSYANILR 60

Query: 60  SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119
           SRNKFVDALA+YE VLEKDSGNVEA+IGKGICLQMQNMGRLAFDSF+EA+KLDPQNACA 
Sbjct: 61  SRNKFVDALAIYESVLEKDSGNVEAYIGKGICLQMQNMGRLAFDSFAEAIKLDPQNACAL 120

Query: 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179
           THCGILYK+EGRLVEAAESY KAL ADP YKPAAECL+IVLTDLGTSLKL+GNTQ+GIQK
Sbjct: 121 THCGILYKEEGRLVEAAESYQKALRADPLYKPAAECLSIVLTDLGTSLKLSGNTQEGIQK 180

Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
           YYEALKIDPHYAPAYYNLGVVYSE+MQYDTAL CYEKAALERPMYAEAYCNMGVIYKNRG
Sbjct: 181 YYEALKIDPHYAPAYYNLGVVYSEMMQYDTALNCYEKAALERPMYAEAYCNMGVIYKNRG 240

Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 299
           DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG+AYYKKALYYNWHY
Sbjct: 241 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGIAYYKKALYYNWHY 300

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
           ADAMYNLGVAYGEMLKFD AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 
Sbjct: 301 ADAMYNLGVAYGEMLKFDNAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQT 360

Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
           ALSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+I 
Sbjct: 361 ALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIMANPTYAEAYNNLGVLYRDAGNIP 420

Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
           +AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEGHD+KLFEAHRDWG+RFMRLY QYT WD
Sbjct: 421 MAINAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDEKLFEAHRDWGRRFMRLYPQYTMWD 480

Query: 480 NTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREK 539
           N KD +RPLVIGYVSPDYFTHSVSYFIEAPLVYHDY NYKVVVYSAVVKADAKTIRFREK
Sbjct: 481 NPKDLDRPLVIGYVSPDYFTHSVSYFIEAPLVYHDYANYKVVVYSAVVKADAKTIRFREK 540

Query: 540 VMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGY 599
           V+K+GGIWRDIYGIDEKKVA+MVRED +DILVELTGHTANNKLGMMAC+PAP+QVTWIGY
Sbjct: 541 VLKQGGIWRDIYGIDEKKVASMVREDNVDILVELTGHTANNKLGMMACRPAPIQVTWIGY 600

Query: 600 PNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGF 659
           PNTTGLPTIDYRITDSLADP +TKQKHVEEL+RLP+CFLCYTPSPEAGPVCPTPAL NGF
Sbjct: 601 PNTTGLPTIDYRITDSLADPRDTKQKHVEELVRLPDCFLCYTPSPEAGPVCPTPALANGF 660

Query: 660 ITFGSFNNLAKCKTQI 675
           ITFGSFNNLAK   ++
Sbjct: 661 ITFGSFNNLAKITPKV 676

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75318818|sp|O82039.1|SPY_PETHY RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; AltName: Full=PhSPY gi|3319682|emb|CAA76834.1| SPINDLY protein [Petunia x hybrida]

 Score = 1263 bits (3269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/675 (87%), Positives = 634/675 (93%)

Query: 1   MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
           MAW EKDV NG+E D + +NGFLKG QS   + GSPV +    K FEGKDA++YANILRS
Sbjct: 1   MAWTEKDVENGKESDSLGNNGFLKGVQSSSDSKGSPVRISPVKKSFEGKDAITYANILRS 60

Query: 61  RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
           RNKFVDALA+YE VL+KDSG++E+ IGKGICLQMQNMGRLAF+SF+EA+KLDPQNACA T
Sbjct: 61  RNKFVDALAIYESVLQKDSGSIESLIGKGICLQMQNMGRLAFESFAEAIKLDPQNACALT 120

Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
           HCGILYKDEGRLVEAAESY KAL ADPSYKPAAECLAIVLTD+GTSLKLAGN+Q+GIQKY
Sbjct: 121 HCGILYKDEGRLVEAAESYQKALKADPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKY 180

Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
           YEA+KID HYAPAYYNLGVVYSE+MQYD AL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGD 240

Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
           LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300

Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
           DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA
Sbjct: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360

Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
           L+IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+ISL
Sbjct: 361 LTIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNISL 420

Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
           AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG DDKL+EAHRDWG RFMRLY QY SWDN
Sbjct: 421 AIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGSDDKLYEAHRDWGWRFMRLYQQYNSWDN 480

Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
           +KDPER LVIGYVSPDYFTHSVSYFIEAPL YHDY NYKVV+YSAVVKADAKT RFR+KV
Sbjct: 481 SKDPERQLVIGYVSPDYFTHSVSYFIEAPLAYHDYANYKVVIYSAVVKADAKTNRFRDKV 540

Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
           +KKGG+WRDIYGIDEKKV++M+REDK+DI++ELTGHTANNKLGMMAC+PAPVQVTWIGYP
Sbjct: 541 LKKGGVWRDIYGIDEKKVSSMIREDKVDIMIELTGHTANNKLGMMACRPAPVQVTWIGYP 600

Query: 601 NTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFI 660
           NTTGLPTIDYRITDS+ADPP TKQKHVEEL+RLP+ FLCYTPSPEAGPV P PALTNGF+
Sbjct: 601 NTTGLPTIDYRITDSMADPPSTKQKHVEELVRLPDSFLCYTPSPEAGPVSPAPALTNGFV 660

Query: 661 TFGSFNNLAKCKTQI 675
           TFGSFNNLAK   ++
Sbjct: 661 TFGSFNNLAKITPKV 675

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140075|ref|XP_002323412.1| predicted protein [Populus trichocarpa] gi|222868042|gb|EEF05173.1| predicted protein [Populus trichocarpa]

 Score = 1259 bits (3258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/679 (88%), Positives = 633/679 (93%), Gaps = 4/679 (0%)

Query: 1   MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
           MAW E D  + RE++ ++DNGFLKG Q   GTSGSPV      KGFEGKDALSYANILRS
Sbjct: 1   MAWTENDAGSVREKELIEDNGFLKGSQPSTGTSGSPVVSSPVQKGFEGKDALSYANILRS 60

Query: 61  RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
           RNKF DALALYE VLEKDSG VEA+IGKGICLQMQNMGRLAFDSF+EA+KLDPQNACA T
Sbjct: 61  RNKFADALALYESVLEKDSGIVEAYIGKGICLQMQNMGRLAFDSFAEAIKLDPQNACALT 120

Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
           HCGILYKDEGRL+EAAESYHKAL AD SYKPA+ECLAIVLTDLGTSLKL+GNTQ+GIQKY
Sbjct: 121 HCGILYKDEGRLLEAAESYHKALKADLSYKPASECLAIVLTDLGTSLKLSGNTQEGIQKY 180

Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
           YEALK+DPHYAPAYYNLGVVYSE+MQYDTAL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEALKVDPHYAPAYYNLGVVYSEMMQYDTALSCYEKAAMERPMYAEAYCNMGVIYKNRGD 240

Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
           LESAIACYERCLAVSPNFEIAKNNMAIALTD GTKVKLEGDI+QGVAYYKKALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDFGTKVKLEGDISQGVAYYKKALYYNWHYA 300

Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ-- 358
           DAMYNLGVAYGEMLKF+MAIVFYELAF+FNPHCAEACNNLGVIYKDRDNLDKAVECYQ  
Sbjct: 301 DAMYNLGVAYGEMLKFEMAIVFYELAFNFNPHCAEACNNLGVIYKDRDNLDKAVECYQAN 360

Query: 359 --MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
              +LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG
Sbjct: 361 SDTSLSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIMANPTYAEAYNNLGVLYRDAG 420

Query: 417 SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYT 476
           +IS+AI AYEQCL+IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG+RFMRLY QYT
Sbjct: 421 NISMAISAYEQCLEIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGRRFMRLYPQYT 480

Query: 477 SWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRF 536
           SWDN K P+RPLVIGYVSPDYFTHSVSYFIEAPLVYH Y NYKVVVYSAVVK DAKT RF
Sbjct: 481 SWDNPKVPDRPLVIGYVSPDYFTHSVSYFIEAPLVYHVYANYKVVVYSAVVKPDAKTNRF 540

Query: 537 REKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTW 596
           +EKV+K+GGIWRDIYGIDEKKVA MVREDK+DILVELTGHTANNKLGMMAC+PAPVQVTW
Sbjct: 541 KEKVLKRGGIWRDIYGIDEKKVAIMVREDKVDILVELTGHTANNKLGMMACRPAPVQVTW 600

Query: 597 IGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALT 656
           IGYPNTTGLPTIDYRITDS ADPP+TKQKHVEELIRLPECFLCY PSPEAGPV PTPAL+
Sbjct: 601 IGYPNTTGLPTIDYRITDSFADPPDTKQKHVEELIRLPECFLCYIPSPEAGPVAPTPALS 660

Query: 657 NGFITFGSFNNLAKCKTQI 675
           NGFITFGSFNNLAK   ++
Sbjct: 661 NGFITFGSFNNLAKITPKV 679

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088480|ref|XP_002308458.1| predicted protein [Populus trichocarpa] gi|222854434|gb|EEE91981.1| predicted protein [Populus trichocarpa]

 Score = 1258 bits (3256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/675 (87%), Positives = 627/675 (92%)

Query: 1   MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
           MAW E D  N RE++P  DNGFLKG Q  P  SGS V      KGF+GKDALSYANILRS
Sbjct: 1   MAWTENDAGNVREKEPTGDNGFLKGSQPSPDPSGSRVGSSPAQKGFDGKDALSYANILRS 60

Query: 61  RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
           RNKF DALALYE  LE DSGNVEA+IGKGICLQMQNM RLAFDSF+EA+KLDP+NACA T
Sbjct: 61  RNKFADALALYESALENDSGNVEAYIGKGICLQMQNMERLAFDSFAEAIKLDPENACALT 120

Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
           HCGILYKDEGRL+EAAESYHKAL ADPSYKPA+ECLAIVLTDLGTSLKL+GNTQ+GIQKY
Sbjct: 121 HCGILYKDEGRLLEAAESYHKALKADPSYKPASECLAIVLTDLGTSLKLSGNTQEGIQKY 180

Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
           Y+ALK+DPHYAPAYYNLGVVYSE+MQYDTAL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YDALKVDPHYAPAYYNLGVVYSEMMQYDTALSCYEKAAIERPMYAEAYCNMGVIYKNRGD 240

Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
           LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV YYKKALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVTYYKKALYYNWHYA 300

Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
           DAMYNLGVAYGEMLKF+MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ  
Sbjct: 301 DAMYNLGVAYGEMLKFEMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQAT 360

Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
           LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRD G+I++
Sbjct: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIMANPTYAEAYNNLGVLYRDVGNITM 420

Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
           AI AYEQCL+IDPDSRNAGQNRLLAMNYINEGHDDKLF+AHR+WG+RFMRLY Q+TSWDN
Sbjct: 421 AISAYEQCLEIDPDSRNAGQNRLLAMNYINEGHDDKLFQAHREWGRRFMRLYPQFTSWDN 480

Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
            K PERPLVIGYVSPDYFTHSVSYFIEAPLVYHDY NY VVVYSAVVK+DAKT RFREKV
Sbjct: 481 PKVPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYANYMVVVYSAVVKSDAKTNRFREKV 540

Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
           +KKGG+WRDIYGIDEKKVA+M+REDK+DILVELTGHTANNKLGMMAC+PAPVQVTWIGYP
Sbjct: 541 LKKGGMWRDIYGIDEKKVASMIREDKVDILVELTGHTANNKLGMMACRPAPVQVTWIGYP 600

Query: 601 NTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFI 660
           NTTGLPTIDYRITDS  DPP TKQKHVEEL+RLPECFLCY PSPEAGPV PTPAL+NGFI
Sbjct: 601 NTTGLPTIDYRITDSFTDPPHTKQKHVEELVRLPECFLCYIPSPEAGPVTPTPALSNGFI 660

Query: 661 TFGSFNNLAKCKTQI 675
           TFGSFNNLAK   ++
Sbjct: 661 TFGSFNNLAKITPKV 675

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440809|ref|XP_002281883.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Vitis vinifera] gi|297740152|emb|CBI30334.3| unnamed protein product [Vitis vinifera]

 Score = 1246 bits (3224), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/675 (88%), Positives = 631/675 (93%), Gaps = 2/675 (0%)

Query: 1   MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
           MAW EK+V NGR+R+PV  NGF K   S   +S S  + G   K FEGKDALSYANILRS
Sbjct: 1   MAWTEKEVGNGRDREPVGGNGFSK--VSQTSSSTSSTSPGCLPKKFEGKDALSYANILRS 58

Query: 61  RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
           RNKF DALA+YE +LEKD+GNVEAHIGKGICLQMQNMGRLAF+SFSEA++ DPQN CA T
Sbjct: 59  RNKFADALAMYENILEKDNGNVEAHIGKGICLQMQNMGRLAFESFSEAIRQDPQNLCALT 118

Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
           H GILYKDEGRL+EAAESY KAL  D SYKPAAECLAIVLTDLGTSLKLAGNTQ+GIQKY
Sbjct: 119 HLGILYKDEGRLLEAAESYDKALRIDSSYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKY 178

Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
           YEALKIDPHYAPAYYNLGVVYSE+MQYDTAL CYEKAALERPMYAEAYCNMGVI+KNRGD
Sbjct: 179 YEALKIDPHYAPAYYNLGVVYSEMMQYDTALSCYEKAALERPMYAEAYCNMGVIFKNRGD 238

Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
           LESAI CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA
Sbjct: 239 LESAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 298

Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
           DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ+A
Sbjct: 299 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLA 358

Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
           LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+IS+
Sbjct: 359 LSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIVANPTYAEAYNNLGVLYRDAGNISM 418

Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
           AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG+DDKLFEAHRDWG+RFMRLY QYTSWDN
Sbjct: 419 AIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGNDDKLFEAHRDWGRRFMRLYPQYTSWDN 478

Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
            KDPERPLV+GYVSPDYFTHSVSYFIEAPLV HDY NYKVVVYSAVVKADAKTIRFR+KV
Sbjct: 479 PKDPERPLVVGYVSPDYFTHSVSYFIEAPLVNHDYANYKVVVYSAVVKADAKTIRFRDKV 538

Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
           +K+GG+WRDIYGIDEKKVA+MVREDK+DILVELTGHTANNKLGMMAC+PAPVQVTWIGYP
Sbjct: 539 LKRGGVWRDIYGIDEKKVASMVREDKVDILVELTGHTANNKLGMMACRPAPVQVTWIGYP 598

Query: 601 NTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFI 660
           NTTGLPTIDYRITDSLAD P+T QKHVEEL+RLPECFLCY PSPEAGPV PTPAL+NGFI
Sbjct: 599 NTTGLPTIDYRITDSLADLPDTSQKHVEELVRLPECFLCYMPSPEAGPVSPTPALSNGFI 658

Query: 661 TFGSFNNLAKCKTQI 675
           TFGSFNNLAK   ++
Sbjct: 659 TFGSFNNLAKITPKV 673

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|256772634|emb|CAX46402.1| putative SPINDLY protein [Rosa lucieae]

 Score = 1243 bits (3217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/678 (87%), Positives = 633/678 (93%), Gaps = 4/678 (0%)

Query: 1   MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKG---FEGKDALSYANI 57
           MAW +KD  NG+E DPV +NGFL   Q  P TSGS +A G+T +G   FE K+ +SYANI
Sbjct: 1   MAWTDKDGCNGKEGDPVVENGFLNCSQPSPSTSGSLLA-GATPEGGKSFEVKETISYANI 59

Query: 58  LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC 117
           LRSRNKF DAL+LYE VL+KD+ NVEAHIGKGICLQM+NMGRLAFDSF+EA+KLD +NAC
Sbjct: 60  LRSRNKFSDALSLYETVLDKDARNVEAHIGKGICLQMKNMGRLAFDSFTEAIKLDSENAC 119

Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
           A THCGILYKDEGRL EAAESY KAL+ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDG+
Sbjct: 120 ALTHCGILYKDEGRLREAAESYQKALNADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGL 179

Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
           QKYYEALK DPHYAPAYYNLGVVYSE+MQ+DTAL CYEKAALERPMY EAYCNMGVIYKN
Sbjct: 180 QKYYEALKTDPHYAPAYYNLGVVYSEMMQFDTALTCYEKAALERPMYTEAYCNMGVIYKN 239

Query: 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297
           RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI+QG+AYYKKALYYNW
Sbjct: 240 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIDQGIAYYKKALYYNW 299

Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
           HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY
Sbjct: 300 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 359

Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417
           QMALSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+
Sbjct: 360 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGN 419

Query: 418 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTS 477
           IS+AIDAYEQCLKIDPDSRNAGQNRLLAMNYI+EG DDKLF AHRDWG+RFMRL SQ+TS
Sbjct: 420 ISMAIDAYEQCLKIDPDSRNAGQNRLLAMNYIHEGQDDKLFVAHRDWGRRFMRLSSQHTS 479

Query: 478 WDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFR 537
           WDN KDPERPLVIGYVSPDYFTHSVSYFIEAPL +H+Y  YKVVVYSAVVKADAKTIRFR
Sbjct: 480 WDNLKDPERPLVIGYVSPDYFTHSVSYFIEAPLAHHEYAKYKVVVYSAVVKADAKTIRFR 539

Query: 538 EKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWI 597
           +KV+KKGGIWRDIYGIDEKKVA++VREDKIDILVELTGHTANNKLG MAC+PAPVQVTWI
Sbjct: 540 DKVLKKGGIWRDIYGIDEKKVASIVREDKIDILVELTGHTANNKLGTMACRPAPVQVTWI 599

Query: 598 GYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTN 657
           GYPNTTGLP IDYRITDSLAD P++KQKHVEEL+RLPECFLCYTPSPEAGPV PTPAL+N
Sbjct: 600 GYPNTTGLPAIDYRITDSLADSPDSKQKHVEELVRLPECFLCYTPSPEAGPVSPTPALSN 659

Query: 658 GFITFGSFNNLAKCKTQI 675
           GFITFGSFNNLAK   ++
Sbjct: 660 GFITFGSFNNLAKITPKV 677

Source: Rosa lucieae

Species: Rosa lucieae

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500631|ref|XP_003519135.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] gi|401721241|gb|AFP99901.1| putative UDP-N-acetylglucosamin [Glycine max]

 Score = 1229 bits (3180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 589/676 (87%), Positives = 628/676 (92%), Gaps = 4/676 (0%)

Query: 1   MAWVE-KDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILR 59
           MAW E  D +NGRE+  V +NGFLK   S P + GS    GS  K  EGKD +SYANILR
Sbjct: 1   MAWTEDSDGNNGREK-LVGENGFLK--VSEPSSDGSVGDGGSVSKRCEGKDDVSYANILR 57

Query: 60  SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119
           SRNKFVDALALYE VLE D GNVEA IGKGICLQMQNMGRLAF+SF+EA++LDPQNACA 
Sbjct: 58  SRNKFVDALALYERVLESDGGNVEALIGKGICLQMQNMGRLAFESFAEAIRLDPQNACAL 117

Query: 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179
           THCGILYKDEGRLVEAAESY KAL  DPSYK AAECLAIVLTD+GT++KLAGNTQ+GIQK
Sbjct: 118 THCGILYKDEGRLVEAAESYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQEGIQK 177

Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
           Y+EALKIDPHYAPAYYNLGVVYSE+MQYD AL  YEKAA ERPMYAEAYCNMGVIYKNRG
Sbjct: 178 YFEALKIDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAASERPMYAEAYCNMGVIYKNRG 237

Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 299
           DLE+AI CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI+ GVA+YKKALYYNWHY
Sbjct: 238 DLEAAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIDHGVAFYKKALYYNWHY 297

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
           ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ+
Sbjct: 298 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQL 357

Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
           AL IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG I+
Sbjct: 358 ALGIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDIA 417

Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
           LAI+AYEQCLKIDPDSRNAGQNRLLAMNYI+EG+DDKLFEAHRDWG+RFMRLYSQ+TSWD
Sbjct: 418 LAINAYEQCLKIDPDSRNAGQNRLLAMNYIDEGNDDKLFEAHRDWGRRFMRLYSQFTSWD 477

Query: 480 NTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREK 539
           N+KDPERPLVIGYVSPDYFTHSVSYFIEAPL+YHDY NYKVVVYSAVVKADAKTIRFREK
Sbjct: 478 NSKDPERPLVIGYVSPDYFTHSVSYFIEAPLLYHDYTNYKVVVYSAVVKADAKTIRFREK 537

Query: 540 VMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGY 599
           V+KKGGIW+DIYG DEKKVA MVRED++DIL+ELTGHTANNKLGMMAC+PAPVQVTWIGY
Sbjct: 538 VLKKGGIWKDIYGTDEKKVADMVREDQVDILIELTGHTANNKLGMMACRPAPVQVTWIGY 597

Query: 600 PNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGF 659
           PNTTGLPTIDYRITDS ADPPETKQKHVEEL+RLP+CFLCYTPSPEAGPVCPTPAL+NGF
Sbjct: 598 PNTTGLPTIDYRITDSQADPPETKQKHVEELVRLPDCFLCYTPSPEAGPVCPTPALSNGF 657

Query: 660 ITFGSFNNLAKCKTQI 675
           +TFGSFNNLAK   ++
Sbjct: 658 VTFGSFNNLAKITPKV 673

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195423963|gb|ACF96937.1| SPINDLY [Sinningia speciosa]

 Score = 1220 bits (3157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/675 (86%), Positives = 620/675 (91%), Gaps = 1/675 (0%)

Query: 1   MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
           MA   K+V + + RD + D   LK  Q  P    SP+  G   K  EGKDALSYANILRS
Sbjct: 1   MASPGKNVGSVKGRDSLDDQASLKEGQPSPDIR-SPLGSGPIKKSLEGKDALSYANILRS 59

Query: 61  RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
           RNKFVDALA+YE VLEKD  +VEAHIGKGICLQMQN+GRLA +SF+EAV+LDPQNACA T
Sbjct: 60  RNKFVDALAVYETVLEKDGESVEAHIGKGICLQMQNLGRLACESFAEAVRLDPQNACALT 119

Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
           HCGILYKDEGRL EAAE Y KAL ADPSYK AAECLAIVLTDLGTSLKLAGNTQ+GIQKY
Sbjct: 120 HCGILYKDEGRLAEAAEMYQKALKADPSYKLAAECLAIVLTDLGTSLKLAGNTQEGIQKY 179

Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
           YEA+KIDPHYAPAYYNLGVVYSE+MQYDTAL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 180 YEAIKIDPHYAPAYYNLGVVYSEMMQYDTALNCYEKAAIERPMYAEAYCNMGVIYKNRGD 239

Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
           LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN GVAYYKKALYYNWHYA
Sbjct: 240 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINHGVAYYKKALYYNWHYA 299

Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
           DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA
Sbjct: 300 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 359

Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
           LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+ISL
Sbjct: 360 LSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIVANPTYAEAYNNLGVLYRDAGNISL 419

Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
           AI+AYEQCLKIDPDSRNAGQNRLLAMNYINE +DDKL+EAHRDWG+RFMRL+ QYTSWDN
Sbjct: 420 AIEAYEQCLKIDPDSRNAGQNRLLAMNYINETNDDKLYEAHRDWGRRFMRLFPQYTSWDN 479

Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
            KDPERPLVIGYVSPDYFTHSVSYFIEAPL+YHD+ NYKVVVYSAVVKADAKT RFR+KV
Sbjct: 480 IKDPERPLVIGYVSPDYFTHSVSYFIEAPLIYHDHVNYKVVVYSAVVKADAKTNRFRDKV 539

Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
           +K GG WRD+YGIDEKKVA+MVREDKIDILVELTGHTANNKLGMMAC+PAPVQVTWIGYP
Sbjct: 540 LKHGGTWRDVYGIDEKKVASMVREDKIDILVELTGHTANNKLGMMACRPAPVQVTWIGYP 599

Query: 601 NTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFI 660
           NTTGLP IDYRITD+LAD P+TKQKHVEEL+RLP CFLCYTPSPEAGPV PTPA +NGFI
Sbjct: 600 NTTGLPAIDYRITDALADSPDTKQKHVEELVRLPGCFLCYTPSPEAGPVSPTPAQSNGFI 659

Query: 661 TFGSFNNLAKCKTQI 675
           TFGSFNNLAK   ++
Sbjct: 660 TFGSFNNLAKITPRV 674

Source: Sinningia speciosa

Species: Sinningia speciosa

Genus: Sinningia

Family: Gesneriaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534448|ref|XP_003535766.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max]

 Score = 1214 bits (3141), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/677 (85%), Positives = 626/677 (92%), Gaps = 5/677 (0%)

Query: 1   MAWVE-KDVSNGRERDPVQDNGFLKGPQSLP-GTSGSPVAVGSTLKGFEGKDALSYANIL 58
           MAW E  D +NGRE+  V +NGFL   +  P G+ G  V+V +    +EGKD + +ANIL
Sbjct: 1   MAWTEDNDENNGREKKMVGENGFLIVSEPSPAGSGGDGVSVSTR---YEGKDDVLFANIL 57

Query: 59  RSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118
           RSRNKFVDALALYE VLE D GNVEA +GKGICLQMQNMGRLAF+SF+EA+++DPQNACA
Sbjct: 58  RSRNKFVDALALYERVLESDGGNVEALVGKGICLQMQNMGRLAFESFAEAIRMDPQNACA 117

Query: 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178
            THCGILYKDEG LVEAAESY KAL  DPSYK AAECLAIVLTD+GT++KLAGNTQ+GIQ
Sbjct: 118 LTHCGILYKDEGCLVEAAESYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQEGIQ 177

Query: 179 KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238
           KY+EALKIDPHYAPAYYNLGVVYSE+MQYD AL  YEKAA ERPMYAEAYCNMGVIYKNR
Sbjct: 178 KYFEALKIDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAASERPMYAEAYCNMGVIYKNR 237

Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
           GDLE+AI CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN+GVA+YKKAL+YNWH
Sbjct: 238 GDLEAAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINRGVAFYKKALHYNWH 297

Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
           YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ
Sbjct: 298 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 357

Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418
           +AL IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG I
Sbjct: 358 LALGIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDI 417

Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSW 478
           SLAI+AYEQCLKIDPDSRNAGQNRLLAMNYI+EG+DDKLFEAHRDWG+RFMRLY Q+TSW
Sbjct: 418 SLAINAYEQCLKIDPDSRNAGQNRLLAMNYIDEGNDDKLFEAHRDWGRRFMRLYPQFTSW 477

Query: 479 DNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFRE 538
           DN+KDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDY NYKV+VYSAVVKADAKTIRFRE
Sbjct: 478 DNSKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYTNYKVIVYSAVVKADAKTIRFRE 537

Query: 539 KVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIG 598
           KV+KKGGIW+DIYG DEKKVA MVR+D++DIL+ELTGHTANNKLGM+AC+PAPVQVTWIG
Sbjct: 538 KVLKKGGIWKDIYGTDEKKVADMVRQDQVDILIELTGHTANNKLGMLACRPAPVQVTWIG 597

Query: 599 YPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNG 658
           YPNTTGLPTIDYRITDS ADPPETKQKHVEEL+RLP+ FLCYTPSPEAGPVCPTPAL+NG
Sbjct: 598 YPNTTGLPTIDYRITDSRADPPETKQKHVEELVRLPDSFLCYTPSPEAGPVCPTPALSNG 657

Query: 659 FITFGSFNNLAKCKTQI 675
           F+TFGSFNNLAK   ++
Sbjct: 658 FVTFGSFNNLAKITPKV 674

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526080|ref|XP_004170042.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Cucumis sativus]

 Score = 1212 bits (3136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/675 (85%), Positives = 626/675 (92%)

Query: 1   MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
           M   EKD S+G+E  PV++NGFL+G QS   +S S V++ S  K  EGKD L +ANILRS
Sbjct: 1   MERTEKDDSSGKEIVPVRENGFLQGSQSSSQSSSSLVSIDSAEKKVEGKDGLFFANILRS 60

Query: 61  RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
           RNKF DAL LYE VLEKD  N+EAHIGKGICLQMQNM + AF+SF+EA++LDPQNACA T
Sbjct: 61  RNKFSDALVLYEKVLEKDGDNLEAHIGKGICLQMQNMIKPAFESFAEAIRLDPQNACAFT 120

Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
           HCGILYK+EGRLVEAAESY KAL  DPSY+PAAECLA+VLTDLGTSLKL+GN+QDGIQKY
Sbjct: 121 HCGILYKEEGRLVEAAESYQKALRVDPSYRPAAECLAVVLTDLGTSLKLSGNSQDGIQKY 180

Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
           YEALKIDPHYAPAYYNLGVVYSE+MQYDTAL CYEKAA ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEALKIDPHYAPAYYNLGVVYSEMMQYDTALNCYEKAAFERPMYAEAYCNMGVIYKNRGD 240

Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
           LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK+ALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKRALYYNWHYA 300

Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
           DAMYNLGVAYGEMLKFD AIVFYELAFHFNPHCAEACNNLGVIYKD+DNLDKAVECYQ+A
Sbjct: 301 DAMYNLGVAYGEMLKFDTAIVFYELAFHFNPHCAEACNNLGVIYKDQDNLDKAVECYQLA 360

Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
           LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVL+RDAG+I +
Sbjct: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAYNNLGVLHRDAGNIEM 420

Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
           A+DAYE+CLKIDPDSRNAGQNRLLAMNY +EGH+DKL+EAHRDWG+RFMRLY QYTSWDN
Sbjct: 421 AVDAYERCLKIDPDSRNAGQNRLLAMNYTDEGHEDKLYEAHRDWGRRFMRLYPQYTSWDN 480

Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
            KDPERPLVIGYVSPDYFTHSVSYF+EAPLV+HDY NYKVVVYSAVVKADAKTIRFR+KV
Sbjct: 481 PKDPERPLVIGYVSPDYFTHSVSYFVEAPLVHHDYANYKVVVYSAVVKADAKTIRFRDKV 540

Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
           +K+GG+WRDIYGIDEKKVA+MVREDK+DILVELTGHTANNKLGMMAC+PAPVQVTWIGYP
Sbjct: 541 LKQGGVWRDIYGIDEKKVASMVREDKVDILVELTGHTANNKLGMMACRPAPVQVTWIGYP 600

Query: 601 NTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFI 660
           NTTGLPTIDYRITD+L DPP TKQKHVEEL+RLPECFLCYTPSPEAG V   PAL+NGFI
Sbjct: 601 NTTGLPTIDYRITDALTDPPNTKQKHVEELVRLPECFLCYTPSPEAGSVSSAPALSNGFI 660

Query: 661 TFGSFNNLAKCKTQI 675
           TFGSFNNLAK   ++
Sbjct: 661 TFGSFNNLAKITPKV 675

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82422	SPY_HORVU	2, ., 4, ., 1, ., -	0.8362	0.9129	0.6663	N/A	no
O82039	SPY_PETHY	2, ., 4, ., 1, ., -	0.8755	0.9796	0.7242	N/A	no
Q8LP10	SPY_EUSER	2, ., 4, ., 1, ., -	0.8351	0.9187	0.6895	N/A	no
Q96301	SPY_ARATH	2, ., 4, ., 1, ., -	0.8459	0.9724	0.7330	yes	no
Q6YZI0	SPY_ORYSJ	2, ., 4, ., 1, ., -	0.7967	0.9506	0.7065	yes	no
Q8RVB2	SPY_SOLLC	2, ., 4, ., 1, ., -	0.8666	0.9796	0.7250	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XVI.2407.1 hypothetical protein (905 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	689
COG3914	620	COG3914, Spy, Predicted O-linked N-acetylglucosami	8e-46
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-23
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-22
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-21
pfam13844	468	pfam13844, Glyco_transf_41, Glycosyl transferase f	9e-21
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-20
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	5e-20
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	9e-20
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-19
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-18
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-17
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	9e-17
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-15
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	3e-14
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-14
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-14
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	9e-14
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-13
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-11
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-11
pfam13414	69	pfam13414, TPR_11, TPR repeat	6e-11
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-10
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	3e-10
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-10
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	4e-10
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	4e-10
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	5e-10
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	3e-09
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-09
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	5e-09
PRK02603	172	PRK02603, PRK02603, photosystem I assembly protein	1e-08
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	2e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-08
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	5e-08
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	6e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	9e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-07
PRK02603	172	PRK02603, PRK02603, photosystem I assembly protein	4e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	5e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	6e-07
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	6e-07
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	7e-07
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	8e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-06
CHL00033	168	CHL00033, ycf3, photosystem I assembly protein Ycf	1e-06
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	2e-06
PRK12370	553	PRK12370, PRK12370, invasion protein regulator; Pr	2e-06
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	3e-06
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	4e-06
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	5e-06
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	8e-06
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	8e-06
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	1e-05
COG4785	297	COG4785, NlpI, Lipoprotein NlpI, contains TPR repe	1e-05
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-05
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	2e-05
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	2e-05
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	3e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	5e-05
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	5e-05
COG0790	292	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily	7e-05
COG4976	287	COG4976, COG4976, Predicted methyltransferase (con	8e-05
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	1e-04
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-04
TIGR03939	800	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g	1e-04
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	1e-04
COG2956	389	COG2956, COG2956, Predicted N-acetylglucosaminyl t	1e-04
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	1e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-04
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	2e-04
COG2956	389	COG2956, COG2956, Predicted N-acetylglucosaminyl t	2e-04
pfam10373	276	pfam10373, EST1_DNA_bind, Est1 DNA/RNA binding dom	2e-04
PRK11189	296	PRK11189, PRK11189, lipoprotein NlpI; Provisional	2e-04
PRK02603	172	PRK02603, PRK02603, photosystem I assembly protein	3e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	3e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	3e-04
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	4e-04
COG4785	297	COG4785, NlpI, Lipoprotein NlpI, contains TPR repe	4e-04
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	4e-04
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	5e-04
PRK11447	1157	PRK11447, PRK11447, cellulose synthase subunit Bcs	7e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.001
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.001
CHL00033	168	CHL00033, ycf3, photosystem I assembly protein Ycf	0.001
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.001
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.002
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	0.002
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.003
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	0.003
COG4235	287	COG4235, COG4235, Cytochrome c biogenesis factor [	0.003
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.004
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	0.004

>gnl|CDD|226428 COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

 Score =  172 bits (437), Expect = 8e-46
 Identities = 100/383 (26%), Positives = 153/383 (39%), Gaps = 54/383 (14%)

Query: 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY-QMALSIKPNFSQSLNNLG 375
            +A +   +    NP    A  NL    +       A+    ++A  + P+ ++ L +L 
Sbjct: 84  TLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLI 143

Query: 376 VVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL--------- 420
             Y +       G+   A   +E+A+   P Y      L    ++  S            
Sbjct: 144 RFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWPEEAPTNLLSQ 203

Query: 421 ------AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQ 474
                         L  DP    A  N+LL +   N     +                  
Sbjct: 204 LALFLGIYGFSLAYLADDPLKNLAIANQLLKILSQNAPELVR------------------ 245

Query: 475 YTSWDNTKDPE-RPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYS-AVVKADAK 532
           +   D       + L +GY+S D  +H+V + +     YHD   ++V  YS      DA 
Sbjct: 246 FPIRDENIKRNGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDAL 305

Query: 533 TIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPV 592
             R    V K    W  I  +D+ ++A  +R D IDILV+L GHT + +  + A +PAP+
Sbjct: 306 QERISAAVEK----WYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAPI 361

Query: 593 QVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPT 652
           QV+W+GYP TTG P +DY I+D    PP  ++ + E+L RLP    CY P     PV P 
Sbjct: 362 QVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLP---QCYQPVDGFEPVTPP 418

Query: 653 PA-----LTNGFITFGSFNNLAK 670
           P+     L    + F  FNN  K
Sbjct: 419 PSRAQLGLPEDAVVFCCFNNYFK 441

Length = 620

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score =  103 bits (259), Expect = 7e-23
 Identities = 104/418 (24%), Positives = 160/418 (38%), Gaps = 50/418 (11%)

Query: 52  LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
           L  A +  + N+F +A AL + VL  D GNV+A + KG  L       LA  ++ +A+ L
Sbjct: 163 LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL 222

Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL-AIVLTDLGTSLKLA 170
            P N         +  + G   E AE +  AL       P A  L A+V        +  
Sbjct: 223 RPNNIAVLLALATILIEAGE-FEEAEKHADALLKKAPNSPLAHYLKALV------DFQ-K 274

Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA---LGCYEKAA----LERPM 223
            N +D  +   +ALK  P Y PA    G    +L   + A   L    K A      R +
Sbjct: 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRL 334

Query: 224 YAEAYCNM---------------------------GVIYKNRGDLESAIACYERCLAVSP 256
            A     +                           G  Y   GD E A     +   + P
Sbjct: 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394

Query: 257 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 316
             E A     + ++ L       GD ++ +A  + A   +     A   L ++Y    +F
Sbjct: 395 --ENAAARTQLGISKLSQ-----GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQF 447

Query: 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376
           D A+   +      P  A   N LG IY  + +L KA E ++ ALSI+P+F  +  NL  
Sbjct: 448 DKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR 507

Query: 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
           +   +G  D A +  EK +  +P    A   L  LY   G+   A+   E+  +++P 
Sbjct: 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ 565

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 91.3 bits (227), Expect = 3e-22
 Identities = 39/100 (39%), Positives = 59/100 (59%)

Query: 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394
           EA  NLG +Y    + D+A+E Y+ AL + P+ + +  NL   Y   GK + A E  EKA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 395 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
           +  +P  A+AY NLG+ Y   G    A++AYE+ L++DP+
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 87.4 bits (217), Expect = 7e-21
 Identities = 39/99 (39%), Positives = 56/99 (56%)

Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
            L +LG      G+  + ++ Y +AL++DP  A AYYNL   Y +L +Y+ AL  YEKA 
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
              P  A+AY N+G+ Y   G  E A+  YE+ L + PN
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41

 Score = 95.6 bits (238), Expect = 9e-21
 Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 4/151 (2%)

Query: 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIW 547
           L IGYVS D+  H  S+ +++    H+    +V  Y+  +  D  T  FR KVM +   +
Sbjct: 1   LRIGYVSSDFGNHPTSHLMQSIPGMHNRSKVEVFCYA--LSPDDGT-NFRSKVMAESEHF 57

Query: 548 RDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLP 606
            D+  I    K A  + +D I ILV + G+T   +  + A +PAP+QV W+GYP T+G  
Sbjct: 58  VDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGAT 117

Query: 607 TIDYRITDSLADPPETKQKHVEELIRLPECF 637
            +DY ITDS+  P E   ++ E+L  +P  F
Sbjct: 118 FMDYIITDSVTSPMELADQYSEKLAYMPHTF 148

This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. Length = 468

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 96.3 bits (240), Expect = 1e-20
 Identities = 104/440 (23%), Positives = 148/440 (33%), Gaps = 83/440 (18%)

Query: 63  KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-------- 114
            F  A        E D  N  A    GI    Q     A      A +LDP+        
Sbjct: 378 DFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLL 437

Query: 115 --------------------------NACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
                                     NA  H   G +Y  +G L +A E++ KALS +P 
Sbjct: 438 ILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD 497

Query: 149 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208
           + PAA  LA +  D+       GN  D IQ++ + L IDP    A   L  +Y      +
Sbjct: 498 FFPAAANLARI--DIQE-----GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550

Query: 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
            A+   EKAA   P   E    +   Y  +G L+ A+A        +P      +  A  
Sbjct: 551 EAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-----DSPEAWL 605

Query: 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328
           +  LG      GD+N+ V+ +KK L      A A+  L  AY  M  +  AI   + A  
Sbjct: 606 M--LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE 663

Query: 329 FNPHCAEACNNLGVIYKDRDNLD----------------------------------KAV 354
             P   EA   L  +       +                                   A+
Sbjct: 664 LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAI 723

Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
           + Y+ AL   P+ SQ+   L       G    A + +E  +  +P  A     L  LY  
Sbjct: 724 QAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLA 782

Query: 415 AGSISLAIDAYEQCLKIDPD 434
                 AI  Y+  +K  PD
Sbjct: 783 QKDYDKAIKHYQTVVKKAPD 802

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 90.7 bits (223), Expect = 5e-20
 Identities = 78/283 (27%), Positives = 124/283 (43%), Gaps = 13/283 (4%)

Query: 177 IQKYYEALKIDPHYAPAYYNLGV-VYSELMQYDTALGCYEKAALERP--MYAEAYCNMGV 233
           +    EAL      A A    G+ +   L +   AL   E+A    P    A     + +
Sbjct: 8   LAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLAL 67

Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
                G LE A+   E+ L +         N+A AL +LG  ++  G   + +   +KAL
Sbjct: 68  ALLKLGRLEEALELLEKALEL-----ELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122

Query: 294 -YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDN 349
                           A  E+  ++ A+  YE A   +P     AEA   LG + +    
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182

Query: 350 LDKAVECYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
            ++A+E  + AL + P+  +++L NLG++Y   GK + A E  EKA+  +P  AEA  NL
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNL 242

Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 451
            +L  + G    A++A E+ L++DPD  N G   LL +    E
Sbjct: 243 ALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAEALE 285

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 94.0 bits (234), Expect = 9e-20
 Identities = 96/415 (23%), Positives = 150/415 (36%), Gaps = 20/415 (4%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKG-ICLQMQNMGRLAFDSFSEAVKLDP 113
           A IL    +F +A    + +L+K   +  AH  K  +  Q +N    A ++  +A+K  P
Sbjct: 234 ATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYED-ARETLQDALKSAP 292

Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
           +   A    G      G L +A +  ++ L   P+   A   LA +       L+L G  
Sbjct: 293 EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQ------LRL-GRV 345

Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
            + I     AL +DP    A   LG  Y  L  ++ A     KA    P  A A   +G+
Sbjct: 346 DEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI 405

Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK-KA 292
              ++GD   AIA  E    + P    A   + ++    G   K      +        A
Sbjct: 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA 465

Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
             +N         LG  Y        A   +E A    P    A  NL  I     N D 
Sbjct: 466 SLHNL--------LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517

Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
           A++ ++  L+I P   +++  L  +Y   G  + A   +EKA   NP   E    L   Y
Sbjct: 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY 577

Query: 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 467
              G +  A+    +     PDS  A    +L    +  G  +K   + +     
Sbjct: 578 LGKGQLKKALAILNEAADAAPDSPEAWL--MLGRAQLAAGDLNKAVSSFKKLLAL 630

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 83.2 bits (206), Expect = 2e-19
 Identities = 38/99 (38%), Positives = 57/99 (57%)

Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327
           AL +LG      GD ++ + YY+KAL  +   ADA YNL  AY ++ K++ A+  YE A 
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
             +P  A+A  NLG+ Y      ++A+E Y+ AL + PN
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 90.1 bits (224), Expect = 1e-18
 Identities = 91/345 (26%), Positives = 142/345 (41%), Gaps = 18/345 (5%)

Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
           S A+ LDP +  A +  G  Y   G   +AAE   KA   DP         A   T LG 
Sbjct: 353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE-------NAAARTQLGI 405

Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
           S    G+  + I     A ++DP    A   L + Y    Q+D AL   +K   ++P  A
Sbjct: 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA 465

Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKVKLEGDINQ 284
             +  +G IY  +GDL  A   +E+ L++ P+F  A  N+A I +         EG+ + 
Sbjct: 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ--------EGNPDD 517

Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
            +  ++K L  +     A+  L   Y      + A+ + E A   NP   E    L   Y
Sbjct: 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY 577

Query: 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404
             +  L KA+     A    P+  ++   LG      G ++ A    +K +A  P  A A
Sbjct: 578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637

Query: 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA--GQNRLLAMN 447
              L   Y    + + AI + ++ L++ PD+  A  G  +LL   
Sbjct: 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA 682

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 34/100 (34%), Positives = 56/100 (56%)

Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
           +A+ NLG  Y ++  +D A+ +YE A   +P  A+A  NL   Y      ++A+E Y+ A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400
           L + P+ +++  NLG+ Y   GK + A E  EKA+  +P 
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 84.4 bits (209), Expect = 9e-17
 Identities = 80/379 (21%), Positives = 140/379 (36%), Gaps = 16/379 (4%)

Query: 52  LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
           L+ A +        +A+A  E   E +   +E  +        +   + A    +EA   
Sbjct: 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596

Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
            P +  A    G      G L +A  S+ K L+  P     A    ++L D    +K   
Sbjct: 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALAL---LLLADAYAVMK--- 649

Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231
           N    I     AL++ P    A   L  +     + ++A    +    + P  A  +   
Sbjct: 650 NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709

Query: 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
           G +Y  + D  +AI  Y + L  +P+ + A          L   +   G+  + V   + 
Sbjct: 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK--------LHRALLASGNTAEAVKTLEA 761

Query: 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 351
            L  + + A     L   Y     +D AI  Y+      P  A   NNL  +Y +  +  
Sbjct: 762 WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-P 820

Query: 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411
           +A+E  + AL + PN    L+ LG +   +G+ D A  ++ KA+   P  A    +L + 
Sbjct: 821 RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880

Query: 412 YRDAGSISLAIDAYEQCLK 430
               G  + A    ++ L 
Sbjct: 881 LLATGRKAEARKELDKLLN 899

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 72.4 bits (178), Expect = 1e-15
 Identities = 32/99 (32%), Positives = 45/99 (45%)

Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
           A  NLG +Y +L  YD AL  YEKA    P  A+AY N+   Y   G  E A+  YE+ L
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
            + P+   A  N+ +A   LG   +      + +     
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 4/157 (2%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
           A     L + Y E    ++A    + A   +P    A   L + Y+    L+KA + ++ 
Sbjct: 31  AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90

Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGS 417
           AL++ PN    LNN G     QGK + A +  E+AI     P  A +  N G+    AG 
Sbjct: 91  ALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150

Query: 418 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 454
              A     + L+IDP    +     LA  Y   G  
Sbjct: 151 FDKAEKYLTRALQIDPQRPES--LLELAELYYLRGQY 185

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 75.1 bits (185), Expect = 7e-14
 Identities = 102/440 (23%), Positives = 161/440 (36%), Gaps = 57/440 (12%)

Query: 82  VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHK 141
            E  I        +N  + A      A++ DP +A A    G +Y   G    A +   K
Sbjct: 22  PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRK 81

Query: 142 ALSADPS----------------------------YKPAAECLAIVLTDLGTSLKLAGNT 173
           ALS                                     E  A +L   G +    G  
Sbjct: 82  ALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQL 141

Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
           +   + Y +AL IDP    A   L  +     ++D A    ++     P   +A    G 
Sbjct: 142 ELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD 201

Query: 234 IYKNRGDLESAIACYERCLAVSPNF---EIAKNNMAIALTDL-GTKVKLEGDI----NQG 285
           +  + G++E A+A Y + +A+ PN     +A   + I   +    +   +  +    N  
Sbjct: 202 LLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSP 261

Query: 286 VAYYKKAL--YYNWHYADAMYNLGVA------YGEMLKFDMAIVFY----ELAF-HFN-- 330
           +A+Y KAL  +   +Y DA   L  A      Y   L    A  +     E A+ + N  
Sbjct: 262 LAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQI 321

Query: 331 ----PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386
               P+  +A   L  I      +D+A+     AL + P+   +L+ LG  Y   G  + 
Sbjct: 322 LKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381

Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
           AAE + KA   +P  A A   LG+     G  S AI   E   ++DP+   A    LL +
Sbjct: 382 AAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRAD--LLLIL 439

Query: 447 NYINEGHDDKLFEAHRDWGK 466
           +Y+  G  DK   A +   K
Sbjct: 440 SYLRSGQFDKALAAAKKLEK 459

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 67.4 bits (165), Expect = 8e-14
 Identities = 31/100 (31%), Positives = 49/100 (49%)

Query: 49  KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108
           +  L+  N+      + +AL  YE  LE D  N +A+               A + + +A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
           ++LDP NA A+ + G+ Y   G+  EA E+Y KAL  DP+
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 67.0 bits (164), Expect = 9e-14
 Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 7/95 (7%)

Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
           G LY   G   EA E Y KAL  DP         A    +L  +    G  ++ ++ Y +
Sbjct: 7   GNLYYKLGDYDEALEYYEKALELDPDN-------ADAYYNLAAAYYKLGKYEEALEDYEK 59

Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
           AL++DP  A AYYNLG+ Y +L +Y+ AL  YEKA
Sbjct: 60  ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428
           ++L NLG +Y   G  D A E  EKA+  +P  A+AY NL   Y   G    A++ YE+ 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 429 LKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 460
           L++DPD+  A     L + Y   G  ++  EA
Sbjct: 61  LELDPDNAKA--YYNLGLAYYKLGKYEEALEA 90

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 67.8 bits (166), Expect = 1e-11
 Identities = 51/251 (20%), Positives = 91/251 (36%), Gaps = 27/251 (10%)

Query: 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-----FEIAKNNMA 266
            C +++  E  +   A       Y  +   ++AI   +  L   PN     F + K  +A
Sbjct: 16  ACGDQSPEE--LIEAA-----KSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLA 68

Query: 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI-VFYEL 325
                        GD        +KAL   +     +  L  AY    KF   +      
Sbjct: 69  ------------LGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGK 116

Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
               +   AE     G+ Y     L+ A + Y+ AL+I P    +   L  +   + + D
Sbjct: 117 TLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFD 176

Query: 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
            A  +I++ + A+P   +A    G L    G+I LA+ AY + + + P++          
Sbjct: 177 EARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATI 236

Query: 446 MNYINEGHDDK 456
           +  I  G  ++
Sbjct: 237 L--IEAGEFEE 245

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 58.5 bits (142), Expect = 5e-11
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS-ISLAIDAYE 426
           +++L NLG      G  D A E  EKA+  +P  AEAY NL + Y   G     A++  E
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 427 QCLKIDP 433
           + L++DP
Sbjct: 63  KALELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 58.1 bits (141), Expect = 6e-11
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIAC 247
             A A  NLG    +L  YD A+  YEKA    P  AEAY N+ + Y   G D E A+  
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 248 YERCLAVSP 256
            E+ L + P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM-DAAAEMIE 392
           AEA  NLG       + D+A+E Y+ AL + P+ +++  NL + Y   GK  + A E +E
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 393 KAIAANP 399
           KA+  +P
Sbjct: 63  KALELDP 69

Length = 69

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 6/156 (3%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
           A A   L + Y +   +  A    E A   +P    A       Y+     D A E Y+ 
Sbjct: 35  AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRK 94

Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGVLYRDAG 416
           ALS+ PN    LNN G     QG+ + A +  E+A+A  P Y   ++   NLG+    AG
Sbjct: 95  ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAG 153

Query: 417 SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452
               A +  ++ L++DP          LA  +   G
Sbjct: 154 QFDQAEEYLKRALELDPQ--FPPALLELARLHYKAG 187

Length = 250

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL-------ERPMYAEAYCNMGVIYKNRG 239
            P  A A  NL +V   L  YD AL   EKA         + P  A A  N+  +Y   G
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 240 DLESAIACYERCLAVSPN 257
           D + A+   E+ LA+   
Sbjct: 61  DYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 11/162 (6%)

Query: 99  RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
            +A ++  +A++ DP +  A+    + Y+  G L +A +S+ +AL+ +P+          
Sbjct: 48  EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN-------GD 100

Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYE 215
           VL + GT L   G  +  +Q++ +A++ DP Y   A +  N G+   +   +D A     
Sbjct: 101 VLNNYGTFLCQQGKYEQAMQQFEQAIE-DPLYPQPARSLENAGLCALKAGDFDKAEKYLT 159

Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
           +A    P   E+   +  +Y  RG  + A A  ER       
Sbjct: 160 RALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 5/160 (3%)

Query: 147 PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206
            S        A +   L       G+ +   +   +AL+ DP    AY  L + Y +L +
Sbjct: 21  SSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE 80

Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
            + A   + +A    P   +   N G     +G  E A+  +E+ +   P +       A
Sbjct: 81  LEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE-DPLYP----QPA 135

Query: 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
            +L + G      GD ++   Y  +AL  +    +++  L
Sbjct: 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL 175

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGS 417
           P+ + +LNNL +V    G  D A E++EKA+         +P  A A NNL  LY   G 
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61

Query: 418 ISLAIDAYEQCLKIDPD 434
              A++  E+ L +   
Sbjct: 62  YDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 42/206 (20%), Positives = 75/206 (36%), Gaps = 45/206 (21%)

Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
           A+    + + Y  +GDLE A    ++ L   P+  +A   +A+    LG       ++ +
Sbjct: 31  AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG-------ELEK 83

Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
               +++AL  N +  D + N G    +  K++ A+  +E A                  
Sbjct: 84  AEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQA-----------------I 126

Query: 345 KDRDNLDKAVECYQMALSIKPNFSQ---SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401
           +D                  P + Q   SL N G+     G  D A + + +A+  +P  
Sbjct: 127 ED------------------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168

Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQ 427
            E+   L  LY   G    A    E+
Sbjct: 169 PESLLELAELYYLRGQYKDARAYLER 194

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-------PNFSQSLNNLGVVYTVQG 382
           +P  A A NNL ++ +   + D+A+E  + AL +        P  +++LNNL  +Y   G
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 383 KMDAAAEMIEKAIAANP 399
             D A E +EKA+A   
Sbjct: 61  DYDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 7/146 (4%)

Query: 72  EIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131
           +  LE D  +  A++   +  Q       A DSF  A+ L+P N     + G     +G+
Sbjct: 55  DKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK 114

Query: 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY-EALKIDPHY 190
             +A + + +A+  DP Y       A  L + G     AG+  D  +KY   AL+IDP  
Sbjct: 115 YEQAMQQFEQAIE-DPLY----PQPARSLENAGLCALKAGDF-DKAEKYLTRALQIDPQR 168

Query: 191 APAYYNLGVVYSELMQYDTALGCYEK 216
             +   L  +Y    QY  A    E+
Sbjct: 169 PESLLELAELYYLRGQYKDARAYLER 194

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 4/117 (3%)

Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA-ALERPMYAEAYC--NMGVIYKNRGDLESAIAC 247
           A  YY  G+      +Y  AL  YE+A  LE      +Y   NMG+IY + G+ + A+  
Sbjct: 35  AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEY 94

Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304
           Y + L ++P    A NN+A+     G K +  GD ++  A + KA  Y W  A  + 
Sbjct: 95  YHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY-WKQAIRLA 150

Length = 172

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 12/161 (7%)

Query: 110 KLDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168
             D   A        + Y ++G L  A E+  KAL  DP    A   LA+    L     
Sbjct: 24  TTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQL----- 78

Query: 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---A 225
             G  +     +  AL ++P+      N G    +  +Y+ A+  +E+ A+E P+Y   A
Sbjct: 79  --GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQ-AIEDPLYPQPA 135

Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
            +  N G+     GD + A     R L + P    +   +A
Sbjct: 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELA 176

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 83  EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142
           EA +  G           A + + +A++LDP NA A+ +    Y   G+  EA E Y KA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
           L  DP         A    +LG +    G  ++ ++ Y +AL++DP+
Sbjct: 61  LELDPDN-------AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 54.5 bits (129), Expect = 5e-08
 Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 11/212 (5%)

Query: 38  AVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGI-CLQMQN 96
           A+   L     +  L+   +L +  K+ +AL L E  L  D     A     +  L    
Sbjct: 85  ALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG 144

Query: 97  MGRLAFDSFSEAVKLDP---QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
               A + + +A++LDP   + A A    G L +  GR  EA E   KAL  +P     A
Sbjct: 145 DYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEA 204

Query: 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 213
                 L +LG      G  ++ ++ Y +AL++DP  A A YNL ++  EL +Y+ AL  
Sbjct: 205 ------LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEA 258

Query: 214 YEKA-ALERPMYAEAYCNMGVIYKNRGDLESA 244
            EKA  L+  +Y      + ++ +    LE A
Sbjct: 259 LEKALELDPDLYNLGLALLLLLAEALELLEKA 290

Length = 291

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 13/185 (7%)

Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
           A     L + Y E    + A    +KA    P    AY  + + Y+  G+LE A   + R
Sbjct: 31  AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90

Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA----LYYNWHYADAMYNL 306
            L ++PN     NN        GT +  +G   Q +  +++A    LY     A ++ N 
Sbjct: 91  ALTLNPNNGDVLNN-------YGTFLCQQGKYEQAMQQFEQAIEDPLYP--QPARSLENA 141

Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
           G+   +   FD A  +   A   +P   E+   L  +Y  R     A    +        
Sbjct: 142 GLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201

Query: 367 FSQSL 371
            ++SL
Sbjct: 202 TAESL 206

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 49.2 bits (118), Expect = 9e-08
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
           AEA  N+G      GD + AI  YE+ L + P+   A  N+A+A   LG   +      +
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYE------E 56

Query: 285 GVAYYKKAL 293
            +   +KAL
Sbjct: 57  ALEDLEKAL 65

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDNLDKAVEC 356
             A+A+ NLG A  ++  +D AI  YE A   +P  AEA  NL + Y K   + ++A+E 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 357 YQMALSIKP 365
            + AL + P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 15/85 (17%)

Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM-------------- 384
           N+G+IY      DKA+E Y  AL + P    +LNN+ V+Y  +G+               
Sbjct: 77  NMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALF 136

Query: 385 DAAAEMIEKAIAANP-TYAEAYNNL 408
           D AAE  ++AI   P  Y EA N L
Sbjct: 137 DKAAEYWKQAIRLAPNNYIEAQNWL 161

Length = 172

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 19/73 (26%), Positives = 33/73 (45%)

Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280
            P  A A  N+ ++ +  GD + A+   E+ L ++          A AL +L       G
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 281 DINQGVAYYKKAL 293
           D ++ + Y +KAL
Sbjct: 61  DYDEALEYLEKAL 73

Length = 78

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL-MQYDTALGCY 214
            A  L +LG +L   G+  + I+ Y +AL++DP  A AYYNL + Y +L   Y+ AL   
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 215 EKA 217
           EKA
Sbjct: 62  EKA 64

Length = 69

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 12/162 (7%)

Query: 92  LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
           LQ  +    A  +  +A++ DP    AH      Y+  G    A ESY KALS  P+   
Sbjct: 46  LQQGDY-AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN-- 102

Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYD 208
                  VL + G  L   G  ++ +Q++  AL  DP Y   +    NLG+   +  Q+D
Sbjct: 103 -----GDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFD 156

Query: 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
            A    ++A    P +  A   +  ++   GD   A    ER
Sbjct: 157 QAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198

Length = 250

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 45.5 bits (109), Expect = 7e-07
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
           A+A  NLG  Y      D+A+E Y+ AL + PN 
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 45.5 bits (109), Expect = 8e-07
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
           A+A  N+G  Y   G  + A+  YE+ L ++PN 
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYD 208
           LA  L +L   L+  G+  + ++   +AL++        P  A A  NL  +Y  L  YD
Sbjct: 4   LAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYD 63

Query: 209 TALGCYEKA 217
            AL   EKA
Sbjct: 64  EALEYLEKA 72

Length = 78

>gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 15/85 (17%)

Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK--------------M 384
           N+G+I+       KA+E Y  AL   P   Q+LNN+ V+   +G+               
Sbjct: 77  NIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136

Query: 385 DAAAEMIEKAIAANPT-YAEAYNNL 408
           D AAE  ++AIA  P  Y EA N L
Sbjct: 137 DQAAEYWKQAIALAPGNYIEAQNWL 161

Length = 168

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
           AEA  N+G  Y   GD + A+  YE+ L + PN 
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|237080 PRK12370, PRK12370, invasion protein regulator; Provisional

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 13/150 (8%)

Query: 331 PHCAEACNNLGV----IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386
           P+CA A   L +    I+  ++ + KA E    A  +  N  Q+L  LG++ T+  +   
Sbjct: 297 PYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356

Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
            + + ++A   +P  A+     G     AG +  A+    +CLK+DP    AG  +L  +
Sbjct: 357 GSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW-I 415

Query: 447 NYINEGHDDKLFEAHRDWGKRFMRLYSQYT 476
            Y + G DD +             L SQ+ 
Sbjct: 416 TYYHTGIDDAIRLG--------DELRSQHL 437

Length = 553

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
           AEA  NLG  Y    + D+A+E Y+ AL + PN 
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 5/136 (3%)

Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
             L       G+     +   +AL+ DP Y  A+      Y +L + D A   Y KA   
Sbjct: 39  LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL 98

Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280
            P   +   N G     +G  E A+  +ER LA  P +       +  L +LG      G
Sbjct: 99  APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAY----GEPSDTLENLGLCALKAG 153

Query: 281 DINQGVAYYKKALYYN 296
             +Q   Y K+AL  +
Sbjct: 154 QFDQAEEYLKRALELD 169

Length = 250

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
            G  D A   +E A+A  P  AEA   LG      G ++ A       L  DPD 
Sbjct: 10  AGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64

Length = 65

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 42.8 bits (102), Expect = 8e-06
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
           A+A  NLG  Y   G    A++ YE+ L+++P+
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 39/178 (21%), Positives = 64/178 (35%), Gaps = 5/178 (2%)

Query: 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328
           +  L T + L GD +  +A  +K+        + +   G        F  A+     A  
Sbjct: 69  IAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128

Query: 329 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388
             P   EA N LG         D+A   Y+ AL + PN     NNLG+   ++G ++ A 
Sbjct: 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE 188

Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
            ++  A  +    +    NL ++    G    A D   Q             N + A+
Sbjct: 189 TLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ-----ELLSEQAANNVAAL 241

Length = 257

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 27/130 (20%), Positives = 47/130 (36%)

Query: 140 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199
             +L+       A      +L   G +    GN  + +    +A ++ P    A+  LG 
Sbjct: 83  DSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGA 142

Query: 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
              +L ++D A   Y +A    P       N+G+    RGDLE A               
Sbjct: 143 ALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS 202

Query: 260 IAKNNMAIAL 269
             + N+A+ +
Sbjct: 203 RVRQNLALVV 212

Length = 257

>gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only]

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 14/114 (12%)

Query: 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
           GV+Y   G    A     +A+A  P   E +N LG+    AG+   A +A++  L++DP 
Sbjct: 72  GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131

Query: 435 SRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPL 488
              A  NR +A+ Y   G   KL  A  D     +  Y      D+  DP R L
Sbjct: 132 YNYAHLNRGIALYY---GGRYKL--AQDD----LLAFYQ-----DDPNDPFRSL 171

Length = 297

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 48.1 bits (114), Expect = 1e-05
 Identities = 59/301 (19%), Positives = 110/301 (36%), Gaps = 52/301 (17%)

Query: 101 AFDSFSEAV---KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157
           A  +F +A+   KL  + A A    G     +G+ +EA     K++  DP    +    A
Sbjct: 313 AARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRA 372

Query: 158 IVLTDLGTSLKLAGNTQDGIQKYYE-ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
            +  +LG          D  ++ ++ ALK++      YY+   ++    ++  A   Y+K
Sbjct: 373 SMNLELGDP--------DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424

Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
           +    P +  ++  +GV     G + S++A + RC    P      N     L D     
Sbjct: 425 SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK-- 482

Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--- 333
                       + +A+                     KFD AI   EL     P     
Sbjct: 483 ------------FDEAIE--------------------KFDTAI---ELEKETKPMYMNV 507

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
               N    +++ + +  +A    + AL I P    ++  +  +   QG +D A ++ E+
Sbjct: 508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER 567

Query: 394 A 394
           A
Sbjct: 568 A 568

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 18/172 (10%)

Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
            + Y  +G   +A ++  KAL  DPSY  A    A     LG    LA       + Y +
Sbjct: 42  ALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG-ENDLAD------ESYRK 94

Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRG 239
           AL + P+      N G       + + A+  +E+A L  P Y   ++   N+G+     G
Sbjct: 95  ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERA-LADPAYGEPSDTLENLGLCALKAG 153

Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
             + A    +R L + P F  A   +A             GD      Y ++
Sbjct: 154 QFDQAEEYLKRALELDPQFPPALLELARLH-------YKAGDYAPARLYLER 198

Length = 250

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
           AEA  NLG  Y   G    A++ YE+ L++DP+
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 41/181 (22%), Positives = 67/181 (37%), Gaps = 23/181 (12%)

Query: 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214
            L   L         A + Q       EA K       A   L + Y +   Y  A    
Sbjct: 9   SLVFSLALGACVTDPAPSRQTDRN---EAAK-------ARLQLALGYLQQGDYAQAKKNL 58

Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
           EKA    P Y  A+      Y+  G+ + A   Y + L+++PN     NN        G 
Sbjct: 59  EKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN-------YGA 111

Query: 275 KVKLEGDINQGVAYYKKAL----YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
            +  +G   + +  +++AL    Y     +D + NLG+   +  +FD A  + + A   +
Sbjct: 112 FLCAQGRPEEAMQQFERALADPAYG--EPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169

Query: 331 P 331
           P
Sbjct: 170 P 170

Length = 250

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAF-------HFNPHCAEACNNLGVIYKDRDNLDK 352
           A A+ NL +    +  +D A+   E A          +P  A A NNL  +Y    + D+
Sbjct: 5   AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64

Query: 353 AVECYQMALSIKPN 366
           A+E  + AL+++  
Sbjct: 65  ALEYLEKALALREA 78

Length = 78

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 40.5 bits (96), Expect = 5e-05
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
           A AY  +G IY   GD E A   YE+ L + PN 
Sbjct: 1   ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34

Length = 34

>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]

 Score = 45.0 bits (106), Expect = 7e-05
 Identities = 44/180 (24%), Positives = 67/180 (37%), Gaps = 19/180 (10%)

Query: 190 YAPAYYNLGVVYSELM----QYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDL 241
            A A   LG +Y            A   Y  AA +    AEA  N+G++Y N      DL
Sbjct: 72  DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--GLAEALFNLGLMYANGRGVPLDL 129

Query: 242 ESAIACYER-CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
             A+  YE+     +    +A   + +A       + +  D  + +  Y+KA        
Sbjct: 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NP 187

Query: 301 DAMYNLGVAY----GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356
           DA   LG  Y    G       A  +Y+ A         AC NLG++Y + + + KA   
Sbjct: 188 DAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLGLMYLNGEGVKKAAFL 245

Length = 292

>gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only]

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
           G  +AAAE+  +A+   P +A  +  LG     AG    A  AYE+ L++DP+       
Sbjct: 9   GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAAL 68

Query: 442 RLLAM 446
           +L  +
Sbjct: 69  KLAVL 73

Length = 287

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 30/129 (23%), Positives = 44/129 (34%), Gaps = 7/129 (5%)

Query: 47  EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
           E       A  L  R     +LA+ +        + E    +G           A     
Sbjct: 65  EDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLR 124

Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
           +A +L P +  A    G      GR  EA  +Y +AL   P      E    +  +LG S
Sbjct: 125 KAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-----NE--PSIANNLGMS 177

Query: 167 LKLAGNTQD 175
           L L G+ +D
Sbjct: 178 LLLRGDLED 186

Length = 257

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 67/310 (21%), Positives = 123/310 (39%), Gaps = 38/310 (12%)

Query: 2   AWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVG--STLKGFEGKDALSYANILR 59
           A +E       E    Q    LK P+S    S    A      L   +  +  + A  LR
Sbjct: 278 AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLR 337

Query: 60  S-----RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
                 + K ++ALA     +E D    +++I +            A + F +A+KL+ +
Sbjct: 338 GTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE 397

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
           +   + H   L+  +G   +A + Y K++  DP +             LG +    G+  
Sbjct: 398 DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-------IFSHIQLGVTQYKEGSIA 450

Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELM----QYDTALGCYEKA-ALER---PMYAE 226
             +  +    K  P  AP  YN    Y EL+    ++D A+  ++ A  LE+   PMY  
Sbjct: 451 SSMATFRRCKKNFPE-APDVYNY---YGELLLDQNKFDEAIEKFDTAIELEKETKPMYMN 506

Query: 227 AYCNMG---VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL-EGDI 282
               +     +++ + D   A    E+ L + P  +IA   MA        ++ L +GD+
Sbjct: 507 VLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMA--------QLLLQQGDV 558

Query: 283 NQGVAYYKKA 292
           ++ +  +++A
Sbjct: 559 DEALKLFERA 568

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 1/127 (0%)

Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
            L   Y++    DKA+E Y+  L   PN    L  L +     GK   A + +++ +A  
Sbjct: 91  ALAKAYRNEKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARF 150

Query: 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH-DDKL 457
           PT A  Y  L  + R A     A+ A++Q L ++PD+  A       +  +       +L
Sbjct: 151 PTDAARYEALAYVLRAAEDHLDALQAWQQALTLEPDNPEAALELYRILTRLGAPPAAARL 210

Query: 458 FEAHRDW 464
            + + D 
Sbjct: 211 AKQYPDL 217

Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211
           Y +AL++DP+ A AYYNL ++   L QYD AL
Sbjct: 2   YEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33

Length = 34

>gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 42/234 (17%)

Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
           Q D A+  + +   E P   EA+  +G ++++RG+++ AI  ++  L  SP+    +  +
Sbjct: 50  QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQT-LLESPDLTFEQRLL 108

Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
           A  L  LG               Y  A   +   A+ ++N  V  GE  +          
Sbjct: 109 A--LQQLGRD-------------YMAAGLLD--RAEDIFNQLVDEGEFAE---------- 141

Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP-----NFSQSLNNLGVVYTV 380
                     A   L  IY+     +KA++  +  + +         +Q    L      
Sbjct: 142 ---------GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192

Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
              +D A E+++KA+ A+     A   LG +    G    A++A E+ L+ +P+
Sbjct: 193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246

Length = 389

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
           AEA  N+G+ Y   GD E A+  YE+ L + PN 
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK-FDMAIVF 322
           + A AL +LG  +   GD ++ +  Y+KAL  +   A+A YNL +AY ++ K ++ A+  
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 323 YELAFHFNP 331
            E A   +P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG-RLAFDSFSEAVKLDP 113
            N L     + +A+  YE  LE D  N EA+    +           A +   +A++LDP
Sbjct: 10  GNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
           A AY  LG +Y   G    A + YE+ L++DP++
Sbjct: 1   ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34

Length = 34

>gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 59/303 (19%), Positives = 90/303 (29%), Gaps = 80/303 (26%)

Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
           A D F E ++ DP+   AH   G L++  G  V+ A   H+ L   P        LA+  
Sbjct: 54  AVDLFLEMLQEDPETFEAHLTLGNLFRSRGE-VDRAIRIHQTLLESPDLTFEQRLLAL-- 110

Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
                                               LG  Y      D A   + +   E
Sbjct: 111 ----------------------------------QQLGRDYMAAGLLDRAEDIFNQLVDE 136

Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP---NFEIAKNNMAIALTDLGTKVK 277
                 A   +  IY+   + E AI   ER + +       EIA+    +A   L +   
Sbjct: 137 GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS-- 194

Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
              D+++                 A   L  A                    +  C  A 
Sbjct: 195 ---DVDR-----------------ARELLKKALQA-----------------DKKCVRAS 217

Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
             LG +   + +  KAVE  +  L   P + S+ L  L   Y   GK       + +A+ 
Sbjct: 218 IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277

Query: 397 ANP 399
            N 
Sbjct: 278 TNT 280

Length = 389

>gnl|CDD|220721 pfam10373, EST1_DNA_bind, Est1 DNA/RNA binding domain

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 23/62 (37%), Positives = 29/62 (46%)

Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
           AL  Y  A+L  P   E Y  +GVI    G+   A+  Y R LAV   F  AKNN+ +  
Sbjct: 1   ALRYYLLASLLLPSSGEPYNQLGVIALYVGNHLDAVYYYLRSLAVRNPFPTAKNNLELLF 60

Query: 270 TD 271
             
Sbjct: 61  EK 62

Est1 is a protein which recruits or activates telomerase at the site of polymerisation. This is the DNA/RNA binding domain of EST1. Length = 276

>gnl|CDD|236875 PRK11189, PRK11189, lipoprotein NlpI; Provisional

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 8/121 (6%)

Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV-LYRDAGSI 418
           AL+++P+ + + N LG+  T  G  DAA E  +  +  +PTY  AY N G+ LY   G  
Sbjct: 90  ALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG-GRY 148

Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSW 478
            LA D      + DP+       R L + Y+ E   D   +A  +  +R+ +L  +   W
Sbjct: 149 ELAQDDLLAFYQDDPND----PYRALWL-YLAESKLDPK-QAKENLKQRYEKLDKEQWGW 202

Query: 479 D 479
           +
Sbjct: 203 N 203

Length = 296

>gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 17/109 (15%)

Query: 352 KAVECYQMALSIKPN---FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
           +A+E Y+ AL ++ +    S  L N+G++Y   G+ D A E   +A+  NP    A NN+
Sbjct: 53  EALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112

Query: 409 GVLYRDAGSIS--------------LAIDAYEQCLKIDPDSRNAGQNRL 443
            V+Y   G  +               A + ++Q +++ P++    QN L
Sbjct: 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWL 161

Length = 172

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 16/27 (59%), Positives = 18/27 (66%)

Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA 217
           A A YNLG  Y +L +YD AL  YEKA
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKA 27

Length = 34

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 17/63 (26%), Positives = 31/63 (49%)

Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
           L        + D+A+   + AL+  P  +++L  LG     QG++  AA ++  A+AA+P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Query: 400 TYA 402
              
Sbjct: 63  DDP 65

Length = 65

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 11/144 (7%)

Query: 51  ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
           AL Y      +  +  A    E  LE D     AH+ +    Q      LA +S+ +A+ 
Sbjct: 42  ALGYLQ----QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS 97

Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
           L P N     + G     +GR  EA + + +AL ADP+Y       +  L +LG     A
Sbjct: 98  LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERAL-ADPAYGEP----SDTLENLGLCALKA 152

Query: 171 GNTQDGIQKYYE-ALKIDPHYAPA 193
           G   D  ++Y + AL++DP + PA
Sbjct: 153 GQF-DQAEEYLKRALELDPQFPPA 175

Length = 250

>gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only]

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 8/120 (6%)

Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
           AL+I+P+  +  N LG+  T  G  DAA E  +  +  +PTY  A+ N G+     G   
Sbjct: 91  ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150

Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE-GHDDKLFEAHRDWGKRFMRLYSQYTSW 478
           LA D      + DP+       R L + Y+NE   D K  +A  +  +R  +   +   W
Sbjct: 151 LAQDDLLAFYQDDPND----PFRSLWL-YLNEQKLDPK--QAKTNLKQRAEKSDKEQWGW 203

Length = 297

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 390 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422
           + EKA+  +P  AEAY NL +L  + G    A+
Sbjct: 1   LYEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33

Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 37.5 bits (88), Expect = 5e-04
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
           AEA  NLG+ Y    + ++A+E Y+ AL + PN 
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional

 Score = 42.8 bits (101), Expect = 7e-04
 Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 9/106 (8%)

Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
            G+   A   +++A+ ANP  +EA   LG  Y   G  + A+  +E+ L +DP S N  +
Sbjct: 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341

Query: 441 -NRLLAMN-Y---INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNT 481
              LL +N Y   I +G  D   +A+        RLY Q    DNT
Sbjct: 342 WESLLKVNRYWLLIQQG--DAALKANNLAQAE--RLYQQARQVDNT 383

Length = 1157

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 81  NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG-RLVEAAESY 139
           N EA    G  L        A +++ +A++LDP NA A+ +  + Y   G    EA E  
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 140 HKALSADP 147
            KAL  DP
Sbjct: 62  EKALELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
           AEA  NLG      G    AI+AYE+ L++DPD+  A  N   A+ Y+  G D +
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNL--ALAYLKLGKDYE 55

Length = 69

>gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 4/113 (3%)

Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAA-LERPMYAEAYC--NMGVIYKNRGDLESAIAC 247
           A  YY  G+      +Y  AL  Y +A  LE   Y  +Y   N+G+I+ + G+   A+  
Sbjct: 35  AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94

Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
           Y + L  +P    A NNMA+     G +   +GD     A++ +A  Y W  A
Sbjct: 95  YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY-WKQA 146

Length = 168

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
           AEA  NLG+ Y   G    A++AYE+ L++DP+
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 13/66 (19%), Positives = 23/66 (34%)

Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
            ++ +  G   EA E   KAL             A  L +L       G+  + ++   +
Sbjct: 12  ALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEK 71

Query: 183 ALKIDP 188
           AL +  
Sbjct: 72  ALALRE 77

Length = 78

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
           A A   LG IY    + ++A E Y+ AL + PN 
Sbjct: 1   ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34

Length = 34

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 35.5 bits (83), Expect = 0.003
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
           A A+YNLG AY ++ K+D A+ +YE A   NP+ 
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 13/158 (8%)

Query: 274 TKVKLEGDINQGVAYYKKALYYNWH---YADAMYNLGVAYGEMLKFDMAI-VFYEL--AF 327
            + K E   NQ        L           A Y   +      ++D A+ +   L  A 
Sbjct: 281 IRAKYEALPNQ----QAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ 336

Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
             NP+  E     G I  + +   +A+E  + AL++ PN      NL       GK   A
Sbjct: 337 PDNPYYLEL---AGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393

Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425
             ++ + +  +P     ++ L   Y + G+ + A+ A 
Sbjct: 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431

Length = 484

>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
           +M+A    +E  +  NP  AE ++ LG  Y   G  S A+ AY   L++  D+   
Sbjct: 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI 192

Length = 287

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 35.1 bits (82), Expect = 0.004
 Identities = 16/27 (59%), Positives = 17/27 (62%)

Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA 217
           A A YNLG  Y +L  YD AL  YEKA
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKA 27

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 32/143 (22%), Positives = 47/143 (32%), Gaps = 19/143 (13%)

Query: 88  KGICLQMQNMGRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA 145
            G  LQ    G+   A       +   P N       G +  +  +  EA E   KAL+ 
Sbjct: 310 YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL 369

Query: 146 DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205
           DP+         ++  +L  +L   G  Q+ I+     L  DP     +  L   Y+EL 
Sbjct: 370 DPN-------SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAEL- 421

Query: 206 QYDTALGCYEKAALERPMYAEAY 228
                       A      AE Y
Sbjct: 422 ---------GNRAEALLARAEGY 435

Length = 484

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	689
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	100.0
PF13844	468	Glyco_transf_41: Glycosyl transferase family 41; P	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
KOG0547	606	consensus Translocase of outer mitochondrial membr	100.0
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	100.0
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	100.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.98
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.98
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.97
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.96
KOG1126	638	consensus DNA-binding cell division cycle control	99.96
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.96
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.96
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.96
PRK14574	822	hmsH outer membrane protein; Provisional	99.96
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.95
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.95
KOG2076	895	consensus RNA polymerase III transcription factor	99.95
KOG1126	638	consensus DNA-binding cell division cycle control	99.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.95
KOG2003	840	consensus TPR repeat-containing protein [General f	99.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.94
KOG2003	840	consensus TPR repeat-containing protein [General f	99.94
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.94
PRK14574	822	hmsH outer membrane protein; Provisional	99.94
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.93
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.93
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.93
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.92
KOG2076	895	consensus RNA polymerase III transcription factor	99.92
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.91
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.91
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.89
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.89
PLN03218	1060	maturation of RBCL 1; Provisional	99.89
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.88
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.88
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.88
KOG1129	478	consensus TPR repeat-containing protein [General f	99.88
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.88
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.88
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.88
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.87
PLN03218	1060	maturation of RBCL 1; Provisional	99.87
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.87
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.87
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.86
PLN03077	857	Protein ECB2; Provisional	99.86
PRK12370	553	invasion protein regulator; Provisional	99.86
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.86
PRK12370	553	invasion protein regulator; Provisional	99.86
KOG1125	579	consensus TPR repeat-containing protein [General f	99.86
KOG1129	478	consensus TPR repeat-containing protein [General f	99.86
KOG1125	579	consensus TPR repeat-containing protein [General f	99.85
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.85
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.84
PRK11189	296	lipoprotein NlpI; Provisional	99.83
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.83
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.83
PLN03077	857	Protein ECB2; Provisional	99.82
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.82
PRK11189	296	lipoprotein NlpI; Provisional	99.82
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.82
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.81
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.81
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.81
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.81
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.8
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.8
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.79
PLN02789	320	farnesyltranstransferase	99.79
PLN02789	320	farnesyltranstransferase	99.76
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.75
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.75
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.74
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.74
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.73
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.71
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.69
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.68
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.67
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.66
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.66
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.64
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.63
PRK15359	144	type III secretion system chaperone protein SscB;	99.63
PRK04841	903	transcriptional regulator MalT; Provisional	99.63
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.62
PRK15359	144	type III secretion system chaperone protein SscB;	99.62
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.62
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.6
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.6
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.58
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.57
PRK04841	903	transcriptional regulator MalT; Provisional	99.55
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.54
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.53
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.52
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.52
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.51
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.51
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.5
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.49
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.48
KOG0553	304	consensus TPR repeat-containing protein [General f	99.46
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.45
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.43
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.42
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.42
KOG0553	304	consensus TPR repeat-containing protein [General f	99.41
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.37
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.36
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.35
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.3
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.3
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.26
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.26
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.24
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.23
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.22
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.22
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.2
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.17
COG3898	531	Uncharacterized membrane-bound protein [Function u	99.15
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.14
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.13
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	99.13
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.12
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.1
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.1
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.1
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.09
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.09
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.08
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.07
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.04
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.04
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.04
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.04
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.02
PRK10803	263	tol-pal system protein YbgF; Provisional	99.02
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.0
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.0
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.99
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.99
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.99
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.98
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.98
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.98
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.98
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.97
KOG2300	629	consensus Uncharacterized conserved protein [Funct	98.97
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.96
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.96
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.96
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.95
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.95
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.94
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.93
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.93
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.93
PRK15331	165	chaperone protein SicA; Provisional	98.93
PRK11906	458	transcriptional regulator; Provisional	98.92
PRK11906	458	transcriptional regulator; Provisional	98.91
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.91
PRK15331	165	chaperone protein SicA; Provisional	98.91
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.89
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.89
PRK10803	263	tol-pal system protein YbgF; Provisional	98.88
KOG2300	629	consensus Uncharacterized conserved protein [Funct	98.88
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.86
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.86
KOG2471	696	consensus TPR repeat-containing protein [General f	98.84
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.83
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.8
KOG2471	696	consensus TPR repeat-containing protein [General f	98.79
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.78
KOG4234	271	consensus TPR repeat-containing protein [General f	98.77
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.77
PF13512	142	TPR_18: Tetratricopeptide repeat	98.76
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.75
PF12688	120	TPR_5: Tetratrico peptide repeat	98.75
KOG4234	271	consensus TPR repeat-containing protein [General f	98.74
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.74
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.74
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.72
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.71
PF12688	120	TPR_5: Tetratrico peptide repeat	98.68
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.65
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.63
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.62
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.6
PF13371	73	TPR_9: Tetratricopeptide repeat	98.59
PF13371	73	TPR_9: Tetratricopeptide repeat	98.56
KOG4507	886	consensus Uncharacterized conserved protein, conta	98.55
PF13512	142	TPR_18: Tetratricopeptide repeat	98.54
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.52
KOG4555	175	consensus TPR repeat-containing protein [Function	98.52
KOG1586	288	consensus Protein required for fusion of vesicles	98.51
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.51
KOG4555	175	consensus TPR repeat-containing protein [Function	98.47
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.43
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.43
KOG1586	288	consensus Protein required for fusion of vesicles	98.42
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.4
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.37
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.37
KOG1258	577	consensus mRNA processing protein [RNA processing	98.32
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.3
KOG1585	308	consensus Protein required for fusion of vesicles	98.29
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.29
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.28
KOG1585	308	consensus Protein required for fusion of vesicles	98.26
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.24
KOG1258	577	consensus mRNA processing protein [RNA processing	98.23
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.22
KOG4507	886	consensus Uncharacterized conserved protein, conta	98.21
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.16
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.12
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.11
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.08
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.08
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	98.06
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.06
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.06
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.05
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	98.03
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.02
KOG1550	552	consensus Extracellular protein SEL-1 and related	98.02
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.01
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.01
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.99
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.98
PF13428	44	TPR_14: Tetratricopeptide repeat	97.96
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.96
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.96
PF13428	44	TPR_14: Tetratricopeptide repeat	97.89
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.89
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.88
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.83
PF13431	34	TPR_17: Tetratricopeptide repeat	97.82
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.82
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.8
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.79
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.78
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.76
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.76
PF13431	34	TPR_17: Tetratricopeptide repeat	97.76
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.76
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.75
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.75
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.73
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.68
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	97.67
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.66
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.65
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.6
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.55
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.48
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.47
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.45
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.45
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.44
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.43
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.37
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.37
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.36
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.33
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.3
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.27
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.27
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	97.27
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.22
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.2
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.18
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.12
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.08
PRK11619	644	lytic murein transglycosylase; Provisional	96.97
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.97
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.91
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.87
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.81
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.76
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.75
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.74
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.7
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.7
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.69
KOG1463	411	consensus 26S proteasome regulatory complex, subun	96.67
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.64
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.6
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.6
COG5159	421	RPN6 26S proteasome regulatory complex component [	96.53
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.47
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.42
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.34
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.31
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.3
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.26
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.22
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.21
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.18
KOG1463	411	consensus 26S proteasome regulatory complex, subun	96.15
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.14
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.12
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.11
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.08
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.08
COG5159	421	RPN6 26S proteasome regulatory complex component [	96.07
PRK10941	269	hypothetical protein; Provisional	95.98
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.91
PRK10941	269	hypothetical protein; Provisional	95.88
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.81
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.8
PRK11619	644	lytic murein transglycosylase; Provisional	95.75
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.75
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.7
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.65
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.64
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.63
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.48
KOG3364	149	consensus Membrane protein involved in organellar	95.27
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	95.12
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.07
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.89
KOG1310	758	consensus WD40 repeat protein [General function pr	94.82
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.77
KOG1310	758	consensus WD40 repeat protein [General function pr	94.71
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.69
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.66
COG1747	711	Uncharacterized N-terminal domain of the transcrip	94.65
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.6
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	94.5
KOG3364	149	consensus Membrane protein involved in organellar	94.38
KOG0529	421	consensus Protein geranylgeranyltransferase type I	94.36
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.28
KOG2422	665	consensus Uncharacterized conserved protein [Funct	93.97
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.75
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	93.62
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	93.56
KOG2422	665	consensus Uncharacterized conserved protein [Funct	93.37
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.37
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.3
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.03
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	92.65
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.65
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	92.58
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.41
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.88
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	91.82
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.82
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	91.5
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.42
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	91.41
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	91.18
COG2912	269	Uncharacterized conserved protein [Function unknow	91.17
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.96
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	90.84
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.8
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	90.7
COG2912	269	Uncharacterized conserved protein [Function unknow	90.53
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	90.0
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	89.95
COG3629	280	DnrI DNA-binding transcriptional activator of the	89.79
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.77
COG1747	711	Uncharacterized N-terminal domain of the transcrip	89.75
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.33
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	89.21
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.88
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	88.87
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	88.79
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	88.4
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.29
KOG2581	493	consensus 26S proteasome regulatory complex, subun	88.06
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	87.98
COG4941	415	Predicted RNA polymerase sigma factor containing a	87.89
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	87.37
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	87.16
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	87.08
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	86.75
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	85.81
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	85.73
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	85.49
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	85.44
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	85.41
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	84.94
smart00299	140	CLH Clathrin heavy chain repeat homology.	84.67
PF04348	536	LppC: LppC putative lipoprotein; InterPro: IPR0074	84.61
COG3947	361	Response regulator containing CheY-like receiver a	84.36
KOG4014	248	consensus Uncharacterized conserved protein (conta	84.06
KOG4814	872	consensus Uncharacterized conserved protein [Funct	83.8
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	83.74
KOG2581	493	consensus 26S proteasome regulatory complex, subun	83.6
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	83.57
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	83.35
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	83.34
COG3947	361	Response regulator containing CheY-like receiver a	83.12
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	82.31
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.99
KOG4014	248	consensus Uncharacterized conserved protein (conta	81.42
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	80.91
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	80.27

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-119  Score=873.77  Aligned_cols=655  Identities=37%  Similarity=0.537  Sum_probs=607.0

Q ss_pred             ccCCCCCCccccccccCCCCCCCCCCCCCcccccccccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 005594            8 VSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIG   87 (689)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~   87 (689)
                      .....++.+.....+.++...+.....+..+  ....+.-++.+-.+|+++..+|++++|+.+|+.++++.|++.++|.+
T Consensus        78 d~t~~~~llll~ai~~q~~r~d~s~a~~~~a--~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~in  155 (966)
T KOG4626|consen   78 DPTNTERLLLLSAIFFQGSRLDKSSAGSLLA--IRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYIN  155 (966)
T ss_pred             CCCcccceeeehhhhhcccchhhhhhhhhhh--hhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhh
Confidence            3445666667777777766655444443332  22334557778889999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHH
Q 005594           88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL  167 (689)
Q Consensus        88 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~  167 (689)
                      +|.++...|+.+.|.++|..+++++|+...+...+|.++..+|+..+|..+|.++++..|...-       +|.++|..+
T Consensus       156 la~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAi-------awsnLg~~f  228 (966)
T KOG4626|consen  156 LAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAI-------AWSNLGCVF  228 (966)
T ss_pred             HHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceee-------eehhcchHH
Confidence            9999999999999999999999999999999999999999999999999999999999997544       488999999


Q ss_pred             HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594          168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC  247 (689)
Q Consensus       168 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  247 (689)
                      ..+|+...|+..|+++++++|...++|++||.+|...+.+++|+.+|.+++...|+++.++-++|.+|..+|..+-|+..
T Consensus       229 ~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~  308 (966)
T KOG4626|consen  229 NAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDT  308 (966)
T ss_pred             hhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005594          248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF  327 (689)
Q Consensus       248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  327 (689)
                      |++++++.|+.++++.+++.++..+       |+..+|..+|.+++.+.|.++++.++||.++.++|++++|..+|.+++
T Consensus       309 Ykral~~~P~F~~Ay~NlanALkd~-------G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al  381 (966)
T KOG4626|consen  309 YKRALELQPNFPDAYNNLANALKDK-------GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL  381 (966)
T ss_pred             HHHHHhcCCCchHHHhHHHHHHHhc-------cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            9999999999999998888888775       699999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 005594          328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN  407 (689)
Q Consensus       328 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  407 (689)
                      +..|..+.+..+||.+|.++|++++|+.+|++++++.|..++++.++|..|..+|+.+.|+.+|.+++..+|..++++.+
T Consensus       382 ~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsN  461 (966)
T KOG4626|consen  382 EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSN  461 (966)
T ss_pred             hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCCh-----HHHHHHHHHHHH--HHhhh---------
Q 005594          408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD-----DKLFEAHRDWGK--RFMRL---------  471 (689)
Q Consensus       408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~---------  471 (689)
                      ||.+|...|+..+|++.|+.+++++||.+++..|++.++.++..|.+     +++....++|..  ++...         
T Consensus       462 Lasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~yp  541 (966)
T KOG4626|consen  462 LASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLYP  541 (966)
T ss_pred             HHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCcccccccc
Confidence            99999999999999999999999999999999999999999999987     777888888873  33221         


Q ss_pred             -------------------------ccccccCCCCCCCCCCeEEEEecCCcccchHHHHHHhhccccCCCceEEEEEeCC
Q 005594          472 -------------------------YSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAV  526 (689)
Q Consensus       472 -------------------------~~~~~~~~~~~~~~~~lriG~~S~d~~~h~v~~~~~~~~~~~d~~~fev~~y~~~  526 (689)
                                               .+++..|.+-+.+++||||||||+||.+||+++||..++.+|||++||||||+.+
T Consensus       542 l~~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~~~~~rlrIGYvSsDFgnHp~Shlmqsv~gmHdr~kveVfcYals  621 (966)
T KOG4626|consen  542 LSHILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLKVKEGRLRIGYVSSDFGNHPTSHLMQSVPGMHDRSKVEVFCYALS  621 (966)
T ss_pred             cchHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCCCCcCceEEEeecccccCCchHHHhccCcCcCCccceEEEEEEee
Confidence                                     2346677778888999999999999999999999999999999999999999987


Q ss_pred             CCCChHhHHHHHHhhhcCCceEeCCCCCHHHHHHHHHhCCCcEEEecCCCCCCCchhhhccCCCceEEecccCCCCCCCC
Q 005594          527 VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLP  606 (689)
Q Consensus       527 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~idilvdl~g~t~~~~~~~~a~r~APvq~~~~G~p~t~g~~  606 (689)
                      +.++..   ||..+.++++||+|+++++...+|..|++|+|||||+|+|||.|+|.++||+|||||||+|+|||||||++
T Consensus       622 ~~d~t~---fR~kv~~e~ehf~Dls~i~~~kiA~~I~qD~I~ILvnlnGyTkgarneifAlrPAPIQv~wlGyPgTtGa~  698 (966)
T KOG4626|consen  622 VNDGTN---FRDKVMKEAEHFVDLSQIPCNKIADKIRQDKIHILVNLNGYTKGARNEIFALRPAPIQVMWLGYPGTTGAT  698 (966)
T ss_pred             cCCCch---HHHHHHhhccceeehhcCChHHHHHHHhhcCceEEEeccccccccccceeeccCCceeEEeecCCCCCCCc
Confidence            744422   78888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccEEeecCCCCCccccccCccceeecCCCccccCCCC--------CCCCCCCCCCCCCCCEEEEeCCCCCCCCHHHHHh
Q 005594          607 TIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSP--------EAGPVCPTPALTNGFITFGSFNNLAKCKTQISFN  678 (689)
Q Consensus       607 ~~Dy~i~d~~~~p~~~~~~y~E~l~~lp~~~~~~~~~~--------~~~~~~~~~~~~~~~~~f~~~n~~~k~~~~~~~~  678 (689)
                      +|||+|||.++.|++....|+|||++|||||+|+++.+        ..-|+++.++|++|+|||||||+++||+|+|+..
T Consensus       699 ~mDYiITDs~tsPl~~a~~ysEkLv~lPh~ffi~d~~qk~~~~~dpn~kP~r~~y~Lp~d~vvf~~FNqLyKidP~~l~~  778 (966)
T KOG4626|consen  699 FMDYIITDSVTSPLELAQQYSEKLVYLPHCFFIGDHKQKNQDVLDPNNKPTRSQYGLPEDAVVFCNFNQLYKIDPSTLQM  778 (966)
T ss_pred             eeeEEeecccCChHHHHHHHHHHHhhCCceEEecCcccccccccCCCCCCCCCCCCCCCCeEEEeechhhhcCCHHHHHH
Confidence            99999999999999999999999999999999999876        4456778899999999999999999999999999


Q ss_pred             hhh
Q 005594          679 IGA  681 (689)
Q Consensus       679 w~~  681 (689)
                      |.+
T Consensus       779 W~~  781 (966)
T KOG4626|consen  779 WAN  781 (966)
T ss_pred             HHH
Confidence            987

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-66  Score=509.60  Aligned_cols=383  Identities=26%  Similarity=0.395  Sum_probs=300.2

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594          281 DINQGVAYYKKALYYNWHYADAMYN--LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ  358 (689)
Q Consensus       281 ~~~~A~~~~~~al~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  358 (689)
                      ...-++..+...+..++.++..+..  +...+...+....+.......+..+|.+..+..+++......|....+...+.
T Consensus        46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~  125 (620)
T COG3914          46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS  125 (620)
T ss_pred             chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3344555566666677777765433  47777778888888888899999999999999999988887777666655554


Q ss_pred             H-HHhcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          359 M-ALSIKPNFSQSLNNL------GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI  431 (689)
Q Consensus       359 ~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  431 (689)
                      . +....|++.+....+      +.....+|+..++...++++..+.|.++.+...+......+..+.          ..
T Consensus       126 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~----------~~  195 (620)
T COG3914         126 EIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP----------EE  195 (620)
T ss_pred             HHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch----------hc
Confidence            4 788888887765555      888888888999999999999999988776666655544443333          23


Q ss_pred             CCCChhhHhhHHHH-----hhhccCCChHHHHHHHHHHHHHHhhhc---cccccCC-CCCCCCCCeEEEEecCCcccchH
Q 005594          432 DPDSRNAGQNRLLA-----MNYINEGHDDKLFEAHRDWGKRFMRLY---SQYTSWD-NTKDPERPLVIGYVSPDYFTHSV  502 (689)
Q Consensus       432 ~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~lriG~~S~d~~~h~v  502 (689)
                      .|.+-.......+.     ..++.+ ++........+....+....   .+++.|. +....++|+||||+|+|++.|+|
T Consensus       196 ~~tnl~~~~~~~~~~~~~~~~~~~d-~p~~~l~~~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~rlRvGylS~dlr~Hav  274 (620)
T COG3914         196 APTNLLSQLALFLGIYGFSLAYLAD-DPLKNLAIANQLLKILSQNAPELVRFPIRDENIKRNGKRLRVGYLSSDLRSHAV  274 (620)
T ss_pred             cchHHHHHHHHHhhccccchhhhcc-chhhhHHHHHHHHHHhcccCCCccccccchhhccccccceeEEEeccccccchH
Confidence            33333222222211     122222 12233333444444444222   2334444 23345789999999999999999


Q ss_pred             HHHHHhhccccCCCceEEEEEeCC-CCCChHhHHHHHHhhhcCCceEeCCCCCHHHHHHHHHhCCCcEEEecCCCCCCCc
Q 005594          503 SYFIEAPLVYHDYQNYKVVVYSAV-VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNK  581 (689)
Q Consensus       503 ~~~~~~~~~~~d~~~fev~~y~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~idilvdl~g~t~~~~  581 (689)
                      ++++.+++++|||++||||+|+.+ ++.|..+.|++..+    .+|.++.+|+|.++|++|+.|+||||||++|||..+|
T Consensus       275 g~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~----~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r  350 (620)
T COG3914         275 GFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAV----EKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTR  350 (620)
T ss_pred             HHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhh----hheeccCCcCHHHHHHHHHhcCCeEEEeccCceeccc
Confidence            999999999999999999999998 66788999999988    6799999999999999999999999999999999999


Q ss_pred             hhhhccCCCceEEecccCCCCCCCCcccEEeecCCCCCccccccCccceeecCCCccccCCCCCCCCCCCC-----CCCC
Q 005594          582 LGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPT-----PALT  656 (689)
Q Consensus       582 ~~~~a~r~APvq~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~y~E~l~~lp~~~~~~~~~~~~~~~~~~-----~~~~  656 (689)
                      ++|||.|||||||||+|||+|||+|.|||||+|++|+||+.|.+|||||||||.   ||+|.+.-.++.|+     ++++
T Consensus       351 ~~v~A~RpAPiqvswlGy~aT~g~p~~DY~I~D~y~vPp~ae~yysEkl~RLp~---cy~p~d~~~~v~p~~sR~~lglp  427 (620)
T COG3914         351 CQVFAHRPAPIQVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLPQ---CYQPVDGFEPVTPPPSRAQLGLP  427 (620)
T ss_pred             hhhhhcCCCceEEeecccccccCCCcceEEeeCceecCchHHHHHHHHHHhccc---ccCCCCCcccCCCCcchhhcCCC
Confidence            999999999999999999999999999999999999999999999999999994   67888776666655     5789


Q ss_pred             CCCEEEEeCCCCCCCCHHHHHhhhh
Q 005594          657 NGFITFGSFNNLAKCKTQISFNIGA  681 (689)
Q Consensus       657 ~~~~~f~~~n~~~k~~~~~~~~w~~  681 (689)
                      +++||||||||.+||||++|++|.+
T Consensus       428 ~~avVf~c~~n~~K~~pev~~~wmq  452 (620)
T COG3914         428 EDAVVFCCFNNYFKITPEVFALWMQ  452 (620)
T ss_pred             CCeEEEEecCCcccCCHHHHHHHHH
Confidence            9999999999999999999999987

>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A

Probab=100.00  E-value=1.6e-57  Score=452.87  Aligned_cols=151  Identities=44%  Similarity=0.801  Sum_probs=125.5

Q ss_pred             eEEEEecCCcccchHHHHHHhhccccCCCceEEEEEeCCCCC-ChHhHHHHHHhhhcCCceEeCCCCC-HHHHHHHHHhC
Q 005594          488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKA-DAKTIRFREKVMKKGGIWRDIYGID-EKKVAAMVRED  565 (689)
Q Consensus       488 lriG~~S~d~~~h~v~~~~~~~~~~~d~~~fev~~y~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d  565 (689)
                      |||||||+||++||+++|+.+++++|||++|||++|+.++.+ +..+++++..+    ++|+++.+++ +.++|++|++|
T Consensus         1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~~~~----~~~~dl~~~~~~~~~A~~Ir~D   76 (468)
T PF13844_consen    1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIRAEA----DHFVDLSGLSDDAEAAQRIRAD   76 (468)
T ss_dssp             EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHHHHS----EEEEEEEE-TTSHHHHHHHHHT
T ss_pred             CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHHHhC----CeEEECccCCcHHHHHHHHHHC
Confidence            799999999999999999999999999999999999988654 45777777765    7999999987 68999999999


Q ss_pred             CCcEEEecCCCCCCCchhhhccCCCceEEecccCCCCCCCCcccEEeecCCCCCccccccCccceeecCCCccccCC
Q 005594          566 KIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTP  642 (689)
Q Consensus       566 ~idilvdl~g~t~~~~~~~~a~r~APvq~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~y~E~l~~lp~~~~~~~~  642 (689)
                      +|||||||+|||.++|+.|||+|||||||+|||||+|||+++|||+|+|++++|++.+.||+|||+|||++|+|+++
T Consensus        77 ~IDILVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~~ysEkLirLP~sy~~~d~  153 (468)
T PF13844_consen   77 GIDILVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEEHYSEKLIRLPHSYFCNDH  153 (468)
T ss_dssp             T-SEEEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGGG-SSEEEEESS-S----H
T ss_pred             CCCEEEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCcccccCCccceEEccCceEECCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999854

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-47  Score=369.48  Aligned_cols=401  Identities=28%  Similarity=0.431  Sum_probs=372.4

Q ss_pred             cCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----------------------------------HHHHHhHHH
Q 005594           45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------------------VEAHIGKGI   90 (689)
Q Consensus        45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------------------~~~~~~la~   90 (689)
                      .......+++|...++.|+|.+|++.+..+-..+|.+                                  .+++-++|.
T Consensus        45 ~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN  124 (966)
T KOG4626|consen   45 HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLAN  124 (966)
T ss_pred             CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHH
Confidence            3445568999999999999999999988776665543                                  567888999


Q ss_pred             HHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHc
Q 005594           91 CLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA  170 (689)
Q Consensus        91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~  170 (689)
                      ++...|++++|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|....+       ...+|..+...
T Consensus       125 ~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca-------~s~lgnLlka~  197 (966)
T KOG4626|consen  125 ILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA-------RSDLGNLLKAE  197 (966)
T ss_pred             HHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh-------hcchhHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999986555       77888999999


Q ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594          171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER  250 (689)
Q Consensus       171 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  250 (689)
                      |+..+|..+|.++++..|..+.+|.+||.++..+|+...|+..|+++++++|...++|+++|.+|...+.++.|+.+|.+
T Consensus       198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r  277 (966)
T KOG4626|consen  198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR  277 (966)
T ss_pred             cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005594          251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN  330 (689)
Q Consensus       251 al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  330 (689)
                      ++.+.|++..       ++.+++.+|..+|..+-|+..|+++++..|..++++.++|.++...|+..+|..+|.+++.+.
T Consensus       278 Al~lrpn~A~-------a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~  350 (966)
T KOG4626|consen  278 ALNLRPNHAV-------AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC  350 (966)
T ss_pred             HHhcCCcchh-------hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence            9999998764       556677777789999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005594          331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV  410 (689)
Q Consensus       331 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  410 (689)
                      |..+++.++||.++.++|.+++|...|.++++..|+.+.+..+||.+|.++|++++|+.+|+.++.+.|..++++.++|.
T Consensus       351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGn  430 (966)
T KOG4626|consen  351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGN  430 (966)
T ss_pred             CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHHHH
Q 005594          411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH  461 (689)
Q Consensus       411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (689)
                      .|..+|+...|+++|.+|+.++|...+++.|+  +..|-..|+-.+++..+
T Consensus       431 t~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL--asi~kDsGni~~AI~sY  479 (966)
T KOG4626|consen  431 TYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL--ASIYKDSGNIPEAIQSY  479 (966)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH--HHHhhccCCcHHHHHHH
Confidence            99999999999999999999999999999985  45566667766655443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=9.6e-36  Score=326.02  Aligned_cols=382  Identities=16%  Similarity=0.174  Sum_probs=331.7

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK  127 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  127 (689)
                      +..+..+|..++..|+|++|+..|+++++..|+ +..+.++|.||..+|++++|++.++++++++|++..+++.+|.++.
T Consensus       127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            445778999999999999999999999999996 7789999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHH------------------------------HHHHHHH------------------
Q 005594          128 DEGRLVEAAESYHKALSADPSYKPA------------------------------AECLAIV------------------  159 (689)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~~------------------------------~~~~a~~------------------  159 (689)
                      .+|++++|+..|..+....+.....                              ...++..                  
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE  285 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence            9999999999887766554332211                              0001110                  


Q ss_pred             --------HHHhHHHH---HHcCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005594          160 --------LTDLGTSL---KLAGNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA  225 (689)
Q Consensus       160 --------~~~l~~~~---~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  225 (689)
                              +..++...   ...+++++|+..|++++..   .|....++..+|.++..+|++++|+..++++++.+|...
T Consensus       286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~  365 (615)
T TIGR00990       286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT  365 (615)
T ss_pred             cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence                    01111111   1236899999999999986   477788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 005594          226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN  305 (689)
Q Consensus       226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  305 (689)
                      ..+..+|.++...|++++|+..|+++++.+|++...+..++.+       +...|++++|+..|+++++.+|++...+..
T Consensus       366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~-------~~~~g~~~~A~~~~~kal~l~P~~~~~~~~  438 (615)
T TIGR00990       366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL-------HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ  438 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------HHHcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence            9999999999999999999999999999999988766555544       455789999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHHH-
Q 005594          306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS------LNNLGVVY-  378 (689)
Q Consensus       306 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~~-  378 (689)
                      +|.++..+|++++|+..|+++++..|.++.++..+|.++...|++++|++.|++++++.|+....      +...+.++ 
T Consensus       439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~  518 (615)
T TIGR00990       439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF  518 (615)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999875332      22333333 


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 005594          379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN  437 (689)
Q Consensus       379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  437 (689)
                      ...|++++|+..++++++++|++..++..+|.++..+|++++|+.+|++++++.+...+
T Consensus       519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e  577 (615)
T TIGR00990       519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE  577 (615)
T ss_pred             HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence            44799999999999999999999999999999999999999999999999999887554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=6.2e-34  Score=331.49  Aligned_cols=404  Identities=20%  Similarity=0.190  Sum_probs=328.9

Q ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005594           47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY  126 (689)
Q Consensus        47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  126 (689)
                      ++..+..+|..+...|++++|+..|+++++.+|++..+++.++.++...|++++|++.|+++++.+|.+..++..++.++
T Consensus       464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  543 (899)
T TIGR02917       464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLY  543 (899)
T ss_pred             CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence            45667778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005594          127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ  206 (689)
Q Consensus       127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  206 (689)
                      ...|++++|+..++++++.+|.+...       +..++..+...|++++|+..++++++..|.+...+..+|.++...|+
T Consensus       544 ~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  616 (899)
T TIGR02917       544 LRTGNEEEAVAWLEKAAELNPQEIEP-------ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD  616 (899)
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchhH-------HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence            88888888888888888888877654       55667777778888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH-----------------
Q 005594          207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL-----------------  269 (689)
Q Consensus       207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-----------------  269 (689)
                      +++|+..|+++++..|.++..+..+|.++...|++++|+..++++++..|++...+..++.++                 
T Consensus       617 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  696 (899)
T TIGR02917       617 LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ  696 (899)
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888766655554443                 


Q ss_pred             ----------HHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 005594          270 ----------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN  339 (689)
Q Consensus       270 ----------~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  339 (689)
                                ..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|+..++++++.+|++..++..
T Consensus       697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~  775 (899)
T TIGR02917       697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTA  775 (899)
T ss_pred             hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence                      334556667788888888888888887776 667778888888888888888888888888888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 005594          340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS  419 (689)
Q Consensus       340 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  419 (689)
                      +|.++...|++++|+..|+++++.+|+++.++..++.++...|+ .+|+.+++++++..|+++..+..+|.++...|+++
T Consensus       776 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  854 (899)
T TIGR02917       776 LAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEAD  854 (899)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence            88888888888888888888888888888888888888888888 77888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHHHH
Q 005594          420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH  461 (689)
Q Consensus       420 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (689)
                      +|+.+|+++++.+|+++.+..++  +..+...|+.+++.+..
T Consensus       855 ~A~~~~~~a~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~  894 (899)
T TIGR02917       855 RALPLLRKAVNIAPEAAAIRYHL--ALALLATGRKAEARKEL  894 (899)
T ss_pred             HHHHHHHHHHhhCCCChHHHHHH--HHHHHHcCCHHHHHHHH
Confidence            88888888888888877766654  44455566666554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=4.8e-33  Score=324.00  Aligned_cols=393  Identities=16%  Similarity=0.121  Sum_probs=298.0

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHH--------------H
Q 005594           53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC--------------A  118 (689)
Q Consensus        53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~  118 (689)
                      .+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..              .
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            45888999999999999999999999999999999999999999999999999999999997643              2


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 005594          119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG  198 (689)
Q Consensus       119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  198 (689)
                      ...+|.++...|++++|+..|+++++.+|++..+       +..+|.++...|++++|++.|+++++.+|++..++..++
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a-------~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~  426 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYA-------VLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA  426 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            2355788999999999999999999999998765       777889999999999999999999999999988877777


Q ss_pred             HHHH------------------------------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005594          199 VVYS------------------------------------------ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK  236 (689)
Q Consensus       199 ~~~~------------------------------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  236 (689)
                      .++.                                          ..|++++|++.|+++++.+|+++.+++.+|.++.
T Consensus       427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~  506 (1157)
T PRK11447        427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR  506 (1157)
T ss_pred             HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            6653                                          3445555555555555555555555555555555


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC----------HHHHHHH
Q 005594          237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY----------ADAMYNL  306 (689)
Q Consensus       237 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~l  306 (689)
                      ..|++++|+..++++++..|++...+..++..       +...++.++|+..++++.......          ......+
T Consensus       507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~-------l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~  579 (1157)
T PRK11447        507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLY-------LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET  579 (1157)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-------HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence            55555555555555555555444333322221       122344555555444432111100          0112234


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 005594          307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA  386 (689)
Q Consensus       307 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  386 (689)
                      +..+...|++++|+.+++    ..|.++..+..+|.++.+.|++++|+..|+++++.+|+++.++..++.++...|++++
T Consensus       580 a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e  655 (1157)
T PRK11447        580 ANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA  655 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            455555555555555544    5788899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh----HhhHHHHhhhccCCChHHHHHHHH
Q 005594          387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA----GQNRLLAMNYINEGHDDKLFEAHR  462 (689)
Q Consensus       387 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  462 (689)
                      |++.++++++..|++..++..+|.++..+|++++|++.|++++...|+++..    ...+..+..+...|+.+++.+.++
T Consensus       656 A~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~  735 (1157)
T PRK11447        656 ARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK  735 (1157)
T ss_pred             HHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998776542    222233555667787777766555


Q ss_pred             H
Q 005594          463 D  463 (689)
Q Consensus       463 ~  463 (689)
                      .
T Consensus       736 ~  736 (1157)
T PRK11447        736 D  736 (1157)
T ss_pred             H
Confidence            4

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=1.5e-32  Score=319.92  Aligned_cols=394  Identities=16%  Similarity=0.150  Sum_probs=313.4

Q ss_pred             hCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCC--------------------------
Q 005594           60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--------------------------  113 (689)
Q Consensus        60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------------------------  113 (689)
                      ..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..+                          
T Consensus       159 ~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l  238 (1157)
T PRK11447        159 LPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAAL  238 (1157)
T ss_pred             CCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHH
Confidence            346777777777777777777777777777777777777777777777654321                          


Q ss_pred             --------CCHHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHH
Q 005594          114 --------QNACA--------------------HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT  165 (689)
Q Consensus       114 --------~~~~~--------------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~  165 (689)
                              +....                    ...+|.++...|++++|+..|+++++.+|++..+       +..+|.
T Consensus       239 ~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a-------~~~Lg~  311 (1157)
T PRK11447        239 QKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEA-------LGALGQ  311 (1157)
T ss_pred             HHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHH
Confidence                    11100                    0123566667777777777777777777777654       666777


Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005594          166 SLKLAGNTQDGIQKYYEALKIDPHYAP--------------AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM  231 (689)
Q Consensus       166 ~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  231 (689)
                      ++...|++++|+..|+++++.+|++..              ....+|.++...|++++|+..|+++++.+|++..++..+
T Consensus       312 ~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~L  391 (1157)
T PRK11447        312 AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGL  391 (1157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            777778888888888888877776532              123446677778888888888888888888888899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH-----------------------------------HHhhhhh
Q 005594          232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL-----------------------------------TDLGTKV  276 (689)
Q Consensus       232 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-----------------------------------~~l~~~~  276 (689)
                      |.++...|++++|++.|+++++.+|++...+..++.++                                   ..++..+
T Consensus       392 g~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~  471 (1157)
T PRK11447        392 GDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL  471 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            99999999999999999999999999887766555443                                   2345667


Q ss_pred             hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594          277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC  356 (689)
Q Consensus       277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  356 (689)
                      ...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|+++..++.++..+...+++++|+..
T Consensus       472 ~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~  551 (1157)
T PRK11447        472 ENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAH  551 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999988888887778888877776


Q ss_pred             HHHH----------------------------------------HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005594          357 YQMA----------------------------------------LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA  396 (689)
Q Consensus       357 ~~~a----------------------------------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  396 (689)
                      ++++                                        ++..|.++..+..+|.++.+.|++++|+..|+++++
T Consensus       552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~  631 (1157)
T PRK11447        552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT  631 (1157)
T ss_pred             HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6542                                        234688888999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHHHHH
Q 005594          397 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR  462 (689)
Q Consensus       397 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (689)
                      .+|+++.++..++.++...|++++|++.++++++..|++..+...+  +..+...|+.+++.+..+
T Consensus       632 ~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~l--a~~~~~~g~~~eA~~~~~  695 (1157)
T PRK11447        632 REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRV--ALAWAALGDTAAAQRTFN  695 (1157)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHH--HHHHHhCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999988776553  445556677666554433

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=2.9e-32  Score=317.46  Aligned_cols=387  Identities=20%  Similarity=0.213  Sum_probs=324.1

Q ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 005594           50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE  129 (689)
Q Consensus        50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  129 (689)
                      ....++..+...|++++|+..+++.+...|.++..+..+|.++...|++++|+..|+++++.+|++..++..++.++...
T Consensus       433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  512 (899)
T TIGR02917       433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE  512 (899)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC
Confidence            34445556666666666666666666666777777777888888888888888888888888888777788888888888


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 005594          130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT  209 (689)
Q Consensus       130 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  209 (689)
                      |++++|+..|++++...|.+...       +..++.++...|++++|+..+++++..+|.+...+..++.++...|++++
T Consensus       513 g~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  585 (899)
T TIGR02917       513 GNPDDAIQRFEKVLTIDPKNLRA-------ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKK  585 (899)
T ss_pred             CCHHHHHHHHHHHHHhCcCcHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHH
Confidence            88888888888888777776554       55667777778888888888888888888888888888888888899999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHH
Q 005594          210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY  289 (689)
Q Consensus       210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  289 (689)
                      |+..++++++..|.+...+..+|.++...|++++|+..|+++++..|.+...+..+       +.++...|++++|+..+
T Consensus       586 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~  658 (899)
T TIGR02917       586 ALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL-------ADAYAVMKNYAKAITSL  658 (899)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH-------HHHHHHcCCHHHHHHHH
Confidence            99998888888888888899999999999999999999999988888876555444       44445567999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005594          290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ  369 (689)
Q Consensus       290 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  369 (689)
                      +++++.+|++..++..++.++...|++++|+..++.+.+..|.+...+..+|.++...|++++|++.|++++...|++ .
T Consensus       659 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~  737 (899)
T TIGR02917       659 KRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-Q  737 (899)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-h
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998887 7


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhc
Q 005594          370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI  449 (689)
Q Consensus       370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  449 (689)
                      .+..++.++...|++++|++.++++++..|++..++..+|.++...|++++|+..|+++++.+|+++.+..++.  ..+.
T Consensus       738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~--~~~~  815 (899)
T TIGR02917       738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLA--WLYL  815 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHH
Confidence            78889999999999999999999999999999999999999999999999999999999999999888776643  3444


Q ss_pred             cCCC
Q 005594          450 NEGH  453 (689)
Q Consensus       450 ~~~~  453 (689)
                      ..++
T Consensus       816 ~~~~  819 (899)
T TIGR02917       816 ELKD  819 (899)
T ss_pred             hcCc
Confidence            4555

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=1.8e-32  Score=298.62  Aligned_cols=364  Identities=10%  Similarity=-0.021  Sum_probs=327.5

Q ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005594           46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL  125 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  125 (689)
                      .....+...+..+...|++++|+.+++.++...|+++.+++.+|.+....|++++|+..|+++++.+|+++.++..+|.+
T Consensus        40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~  119 (656)
T PRK15174         40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV  119 (656)
T ss_pred             ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            34556778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005594          126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM  205 (689)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  205 (689)
                      +...|++++|+..|+++++++|++...       +..++.++...|++++|+..+++++...|++..++..++ .+...|
T Consensus       120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a-------~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g  191 (656)
T PRK15174        120 LLKSKQYATVADLAEQAWLAFSGNSQI-------FALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKS  191 (656)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcC
Confidence            999999999999999999999998776       667788888999999999999999999999998887765 488999


Q ss_pred             CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHH
Q 005594          206 QYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ  284 (689)
Q Consensus       206 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  284 (689)
                      ++++|+..++++++..| ........++.++...|++++|+..+++++...|++...+..++.++..       .|++++
T Consensus       192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-------~G~~~e  264 (656)
T PRK15174        192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-------SGRSRE  264 (656)
T ss_pred             CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCchh
Confidence            99999999999998875 3344556678899999999999999999999999987766665555555       567775


Q ss_pred             ----HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          285 ----GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA  360 (689)
Q Consensus       285 ----A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  360 (689)
                          |+..++++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++
T Consensus       265 A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a  344 (656)
T PRK15174        265 AKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL  344 (656)
T ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005594          361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR  436 (689)
Q Consensus       361 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  436 (689)
                      ++.+|++...+..+|.++...|++++|+..|+++++.+|++.            ...+++|+..|.++++..+...
T Consensus       345 l~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~~~~  408 (656)
T PRK15174        345 AREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVNLPP  408 (656)
T ss_pred             HHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcCCcc
Confidence            999999988888889999999999999999999999999864            3455677777877777665543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.5e-31  Score=292.88  Aligned_cols=364  Identities=20%  Similarity=0.179  Sum_probs=308.2

Q ss_pred             HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005594           82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT  161 (689)
Q Consensus        82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~  161 (689)
                      ...+..+|..++..|++++|+..|+++++..|+ +..+.++|.+|..+|++++|+..++++++++|++..+       +.
T Consensus       127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a-------~~  198 (615)
T TIGR00990       127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA-------LN  198 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH-------HH
Confidence            456778999999999999999999999999996 7789999999999999999999999999999998776       77


Q ss_pred             HhHHHHHHcCChHHHHHHHHHHHhhCCC------------------------------CHHHH-----------------
Q 005594          162 DLGTSLKLAGNTQDGIQKYYEALKIDPH------------------------------YAPAY-----------------  194 (689)
Q Consensus       162 ~l~~~~~~~~~~~~A~~~~~~al~~~~~------------------------------~~~~~-----------------  194 (689)
                      .+|.++...|++++|+..|..+...++.                              +...+                 
T Consensus       199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (615)
T TIGR00990       199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA  278 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence            7888888899999998877655433221                              11111                 


Q ss_pred             ----------------HHHHHHH---HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594          195 ----------------YNLGVVY---SELMQYDTALGCYEKAALE---RPMYAEAYCNMGVIYKNRGDLESAIACYERCL  252 (689)
Q Consensus       195 ----------------~~la~~~---~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  252 (689)
                                      ..++..+   ...+++++|++.|+++++.   .|....++..+|.++..+|++++|+..|++++
T Consensus       279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal  358 (615)
T TIGR00990       279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI  358 (615)
T ss_pred             hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                            1111111   1235799999999999986   47778899999999999999999999999999


Q ss_pred             hcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005594          253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH  332 (689)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  332 (689)
                      +++|+....+..++.++       ...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|+
T Consensus       359 ~l~P~~~~~~~~la~~~-------~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~  431 (615)
T TIGR00990       359 ELDPRVTQSYIKRASMN-------LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD  431 (615)
T ss_pred             HcCCCcHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence            99999876665555554       44679999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH------H
Q 005594          333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY------N  406 (689)
Q Consensus       333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~  406 (689)
                      +...+..+|.++..+|++++|+..|+++++..|+++.++..+|.++...|++++|++.|++++++.|++...+      .
T Consensus       432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~  511 (615)
T TIGR00990       432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI  511 (615)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998753322      2


Q ss_pred             HHH-HHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHHHHH
Q 005594          407 NLG-VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR  462 (689)
Q Consensus       407 ~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (689)
                      ..+ .++...|++++|++.++++++++|++..++..  ++..+...|+.+++.+..+
T Consensus       512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~--la~~~~~~g~~~eAi~~~e  566 (615)
T TIGR00990       512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT--MAQLLLQQGDVDEALKLFE  566 (615)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHccCHHHHHHHHH
Confidence            223 33445799999999999999999998876554  4566667777766655443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=1.6e-31  Score=291.23  Aligned_cols=366  Identities=12%  Similarity=0.020  Sum_probs=326.6

Q ss_pred             HhCCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 005594           59 RSRNKFVDALALYEIVLEK---DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA  135 (689)
Q Consensus        59 ~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  135 (689)
                      +++.+++.---++.+.-+.   ..++.......+..+...|++++|+..++.++...|+++.+++.+|.+....|++++|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A   95 (656)
T PRK15174         16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV   95 (656)
T ss_pred             hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence            3444554444444443332   2344556677788889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594          136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE  215 (689)
Q Consensus       136 ~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  215 (689)
                      +..++++++.+|++..+       +..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..++
T Consensus        96 ~~~l~~~l~~~P~~~~a-------~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~  168 (656)
T PRK15174         96 LQVVNKLLAVNVCQPED-------VLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLAR  168 (656)
T ss_pred             HHHHHHHHHhCCCChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence            99999999999999887       67788888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh
Q 005594          216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY  295 (689)
Q Consensus       216 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  295 (689)
                      +++...|++...+..++ .+...|++++|+..++++++..|......      ...++..+...|++++|+..+++++..
T Consensus       169 ~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~------~~~l~~~l~~~g~~~eA~~~~~~al~~  241 (656)
T PRK15174        169 TQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQES------AGLAVDTLCAVGKYQEAIQTGESALAR  241 (656)
T ss_pred             HHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhH------HHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            99999999998887764 48899999999999999998876432211      122344556688999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005594          296 NWHYADAMYNLGVAYGEMLKFDM----AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL  371 (689)
Q Consensus       296 ~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  371 (689)
                      +|+++.++..+|.++...|++++    |+..|+++++.+|++..++..+|.++...|++++|+..++++++++|+++.++
T Consensus       242 ~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~  321 (656)
T PRK15174        242 GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR  321 (656)
T ss_pred             CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            99999999999999999999986    89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005594          372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA  438 (689)
Q Consensus       372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  438 (689)
                      ..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|+..|+++++.+|++...
T Consensus       322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~  388 (656)
T PRK15174        322 AMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQ  388 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchh
Confidence            9999999999999999999999999999998888888999999999999999999999999997543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-30  Score=247.61  Aligned_cols=380  Identities=18%  Similarity=0.174  Sum_probs=319.0

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK  127 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  127 (689)
                      +..+-.+|+.++.+|+|++|+++|.++++..|+.+..|.+++-||...|++++.++...++++++|+...+++.++..+.
T Consensus       115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E  194 (606)
T KOG0547|consen  115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE  194 (606)
T ss_pred             HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence            44566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhc--------------------------------CCCCHHHHHHHHHHHHH-------------
Q 005594          128 DEGRLVEAAESYHKALSA--------------------------------DPSYKPAAECLAIVLTD-------------  162 (689)
Q Consensus       128 ~~g~~~~A~~~~~~al~~--------------------------------~p~~~~~~~~~a~~~~~-------------  162 (689)
                      ..|++++|+....-..-.                                .|.-+.+.. ++ .++.             
T Consensus       195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~f-i~-syf~sF~~~~~~~~~~~  272 (606)
T KOG0547|consen  195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATF-IA-SYFGSFHADPKPLFDNK  272 (606)
T ss_pred             hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHH-HH-HHHhhccccccccccCC
Confidence            999999997654322100                                011010000 00 0000             


Q ss_pred             -------hH--HHHHHc---CChHHHHHHHHHHHhhC----CCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          163 -------LG--TSLKLA---GNTQDGIQKYYEALKID----PHY---------APAYYNLGVVYSELMQYDTALGCYEKA  217 (689)
Q Consensus       163 -------l~--~~~~~~---~~~~~A~~~~~~al~~~----~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a  217 (689)
                             +.  .-....   ..|.+|...+.+.....    ..+         +.++...|..++-.|++-.|...++++
T Consensus       273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~  352 (606)
T KOG0547|consen  273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA  352 (606)
T ss_pred             CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence                   00  011111   24555555555544321    112         667788889999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC
Q 005594          218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW  297 (689)
Q Consensus       218 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  297 (689)
                      ++++|.....|..++.+|...++.++..+.|.++.+++|++++.++..+++++.+       +++++|+.-|++++.++|
T Consensus       353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL-------~q~e~A~aDF~Kai~L~p  425 (606)
T KOG0547|consen  353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL-------QQYEEAIADFQKAISLDP  425 (606)
T ss_pred             HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH-------HHHHHHHHHHHHHhhcCh
Confidence            9999999999999999999999999999999999999999998888777777765       599999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHH
Q 005594          298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQSL  371 (689)
Q Consensus       298 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~  371 (689)
                      ++.-.+..++.+.+++++++++...|+.+.+..|..++++...|.++..++++++|++.|.+++++.|.      ++..+
T Consensus       426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl  505 (606)
T KOG0547|consen  426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL  505 (606)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999998      66666


Q ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005594          372 NNLGVVYTV-QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR  436 (689)
Q Consensus       372 ~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  436 (689)
                      ...|.+..+ .+++.+|+.+++++++++|....++..||.+...+|+.++|+++|+++..+.-...
T Consensus       506 V~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~  571 (606)
T KOG0547|consen  506 VHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTES  571 (606)
T ss_pred             hhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Confidence            666555443 68999999999999999999999999999999999999999999999998765443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=100.00  E-value=2e-29  Score=280.90  Aligned_cols=409  Identities=15%  Similarity=0.092  Sum_probs=338.3

Q ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005594           46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL  125 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  125 (689)
                      .+....-....++...|++++|++.+.++...+|....++..+|.++...|++++|+..|+++++.+|.++.++..++.+
T Consensus        13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~   92 (765)
T PRK10049         13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT   92 (765)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45556666778889999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005594          126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM  205 (689)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  205 (689)
                      +...|++++|+..++++++..|++..        +..+|.++...|++++|+..++++++..|++..++..++.++...+
T Consensus        93 l~~~g~~~eA~~~l~~~l~~~P~~~~--------~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~  164 (765)
T PRK10049         93 LADAGQYDEALVKAKQLVSGAPDKAN--------LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR  164 (765)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            99999999999999999999999866        3445777778899999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhcCCCcHHHHhhHHHHHHH-
Q 005594          206 QYDTALGCYEKAALERPMYA-----EAYCNMGVIYK-----NRGDL---ESAIACYERCLAVSPNFEIAKNNMAIALTD-  271 (689)
Q Consensus       206 ~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~-----~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-  271 (689)
                      ..++|+..++++.. .|...     .....+..+..     ..+++   ++|++.++++++..|.++........+... 
T Consensus       165 ~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~  243 (765)
T PRK10049        165 LSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR  243 (765)
T ss_pred             ChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence            99999999998765 44321     11222222222     22334   789999999997765554433333333332 


Q ss_pred             hhhhhhhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHH
Q 005594          272 LGTKVKLEGDINQGVAYYKKALYYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKD  346 (689)
Q Consensus       272 l~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~  346 (689)
                      ++.+ ...+++++|+..|+++++..+..+ .+...+|.++...|++++|+..|+++++.+|.+    ......++.++..
T Consensus       244 l~~L-l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~  322 (765)
T PRK10049        244 LGAL-LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE  322 (765)
T ss_pred             HHHH-HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence            3323 456899999999999998865432 344557999999999999999999999988765    4567788888999


Q ss_pred             cCCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005594          347 RDNLDKAVECYQMALSIKPN---------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL  411 (689)
Q Consensus       347 ~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  411 (689)
                      .|++++|+..++++.+..|.               ...++..++.++...|++++|++.+++++...|++..++..+|.+
T Consensus       323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l  402 (765)
T PRK10049        323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASV  402 (765)
T ss_pred             cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999988763               235778899999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHHHHHHHHH
Q 005594          412 YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK  466 (689)
Q Consensus       412 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (689)
                      +...|++++|++.++++++++|++..+....  ++.++..++.+++....++...
T Consensus       403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~--a~~al~~~~~~~A~~~~~~ll~  455 (765)
T PRK10049        403 LQARGWPRAAENELKKAEVLEPRNINLEVEQ--AWTALDLQEWRQMDVLTDDVVA  455 (765)
T ss_pred             HHhcCCHHHHHHHHHHHHhhCCCChHHHHHH--HHHHHHhCCHHHHHHHHHHHHH
Confidence            9999999999999999999999998876654  4466666776666665555443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=100.00  E-value=1.2e-29  Score=282.59  Aligned_cols=381  Identities=15%  Similarity=0.070  Sum_probs=320.6

Q ss_pred             ccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005594           44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG  123 (689)
Q Consensus        44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  123 (689)
                      .+..+..+..+|..+...|++++|+..|+++++.+|.++.++..++.++...|++++|+..++++++.+|+++. +..+|
T Consensus        45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la  123 (765)
T PRK10049         45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA  123 (765)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence            34556678999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH-----HHHHHHH
Q 005594          124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYNLG  198 (689)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la  198 (689)
                      .++...|++++|+..++++++..|++...       +..++.++...+..++|+..++++.. .|...     .....+.
T Consensus       124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~-------~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~  195 (765)
T PRK10049        124 YVYKRAGRHWDELRAMTQALPRAPQTQQY-------PTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELV  195 (765)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999887       55567777788999999999987765 54421     1122222


Q ss_pred             HHHH-----HcCCH---HHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHh
Q 005594          199 VVYS-----ELMQY---DTALGCYEKAALERPMYAE-------AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN  263 (689)
Q Consensus       199 ~~~~-----~~g~~---~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  263 (689)
                      .+..     ..+++   ++|++.++++++..|.++.       +.......+...|++++|+..|+++++..+..+..  
T Consensus       196 r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~--  273 (765)
T PRK10049        196 RLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW--  273 (765)
T ss_pred             HhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH--
Confidence            2222     22345   7899999999976443322       22221223467799999999999999886432221  


Q ss_pred             hHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-------
Q 005594          264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-------  332 (689)
Q Consensus       264 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------  332 (689)
                          +...++.++...|++++|+..|+++++.+|.+    ......++.++...|++++|+..++++....|.       
T Consensus       274 ----a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~  349 (765)
T PRK10049        274 ----AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS  349 (765)
T ss_pred             ----HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC
Confidence                11113556666889999999999999888765    456777888899999999999999999998763       


Q ss_pred             --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 005594          333 --------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA  404 (689)
Q Consensus       333 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  404 (689)
                              ...++..++.++...|++++|++.+++++...|++..++..+|.++...|++++|++.++++++++|++..+
T Consensus       350 ~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l  429 (765)
T PRK10049        350 PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINL  429 (765)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH
Confidence                    245778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhH
Q 005594          405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG  439 (689)
Q Consensus       405 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  439 (689)
                      ++.+|.++..+|++++|...++++++..|+++.+.
T Consensus       430 ~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~  464 (765)
T PRK10049        430 EVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ  464 (765)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            99999999999999999999999999999998653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.98  E-value=6.4e-28  Score=267.99  Aligned_cols=158  Identities=13%  Similarity=0.019  Sum_probs=136.6

Q ss_pred             ccccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 005594           42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH  121 (689)
Q Consensus        42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  121 (689)
                      ....+.+..++..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|++...+..
T Consensus        38 ~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~  117 (987)
T PRK09782         38 DYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERS  117 (987)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH
Confidence            44557888999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH---------------------------------HHHhHHHHH
Q 005594          122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV---------------------------------LTDLGTSLK  168 (689)
Q Consensus       122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~---------------------------------~~~l~~~~~  168 (689)
                      ++.+    +++++|+..|+++++.+|++.+....++..                                 ...+..+|.
T Consensus       118 La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~  193 (987)
T PRK09782        118 LAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAI  193 (987)
T ss_pred             HHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHH
Confidence            8776    999999999999999999999988777765                                 122367888


Q ss_pred             HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005594          169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE  203 (689)
Q Consensus       169 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  203 (689)
                      .++++++|+..+.++++..|.+......++.+|..
T Consensus       194 ~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q  228 (987)
T PRK09782        194 YLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLA  228 (987)
T ss_pred             HHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            89999999999999888877665555444444443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.98  E-value=4e-29  Score=258.51  Aligned_cols=395  Identities=19%  Similarity=0.252  Sum_probs=330.3

Q ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594           46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI  124 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  124 (689)
                      ..++.++.+|+.+..+|+|++|..+|.++++.++++ .-.++.+|..++..|+++.|+.+|+++++..|++.+....+|.
T Consensus       305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~  384 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC  384 (1018)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            457789999999999999999999999999999988 7889999999999999999999999999999999999999999


Q ss_pred             HHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-------------------------------HHhHHHHHH
Q 005594          125 LYKDEG----RLVEAAESYHKALSADPSYKPAAECLAIVL-------------------------------TDLGTSLKL  169 (689)
Q Consensus       125 ~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-------------------------------~~l~~~~~~  169 (689)
                      +|...+    ..+.|..+..++++..|.+.+++..++.++                               .++|..++.
T Consensus       385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~  464 (1018)
T KOG2002|consen  385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR  464 (1018)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence            998876    678899999999999999988877776543                               456777777


Q ss_pred             cCChHHHHHHHHHHHhh-----CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005594          170 AGNTQDGIQKYYEALKI-----DPH-----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG  239 (689)
Q Consensus       170 ~~~~~~A~~~~~~al~~-----~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  239 (689)
                      .|++.+|...|.+++..     +++     +....+++|.++...++++.|.+.|..+++.+|...+++..+|.+....+
T Consensus       465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~  544 (1018)
T KOG2002|consen  465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN  544 (1018)
T ss_pred             hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc
Confidence            88888888888877765     111     12347788888888888888888888888888888888888887777777


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHh-----
Q 005594          240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGE-----  312 (689)
Q Consensus       240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~-----  312 (689)
                      +..+|...++.++..+..++.++..++       ..+.....+..|.+-|+..++...  .++.+...||+++++     
T Consensus       545 ~~~ea~~~lk~~l~~d~~np~arsl~G-------~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~  617 (1018)
T KOG2002|consen  545 NLYEASLLLKDALNIDSSNPNARSLLG-------NLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP  617 (1018)
T ss_pred             CcHHHHHHHHHHHhcccCCcHHHHHHH-------HHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence            888888888888888777776655444       344445566667666666554432  345667777777654     


Q ss_pred             -------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 005594          313 -------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD  385 (689)
Q Consensus       313 -------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  385 (689)
                             .+.+++|++.|.++++.+|.+..+-+.+|.++...|++.+|..+|.+..+.-.+...+|.++|.||..+|+|.
T Consensus       618 ~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~  697 (1018)
T KOG2002|consen  618 SRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR  697 (1018)
T ss_pred             ccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH
Confidence                   3457899999999999999999999999999999999999999999999887788899999999999999999


Q ss_pred             HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhh
Q 005594          386 AAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN  447 (689)
Q Consensus       386 ~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  447 (689)
                      .|++.|+.+++..  .++..++..||.++...|.+.+|.+...+++.+.|.++....|+.+.+.
T Consensus       698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~k  761 (1018)
T KOG2002|consen  698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLK  761 (1018)
T ss_pred             HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHH
Confidence            9999999999874  3668999999999999999999999999999999999999998876544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.4e-27  Score=247.19  Aligned_cols=386  Identities=21%  Similarity=0.249  Sum_probs=331.0

Q ss_pred             cCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005594           45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG  123 (689)
Q Consensus        45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  123 (689)
                      +.++-.++..|.+.+.+|+|..|+.+|++++..+|.. ++....+|.|+.++|+.+.|+..|+++++++|.+..++..||
T Consensus       161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~  240 (1018)
T KOG2002|consen  161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG  240 (1018)
T ss_pred             CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence            4566778889999999999999999999999988864 567788899999999999999999999999999999998888


Q ss_pred             HHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC---CHHHHHHH
Q 005594          124 ILYKDEG---RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---YAPAYYNL  197 (689)
Q Consensus       124 ~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l  197 (689)
                      .+-....   .+..+...+.++...++.++.+       +..++..++..|+++.+..+...++.....   .++.++.+
T Consensus       241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~-------l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~  313 (1018)
T KOG2002|consen  241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVA-------LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQL  313 (1018)
T ss_pred             HHHHHccchHHHHHHHHHHHHHHhhcCCCcHH-------HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            8776654   4677888899999999999887       777888888889999999999988877533   35679999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhh
Q 005594          198 GVVYSELMQYDTALGCYEKAALERPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV  276 (689)
Q Consensus       198 a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~  276 (689)
                      |.+|..+|++++|..+|.++++.++++ .-.++.+|+++...|+++.|+.+|++.++..|++.+....++..|...+   
T Consensus       314 gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~---  390 (1018)
T KOG2002|consen  314 GRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA---  390 (1018)
T ss_pred             HHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh---
Confidence            999999999999999999999999887 7788899999999999999999999999999999888888777776654   


Q ss_pred             hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHH
Q 005594          277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-----NPHCAEACNNLGVIYKDRDNLD  351 (689)
Q Consensus       277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~  351 (689)
                      ......++|..++.++++..|.+.++|..++.++....-+.. +..|.+++..     .+--++.++++|..++..|+++
T Consensus       391 ~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~  469 (1018)
T KOG2002|consen  391 KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE  469 (1018)
T ss_pred             hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence            234467889999999999999999999999998876665555 8888888854     3445889999999999999999


Q ss_pred             HHHHHHHHHHhc-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 005594          352 KAVECYQMALSI-----KPNF-----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA  421 (689)
Q Consensus       352 ~A~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  421 (689)
                      +|...|.+|+..     +++.     ....+++|.++...++++.|.+.|...++.+|...+++..+|......++..+|
T Consensus       470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea  549 (1018)
T KOG2002|consen  470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEA  549 (1018)
T ss_pred             HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHH
Confidence            999999999876     2222     235889999999999999999999999999999999999999888889999999


Q ss_pred             HHHHHHHHhcCCCChhhHhh
Q 005594          422 IDAYEQCLKIDPDSRNAGQN  441 (689)
Q Consensus       422 ~~~~~~al~~~p~~~~~~~~  441 (689)
                      ...++.++..+..++.++.-
T Consensus       550 ~~~lk~~l~~d~~np~arsl  569 (1018)
T KOG2002|consen  550 SLLLKDALNIDSSNPNARSL  569 (1018)
T ss_pred             HHHHHHHHhcccCCcHHHHH
Confidence            99999999999999988764

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.1e-27  Score=231.56  Aligned_cols=389  Identities=21%  Similarity=0.229  Sum_probs=332.1

Q ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005594           49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD  128 (689)
Q Consensus        49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  128 (689)
                      ..+...|+..+..|+|+.|+.+|.+++.++|.|...+.+...+|..+|+|++|++.-.+..+++|+.+..|..+|..+..
T Consensus         3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~   82 (539)
T KOG0548|consen    3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG   82 (539)
T ss_pred             hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHH---------HHH-cCC-------hHHHHHHHHHHHhh-----
Q 005594          129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS---------LKL-AGN-------TQDGIQKYYEALKI-----  186 (689)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~---------~~~-~~~-------~~~A~~~~~~al~~-----  186 (689)
                      .|+|++|+..|.+.++.+|++......++.+.......         +.. .++       .+.+.....+.+..     
T Consensus        83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l  162 (539)
T KOG0548|consen   83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL  162 (539)
T ss_pred             cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence            99999999999999999999988877776655211000         000 000       00000000001100     


Q ss_pred             ------------------------------------CCC---------------------CHHHHHHHHHHHHHcCCHHH
Q 005594          187 ------------------------------------DPH---------------------YAPAYYNLGVVYSELMQYDT  209 (689)
Q Consensus       187 ------------------------------------~~~---------------------~~~~~~~la~~~~~~g~~~~  209 (689)
                                                          .|.                     .......+|...+...++..
T Consensus       163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~  242 (539)
T KOG0548|consen  163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET  242 (539)
T ss_pred             hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence                                                110                     02345678999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHH
Q 005594          210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY  289 (689)
Q Consensus       210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  289 (689)
                      |++.|.+++.++ .+...+.+.+-+|...|.+.+.+.....+++...........++.++..+|..+...++++.++.+|
T Consensus       243 a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~  321 (539)
T KOG0548|consen  243 AIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY  321 (539)
T ss_pred             HHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence            999999999999 8889999999999999999999999999998887777777788999999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005594          290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ  369 (689)
Q Consensus       290 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  369 (689)
                      ++++.....        ..+.......++++...+...-++|.-..--...|..++..|+|..|+..|.++++.+|+++.
T Consensus       322 ~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~  393 (539)
T KOG0548|consen  322 QKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR  393 (539)
T ss_pred             HHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence            998876554        455666777888888888888888888888888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHh
Q 005594          370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM  446 (689)
Q Consensus       370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  446 (689)
                      .+.+.|.||.++|.+..|+...+.+++++|+...+|..-|.++..+.+|++|.+.|+++++++|++..+...+.-++
T Consensus       394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~  470 (539)
T KOG0548|consen  394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCV  470 (539)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988876654443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.96  E-value=6.6e-26  Score=252.01  Aligned_cols=358  Identities=13%  Similarity=0.051  Sum_probs=210.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCC------
Q 005594           61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGR------  131 (689)
Q Consensus        61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~------  131 (689)
                      .+.+.+|....+...+..|.+...+..++......|++++|...|+.+....++.   ......++.+|...+.      
T Consensus       355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  434 (987)
T PRK09782        355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK  434 (987)
T ss_pred             cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence            3555555555555555556666666666666666666666666666666542211   1122244444444332      


Q ss_pred             -------------------HHH---HHHHHHHHHhcCCC--CHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC
Q 005594          132 -------------------LVE---AAESYHKALSADPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID  187 (689)
Q Consensus       132 -------------------~~~---A~~~~~~al~~~p~--~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  187 (689)
                                         +.+   +...+.+++...|.  +..+       +..+|.++.. ++..+|+..+.+++...
T Consensus       435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a-------~~~LG~~l~~-~~~~eAi~a~~~Al~~~  506 (987)
T PRK09782        435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAA-------WNRLAKCYRD-TLPGVALYAWLQAEQRQ  506 (987)
T ss_pred             HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHH-------HHHHHHHHHh-CCcHHHHHHHHHHHHhC
Confidence                               111   22222233333333  3332       5555555554 56666666666666666


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 005594          188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI  267 (689)
Q Consensus       188 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  267 (689)
                      |++. ....+|.++...|++++|+..+++++...|.. ..+..+|.++...|++++|+.+++++++..|........   
T Consensus       507 Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~---  581 (987)
T PRK09782        507 PDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWW---  581 (987)
T ss_pred             CchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHH---
Confidence            6543 24445555566666666666666665554432 345566666666666666666666666666554332221   


Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005594          268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR  347 (689)
Q Consensus       268 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  347 (689)
                          ++......|++++|+..++++++.+|+ ...+..+|.++.+.|++++|+..|+++++.+|+++.++.++|.++...
T Consensus       582 ----La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~  656 (987)
T PRK09782        582 ----LHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS  656 (987)
T ss_pred             ----HHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence                122222345666666666666666664 666666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594          348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ  427 (689)
Q Consensus       348 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  427 (689)
                      |++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++++|+++.+....|.+.....+++.|.+.+++
T Consensus       657 G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r  736 (987)
T PRK09782        657 GDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGR  736 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHhcCCCCh
Q 005594          428 CLKIDPDSR  436 (689)
Q Consensus       428 al~~~p~~~  436 (689)
                      ...++|+..
T Consensus       737 ~~~~~~~~~  745 (987)
T PRK09782        737 RWTFSFDSS  745 (987)
T ss_pred             HhhcCccch
Confidence            666666654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=7.3e-27  Score=233.61  Aligned_cols=307  Identities=20%  Similarity=0.278  Sum_probs=276.3

Q ss_pred             HHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 005594          117 CAHTHCGILYKD--EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY  194 (689)
Q Consensus       117 ~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  194 (689)
                      ..+..+|..|..  +-+..+|+..|++.-...++..       .++.++|..|+.+++|++|.++|+.+-+..|-..+..
T Consensus       318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~-------wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~m  390 (638)
T KOG1126|consen  318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTG-------WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGM  390 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccch
Confidence            345555655544  5567899999999555555543       3488899999999999999999999999999877777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhh
Q 005594          195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT  274 (689)
Q Consensus       195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~  274 (689)
                      -....+++.+.+--+---+.+..++.+|+.++.|..+|.+|..+++++.|+++|+++++++|.+..       +|..+|.
T Consensus       391 eiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY-------ayTLlGh  463 (638)
T KOG1126|consen  391 EIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY-------AYTLLGH  463 (638)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch-------hhhhcCC
Confidence            777777887777666666677788999999999999999999999999999999999999998754       4555666


Q ss_pred             hhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005594          275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV  354 (689)
Q Consensus       275 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  354 (689)
                      -+....+++.|...|++++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+
T Consensus       464 E~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL  543 (638)
T KOG1126|consen  464 ESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKAL  543 (638)
T ss_pred             hhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHH
Confidence            66778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594          355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD  434 (689)
Q Consensus       355 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  434 (689)
                      .+|++|+.++|.++-..+..|.++...+++++|+..+++.-++.|+...+++.+|++|.++|+.+.|+..|.-|+.++|.
T Consensus       544 ~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk  623 (638)
T KOG1126|consen  544 QLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK  623 (638)
T ss_pred             HHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Chh
Q 005594          435 SRN  437 (689)
Q Consensus       435 ~~~  437 (689)
                      -.+
T Consensus       624 g~~  626 (638)
T KOG1126|consen  624 GAQ  626 (638)
T ss_pred             cch
Confidence            655

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.2e-25  Score=215.65  Aligned_cols=361  Identities=19%  Similarity=0.199  Sum_probs=286.8

Q ss_pred             HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005594           83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD  162 (689)
Q Consensus        83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~  162 (689)
                      ..+-..|.-++..|+|++|+++|.+++++.|+.+..+.+++.||...|++++.++...++++++|+...+       ++.
T Consensus       116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KA-------l~R  188 (606)
T KOG0547|consen  116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKA-------LLR  188 (606)
T ss_pred             HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHH-------HHH
Confidence            3456678889999999999999999999999999999999999999999999999999999999998777       555


Q ss_pred             hHHHHHHcCChHHHHHHH------------------HHHHhh--------------CCCCH-------------------
Q 005594          163 LGTSLKLAGNTQDGIQKY------------------YEALKI--------------DPHYA-------------------  191 (689)
Q Consensus       163 l~~~~~~~~~~~~A~~~~------------------~~al~~--------------~~~~~-------------------  191 (689)
                      .+..+...|++.+|+.-.                  ++.++.              .|.-+                   
T Consensus       189 RA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~  268 (606)
T KOG0547|consen  189 RASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL  268 (606)
T ss_pred             HHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence            555566666666665432                  222211              11110                   


Q ss_pred             --------HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC----CCC---------HHHHHHHHHHHHHcCCHHHHHHH
Q 005594          192 --------PAYYNLGVVYSELM---QYDTALGCYEKAALER----PMY---------AEAYCNMGVIYKNRGDLESAIAC  247 (689)
Q Consensus       192 --------~~~~~la~~~~~~g---~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~  247 (689)
                              ++...-+.-+...+   .|.+|...+.+.....    ..+         +.++...|..++-.|++-.|...
T Consensus       269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d  348 (606)
T KOG0547|consen  269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED  348 (606)
T ss_pred             ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence                    11111111111222   5666666666554321    112         56778888888999999999999


Q ss_pred             HHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005594          248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF  327 (689)
Q Consensus       248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  327 (689)
                      |++++.++|.+...       |..++.+|...++.++....|.++..++|+++++|+..|.+++-++++++|+.-|++++
T Consensus       349 ~~~~I~l~~~~~~l-------yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai  421 (606)
T KOG0547|consen  349 FDAAIKLDPAFNSL-------YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI  421 (606)
T ss_pred             HHHHHhcCcccchH-------HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999987754       45555666668899999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------c
Q 005594          328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------Y  401 (689)
Q Consensus       328 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~  401 (689)
                      +++|++...+..++.+.++++++++++..|+.+.+..|+.++++...|.++..++++++|++.|.+++++.|.      +
T Consensus       422 ~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~  501 (606)
T KOG0547|consen  422 SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN  501 (606)
T ss_pred             hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998      5


Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHH
Q 005594          402 AEAYNNLGVLY-RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE  459 (689)
Q Consensus       402 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (689)
                      +..+...|.+. .-.+++..|.+.+++|+++||....+...+.  ..-+..+..+++++
T Consensus       502 ~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tla--q~~lQ~~~i~eAie  558 (606)
T KOG0547|consen  502 AAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLA--QFELQRGKIDEAIE  558 (606)
T ss_pred             chhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHH--HHHHHHhhHHHHHH
Confidence            54444444332 2358999999999999999999988876643  22334444444433

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.3e-25  Score=218.07  Aligned_cols=388  Identities=21%  Similarity=0.241  Sum_probs=327.4

Q ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHH------HHcCCCC----
Q 005594           46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA------VKLDPQN----  115 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~----  115 (689)
                      .++...+.+|++++-.|+|..|..+...- +.+..+....+..+.|+....++++|...+.+.      +..+|.+    
T Consensus        47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~  125 (611)
T KOG1173|consen   47 NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT  125 (611)
T ss_pred             CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence            67888999999999999999998887765 555667888999999999999999999888733      1112211    


Q ss_pred             ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH----------------------
Q 005594          116 ---------------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI----------------------  158 (689)
Q Consensus       116 ---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~----------------------  158 (689)
                                     ....+.+|.+|....+.++|...|.+++..++...++...+..                      
T Consensus       126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~  205 (611)
T KOG1173|consen  126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLT  205 (611)
T ss_pred             eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhh
Confidence                           2345677888999999999999999999887776555333222                      


Q ss_pred             ----------------------------------------HHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 005594          159 ----------------------------------------VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG  198 (689)
Q Consensus       159 ----------------------------------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  198 (689)
                                                              ++...+..++..+++.+..+..+..++.+|-+...+-..-
T Consensus       206 ~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~i  285 (611)
T KOG1173|consen  206 KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHI  285 (611)
T ss_pred             hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHH
Confidence                                                    1122445566777888888888888888888776665444


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 005594          199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL  278 (689)
Q Consensus       199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~  278 (689)
                      -++.++|+..+-...-.+.++..|+.+-.|+..|..|...|++.+|.++|.++..++|....+|...+.++..       
T Consensus       286 a~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~-------  358 (611)
T KOG1173|consen  286 ACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG-------  358 (611)
T ss_pred             HHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh-------
Confidence            4888888888888888888888999999999999999999999999999999999999998877766665554       


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594          279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ  358 (689)
Q Consensus       279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  358 (689)
                      .+..++|+..|..|-++.|..-.....+|.-|...++++.|.++|.+++.+.|.++.++..+|.+.+..+.|.+|..+|+
T Consensus       359 e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~  438 (611)
T KOG1173|consen  359 EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQ  438 (611)
T ss_pred             cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHH
Confidence            67999999999999999999888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcC----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          359 MALSIK----PN---FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI  431 (689)
Q Consensus       359 ~al~~~----p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  431 (689)
                      +++..-    ++   ....+.+||.++.+++++++|+.++++++.+.|.++.++..+|.+|..+|+++.|+++|.++|.+
T Consensus       439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l  518 (611)
T KOG1173|consen  439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL  518 (611)
T ss_pred             HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence            999432    11   23468999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChhhHhh
Q 005594          432 DPDSRNAGQN  441 (689)
Q Consensus       432 ~p~~~~~~~~  441 (689)
                      +|++..+..-
T Consensus       519 ~p~n~~~~~l  528 (611)
T KOG1173|consen  519 KPDNIFISEL  528 (611)
T ss_pred             CCccHHHHHH
Confidence            9999665443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=8.3e-25  Score=208.76  Aligned_cols=363  Identities=17%  Similarity=0.156  Sum_probs=234.9

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHH
Q 005594           51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--QNACAHTHCGILYKD  128 (689)
Q Consensus        51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~  128 (689)
                      ++..|.++.+.|....|++.|..++...|-+..+|..++.+....       +........-|  .+...-..++.++..
T Consensus       167 lYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~-------e~~~~l~~~l~~~~h~M~~~F~~~a~~e  239 (559)
T KOG1155|consen  167 LYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI-------EILSILVVGLPSDMHWMKKFFLKKAYQE  239 (559)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH-------HHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence            444555555666666666666666555565555555555543221       11112221122  222233344555555


Q ss_pred             cCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 005594          129 EGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY  207 (689)
Q Consensus       129 ~g~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  207 (689)
                      ..+.++++.-++..... .|.+.-.       -...|.+...+.++++|+..|+...+.+|-..+-.-...++++-.++-
T Consensus       240 l~q~~e~~~k~e~l~~~gf~~~~~i-------~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~  312 (559)
T KOG1155|consen  240 LHQHEEALQKKERLSSVGFPNSMYI-------KTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK  312 (559)
T ss_pred             HHHHHHHHHHHHHHHhccCCccHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence            55666666666666665 4444332       334455555667777777777777777776655555556666655555


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHH
Q 005594          208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA  287 (689)
Q Consensus       208 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  287 (689)
                      .+-.-+.+.+.+++.-.++....+|+.|...++.++|+.+|+++++++|+...+|..++.       -+...++...|++
T Consensus       313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGH-------EyvEmKNt~AAi~  385 (559)
T KOG1155|consen  313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGH-------EYVEMKNTHAAIE  385 (559)
T ss_pred             HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhH-------HHHHhcccHHHHH
Confidence            554455555666666666677777777777777777777777777777776555444433       3334567777777


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005594          288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF  367 (689)
Q Consensus       288 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  367 (689)
                      .|++|++++|.+-.+|+.+|..|.-++...=|+-+|+++.+..|.+...|..||.+|.+.++.++|+++|.+++.....+
T Consensus       386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte  465 (559)
T KOG1155|consen  386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE  465 (559)
T ss_pred             HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594          368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD  434 (689)
Q Consensus       368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  434 (689)
                      ..++..+|.+|.++++.++|..+|++.++       ..|+...+...|+..+.+.+++++|..+..+++.-++.
T Consensus       466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e  539 (559)
T KOG1155|consen  466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE  539 (559)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence            77777777777777777777777777776       24445566666777777777777777777776665443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.96  E-value=4e-24  Score=233.10  Aligned_cols=389  Identities=13%  Similarity=0.013  Sum_probs=273.9

Q ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005594           46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL  125 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  125 (689)
                      ..++..+..+.+.+++|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|.....+..+|.+
T Consensus        32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~l  111 (822)
T PRK14574         32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARA  111 (822)
T ss_pred             cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence            46778899999999999999999999999999999965555888888999999999999999994445555566666889


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005594          126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM  205 (689)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  205 (689)
                      +..+|++++|++.|+++++.+|+++..       +..++..+...++.++|++.++++...+|..... ..++.++...+
T Consensus       112 y~~~gdyd~Aiely~kaL~~dP~n~~~-------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~  183 (822)
T PRK14574        112 YRNEKRWDQALALWQSSLKKDPTNPDL-------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATD  183 (822)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcc
Confidence            999999999999999999999999776       4566777888899999999999999999986554 66677776778


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH------------------------------------
Q 005594          206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE------------------------------------  249 (689)
Q Consensus       206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~------------------------------------  249 (689)
                      +..+|++.++++++.+|++.+.+..+..++...|-...|.+..+                                    
T Consensus       184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r  263 (822)
T PRK14574        184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETER  263 (822)
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence            88789999999999999999988888887777766555554433                                    


Q ss_pred             ------------HHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCH
Q 005594          250 ------------RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKF  316 (689)
Q Consensus       250 ------------~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~  316 (689)
                                  ..+...+..+........+....-..+...+++.+++..|+...... +--..+....|..|...++.
T Consensus       264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P  343 (822)
T PRK14574        264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP  343 (822)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence                        22321222111111111111122222334556666666666655443 22334556666666677777


Q ss_pred             HHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------CCHHHHHHHH
Q 005594          317 DMAIVFYELAFHFNP------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---------------NFSQSLNNLG  375 (689)
Q Consensus       317 ~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~la  375 (689)
                      ++|+.+|++++...+      ........|...+...+++++|..++++..+..|               +..++...++
T Consensus       344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a  423 (822)
T PRK14574        344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV  423 (822)
T ss_pred             HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence            777777766665432      2233345566666666677777666666665322               2234555666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhH
Q 005594          376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR  442 (689)
Q Consensus       376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  442 (689)
                      .++...|++.+|++.+++.+...|.+..++..+|.++...|++.+|.+.++.++.++|++..+....
T Consensus       424 ~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~  490 (822)
T PRK14574        424 QSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ  490 (822)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence            6666667777777777776666676666666777777777777777777766666666666665544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=4.2e-24  Score=204.02  Aligned_cols=374  Identities=19%  Similarity=0.185  Sum_probs=274.7

Q ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHH-------------------HHHHHHHH
Q 005594           47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR-------------------LAFDSFSE  107 (689)
Q Consensus        47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~-------------------~A~~~~~~  107 (689)
                      .....+.+|..++..+.|+.|.-.++....     ....+..-.+.+..|..+                   ..+..+.+
T Consensus        77 ~~~~~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~  151 (559)
T KOG1155|consen   77 LEKDIYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNK  151 (559)
T ss_pred             hhcchhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhh
Confidence            345678899999999999999998887644     222222222222222211                   12222222


Q ss_pred             HHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---------------------
Q 005594          108 AVKL----DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD---------------------  162 (689)
Q Consensus       108 al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~---------------------  162 (689)
                      -++.    ...++..++..|.++.+.|....|+..+..++...|-+-.+|..+..+...                     
T Consensus       152 ~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~  231 (559)
T KOG1155|consen  152 PLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKF  231 (559)
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHH
Confidence            2221    234577888999999999999999999999999999988887665543221                     


Q ss_pred             -hHHHHHHcCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005594          163 -LGTSLKLAGNTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD  240 (689)
Q Consensus       163 -l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  240 (689)
                       ++.++....+.++++.-++..... .|.+...-...|.+.+.+.++++|+..|+...+.+|-..+-.-...+++.-.++
T Consensus       232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~  311 (559)
T KOG1155|consen  232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND  311 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence             223333334445555555554444 455555555555555555555555555555555555444444444444444443


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005594          241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI  320 (689)
Q Consensus       241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  320 (689)
                      -.+-.-..+.+..++.-.++       ...-+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+
T Consensus       312 ~skLs~LA~~v~~idKyR~E-------TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi  384 (559)
T KOG1155|consen  312 KSKLSYLAQNVSNIDKYRPE-------TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAI  384 (559)
T ss_pred             hHHHHHHHHHHHHhccCCcc-------ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHH
Confidence            33322333333333322221       22335666777889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594          321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT  400 (689)
Q Consensus       321 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  400 (689)
                      +.|++|++++|.+-.+|+.+|..|.-++...=|+-+|++|++..|+++..|..||.||.+.++.++|+++|.+++.....
T Consensus       385 ~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt  464 (559)
T KOG1155|consen  385 ESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT  464 (559)
T ss_pred             HHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594          401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKID  432 (689)
Q Consensus       401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  432 (689)
                      +..++..||++|.++++.++|..+|++.++..
T Consensus       465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999843

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.95  E-value=8.3e-25  Score=200.68  Aligned_cols=323  Identities=19%  Similarity=0.225  Sum_probs=241.1

Q ss_pred             cCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594           45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI  124 (689)
Q Consensus        45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  124 (689)
                      ..+++..+++|..++..|++..|+..|..+++.+|++..+++..|.+|+.+|+-.-|+..+.+++++.|+...+....|.
T Consensus        35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~  114 (504)
T KOG0624|consen   35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV  114 (504)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence            35788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHH---HHHHH-----HHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 005594          125 LYKDEGRLVEAAESYHKALSADPSYKPAA---ECLAI-----VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN  196 (689)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~a~-----~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  196 (689)
                      +++++|++++|...|++++..+|++....   ..++.     .+......+...|+...|+......+++.|-++..+..
T Consensus       115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~  194 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA  194 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence            99999999999999999999999654432   22222     23334556677899999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH---HHH--H
Q 005594          197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI---ALT--D  271 (689)
Q Consensus       197 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~--~  271 (689)
                      .+.||...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+..+-.   +-.  .
T Consensus       195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~le  274 (504)
T KOG0624|consen  195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLE  274 (504)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999997643321111   000  0


Q ss_pred             hhhhhhhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005594          272 LGTKVKLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR  347 (689)
Q Consensus       272 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  347 (689)
                      -.......+++.++++..++.++.+|..+.    ....+..++...+++.+|+....+++.++|++..++...+..|+..
T Consensus       275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d  354 (504)
T KOG0624|consen  275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD  354 (504)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence            011122234444444444444444444221    2222333444444444444444444444444444444444444444


Q ss_pred             CCHHHHHHHHHHHHhcCCCC
Q 005594          348 DNLDKAVECYQMALSIKPNF  367 (689)
Q Consensus       348 g~~~~A~~~~~~al~~~p~~  367 (689)
                      ..|+.|+..|++|.+.++++
T Consensus       355 E~YD~AI~dye~A~e~n~sn  374 (504)
T KOG0624|consen  355 EMYDDAIHDYEKALELNESN  374 (504)
T ss_pred             HHHHHHHHHHHHHHhcCccc
Confidence            44444444444444444443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.95  E-value=2.2e-24  Score=222.31  Aligned_cols=376  Identities=15%  Similarity=0.126  Sum_probs=305.8

Q ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005594           46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL  125 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  125 (689)
                      .+...++..|+.++..|++++|..++.++++.+|.++.+|+.+|.+|..+|+.+++...+-.|-.++|++.+.|..++..
T Consensus       137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl  216 (895)
T KOG2076|consen  137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL  216 (895)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHH
Q 005594          126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVV  200 (689)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~  200 (689)
                      ..++|++++|.-+|.++++.+|.+...       ....+.++.+.|+...|...|.+++...|..     .......+..
T Consensus       217 s~~~~~i~qA~~cy~rAI~~~p~n~~~-------~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~  289 (895)
T KOG2076|consen  217 SEQLGNINQARYCYSRAIQANPSNWEL-------IYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY  289 (895)
T ss_pred             HHhcccHHHHHHHHHHHHhcCCcchHH-------HHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence            999999999999999999999999776       6667777888899999999999999999832     2233455778


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHH----------------
Q 005594          201 YSELMQYDTALGCYEKAALER--PMYAEAYCNMGVIYKNRGDLESAIACYERCLAV--SPNFEI----------------  260 (689)
Q Consensus       201 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~----------------  260 (689)
                      +...++-+.|++.++.++...  ....+-+..++.++.....++.|..........  .+++..                
T Consensus       290 ~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~  369 (895)
T KOG2076|consen  290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE  369 (895)
T ss_pred             HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence            888888899999999999843  234456778899999999999999887766541  111100                


Q ss_pred             ----HHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CH
Q 005594          261 ----AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CA  334 (689)
Q Consensus       261 ----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~  334 (689)
                          ....+-.+...++.+.....+..+++..+..--...+ +.++.+..++.++...|++.+|+.++..+....+. +.
T Consensus       370 ~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~  449 (895)
T KOG2076|consen  370 VGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA  449 (895)
T ss_pred             CCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence                0111111344555555566666666665544333333 35678999999999999999999999999887654 47


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------HHHH
Q 005594          335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---------AEAY  405 (689)
Q Consensus       335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~  405 (689)
                      .+|+.+|.+|..+|.+++|+++|++++...|++.++...|+.++.++|+.++|.+.+++...-++.+         ....
T Consensus       450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~  529 (895)
T KOG2076|consen  450 FVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL  529 (895)
T ss_pred             hhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence            7999999999999999999999999999999999999999999999999999999998876333222         3466


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Q 005594          406 NNLGVLYRDAGSISLAIDAYEQC  428 (689)
Q Consensus       406 ~~la~~~~~~g~~~~A~~~~~~a  428 (689)
                      .....++...|+.++=+..-...
T Consensus       530 ~~r~d~l~~~gk~E~fi~t~~~L  552 (895)
T KOG2076|consen  530 AHRCDILFQVGKREEFINTASTL  552 (895)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHH
Confidence            78888999999988855544433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=6.4e-26  Score=226.91  Aligned_cols=295  Identities=19%  Similarity=0.216  Sum_probs=224.4

Q ss_pred             hCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChH
Q 005594           95 QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ  174 (689)
Q Consensus        95 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~  174 (689)
                      +-+..+|+..|++.-...++...++..+|..|+.+++|++|.++|+.+-+..|-..+....+..++..+       .+--
T Consensus       332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL-------q~~v  404 (638)
T KOG1126|consen  332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL-------QDEV  404 (638)
T ss_pred             HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH-------HhhH
Confidence            345567777777755666666677777777777777777777777777777776555433333333332       2222


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV  254 (689)
Q Consensus       175 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  254 (689)
                      +--.+.+..++.+|+.++.|..+|+||.-+++++.|+++|+++++++|....+|..+|.-+....++++|..+|++++..
T Consensus       405 ~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~  484 (638)
T KOG1126|consen  405 ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV  484 (638)
T ss_pred             HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence            22233345666778888888888888888888888888888888888887888888888888888888888888888888


Q ss_pred             CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 005594          255 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA  334 (689)
Q Consensus       255 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  334 (689)
                      +|.+..+|+.++.+|..       +++++.|.-.|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++
T Consensus       485 ~~rhYnAwYGlG~vy~K-------qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~  557 (638)
T KOG1126|consen  485 DPRHYNAWYGLGTVYLK-------QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP  557 (638)
T ss_pred             CchhhHHHHhhhhheec-------cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence            88888888888877766       45788888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 005594          335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE  403 (689)
Q Consensus       335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  403 (689)
                      -..+..|.++...+++++|+..+++..++-|+...++..+|.+|.+.|+.+.|+..|.-|..++|.-.+
T Consensus       558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            888888888888888888888888888888888888888888888888888888888888888886444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.95  E-value=2.6e-24  Score=224.39  Aligned_cols=308  Identities=20%  Similarity=0.173  Sum_probs=199.9

Q ss_pred             HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005594           82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT  161 (689)
Q Consensus        82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~  161 (689)
                      ....+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.....   .     
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~-----  106 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ---R-----  106 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH---H-----
Confidence            34455566667777777777777777777777777777777777777777777777777666532221110   1     


Q ss_pred             HhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005594          162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL  241 (689)
Q Consensus       162 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  241 (689)
                                                   ..++..+|.+|...|++++|+..|+++++..|.+..++..++.++...|++
T Consensus       107 -----------------------------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~  157 (389)
T PRK11788        107 -----------------------------LLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDW  157 (389)
T ss_pred             -----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchH
Confidence                                         123455555555566666666666666555555555666666666666666


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005594          242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV  321 (689)
Q Consensus       242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  321 (689)
                      ++|++.++++++..|.....  ..+..+..++..+...+++++|+..++++++..|+...++..+|.++...|++++|++
T Consensus       158 ~~A~~~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  235 (389)
T PRK11788        158 QKAIDVAERLEKLGGDSLRV--EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE  235 (389)
T ss_pred             HHHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            66666666665555443211  1222344455555556666667666766666666667777778888888888888888


Q ss_pred             HHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594          322 FYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT  400 (689)
Q Consensus       322 ~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  400 (689)
                      .++++++.+|.+ ..++..++.++...|++++|+..++++++..|+.... ..++.++.+.|++++|+..++++++..|+
T Consensus       236 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~  314 (389)
T PRK11788        236 ALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPS  314 (389)
T ss_pred             HHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcC
Confidence            888888777665 4556777788888888888888888888877766443 77788888888888888888888888887


Q ss_pred             cHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 005594          401 YAEAYNNLGVLYRD--AGSISLAIDAYEQCL  429 (689)
Q Consensus       401 ~~~~~~~la~~~~~--~g~~~~A~~~~~~al  429 (689)
                      +......++..+..  .|+..+|+..+++.+
T Consensus       315 ~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~  345 (389)
T PRK11788        315 LRGFHRLLDYHLAEAEEGRAKESLLLLRDLV  345 (389)
T ss_pred             HHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence            76555444433322  446777776666555

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.95  E-value=6.6e-25  Score=208.28  Aligned_cols=405  Identities=19%  Similarity=0.221  Sum_probs=309.4

Q ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC-----HHHH
Q 005594           47 EGKDALSYANILRSRNKFVDALALYEIVLEK--DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-----ACAH  119 (689)
Q Consensus        47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~  119 (689)
                      .-..++.+|..|....-+.+|+..|+-+++.  .|+......++|.++++..+|.+|+++|+-++..-|.-     ...+
T Consensus       200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil  279 (840)
T KOG2003|consen  200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL  279 (840)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence            4556788999999999999999999887763  57777778889999999999999999999999887752     4567


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC----------C-
Q 005594          120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID----------P-  188 (689)
Q Consensus       120 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------~-  188 (689)
                      .++|..+.+.|+|+.|+..|+.+++..|+...+        +++..+++..|+-++-.+.|.+.+.+.          + 
T Consensus       280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~--------~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~  351 (840)
T KOG2003|consen  280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA--------LNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEK  351 (840)
T ss_pred             hhcCeeEEecccchhhHhhHHHHHHhCccHHhh--------hhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCc
Confidence            888888999999999999999999999986553        455666777788888888888887651          0 


Q ss_pred             CCH-HHHHHHHHH-----HHHcCCHHHHHHHHHHHHHh-----CCC--------------------CHHHHHHHHHHHHH
Q 005594          189 HYA-PAYYNLGVV-----YSELMQYDTALGCYEKAALE-----RPM--------------------YAEAYCNMGVIYKN  237 (689)
Q Consensus       189 ~~~-~~~~~la~~-----~~~~g~~~~A~~~~~~al~~-----~p~--------------------~~~~~~~la~~~~~  237 (689)
                      +++ ..+.+-+.-     .+...+-..|.+..-.+.++     .|+                    -.+.-.+.+--+.+
T Consensus       352 ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk  431 (840)
T KOG2003|consen  352 DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK  431 (840)
T ss_pred             CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence            010 111111100     01111112222222222111     111                    11223344455555


Q ss_pred             cCCHHHHHHHHH-------------------------------------HHHhcCCCcHHHHhhHHHHHHHhhhhhhhcC
Q 005594          238 RGDLESAIACYE-------------------------------------RCLAVSPNFEIAKNNMAIALTDLGTKVKLEG  280 (689)
Q Consensus       238 ~g~~~~A~~~~~-------------------------------------~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~  280 (689)
                      .|+++.|++.++                                     .++.++.-++       .++.+.|++.+..|
T Consensus       432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~-------~a~~nkgn~~f~ng  504 (840)
T KOG2003|consen  432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA-------AALTNKGNIAFANG  504 (840)
T ss_pred             ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH-------HHhhcCCceeeecC
Confidence            555555555544                                     3333333222       23445566777789


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA  360 (689)
Q Consensus       281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  360 (689)
                      ++++|.+.|++++..+....++++++|..+..+|+.++|+.+|-+.-.+--++.++++.++.+|..+.+..+|++++.++
T Consensus       505 d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~  584 (840)
T KOG2003|consen  505 DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA  584 (840)
T ss_pred             cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence            99999999999999888888999999999999999999999999988888888999999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHh
Q 005594          361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ  440 (689)
Q Consensus       361 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  440 (689)
                      ..+-|+++.++..||.+|-+.|+-.+|.+++-......|.+.+...+||..|....-+++|+.+|+++--+.|+.  ..+
T Consensus       585 ~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~--~kw  662 (840)
T KOG2003|consen  585 NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ--SKW  662 (840)
T ss_pred             cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH--HHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999974  456


Q ss_pred             hHHHHhhhccCCChHHHHHHHHHHHHHH
Q 005594          441 NRLLAMNYINEGHDDKLFEAHRDWGKRF  468 (689)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (689)
                      .++.+.++-+.|+...+++.+++..++|
T Consensus       663 qlmiasc~rrsgnyqka~d~yk~~hrkf  690 (840)
T KOG2003|consen  663 QLMIASCFRRSGNYQKAFDLYKDIHRKF  690 (840)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            7788888888999999888877665554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.94  E-value=1e-23  Score=219.83  Aligned_cols=303  Identities=16%  Similarity=0.124  Sum_probs=239.0

Q ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC----HHHHHH
Q 005594           46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----ACAHTH  121 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~  121 (689)
                      ......+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+..    ..++..
T Consensus        33 ~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~  112 (389)
T PRK11788         33 NRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE  112 (389)
T ss_pred             hhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            3456677789999999999999999999999999999999999999999999999999999998854332    356788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH-----HHHHH
Q 005594          122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYN  196 (689)
Q Consensus       122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~  196 (689)
                      +|.++...|++++|+..|+++++..|.+...       +..++.++...|++++|++.++++++..|.+.     ..+..
T Consensus       113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  185 (389)
T PRK11788        113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGA-------LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE  185 (389)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHcCCcchHHH-------HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            8999999999999999999999887765543       77888888889999999999998888776642     24567


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhh
Q 005594          197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV  276 (689)
Q Consensus       197 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~  276 (689)
                      +|.++...|++++|+..++++++..|+...++..+|.++...|++++|++.++++++..|.+.                 
T Consensus       186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----------------  248 (389)
T PRK11788        186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL-----------------  248 (389)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-----------------
Confidence            788888888888888888888888888888888888888888888888888888777655421                 


Q ss_pred             hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594          277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC  356 (689)
Q Consensus       277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  356 (689)
                                             ..++..++.++...|++++|+..++++++..|+... +..++.++.+.|++++|+..
T Consensus       249 -----------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~  304 (389)
T PRK11788        249 -----------------------SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQAL  304 (389)
T ss_pred             -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHH
Confidence                                   123455667777778888888888888887776644 37788888888888888888


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q 005594          357 YQMALSIKPNFSQSLNNLGVVYTV--QGKMDAAAEMIEKAIA  396 (689)
Q Consensus       357 ~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~  396 (689)
                      ++++++..|++......++..+..  .|+.++|+..+++.++
T Consensus       305 l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        305 LREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             HHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence            888888888776555444433322  4477777776665543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.94  E-value=1.1e-23  Score=199.92  Aligned_cols=385  Identities=17%  Similarity=0.183  Sum_probs=325.0

Q ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-----CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594           50 DALSYANILRSRNKFVDALALYEIVLEKDSG-----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI  124 (689)
Q Consensus        50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  124 (689)
                      -.+..|++++++.+|.+|+++|+-++..-|.     ...++.++|..+.+.|+|+.|+..|+.+++..|+... -+++..
T Consensus       239 lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a-~~nl~i  317 (840)
T KOG2003|consen  239 LKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA-ALNLII  317 (840)
T ss_pred             eeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh-hhhhhh
Confidence            3456788999999999999999999998775     2457888999999999999999999999999997554 456778


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcC----------CCCHHHHHHHHH------------------------------------
Q 005594          125 LYKDEGRLVEAAESYHKALSAD----------PSYKPAAECLAI------------------------------------  158 (689)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~----------p~~~~~~~~~a~------------------------------------  158 (689)
                      |++..|+-++-.+.|.+.+.+-          |.+......+..                                    
T Consensus       318 ~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~  397 (840)
T KOG2003|consen  318 CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD  397 (840)
T ss_pred             hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc
Confidence            8899999999999999998641          111000000000                                    


Q ss_pred             -----------------------HHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHc--CCHHHHHH
Q 005594          159 -----------------------VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSEL--MQYDTALG  212 (689)
Q Consensus       159 -----------------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~--g~~~~A~~  212 (689)
                                             +-.+.+..+.+.|+++.|++.+.-.-+.+... ..+-.+|..+++.+  .++.+|.+
T Consensus       398 fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq  477 (840)
T KOG2003|consen  398 FAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ  477 (840)
T ss_pred             hhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence                                   01123456778899999988876554444332 33455666666664  47888999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 005594          213 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA  292 (689)
Q Consensus       213 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  292 (689)
                      +...++.++.-++.++.+.|.+.+..|++++|.+.|++++..+....       .+++++|..+...|+.++|+++|-+.
T Consensus       478 yad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~-------ealfniglt~e~~~~ldeald~f~kl  550 (840)
T KOG2003|consen  478 YADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT-------EALFNIGLTAEALGNLDEALDCFLKL  550 (840)
T ss_pred             HHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH-------HHHHHhcccHHHhcCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998766544       45666777777788999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005594          293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN  372 (689)
Q Consensus       293 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  372 (689)
                      -.+--++.++++.++.+|..+.+..+|++.+.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+..-
T Consensus       551 h~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ie  630 (840)
T KOG2003|consen  551 HAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIE  630 (840)
T ss_pred             HHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHH
Confidence            88888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhH
Q 005594          373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR  442 (689)
Q Consensus       373 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  442 (689)
                      .||..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|++|.+.|+..-...|++.+...-+
T Consensus       631 wl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl  700 (840)
T KOG2003|consen  631 WLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL  700 (840)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998876543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.94  E-value=2.3e-23  Score=191.33  Aligned_cols=319  Identities=18%  Similarity=0.158  Sum_probs=256.1

Q ss_pred             CCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005594           78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA  157 (689)
Q Consensus        78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  157 (689)
                      +|.+++-++.+|..++..|++..|+..|..+++.+|++..+++..|.+|+.+|+-.-|+..+.+++++.|+...+     
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A-----  108 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA-----  108 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH-----
Confidence            556788899999999999999999999999999999999999999999999999999999999999999997665     


Q ss_pred             HHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005594          158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYY------------NLGVVYSELMQYDTALGCYEKAALERP  222 (689)
Q Consensus       158 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p  222 (689)
                        ....|.++.++|++++|..-|..+++.+|++.   +++.            .....++..|+...|+....+++++.|
T Consensus       109 --RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~  186 (504)
T KOG0624|consen  109 --RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP  186 (504)
T ss_pred             --HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence              66778888999999999999999999998642   2222            233445667899999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHH
Q 005594          223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA  302 (689)
Q Consensus       223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  302 (689)
                      .++..+...+.+|...|+...|+..++.+-++..++.+..+.++..++.+       |+.+.++...+++++++|++-..
T Consensus       187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v-------gd~~~sL~~iRECLKldpdHK~C  259 (504)
T KOG0624|consen  187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV-------GDAENSLKEIRECLKLDPDHKLC  259 (504)
T ss_pred             chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh-------hhHHHHHHHHHHHHccCcchhhH
Confidence            99999999999999999999999999999999999998888887777775       58999999999999999987643


Q ss_pred             HHH------------HHHHHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594          303 MYN------------LGVAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGVIYKDRDNLDKAVECYQMALSIKPN  366 (689)
Q Consensus       303 ~~~------------la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  366 (689)
                      +-.            -+......++|.++++..++.++.+|..+.    ....+..|+...+++.+|++.+.+++..+|+
T Consensus       260 f~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~  339 (504)
T KOG0624|consen  260 FPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD  339 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence            321            123334556666677777777776666432    2334556666667777777777777777777


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005594          367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV  410 (689)
Q Consensus       367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  410 (689)
                      +.+++...+.+|.....|+.|+..|+++.+.++++..+...+-.
T Consensus       340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~  383 (504)
T KOG0624|consen  340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLER  383 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            77777777777777777777777777777777766665554433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.94  E-value=3e-22  Score=218.45  Aligned_cols=374  Identities=13%  Similarity=0.008  Sum_probs=303.9

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 005594           52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR  131 (689)
Q Consensus        52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  131 (689)
                      ..++.++...|+.++|+..+++++...|.....+..+|.++...|++++|++.|+++++.+|+++.++..++..+...++
T Consensus        72 ~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q  151 (822)
T PRK14574         72 DDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR  151 (822)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC
Confidence            36778888889999999999999944444555555568899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005594          132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL  211 (689)
Q Consensus       132 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  211 (689)
                      .++|++.++++...+|.+...        ..++.++...++..+|++.++++++.+|++.+++..+..++...|-...|.
T Consensus       152 ~~eAl~~l~~l~~~dp~~~~~--------l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~  223 (822)
T PRK14574        152 GGVVLKQATELAERDPTVQNY--------MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL  223 (822)
T ss_pred             HHHHHHHHHHhcccCcchHHH--------HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence            999999999999999984432        223444444677777999999999999999998888877777666554444


Q ss_pred             HHH------------------------------------------------HHHHHh---CCCC----HHHHHHHHHHHH
Q 005594          212 GCY------------------------------------------------EKAALE---RPMY----AEAYCNMGVIYK  236 (689)
Q Consensus       212 ~~~------------------------------------------------~~al~~---~p~~----~~~~~~la~~~~  236 (689)
                      +..                                                ++.+..   .|..    ..+....-.++.
T Consensus       224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~  303 (822)
T PRK14574        224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL  303 (822)
T ss_pred             HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence            433                                                333332   2221    123334455677


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHH
Q 005594          237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW------HYADAMYNLGVAY  310 (689)
Q Consensus       237 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~  310 (689)
                      ..|++.++++.|+.+......-+.      .+....|..|...+++++|+.+|++++...+      ........|...+
T Consensus       304 ~r~r~~~vi~~y~~l~~~~~~~P~------y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~  377 (822)
T PRK14574        304 VRHQTADLIKEYEAMEAEGYKMPD------YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL  377 (822)
T ss_pred             HhhhHHHHHHHHHHhhhcCCCCCH------HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence            889999999999988754422111      1233455566668899999999999987653      2333357788899


Q ss_pred             HhcCCHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005594          311 GEMLKFDMAIVFYELAFHFNP---------------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG  375 (689)
Q Consensus       311 ~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  375 (689)
                      ...+++++|..++++..+..|               +..++...++.++...|++.+|++.+++.+...|.+..++..+|
T Consensus       378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A  457 (822)
T PRK14574        378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA  457 (822)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            999999999999999988543               33677888999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhH
Q 005594          376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG  439 (689)
Q Consensus       376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  439 (689)
                      .++...|.+.+|+..++.+..++|++..+...+|.++..+|++.+|....+++++..|+++...
T Consensus       458 ~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~  521 (822)
T PRK14574        458 SIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ  521 (822)
T ss_pred             HHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence            9999999999999999999999999999999999999999999999999999999999998654

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.93  E-value=3.4e-22  Score=202.86  Aligned_cols=391  Identities=15%  Similarity=0.130  Sum_probs=320.0

Q ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHH
Q 005594           46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--PQNACAHTHCG  123 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la  123 (689)
                      +++..+-.+...+...|+|+.+.+.|++++...-...+.|+.++.++...|.-..|+..+++.+...  |+++..+...+
T Consensus       321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas  400 (799)
T KOG4162|consen  321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS  400 (799)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence            3555566677788889999999999999998877788999999999999999999999999999988  77777666655


Q ss_pred             -HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHc-----------CChHHHHHHHHHHHhhCCCCH
Q 005594          124 -ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYA  191 (689)
Q Consensus       124 -~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~-----------~~~~~A~~~~~~al~~~~~~~  191 (689)
                       .|....+..++++.+..+++....  ...-...+..+..+|.+|..+           ....++++.++++++.+|.++
T Consensus       401 klc~e~l~~~eegldYA~kai~~~~--~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp  478 (799)
T KOG4162|consen  401 KLCIERLKLVEEGLDYAQKAISLLG--GQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP  478 (799)
T ss_pred             HHHHhchhhhhhHHHHHHHHHHHhh--hhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence             455668999999999999998542  222233444556666655432           235689999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH-
Q 005594          192 PAYYNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL-  269 (689)
Q Consensus       192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-  269 (689)
                      .+.+.++.-|..+++.+.|....+++++. ..+++.+|..++.++...+++.+|+...+.++...+++.........+- 
T Consensus       479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~  558 (799)
T KOG4162|consen  479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL  558 (799)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence            99999999999999999999999999999 5577999999999999999999999999999998887432211111110 


Q ss_pred             -----------------------------------HHhhhhhhhcCCHHHHHHHHHHHHhh--------C-----C----
Q 005594          270 -----------------------------------TDLGTKVKLEGDINQGVAYYKKALYY--------N-----W----  297 (689)
Q Consensus       270 -----------------------------------~~l~~~~~~~~~~~~A~~~~~~al~~--------~-----~----  297 (689)
                                                         ...+.......+..+|++.++++...        .     |    
T Consensus       559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~  638 (799)
T KOG4162|consen  559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV  638 (799)
T ss_pred             hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence                                               01111122233444444444444322        0     1    


Q ss_pred             ----CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005594          298 ----HY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS  368 (689)
Q Consensus       298 ----~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  368 (689)
                          ..     ...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|+.++|.+.|..++.++|++.
T Consensus       639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv  718 (799)
T KOG4162|consen  639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV  718 (799)
T ss_pred             cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence                11     135778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005594          369 QSLNNLGVVYTVQGKMDAAAE--MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA  438 (689)
Q Consensus       369 ~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  438 (689)
                      .+...+|.++.+.|+..-|.+  .+..+++++|.+.++|+.+|.++..+|+.++|.++|..++++.+.+|.-
T Consensus       719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~  790 (799)
T KOG4162|consen  719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL  790 (799)
T ss_pred             HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence            999999999999999888888  9999999999999999999999999999999999999999999988743

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.93  E-value=1.8e-21  Score=193.25  Aligned_cols=373  Identities=14%  Similarity=0.061  Sum_probs=248.0

Q ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005594           49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD  128 (689)
Q Consensus        49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  128 (689)
                      ..|+.-|+.+.+.+.++-|...|..+++..|.....|...+..-...|..++-..+|++++...|.....|...+..+..
T Consensus       517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~  596 (913)
T KOG0495|consen  517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK  596 (913)
T ss_pred             hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence            34666667777777777777777777777777666666666666666666766777777777777666667767777777


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 005594          129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD  208 (689)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  208 (689)
                      .|+...|...+.++++.+|++.+.       +...-.+.....+++.|..+|.++....|. ..+|+.-+.+...+++.+
T Consensus       597 agdv~~ar~il~~af~~~pnseei-------wlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~e  668 (913)
T KOG0495|consen  597 AGDVPAARVILDQAFEANPNSEEI-------WLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVE  668 (913)
T ss_pred             cCCcHHHHHHHHHHHHhCCCcHHH-------HHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHH
Confidence            777777777777777777766554       333334445556677777777776665444 456666666666677777


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHH
Q 005594          209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY  288 (689)
Q Consensus       209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  288 (689)
                      +|+++++++++..|+....|..+|+++.++++.+.|...|...++..|.....|..++       .+..+.|+...|...
T Consensus       669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa-------kleEk~~~~~rAR~i  741 (913)
T KOG0495|consen  669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA-------KLEEKDGQLVRARSI  741 (913)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH-------HHHHHhcchhhHHHH
Confidence            7777777777777777777777777777777777777777777777776665444333       333445566677777


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005594          289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS  368 (689)
Q Consensus       289 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  368 (689)
                      ++++.-.+|++...|.....+-.+.|+.+.|.....++++..|++...|..-..+.-.-++-..++.    |++....++
T Consensus       742 ldrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D----ALkkce~dp  817 (913)
T KOG0495|consen  742 LDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID----ALKKCEHDP  817 (913)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH----HHHhccCCc
Confidence            7777777777777777777777777777777777777777777766666655555544444444333    333445566


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHh
Q 005594          369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ  440 (689)
Q Consensus       369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  440 (689)
                      .++...|.++....++++|.++|.++++.+|++.++|..+-..+...|.-++-.+.+.++..-.|.+...|.
T Consensus       818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~  889 (913)
T KOG0495|consen  818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQ  889 (913)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHH
Confidence            667777777777777777777777777777777777777777777777777777777777777776655544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.1e-22  Score=196.27  Aligned_cols=352  Identities=18%  Similarity=0.231  Sum_probs=294.6

Q ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhC-----------------CHHHHHHHHHHH
Q 005594           46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN-----------------MGRLAFDSFSEA  108 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----------------~~~~A~~~~~~a  108 (689)
                      ..+...+..|.++....+.++|...|.+++..++...++...+-...+...                 ...+-++.+-++
T Consensus       139 ~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel  218 (611)
T KOG1173|consen  139 LESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYEL  218 (611)
T ss_pred             chhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHh
Confidence            455667888999999999999999999999999988776655543332211                 111111111111


Q ss_pred             HH----------cCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHc
Q 005594          109 VK----------LDP--------QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA  170 (689)
Q Consensus       109 l~----------~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~  170 (689)
                      ..          ..|        ++.......+..++..+++.+..+..+..++.+|-+....      -..+| ++...
T Consensus       219 ~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~------~~~ia-~l~el  291 (611)
T KOG1173|consen  219 KLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCL------PLHIA-CLYEL  291 (611)
T ss_pred             hhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchH------HHHHH-HHHHh
Confidence            10          112        3567788889999999999999999999999999887762      33444 67777


Q ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594          171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER  250 (689)
Q Consensus       171 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  250 (689)
                      |+..+-...-.+.++..|+.+..|+.+|..|...|++.+|.++|.++..++|....+|...|..+...|..++|+..|..
T Consensus       292 ~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~t  371 (611)
T KOG1173|consen  292 GKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFT  371 (611)
T ss_pred             cccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence            88888888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005594          251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN  330 (689)
Q Consensus       251 al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  330 (689)
                      |-++.|........+       |.-+...++++.|.++|.+++.+.|.++-.+..+|.+.+..+.|.+|..+|+.++..-
T Consensus       372 Aarl~~G~hlP~LYl-------gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i  444 (611)
T KOG1173|consen  372 AARLMPGCHLPSLYL-------GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI  444 (611)
T ss_pred             HHHhccCCcchHHHH-------HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence            999998865544433       4445557899999999999999999999999999999999999999999999999542


Q ss_pred             C-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 005594          331 P-------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE  403 (689)
Q Consensus       331 p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  403 (689)
                      +       .....+.++|.++.+++.+++|+.+|++++.+.|.++.++..+|.+|..+|+++.|++.|.+++.+.|++..
T Consensus       445 k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~  524 (611)
T KOG1173|consen  445 KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF  524 (611)
T ss_pred             hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence            1       234568999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             HHHHHHHH
Q 005594          404 AYNNLGVL  411 (689)
Q Consensus       404 ~~~~la~~  411 (689)
                      +-..|+.+
T Consensus       525 ~~~lL~~a  532 (611)
T KOG1173|consen  525 ISELLKLA  532 (611)
T ss_pred             HHHHHHHH
Confidence            66666543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.92  E-value=9.7e-21  Score=188.04  Aligned_cols=380  Identities=13%  Similarity=0.050  Sum_probs=315.6

Q ss_pred             hCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcC---------------------------
Q 005594           60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD---------------------------  112 (689)
Q Consensus        60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------------------  112 (689)
                      +..-|+.|...+.++-+.-|.+..+|..-+..-...|+.+.-.++..+.+..-                           
T Consensus       418 rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~T  497 (913)
T KOG0495|consen  418 RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVIT  497 (913)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhh
Confidence            34567778888888877788888888877777777777777666666655320                           


Q ss_pred             ---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHH
Q 005594          113 ---------------PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI  177 (689)
Q Consensus       113 ---------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~  177 (689)
                                     .+.-..|..-+..+.+.+-++-|+..|..+++.+|.....       +...+..-..-|..++-.
T Consensus       498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~sl-------Wlra~~~ek~hgt~Esl~  570 (913)
T KOG0495|consen  498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSL-------WLRAAMFEKSHGTRESLE  570 (913)
T ss_pred             HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHH-------HHHHHHHHHhcCcHHHHH
Confidence                           0112345555666777777888888888888888877665       444455555568888888


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594          178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN  257 (689)
Q Consensus       178 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  257 (689)
                      .++++++...|.....|...+..+...|+...|...+.++++.+|++-++|+....+.....+++.|..+|.++....|.
T Consensus       571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT  650 (913)
T KOG0495|consen  571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT  650 (913)
T ss_pred             HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence            89999999999988889999999999999999999999999999999999998888999999999999999999887776


Q ss_pred             cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 005594          258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC  337 (689)
Q Consensus       258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  337 (689)
                      .        .++..-......+++.++|+.+++++++..|.....|..+|.++.++++.+.|...|...++..|.....|
T Consensus       651 e--------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLW  722 (913)
T KOG0495|consen  651 E--------RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLW  722 (913)
T ss_pred             c--------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHH
Confidence            3        23444444445578999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------------
Q 005594          338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----------------  401 (689)
Q Consensus       338 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------------  401 (689)
                      ..++.+-.+.|+.-.|...++++.-.+|.+...|.....+-.+.|+.++|...+.+|++..|++                
T Consensus       723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r  802 (913)
T KOG0495|consen  723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR  802 (913)
T ss_pred             HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence            9999999999999999999999999999999999999999999999999999999999887653                


Q ss_pred             --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHH
Q 005594          402 --------------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK  456 (689)
Q Consensus       402 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~  456 (689)
                                    +.++...|..+....++++|.++|.++++.+|++.+++...  ...++..|..++
T Consensus       803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f--ykfel~hG~eed  869 (913)
T KOG0495|consen  803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF--YKFELRHGTEED  869 (913)
T ss_pred             chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH--HHHHHHhCCHHH
Confidence                          44667789999999999999999999999999999998763  333445565444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.92  E-value=3.8e-21  Score=198.71  Aligned_cols=337  Identities=15%  Similarity=0.131  Sum_probs=275.4

Q ss_pred             HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005594           82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT  161 (689)
Q Consensus        82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~  161 (689)
                      ...++..|..++..|++++|...+.++++++|.++.+|+.+|.+|.++|+.+++...+-.|-.++|++.+.       |.
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~-------W~  211 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL-------WK  211 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH-------HH
Confidence            45677788889999999999999999999999999999999999999999999999999999999999877       66


Q ss_pred             HhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH
Q 005594          162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYK  236 (689)
Q Consensus       162 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~  236 (689)
                      .++....++|++.+|.-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|..     -......+..+.
T Consensus       212 ~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~  291 (895)
T KOG2076|consen  212 RLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI  291 (895)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence            777777888999999999999999999999999999999999999999999999999999832     223345577788


Q ss_pred             HcCCHHHHHHHHHHHHhcCCC--cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh--CCC--------------
Q 005594          237 NRGDLESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY--NWH--------------  298 (689)
Q Consensus       237 ~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~--------------  298 (689)
                      ..++-+.|++.++.++....+  ..+...       .++.++.+...++.+..........  .++              
T Consensus       292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~n-------i~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~  364 (895)
T KOG2076|consen  292 THNERERAAKALEGALSKEKDEASLEDLN-------ILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP  364 (895)
T ss_pred             HhhHHHHHHHHHHHHHhhccccccccHHH-------HHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence            888889999999999883222  112222       2333444456777777666555431  000              


Q ss_pred             ------------CHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594          299 ------------YADA-MYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCAEACNNLGVIYKDRDNLDKAVECYQMALSIK  364 (689)
Q Consensus       299 ------------~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  364 (689)
                                  +..+ ...++.+..+.++..+++..+..--...+ +.++.+..++..+...|++.+|+.+|..+....
T Consensus       365 ~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~  444 (895)
T KOG2076|consen  365 NALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE  444 (895)
T ss_pred             cccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence                        1122 55556666666666666665544333323 458899999999999999999999999998876


Q ss_pred             CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594          365 PN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID  432 (689)
Q Consensus       365 p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  432 (689)
                      +. +..+|+.+|.||..+|.+++|+++|++++.+.|++.++...|+.++..+|+.++|.+.+++...-+
T Consensus       445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D  513 (895)
T KOG2076|consen  445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD  513 (895)
T ss_pred             cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence            54 467999999999999999999999999999999999999999999999999999999999887433

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=5.9e-21  Score=179.82  Aligned_cols=385  Identities=14%  Similarity=0.101  Sum_probs=318.2

Q ss_pred             ccccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcC---------
Q 005594           42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD---------  112 (689)
Q Consensus        42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------  112 (689)
                      .....+.+.....+.++...++-+.|+....++.... ..+.....++..+-.-++-.++.-.+...+...         
T Consensus        91 ~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~  169 (564)
T KOG1174|consen   91 YPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEA  169 (564)
T ss_pred             CCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHH
Confidence            3444678888999999999999999999877654322 234555556665555555445444444444332         


Q ss_pred             ----------------------CCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHH
Q 005594          113 ----------------------PQNACAH---THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL  167 (689)
Q Consensus       113 ----------------------p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~  167 (689)
                                            |..+..+   ...+.++....-+..+..++-.-....|++...       +..+|.++
T Consensus       170 ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhL-------l~~lak~~  242 (564)
T KOG1174|consen  170 LLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHL-------MMALGKCL  242 (564)
T ss_pred             HHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHH-------HHHHhhhh
Confidence                                  2222222   223444444445555555666666677777665       78889999


Q ss_pred             HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594          168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC  247 (689)
Q Consensus       168 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  247 (689)
                      +..|++.+|+..|+++.-++|......-..|.++...|++++-.......+........-|+--+...+..++++.|+.+
T Consensus       243 ~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~  322 (564)
T KOG1174|consen  243 YYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNF  322 (564)
T ss_pred             hhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998888888899999999999999999999


Q ss_pred             HHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005594          248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF  327 (689)
Q Consensus       248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  327 (689)
                      -+++++.+|.+..++...+.++..       .++.++|+-.|+.+..+.|-..+.|..+..+|...|++.+|...-+.++
T Consensus       323 ~eK~I~~~~r~~~alilKG~lL~~-------~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~  395 (564)
T KOG1174|consen  323 VEKCIDSEPRNHEALILKGRLLIA-------LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTI  395 (564)
T ss_pred             HHHHhccCcccchHHHhccHHHHh-------ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence            999999999998877666665555       5799999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 005594          328 HFNPHCAEACNNLG-VIYK-DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY  405 (689)
Q Consensus       328 ~~~p~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  405 (689)
                      +..|.++..+..+| .++. .-.--++|.++++++++++|....+-..++.++...|++++++..+++.+...|+ ...+
T Consensus       396 ~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH  474 (564)
T KOG1174|consen  396 RLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLH  474 (564)
T ss_pred             HHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHH
Confidence            99999999999997 4443 3345689999999999999999999999999999999999999999999999887 5788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhH
Q 005594          406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR  442 (689)
Q Consensus       406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  442 (689)
                      ..||.++...+.+++|.++|..|+.++|++..+...+
T Consensus       475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl  511 (564)
T KOG1174|consen  475 NHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL  511 (564)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence            9999999999999999999999999999998776654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.5e-21  Score=190.93  Aligned_cols=361  Identities=19%  Similarity=0.186  Sum_probs=295.4

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 005594           51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG  130 (689)
Q Consensus        51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  130 (689)
                      +-+....+...|+|++|++--.+.++++|+.+..|..+|..++-+|+|++|+..|.+.|+.+|+|...+..++.++....
T Consensus        39 ySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~  118 (539)
T KOG0548|consen   39 YSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY  118 (539)
T ss_pred             hcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH
Confidence            44566778899999999999999999999999999999999999999999999999999999999998888887763220


Q ss_pred             ---------------------CHHHHHHHHHHHH---hcCCCCHHH----------------------------------
Q 005594          131 ---------------------RLVEAAESYHKAL---SADPSYKPA----------------------------------  152 (689)
Q Consensus       131 ---------------------~~~~A~~~~~~al---~~~p~~~~~----------------------------------  152 (689)
                                           ++-.....|.+.+   ..+|.+...                                  
T Consensus       119 ~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~  198 (539)
T KOG0548|consen  119 AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMA  198 (539)
T ss_pred             HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCC
Confidence                                 0001111122222   112211000                                  


Q ss_pred             ---------------------HHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005594          153 ---------------------AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL  211 (689)
Q Consensus       153 ---------------------~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  211 (689)
                                           ....+.-...+|...+...++..|++.|..++.++ .+...+.+.+-+|+..|.+.+.+
T Consensus       199 ~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~  277 (539)
T KOG0548|consen  199 EPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECI  277 (539)
T ss_pred             CcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhh
Confidence                                 11123345668999999999999999999999999 88899999999999999999999


Q ss_pred             HHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHH
Q 005594          212 GCYEKAALERPMY-------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ  284 (689)
Q Consensus       212 ~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  284 (689)
                      ....++++.....       ..+...+|..+...++++.|+.+|++++.....               .++.......++
T Consensus       278 ~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk~~Ek  342 (539)
T KOG0548|consen  278 ELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLKEAEK  342 (539)
T ss_pred             cchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHHHHHH
Confidence            9999988765432       234445677888889999999999998865544               122223456788


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594          285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK  364 (689)
Q Consensus       285 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  364 (689)
                      ++...+...-.+|.-.......|..++..|+|..|+..|.+++..+|+++..|.+.|.+|.++|++..|+...+++++++
T Consensus       343 ~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~  422 (539)
T KOG0548|consen  343 ALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD  422 (539)
T ss_pred             HHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            88888888888888888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594          365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ  427 (689)
Q Consensus       365 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  427 (689)
                      |+....|...|.++..+.+|++|++.|+++++.+|++.++.-.+.++...+.......+.+++
T Consensus       423 p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r  485 (539)
T KOG0548|consen  423 PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR  485 (539)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence            999999999999999999999999999999999999999999999998876444445555555

>TIGR00540 hemY_coli hemY protein

Probab=99.89  E-value=8.1e-20  Score=189.41  Aligned_cols=301  Identities=12%  Similarity=0.003  Sum_probs=233.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHHHHHH
Q 005594          120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-PAYYNLG  198 (689)
Q Consensus       120 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la  198 (689)
                      ...|.+....|+++.|.+.+.++.+..|+....       +...|......|++++|..++.++.+..|+.. .+....+
T Consensus        88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~-------~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a  160 (409)
T TIGR00540        88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLN-------LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART  160 (409)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence            455667777888888888888887777765443       44556777777888888888888887777764 4555668


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 005594          199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL  278 (689)
Q Consensus       199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~  278 (689)
                      .++...|++++|...+++..+..|+++.++..++.++...|++++|.+.+.+..+....++.....+.. ....+  ...
T Consensus       161 ~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~-~a~~~--~l~  237 (409)
T TIGR00540       161 RILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ-KAEIG--LLD  237 (409)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHH--HHH
Confidence            888888888888888888888888888888888888888888888888888888764443322211110 11111  111


Q ss_pred             cCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHcCCHHH
Q 005594          279 EGDINQGVAYYKKALYYNW----HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC--NNLGVIYKDRDNLDK  352 (689)
Q Consensus       279 ~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~~  352 (689)
                      .+..+++.+.+.++.+..|    +++..+..++..+...|++++|.+.++++++..|++....  ..........++.++
T Consensus       238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~  317 (409)
T TIGR00540       238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK  317 (409)
T ss_pred             HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence            2333445556677777666    5899999999999999999999999999999999987532  233333445688999


Q ss_pred             HHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          353 AVECYQMALSIKPNFS--QSLNNLGVVYTVQGKMDAAAEMIE--KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC  428 (689)
Q Consensus       353 A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  428 (689)
                      +++.++++++..|+++  ..+..+|+++.+.|++++|.++|+  ++++..|+... +..+|.++.++|+.++|.++|+++
T Consensus       318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999  889999999999999999999999  67888898655 559999999999999999999998


Q ss_pred             Hhc
Q 005594          429 LKI  431 (689)
Q Consensus       429 l~~  431 (689)
                      +..
T Consensus       397 l~~  399 (409)
T TIGR00540       397 LGL  399 (409)
T ss_pred             HHH
Confidence            764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=99.89  E-value=1.3e-19  Score=187.99  Aligned_cols=302  Identities=12%  Similarity=0.009  Sum_probs=189.2

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHH
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGILY  126 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~  126 (689)
                      +...+..|...+..|+++.|.+.+.++.+..|+....+...|.++..+|++++|.+++.++.+..|++. .+....+.++
T Consensus        84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~  163 (409)
T TIGR00540        84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL  163 (409)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence            445566777777777777777777777777776666777777777777777777777777777777664 4555567777


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH----HHHHHHH
Q 005594          127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY----NLGVVYS  202 (689)
Q Consensus       127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----~la~~~~  202 (689)
                      ...|++++|...++++++..|+++.+       +..++.++...|++++|++.+.+..+....++....    ....-+.
T Consensus       164 l~~~~~~~Al~~l~~l~~~~P~~~~~-------l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l  236 (409)
T TIGR00540       164 LAQNELHAARHGVDKLLEMAPRHKEV-------LKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL  236 (409)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777665       555666666777777777777777766443333221    1112223


Q ss_pred             HcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 005594          203 ELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL  278 (689)
Q Consensus       203 ~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~  278 (689)
                      ..+..+++.+.+.++.+..|    +++..+..++..+...|++++|.+.++++++..|++......              
T Consensus       237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~--------------  302 (409)
T TIGR00540       237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP--------------  302 (409)
T ss_pred             HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH--------------
Confidence            33344444556666666655    467777777777777777777777777777777765421100              


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Q 005594          279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA--EACNNLGVIYKDRDNLDKAVEC  356 (689)
Q Consensus       279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~  356 (689)
                                               ..........++.+.+++.++++++.+|+++  ..+..+|.++.+.|++++|.++
T Consensus       303 -------------------------~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~  357 (409)
T TIGR00540       303 -------------------------LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADA  357 (409)
T ss_pred             -------------------------HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHH
Confidence                                     1111111222344555666666666666666  5556666666666666666666


Q ss_pred             HH--HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005594          357 YQ--MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA  396 (689)
Q Consensus       357 ~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  396 (689)
                      |+  ++++..|+... +..+|.++.+.|+.++|.+++++++.
T Consensus       358 le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       358 FKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            66  35555554433 33666666666666666666666554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.89  E-value=7.4e-18  Score=189.45  Aligned_cols=367  Identities=14%  Similarity=0.070  Sum_probs=260.1

Q ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594           47 EGKDALSYANILRSRNKFVDALALYEIVLEKDS--GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI  124 (689)
Q Consensus        47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  124 (689)
                      +...++..-..+.+.|++++|+++|+++.+.+.  .+...+..+...+...|..++|...++....  | +...+..+-.
T Consensus       369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~  445 (1060)
T PLN03218        369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMS  445 (1060)
T ss_pred             CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHH
Confidence            455677777788899999999999999887653  2333444455566777888888887776543  3 4566777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Q 005594          125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSE  203 (689)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~  203 (689)
                      .+.+.|++++|...++++.+.......      .++..+...+.+.|+.++|.+.|+++.+.... +...|..+...|.+
T Consensus       446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~------~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k  519 (1060)
T PLN03218        446 VCASSQDIDGALRVLRLVQEAGLKADC------KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR  519 (1060)
T ss_pred             HHHhCcCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            778888888888888887775433211      12556666777778888888888887765432 57777888888888


Q ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCcHHHHhhHHHHHHHhhhhhhh
Q 005594          204 LMQYDTALGCYEKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAV----SPNFEIAKNNMAIALTDLGTKVKL  278 (689)
Q Consensus       204 ~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~l~~~~~~  278 (689)
                      .|++++|++.|+++.+.. ..+...|..+...+.+.|++++|.+.++++...    .|+. .       ++..+...+.+
T Consensus       520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-v-------TynaLI~ay~k  591 (1060)
T PLN03218        520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-I-------TVGALMKACAN  591 (1060)
T ss_pred             CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-H-------HHHHHHHHHHH
Confidence            888888888888776543 123667778888888888888888888877652    3432 1       23333444555


Q ss_pred             cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594          279 EGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVEC  356 (689)
Q Consensus       279 ~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~  356 (689)
                      .|++++|.++|+++.+.. +.+...|..+...|.+.|++++|+.+|+++.+.. ..+...|..+...+.+.|++++|.++
T Consensus       592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l  671 (1060)
T PLN03218        592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI  671 (1060)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            678888888888877765 3456677777888888888888888888777652 22356777777778888888888888


Q ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          357 YQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI  431 (689)
Q Consensus       357 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  431 (689)
                      ++++.+.. +.+..++..+...|.+.|++++|.+.|++..+.  .| +...|..+...|.+.|++++|.+.|++..+.
T Consensus       672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~  748 (1060)
T PLN03218        672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRL  748 (1060)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            88777653 334667777788888888888888888777653  34 3566777778888888888888888876543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.88  E-value=2.3e-20  Score=193.70  Aligned_cols=229  Identities=21%  Similarity=0.219  Sum_probs=203.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594           61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH  140 (689)
Q Consensus        61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  140 (689)
                      +++...|+..|-+++++++.-+.++..+|..|....+...|.++|.++.++++.+..+....+..|....+++.|....-
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999866


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005594          141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE  220 (689)
Q Consensus       141 ~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  220 (689)
                      .+-+..|.....     ..+...|..+...++...|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..+
T Consensus       551 ~~~qka~a~~~k-----~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L  625 (1238)
T KOG1127|consen  551 RAAQKAPAFACK-----ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL  625 (1238)
T ss_pred             HHhhhchHHHHH-----hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence            665555543222     225568899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh
Q 005594          221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY  294 (689)
Q Consensus       221 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  294 (689)
                      +|.+....+..+.+....|+|.+|+..+...+............++.++.+.+..+...|-..+|..++++.++
T Consensus       626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie  699 (1238)
T KOG1127|consen  626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE  699 (1238)
T ss_pred             CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            99999999999999999999999999999999888777778888888888888777777776666666666554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.88  E-value=1.4e-22  Score=199.85  Aligned_cols=262  Identities=21%  Similarity=0.197  Sum_probs=122.6

Q ss_pred             HHhHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005594          161 TDLGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR  238 (689)
Q Consensus       161 ~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  238 (689)
                      ..++.++...|++++|++.+.+.+..  .|++...|..+|.+....+++++|+..|++++..++.++..+..++.+ ...
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            35688888999999999999766544  488899999999999999999999999999999999988888888888 799


Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHhcCCH
Q 005594          239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGVAYGEMLKF  316 (689)
Q Consensus       239 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~  316 (689)
                      +++++|+.+++++.+..++ +..+.       ....++...++++++...++++....  +.++..+..+|.++.+.|+.
T Consensus        91 ~~~~~A~~~~~~~~~~~~~-~~~l~-------~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~  162 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERDGD-PRYLL-------SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP  162 (280)
T ss_dssp             -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred             ccccccccccccccccccc-cchhh-------HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence            9999999999998876644 22222       23334455789999999999977654  67888999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005594          317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA  396 (689)
Q Consensus       317 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  396 (689)
                      ++|+..|+++++.+|++..+...++.++...|+++++.+.++...+..|+++..+..+|.++..+|++++|+.+++++++
T Consensus       163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~  242 (280)
T PF13429_consen  163 DKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK  242 (280)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999888899999999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          397 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI  431 (689)
Q Consensus       397 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  431 (689)
                      .+|+++.++..+|.++...|+.++|..+++++++.
T Consensus       243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HSTT-HHHHHHHHHHHT------------------
T ss_pred             ccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999998764

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.88  E-value=1.7e-18  Score=172.83  Aligned_cols=376  Identities=20%  Similarity=0.241  Sum_probs=269.1

Q ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005594           47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY  126 (689)
Q Consensus        47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  126 (689)
                      ....++..+...+..++|.+.++..+++++..|++++.+...|..+..+|+.++|......+++.++.+...|..+|.++
T Consensus         6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~   85 (700)
T KOG1156|consen    6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ   85 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005594          127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ  206 (689)
Q Consensus       127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  206 (689)
                      ....+|++|+++|+.|+.+.|+|...       +..++....+.++++.....-.+.++..|..-..|...+..+...|+
T Consensus        86 R~dK~Y~eaiKcy~nAl~~~~dN~qi-------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~  158 (700)
T KOG1156|consen   86 RSDKKYDEAIKCYRNALKIEKDNLQI-------LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE  158 (700)
T ss_pred             hhhhhHHHHHHHHHHHHhcCCCcHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999876       77777777888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 005594          207 YDTALGCYEKAALER---PM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL  278 (689)
Q Consensus       207 ~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~  278 (689)
                      +..|...++...+..   |.     ..........+....|..++|++.+..--...-+      . -......+.++..
T Consensus       159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D------k-la~~e~ka~l~~k  231 (700)
T KOG1156|consen  159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD------K-LAFEETKADLLMK  231 (700)
T ss_pred             HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH------H-HHHhhhHHHHHHH
Confidence            999999888876654   32     2345555667777788888877766553221111      1 1123334566666


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhhCCCC------------------------
Q 005594          279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI-VFYELAFHFNPHC------------------------  333 (689)
Q Consensus       279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~------------------------  333 (689)
                      .+++++|...|...+..+|++...+..+-.++..-.+--+++ ..|...-+..|..                        
T Consensus       232 l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL  311 (700)
T KOG1156|consen  232 LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYL  311 (700)
T ss_pred             HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHH
Confidence            789999999999999999998887777666665333333333 3444333322211                        


Q ss_pred             --------HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC------------CCC--HHHHHHHHHHHHHcCCHHHHH
Q 005594          334 --------AEACNNLGVIYKDRDN---LDKAVECYQMALSIK------------PNF--SQSLNNLGVVYTVQGKMDAAA  388 (689)
Q Consensus       334 --------~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~------------p~~--~~~~~~la~~~~~~g~~~~A~  388 (689)
                              +.+...+-.+|..-..   .++-+..|...+.-.            |..  ...++.++.-+...|+++.|.
T Consensus       312 ~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~  391 (700)
T KOG1156|consen  312 RPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVAL  391 (700)
T ss_pred             HHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHH
Confidence                    0000011111100000   001111111111110            111  123455666666777777777


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005594          389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR  436 (689)
Q Consensus       389 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  436 (689)
                      .+++.|+...|...+.+...|+++...|+.++|..++.++.++|-.|.
T Consensus       392 ~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR  439 (700)
T KOG1156|consen  392 EYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR  439 (700)
T ss_pred             HHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence            777777777777777777777777777777777777777777765543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.88  E-value=6.9e-20  Score=167.52  Aligned_cols=382  Identities=18%  Similarity=0.145  Sum_probs=292.7

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhC--------CHHHHHHHHHH-HHHcC--CCC----
Q 005594           51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN--------MGRLAFDSFSE-AVKLD--PQN----  115 (689)
Q Consensus        51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~-al~~~--p~~----  115 (689)
                      -+-+|..+++...|+...+++...++..|++..+|.....++...-        +-.+|...++. .+...  |..    
T Consensus         7 ~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k~   86 (478)
T KOG1129|consen    7 DYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIKT   86 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCcccC
Confidence            3557889999999999999999999999999999999888875542        22345554432 12111  100    


Q ss_pred             ---------HH-----------HHHHHHHH-HHHcCCHHHHHHHH--------------------------------HHH
Q 005594          116 ---------AC-----------AHTHCGIL-YKDEGRLVEAAESY--------------------------------HKA  142 (689)
Q Consensus       116 ---------~~-----------~~~~la~~-~~~~g~~~~A~~~~--------------------------------~~a  142 (689)
                               ..           +-...... -.+-|..+.|+..-                                -.+
T Consensus        87 p~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG~f~nl  166 (478)
T KOG1129|consen   87 PFTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDGKFYNL  166 (478)
T ss_pred             CCCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCcceeeh
Confidence                     00           00000000 01112222222111                                111


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC---CC-------CHHHHHHHHHHHHHcCCHHHHHH
Q 005594          143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PH-------YAPAYYNLGVVYSELMQYDTALG  212 (689)
Q Consensus       143 l~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~-------~~~~~~~la~~~~~~g~~~~A~~  212 (689)
                      -.++|........+...++.  .+++..++...|-......++.+   |.       +......+|.||+.+|.+.+|.+
T Consensus       167 sRLN~tkYa~~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aek  244 (478)
T KOG1129|consen  167 SRLNPTKYAERPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEK  244 (478)
T ss_pred             hhcCchhhccChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHH
Confidence            22233222222222333332  23455677777776666555442   11       22334579999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 005594          213 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA  292 (689)
Q Consensus       213 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  292 (689)
                      .++.+++..|. ++.+..++.+|.+..+...|+..+.+.++..|.+.......       ++++...++.++|.++|+.+
T Consensus       245 qlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~-------ARi~eam~~~~~a~~lYk~v  316 (478)
T KOG1129|consen  245 QLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQ-------ARIHEAMEQQEDALQLYKLV  316 (478)
T ss_pred             HHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhh-------HHHHHHHHhHHHHHHHHHHH
Confidence            99999998775 88999999999999999999999999999999987655444       44555567999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHH
Q 005594          293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQ  369 (689)
Q Consensus       293 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~  369 (689)
                      ++.+|.+.++...+|.-|+..++.+-|+.+|++.+++.-.+++.+.++|.+++..++++-++..|++++....+   ..+
T Consensus       317 lk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaD  396 (478)
T KOG1129|consen  317 LKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAAD  396 (478)
T ss_pred             HhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987432   367


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhH
Q 005594          370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR  442 (689)
Q Consensus       370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  442 (689)
                      +|+++|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..+-.+.|+-.+...|+
T Consensus       397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl  469 (478)
T KOG1129|consen  397 VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL  469 (478)
T ss_pred             hhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence            9999999999999999999999999999999999999999999999999999999999999999988877764

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.88  E-value=5.8e-19  Score=181.95  Aligned_cols=303  Identities=11%  Similarity=0.002  Sum_probs=233.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHH-HHHHH
Q 005594          119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP-AYYNL  197 (689)
Q Consensus       119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~l  197 (689)
                      .+..|......|++++|.+...+.-+..+. +..      .+...+......|+++.|..++.++.+.+|+... .....
T Consensus        87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l------~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~  159 (398)
T PRK10747         87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVV------NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR  159 (398)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHH------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            345566667788888888777765544222 221      1333455557888888888888888888887643 33345


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhh-HHHHHHHhhhhh
Q 005594          198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN-MAIALTDLGTKV  276 (689)
Q Consensus       198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~l~~~~  276 (689)
                      +.++...|++++|+..++++.+..|+++.++..++.+|...|++++|++.+.+..+....++..... ...++..+....
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~  239 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA  239 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            8888889999999999999999999999998899999999999999998888888776654433221 112222222222


Q ss_pred             hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594          277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC  356 (689)
Q Consensus       277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  356 (689)
                      ....+.+...+.++......|+++.+...++..+...|+.++|...++++++. +.++......+.+  ..++.+++++.
T Consensus       240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~  316 (398)
T PRK10747        240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKV  316 (398)
T ss_pred             HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHH
Confidence            22344555566666665667889999999999999999999999999999994 4456555555544  44999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594          357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID  432 (689)
Q Consensus       357 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  432 (689)
                      +++.++.+|+++..+..+|.++...|++++|.++|+++++..|++. .+..++.++.++|+.++|.++|++++.+.
T Consensus       317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999954 46689999999999999999999998864

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.88  E-value=4.8e-19  Score=180.22  Aligned_cols=349  Identities=16%  Similarity=0.091  Sum_probs=291.8

Q ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHH-HHHhCCHHHHHHHHHHHHHcCC-----CCHHH
Q 005594           47 EGKDALSYANILRSRNKFVDALALYEIVLEKD--SGNVEAHIGKGIC-LQMQNMGRLAFDSFSEAVKLDP-----QNACA  118 (689)
Q Consensus        47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p-----~~~~~  118 (689)
                      ..+.|..++-.+...|.-..|+.++++.+...  |.++..+...+.. ....+.+++++.+..+++....     -.+..
T Consensus       356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~  435 (799)
T KOG4162|consen  356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG  435 (799)
T ss_pred             hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence            45778999999999999999999999999988  7777666655554 5567999999999999998431     23567


Q ss_pred             HHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh-
Q 005594          119 HTHCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-  186 (689)
Q Consensus       119 ~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~-  186 (689)
                      +..+|.+|..+-           ...+++..++++++.+|.|+.+       .+.++.-|..+++.+.|+....+++++ 
T Consensus       436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~-------if~lalq~A~~R~l~sAl~~~~eaL~l~  508 (799)
T KOG4162|consen  436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV-------IFYLALQYAEQRQLTSALDYAREALALN  508 (799)
T ss_pred             HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH-------HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            778887776432           3578899999999999999876       777888888899999999999999999 


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------
Q 005594          187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS-----------  255 (689)
Q Consensus       187 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------  255 (689)
                      ..+++.+|..++.++...+++.+|+...+.+++..++|.........+-...++.++|+..+...+...           
T Consensus       509 ~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~  588 (799)
T KOG4162|consen  509 RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD  588 (799)
T ss_pred             CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence            556799999999999999999999999999999888866555555555555566666555544433221           


Q ss_pred             ---------------------------------------------------CCcHHHHhhHHHHHHHhhhhhhhcCCHHH
Q 005594          256 ---------------------------------------------------PNFEIAKNNMAIALTDLGTKVKLEGDINQ  284 (689)
Q Consensus       256 ---------------------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  284 (689)
                                                                         |.....+...-..+...+..+...++.++
T Consensus       589 ~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~  668 (799)
T KOG4162|consen  589 EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDE  668 (799)
T ss_pred             hhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchH
Confidence                                                               11112233334445566777778889999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHh
Q 005594          285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALS  362 (689)
Q Consensus       285 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~  362 (689)
                      |..++.++-.++|.....++..|..+...|+..+|.+.|..++.++|+++.....+|.++.+.|+..-|..  .+..+++
T Consensus       669 a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr  748 (799)
T KOG4162|consen  669 ARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR  748 (799)
T ss_pred             HHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999888888  9999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 005594          363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA  402 (689)
Q Consensus       363 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  402 (689)
                      ++|.++++|+.+|.++.++|+.++|.++|+.++++.+.+|
T Consensus       749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            9999999999999999999999999999999999987664

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=6.1e-19  Score=166.39  Aligned_cols=311  Identities=14%  Similarity=0.108  Sum_probs=270.7

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHH
Q 005594           88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL  167 (689)
Q Consensus        88 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~  167 (689)
                      ++.++.....+..+..++-.-...-|+|...+..+|.+++..|++++|+..|+++..++|.+...       .-..|..+
T Consensus       204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~-------MD~Ya~LL  276 (564)
T KOG1174|consen  204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA-------MDLYAVLL  276 (564)
T ss_pred             HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh-------HHHHHHHH
Confidence            44444444455556666666677789999999999999999999999999999999999998776       45566777


Q ss_pred             HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594          168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC  247 (689)
Q Consensus       168 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  247 (689)
                      ...|++++-.......+..+.....-|+--+...+..+++..|+.+-++++..+|.+..++...|.++...++.++|+-.
T Consensus       277 ~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~Ia  356 (564)
T KOG1174|consen  277 GQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIA  356 (564)
T ss_pred             HhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHH
Confidence            78899999999988999888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHH
Q 005594          248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG-VAYG-EMLKFDMAIVFYEL  325 (689)
Q Consensus       248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~  325 (689)
                      |+.+..+.|.....+..+.       ..|...|.+.+|....+.++...|.++.++..+| .++. .-.--++|.+++++
T Consensus       357 FR~Aq~Lap~rL~~Y~GL~-------hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek  429 (564)
T KOG1174|consen  357 FRTAQMLAPYRLEIYRGLF-------HSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEK  429 (564)
T ss_pred             HHHHHhcchhhHHHHHHHH-------HHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence            9999999998766555444       4445578999999999999999999999999886 4443 34456899999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 005594          326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY  405 (689)
Q Consensus       326 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  405 (689)
                      ++++.|....+-..++.++...|.++.++..+++.+...|+ ...+..||.++...+.+.+|+++|..++.++|++..+.
T Consensus       430 ~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl  508 (564)
T KOG1174|consen  430 SLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL  508 (564)
T ss_pred             hhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence            99999999999999999999999999999999999998876 46788999999999999999999999999999988777


Q ss_pred             HHHHHHHH
Q 005594          406 NNLGVLYR  413 (689)
Q Consensus       406 ~~la~~~~  413 (689)
                      ..+-..-.
T Consensus       509 ~Gl~~lEK  516 (564)
T KOG1174|consen  509 RGLRLLEK  516 (564)
T ss_pred             HHHHHHHh
Confidence            66655433

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.87  E-value=3.9e-19  Score=198.14  Aligned_cols=398  Identities=14%  Similarity=0.022  Sum_probs=314.4

Q ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594           46 FEGKDALSYANILRSRNKFVDALALYEIVLEKD-SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI  124 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  124 (689)
                      .+...+..+...+...++++.|.+++..+.+.. ..+...+..+...|.+.|++++|.+.|++..+   .+...|..+..
T Consensus       121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~  197 (697)
T PLN03081        121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIG  197 (697)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHH
Confidence            456677788888889999999999998887742 22567888888999999999999999988753   35667888889


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHH-----------------------------HHHHHHHHHHHhHHHHHHcCChHH
Q 005594          125 LYKDEGRLVEAAESYHKALSADPSYKP-----------------------------AAECLAIVLTDLGTSLKLAGNTQD  175 (689)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------------------~~~~~a~~~~~l~~~~~~~~~~~~  175 (689)
                      .|.+.|++++|+..|+++.+.......                             ....-..++..+...|.+.|++++
T Consensus       198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~  277 (697)
T PLN03081        198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED  277 (697)
T ss_pred             HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence            999999999999999988764321100                             000012236667888899999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAV  254 (689)
Q Consensus       176 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  254 (689)
                      |.+.|++.   .+.+..+|..+...|.+.|++++|++.|++..+.. .-+...+..+...+.+.|++++|.+.+..+++.
T Consensus       278 A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~  354 (697)
T PLN03081        278 ARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT  354 (697)
T ss_pred             HHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence            99999876   34578899999999999999999999999987653 235678999999999999999999999999887


Q ss_pred             CC-CcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CC
Q 005594          255 SP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PH  332 (689)
Q Consensus       255 ~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~  332 (689)
                      .. .+.       .++..+...|.+.|++++|.+.|++..+   .+...|..+...|.+.|+.++|++.|+++.+.. ..
T Consensus       355 g~~~d~-------~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P  424 (697)
T PLN03081        355 GFPLDI-------VANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP  424 (697)
T ss_pred             CCCCCe-------eehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            52 222       2344555666778899999999998754   356789999999999999999999999988753 33


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005594          333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV  410 (689)
Q Consensus       333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  410 (689)
                      +...+..+...+.+.|+.++|.++|+...+..+  .+...+..+..+|.+.|++++|.+.+++. ...| +..+|..+..
T Consensus       425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~  502 (697)
T PLN03081        425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLT  502 (697)
T ss_pred             CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHH
Confidence            577788888999999999999999999886432  23457888999999999999999998764 2334 3677999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHHHHHH
Q 005594          411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD  463 (689)
Q Consensus       411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (689)
                      .+...|+.+.|...+++.+++.|++...+.  .+.-.|...|..+++.+..+.
T Consensus       503 a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~--~L~~~y~~~G~~~~A~~v~~~  553 (697)
T PLN03081        503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYV--VLLNLYNSSGRQAEAAKVVET  553 (697)
T ss_pred             HHHHcCCcHHHHHHHHHHhCCCCCCCcchH--HHHHHHHhCCCHHHHHHHHHH
Confidence            999999999999999999999999776554  344566677777666555443

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.87  E-value=3.5e-17  Score=184.09  Aligned_cols=360  Identities=13%  Similarity=0.045  Sum_probs=299.2

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHH
Q 005594           55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP-QNACAHTHCGILYKDEGRLV  133 (689)
Q Consensus        55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~  133 (689)
                      ...+...|..++|..+++....  | +...+..+-.++...|++++|.+.|+++.+... .+...+..+...|.+.|+.+
T Consensus       413 i~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd  489 (1060)
T PLN03218        413 FKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD  489 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHH
Confidence            3446678899999999987654  4 567888888899999999999999999988654 36778899999999999999


Q ss_pred             HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHH
Q 005594          134 EAAESYHKALSADPS-YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTAL  211 (689)
Q Consensus       134 ~A~~~~~~al~~~p~-~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~  211 (689)
                      +|.+.|+++.+.... +..       .+..+...|.+.|++++|++.|.++.+..- -+...|..+...+.+.|++++|.
T Consensus       490 ~A~~vf~eM~~~Gv~Pdvv-------TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~  562 (1060)
T PLN03218        490 AMFEVFHEMVNAGVEANVH-------TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF  562 (1060)
T ss_pred             HHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            999999999876432 233       367778888999999999999999876532 24788999999999999999999


Q ss_pred             HHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHhhHHHHHHHhhhhhhhcCCHHHHH
Q 005594          212 GCYEKAALE----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGV  286 (689)
Q Consensus       212 ~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  286 (689)
                      +.++++...    .| +...+..+...|.+.|++++|.+.|+++.+... .+..       .|..+...+.+.|++++|+
T Consensus       563 ~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~-------tynsLI~ay~k~G~~deAl  634 (1060)
T PLN03218        563 DVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE-------VYTIAVNSCSQKGDWDFAL  634 (1060)
T ss_pred             HHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH-------HHHHHHHHHHhcCCHHHHH
Confidence            999999763    34 467888999999999999999999999988753 2333       3444455556678999999


Q ss_pred             HHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594          287 AYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK  364 (689)
Q Consensus       287 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  364 (689)
                      .+|+++.+.. ..+...+..+...+.+.|++++|.++++++.+.. +.+...+..+...|.+.|++++|++.|++..+..
T Consensus       635 ~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g  714 (1060)
T PLN03218        635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK  714 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence            9999998763 2246788899999999999999999999999874 4568899999999999999999999999987542


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594          365 -PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP  433 (689)
Q Consensus       365 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  433 (689)
                       ..+...|..+...|.+.|++++|++.|+++...  .|+ ...+..+...+.+.|++++|.+.+.++++...
T Consensus       715 ~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi  785 (1060)
T PLN03218        715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGI  785 (1060)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence             235678999999999999999999999998765  454 66778888999999999999999999987643

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.87  E-value=1.1e-21  Score=193.59  Aligned_cols=263  Identities=20%  Similarity=0.182  Sum_probs=82.1

Q ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594           50 DALSYANILRSRNKFVDALALYEIVLEK--DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK  127 (689)
Q Consensus        50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  127 (689)
                      ..+.+|..++..|++++|++.+++.+..  .|+++..|..+|.+....+++++|+..|++++..++.++..+..++.+ .
T Consensus        10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~   88 (280)
T PF13429_consen   10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L   88 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence            3446677777777777777777655443  366777777777777777777777777777777777777777666666 5


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcC
Q 005594          128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPAYYNLGVVYSELM  205 (689)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g  205 (689)
                      ..+++++|+..++++.+..++ +..       +.....++...++++++...++++....  +.++..+..+|.++.+.|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~-~~~-------l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G  160 (280)
T PF13429_consen   89 QDGDPEEALKLAEKAYERDGD-PRY-------LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG  160 (280)
T ss_dssp             -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred             ccccccccccccccccccccc-cch-------hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence            777777777777776655433 222       3334445566677777777776655443  455666677777777777


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH
Q 005594          206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG  285 (689)
Q Consensus       206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  285 (689)
                      +.++|+..++++++.+|++..+...++.++...|+++++.+.++...+..|+                            
T Consensus       161 ~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~----------------------------  212 (280)
T PF13429_consen  161 DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD----------------------------  212 (280)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT----------------------------
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC----------------------------
Confidence            7777777777777777777777777777776667666666666555554444                            


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594          286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS  362 (689)
Q Consensus       286 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  362 (689)
                                   ++..+..+|.++...|++++|+.+|+++++.+|+++..+..+|.++...|+.++|..+++++++
T Consensus       213 -------------~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  213 -------------DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             -------------SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred             -------------HHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                         3344445555555555555555555555555555555555555555555666666555555543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.5e-20  Score=177.47  Aligned_cols=311  Identities=18%  Similarity=0.134  Sum_probs=215.9

Q ss_pred             CCCCCcccccccccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHc
Q 005594           32 TSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL  111 (689)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  111 (689)
                      ...++...........++.....+..++...+|.+|+..+..+++..|+++..|...+.++...+++++|.-..++.+++
T Consensus        33 ~~~~~~~s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~  112 (486)
T KOG0550|consen   33 AATSPEYSFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL  112 (486)
T ss_pred             hccCccccccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec
Confidence            33334444444445677888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC---C
Q 005594          112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---P  188 (689)
Q Consensus       112 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~  188 (689)
                      +|.........+.++...++..+|...++.        ..+       +           ....|+..+++.+..+   |
T Consensus       113 kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~--------~~~-------~-----------~~anal~~~~~~~~s~s~~p  166 (486)
T KOG0550|consen  113 KDGFSKGQLREGQCHLALSDLIEAEEKLKS--------KQA-------Y-----------KAANALPTLEKLAPSHSREP  166 (486)
T ss_pred             CCCccccccchhhhhhhhHHHHHHHHHhhh--------hhh-------h-----------HHhhhhhhhhcccccccCCc
Confidence            999999999999999999999999888871        111       0           1223334444443332   3


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHH
Q 005594          189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA  268 (689)
Q Consensus       189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  268 (689)
                      ....+....+.|+...|++++|.+.--..+++++.+.++++..|.++...++.+.|+..|++++.++|+.......    
T Consensus       167 ac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~----  242 (486)
T KOG0550|consen  167 ACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA----  242 (486)
T ss_pred             hhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH----
Confidence            3445667788999999999999999999999999999999999999999999999999999999999986542211    


Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHH
Q 005594          269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIY  344 (689)
Q Consensus       269 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~  344 (689)
                      ..                         .|+-...+..-|.-.++.|++.+|.+.|..++.++|++    +..|.+++.+.
T Consensus       243 ~~-------------------------~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~  297 (486)
T KOG0550|consen  243 SM-------------------------MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVN  297 (486)
T ss_pred             hh-------------------------hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhh
Confidence            00                         01111233344444555555555555555555555543    23344444444


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005594          345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA  397 (689)
Q Consensus       345 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  397 (689)
                      ..+|+..+|+...+.++++++....++...|.|+..+++|++|.+.|+++++.
T Consensus       298 ~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  298 IRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             cccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44444444444444444444444444444444444444444444444444444

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.86  E-value=4.1e-18  Score=190.01  Aligned_cols=369  Identities=14%  Similarity=0.031  Sum_probs=294.5

Q ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHH
Q 005594           47 EGKDALSYANILRSRNKFVDALALYEIVLEKDS--GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--DPQNACAHTHC  122 (689)
Q Consensus        47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l  122 (689)
                      +...+......+...|++++|+++|+.+....+  -+...+..+..++...++++.|.+.+..+.+.  .| +...+..+
T Consensus        86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~L  164 (697)
T PLN03081         86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRV  164 (697)
T ss_pred             CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHH
Confidence            444677778889999999999999999876543  36678888889999999999999999988874  34 57788899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH----------------------------HhHHHHHHcCChH
Q 005594          123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT----------------------------DLGTSLKLAGNTQ  174 (689)
Q Consensus       123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~----------------------------~l~~~~~~~~~~~  174 (689)
                      ...|.+.|++++|.+.|+++.+  |+ ...+..+...+.                            .+...+...|...
T Consensus       165 i~~y~k~g~~~~A~~lf~~m~~--~~-~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~  241 (697)
T PLN03081        165 LLMHVKCGMLIDARRLFDEMPE--RN-LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR  241 (697)
T ss_pred             HHHHhcCCCHHHHHHHHhcCCC--CC-eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence            9999999999999999998754  22 222222222222                            2223445567778


Q ss_pred             HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594          175 DGIQKYYEALKID-PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA  253 (689)
Q Consensus       175 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  253 (689)
                      .+.+.+..+++.. ..+..++..+...|.+.|++++|.+.|++..   +.+..+|..+...|.+.|+.++|++.|++..+
T Consensus       242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~  318 (697)
T PLN03081        242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD  318 (697)
T ss_pred             HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            8888877776653 3356788899999999999999999998763   45788999999999999999999999999876


Q ss_pred             c--CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005594          254 V--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN  330 (689)
Q Consensus       254 ~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  330 (689)
                      .  .|+. .       ++..+...+...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.+.|++..+  
T Consensus       319 ~g~~pd~-~-------t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--  388 (697)
T PLN03081        319 SGVSIDQ-F-------TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--  388 (697)
T ss_pred             cCCCCCH-H-------HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence            4  3432 2       34444455556789999999999999876 55677899999999999999999999998754  


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHH
Q 005594          331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TYAEAYNN  407 (689)
Q Consensus       331 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~  407 (689)
                       .+...|+.+...|.+.|+.++|++.|++..+.. .-+..++..+...+.+.|+.++|.++|+...+..+  -+...|..
T Consensus       389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~  467 (697)
T PLN03081        389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC  467 (697)
T ss_pred             -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence             357789999999999999999999999988653 22466788888999999999999999999987532  23567889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594          408 LGVLYRDAGSISLAIDAYEQCLKIDPD  434 (689)
Q Consensus       408 la~~~~~~g~~~~A~~~~~~al~~~p~  434 (689)
                      +..+|.+.|+.++|.+.+++. ...|+
T Consensus       468 li~~l~r~G~~~eA~~~~~~~-~~~p~  493 (697)
T PLN03081        468 MIELLGREGLLDEAYAMIRRA-PFKPT  493 (697)
T ss_pred             HHHHHHhcCCHHHHHHHHHHC-CCCCC
Confidence            999999999999999998875 23444

>PLN03077 Protein ECB2; Provisional

Probab=99.86  E-value=5.3e-18  Score=193.78  Aligned_cols=387  Identities=15%  Similarity=0.076  Sum_probs=256.4

Q ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCC----------------------------------CHHHHHhHHHHHH
Q 005594           50 DALSYANILRSRNKFVDALALYEIVLEK--DSG----------------------------------NVEAHIGKGICLQ   93 (689)
Q Consensus        50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~----------------------------------~~~~~~~la~~~~   93 (689)
                      .|..+...|.+.|++++|+.+|+++.+.  .|+                                  +...+..+...|.
T Consensus       255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~  334 (857)
T PLN03077        255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL  334 (857)
T ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence            3455555666666666666666666543  222                                  2223333444444


Q ss_pred             HhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhHHHHHHcC
Q 005594           94 MQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD--PSYKPAAECLAIVLTDLGTSLKLAG  171 (689)
Q Consensus        94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~l~~~~~~~~  171 (689)
                      +.|++++|.+.|++..   ..+...|..+...|.+.|++++|++.|+++.+..  |+...        +..+-..+...|
T Consensus       335 k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t--------~~~ll~a~~~~g  403 (857)
T PLN03077        335 SLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT--------IASVLSACACLG  403 (857)
T ss_pred             hcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee--------HHHHHHHHhccc
Confidence            4444444444444432   1233344445555555555555555555443322  32211        222223344445


Q ss_pred             ChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594          172 NTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER  250 (689)
Q Consensus       172 ~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  250 (689)
                      ++++|.+.+..+.+... .+..++..+...|.+.|++++|.+.|++..+   .+...|..+...|.+.|+.++|+..|++
T Consensus       404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~  480 (857)
T PLN03077        404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQ  480 (857)
T ss_pred             hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence            55555555555554422 2355667777888888888888888887543   3456788888888889999999999988


Q ss_pred             HHhcCCCcHHHHhhHHHHHH----------------------------HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHH
Q 005594          251 CLAVSPNFEIAKNNMAIALT----------------------------DLGTKVKLEGDINQGVAYYKKALYYNWHYADA  302 (689)
Q Consensus       251 al~~~~~~~~~~~~~~~~~~----------------------------~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  302 (689)
                      .....+.+...+..+..++.                            .+-..|.+.|+.++|...|+..    +.+..+
T Consensus       481 m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s  556 (857)
T PLN03077        481 MLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVS  556 (857)
T ss_pred             HHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhh
Confidence            87543333333332222222                            2235677889999999999876    557788


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHH
Q 005594          303 MYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVVY  378 (689)
Q Consensus       303 ~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~  378 (689)
                      |..+...|...|+.++|++.|+++.+.  .|+ ...+..+-..+.+.|+.++|.++|+...+..+  .+...+..+..++
T Consensus       557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l  635 (857)
T PLN03077        557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL  635 (857)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            999999999999999999999998875  344 55666777788999999999999999884432  2357889999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHH
Q 005594          379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF  458 (689)
Q Consensus       379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  458 (689)
                      .+.|++++|.+.+++. ...|+ ..+|..|-..+...|+.+.+....+++++++|++...+.  +++-.|...|..++..
T Consensus       636 ~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~--ll~n~ya~~g~~~~a~  711 (857)
T PLN03077        636 GRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI--LLCNLYADAGKWDEVA  711 (857)
T ss_pred             HhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH--HHHHHHHHCCChHHHH
Confidence            9999999999999875 35565 677888888889999999999999999999999876644  3444566666655544


Q ss_pred             H
Q 005594          459 E  459 (689)
Q Consensus       459 ~  459 (689)
                      +
T Consensus       712 ~  712 (857)
T PLN03077        712 R  712 (857)
T ss_pred             H
Confidence            3

>PRK12370 invasion protein regulator; Provisional

Probab=99.86  E-value=3e-19  Score=192.17  Aligned_cols=249  Identities=12%  Similarity=-0.005  Sum_probs=139.5

Q ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005594          171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL  241 (689)
Q Consensus       171 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  241 (689)
                      +.+++|+..|+++++.+|+++.++..+|.++...         +++++|+..++++++++|+++.++..+|.++...|++
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence            3456777777777777777777777777666533         2366777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005594          242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV  321 (689)
Q Consensus       242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  321 (689)
                      ++|+..|+++++++|++...+..++.++..       .|++++|+..++++++.+|.++.....++.++...|++++|+.
T Consensus       355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-------~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~  427 (553)
T PRK12370        355 IVGSLLFKQANLLSPISADIKYYYGWNLFM-------AGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIR  427 (553)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence            777777777666666655444333333322       3455555555555555555555444444444455555555555


Q ss_pred             HHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594          322 FYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT  400 (689)
Q Consensus       322 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  400 (689)
                      .+++++... |+++..+..+|.++...|++++|+..+++.....|....+...++..|...|+  +|...+++.++....
T Consensus       428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~  505 (553)
T PRK12370        428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQR  505 (553)
T ss_pred             HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH
Confidence            555555443 44555555555555555555555555555555555555555555555555542  444444444433222


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594          401 YAEAYNNLGVLYRDAGSISLAIDAYEQCL  429 (689)
Q Consensus       401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al  429 (689)
                      ...-...+..+|.-.|+.+.+..+ +++.
T Consensus       506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~  533 (553)
T PRK12370        506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFK  533 (553)
T ss_pred             hhcCchHHHHHHHHHhhhHHHHHH-HHhh
Confidence            221122244455555555554444 4433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.86  E-value=3.5e-18  Score=176.17  Aligned_cols=295  Identities=10%  Similarity=-0.032  Sum_probs=144.0

Q ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhH-HHHHHHhCCHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHH
Q 005594           50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK-GICLQMQNMGRLAFDSFSEAVKLDPQNACA-HTHCGILYK  127 (689)
Q Consensus        50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~  127 (689)
                      ..+..|...+..|+|++|.+.+.+.-+..+ ++..++.+ +......|+++.|..++.++.+.+|++..+ ....+.++.
T Consensus        86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l  164 (398)
T PRK10747         86 KQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL  164 (398)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            344455555555555555555444333222 22222222 333355555555555555555555554322 223355555


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH--------HHHH
Q 005594          128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY--------NLGV  199 (689)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------~la~  199 (689)
                      ..|++++|...++++.+.+|+++.+       +..++.++...|++++|++.+.+..+....+.....        .+..
T Consensus       165 ~~g~~~~Al~~l~~~~~~~P~~~~a-------l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~  237 (398)
T PRK10747        165 ARNENHAARHGVDKLLEVAPRHPEV-------LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD  237 (398)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555544       333444444455555555555555544433322111        1111


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhc
Q 005594          200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE  279 (689)
Q Consensus       200 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~  279 (689)
                      ......+-+...+.++...+..|+++.+...++..+...|+.++|.+.++++++..+                       
T Consensus       238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-----------------------  294 (398)
T PRK10747        238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-----------------------  294 (398)
T ss_pred             HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----------------------
Confidence            111112222222222332233344555555555555555555555555555554322                       


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594          280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM  359 (689)
Q Consensus       280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  359 (689)
                                         ++......+.+  ..++.+++++.+++.++.+|+++..+..+|.++...+++++|.++|++
T Consensus       295 -------------------~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~  353 (398)
T PRK10747        295 -------------------DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA  353 (398)
T ss_pred             -------------------CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                               22222222222  235556666666666666666666666666666666666666666666


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005594          360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA  397 (689)
Q Consensus       360 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  397 (689)
                      +++..|++.. +..++.++.+.|+.++|.++|++++.+
T Consensus       354 al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        354 ALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             HHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            6666555432 345666666666666666666666554

>PRK12370 invasion protein regulator; Provisional

Probab=99.86  E-value=3.9e-19  Score=191.26  Aligned_cols=248  Identities=15%  Similarity=0.030  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHH
Q 005594           98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDE---------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK  168 (689)
Q Consensus        98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~  168 (689)
                      +++|+..|+++++++|+++.++..+|.++...         +++++|+..++++++++|++..+       +..+|.++.
T Consensus       277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a-------~~~lg~~~~  349 (553)
T PRK12370        277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA-------LGLLGLINT  349 (553)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHH
Confidence            34455555555555555544444444443321         12445555555555555554443       333344444


Q ss_pred             HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005594          169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY  248 (689)
Q Consensus       169 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  248 (689)
                      ..|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|++++|+..+
T Consensus       350 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~  429 (553)
T PRK12370        350 IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG  429 (553)
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555544444434444444445555555555


Q ss_pred             HHHHhcC-CCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005594          249 ERCLAVS-PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF  327 (689)
Q Consensus       249 ~~al~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  327 (689)
                      ++++... |+++..+..++.++..       .|++++|...+++.....|....+...++..+...|  ++|...+++.+
T Consensus       430 ~~~l~~~~p~~~~~~~~la~~l~~-------~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll  500 (553)
T PRK12370        430 DELRSQHLQDNPILLSMQVMFLSL-------KGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL  500 (553)
T ss_pred             HHHHHhccccCHHHHHHHHHHHHh-------CCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence            5544442 3344444444444433       235555555555544444444445555555555555  24444444444


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594          328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS  362 (689)
Q Consensus       328 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  362 (689)
                      +..............++.-.|+-+.+..+ +++.+
T Consensus       501 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~  534 (553)
T PRK12370        501 ESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN  534 (553)
T ss_pred             HHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence            43222222222245555555555555555 44443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.86  E-value=4e-20  Score=182.63  Aligned_cols=260  Identities=19%  Similarity=0.247  Sum_probs=199.8

Q ss_pred             HHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005594          161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD  240 (689)
Q Consensus       161 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  240 (689)
                      +..|..+.+.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            45788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCCHHH
Q 005594          241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGEMLKFDM  318 (689)
Q Consensus       241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~  318 (689)
                      -.+|++++.+-+...|........--.-.............+..-.++|-.+....|  .++++...||.+|...|+|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            999999999999887764311100000000000000111234445566666666666  577888888888888888888


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005594          319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN  398 (689)
Q Consensus       319 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  398 (689)
                      |+.+|+.+|...|++...|+.||-.+....+.++|+..|++|+++.|....++++||..+..+|.|++|.++|-.+|.+.
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq  528 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ  528 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888775


Q ss_pred             CCc----------HHHHHHHHHHHHHcCCHHH
Q 005594          399 PTY----------AEAYNNLGVLYRDAGSISL  420 (689)
Q Consensus       399 p~~----------~~~~~~la~~~~~~g~~~~  420 (689)
                      +..          ..+|..|-.++..+++.+-
T Consensus       529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~  560 (579)
T KOG1125|consen  529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDL  560 (579)
T ss_pred             hcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence            431          2355555555555555543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.86  E-value=5.2e-20  Score=168.36  Aligned_cols=245  Identities=19%  Similarity=0.268  Sum_probs=225.3

Q ss_pred             HHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005594          160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG  239 (689)
Q Consensus       160 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  239 (689)
                      -..+|.||.+.|.+.+|.+.++.+++..|. ++.+..|+.+|.+..+...|+..+...++..|.+...+..++.++..++
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~  304 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME  304 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence            356899999999999999999999987665 8899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 005594          240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA  319 (689)
Q Consensus       240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  319 (689)
                      ++++|.++|+.+++..|.+.++...+       +.-|+-.++.+-|+.+|++.+++.-.+++.+.++|.+.+..++++-+
T Consensus       305 ~~~~a~~lYk~vlk~~~~nvEaiAci-------a~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~  377 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLHPINVEAIACI-------AVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV  377 (478)
T ss_pred             hHHHHHHHHHHHHhcCCccceeeeee-------eeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence            99999999999999999987654433       44445578999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005594          320 IVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA  396 (689)
Q Consensus       320 ~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  396 (689)
                      +..|++++....   ...++|+++|.+....|++..|..+|+-++..++++.+++.+||.+-.+.|+.++|..+++.+-.
T Consensus       378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s  457 (478)
T KOG1129|consen  378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS  457 (478)
T ss_pred             HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence            999999998743   34789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHH
Q 005594          397 ANPTYAEAYNNLGVLY  412 (689)
Q Consensus       397 ~~p~~~~~~~~la~~~  412 (689)
                      ..|+-.+..++++.+-
T Consensus       458 ~~P~m~E~~~Nl~~~s  473 (478)
T KOG1129|consen  458 VMPDMAEVTTNLQFMS  473 (478)
T ss_pred             hCccccccccceeEEe
Confidence            9999888888776543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=4e-20  Score=182.63  Aligned_cols=267  Identities=21%  Similarity=0.267  Sum_probs=218.0

Q ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005594           46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL  125 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  125 (689)
                      .+...-+..|..+++.|+..+|.-+|+.+++.+|.++++|..||.+....++-..|+..++++++++|+|..++..||..
T Consensus       283 ~~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVS  362 (579)
T KOG1125|consen  283 IDHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVS  362 (579)
T ss_pred             cCCCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            34556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH
Q 005594          126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--HYAPAYYNLGVVYSE  203 (689)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~  203 (689)
                      |...|.-.+|..++.+.+...|........--...............+..-.+.|..+....|  .+++++..||.+|..
T Consensus       363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l  442 (579)
T KOG1125|consen  363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL  442 (579)
T ss_pred             HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence            999999999999999999987764221000000000000000111223445566777777777  689999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHH
Q 005594          204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN  283 (689)
Q Consensus       204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  283 (689)
                      .|+|++|+.+|+.|+..+|++...|..||-.+....+.++|+..|++|+++.|.+..++++++..+.++       |.|.
T Consensus       443 s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl-------G~yk  515 (579)
T KOG1125|consen  443 SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL-------GAYK  515 (579)
T ss_pred             chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh-------hhHH
Confidence            999999999999999999999999999999999999999999999999999999998888888877775       5999


Q ss_pred             HHHHHHHHHHhhCCCC----------HHHHHHHHHHHHhcCCHHHH
Q 005594          284 QGVAYYKKALYYNWHY----------ADAMYNLGVAYGEMLKFDMA  319 (689)
Q Consensus       284 ~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~g~~~~A  319 (689)
                      +|.++|-.++.+.+..          ..+|-.|=.++..+++.+.+
T Consensus       516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l  561 (579)
T KOG1125|consen  516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL  561 (579)
T ss_pred             HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence            9999999999876541          23555555555555555533

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.85  E-value=6.1e-19  Score=154.60  Aligned_cols=215  Identities=24%  Similarity=0.240  Sum_probs=198.0

Q ss_pred             ccccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 005594           42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH  121 (689)
Q Consensus        42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  121 (689)
                      .......+..+.+|..|+..|++..|...++++|+.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++.+
T Consensus        29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN  108 (250)
T COG3063          29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN  108 (250)
T ss_pred             ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh
Confidence            33445677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 005594          122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY  201 (689)
Q Consensus       122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  201 (689)
                      .|..++.+|++++|...|++++.. |.....    +..+.++|.|..+.|+++.|..+|+++++.+|+.+.....++...
T Consensus       109 YG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~----s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~  183 (250)
T COG3063         109 YGAFLCAQGRPEEAMQQFERALAD-PAYGEP----SDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH  183 (250)
T ss_pred             hhHHHHhCCChHHHHHHHHHHHhC-CCCCCc----chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence            999999999999999999999873 443332    445899999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 005594          202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA  261 (689)
Q Consensus       202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  261 (689)
                      +..|+|..|..++++.....+-..+.+.....+-...|+-+.+-++=.+.-...|...+.
T Consensus       184 ~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         184 YKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             HhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            999999999999999998888888999999999999999999999988888889987643

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.84  E-value=3.1e-17  Score=150.52  Aligned_cols=320  Identities=19%  Similarity=0.198  Sum_probs=254.2

Q ss_pred             hHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHH
Q 005594          163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYKN  237 (689)
Q Consensus       163 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~  237 (689)
                      .|.-+...++.++|+..|..+++.+|...++...||.+|...|..+.|+..-+..++. |+.     ..+...+|.-|..
T Consensus        41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~  119 (389)
T COG2956          41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMA  119 (389)
T ss_pred             hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHH
Confidence            4555666789999999999999999999999999999999999999999998877654 432     4578899999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHh
Q 005594          238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-----ADAMYNLGVAYGE  312 (689)
Q Consensus       238 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~  312 (689)
                      .|-++.|...|....+...--.       .++..+-.+|....++++|++..++..+..++.     +..+..++..+..
T Consensus       120 aGl~DRAE~~f~~L~de~efa~-------~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~  192 (389)
T COG2956         120 AGLLDRAEDIFNQLVDEGEFAE-------GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA  192 (389)
T ss_pred             hhhhhHHHHHHHHHhcchhhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence            9999999999999876543322       245556667777899999999999999988775     3568889999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 005594          313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMI  391 (689)
Q Consensus       313 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~  391 (689)
                      ..+.+.|+..+.++++.+|++..+-..+|.++...|+|++|++.++.+++.+|+. +++...|..+|.++|+.++.+..+
T Consensus       193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL  272 (389)
T COG2956         193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL  272 (389)
T ss_pred             hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999987 678999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHHHHHHHHHHHhhh
Q 005594          392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRL  471 (689)
Q Consensus       392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (689)
                      .++.+..++ +++...++..-....-.+.|..++.+-+...|+-...+.-.-+.+.-...|...+.+...+.......+.
T Consensus       273 ~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~  351 (389)
T COG2956         273 RRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRR  351 (389)
T ss_pred             HHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhh
Confidence            999999887 5666777787788888899999999999999986543322212222223333333333333222211111


Q ss_pred             ccccccCCCCCCCCCCeEEEEecCCcccch
Q 005594          472 YSQYTSWDNTKDPERPLVIGYVSPDYFTHS  501 (689)
Q Consensus       472 ~~~~~~~~~~~~~~~~lriG~~S~d~~~h~  501 (689)
                      .+          +=|.-+.||-+.-|.+|-
T Consensus       352 ~~----------~YRC~~CGF~a~~l~W~C  371 (389)
T COG2956         352 KP----------RYRCQNCGFTAHTLYWHC  371 (389)
T ss_pred             cC----------CceecccCCcceeeeeeC
Confidence            11          125567788777777663

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.83  E-value=5.7e-18  Score=167.05  Aligned_cols=231  Identities=18%  Similarity=0.126  Sum_probs=155.4

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 005594          129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD  208 (689)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  208 (689)
                      .+..+.++..+.+++...+-++..   .+..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+++
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~---~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~  115 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEE---RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD  115 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHh---hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH
Confidence            456778888888888755543332   34558888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHH
Q 005594          209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY  288 (689)
Q Consensus       209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  288 (689)
                      +|+..|+++++++|++..++.++|.++...|++++|++.++++++.+|+++...     .+..   +....+++++|+..
T Consensus       116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-----~~~~---l~~~~~~~~~A~~~  187 (296)
T PRK11189        116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-----LWLY---LAESKLDPKQAKEN  187 (296)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-----HHHH---HHHccCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999876211     1111   11224567777777


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594          289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF-------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL  361 (689)
Q Consensus       289 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  361 (689)
                      +++.....+..  .+. .+......|+..++ ..++.+.       ++.|...++|+++|.++...|++++|+.+|++++
T Consensus       188 l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al  263 (296)
T PRK11189        188 LKQRYEKLDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL  263 (296)
T ss_pred             HHHHHhhCCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            76655433221  111 23444444544332 1222222       3334444555555555555555555555555555


Q ss_pred             hcCC-CCHHHHHHH
Q 005594          362 SIKP-NFSQSLNNL  374 (689)
Q Consensus       362 ~~~p-~~~~~~~~l  374 (689)
                      +.+| +..+..+.+
T Consensus       264 ~~~~~~~~e~~~~~  277 (296)
T PRK11189        264 ANNVYNFVEHRYAL  277 (296)
T ss_pred             HhCCchHHHHHHHH
Confidence            5554 333333333

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.83  E-value=4.2e-18  Score=177.11  Aligned_cols=378  Identities=19%  Similarity=0.226  Sum_probs=297.0

Q ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHH--------------------------HHhCCHHHHHH
Q 005594           50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL--------------------------QMQNMGRLAFD  103 (689)
Q Consensus        50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~--------------------------~~~g~~~~A~~  103 (689)
                      .....+.+......|.+|...+....... .+-+.+..+..|+                          ..+++...|+.
T Consensus       401 n~~akgl~~ie~~~y~Daa~tl~lv~~~s-~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~  479 (1238)
T KOG1127|consen  401 NQRAKGLAPIEANVYTDAAITLDLVSSLS-FNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALH  479 (1238)
T ss_pred             hhhhcchhHHHHhhchHHHHHHHHHHHhh-cCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            34555566666677777777776665544 1111111111111                          23345788999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHH
Q 005594          104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA  183 (689)
Q Consensus       104 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~a  183 (689)
                      .|-+++++++.-..++..+|.+|...-+...|.++|.++.++++.+.++       ....+..+....+++.|......+
T Consensus       480 ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea-------aaa~adtyae~~~we~a~~I~l~~  552 (1238)
T KOG1127|consen  480 ALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA-------AAASADTYAEESTWEEAFEICLRA  552 (1238)
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh-------HHHHHHHhhccccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998777       455666777789999999997766


Q ss_pred             HhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 005594          184 LKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA  261 (689)
Q Consensus       184 l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  261 (689)
                      -+..|..  ...|..+|..|.+.++..+|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..+.|.+...
T Consensus       553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~  632 (1238)
T KOG1127|consen  553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG  632 (1238)
T ss_pred             hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence            6666543  34567799999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             HhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----
Q 005594          262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-------ADAMYNLGVAYGEMLKFDMAIVFYELAFHF-----  329 (689)
Q Consensus       262 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----  329 (689)
                      .+..+.....       .|.+.+|+..+...+......       .+.+..++..+...|-..+|..+++++++.     
T Consensus       633 ~fk~A~~ecd-------~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l  705 (1238)
T KOG1127|consen  633 RFKEAVMECD-------NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL  705 (1238)
T ss_pred             HHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            7666665555       468999998888877654332       344555555555555555555555554332     


Q ss_pred             ------------------------CC-----------------------------------------CCHHHHHHHHHHH
Q 005594          330 ------------------------NP-----------------------------------------HCAEACNNLGVIY  344 (689)
Q Consensus       330 ------------------------~p-----------------------------------------~~~~~~~~la~~~  344 (689)
                                              .|                                         ..+..|+++|..|
T Consensus       706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny  785 (1238)
T KOG1127|consen  706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY  785 (1238)
T ss_pred             HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence                                    00                                         1134577778777


Q ss_pred             HH--------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005594          345 KD--------RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG  416 (689)
Q Consensus       345 ~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  416 (689)
                      +.        +.+...|+.++.+++++..++...|..||.+ ...|++.-|..+|-+.+..+|.....|.++|.++....
T Consensus       786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~  864 (1238)
T KOG1127|consen  786 LRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ  864 (1238)
T ss_pred             HHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence            65        2344689999999999999999999999988 66799999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCChhhHhhHH
Q 005594          417 SISLAIDAYEQCLKIDPDSRNAGQNRL  443 (689)
Q Consensus       417 ~~~~A~~~~~~al~~~p~~~~~~~~~~  443 (689)
                      +++-|...|.++..++|.+...|....
T Consensus       865 d~E~A~~af~~~qSLdP~nl~~WlG~A  891 (1238)
T KOG1127|consen  865 DFEHAEPAFSSVQSLDPLNLVQWLGEA  891 (1238)
T ss_pred             cHHHhhHHHHhhhhcCchhhHHHHHHH
Confidence            999999999999999999988776543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=4.4e-16  Score=154.15  Aligned_cols=391  Identities=14%  Similarity=0.042  Sum_probs=272.9

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK  127 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  127 (689)
                      ...++..-..+...|+|++|++...+++...|++..+....-.++.+.++|++|+...++-....-.+ ...+..+.|.+
T Consensus        12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Y   90 (652)
T KOG2376|consen   12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEY   90 (652)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHH
Confidence            36788888899999999999999999999999999999999999999999999995554433222122 22378899999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC--------------------
Q 005594          128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--------------------  187 (689)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------------------  187 (689)
                      +.+..++|+..++   ..++.+...       +...+.+++++|+|++|+..|+..++.+                    
T Consensus        91 rlnk~Dealk~~~---~~~~~~~~l-------l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~  160 (652)
T KOG2376|consen   91 RLNKLDEALKTLK---GLDRLDDKL-------LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ  160 (652)
T ss_pred             HcccHHHHHHHHh---cccccchHH-------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence            9999999999998   334444333       4445666777799999999998875432                    


Q ss_pred             ----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC-------CHHHHHHHHHHHHHcCCH
Q 005594          188 ----------PH-YAPAYYNLGVVYSELMQYDTALGCYEKAALER--------PM-------YAEAYCNMGVIYKNRGDL  241 (689)
Q Consensus       188 ----------~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~-------~~~~~~~la~~~~~~g~~  241 (689)
                                |. ..+.+++.+.++...|+|.+|++.+++++.+.        .+       -..+...++.++..+|+.
T Consensus       161 ~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt  240 (652)
T KOG2376|consen  161 VQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT  240 (652)
T ss_pred             HHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence                      11 35678999999999999999999999995431        11       124567889999999999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHhhHHHHH------------------------------------------HHhhhhhhhc
Q 005594          242 ESAIACYERCLAVSPNFEIAKNNMAIAL------------------------------------------TDLGTKVKLE  279 (689)
Q Consensus       242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~------------------------------------------~~l~~~~~~~  279 (689)
                      ++|...|...++.++.+.........-+                                          .+.+.+.+..
T Consensus       241 ~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t  320 (652)
T KOG2376|consen  241 AEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT  320 (652)
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999998776542211111100                                          0111111111


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594          280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQ  358 (689)
Q Consensus       280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~  358 (689)
                      +..+.+.+.....-...|...--.........+...+.+|+.++....+.+|.. ..+...++.+...+|+++.|++.+.
T Consensus       321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~  400 (652)
T KOG2376|consen  321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS  400 (652)
T ss_pred             hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            111222211111111122222112222333333337888999999998888887 7788889999999999999999998


Q ss_pred             HHHhc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005594          359 MALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDA  424 (689)
Q Consensus       359 ~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~  424 (689)
                      ..+..       ....+.+-..+-..+++.++.+-|...+.+++.-       .+.....+..++....+.|+-++|...
T Consensus       401 ~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~  480 (652)
T KOG2376|consen  401 LFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL  480 (652)
T ss_pred             HHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence            44321       1223444455555677777766666666666653       233344566778888888999999999


Q ss_pred             HHHHHhcCCCChhhHhhHHHHhhhc
Q 005594          425 YEQCLKIDPDSRNAGQNRLLAMNYI  449 (689)
Q Consensus       425 ~~~al~~~p~~~~~~~~~~~~~~~~  449 (689)
                      +++.++.+|++.++...+..+.+++
T Consensus       481 leel~k~n~~d~~~l~~lV~a~~~~  505 (652)
T KOG2376|consen  481 LEELVKFNPNDTDLLVQLVTAYARL  505 (652)
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHhc
Confidence            9999999999999999888777765

>PLN03077 Protein ECB2; Provisional

Probab=99.82  E-value=1.1e-16  Score=183.00  Aligned_cols=360  Identities=10%  Similarity=0.012  Sum_probs=280.0

Q ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHH
Q 005594           46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--PQNACAHTHCG  123 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la  123 (689)
                      .+...+..+...|.+.|++++|.++|++..+   .+...|..+...|.+.|++++|++.|+++.+..  |+. ..+..+-
T Consensus       321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll  396 (857)
T PLN03077        321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVL  396 (857)
T ss_pred             cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHH
Confidence            3566778888999999999999999998643   356789999999999999999999999886643  544 3455555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005594          124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE  203 (689)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  203 (689)
                      ..+...|++++|.+.++.+.+.......      .++..+...|.+.|++++|.+.|++..+   .+...|..+...|.+
T Consensus       397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~------~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~  467 (857)
T PLN03077        397 SACACLGDLDVGVKLHELAERKGLISYV------VVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRL  467 (857)
T ss_pred             HHHhccchHHHHHHHHHHHHHhCCCcch------HHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHH
Confidence            6778888999999988888876543221      2356677778888888888888887543   345678888888888


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHH-----------------------------------HHHHHHHHHHcCCHHHHHHHH
Q 005594          204 LMQYDTALGCYEKAALERPMYAEA-----------------------------------YCNMGVIYKNRGDLESAIACY  248 (689)
Q Consensus       204 ~g~~~~A~~~~~~al~~~p~~~~~-----------------------------------~~~la~~~~~~g~~~~A~~~~  248 (689)
                      .|+.++|+..|+++....+.+...                                   ...+...|.+.|+.++|...|
T Consensus       468 ~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f  547 (857)
T PLN03077        468 NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF  547 (857)
T ss_pred             CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence            888888888888876532222222                                   233446777888888888888


Q ss_pred             HHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005594          249 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-YADAMYNLGVAYGEMLKFDMAIVFYELAF  327 (689)
Q Consensus       249 ~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al  327 (689)
                      +..    +.+...|.       .+...+...|+.++|+++|++..+.... +..++..+...+...|+.++|.++|+.+.
T Consensus       548 ~~~----~~d~~s~n-------~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~  616 (857)
T PLN03077        548 NSH----EKDVVSWN-------ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME  616 (857)
T ss_pred             Hhc----CCChhhHH-------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence            775    33333443       4444555678999999999998875322 34556667778999999999999999998


Q ss_pred             hhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 005594          328 HFN--PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY  405 (689)
Q Consensus       328 ~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  405 (689)
                      +..  ..+...|..+..++.+.|++++|.+.+++. ...|+ ..+|..|-..+...|+.+.+....+++++++|++...+
T Consensus       617 ~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y  694 (857)
T PLN03077        617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY  694 (857)
T ss_pred             HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Confidence            543  234678999999999999999999999885 34554 66788888888889999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          406 NNLGVLYRDAGSISLAIDAYEQCLKI  431 (689)
Q Consensus       406 ~~la~~~~~~g~~~~A~~~~~~al~~  431 (689)
                      ..++.+|...|++++|.+..+...+.
T Consensus       695 ~ll~n~ya~~g~~~~a~~vr~~M~~~  720 (857)
T PLN03077        695 ILLCNLYADAGKWDEVARVRKTMREN  720 (857)
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHc
Confidence            99999999999999999999887653

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.82  E-value=1.3e-17  Score=160.56  Aligned_cols=206  Identities=20%  Similarity=0.163  Sum_probs=188.8

Q ss_pred             cCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594           45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI  124 (689)
Q Consensus        45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  124 (689)
                      ...+..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+..++..+|.
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  107 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT  107 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005594          125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL  204 (689)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  204 (689)
                      ++...|++++|+..+++++...+...     ....+..+|.++...|++++|...+.+++..+|.+...+..+|.++...
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  182 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQ-----PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR  182 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhcccccc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence            99999999999999999998542211     1223677899999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594          205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS  255 (689)
Q Consensus       205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  255 (689)
                      |++++|...++++++..|.++..+..++.++...|+.++|..+.+.+....
T Consensus       183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF  233 (234)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            999999999999999989889999999999999999999999888776553

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.82  E-value=1.7e-17  Score=163.64  Aligned_cols=239  Identities=18%  Similarity=0.167  Sum_probs=161.0

Q ss_pred             CCHHHHHHHHHHHHHhCC---C-CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005594           62 NKFVDALALYEIVLEKDS---G-NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE  137 (689)
Q Consensus        62 g~~~~A~~~~~~~l~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  137 (689)
                      +..+.++..+.+++...|   . .+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            567788888888886433   2 356788888888888999999988899988888888888888888888888888888


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA  217 (689)
Q Consensus       138 ~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  217 (689)
                      .|+++++++|++..+       +.++|.++...|++++|++.++++++.+|+++.... ...+....+++++|+..+.+.
T Consensus       120 ~~~~Al~l~P~~~~a-------~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~  191 (296)
T PRK11189        120 AFDSVLELDPTYNYA-------YLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQR  191 (296)
T ss_pred             HHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHH
Confidence            888888888887665       666777777778888888888888888887763211 122334566788888888666


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC
Q 005594          218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW  297 (689)
Q Consensus       218 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  297 (689)
                      ....+..  .+. .+.+....|+..++ ..++.+.+....                                  ..+..|
T Consensus       192 ~~~~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~----------------------------------~~~l~~  233 (296)
T PRK11189        192 YEKLDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATD----------------------------------NTELAE  233 (296)
T ss_pred             HhhCCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCC----------------------------------cHHHHH
Confidence            5443221  121 34444555555433 233333322222                                  222234


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHH
Q 005594          298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCAEACNNLGVIYKD  346 (689)
Q Consensus       298 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~  346 (689)
                      ...++|+.+|.++...|++++|+.+|+++++.+| +..+..+.+..+...
T Consensus       234 ~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~  283 (296)
T PRK11189        234 RLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL  283 (296)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            4556677777777777777777777777777775 445555544444443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.82  E-value=1.2e-16  Score=159.89  Aligned_cols=347  Identities=14%  Similarity=0.114  Sum_probs=265.9

Q ss_pred             HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005594           83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD  162 (689)
Q Consensus        83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~  162 (689)
                      ..++..+.-.+..++|.+.++..+.+++..|++++.+...|..+..+|+-++|......++..++.+.-.       |..
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vC-------wHv   80 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVC-------WHV   80 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchh-------HHH
Confidence            4566777777889999999999999999999999999999999999999999999999999998887655       778


Q ss_pred             hHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005594          163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE  242 (689)
Q Consensus       163 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  242 (689)
                      +|.++....+|++|+++|+.++...|++...+..++.+..++++++-....-.+.++..|..-..|...+..+...|++.
T Consensus        81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~  160 (700)
T KOG1156|consen   81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYK  160 (700)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcC---CCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 005594          243 SAIACYERCLAVS---PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA  319 (689)
Q Consensus       243 ~A~~~~~~al~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  319 (689)
                      .|...++...+..   |+...  .....+......+....|..++|++.+..--...-+........+.++..++++++|
T Consensus       161 ~A~~il~ef~~t~~~~~s~~~--~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA  238 (700)
T KOG1156|consen  161 MALEILEEFEKTQNTSPSKED--YEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEA  238 (700)
T ss_pred             HHHHHHHHHHHhhccCCCHHH--HHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhH
Confidence            9999988887765   33222  222333444455666678888888877665443334445666789999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCH-------------HHHHHHHHHH---HHc-
Q 005594          320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV-ECYQMALSIKPNFS-------------QSLNNLGVVY---TVQ-  381 (689)
Q Consensus       320 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~-------------~~~~~la~~~---~~~-  381 (689)
                      ...|...+..+|++...+..+-.++.+-.+--+++ ..|...-+..|...             +....+..++   .+. 
T Consensus       239 ~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg  318 (700)
T KOG1156|consen  239 VKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG  318 (700)
T ss_pred             HHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence            99999999999999998888877775333334444 45554444332210             0000011110   011 


Q ss_pred             ------------CCHHHHHHHHHHHHHh-----C--------------CCc--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          382 ------------GKMDAAAEMIEKAIAA-----N--------------PTY--AEAYNNLGVLYRDAGSISLAIDAYEQC  428 (689)
Q Consensus       382 ------------g~~~~A~~~~~~al~~-----~--------------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a  428 (689)
                                  .+..+. ..+++.+..     .              |-.  ...++.++.-+...|+++.|..+...|
T Consensus       319 ~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A  397 (700)
T KOG1156|consen  319 VPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA  397 (700)
T ss_pred             CCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence                        111111 133333221     1              111  345678899999999999999999999


Q ss_pred             HhcCCCChhhH
Q 005594          429 LKIDPDSRNAG  439 (689)
Q Consensus       429 l~~~p~~~~~~  439 (689)
                      +...|.-.+.+
T Consensus       398 IdHTPTliEly  408 (700)
T KOG1156|consen  398 IDHTPTLIELY  408 (700)
T ss_pred             hccCchHHHHH
Confidence            99999887665

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.81  E-value=1.4e-17  Score=146.10  Aligned_cols=205  Identities=22%  Similarity=0.217  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHH
Q 005594          192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD  271 (689)
Q Consensus       192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  271 (689)
                      .+...||.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++++.|+              
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~--------------  101 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN--------------  101 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC--------------
Confidence            445555666666666666666666666666666666666666666655555555555555555554              


Q ss_pred             hhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCC
Q 005594          272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDN  349 (689)
Q Consensus       272 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~  349 (689)
                                                 +.+++++.|..++.+|++++|...|++++..  .+..+..+.++|.|..+.|+
T Consensus       102 ---------------------------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq  154 (250)
T COG3063         102 ---------------------------NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ  154 (250)
T ss_pred             ---------------------------ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC
Confidence                                       5555666666666666777777777766654  34556677777777777777


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594          350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL  429 (689)
Q Consensus       350 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  429 (689)
                      ++.|..+|+++++++|+.+.....++...++.|++..|..++++.....+-.++.+.....+-...|+-+.|-.+=.+..
T Consensus       155 ~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~  234 (250)
T COG3063         155 FDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ  234 (250)
T ss_pred             chhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777666666666666777777777777777777777


Q ss_pred             hcCCCChh
Q 005594          430 KIDPDSRN  437 (689)
Q Consensus       430 ~~~p~~~~  437 (689)
                      ...|...+
T Consensus       235 r~fP~s~e  242 (250)
T COG3063         235 RLFPYSEE  242 (250)
T ss_pred             HhCCCcHH
Confidence            77776554

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=1.7e-18  Score=163.82  Aligned_cols=277  Identities=19%  Similarity=0.203  Sum_probs=237.4

Q ss_pred             HHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005594          157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK  236 (689)
Q Consensus       157 a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  236 (689)
                      +.-....|..++...+|.+|+..+..+++..|+++..|.+.+..+...+++++|.-..++.++++|.....+...+.++.
T Consensus        49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~  128 (486)
T KOG0550|consen   49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL  128 (486)
T ss_pred             HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence            33456677778888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHH------------hcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 005594          237 NRGDLESAIACYERCL------------AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY  304 (689)
Q Consensus       237 ~~g~~~~A~~~~~~al------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  304 (689)
                      ..++..+|.+.++..-            .+.|.+... ......-..-+.++...+++++|...--..+++++.+.++++
T Consensus       129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~-pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~  207 (486)
T KOG0550|consen  129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSRE-PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALY  207 (486)
T ss_pred             hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCC-chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHH
Confidence            9998888887665211            011111000 000111122234455578999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----H
Q 005594          305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCA------------EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----S  368 (689)
Q Consensus       305 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~  368 (689)
                      ..|.++...++.+.|+..|++++.++|+..            +.+..-|.-.++.|++.+|.++|..++.++|++    .
T Consensus       208 vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na  287 (486)
T KOG0550|consen  208 VRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA  287 (486)
T ss_pred             hcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence            999999999999999999999999998763            456677888999999999999999999999987    4


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594          369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD  434 (689)
Q Consensus       369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  434 (689)
                      ..|.+++.+..++|+..+|+...+.++++++....++...|.++..++++++|++.|+++++...+
T Consensus       288 klY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  288 KLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            478999999999999999999999999999999999999999999999999999999999998776

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=6.6e-15  Score=141.79  Aligned_cols=392  Identities=15%  Similarity=0.093  Sum_probs=306.7

Q ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005594           47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY  126 (689)
Q Consensus        47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  126 (689)
                      +...|+..|+--..++++..|..+|+++|..+..+...|...+.+-++......|...+.+++.+-|.-...|+....+-
T Consensus        72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE  151 (677)
T KOG1915|consen   72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME  151 (677)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            35667778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH--------------------------HHHHHhHHHHHHcCChHHHHHHH
Q 005594          127 KDEGRLVEAAESYHKALSADPSYKPAAECLA--------------------------IVLTDLGTSLKLAGNTQDGIQKY  180 (689)
Q Consensus       127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a--------------------------~~~~~l~~~~~~~~~~~~A~~~~  180 (689)
                      ...|+...|.+.|++.++..|+. .++....                          ..+...+..-...|+...|...|
T Consensus       152 E~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy  230 (677)
T KOG1915|consen  152 EMLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY  230 (677)
T ss_pred             HHhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            99999999999999999999873 2322211                          12344555556677778888888


Q ss_pred             HHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------------------
Q 005594          181 YEALKIDPHYA---PAYYNLGVVYSELMQYDTALGCYEKA----------------------------------------  217 (689)
Q Consensus       181 ~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~a----------------------------------------  217 (689)
                      +++++.-.++.   ..+...|..-..++.++.|.-+|+-+                                        
T Consensus       231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q  310 (677)
T KOG1915|consen  231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ  310 (677)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence            87776644331   22233333333444444444444433                                        


Q ss_pred             ----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhh---hhhcCCHHHHHHHHH
Q 005594          218 ----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK---VKLEGDINQGVAYYK  290 (689)
Q Consensus       218 ----l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~  290 (689)
                          ++.+|.+.++|+..-.+....|+.+.-.+.|++++...|.........-.+|.-+..+   .....+.+.+.+.|+
T Consensus       311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq  390 (677)
T KOG1915|consen  311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ  390 (677)
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence                3356777888998888888899999999999999988876443322222222222221   124678999999999


Q ss_pred             HHHhhCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594          291 KALYYNWH----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN  366 (689)
Q Consensus       291 ~al~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  366 (689)
                      .++++-|.    .+.+|...|.....+.+...|.+.+-.++-..|.+ ........+-.++++++....+|++.++..|.
T Consensus       391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe  469 (677)
T KOG1915|consen  391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPE  469 (677)
T ss_pred             HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH
Confidence            99999886    36789999999999999999999999999999985 44555566777889999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhh
Q 005594          367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-A-EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN  441 (689)
Q Consensus       367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  441 (689)
                      +..+|...|.+-..+|+.+.|...|+-|++...-+ + -.|-.....-...|.++.|...|++.|+..+... ++..
T Consensus       470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWis  545 (677)
T KOG1915|consen  470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWIS  545 (677)
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHh
Confidence            99999999999999999999999999998875433 2 2344555566779999999999999999998766 4443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.81  E-value=1.2e-16  Score=146.70  Aligned_cols=299  Identities=18%  Similarity=0.184  Sum_probs=251.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHH
Q 005594          120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAY  194 (689)
Q Consensus       120 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~  194 (689)
                      +..|.-+.-.++.++|+..|..+++.+|+..++       ...+|+.+...|..+.|+..-+..++. |+.     ..+.
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~-------~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl  110 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEA-------HLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLAL  110 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHH-------HHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence            345666677889999999999999999988776       777889999999999999998877654 443     4578


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhh
Q 005594          195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT  274 (689)
Q Consensus       195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~  274 (689)
                      ..||.-|...|-++.|...|....+...--..+...+..+|....++++|++.-++..++.++..  ...++..|..++.
T Consensus       111 ~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~--~~eIAqfyCELAq  188 (389)
T COG2956         111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY--RVEIAQFYCELAQ  188 (389)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc--hhHHHHHHHHHHH
Confidence            89999999999999999999999877666678999999999999999999999999999988753  4568899999999


Q ss_pred             hhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHH
Q 005594          275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKA  353 (689)
Q Consensus       275 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A  353 (689)
                      .+....+.+.|...++++++.+|+...+-..+|.++...|+|++|++.++.+++.+|+. +++...+..+|.++|+.++.
T Consensus       189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~  268 (389)
T COG2956         189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG  268 (389)
T ss_pred             HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999987 67888999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 005594          354 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD--AGSISLAIDAYEQCL  429 (689)
Q Consensus       354 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al  429 (689)
                      +..+.++.+..++ +++...++..-....-.+.|..++.+-+...|+--..+..+..-...  -|...+.+..++..+
T Consensus       269 ~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv  345 (389)
T COG2956         269 LNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV  345 (389)
T ss_pred             HHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence            9999999998766 45556677777777788999999999999999854333333322222  233555555555544

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.80  E-value=3.7e-17  Score=166.77  Aligned_cols=245  Identities=23%  Similarity=0.316  Sum_probs=206.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Q 005594          187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-  257 (689)
Q Consensus       187 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-  257 (689)
                      .|....+...++..|..+|++++|+..++++++.        .|.-......+|.+|..++++.+|+..|++++.+... 
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            5666777888999999999999999999999987        5555566667999999999999999999999987431 


Q ss_pred             cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005594          258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHF  329 (689)
Q Consensus       258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  329 (689)
                      ....+...+.++.+++..|...|++++|..++++++++..        .-...+.+++.++..++++++|+.++++++++
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            1122335678888999999999999999999999997642        23456888999999999999999999999987


Q ss_pred             --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594          330 --------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQGKMDAAAEMIEK  393 (689)
Q Consensus       330 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~  393 (689)
                              ++.-+..+.++|.+|..+|++++|.++|++++.+.        +.....+.++|..|.+.+++.+|...|.+
T Consensus       355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~  434 (508)
T KOG1840|consen  355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE  434 (508)
T ss_pred             HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence                    22447789999999999999999999999999874        22355889999999999999999999999


Q ss_pred             HHHh-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          394 AIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI  431 (689)
Q Consensus       394 al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  431 (689)
                      +..+       .|+....+.+|+.+|..+|++++|.++.++++..
T Consensus       435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            8876       3455678999999999999999999999998853

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.80  E-value=4.9e-17  Score=156.61  Aligned_cols=202  Identities=26%  Similarity=0.293  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 005594          191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT  270 (689)
Q Consensus       191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  270 (689)
                      ...+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+            
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------------   98 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN------------   98 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------------
Confidence            56677777777777777777777777777777777777777777777777777777776666665554            


Q ss_pred             HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcC
Q 005594          271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PHCAEACNNLGVIYKDRD  348 (689)
Q Consensus       271 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g  348 (689)
                                                   ...+..+|.++...|++++|+..+++++...  +.....+..+|.++...|
T Consensus        99 -----------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  149 (234)
T TIGR02521        99 -----------------------------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG  149 (234)
T ss_pred             -----------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence                                         4445555666666666666666666666542  344566777777777777


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC  428 (689)
Q Consensus       349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  428 (689)
                      ++++|...++++++.+|++..++..+|.++...|++++|...++++++..|.++..+..++.++...|+.++|..+.+.+
T Consensus       150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            77778887877777777777777777888888888888888888777777777777777777777888888887777766


Q ss_pred             HhcCC
Q 005594          429 LKIDP  433 (689)
Q Consensus       429 l~~~p  433 (689)
                      ....|
T Consensus       230 ~~~~~  234 (234)
T TIGR02521       230 QKLFP  234 (234)
T ss_pred             HhhCc
Confidence            65543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.79  E-value=1.1e-16  Score=163.41  Aligned_cols=240  Identities=25%  Similarity=0.347  Sum_probs=203.6

Q ss_pred             HHHHHhHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Q 005594          158 IVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------R  221 (689)
Q Consensus       158 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~  221 (689)
                      .+...++..|..+|++++|+..++++++.        .|.-......+|.+|..++++.+|+..|++++.+        +
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34666999999999999999999999988        4555566667999999999999999999999975        4


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC----
Q 005594          222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN----  296 (689)
Q Consensus       222 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----  296 (689)
                      |..+.++.+||.+|...|++++|..++++++++... .......++..+..++.++..++++++|..++++++++.    
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            455778999999999999999999999999987543 112233456677888888889999999999999998763    


Q ss_pred             ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 005594          297 ----WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-  363 (689)
Q Consensus       297 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-  363 (689)
                          +..+..+.++|.+|..+|++++|.+++++++.+.        +.....+..+|..+.+.+++.+|.+.|.++..+ 
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence                2335689999999999999999999999999873        334678899999999999999999999998866 


Q ss_pred             ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005594          364 ------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA  397 (689)
Q Consensus       364 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  397 (689)
                            .|+....+.+|+.+|..+|++++|+++.++++..
T Consensus       440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence                  3445668999999999999999999999999854

>PLN02789 farnesyltranstransferase

Probab=99.79  E-value=7.5e-17  Score=158.02  Aligned_cols=210  Identities=12%  Similarity=0.060  Sum_probs=168.6

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhc
Q 005594          201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE  279 (689)
Q Consensus       201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~  279 (689)
                      +...+++++|+..+.++++++|.+..+|...+.++..+| ++++++..++++++.+|++..++...+.++..++.     
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~-----  121 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP-----  121 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc-----
Confidence            344566777788888888888888888888888877777 56788888888888888877777777666655541     


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCH----HH
Q 005594          280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNL----DK  352 (689)
Q Consensus       280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~~  352 (689)
                      ...++++.+++++++.+|++..+|...+.++...|++++|++.+.++++.+|.+..+|+.++.++...   |.+    ++
T Consensus       122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~  201 (320)
T PLN02789        122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS  201 (320)
T ss_pred             hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence            12366788888888888888899999999999999999999999999999999999999988887765   222    57


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005594          353 AVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA  415 (689)
Q Consensus       353 A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  415 (689)
                      ++++..+++.++|++..+|..++.++..    .++..+|++.+.+++...|++..++..|+.+|...
T Consensus       202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence            8888889999999999999999999887    45567798999998888899999999999998763

>PLN02789 farnesyltranstransferase

Probab=99.76  E-value=5.6e-16  Score=151.92  Aligned_cols=210  Identities=11%  Similarity=0.020  Sum_probs=126.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-
Q 005594          130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY-  207 (689)
Q Consensus       130 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~-  207 (689)
                      ++.++|+..+.++++++|++..++..       .+.++...| ++++++..++++++.+|++..+|...+.++...|+. 
T Consensus        51 e~serAL~lt~~aI~lnP~~ytaW~~-------R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~  123 (320)
T PLN02789         51 ERSPRALDLTADVIRLNPGNYTVWHF-------RRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA  123 (320)
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHH-------HHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence            34445555555555555555444222       222222333 345555566666666666666666666555555542 


Q ss_pred             -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHH
Q 005594          208 -DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV  286 (689)
Q Consensus       208 -~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  286 (689)
                       ++++.+++++++.+|.+..+|..++.++...|+++++++.+.++++.+|.+..++...+.++..++.........++++
T Consensus       124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el  203 (320)
T PLN02789        124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL  203 (320)
T ss_pred             hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence             4556666666666666666666666666666666666666666666666666666666555544321100111245677


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005594          287 AYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD  346 (689)
Q Consensus       287 ~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  346 (689)
                      .+..+++..+|++..+|..++.++..    .++..+|+..+.+++...|.++.++..++.++..
T Consensus       204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence            77778888888888888888887776    3445667777777777777777777777777764

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=1.2e-14  Score=134.93  Aligned_cols=385  Identities=16%  Similarity=0.131  Sum_probs=218.1

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCCCH-HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 005594           56 NILRSRNKFVDALALYEIVLEKDSGNV-EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE  134 (689)
Q Consensus        56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  134 (689)
                      .-++.+.+|..|+.+++-.+..+.+.. ..-..+|.|++.+|+|++|+..|+-+.+.+.-+.+.+.+++.+++-.|.|.+
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence            345678899999999988776544333 5667789999999999999999999888777778899999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005594          135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY  214 (689)
Q Consensus       135 A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  214 (689)
                      |.....++    |+++-...    +++.++   .+.++-++-. .|...++   +..+-...++.+.+..-.|++|++.|
T Consensus       110 A~~~~~ka----~k~pL~~R----Llfhla---hklndEk~~~-~fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvY  174 (557)
T KOG3785|consen  110 AKSIAEKA----PKTPLCIR----LLFHLA---HKLNDEKRIL-TFHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVY  174 (557)
T ss_pred             HHHHHhhC----CCChHHHH----HHHHHH---HHhCcHHHHH-HHHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            98776654    44333211    122221   2223322222 2222221   11233455556666666666666666


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh-----------hcCCHH
Q 005594          215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK-----------LEGDIN  283 (689)
Q Consensus       215 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~  283 (689)
                      ++.+..+|+....-..++.+|.++.-++-+.+.+.-.++..|++..+....+..++++-.-..           ....+.
T Consensus       175 krvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~  254 (557)
T KOG3785|consen  175 KRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP  254 (557)
T ss_pred             HHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch
Confidence            666666666666666666666666666666666666666666666555544444433211000           000111


Q ss_pred             HHHHHHHH----------HHhhCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005594          284 QGVAYYKK----------ALYYNWH----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN  349 (689)
Q Consensus       284 ~A~~~~~~----------al~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  349 (689)
                      .+..+++.          +++.-|.    .+++..++...|..+++..+|+...+   .++|..+.-+...|.++...|+
T Consensus       255 f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQ  331 (557)
T KOG3785|consen  255 FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQ  331 (557)
T ss_pred             hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhh
Confidence            12111111          1111121    24566677777777777777766554   3466666666666666666665


Q ss_pred             HHHHHHHHHHHH---hc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 005594          350 LDKAVECYQMAL---SI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL  420 (689)
Q Consensus       350 ~~~A~~~~~~al---~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  420 (689)
                      --...+.++-|-   .+      .-+...-...++.+++-..++++-+.++...-...-++-...+++++++...|++.+
T Consensus       332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~e  411 (557)
T KOG3785|consen  332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVE  411 (557)
T ss_pred             hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHH
Confidence            433333333222   11      111122334455555555666666666665555555555666666666666666666


Q ss_pred             HHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHH
Q 005594          421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE  459 (689)
Q Consensus       421 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (689)
                      |.+.|-+.-..+-.+. .....+++.+|+..+.++-+|+
T Consensus       412 aEelf~~is~~~ikn~-~~Y~s~LArCyi~nkkP~lAW~  449 (557)
T KOG3785|consen  412 AEELFIRISGPEIKNK-ILYKSMLARCYIRNKKPQLAWD  449 (557)
T ss_pred             HHHHHhhhcChhhhhh-HHHHHHHHHHHHhcCCchHHHH
Confidence            6666655543322222 2222345556665555444433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.75  E-value=8.4e-15  Score=150.65  Aligned_cols=210  Identities=17%  Similarity=0.053  Sum_probs=144.4

Q ss_pred             CCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005594           78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE  154 (689)
Q Consensus        78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  154 (689)
                      +|+.+.++..+|..+...|+.+++.+.+.++.+..|.+   .+.....+.++...|++++|...++++++.+|++.....
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~   81 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK   81 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            68888888888888888888888888888887776644   445667788888888888888888888888888765432


Q ss_pred             HHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005594          155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI  234 (689)
Q Consensus       155 ~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  234 (689)
                      . +..+..++   ...+....+.+.+......+|.....+..+|.++..+|++++|+..++++++..|++..++..+|.+
T Consensus        82 ~-~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i  157 (355)
T cd05804          82 L-HLGAFGLG---DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV  157 (355)
T ss_pred             H-hHHHHHhc---ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence            2 11122221   1234444455444443345666677777888888888888888888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh
Q 005594          235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY  294 (689)
Q Consensus       235 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  294 (689)
                      +...|++++|+..+++++...|.....   ....+..++.++...|++++|+..+++++.
T Consensus       158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~---~~~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         158 LEMQGRFKEGIAFMESWRDTWDCSSML---RGHNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             HHHcCCHHHHHHHHHhhhhccCCCcch---hHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            888888888888888888877642211   112233334444444555555555555443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=1.6e-14  Score=134.22  Aligned_cols=361  Identities=13%  Similarity=0.026  Sum_probs=269.4

Q ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005594           49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD  128 (689)
Q Consensus        49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  128 (689)
                      ...+..|.+++..|+|++|+..|+-+.+.+..+.+.+.+++.|++-+|.|.+|...-.+    .|+++-....+-.+..+
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k----a~k~pL~~RLlfhlahk  133 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK----APKTPLCIRLLFHLAHK  133 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHH
Confidence            44567899999999999999999999988777889999999999999999999876655    46777666666666667


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 005594          129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD  208 (689)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  208 (689)
                      .++-++-...-+ .+.-..   +.       ...++.+.+..-.|++|++.|.+++..+|+....-..++.||+++.-|+
T Consensus       134 lndEk~~~~fh~-~LqD~~---Ed-------qLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYyd  202 (557)
T KOG3785|consen  134 LNDEKRILTFHS-SLQDTL---ED-------QLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYD  202 (557)
T ss_pred             hCcHHHHHHHHH-HHhhhH---HH-------HHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhh
Confidence            777555444333 332111   11       4456666777788999999999999999999888899999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------------------Cc-------HHHHh
Q 005594          209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP------------------NF-------EIAKN  263 (689)
Q Consensus       209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------------~~-------~~~~~  263 (689)
                      -+.+.+.-.+...|++.-+...++....+.=+-..|..-.+.......                  +.       +....
T Consensus       203 vsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~  282 (557)
T KOG3785|consen  203 VSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK  282 (557)
T ss_pred             hHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh
Confidence            999999999999999988888887776664332223322222221100                  00       11122


Q ss_pred             hHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hhC------CCCH
Q 005594          264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF---HFN------PHCA  334 (689)
Q Consensus       264 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~------p~~~  334 (689)
                      .+..+-.++...|..+++..+|+.+.+.   ++|..+.-+...|.+....|+--...+.++-+-   .+-      -+..
T Consensus       283 ~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI  359 (557)
T KOG3785|consen  283 HIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI  359 (557)
T ss_pred             hChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc
Confidence            2233445566677889999999988764   689999999999999999887554444444332   221      2233


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Q 005594          335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PTYAEAYNNLGVLYR  413 (689)
Q Consensus       335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~  413 (689)
                      .....++.+++-..++++.+.++...-...-++....++++.++...|++.+|.+.|-+.-... .+.......|++||.
T Consensus       360 pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi  439 (557)
T KOG3785|consen  360 PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYI  439 (557)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHH
Confidence            4556778888888999999999998888888889999999999999999999999997765444 233445567999999


Q ss_pred             HcCCHHHHHHHHHH
Q 005594          414 DAGSISLAIDAYEQ  427 (689)
Q Consensus       414 ~~g~~~~A~~~~~~  427 (689)
                      +.|+.+-|.+.+-+
T Consensus       440 ~nkkP~lAW~~~lk  453 (557)
T KOG3785|consen  440 RNKKPQLAWDMMLK  453 (557)
T ss_pred             hcCCchHHHHHHHh
Confidence            99999999887754

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=1.6e-13  Score=132.36  Aligned_cols=349  Identities=15%  Similarity=0.142  Sum_probs=221.6

Q ss_pred             HHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005594           70 LYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY  149 (689)
Q Consensus        70 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  149 (689)
                      -|+..+..+.-+...|...|.--..++++..|...|+++|..+..+...|...+.+-.+......|...+.+++.+-|.-
T Consensus        61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV  140 (677)
T KOG1915|consen   61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV  140 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence            45555666666778899999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             HHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005594          150 KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC  229 (689)
Q Consensus       150 ~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  229 (689)
                      ...       ++....+-...|+...|.+.|++-++..|+ ..+|......-.+.+..+.|...|++-+-.+|+ ...|.
T Consensus       141 dql-------WyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wi  211 (677)
T KOG1915|consen  141 DQL-------WYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWI  211 (677)
T ss_pred             HHH-------HHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHH
Confidence            665       555555556678888999999998888876 456666666666666777777777776666654 45566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHH----------------------
Q 005594          230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA----------------------  287 (689)
Q Consensus       230 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----------------------  287 (689)
                      ..+..-.+.|+..-|...|+++++...++...-.    .+...+.....++.++.|..                      
T Consensus       212 kyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~----lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~  287 (677)
T KOG1915|consen  212 KYARFEEKHGNVALARSVYERAIEFLGDDEEAEI----LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYT  287 (677)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            6666666666666666666666655443221110    00111111111111111111                      


Q ss_pred             ----------------------HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---------HH
Q 005594          288 ----------------------YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA---------EA  336 (689)
Q Consensus       288 ----------------------~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~  336 (689)
                                            .|++.+..+|-+.++|+..-.+....|+.+.-.+.|++++...|...         ..
T Consensus       288 ~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYL  367 (677)
T KOG1915|consen  288 AFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYL  367 (677)
T ss_pred             HHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHH
Confidence                                  23444444666666666666666666776666677776666554321         11


Q ss_pred             HHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHH---------------------------------H
Q 005594          337 CNNLGV-IYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVV---------------------------------Y  378 (689)
Q Consensus       337 ~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~---------------------------------~  378 (689)
                      |.+.+. .-....+.+.+.+.|+.++++-|..    +..|...|..                                 -
T Consensus       368 WinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelE  447 (677)
T KOG1915|consen  368 WINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELE  447 (677)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence            222211 1123445555555555555554432    2233333333                                 3


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI  431 (689)
Q Consensus       379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  431 (689)
                      .++++++...++|++.++..|.+..+|...|.+-..+|+.+.|...|+-|+..
T Consensus       448 lqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q  500 (677)
T KOG1915|consen  448 LQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ  500 (677)
T ss_pred             HHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence            44555666666666666666666666666666666666666666666666654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.73  E-value=1.5e-14  Score=148.77  Aligned_cols=309  Identities=15%  Similarity=0.076  Sum_probs=229.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 005594          112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA  191 (689)
Q Consensus       112 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  191 (689)
                      +|+.+.++..+|.++...|+.+++...+.++.+..+.+....    ......+..+...|++++|...++++++.+|++.
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~   77 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATER----ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL   77 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence            799999999999999999999999999999998888665432    2244567788899999999999999999999998


Q ss_pred             HHHHHHHHHHHHcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 005594          192 PAYYNLGVVYSELMQY----DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI  267 (689)
Q Consensus       192 ~~~~~la~~~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  267 (689)
                      .++.. +..+...|++    ..+.+.+.......|........+|.++...|++++|+..++++++..|++...+..   
T Consensus        78 ~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~---  153 (355)
T cd05804          78 LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHA---  153 (355)
T ss_pred             HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHH---
Confidence            87775 5555555544    444444444335667778888899999999999999999999999999998655444   


Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHH---
Q 005594          268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA----DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACN---  338 (689)
Q Consensus       268 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~---  338 (689)
                          ++.++...|++++|+.++++++...|..+    ..+..++.++...|++++|+..|++++...|.  ......   
T Consensus       154 ----la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  229 (355)
T cd05804         154 ----VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAA  229 (355)
T ss_pred             ----HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHH
Confidence                44555557899999999999999877433    34668999999999999999999999876662  222111   


Q ss_pred             HHHHHHHHcCCHHHHHHH--H-HHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHH
Q 005594          339 NLGVIYKDRDNLDKAVEC--Y-QMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---------YAEA  404 (689)
Q Consensus       339 ~la~~~~~~g~~~~A~~~--~-~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~  404 (689)
                      .+...+...|....+..+  + .......+.  ........+.++...|+.++|...++........         ...+
T Consensus       230 ~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~  309 (355)
T cd05804         230 SLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGL  309 (355)
T ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhH
Confidence            222233334433333222  1 111111121  2233346888888999999999999887664322         2456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594          405 YNNLGVLYRDAGSISLAIDAYEQCLKID  432 (689)
Q Consensus       405 ~~~la~~~~~~g~~~~A~~~~~~al~~~  432 (689)
                      ....+.++...|++++|.+.+..++.+-
T Consensus       310 ~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         310 PLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999765

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.71  E-value=4.1e-14  Score=152.31  Aligned_cols=161  Identities=12%  Similarity=0.056  Sum_probs=148.5

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594          283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS  362 (689)
Q Consensus       283 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  362 (689)
                      .+++.-........|.+.+++.+||.+....|.+++|...++.++++.|++..++.+++.++.+.+++++|+..+++++.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~  148 (694)
T PRK15179         69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS  148 (694)
T ss_pred             HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence            34444444445567889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhH
Q 005594          363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR  442 (689)
Q Consensus       363 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  442 (689)
                      .+|+++.+++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-.....++
T Consensus       149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~  228 (694)
T PRK15179        149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR  228 (694)
T ss_pred             cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988776665555


Q ss_pred             H
Q 005594          443 L  443 (689)
Q Consensus       443 ~  443 (689)
                      +
T Consensus       229 ~  229 (694)
T PRK15179        229 L  229 (694)
T ss_pred             H
Confidence            4

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.69  E-value=5.4e-15  Score=142.05  Aligned_cols=191  Identities=14%  Similarity=0.115  Sum_probs=158.4

Q ss_pred             ccccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH---HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHH-
Q 005594           42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC-  117 (689)
Q Consensus        42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-  117 (689)
                      +.....++.++.+|..++..|++++|+..|+++++.+|+++   .+++.+|.++...|++++|+..|+++++..|+++. 
T Consensus        27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  106 (235)
T TIGR03302        27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA  106 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence            45567888999999999999999999999999999999876   68899999999999999999999999999998776 


Q ss_pred             --HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC
Q 005594          118 --AHTHCGILYKDE--------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID  187 (689)
Q Consensus       118 --~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  187 (689)
                        +++.+|.++...        |++++|++.+++++..+|++......+    ..++....       .           
T Consensus       107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~----~~~~~~~~-------~-----------  164 (235)
T TIGR03302       107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK----KRMDYLRN-------R-----------  164 (235)
T ss_pred             HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH----HHHHHHHH-------H-----------
Confidence              789999999876        889999999999999999986653222    11111110       0           


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594          188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSP  256 (689)
Q Consensus       188 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  256 (689)
                        .......+|.++...|++.+|+..++++++..|+   .+.+++.+|.++...|++++|..+++.+....|
T Consensus       165 --~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       165 --LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             --HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence              0123457888899999999999999999988665   457899999999999999999998888776655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.68  E-value=1.3e-12  Score=124.33  Aligned_cols=298  Identities=14%  Similarity=0.058  Sum_probs=203.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Q 005594          123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVY  201 (689)
Q Consensus       123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~  201 (689)
                      |..-...|+|.+|.+...+.-+..+...-+       +..-+....+.|+.+.+-.++.++-+..++ ...+....+.+.
T Consensus        91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~-------~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll  163 (400)
T COG3071          91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLA-------YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL  163 (400)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhhcCcchHHH-------HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence            344455667777777666655554443222       444455556667777777777776666322 345556666777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-HHHhhHHHHHHHhhhhhhhcC
Q 005594          202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKVKLEG  280 (689)
Q Consensus       202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~l~~~~~~~~  280 (689)
                      ...|++..|.....++++..|.++.+......+|...|++.+...++.+.-+..--+. +....--.++..+-+-....+
T Consensus       164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~  243 (400)
T COG3071         164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN  243 (400)
T ss_pred             HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence            7777777777777777777777777777777777777777777776666554432211 111111111111111111111


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA  360 (689)
Q Consensus       281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  360 (689)
                      ..+.-..+++..-..-..++.....++.-+...|+.++|.+..+.+++..-+.. ....++  ...-++...=++..++.
T Consensus       244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~  320 (400)
T COG3071         244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKW  320 (400)
T ss_pred             cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHH
Confidence            222222344444444445678888999999999999999999999998865433 222222  24567889999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI  431 (689)
Q Consensus       361 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  431 (689)
                      ++..|+++..+..||.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|.+.+++++.+
T Consensus       321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999887 778899999999999999999999999854

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.67  E-value=9.9e-13  Score=136.52  Aligned_cols=248  Identities=16%  Similarity=0.093  Sum_probs=153.2

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK  127 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  127 (689)
                      .+.++-.+.++...|++++|++.+++....-.+....+-.+|.++..+|++++|...|...++.+|++...+..+..+..
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g   83 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG   83 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence            46678889999999999999999999888888889999999999999999999999999999999999999988888873


Q ss_pred             HcC-----CHHHHHHHHHHHHhcCCCCHHHHH------------HHHH-------------HHHHhHHHHHHcCChHHHH
Q 005594          128 DEG-----RLVEAAESYHKALSADPSYKPAAE------------CLAI-------------VLTDLGTSLKLAGNTQDGI  177 (689)
Q Consensus       128 ~~g-----~~~~A~~~~~~al~~~p~~~~~~~------------~~a~-------------~~~~l~~~~~~~~~~~~A~  177 (689)
                      ...     +.+.-...|++.....|.......            ..+.             ++..+-..|....+..-..
T Consensus        84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~  163 (517)
T PF12569_consen   84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE  163 (517)
T ss_pred             hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence            332     456667777777666665321100            0000             0111111111111111111


Q ss_pred             HHHHHHHhh---------------CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005594          178 QKYYEALKI---------------DPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD  240 (689)
Q Consensus       178 ~~~~~al~~---------------~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  240 (689)
                      .++......               .|..  ..+++.+++.|...|++++|+++++++++..|..++.+...|.++...|+
T Consensus       164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~  243 (517)
T PF12569_consen  164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD  243 (517)
T ss_pred             HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence            111111110               0000  12345555555556666666666666666666656666666666666666


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHh------------------------------------hHHHHHHHhhhhhhhcCCHHH
Q 005594          241 LESAIACYERCLAVSPNFEIAKN------------------------------------NMAIALTDLGTKVKLEGDINQ  284 (689)
Q Consensus       241 ~~~A~~~~~~al~~~~~~~~~~~------------------------------------~~~~~~~~l~~~~~~~~~~~~  284 (689)
                      +.+|.+.++.+..++..+.....                                    .........|..+.+.|++..
T Consensus       244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~  323 (517)
T PF12569_consen  244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL  323 (517)
T ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            66666655555555443322111                                    222334556677777888888


Q ss_pred             HHHHHHHHHhh
Q 005594          285 GVAYYKKALYY  295 (689)
Q Consensus       285 A~~~~~~al~~  295 (689)
                      |+..|..+.+.
T Consensus       324 ALk~~~~v~k~  334 (517)
T PF12569_consen  324 ALKRFHAVLKH  334 (517)
T ss_pred             HHHHHHHHHHH
Confidence            88887777655

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1e-12  Score=130.62  Aligned_cols=207  Identities=15%  Similarity=0.088  Sum_probs=166.0

Q ss_pred             HHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 005594           84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL  163 (689)
Q Consensus        84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l  163 (689)
                      .++.--..+...++|++|.+...+++...|++..+....-.++.+.++|++|+...++-......+.        ..+..
T Consensus        14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~--------~~fEK   85 (652)
T KOG2376|consen   14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS--------FFFEK   85 (652)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch--------hhHHH
Confidence            3444444566789999999999999999999999999999999999999999965554332111111        12577


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------
Q 005594          164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER----------------------  221 (689)
Q Consensus       164 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------------  221 (689)
                      +.|.++.+..++|+..++   ..++.+..+....|++++++|+|++|+..|+..++.+                      
T Consensus        86 AYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~  162 (652)
T KOG2376|consen   86 AYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ  162 (652)
T ss_pred             HHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence            888999999999999998   4566667788899999999999999999999985422                      


Q ss_pred             --------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHhhHHHHHHHhhhhhhhcCCHHH
Q 005594          222 --------P-MYAEAYCNMGVIYKNRGDLESAIACYERCLAV--------SPNFEIAKNNMAIALTDLGTKVKLEGDINQ  284 (689)
Q Consensus       222 --------p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  284 (689)
                              | ++.+.+++.+.++...|+|.+|++.+++++.+        +.+..+....+..+...++.++...|+.++
T Consensus       163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e  242 (652)
T KOG2376|consen  163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE  242 (652)
T ss_pred             HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence                    1 24567899999999999999999999999543        233355666777788888888999999999


Q ss_pred             HHHHHHHHHhhCCCCHH
Q 005594          285 GVAYYKKALYYNWHYAD  301 (689)
Q Consensus       285 A~~~~~~al~~~~~~~~  301 (689)
                      |..+|...++.++.+..
T Consensus       243 a~~iy~~~i~~~~~D~~  259 (652)
T KOG2376|consen  243 ASSIYVDIIKRNPADEP  259 (652)
T ss_pred             HHHHHHHHHHhcCCCch
Confidence            99999999998877653

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.66  E-value=4.6e-15  Score=140.33  Aligned_cols=293  Identities=22%  Similarity=0.274  Sum_probs=189.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh------CCCCHHHHH
Q 005594          122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYY  195 (689)
Q Consensus       122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~  195 (689)
                      -|.-++++|+....+..|+.+++...++...   +..+|..+|..|+..++|++|+++...-+.+      .-..+..--
T Consensus        23 EGERLck~gdcraGv~ff~aA~qvGTeDl~t---LSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg   99 (639)
T KOG1130|consen   23 EGERLCKMGDCRAGVDFFKAALQVGTEDLST---LSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG   99 (639)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHhcchHHHH---HHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence            3566778888888888888888887665443   5667888888888888888888875443322      222345566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHH
Q 005594          196 NLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGD--------------------LESAIACYE  249 (689)
Q Consensus       196 ~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~  249 (689)
                      +||..+.-+|.|++|+.+..+-+.+..      ....+++++|.+|...|+                    ++.|.++|.
T Consensus       100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~  179 (639)
T KOG1130|consen  100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM  179 (639)
T ss_pred             cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence            788889999999999888877765432      246788899999888764                    233444444


Q ss_pred             HHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 005594          250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFY  323 (689)
Q Consensus       250 ~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~  323 (689)
                      .-+++..+.. .....+.++-++|+.|...|+++.|+..-+.-+.+....      -.++.++|.++.-.|+++.|+++|
T Consensus       180 eNL~l~~~lg-Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY  258 (639)
T KOG1130|consen  180 ENLELSEKLG-DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY  258 (639)
T ss_pred             HHHHHHHHhh-hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence            4444433222 223345667777777777788888877776666554332      236667777777777777777777


Q ss_pred             HHHHhhC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 005594          324 ELAFHFN----P--HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQSLNNLGVVYTVQGKMDAAAEMI  391 (689)
Q Consensus       324 ~~al~~~----p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~  391 (689)
                      ++.+.+.    .  ..+...+.+|..|.-..++++|+.++++-+.+..+      ...+++.||..+...|..++|+.+.
T Consensus       259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa  338 (639)
T KOG1130|consen  259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA  338 (639)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            7665441    1  12445566777777777777777777766655322      2346666777777777777777666


Q ss_pred             HHHHHhC-----CC-cHHHHHHHHHHHHHcCCH
Q 005594          392 EKAIAAN-----PT-YAEAYNNLGVLYRDAGSI  418 (689)
Q Consensus       392 ~~al~~~-----p~-~~~~~~~la~~~~~~g~~  418 (689)
                      ++.+++.     +. ...+..++...-..+|..
T Consensus       339 e~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~  371 (639)
T KOG1130|consen  339 ELHLRSSLEVNDTSGELTARDNLSDLILELGQE  371 (639)
T ss_pred             HHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence            6665542     11 233445555555555543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.64  E-value=5.2e-12  Score=120.40  Aligned_cols=297  Identities=14%  Similarity=0.015  Sum_probs=194.9

Q ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Q 005594           47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-NACAHTHCGIL  125 (689)
Q Consensus        47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~  125 (689)
                      .+......|..-+..|+|.+|.+...+.-+..+....++..-+.+.-++|+++.|-.++.++-+..++ .......++.+
T Consensus        83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl  162 (400)
T COG3071          83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL  162 (400)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence            35566677888888999999999999988877777788888899999999999999999999998444 45678889999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHH---HHHHHHH--H
Q 005594          126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP---AYYNLGV--V  200 (689)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~--~  200 (689)
                      ....|+++.|..-..++++..|.++..       +.....+|...|++.+...++.+.-+..--+.+   -+-+.+.  +
T Consensus       163 ll~~~d~~aA~~~v~~ll~~~pr~~~v-------lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl  235 (400)
T COG3071         163 LLNRRDYPAARENVDQLLEMTPRHPEV-------LRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL  235 (400)
T ss_pred             HHhCCCchhHHHHHHHHHHhCcCChHH-------HHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence            999999999999999999999999887       555566777889999999988887765432221   1111111  1


Q ss_pred             HHHcCCHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh
Q 005594          201 YSELMQYDTA---LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK  277 (689)
Q Consensus       201 ~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~  277 (689)
                      +.+.++-..+   ..+.+..-..-..++.....++.-+...|+.++|.+..+.+++..-+..     +...+-.     .
T Consensus       236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----L~~~~~~-----l  305 (400)
T COG3071         236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-----LCRLIPR-----L  305 (400)
T ss_pred             HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----HHHHHhh-----c
Confidence            1122222222   2233333333345577777788888888888888888888887654432     1111111     1


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005594          278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY  357 (689)
Q Consensus       278 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  357 (689)
                      .-++...-++..++.++..|+++..+..+|.++.+.+.|.+|..+++.+++..|+ ...+..+|.++.++|+..+|.+.+
T Consensus       306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r  384 (400)
T COG3071         306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVR  384 (400)
T ss_pred             CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHH
Confidence            1344445555555555555555555555555555555555555555555544443 334444555555555555555555


Q ss_pred             HHHH
Q 005594          358 QMAL  361 (689)
Q Consensus       358 ~~al  361 (689)
                      ++++
T Consensus       385 ~e~L  388 (400)
T COG3071         385 REAL  388 (400)
T ss_pred             HHHH
Confidence            5444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.63  E-value=1.7e-13  Score=148.16  Aligned_cols=290  Identities=13%  Similarity=0.089  Sum_probs=226.1

Q ss_pred             hCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005594           77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL  156 (689)
Q Consensus        77 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  156 (689)
                      .+|.+..++..+...+...+++++|++.++.+++..|+...+++.+|.++.+.+++.++...  .++...+.+       
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~-------   96 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN-------   96 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc-------
Confidence            47888999999999999999999999999999999999999999999999999998877766  555554443       


Q ss_pred             HHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005594          157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK  236 (689)
Q Consensus       157 a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  236 (689)
                                    .++ .+++++...+...+.+..+++.+|.||-++|+.++|...++++++.+|+++.++.++|..|.
T Consensus        97 --------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a  161 (906)
T PRK14720         97 --------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE  161 (906)
T ss_pred             --------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence                          334 55566666666678888899999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH
Q 005594          237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF  316 (689)
Q Consensus       237 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  316 (689)
                      .. +.++|++++.+++..                     +...+++.++.+++.+.+..+|.+.+.+..+-......-.+
T Consensus       162 e~-dL~KA~~m~~KAV~~---------------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~  219 (906)
T PRK14720        162 EE-DKEKAITYLKKAIYR---------------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREF  219 (906)
T ss_pred             Hh-hHHHHHHHHHHHHHH---------------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhcc
Confidence            99 999999999999865                     12245889999999999999998877655443332222112


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005594          317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA  396 (689)
Q Consensus       317 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  396 (689)
                      ..+              ...+.-+-..|...++|++++.+++.+++.+|.+..+...++.+|.  +.|.. ...++..++
T Consensus       220 ~~~--------------~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~  282 (906)
T PRK14720        220 TRL--------------VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLK  282 (906)
T ss_pred             chh--------------HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHH
Confidence            222              3445556677788889999999999999999999999999999887  33333 444444444


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHh
Q 005594          397 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ  440 (689)
Q Consensus       397 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  440 (689)
                      +.           .+-....++..|+..|++.+..++.+--.+.
T Consensus       283 ~s-----------~l~~~~~~~~~~i~~fek~i~f~~G~yv~H~  315 (906)
T PRK14720        283 MS-----------DIGNNRKPVKDCIADFEKNIVFDTGNFVYHR  315 (906)
T ss_pred             Hh-----------ccccCCccHHHHHHHHHHHeeecCCCEEEEc
Confidence            32           2222224668889999999988887755443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.63  E-value=8.6e-15  Score=127.11  Aligned_cols=120  Identities=14%  Similarity=0.164  Sum_probs=76.4

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594          321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT  400 (689)
Q Consensus       321 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  400 (689)
                      ..++++++.+|++   +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|+++++++|+
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            4455556655553   4455666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHH
Q 005594          401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL  443 (689)
Q Consensus       401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  443 (689)
                      ++.+++++|.++..+|++++|+..|++++++.|+++..+.++.
T Consensus        91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~  133 (144)
T PRK15359         91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ  133 (144)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            6666666666666666666666666666666666666555443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.63  E-value=3.2e-12  Score=148.49  Aligned_cols=385  Identities=12%  Similarity=-0.014  Sum_probs=274.9

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHc
Q 005594           51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV-KLDPQNACAHTHCGILYKDE  129 (689)
Q Consensus        51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~  129 (689)
                      ....|..+...|++.+|+..+..+-.. +.-.......+..+...|++..+...+..+- .....++......+.++...
T Consensus       344 h~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~  422 (903)
T PRK04841        344 HRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ  422 (903)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence            345567788899999988766554111 1112345556777778888887777665431 11123445567778888999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHH
Q 005594          130 GRLVEAAESYHKALSADPSYK--PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVYS  202 (689)
Q Consensus       130 g~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~  202 (689)
                      |++++|...+..+....+...  ......+.+...++.++...|++++|...+++++...+..     ..+...+|.++.
T Consensus       423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~  502 (903)
T PRK04841        423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH  502 (903)
T ss_pred             CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence            999999999998876533211  0111123445557888899999999999999999854432     235677899999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHhhHHHHHHHhhhh
Q 005594          203 ELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTK  275 (689)
Q Consensus       203 ~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~l~~~  275 (689)
                      ..|++++|...+++++.....      ...++..+|.++...|++++|...+++++........ ........+..++.+
T Consensus       503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  582 (903)
T PRK04841        503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL  582 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence            999999999999999875332      1346678899999999999999999999886432110 001112234456777


Q ss_pred             hhhcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHH----HHHHHH
Q 005594          276 VKLEGDINQGVAYYKKALYYNWH-----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEAC----NNLGVI  343 (689)
Q Consensus       276 ~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~----~~la~~  343 (689)
                      +...|++++|...+.+++.....     ....+..++.++...|++++|...+.++..+....   ....    ......
T Consensus       583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  662 (903)
T PRK04841        583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY  662 (903)
T ss_pred             HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence            77889999999999999875332     24456778999999999999999999997763321   1111    112344


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHH
Q 005594          344 YKDRDNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYR  413 (689)
Q Consensus       344 ~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~  413 (689)
                      +...|+.+.|..++.......+....    .+..++.++...|++++|...+++++....      ....++..+|.++.
T Consensus       663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~  742 (903)
T PRK04841        663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW  742 (903)
T ss_pred             HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            55689999999998776653322221    256889999999999999999999988621      23567889999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCh
Q 005594          414 DAGSISLAIDAYEQCLKIDPDSR  436 (689)
Q Consensus       414 ~~g~~~~A~~~~~~al~~~p~~~  436 (689)
                      ..|+.++|...+++++++.....
T Consensus       743 ~~G~~~~A~~~L~~Al~la~~~g  765 (903)
T PRK04841        743 QQGRKSEAQRVLLEALKLANRTG  765 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHhCccc
Confidence            99999999999999999876543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.62  E-value=7.4e-14  Score=134.18  Aligned_cols=182  Identities=16%  Similarity=0.072  Sum_probs=145.9

Q ss_pred             hCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005594           77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA  153 (689)
Q Consensus        77 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  153 (689)
                      .++..+..++.+|..++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..++++++..|++....
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  107 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD  107 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence            3455788999999999999999999999999999999876   5789999999999999999999999999999877642


Q ss_pred             HHHHHHHHHhHHHHHHc--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005594          154 ECLAIVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA  225 (689)
Q Consensus       154 ~~~a~~~~~l~~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  225 (689)
                          .+++.+|.++...        |++++|++.+++++..+|++..++..+..+....+    .             ..
T Consensus       108 ----~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~  166 (235)
T TIGR03302       108 ----YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LA  166 (235)
T ss_pred             ----HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HH
Confidence                2356666666654        78999999999999999998766543332221110    0             01


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHhhHHHHHHHhhhhhhhc
Q 005594          226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNF---EIAKNNMAIALTDLGTKVKLE  279 (689)
Q Consensus       226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~l~~~~~~~  279 (689)
                      .....+|.++...|++.+|+..++++++..|+.   ..++..++.++..+|+.....
T Consensus       167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~  223 (235)
T TIGR03302       167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ  223 (235)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence            234578899999999999999999999997764   578889999999988764433

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.62  E-value=1.5e-14  Score=125.67  Aligned_cols=127  Identities=17%  Similarity=0.107  Sum_probs=119.8

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594          286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP  365 (689)
Q Consensus       286 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  365 (689)
                      ...++++++.+|++   +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46788899988874   667899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005594          366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA  415 (689)
Q Consensus       366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  415 (689)
                      +++.+++++|.++...|++++|+..|++++++.|+++..+.+++.+...+
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998876554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.62  E-value=1.2e-14  Score=137.68  Aligned_cols=270  Identities=24%  Similarity=0.302  Sum_probs=210.9

Q ss_pred             HHhHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHH
Q 005594          161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCN  230 (689)
Q Consensus       161 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~  230 (689)
                      ..-|.-+.+.|+....+..|+.+++...++    ..+|..||.+|+.+++|++|+++-..-+.+      .-..+...-+
T Consensus        21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN  100 (639)
T KOG1130|consen   21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN  100 (639)
T ss_pred             HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence            345677888999999999999999997776    346788999999999999999986543332      2334566778


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCC--------------------HHHHHHHHH
Q 005594          231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD--------------------INQGVAYYK  290 (689)
Q Consensus       231 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~  290 (689)
                      +|.++.-+|.|++|+.+..+-+.+..... .....+.+++++|.+|...|+                    ++.|.++|.
T Consensus       101 LGNtlKv~G~fdeA~~cc~rhLd~areLg-Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~  179 (639)
T KOG1130|consen  101 LGNTLKVKGAFDEALTCCFRHLDFARELG-DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM  179 (639)
T ss_pred             ccchhhhhcccchHHHHHHHHhHHHHHHh-HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence            99999999999999999988877654322 233446677777777766553                    345666666


Q ss_pred             HHHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594          291 KALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQ  358 (689)
Q Consensus       291 ~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~  358 (689)
                      .-+++....      ..++-++|..|+-+|+|+.|+..-+.-+.+...      .-.++.++|.++.-.|+++.|+++|+
T Consensus       180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK  259 (639)
T KOG1130|consen  180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK  259 (639)
T ss_pred             HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence            666554332      346788999999999999999998877766332      24688999999999999999999999


Q ss_pred             HHHhcC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594          359 MALSIK----P--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYE  426 (689)
Q Consensus       359 ~al~~~----p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~  426 (689)
                      +.+.+.    .  ..+...+.||..|.-..++++|+.++++-+.+..      ....+++.||..+..+|..++|+.+.+
T Consensus       260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae  339 (639)
T KOG1130|consen  260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE  339 (639)
T ss_pred             HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            987652    2  2355788999999999999999999999877632      336789999999999999999999988


Q ss_pred             HHHhc
Q 005594          427 QCLKI  431 (689)
Q Consensus       427 ~al~~  431 (689)
                      +.+++
T Consensus       340 ~hl~~  344 (639)
T KOG1130|consen  340 LHLRS  344 (639)
T ss_pred             HHHHH
Confidence            88765

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=3.1e-12  Score=116.44  Aligned_cols=364  Identities=16%  Similarity=0.127  Sum_probs=242.6

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 005594           55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE  134 (689)
Q Consensus        55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  134 (689)
                      ...+.+..+|..|++++..-.+.+|.+...+..+|.||+...++..|.++|++.-...|......+..+..+++.+.+.+
T Consensus        17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD   96 (459)
T KOG4340|consen   17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD   96 (459)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence            34457889999999999999999999999999999999999999999999999999999998888889999999999999


Q ss_pred             HHHHHHHHHhc----------------CCCCH-HH---H-----HHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005594          135 AAESYHKALSA----------------DPSYK-PA---A-----ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH  189 (689)
Q Consensus       135 A~~~~~~al~~----------------~p~~~-~~---~-----~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  189 (689)
                      |+.....+...                ..++. ..   .     ..-+....+.|.+.++.|+++.|++-|+.+++...-
T Consensus        97 ALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy  176 (459)
T KOG4340|consen   97 ALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY  176 (459)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence            98876554331                11100 00   0     001223556777788888888999989888888888


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------------------------HHHHHHHHHHHHHcCC
Q 005594          190 YAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMY-------------------------AEAYCNMGVIYKNRGD  240 (689)
Q Consensus       190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~-------------------------~~~~~~la~~~~~~g~  240 (689)
                      ++..-++++.++++.++++.|+++....++.    .|..                         .+++...+-++++.++
T Consensus       177 qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n  256 (459)
T KOG4340|consen  177 QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRN  256 (459)
T ss_pred             CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhccc
Confidence            8888888888888888988888887777653    3321                         2456666778888888


Q ss_pred             HHHHHHHHHHHHhcCCC--cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHH
Q 005594          241 LESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM  318 (689)
Q Consensus       241 ~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  318 (689)
                      ++.|.+.+...--....  ++....+++.  .+      ..+++.+...-+.-.+.++|--.+...++-.+|.+..-|+-
T Consensus       257 ~eAA~eaLtDmPPRaE~elDPvTLHN~Al--~n------~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~l  328 (459)
T KOG4340|consen  257 YEAAQEALTDMPPRAEEELDPVTLHNQAL--MN------MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDL  328 (459)
T ss_pred             HHHHHHHhhcCCCcccccCCchhhhHHHH--hc------ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhH
Confidence            88887765433211111  2222222222  11      13567777777777888888777888888888888877777


Q ss_pred             HHHHHHHHHhhCCCC-----HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHH--c---CCHHH
Q 005594          319 AIVFYELAFHFNPHC-----AEACNNLGVIY-KDRDNLDKAVECYQMALSIKPNFSQSLNNLG-VVYTV--Q---GKMDA  386 (689)
Q Consensus       319 A~~~~~~al~~~p~~-----~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~--~---g~~~~  386 (689)
                      |...+-+    +|+.     ....+.+-..+ ...-..++|.+-+.+.-+.-   .+-+..++ .+...  .   ....+
T Consensus       329 AADvLAE----n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe~r~~~dd~a~R~  401 (459)
T KOG4340|consen  329 AADVLAE----NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQEARHNRDDEAIRK  401 (459)
T ss_pred             HHHHHhh----CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccHHHHHH
Confidence            7665533    3332     12222222222 22335555555444332211   11111111 11111  1   11334


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005594          387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR  436 (689)
Q Consensus       387 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  436 (689)
                      |++.|++++++.   ..+....+++|....++..+.+.|++..+...++.
T Consensus       402 ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd  448 (459)
T KOG4340|consen  402 AVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHD  448 (459)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhcccc
Confidence            555666666552   44677888999999999999999999988776654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.60  E-value=5.9e-12  Score=130.82  Aligned_cols=312  Identities=12%  Similarity=0.029  Sum_probs=221.2

Q ss_pred             CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005594           81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL  160 (689)
Q Consensus        81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~  160 (689)
                      +.+.+.....++...|++++|++.+++....-.+....+...|.++..+|++++|...|...++.+|++...+..+..+.
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            45778889999999999999999999998888999999999999999999999999999999999999988755544433


Q ss_pred             HHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005594          161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT-ALGCYEKAALERPMYAEAYCNMGVIYKNRG  239 (689)
Q Consensus       161 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g  239 (689)
                      ....  -....+.+.-...|++.....|...... .+...+..-..+.. +..++...+.  ..-|.....+-.+|....
T Consensus        83 g~~~--~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~--KgvPslF~~lk~Ly~d~~  157 (517)
T PF12569_consen   83 GLQL--QLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLR--KGVPSLFSNLKPLYKDPE  157 (517)
T ss_pred             hhhc--ccccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHcChh
Confidence            2111  0112356777888888877777643332 22222222223333 3334444443  345566666666666444


Q ss_pred             CHHHHHHHHHHHHhc---CCC----c---HHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005594          240 DLESAIACYERCLAV---SPN----F---EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA  309 (689)
Q Consensus       240 ~~~~A~~~~~~al~~---~~~----~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  309 (689)
                      +..-...++......   ...    .   ......+..+++-++..+...|++++|+++++++++..|..++.+...|.+
T Consensus       158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kari  237 (517)
T PF12569_consen  158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARI  237 (517)
T ss_pred             HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            433333333333221   100    0   011122344566677777778899999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C-------HHHHHHHHHHHHH
Q 005594          310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--F-------SQSLNNLGVVYTV  380 (689)
Q Consensus       310 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~  380 (689)
                      +...|++.+|...++.+-.++..+-.+....+..+++.|+.++|.+.+....+.+-+  .       .......|.+|.+
T Consensus       238 lKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r  317 (517)
T PF12569_consen  238 LKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR  317 (517)
T ss_pred             HHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888888888888889999999999888777654421  1       1233456888889


Q ss_pred             cCCHHHHHHHHHHHHHh
Q 005594          381 QGKMDAAAEMIEKAIAA  397 (689)
Q Consensus       381 ~g~~~~A~~~~~~al~~  397 (689)
                      .|++..|++.|..+.+.
T Consensus       318 ~~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  318 QGDYGLALKRFHAVLKH  334 (517)
T ss_pred             HhhHHHHHHHHHHHHHH
Confidence            99999999888888765

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.58  E-value=1.3e-13  Score=126.54  Aligned_cols=153  Identities=20%  Similarity=0.205  Sum_probs=130.9

Q ss_pred             hhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005594          274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA  353 (689)
Q Consensus       274 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  353 (689)
                      -.|...|+++......++..  +|..         -+...++.++++..++++++.+|++.+.|..+|.++...|++++|
T Consensus        24 ~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A   92 (198)
T PRK10370         24 GSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNA   92 (198)
T ss_pred             HHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            34556777777654443221  1110         112367789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594          354 VECYQMALSIKPNFSQSLNNLGVVY-TVQGK--MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK  430 (689)
Q Consensus       354 ~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  430 (689)
                      +..|+++++++|+++.++..+|.++ ...|+  +++|.+.++++++.+|++..+++.+|..+...|++++|+.+|+++++
T Consensus        93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370         93 LLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999999999999999999999975 67787  59999999999999999999999999999999999999999999999


Q ss_pred             cCCCChh
Q 005594          431 IDPDSRN  437 (689)
Q Consensus       431 ~~p~~~~  437 (689)
                      ++|.+.+
T Consensus       173 l~~~~~~  179 (198)
T PRK10370        173 LNSPRVN  179 (198)
T ss_pred             hCCCCcc
Confidence            9988653

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=1e-12  Score=117.28  Aligned_cols=173  Identities=17%  Similarity=0.123  Sum_probs=161.4

Q ss_pred             hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594          277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC  356 (689)
Q Consensus       277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  356 (689)
                      ...++..-|..++++.....|.+.......|..+...|++++|+++|+..++.+|.+...+...-.+...+|+.-+|++.
T Consensus        63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~  142 (289)
T KOG3060|consen   63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE  142 (289)
T ss_pred             HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999888899999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCC
Q 005594          357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG---SISLAIDAYEQCLKIDP  433 (689)
Q Consensus       357 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p  433 (689)
                      +...++..+.+.++|..++.+|...|++++|.-++++.+-+.|.++..+..+|.+++-+|   +.+-|.++|.++++++|
T Consensus       143 ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  143 LNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            999999999999999999999999999999999999999999999999999999998877   56789999999999999


Q ss_pred             CChhhHhhHHHHhhhc
Q 005594          434 DSRNAGQNRLLAMNYI  449 (689)
Q Consensus       434 ~~~~~~~~~~~~~~~~  449 (689)
                      .+..++....++...+
T Consensus       223 ~~~ral~GI~lc~~~l  238 (289)
T KOG3060|consen  223 KNLRALFGIYLCGSAL  238 (289)
T ss_pred             HhHHHHHHHHHHHHHH
Confidence            8888888877665554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.55  E-value=3.2e-11  Score=140.23  Aligned_cols=348  Identities=13%  Similarity=-0.019  Sum_probs=255.8

Q ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCC---------CHHH
Q 005594           49 KDALSYANILRSRNKFVDALALYEIVLE-KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---------NACA  118 (689)
Q Consensus        49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~  118 (689)
                      ..+...+..+...|++..+..+++.+-. ....++......+.++...|++++|...+.++....+.         ....
T Consensus       375 ~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~  454 (903)
T PRK04841        375 DILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEF  454 (903)
T ss_pred             HHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHH
Confidence            3445567777788888887777655411 11234455677888889999999999999988764321         1234


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC------CHH
Q 005594          119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------YAP  192 (689)
Q Consensus       119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~  192 (689)
                      ...++.++...|++++|...+++++...+....  ...+.....+|..+...|++++|...+++++.....      ...
T Consensus       455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~  532 (903)
T PRK04841        455 NALRAQVAINDGDPEEAERLAELALAELPLTWY--YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW  532 (903)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence            556788889999999999999999986554322  223344677888999999999999999999876332      134


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhh
Q 005594          193 AYYNLGVVYSELMQYDTALGCYEKAALERPM--------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN  264 (689)
Q Consensus       193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  264 (689)
                      ++..+|.++...|++++|...+++++.....        ....+..+|.++...|++++|...+.+++.........  .
T Consensus       533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~--~  610 (903)
T PRK04841        533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ--Q  610 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch--H
Confidence            5678899999999999999999999875221        23345678899999999999999999998865432211  1


Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC---HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---
Q 005594          265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---ADAM----YNLGVAYGEMLKFDMAIVFYELAFHFNPHCA---  334 (689)
Q Consensus       265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---  334 (689)
                      ....+..++.++...|++++|...+.++.......   ....    ......+...|+.+.|...+.......+...   
T Consensus       611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~  690 (903)
T PRK04841        611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL  690 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence            23455667888888999999999999997653322   1111    1123445568899999999877665332222   


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594          335 -EACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT  400 (689)
Q Consensus       335 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  400 (689)
                       ..+..++.++...|++++|...+++++....      ....++..+|.++...|+.++|...+.+++++...
T Consensus       691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence             2256789999999999999999999987632      22457888999999999999999999999998654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.54  E-value=9.9e-13  Score=120.62  Aligned_cols=124  Identities=18%  Similarity=0.149  Sum_probs=116.5

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 005594          279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDN--LDKAVE  355 (689)
Q Consensus       279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~  355 (689)
                      .++.++++..++++++.+|++.+.|..+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+  +++|.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            457789999999999999999999999999999999999999999999999999999999999975 67777  599999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 005594          356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA  402 (689)
Q Consensus       356 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  402 (689)
                      .++++++.+|++..++..+|..+.+.|++++|+.++++++++.|.+.
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            99999999999999999999999999999999999999999988654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.53  E-value=6e-10  Score=112.14  Aligned_cols=379  Identities=13%  Similarity=0.145  Sum_probs=213.2

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL  125 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  125 (689)
                      +..|+...+.+..+|+...-...|.++|..-|-  +..+|-..-......+-.+-++..|++.++..|...+   .....
T Consensus       102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~e---eyie~  178 (835)
T KOG2047|consen  102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEARE---EYIEY  178 (835)
T ss_pred             CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHH---HHHHH
Confidence            566778888889999999999999999988763  4455555555566777788899999999999887643   33455


Q ss_pred             HHHcCCHHHHHHHHHHHHhcC-------CCCHHHH-------------------------------HHHHHHHHHhHHHH
Q 005594          126 YKDEGRLVEAAESYHKALSAD-------PSYKPAA-------------------------------ECLAIVLTDLGTSL  167 (689)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~-------p~~~~~~-------------------------------~~~a~~~~~l~~~~  167 (689)
                      +...++.++|.+.+...+..+       +.+...+                               ..++.++..|+..|
T Consensus       179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY  258 (835)
T KOG2047|consen  179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY  258 (835)
T ss_pred             HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence            677888888888887766431       1111111                               12345677899999


Q ss_pred             HHcCChHHHHHHHHHHHhhCCC---CHHHHH-----HHHHHHHHcC-------------CHHHHHHHHHHHH--------
Q 005594          168 KLAGNTQDGIQKYYEALKIDPH---YAPAYY-----NLGVVYSELM-------------QYDTALGCYEKAA--------  218 (689)
Q Consensus       168 ~~~~~~~~A~~~~~~al~~~~~---~~~~~~-----~la~~~~~~g-------------~~~~A~~~~~~al--------  218 (689)
                      .+.|.+++|...|++++..--.   ...++.     .-..+...++             +.+-....|+..+        
T Consensus       259 Ir~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN  338 (835)
T KOG2047|consen  259 IRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN  338 (835)
T ss_pred             HHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence            9999999999999998875211   111111     0000111111             1222233333332        


Q ss_pred             ----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 005594          219 ----LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV-SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL  293 (689)
Q Consensus       219 ----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  293 (689)
                          ..+|++...|.....  ...|+..+-+..|.++++. +|...  ....+.++..++..|...|+.+.|..+++++.
T Consensus       339 sVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~  414 (835)
T KOG2047|consen  339 SVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLYENNGDLDDARVIFEKAT  414 (835)
T ss_pred             HHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence                234555544444332  3345555555555555432 33322  22334445555555555566666666666665


Q ss_pred             hhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC------------------CCHHHHHHHHHHHHHcCCHH
Q 005594          294 YYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP------------------HCAEACNNLGVIYKDRDNLD  351 (689)
Q Consensus       294 ~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------------------~~~~~~~~la~~~~~~g~~~  351 (689)
                      +..-..    ..+|..-|..-....+++.|+++++++...-.                  .+..+|..++......|-++
T Consensus       415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe  494 (835)
T KOG2047|consen  415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE  494 (835)
T ss_pred             cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence            544222    34555555555555566666665555543311                  12345555555555556666


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH---HHHcCCHHHHHHHHH
Q 005594          352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAEAYNNLGVL---YRDAGSISLAIDAYE  426 (689)
Q Consensus       352 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~---~~~~g~~~~A~~~~~  426 (689)
                      .-...|++.+.+.--.|....|.|..+....-++++.+.|++.+.+.  |...++|...-..   -..-.+.+.|...|+
T Consensus       495 stk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE  574 (835)
T KOG2047|consen  495 STKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE  574 (835)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            66666666665555555555555555555555566666666555553  3333333322111   112224555566666


Q ss_pred             HHHhcCC
Q 005594          427 QCLKIDP  433 (689)
Q Consensus       427 ~al~~~p  433 (689)
                      +|++..|
T Consensus       575 qaL~~Cp  581 (835)
T KOG2047|consen  575 QALDGCP  581 (835)
T ss_pred             HHHhcCC
Confidence            6665555

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.52  E-value=3.5e-12  Score=138.17  Aligned_cols=269  Identities=14%  Similarity=0.040  Sum_probs=185.6

Q ss_pred             ccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005594           44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG  123 (689)
Q Consensus        44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  123 (689)
                      .+...+.+..++..+...+++++|++.++..++.+|+....++.+|.++++.++++++...  .++...+.         
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~---------   95 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ---------   95 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc---------
Confidence            4457888999999999999999999999999999999999999999999999997776655  45444333         


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005594          124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE  203 (689)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  203 (689)
                           ..++ .+++++...+...+++..+       ++.+|.+|...|+.++|...|+++++.+|+++.++.++|..|..
T Consensus        96 -----~~~~-~~ve~~~~~i~~~~~~k~A-------l~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae  162 (906)
T PRK14720         96 -----NLKW-AIVEHICDKILLYGENKLA-------LRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE  162 (906)
T ss_pred             -----ccch-hHHHHHHHHHHhhhhhhHH-------HHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence                 3344 4444444444445555444       77788888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH-HHHH-----------
Q 005594          204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI-ALTD-----------  271 (689)
Q Consensus       204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~-----------  271 (689)
                      . +.++|++++.+++..              +...+++.++.+++.+.+..+|.+.+....+-. +...           
T Consensus       163 ~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~  227 (906)
T PRK14720        163 E-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLE  227 (906)
T ss_pred             h-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHH
Confidence            8 888888888888765              556668888888888888888876654332211 1112           


Q ss_pred             -hhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 005594          272 -LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL  350 (689)
Q Consensus       272 -l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  350 (689)
                       +-..|...+++++++.+++.+++.+|++..+...++.+|.  ++|.. ...++..+++.           .+--...++
T Consensus       228 ~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s-----------~l~~~~~~~  293 (906)
T PRK14720        228 DLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS-----------DIGNNRKPV  293 (906)
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh-----------ccccCCccH
Confidence             2244555566666666666666666666666666666665  22222 23333333221           000111355


Q ss_pred             HHHHHHHHHHHhcCC
Q 005594          351 DKAVECYQMALSIKP  365 (689)
Q Consensus       351 ~~A~~~~~~al~~~p  365 (689)
                      ..|+.-|++-+..++
T Consensus       294 ~~~i~~fek~i~f~~  308 (906)
T PRK14720        294 KDCIADFEKNIVFDT  308 (906)
T ss_pred             HHHHHHHHHHeeecC
Confidence            677777777766543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.52  E-value=2.6e-12  Score=116.12  Aligned_cols=177  Identities=23%  Similarity=0.217  Sum_probs=136.0

Q ss_pred             HHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005594          244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY  323 (689)
Q Consensus       244 A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  323 (689)
                      +...+-.....+|++... ..++..+..       .|+-+.+..+..++...+|.+...+..+|...+..|++.+|+..+
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~-------~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~  123 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYL-------RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVL  123 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHh-------cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHH
Confidence            444444444555555443 333333333       345566666666666666777777777888888888888888888


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 005594          324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE  403 (689)
Q Consensus       324 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  403 (689)
                      +++....|++.++|..+|.+|.+.|++++|...|.+++++.|+.+.+..|+|..+.-.|+++.|..++..+....+.+..
T Consensus       124 rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~  203 (257)
T COG5010         124 RKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR  203 (257)
T ss_pred             HHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          404 AYNNLGVLYRDAGSISLAIDAYEQC  428 (689)
Q Consensus       404 ~~~~la~~~~~~g~~~~A~~~~~~a  428 (689)
                      +..+|+.+...+|++++|...-.+-
T Consensus       204 v~~NLAl~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         204 VRQNLALVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             HHHHHHHHHhhcCChHHHHhhcccc
Confidence            8888888888888888888765543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.51  E-value=3.6e-10  Score=113.65  Aligned_cols=360  Identities=14%  Similarity=0.132  Sum_probs=267.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594           64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ--NACAHTHCGILYKDEGRLVEAAESYHK  141 (689)
Q Consensus        64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~  141 (689)
                      |..--.+|++++-.--+-+.+|......+..+|+...-...|.++|..-|-  +..+|-..-......+-.+-++..|++
T Consensus        84 ~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrR  163 (835)
T KOG2047|consen   84 YESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRR  163 (835)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHH
Confidence            444555666666644556788889999999999999999999999998774  455676666777788888999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh------------------------CCCC-------
Q 005594          142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------------------------DPHY-------  190 (689)
Q Consensus       142 al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------------~~~~-------  190 (689)
                      .++..|...+.+          ...+...+++++|.+.+...+..                        +|+.       
T Consensus       164 YLk~~P~~~eey----------ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvd  233 (835)
T KOG2047|consen  164 YLKVAPEAREEY----------IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVD  233 (835)
T ss_pred             HHhcCHHHHHHH----------HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHH
Confidence            999999875432          22334456666666666555432                        2221       


Q ss_pred             --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH-----HHHHHHHHHcC---------
Q 005594          191 --------------APAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAY-----CNMGVIYKNRG---------  239 (689)
Q Consensus       191 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~-----~~la~~~~~~g---------  239 (689)
                                    ...|..||..|.+.|.+++|...|++++..--.   ...++     +.-..+...++         
T Consensus       234 aiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~  313 (835)
T KOG2047|consen  234 AIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNE  313 (835)
T ss_pred             HHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccCh
Confidence                          346788999999999999999999999874221   11111     11111111111         


Q ss_pred             ----CHHHHHHHHHHH------------HhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh-CCC----
Q 005594          240 ----DLESAIACYERC------------LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY-NWH----  298 (689)
Q Consensus       240 ----~~~~A~~~~~~a------------l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~----  298 (689)
                          +.+-....|+..            +..+|++...|.....++         .++..+-+..|.+++.. +|.    
T Consensus       314 ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~---------e~~~~~~i~tyteAv~~vdP~ka~G  384 (835)
T KOG2047|consen  314 EDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY---------EGNAAEQINTYTEAVKTVDPKKAVG  384 (835)
T ss_pred             hhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh---------cCChHHHHHHHHHHHHccCcccCCC
Confidence                223333444443            445788877776554443         57889999999988854 554    


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------
Q 005594          299 -YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN-------  366 (689)
Q Consensus       299 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------  366 (689)
                       ....|..+|..|...|+.+.|...|+++.+..-.    -..+|...|..-+...+++.|+++.++|...-..       
T Consensus       385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd  464 (835)
T KOG2047|consen  385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD  464 (835)
T ss_pred             ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence             3468999999999999999999999999987532    3788999999999999999999999999865211       


Q ss_pred             -----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C
Q 005594          367 -----------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID--P  433 (689)
Q Consensus       367 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p  433 (689)
                                 ...+|..++......|-++.-...|++.+.+.--.+++..+.|..+....-+++|.+.|++.+.+.  |
T Consensus       465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p  544 (835)
T KOG2047|consen  465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP  544 (835)
T ss_pred             CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence                       234788999999999999999999999999988889999999999999999999999999999986  4


Q ss_pred             CChhhHhhH
Q 005594          434 DSRNAGQNR  442 (689)
Q Consensus       434 ~~~~~~~~~  442 (689)
                      +-.+.|..+
T Consensus       545 ~v~diW~tY  553 (835)
T KOG2047|consen  545 NVYDIWNTY  553 (835)
T ss_pred             cHHHHHHHH
Confidence            444444443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.51  E-value=5.2e-11  Score=106.48  Aligned_cols=184  Identities=17%  Similarity=0.158  Sum_probs=148.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 005594          187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA  266 (689)
Q Consensus       187 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  266 (689)
                      .++...++-....+....|+.+.|..++++.....|++..+....|..+...|++++|+++|+..++.+|.+...+....
T Consensus        48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl  127 (289)
T KOG3060|consen   48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL  127 (289)
T ss_pred             CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence            34445666677777888899999999999988888999999999999999999999999999999999998876665444


Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005594          267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD  346 (689)
Q Consensus       267 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  346 (689)
                      .++..       +|+..+|++.+...++..+.+.++|..++.+|...|+|++|.-+|++.+-+.|.++..+..+|.+++-
T Consensus       128 Ailka-------~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt  200 (289)
T KOG3060|consen  128 AILKA-------QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT  200 (289)
T ss_pred             HHHHH-------cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            44433       55777888888888888888888888888888888888888888888888888888888888888777


Q ss_pred             cC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005594          347 RD---NLDKAVECYQMALSIKPNFSQSLNNLGVV  377 (689)
Q Consensus       347 ~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~  377 (689)
                      +|   +++-|.++|.++++++|.+..+++.+-.+
T Consensus       201 ~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc  234 (289)
T KOG3060|consen  201 QGGAENLELARKYYERALKLNPKNLRALFGIYLC  234 (289)
T ss_pred             HhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence            66   56778888888888888776666555444

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.50  E-value=1.6e-12  Score=132.62  Aligned_cols=226  Identities=19%  Similarity=0.169  Sum_probs=191.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 005594          188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI  267 (689)
Q Consensus       188 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  267 (689)
                      |........++.++...|-...|+..+++.        ..|-....+|...|+..+|.....+-++.+|+ +       .
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d-~-------~  458 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPD-P-------R  458 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCc-c-------h
Confidence            334556678899999999999999999884        67778889999999999999999998884443 3       3


Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005594          268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR  347 (689)
Q Consensus       268 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  347 (689)
                      .|..+|++.....-+++|.++.+..      +..+...+|......++|+++.+.++..++++|-....|+.+|.+..+.
T Consensus       459 lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql  532 (777)
T KOG1128|consen  459 LYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL  532 (777)
T ss_pred             hHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH
Confidence            4445555444444566666655543      4456777788788889999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594          348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ  427 (689)
Q Consensus       348 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  427 (689)
                      ++++.|.++|..++.++|++.++|++++..|.+.|+..+|...++++++.+-++..+|.|...+..+.|.+++|++.|.+
T Consensus       533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~r  612 (777)
T KOG1128|consen  533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHR  612 (777)
T ss_pred             hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988999999999999999999999999999


Q ss_pred             HHhcCCCC
Q 005594          428 CLKIDPDS  435 (689)
Q Consensus       428 al~~~p~~  435 (689)
                      .+.+.-+.
T Consensus       613 ll~~~~~~  620 (777)
T KOG1128|consen  613 LLDLRKKY  620 (777)
T ss_pred             HHHhhhhc
Confidence            98775443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.49  E-value=6.1e-12  Score=113.77  Aligned_cols=181  Identities=17%  Similarity=0.141  Sum_probs=167.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594           63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA  142 (689)
Q Consensus        63 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  142 (689)
                      +...+...+-+....+|++..+ ..++..+...|+-+.+.....++...+|.+...+..+|......|++.+|+..++++
T Consensus        48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA  126 (257)
T COG5010          48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA  126 (257)
T ss_pred             hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            3344666666777889999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005594          143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP  222 (689)
Q Consensus       143 l~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  222 (689)
                      ....|++.+.       +..+|.+|.+.|++++|...|.+++++.|..+.+..++|..+.-.|+++.|..++..+....+
T Consensus       127 ~~l~p~d~~~-------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~  199 (257)
T COG5010         127 ARLAPTDWEA-------WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA  199 (257)
T ss_pred             hccCCCChhh-------hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence            9999999887       778888899999999999999999999999999999999999999999999999999999989


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          223 MYAEAYCNMGVIYKNRGDLESAIACYERC  251 (689)
Q Consensus       223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a  251 (689)
                      .+..+..+++.+....|++++|.....+-
T Consensus       200 ad~~v~~NLAl~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         200 ADSRVRQNLALVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             CchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence            89999999999999999999998876553

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.48  E-value=1.3e-12  Score=113.50  Aligned_cols=119  Identities=14%  Similarity=0.147  Sum_probs=102.7

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594          321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT  400 (689)
Q Consensus       321 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  400 (689)
                      +.+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++.+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            35778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhH
Q 005594          401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG  439 (689)
Q Consensus       401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  439 (689)
                      ++..++.+|.++...|++++|+..|+++++++|++....
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence            888888889999889999999999999998888876543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.46  E-value=9.1e-13  Score=121.28  Aligned_cols=115  Identities=29%  Similarity=0.462  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005594          334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR  413 (689)
Q Consensus       334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  413 (689)
                      ++-+..-|.-+.+.++|.+|+..|.+|++++|.++..|.+.+.+|.++|+++.|++.++.++.++|.+..+|..||.+|.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            34456678888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhh
Q 005594          414 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY  448 (689)
Q Consensus       414 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  448 (689)
                      .+|++++|++.|+++|+++|++...+.++-.+..-
T Consensus       161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~  195 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK  195 (304)
T ss_pred             ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence            99999999999999999999999887776554443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.45  E-value=5.4e-12  Score=128.78  Aligned_cols=217  Identities=18%  Similarity=0.141  Sum_probs=193.2

Q ss_pred             HHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005594          160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG  239 (689)
Q Consensus       160 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  239 (689)
                      -..++..+...|-...|+..|++        ...|-....||...|+..+|..+..+-++ .|.++..|..+|.+.....
T Consensus       401 q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s  471 (777)
T KOG1128|consen  401 QRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPS  471 (777)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChH
Confidence            34577888888999999999988        46778889999999999999999999998 6777889999998888877


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 005594          240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA  319 (689)
Q Consensus       240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  319 (689)
                      -|++|.++.+..-             +.+...+|......++++++.+.++..++++|-....|+.+|.+..+.++++.|
T Consensus       472 ~yEkawElsn~~s-------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a  538 (777)
T KOG1128|consen  472 LYEKAWELSNYIS-------------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA  538 (777)
T ss_pred             HHHHHHHHhhhhh-------------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence            7777777766532             223344555556678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005594          320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN  398 (689)
Q Consensus       320 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  398 (689)
                      .+.|..++..+|++.++|++++..|...++..+|...++++++.+-++..+|.|.-.+....|.+++|++.+.+.+.+.
T Consensus       539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998874

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.43  E-value=2e-11  Score=131.80  Aligned_cols=142  Identities=8%  Similarity=-0.037  Sum_probs=89.5

Q ss_pred             HHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005594           75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE  154 (689)
Q Consensus        75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  154 (689)
                      ....|+++++++.+|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++..+|++...  
T Consensus        79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~--  156 (694)
T PRK15179         79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE--  156 (694)
T ss_pred             HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH--
Confidence            334566666666666666666666666666666666666666666666666666666666666666666666666554  


Q ss_pred             HHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594          155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM  223 (689)
Q Consensus       155 ~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  223 (689)
                           +..+|.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+
T Consensus       157 -----~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        157 -----ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             -----HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence                 4445555555566666666666666666666666666666666666666666666666665443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.42  E-value=6.1e-12  Score=109.18  Aligned_cols=119  Identities=16%  Similarity=0.228  Sum_probs=113.8

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594          287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN  366 (689)
Q Consensus       287 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  366 (689)
                      +.+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++.+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 005594          367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY  405 (689)
Q Consensus       367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  405 (689)
                      ++..++.+|.++...|++++|+..++++++++|++....
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence            999999999999999999999999999999999876643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.42  E-value=6e-12  Score=106.37  Aligned_cols=105  Identities=12%  Similarity=0.047  Sum_probs=78.4

Q ss_pred             hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 005594          328 HFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN  406 (689)
Q Consensus       328 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  406 (689)
                      .+. ++..+..+.+|..+...|++++|...|+.+..++|.+...|++||.++..+|++++|+..|.+++.++|+++..++
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~  107 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW  107 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            344 5556667777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594          407 NLGVLYRDAGSISLAIDAYEQCLKID  432 (689)
Q Consensus       407 ~la~~~~~~g~~~~A~~~~~~al~~~  432 (689)
                      ++|.++...|+.+.|++.|+.++...
T Consensus       108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        108 AAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            77777777777777777777777665

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.41  E-value=3.1e-12  Score=117.78  Aligned_cols=108  Identities=22%  Similarity=0.254  Sum_probs=103.5

Q ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005594           46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL  125 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  125 (689)
                      ..++.+-..|..+++.++|++|+..|.++|+++|.++..|.+++.+|.++|.++.|++.++.++.++|....+|..+|.+
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A  158 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA  158 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            34677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005594          126 YKDEGRLVEAAESYHKALSADPSYKPAA  153 (689)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~  153 (689)
                      |..+|++++|++.|+++++++|++...+
T Consensus       159 ~~~~gk~~~A~~aykKaLeldP~Ne~~K  186 (304)
T KOG0553|consen  159 YLALGKYEEAIEAYKKALELDPDNESYK  186 (304)
T ss_pred             HHccCcHHHHHHHHHhhhccCCCcHHHH
Confidence            9999999999999999999999998653

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.37  E-value=1.2e-11  Score=120.01  Aligned_cols=168  Identities=14%  Similarity=0.028  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 005594          191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT  270 (689)
Q Consensus       191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  270 (689)
                      .......|.++...|++++|++.+.+.     .+.+.......++..+++++.|.+.++.+.+.+.+..  ...++.++.
T Consensus       102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~--l~qLa~awv  174 (290)
T PF04733_consen  102 EIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI--LTQLAEAWV  174 (290)
T ss_dssp             HHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH--HHHHHHHHH
Confidence            344556667777788888888877653     5567777788888888999999888888877766543  333444443


Q ss_pred             HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 005594          271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL  350 (689)
Q Consensus       271 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  350 (689)
                      .+..   ..+.+.+|..+|++..+..+.++..+..++.++..+|++++|...+++++..+|.++.++.+++.+....|+.
T Consensus       175 ~l~~---g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  175 NLAT---GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHH---TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHh---CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            3220   0234555555555555554555555555555555555555555555555555555555555555555555554


Q ss_pred             -HHHHHHHHHHHhcCCCCH
Q 005594          351 -DKAVECYQMALSIKPNFS  368 (689)
Q Consensus       351 -~~A~~~~~~al~~~p~~~  368 (689)
                       +.+.+++.+....+|+++
T Consensus       252 ~~~~~~~l~qL~~~~p~h~  270 (290)
T PF04733_consen  252 TEAAERYLSQLKQSNPNHP  270 (290)
T ss_dssp             CHHHHHHHHHCHHHTTTSH
T ss_pred             hhHHHHHHHHHHHhCCCCh
Confidence             334444444444455443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.36  E-value=1.1e-11  Score=120.34  Aligned_cols=259  Identities=18%  Similarity=0.096  Sum_probs=190.6

Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005594          166 SLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA  244 (689)
Q Consensus       166 ~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  244 (689)
                      .++..|+|..++...+ ....++. ..+....+.+++..+|+++..+.-+...   .+....+...++..+...++.+.+
T Consensus        10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~~   85 (290)
T PF04733_consen   10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKESA   85 (290)
T ss_dssp             HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred             HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHHH
Confidence            3456799999997766 2233332 3556778899999999998776555432   233345566677766665677777


Q ss_pred             HHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005594          245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE  324 (689)
Q Consensus       245 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  324 (689)
                      +..++..+.........     .+....+.++...|++++|++.+.+.     .+.+.......++..+++++.|.+.++
T Consensus        86 l~~l~~~~~~~~~~~~~-----~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~  155 (290)
T PF04733_consen   86 LEELKELLADQAGESNE-----IVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELK  155 (290)
T ss_dssp             HHHHHHCCCTS---CHH-----HHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHhccccccH-----HHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence            77666554332221111     12233445566689999999888764     567888889999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 005594          325 LAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA  402 (689)
Q Consensus       325 ~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  402 (689)
                      .+.+.+.+..-.....+++....|  ++.+|...|++..+..+..+..+..++.++..+|++++|.+.++++++.+|+++
T Consensus       156 ~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~  235 (290)
T PF04733_consen  156 NMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP  235 (290)
T ss_dssp             HHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence            999888887766666677776666  699999999998888888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCChhh
Q 005594          403 EAYNNLGVLYRDAGSI-SLAIDAYEQCLKIDPDSRNA  438 (689)
Q Consensus       403 ~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~  438 (689)
                      +++.+++.+...+|+. +.+.+++.+....+|+++-.
T Consensus       236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence            9999999999999998 66778888888899997644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.35  E-value=4.1e-11  Score=101.32  Aligned_cols=107  Identities=15%  Similarity=0.104  Sum_probs=100.9

Q ss_pred             cCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594           45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI  124 (689)
Q Consensus        45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  124 (689)
                      +.+-+.++..|..++..|++++|.++|+-+...+|.+...|+++|.++..+|++++|+..|.+++.++|+++..+.++|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005594          125 LYKDEGRLVEAAESYHKALSADPSYKP  151 (689)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~p~~~~  151 (689)
                      +++..|+.+.|.+.|+.++......++
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~~~~~~  138 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRICGEVSE  138 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhccChh
Confidence            999999999999999999998744433

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.30  E-value=1.2e-09  Score=99.91  Aligned_cols=279  Identities=19%  Similarity=0.166  Sum_probs=213.3

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005594          127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ  206 (689)
Q Consensus       127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  206 (689)
                      .+..+|.+|++++..-.+.+|.+...       +..+|.+|+...++..|..+|++.-...|......+..+..+++.+.
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAg-------LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i   93 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAG-------LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI   93 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence            56778999999999888888877655       67788899999999999999999999999988888888999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHH
Q 005594          207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV  286 (689)
Q Consensus       207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  286 (689)
                      +.+|+...........-.......-+-+.+..+++..+....++.-..  +.       +....+.|-+..+.|++++|+
T Consensus        94 ~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~-------Ad~~in~gCllykegqyEaAv  164 (459)
T KOG4340|consen   94 YADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NE-------ADGQINLGCLLYKEGQYEAAV  164 (459)
T ss_pred             cHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cc-------cchhccchheeeccccHHHHH
Confidence            999998887765432222344555566677777777777666553211  11       334556677777789999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC----------------C---------HHHH
Q 005594          287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPH----------------C---------AEAC  337 (689)
Q Consensus       287 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~----------------~---------~~~~  337 (689)
                      +-|+.+++...-.+-.-++++.++++.++++.|+++..+.++.    +|.                +         .+++
T Consensus       165 qkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf  244 (459)
T KOG4340|consen  165 QKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF  244 (459)
T ss_pred             HHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence            9999999998888889999999999999999999988887764    232                1         3556


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005594          338 NNLGVIYKDRDNLDKAVECYQMALSIKPN-----FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY  412 (689)
Q Consensus       338 ~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  412 (689)
                      +..+.++++.|+++.|.+.+.   .+.|.     ++..+.+++..- ..+++.+...-++-.+.++|--.+...++-.+|
T Consensus       245 NLKaAIeyq~~n~eAA~eaLt---DmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLlly  320 (459)
T KOG4340|consen  245 NLKAAIEYQLRNYEAAQEALT---DMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLY  320 (459)
T ss_pred             hhhhhhhhhcccHHHHHHHhh---cCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            677888889999988877653   33332     355777776543 346677777788888888997788888999999


Q ss_pred             HHcCCHHHHHHHH
Q 005594          413 RDAGSISLAIDAY  425 (689)
Q Consensus       413 ~~~g~~~~A~~~~  425 (689)
                      .+..-++-|...+
T Consensus       321 CKNeyf~lAADvL  333 (459)
T KOG4340|consen  321 CKNEYFDLAADVL  333 (459)
T ss_pred             hhhHHHhHHHHHH
Confidence            9888777777654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.30  E-value=1.3e-09  Score=103.28  Aligned_cols=184  Identities=11%  Similarity=0.035  Sum_probs=139.0

Q ss_pred             ccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH---HHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HH
Q 005594           44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---AC  117 (689)
Q Consensus        44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~  117 (689)
                      ...+++.++..|..++..|+|++|+..|++++...|..+.+   .+.+|.++++.+++++|+..+++.++.+|++   +.
T Consensus        28 ~~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~  107 (243)
T PRK10866         28 PDNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY  107 (243)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence            34678889999999999999999999999999999987654   5899999999999999999999999998876   45


Q ss_pred             HHHHHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHH
Q 005594          118 AHTHCGILYKDEG---------------R---LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK  179 (689)
Q Consensus       118 ~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~  179 (689)
                      +++.+|.++...+               +   ..+|+..|++.++..|++.-+...    ...              +..
T Consensus       108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A----~~r--------------l~~  169 (243)
T PRK10866        108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA----TKR--------------LVF  169 (243)
T ss_pred             HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH----HHH--------------HHH
Confidence            7888888764443               1   357889999999999987543111    000              111


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERC  251 (689)
Q Consensus       180 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a  251 (689)
                      ++..+      ..--+..|..|.+.|.|..|+.-++.+++..|+.   .+++..++..|..+|..++|.+.....
T Consensus       170 l~~~l------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        170 LKDRL------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHH------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            11111      2233466777888888888888888888877654   567777888888888888887765543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.26  E-value=2.4e-09  Score=105.41  Aligned_cols=156  Identities=23%  Similarity=0.238  Sum_probs=138.8

Q ss_pred             CCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005594           78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA  157 (689)
Q Consensus        78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  157 (689)
                      +|....+++..+..++..|++++|+..++..++..|+|+..+...+.++...++.++|.+.+++++...|.....     
T Consensus       302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l-----  376 (484)
T COG4783         302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL-----  376 (484)
T ss_pred             CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH-----
Confidence            377888999999999999999999999999999999999999999999999999999999999999999997554     


Q ss_pred             HHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005594          158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN  237 (689)
Q Consensus       158 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  237 (689)
                        ..++|..+.+.|++.+|+..++..+..+|+++..|..|+..|..+|+-.+|...                 .+..+..
T Consensus       377 --~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~  437 (484)
T COG4783         377 --QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYAL  437 (484)
T ss_pred             --HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHh
Confidence              667788888889999999999999999999999999999999999987776544                 4556777


Q ss_pred             cCCHHHHHHHHHHHHhcCCC
Q 005594          238 RGDLESAIACYERCLAVSPN  257 (689)
Q Consensus       238 ~g~~~~A~~~~~~al~~~~~  257 (689)
                      .|++++|+..+..+.+...-
T Consensus       438 ~G~~~~A~~~l~~A~~~~~~  457 (484)
T COG4783         438 AGRLEQAIIFLMRASQQVKL  457 (484)
T ss_pred             CCCHHHHHHHHHHHHHhccC
Confidence            89999999999998877643

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.26  E-value=1e-09  Score=108.02  Aligned_cols=158  Identities=17%  Similarity=0.150  Sum_probs=145.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005594          297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV  376 (689)
Q Consensus       297 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  376 (689)
                      |....+++..+..++..|++++|+..++..+...|+|+..+...+.++.+.++.++|.+.+++++.++|+.+....++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCCh
Q 005594          377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD  454 (689)
Q Consensus       377 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  454 (689)
                      +|.+.|++.+|+..++..+..+|+++..|..|+..|..+|+..+|...+.+...+.-+-..+......+......+..
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~  460 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFP  460 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcH
Confidence            999999999999999999999999999999999999999999999999999999888877777666555555544443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.24  E-value=2.1e-10  Score=115.82  Aligned_cols=109  Identities=20%  Similarity=0.131  Sum_probs=103.1

Q ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005594           49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD  128 (689)
Q Consensus        49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  128 (689)
                      ..+...|..++..|+|++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++++|+++.+++.+|.++..
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005594          129 EGRLVEAAESYHKALSADPSYKPAAECLA  157 (689)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a  157 (689)
                      +|++++|+..|+++++++|++......+.
T Consensus        83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~  111 (356)
T PLN03088         83 LEEYQTAKAALEKGASLAPGDSRFTKLIK  111 (356)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999999999999999988754433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.23  E-value=1.9e-09  Score=99.84  Aligned_cols=176  Identities=16%  Similarity=0.169  Sum_probs=126.4

Q ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH---HHH
Q 005594           46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAH  119 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~  119 (689)
                      .+++.++..|..++..|+|.+|+..|++++...|.+   ..+.+.+|.+++..|++++|+..+++.++..|+++   .++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            467889999999999999999999999999998875   57899999999999999999999999999999864   578


Q ss_pred             HHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC
Q 005594          120 THCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP  188 (689)
Q Consensus       120 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  188 (689)
                      +.+|.++....           ...+|+..|+..++..|++.-+..                     |...+..+-+   
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~---------------------A~~~l~~l~~---  138 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE---------------------AKKRLAELRN---  138 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH---------------------HHHHHHHHHH---
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH---------------------HHHHHHHHHH---
Confidence            88888876543           345899999999999999764421                     1111111100   


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 005594          189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA---EAYCNMGVIYKNRGDLESAI  245 (689)
Q Consensus       189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~  245 (689)
                      .-..--+.+|..|.+.|.+..|+..++.+++..|+..   +++..++..+..+|..+.|.
T Consensus       139 ~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  139 RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            0123345567778888888888888888888777753   46777777788888777443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.22  E-value=3.6e-08  Score=102.07  Aligned_cols=324  Identities=17%  Similarity=0.184  Sum_probs=213.0

Q ss_pred             hCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHH------------HHHHHcCCCCHHHHHHHHHHHH
Q 005594           60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF------------SEAVKLDPQNACAHTHCGILYK  127 (689)
Q Consensus        60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~------------~~al~~~p~~~~~~~~la~~~~  127 (689)
                      ..|+.+.|.+..+-+     .+...|-++|....+..+.+-|.-++            +++.+ +|+  +.-...+.+..
T Consensus       740 tiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAi  811 (1416)
T KOG3617|consen  740 TIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAI  811 (1416)
T ss_pred             EeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHH
Confidence            458888887776654     23357777777777776666555443            33322 333  23344567778


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 005594          128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY  207 (689)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  207 (689)
                      +.|..++|...|++.-.               +-.+-..|...|.+++|.+.-+.-=.+  .--..|++.+..+...++.
T Consensus       812 eLgMlEeA~~lYr~ckR---------------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di  874 (1416)
T KOG3617|consen  812 ELGMLEEALILYRQCKR---------------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDI  874 (1416)
T ss_pred             HHhhHHHHHHHHHHHHH---------------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccH
Confidence            88999999999988754               334556677889999988876542221  1245788889999999999


Q ss_pred             HHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 005594          208 DTALGCYEKA----------ALERP----------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI  267 (689)
Q Consensus       208 ~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  267 (689)
                      +.|+++|+++          +..+|          .+...|...|..+...|+.+.|+.+|..+-.              
T Consensus       875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------------  940 (1416)
T KOG3617|consen  875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------------  940 (1416)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------------
Confidence            9999999886          22233          3456778889999999999999999887643              


Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCC--------
Q 005594          268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHC--------  333 (689)
Q Consensus       268 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~--------  333 (689)
                       ++.+-++...+|+.++|-.+.++.     .+..+.+.+|..|...|++.+|+..|.++-..      ...+        
T Consensus       941 -~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen  941 -YFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred             -hhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence             344455555667777776665543     45567777888888888888888777765432      1111        


Q ss_pred             ------HHHHHHHHHHHHHcC-CHHHHHHHHHHH------Hh-----------------cCC-CCHHHHHHHHHHHHHcC
Q 005594          334 ------AEACNNLGVIYKDRD-NLDKAVECYQMA------LS-----------------IKP-NFSQSLNNLGVVYTVQG  382 (689)
Q Consensus       334 ------~~~~~~la~~~~~~g-~~~~A~~~~~~a------l~-----------------~~p-~~~~~~~~la~~~~~~g  382 (689)
                            +.-....+..|...| +...|..+|.+|      ++                 ++| .++..+..-+..+....
T Consensus      1015 lal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred             HHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence                  111122233444444 445555444332      21                 123 45778888888888889


Q ss_pred             CHHHHHHHHHH------HHHh----------------CCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          383 KMDAAAEMIEK------AIAA----------------NPT---------YAEAYNNLGVLYRDAGSISLAIDAYEQC  428 (689)
Q Consensus       383 ~~~~A~~~~~~------al~~----------------~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a  428 (689)
                      +|++|...+-.      |+.+                .|.         ...++..+|.++.++|.|..|-+-|.+|
T Consensus      1095 qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence            99998876544      3433                111         1357888999999999999998887765

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.22  E-value=3.3e-10  Score=114.48  Aligned_cols=111  Identities=15%  Similarity=0.149  Sum_probs=66.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 005594          305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM  384 (689)
Q Consensus       305 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  384 (689)
                      ..|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++.++|+++.+++.+|.++..+|++
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence            34555555566666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005594          385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDA  415 (689)
Q Consensus       385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  415 (689)
                      ++|+..|+++++++|++..+...++.+...+
T Consensus        87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         87 QTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            6666666666666666655555555554433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.20  E-value=5.8e-09  Score=98.91  Aligned_cols=175  Identities=13%  Similarity=0.055  Sum_probs=133.1

Q ss_pred             CCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005594           80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA---HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL  156 (689)
Q Consensus        80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  156 (689)
                      .++..++..|..++..|++++|++.|++++...|..+.+   .+.+|.++++.+++++|+..+++.++.+|+++..    
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~----  105 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI----  105 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch----
Confidence            367788999999999999999999999999999988655   4899999999999999999999999999998775    


Q ss_pred             HHHHHHhHHHHHHcC------------------ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594          157 AIVLTDLGTSLKLAG------------------NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA  218 (689)
Q Consensus       157 a~~~~~l~~~~~~~~------------------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  218 (689)
                      ..+++.+|.++...+                  ...+|+..|++.++..|++..+              .+|...+..+ 
T Consensus       106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l-  170 (243)
T PRK10866        106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFL-  170 (243)
T ss_pred             HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHH-
Confidence            445666666543332                  1356778888888888886432              1111111111 


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHHHHhhhh
Q 005594          219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTK  275 (689)
Q Consensus       219 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~l~~~  275 (689)
                        ......--+..|..|.+.|.+..|+.-++.+++..|+.+   ++...+..++..+|..
T Consensus       171 --~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~  228 (243)
T PRK10866        171 --KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN  228 (243)
T ss_pred             --HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence              111133345789999999999999999999999988754   5666777788777753

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.17  E-value=1.5e-08  Score=95.38  Aligned_cols=280  Identities=14%  Similarity=0.128  Sum_probs=163.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHH
Q 005594          124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLG  198 (689)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la  198 (689)
                      .+...+|.+++++..--..+....+..+. ..+-.++.+++..+....++.+++.+-...+.+....     ..+...++
T Consensus        51 ~a~s~~g~y~~mL~~a~sqi~~a~~~~ds-~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~  129 (518)
T KOG1941|consen   51 TAHSEMGRYKEMLKFAVSQIDTARELEDS-DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMG  129 (518)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHH
Confidence            44445555555544433333222211111 1123446777777777888888888888777663322     35677799


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHH
Q 005594          199 VVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIAL  269 (689)
Q Consensus       199 ~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~  269 (689)
                      ..+..++.++++++.|+++++...++      ..++..+|..+....++++|.-+..++.++.....   ........++
T Consensus       130 ~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l  209 (518)
T KOG1941|consen  130 NAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL  209 (518)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence            99999999999999999999874332      35788899999999999999999999987754321   1222234445


Q ss_pred             HHhhhhhhhcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005594          270 TDLGTKVKLEGDINQGVAYYKKALYYNW------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI  343 (689)
Q Consensus       270 ~~l~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  343 (689)
                      +.++..+..+|..-.|.++.+++.++.-      .....+..+|.+|...|+.+.|..-|+++......   +-..+|  
T Consensus       210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~---~gdrmg--  284 (518)
T KOG1941|consen  210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS---LGDRMG--  284 (518)
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh---hhhhHH--
Confidence            5555555566666666666666554421      12234444555555555555555555554432110   000011  


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHhCCCc------HHHHHHHHHHH
Q 005594          344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM-----DAAAEMIEKAIAANPTY------AEAYNNLGVLY  412 (689)
Q Consensus       344 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----~~A~~~~~~al~~~p~~------~~~~~~la~~~  412 (689)
                                             ..+++...+.++....-.     -.|++.-++++++....      ...+..++.+|
T Consensus       285 -----------------------qv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iY  341 (518)
T KOG1941|consen  285 -----------------------QVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIY  341 (518)
T ss_pred             -----------------------HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                                   112333333333332222     23666666666553221      35677788888


Q ss_pred             HHcCCHHHHHHHHHHHHhcC
Q 005594          413 RDAGSISLAIDAYEQCLKID  432 (689)
Q Consensus       413 ~~~g~~~~A~~~~~~al~~~  432 (689)
                      ..+|..++=...+.++-+..
T Consensus       342 rs~gl~d~~~~h~~ra~~~~  361 (518)
T KOG1941|consen  342 RSKGLQDELRAHVVRAHECV  361 (518)
T ss_pred             HhccchhHHHHHHHHHHHHH
Confidence            88887777777777665543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=99.15  E-value=4.2e-07  Score=86.78  Aligned_cols=296  Identities=19%  Similarity=0.108  Sum_probs=188.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Q 005594          122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVV  200 (689)
Q Consensus       122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~  200 (689)
                      .|.+....|+-..|.+.-.++-++-..+.+...     ...-+......|+++.|.+.|+.++. +|+. .-.+..|-.-
T Consensus        90 tGliAagAGda~lARkmt~~~~~llssDqepLI-----hlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyle  163 (531)
T COG3898          90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLI-----HLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLE  163 (531)
T ss_pred             hhhhhhccCchHHHHHHHHHHHhhhhccchHHH-----HHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHH
Confidence            456666788889999988888765555554422     23334555667999999999998875 3332 2222223333


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-HHHhhHHHHHHHhhhhhhhc
Q 005594          201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKVKLE  279 (689)
Q Consensus       201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~l~~~~~~~  279 (689)
                      ...+|..+.|..+-+++....|..+.++...-...+..|+++.|+++.+......--.. .+....+..+...+ .....
T Consensus       164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA-~s~ld  242 (531)
T COG3898         164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA-MSLLD  242 (531)
T ss_pred             HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH-HHHhc
Confidence            45789999999999999999999999888888889999999999999887654321111 11111111111111 11113


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594          280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM  359 (689)
Q Consensus       280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  359 (689)
                      .+...|.....+++++.|+....-..-+..++..|+..++-.+++.+.+..|.-.     ++.+|....--+.++.-+++
T Consensus       243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-----ia~lY~~ar~gdta~dRlkR  317 (531)
T COG3898         243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-----IALLYVRARSGDTALDRLKR  317 (531)
T ss_pred             CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-----HHHHHHHhcCCCcHHHHHHH
Confidence            4566777777777777777777777777777777777777777777777666421     22233322222233333333


Q ss_pred             ---HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 005594          360 ---ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-GSISLAIDAYEQCLK  430 (689)
Q Consensus       360 ---al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~  430 (689)
                         ...+.|++.+....++..-+..|++..|..--+.+....|. ..++..|+.+-... |+-.+...++-++++
T Consensus       318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence               33456777777777777777777777777777777666665 44556666665554 777777776666664

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.14  E-value=7.9e-09  Score=95.79  Aligned_cols=175  Identities=23%  Similarity=0.210  Sum_probs=124.5

Q ss_pred             CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005594           81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA  157 (689)
Q Consensus        81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  157 (689)
                      ++..++..|..++..|++.+|++.|++++...|..   ..+.+.+|.+++..|++++|+..+++.++..|+++..    .
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~----~   79 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA----D   79 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH----H
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch----h
Confidence            56789999999999999999999999999998875   5789999999999999999999999999999998754    3


Q ss_pred             HHHHHhHHHHHHc-----------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005594          158 IVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE  226 (689)
Q Consensus       158 ~~~~~l~~~~~~~-----------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  226 (689)
                      .+++.+|.++...           +...+|+..|+..+...|++..+-              +|...+..+-+   ....
T Consensus        80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~  142 (203)
T PF13525_consen   80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAE  142 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHH
T ss_pred             hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHH
Confidence            3455555554432           334577778888887777754322              11111111110   1133


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHHHHhhhhh
Q 005594          227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTKV  276 (689)
Q Consensus       227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~l~~~~  276 (689)
                      --+.+|..|.+.|.+..|+..++.+++..|+..   .+...+..++..+|...
T Consensus       143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence            456789999999999999999999999999865   45666777788877543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.13  E-value=4.3e-09  Score=103.22  Aligned_cols=134  Identities=22%  Similarity=0.315  Sum_probs=90.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 005594          281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-DNLDKAVECYQM  359 (689)
Q Consensus       281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~  359 (689)
                      ++++|+.++++++              .+|...|++..|-              ..+..+|.+|... |++++|+++|++
T Consensus        89 ~~~~Ai~~~~~A~--------------~~y~~~G~~~~aA--------------~~~~~lA~~ye~~~~d~e~Ai~~Y~~  140 (282)
T PF14938_consen   89 DPDEAIECYEKAI--------------EIYREAGRFSQAA--------------KCLKELAEIYEEQLGDYEKAIEYYQK  140 (282)
T ss_dssp             THHHHHHHHHHHH--------------HHHHHCT-HHHHH--------------HHHHHHHHHHCCTT--HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH--------------HHHHhcCcHHHHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5666666666554              3445555555553              3444567777777 788888888888


Q ss_pred             HHhcCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594          360 ALSIKPN--F----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYE  426 (689)
Q Consensus       360 al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~  426 (689)
                      |+++...  .    ...+..+|.++...|+|++|++.|++.....-++       ...+...+.++...|+...|...++
T Consensus       141 A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~  220 (282)
T PF14938_consen  141 AAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALE  220 (282)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            8776321  1    3467788888999999999999999888753221       2355677888999999999999999


Q ss_pred             HHHhcCCCChhhHhhH
Q 005594          427 QCLKIDPDSRNAGQNR  442 (689)
Q Consensus       427 ~al~~~p~~~~~~~~~  442 (689)
                      +....+|......-..
T Consensus       221 ~~~~~~~~F~~s~E~~  236 (282)
T PF14938_consen  221 RYCSQDPSFASSREYK  236 (282)
T ss_dssp             HHGTTSTTSTTSHHHH
T ss_pred             HHHhhCCCCCCcHHHH
Confidence            9999999876655443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=99.13  E-value=3e-06  Score=89.63  Aligned_cols=201  Identities=18%  Similarity=0.101  Sum_probs=138.0

Q ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 005594           50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE  129 (689)
Q Consensus        50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  129 (689)
                      ..++-..-....+++.+|++.+.+.++..|+..-+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..+
T Consensus        11 rr~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~   90 (932)
T KOG2053|consen   11 RRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDL   90 (932)
T ss_pred             HHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHH
Confidence            34444555678899999999999999999999999999999999999999999888877777888888999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH-------------
Q 005594          130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN-------------  196 (689)
Q Consensus       130 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-------------  196 (689)
                      +++++|..+|++++..+|+ .+.       +..+-.+|.+.++|.+-.+.--+..+..|+.+..+..             
T Consensus        91 ~~~d~~~~~Ye~~~~~~P~-eel-------l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~  162 (932)
T KOG2053|consen   91 GKLDEAVHLYERANQKYPS-EEL-------LYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSEN  162 (932)
T ss_pred             hhhhHHHHHHHHHHhhCCc-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCc
Confidence            9999999999999999999 444       2223333333333333222222222222322211111             


Q ss_pred             ---------------------------------HHHHHHHcCCHHHHHHHHHHH-HH-hCCCCHHHHHHHHHHHHHcCCH
Q 005594          197 ---------------------------------LGVVYSELMQYDTALGCYEKA-AL-ERPMYAEAYCNMGVIYKNRGDL  241 (689)
Q Consensus       197 ---------------------------------la~~~~~~g~~~~A~~~~~~a-l~-~~p~~~~~~~~la~~~~~~g~~  241 (689)
                                                       .-.++..+|++++|.+.+..- .+ ..+.+..........+...+++
T Consensus       163 ~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w  242 (932)
T KOG2053|consen  163 ELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRW  242 (932)
T ss_pred             ccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCh
Confidence                                             113344566777777777332 22 2333444444556666777777


Q ss_pred             HHHHHHHHHHHhcCCCc
Q 005594          242 ESAIACYERCLAVSPNF  258 (689)
Q Consensus       242 ~~A~~~~~~al~~~~~~  258 (689)
                      .+-.+...+++...+++
T Consensus       243 ~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  243 QELFELSSRLLEKGNDD  259 (932)
T ss_pred             HHHHHHHHHHHHhCCcc
Confidence            77777777777777765

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.12  E-value=1.8e-09  Score=91.36  Aligned_cols=105  Identities=24%  Similarity=0.303  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 005594          335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNL  408 (689)
Q Consensus       335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l  408 (689)
                      +.++.+|..+...|++++|++.|+++++.+|++   ..+++.+|.++...|++++|+..+++++...|++   +.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            466777777777888888888888887777665   4577778888888888888888888888877764   5677888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhhH
Q 005594          409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAG  439 (689)
Q Consensus       409 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  439 (689)
                      |.++..+|++++|..+++++++..|++..+.
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence            8888888888888888888888888776543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=3.1e-09  Score=99.19  Aligned_cols=123  Identities=22%  Similarity=0.256  Sum_probs=107.2

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 005594          315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMI  391 (689)
Q Consensus       315 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~  391 (689)
                      +.+.-+.-++.-+..+|++.+-|..||.+|..+|++..|...|.+++++.|++++.+..+|.++..+.   ...++...+
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            35566677778888899999999999999999999999999999999999999999999998877643   467889999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 005594          392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN  437 (689)
Q Consensus       392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  437 (689)
                      ++++.++|++..+.+.||..++..|++.+|...++..++..|.+..
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            9999999999999999999999999999999999999999887654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.10  E-value=2.3e-09  Score=90.59  Aligned_cols=105  Identities=19%  Similarity=0.193  Sum_probs=97.5

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHH
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTH  121 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~  121 (689)
                      ++.++.+|..+...|++++|++.|+++++.+|++   ..+++.+|.++...|++++|+..|++++..+|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            5678999999999999999999999999998876   5789999999999999999999999999998875   678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 005594          122 CGILYKDEGRLVEAAESYHKALSADPSYKPA  152 (689)
Q Consensus       122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  152 (689)
                      +|.++...|++++|+..++++++..|++..+
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            9999999999999999999999999997654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.10  E-value=1.9e-08  Score=94.61  Aligned_cols=306  Identities=16%  Similarity=0.166  Sum_probs=181.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh----CCC--CHH
Q 005594          119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI----DPH--YAP  192 (689)
Q Consensus       119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~--~~~  192 (689)
                      ....|.-++...++++|+..+.+.+..-.+...-    -..+-.+......+|.+++++..--..+..    +..  ..+
T Consensus         9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~R----f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGR----FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE   84 (518)
T ss_pred             HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHH----HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666777777777777776543322111    112333444455556666655543322222    111  245


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 005594          193 AYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI  267 (689)
Q Consensus       193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  267 (689)
                      ++.+++..+....++.+++.+-+..+......     ......++.++..++.++++++.|+++++...+..+....   
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE---  161 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE---  161 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee---
Confidence            66777777777777777777766666543222     2455556777777777777777777776654433222111   


Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----C------HHHH
Q 005594          268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----C------AEAC  337 (689)
Q Consensus       268 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~------~~~~  337 (689)
                                                      -.++..+|.++....++++|..+..++.++...    +      ..++
T Consensus       162 --------------------------------lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l  209 (518)
T KOG1941|consen  162 --------------------------------LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL  209 (518)
T ss_pred             --------------------------------eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence                                            134555566666666666666666665554211    1      3356


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHH
Q 005594          338 NNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAY  405 (689)
Q Consensus       338 ~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~  405 (689)
                      +.++..+..+|..-.|.++.+++.++.      +-.......+|.+|...|+.+.|..-|+++......      ..+++
T Consensus       210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al  289 (518)
T KOG1941|consen  210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEAL  289 (518)
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            677777888888888888888877662      223456777888888888888888888888765321      24566


Q ss_pred             HHHHHHHHHcCCHHH-----HHHHHHHHHhcCCC----ChhhHhhHHHHhhhccCCChHHHHHHHHH
Q 005594          406 NNLGVLYRDAGSISL-----AIDAYEQCLKIDPD----SRNAGQNRLLAMNYINEGHDDKLFEAHRD  463 (689)
Q Consensus       406 ~~la~~~~~~g~~~~-----A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (689)
                      ...++++....-..+     |++.-++++++...    ......+..++..|-..|..++.-+..++
T Consensus       290 ~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r  356 (518)
T KOG1941|consen  290 DGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR  356 (518)
T ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            667777766555555     88888888776443    23334455667777666666655444333

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.09  E-value=3.3e-09  Score=104.07  Aligned_cols=169  Identities=21%  Similarity=0.232  Sum_probs=122.7

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHcCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005594           89 GICLQMQNMGRLAFDSFSEAVKLDP--Q----NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD  162 (689)
Q Consensus        89 a~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~  162 (689)
                      |.+|...+++++|.+.|.++....-  +    -...+...+.++.+. ++++|+.+|++++.+.-.... ....+.++..
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~-~~~aA~~~~~  119 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR-FSQAAKCLKE  119 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence            5666777777777777777765421  1    133455556666555 999999999999887443322 2234777889


Q ss_pred             hHHHHHHc-CChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C---HHHH
Q 005594          163 LGTSLKLA-GNTQDGIQKYYEALKIDPH------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPM----Y---AEAY  228 (689)
Q Consensus       163 l~~~~~~~-~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~---~~~~  228 (689)
                      +|.++... |++++|+++|+++++....      ....+..+|.++...|+|++|++.|++.....-+    .   ...+
T Consensus       120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~  199 (282)
T PF14938_consen  120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF  199 (282)
T ss_dssp             HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence            99999998 9999999999999987322      1456788999999999999999999999875322    1   2355


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 005594          229 CNMGVIYKNRGDLESAIACYERCLAVSPNFE  259 (689)
Q Consensus       229 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  259 (689)
                      +..+.+++..|+...|...+++....+|...
T Consensus       200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  200 LKAILCHLAMGDYVAARKALERYCSQDPSFA  230 (282)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence            6778899999999999999999999988654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.09  E-value=7.6e-09  Score=90.34  Aligned_cols=105  Identities=20%  Similarity=0.232  Sum_probs=96.7

Q ss_pred             HHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005594          156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY  235 (689)
Q Consensus       156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  235 (689)
                      .+..++..|..|-..|-+.-|.--|.+++.+.|+.+++++.+|..+...|+++.|.+.|+..++++|..-.+..+.|..+
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence            35567788888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCcHH
Q 005594          236 KNRGDLESAIACYERCLAVSPNFEI  260 (689)
Q Consensus       236 ~~~g~~~~A~~~~~~al~~~~~~~~  260 (689)
                      .-.|++.-|.+.+.+..+.+|+++-
T Consensus       144 YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         144 YYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             eecCchHhhHHHHHHHHhcCCCChH
Confidence            9999999999999999999998874

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.08  E-value=6.9e-10  Score=83.09  Aligned_cols=67  Identities=43%  Similarity=0.691  Sum_probs=51.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 005594          367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG-SISLAIDAYEQCLKIDP  433 (689)
Q Consensus       367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p  433 (689)
                      ++.++..+|.++...|++++|+..|+++++++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            45677777777777777777777777777777777777777777777777 67777777777777776

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.07  E-value=5.6e-09  Score=94.05  Aligned_cols=124  Identities=18%  Similarity=0.218  Sum_probs=102.3

Q ss_pred             HhCCCHHHHHHHHHHHHHhCCCC--HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHH
Q 005594           59 RSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLV  133 (689)
Q Consensus        59 ~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~  133 (689)
                      +-.++|..+...+...++.++.+  ...++.+|.++...|++++|+..|++++.+.|+.   +.++..+|.++...|+++
T Consensus        10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~   89 (168)
T CHL00033         10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT   89 (168)
T ss_pred             ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence            44556777888887776666554  5678999999999999999999999999887653   458999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHH
Q 005594          134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE  182 (689)
Q Consensus       134 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~  182 (689)
                      +|+..+++++.+.|.....+..++.++..+|..+...|+++.|+..+.+
T Consensus        90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033         90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            9999999999999999998888888888888888788887755544433

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.04  E-value=1.6e-07  Score=103.04  Aligned_cols=224  Identities=16%  Similarity=0.117  Sum_probs=189.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH
Q 005594          207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV-SPNFEIAKNNMAIALTDLGTKVKLEGDINQG  285 (689)
Q Consensus       207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  285 (689)
                      -.+..+.|++.+..+|+..-.|........+.++.++|.+..++++.. ++...+-..++-.+|.++-..|   |.-+..
T Consensus      1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl 1516 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESL 1516 (1710)
T ss_pred             CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHH
Confidence            334566778888888998888888888888899999999999998864 4555555555555666554443   456667


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594          286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP  365 (689)
Q Consensus       286 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  365 (689)
                      .+.|+++.+... ....+..|..+|...+++++|.++|+..++........|..++..++.+++-+.|...+++|++.-|
T Consensus      1517 ~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1517 KKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred             HHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence            777888776543 2457888999999999999999999999999888899999999999999999999999999999988


Q ss_pred             C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594          366 N--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD  434 (689)
Q Consensus       366 ~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  434 (689)
                      .  +.+.....|.+-++.|+.+.+...|+-.+...|...+.|.-+...-.+.|+.+.++..|++++.+.=.
T Consensus      1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence            8  77888999999999999999999999999999999999999999999999999999999999987543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.04  E-value=6.9e-09  Score=93.45  Aligned_cols=104  Identities=22%  Similarity=0.325  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005594          335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL  411 (689)
Q Consensus       335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  411 (689)
                      ..++.+|.++...|++++|+..|++++.+.|+.   +.++.++|.++...|++++|+..+++++.++|.....+.++|.+
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i  115 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI  115 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            344555555555555555555555555444332   23455555555555555555555555555555555555555555


Q ss_pred             HH-------HcCCHH-------HHHHHHHHHHhcCCCChhh
Q 005594          412 YR-------DAGSIS-------LAIDAYEQCLKIDPDSRNA  438 (689)
Q Consensus       412 ~~-------~~g~~~-------~A~~~~~~al~~~p~~~~~  438 (689)
                      +.       .+|+++       +|+.+|++++..+|++...
T Consensus       116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~  156 (168)
T CHL00033        116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIE  156 (168)
T ss_pred             HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHH
Confidence            54       445544       6666777788888876543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.04  E-value=3.3e-09  Score=85.55  Aligned_cols=99  Identities=38%  Similarity=0.623  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005594          336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA  415 (689)
Q Consensus       336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  415 (689)
                      +++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|++.+++++...|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            45667777777788888888888888777777777778888888888888888888888888877777888888888888


Q ss_pred             CCHHHHHHHHHHHHhcCCC
Q 005594          416 GSISLAIDAYEQCLKIDPD  434 (689)
Q Consensus       416 g~~~~A~~~~~~al~~~p~  434 (689)
                      |++++|...++++++.+|+
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            8888888888888777763

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=8.5e-09  Score=96.34  Aligned_cols=121  Identities=21%  Similarity=0.143  Sum_probs=113.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 005594          281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECY  357 (689)
Q Consensus       281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~  357 (689)
                      ..+..+.-++..+..+|++.+-|..||.+|..+|+++.|...|.+++++.|++++.+..+|.++..+.   ...++...+
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            57777888899999999999999999999999999999999999999999999999999999887654   568899999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 005594          358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY  401 (689)
Q Consensus       358 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  401 (689)
                      +++++++|.+..+...||..+++.|++.+|...++..++..|.+
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999999999999999999998765

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.02  E-value=9e-09  Score=92.99  Aligned_cols=119  Identities=26%  Similarity=0.398  Sum_probs=95.3

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005594          298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL  374 (689)
Q Consensus       298 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  374 (689)
                      .....++.+|..+...|++++|+.+|+++++..|+.   ..++..+|.++...|++++|+.+++++++..|++...+..+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            345577888888888888888888888888776553   46788888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005594          375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR  436 (689)
Q Consensus       375 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  436 (689)
                      |.++...|+...+...+++++.                    .+++|+++++++++++|++.
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence            8888888887777766665542                    26788899999999998874

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.02  E-value=1.8e-08  Score=96.15  Aligned_cols=107  Identities=20%  Similarity=0.203  Sum_probs=97.9

Q ss_pred             CchhhHHHHHHHH-HhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCC---CHHH
Q 005594           46 FEGKDALSYANIL-RSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NACA  118 (689)
Q Consensus        46 ~~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~  118 (689)
                      .+....+..|..+ +..|+|++|+..|++.++..|++   +.+++.+|.+|+..|++++|+..|+++++..|+   .+++
T Consensus       140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence            4567888888887 67899999999999999999997   589999999999999999999999999998887   4788


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 005594          119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPA  152 (689)
Q Consensus       119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  152 (689)
                      ++.+|.++...|++++|...|+++++..|+...+
T Consensus       220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            9999999999999999999999999999997654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.00  E-value=9.1e-08  Score=83.75  Aligned_cols=202  Identities=18%  Similarity=0.196  Sum_probs=134.7

Q ss_pred             CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005594           81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL  160 (689)
Q Consensus        81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~  160 (689)
                      .+..++..|..|-..|-..-|.-.|.+++.+.|+-+.++..+|..+...|+++.|.+.|...++++|.+.-+       .
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya-------~  136 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-------H  136 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHH-------H
Confidence            356778888888888989999999999999999999999999999999999999999999999999987665       5


Q ss_pred             HHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHcC
Q 005594          161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE-KAALERPMYAEAYCNMGVIYKNRG  239 (689)
Q Consensus       161 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~p~~~~~~~~la~~~~~~g  239 (689)
                      .+.|..++.-|++.-|.+-+.+-.+.+|+++---..+- +-...-+..+|...+. ++...+ +....|......   .|
T Consensus       137 lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY-l~E~k~dP~~A~tnL~qR~~~~d-~e~WG~~iV~~y---Lg  211 (297)
T COG4785         137 LNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY-LNEQKLDPKQAKTNLKQRAEKSD-KEQWGWNIVEFY---LG  211 (297)
T ss_pred             hccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH-HHHhhCCHHHHHHHHHHHHHhcc-HhhhhHHHHHHH---Hh
Confidence            56666677778999999988888888888764322221 1123345666655444 333332 222233222222   22


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh
Q 005594          240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY  295 (689)
Q Consensus       240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  295 (689)
                      +..+ ...++++..-..++...-..+..+++-+|+.+...|+.++|...|+-++..
T Consensus       212 kiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         212 KISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             hccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            2221 233444444444544444455566666666666666666666666666544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.00  E-value=2.8e-08  Score=86.80  Aligned_cols=117  Identities=23%  Similarity=0.188  Sum_probs=95.2

Q ss_pred             hcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHH
Q 005594          312 EMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMD  385 (689)
Q Consensus       312 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~  385 (689)
                      ..++...+...++..++.+|+.   ..+.+.+|.++...|++++|+..|++++...|+.   ..+...++.++...|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            5778888888888888888887   5667788889999999999999999998877554   347788899999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594          386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL  429 (689)
Q Consensus       386 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  429 (689)
                      +|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus       103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            99998866 33344456788889999999999999999998875

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.99  E-value=2e-09  Score=80.57  Aligned_cols=67  Identities=36%  Similarity=0.602  Sum_probs=48.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 005594          333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANP  399 (689)
Q Consensus       333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p  399 (689)
                      ++..|..+|.++...|++++|+.+|+++++++|+++.++.++|.++..+| ++++|++.++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            45667777777777777777777777777777777777777777777777 57777777777777665

...

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.99  E-value=3.8e-07  Score=100.18  Aligned_cols=224  Identities=12%  Similarity=0.032  Sum_probs=179.2

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhHHHHHHcCChHHH
Q 005594           98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQDG  176 (689)
Q Consensus        98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A  176 (689)
                      -.+..+.|++.+..+|+....|..+...+.+.++.++|.+..++++.. ++...+-..++-.++.++   ...-|.-+.-
T Consensus      1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNl---En~yG~eesl 1516 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNL---ENAYGTEESL 1516 (1710)
T ss_pred             CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhH---HHhhCcHHHH
Confidence            344567788999999999999999999999999999999999999974 555444443333334444   3344667777


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594          177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP  256 (689)
Q Consensus       177 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  256 (689)
                      .+.|+++.+.. +...++..|..+|...+++++|.++++..++...+....|..++..++++++-+.|...+.+|++.-|
T Consensus      1517 ~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1517 KKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred             HHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence            88888888753 33567889999999999999999999999999888899999999999999999999999999999998


Q ss_pred             CcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005594          257 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN  330 (689)
Q Consensus       257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  330 (689)
                      ....     .......+.+.++.|+.+.+..+|+..+..+|...+.|.-+...-.+.|+.+.+..+|++++.+.
T Consensus      1596 k~eH-----v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1596 KQEH-----VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             hhhh-----HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            8321     12334445555667788888888888888888888888888888888888888888888887763

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.99  E-value=2.4e-08  Score=104.98  Aligned_cols=144  Identities=22%  Similarity=0.192  Sum_probs=119.1

Q ss_pred             hhCCCCHHHH--HHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHH
Q 005594          294 YYNWHYADAM--YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD--------NLDKAVECYQMA  360 (689)
Q Consensus       294 ~~~~~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~a  360 (689)
                      ...|.+..+|  +..|.-+...+.   ..+|+.+|+++++++|+++.++..++.++....        +..++.+..+++
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            3345565554  445655555444   789999999999999999999998888775542        345666777776


Q ss_pred             Hhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005594          361 LSI--KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA  438 (689)
Q Consensus       361 l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  438 (689)
                      +.+  +|.++.++..+|..+...|++++|...+++++.++|+ ..+|..+|.++...|+.++|++.|++|+.++|.++..
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence            664  7777889999999999999999999999999999994 8899999999999999999999999999999998853

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=7.4e-07  Score=81.01  Aligned_cols=168  Identities=14%  Similarity=0.040  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 005594          191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT  270 (689)
Q Consensus       191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  270 (689)
                      ......-|.++...+++++|++...+.     .+.++...-..++.++.+.+-|.+.++++.+++.+.  ....++.+|.
T Consensus       108 ~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv  180 (299)
T KOG3081|consen  108 LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWV  180 (299)
T ss_pred             HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHH
Confidence            345555677888888999988887763     345666666778888888999999988888776543  4445666666


Q ss_pred             HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 005594          271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL  350 (689)
Q Consensus       271 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  350 (689)
                      .++.   ..+.+.+|.-+|++.-+..+..+..+...+.+...+|+|++|...++.++..++++++.+.++..+-...|..
T Consensus       181 ~la~---ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  181 KLAT---GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             HHhc---cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence            6542   1334667777777776666666667777777777777777777777777777777777777776666666665


Q ss_pred             HHHHH-HHHHHHhcCCCCH
Q 005594          351 DKAVE-CYQMALSIKPNFS  368 (689)
Q Consensus       351 ~~A~~-~~~~al~~~p~~~  368 (689)
                      .++.. .+.+....+|+++
T Consensus       258 ~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  258 AEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             hHHHHHHHHHHHhcCCcch
Confidence            44443 3344444455543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.98  E-value=3.6e-10  Score=105.19  Aligned_cols=107  Identities=19%  Similarity=0.159  Sum_probs=100.0

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 005594           51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG  130 (689)
Q Consensus        51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  130 (689)
                      +-+.|+.|+++|+|++|+++|.+.+..+|.|+..+.+.+.+|++...+..|...+..++.++.....+|...+..-..+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005594          131 RLVEAAESYHKALSADPSYKPAAECLA  157 (689)
Q Consensus       131 ~~~~A~~~~~~al~~~p~~~~~~~~~a  157 (689)
                      +..+|.+.++.++++.|++.+....++
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a  206 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLA  206 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence            999999999999999999877544433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.98  E-value=1.7e-06  Score=83.46  Aligned_cols=224  Identities=31%  Similarity=0.410  Sum_probs=165.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHhhHHHHHHHhhhhhhhc
Q 005594          204 LMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLA--VSPNFEIAKNNMAIALTDLGTKVKLE  279 (689)
Q Consensus       204 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~l~~~~~~~  279 (689)
                      .+.+..+...+...+...+.  ........+..+...+++..+...+...+.  ..+...       ..+...+......
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  108 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA-------EALLNLGLLLEAL  108 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH-------HHHHHHHHHHHHH
Confidence            34555555666666555554  355666666666777777777776666665  333332       2333334444444


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHH
Q 005594          280 GDINQGVAYYKKALYYNWHYADAMYNLGV-AYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVE  355 (689)
Q Consensus       280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~  355 (689)
                      +++.+++..+..++...+.........+. ++...|+++.|...+++++...|   .........+..+...+++++|+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  188 (291)
T COG0457         109 GKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE  188 (291)
T ss_pred             hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence            56777777777777666655444445555 78889999999999999888666   356666777777888889999999


Q ss_pred             HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594          356 CYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD  434 (689)
Q Consensus       356 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  434 (689)
                      .+.+++...+. ....+..++..+...+++++|...+..++...|.....+..++..+...++.+++...+.+++...|.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            99999999888 68889999999999999999999999999999887777888888888778899999999999999987

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.98  E-value=8.1e-09  Score=83.22  Aligned_cols=99  Identities=31%  Similarity=0.432  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 005594           50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE  129 (689)
Q Consensus        50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  129 (689)
                      .++.+|..+...|++++|+..++++++..|.+..++..+|.++...+++++|++.+++++...|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCC
Q 005594          130 GRLVEAAESYHKALSADPS  148 (689)
Q Consensus       130 g~~~~A~~~~~~al~~~p~  148 (689)
                      |++++|...+.++++..|.
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999987763

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.97  E-value=3.7e-06  Score=81.00  Aligned_cols=228  Identities=32%  Similarity=0.454  Sum_probs=119.6

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCH
Q 005594          130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK--IDPHYAPAYYNLGVVYSELMQY  207 (689)
Q Consensus       130 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~  207 (689)
                      +.+..+...+...+...+..     .........+..+...+.+..+...+...+.  ..+.....+...+..+...+++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (291)
T COG0457          37 GELAEALELLEEALELLPNS-----DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY  111 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccc-----cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhH
Confidence            44444445555544444432     0011134444555555666666666655554  4555566666666666666666


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHH
Q 005594          208 DTALGCYEKAALERPMYAEAYCNMGV-IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV  286 (689)
Q Consensus       208 ~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  286 (689)
                      ..++..+.+++...+.........+. ++...|++++|...+.+++...|.    ..                       
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~-----------------------  164 (291)
T COG0457         112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPE----LN-----------------------  164 (291)
T ss_pred             HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----cc-----------------------
Confidence            66666666666655554344444444 566666666666666666554432    00                       


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594          287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CAEACNNLGVIYKDRDNLDKAVECYQMALSIKP  365 (689)
Q Consensus       287 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  365 (689)
                                 .........+..+...++++.|+..+.+++...+. ....+..++..+...+++++|+..+.+++...|
T Consensus       165 -----------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  233 (291)
T COG0457         165 -----------ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP  233 (291)
T ss_pred             -----------chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence                       11222222333344445555555555555555555 455555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594          366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT  400 (689)
Q Consensus       366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  400 (689)
                      .....+..++..+...+.++++...+.+++...|.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         234 DNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            54445555555555445566666666666655554

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=2.4e-05  Score=77.12  Aligned_cols=384  Identities=13%  Similarity=0.068  Sum_probs=226.9

Q ss_pred             hhhHHHHHHHHHhCC--CHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHH-HhCCHHHHHHHHHHHHHcCC---CC---
Q 005594           48 GKDALSYANILRSRN--KFVDALALYEIVLEKDSGN---VEAHIGKGICLQ-MQNMGRLAFDSFSEAVKLDP---QN---  115 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p---~~---  115 (689)
                      +..++.+|+.+...|  +...++++++..+...|.+   +.....+|.+++ ...+.+.|...++++..+..   ..   
T Consensus         7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv   86 (629)
T KOG2300|consen    7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV   86 (629)
T ss_pred             HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence            456778888888888  8888888888888776653   345666666644 56788888888888876532   22   


Q ss_pred             -HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHH----------
Q 005594          116 -ACAHTHCGILYKDEG-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA----------  183 (689)
Q Consensus       116 -~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~a----------  183 (689)
                       ..+...++.+|.... .+..|...+++++++..+.+-.   -...+..++....-..++..|++.+.--          
T Consensus        87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w---sckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~  163 (629)
T KOG2300|consen   87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW---SCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFP  163 (629)
T ss_pred             hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh---hHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhH
Confidence             345666777777766 7788888888888877665532   1334566666666667777666653211          


Q ss_pred             ---------------------------------Hhh---CCCCH----HHHHHHHH-HHHHcCCHHHHHHHHHHHHH---
Q 005594          184 ---------------------------------LKI---DPHYA----PAYYNLGV-VYSELMQYDTALGCYEKAAL---  219 (689)
Q Consensus       184 ---------------------------------l~~---~~~~~----~~~~~la~-~~~~~g~~~~A~~~~~~al~---  219 (689)
                                                       .+.   +|.+-    ..+..+-. .|...|+...+...+++.-+   
T Consensus       164 ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siq  243 (629)
T KOG2300|consen  164 YLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQ  243 (629)
T ss_pred             HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHh
Confidence                                             110   11110    11111211 23344555555555443321   


Q ss_pred             -hCCC------------CH-----------HHHHHHHH--HHHHcCCHHHHHHHHHHHHhcCCCcH-------HHHhhHH
Q 005594          220 -ERPM------------YA-----------EAYCNMGV--IYKNRGDLESAIACYERCLAVSPNFE-------IAKNNMA  266 (689)
Q Consensus       220 -~~p~------------~~-----------~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~  266 (689)
                       +.+.            .+           .++..+-.  .-...|-+++|.++-++++....+..       .......
T Consensus       244 tist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km  323 (629)
T KOG2300|consen  244 TISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKM  323 (629)
T ss_pred             ccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence             1110            00           01111111  11234566777777777665422211       1111112


Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHhhC---CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-C--
Q 005594          267 IALTDLGTKVKLEGDINQGVAYYKKALYYN---WH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-C--  333 (689)
Q Consensus       267 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~--  333 (689)
                      ..+..+..+..-.|++.+|++....+.+..   |.       .+.+...+|......+.++.|...|..+.+.... +  
T Consensus       324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~  403 (629)
T KOG2300|consen  324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ  403 (629)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence            223334444455788888887777666543   33       2345667777777888888888888888776433 2  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Q 005594          334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---  400 (689)
Q Consensus       334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---  400 (689)
                      +....++|.+|...|+-+.--+.++.   +.|.+          ..+++..|...+.++++.||...+.+.++....   
T Consensus       404 a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~  480 (629)
T KOG2300|consen  404 AFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDL  480 (629)
T ss_pred             HHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhH
Confidence            33456778888887765544433333   33332          235666777778888888888888888877521   


Q ss_pred             ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 005594          401 ---YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN  437 (689)
Q Consensus       401 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  437 (689)
                         .+..+..|+.+....|+..++.+..+-++++....++
T Consensus       481 ~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D  520 (629)
T KOG2300|consen  481 NRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD  520 (629)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence               1334566788888888888888888877776544443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=2.1e-08  Score=97.05  Aligned_cols=73  Identities=23%  Similarity=0.335  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhH
Q 005594          370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR  442 (689)
Q Consensus       370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  442 (689)
                      ++.|++.|+.+++++.+|+....++|+++|+|..+++..|.++..+|+++.|+..|+++++++|+|..+...+
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el  331 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAEL  331 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            4555666666666666666666666666666666666666666666666666666666666666665554443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.96  E-value=2.9e-09  Score=78.48  Aligned_cols=65  Identities=29%  Similarity=0.366  Sum_probs=49.4

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH
Q 005594           52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA  116 (689)
Q Consensus        52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  116 (689)
                      +.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            35677778888888888888888888888888888888888888888888888888887777764

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.96  E-value=2.2e-09  Score=83.79  Aligned_cols=82  Identities=26%  Similarity=0.306  Sum_probs=73.5

Q ss_pred             hCCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005594           60 SRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE  137 (689)
Q Consensus        60 ~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  137 (689)
                      .+|+|++|+..++++++.+|.  +...++.+|.|+++.|++++|+..+++ .+.++.+....+.+|.++..+|++++|++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            368999999999999999995  466788899999999999999999999 88888888999999999999999999999


Q ss_pred             HHHHH
Q 005594          138 SYHKA  142 (689)
Q Consensus       138 ~~~~a  142 (689)
                      .++++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.95  E-value=3e-09  Score=78.40  Aligned_cols=64  Identities=31%  Similarity=0.490  Sum_probs=43.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005594          373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR  436 (689)
Q Consensus       373 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  436 (689)
                      .+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4566666777777777777777777777777777777777777777777777777777777653

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.95  E-value=3.4e-08  Score=89.22  Aligned_cols=72  Identities=26%  Similarity=0.381  Sum_probs=44.0

Q ss_pred             CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 005594           81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA  152 (689)
Q Consensus        81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  152 (689)
                      ...+++.+|..+...|++++|+.+|+++++..|+.   ..++..+|.++...|++++|+..+++++...|.+...
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  108 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA  108 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence            44456666666666666666666666666554432   3456666666666666666666666666666665554

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.94  E-value=6.9e-08  Score=89.23  Aligned_cols=107  Identities=19%  Similarity=0.127  Sum_probs=99.2

Q ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHH
Q 005594           47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHT  120 (689)
Q Consensus        47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~  120 (689)
                      +++..+..|..++..|+|.+|...|...++..|++   +.+++.||.+++.+|++++|...|..+.+..|++   +++++
T Consensus       140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall  219 (262)
T COG1729         140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL  219 (262)
T ss_pred             chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence            45669999999999999999999999999999985   5899999999999999999999999999987764   68899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005594          121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAA  153 (689)
Q Consensus       121 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  153 (689)
                      .+|.+...+|+.++|...|+++++..|+...+.
T Consensus       220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            999999999999999999999999999987763

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.93  E-value=1.3e-06  Score=90.82  Aligned_cols=313  Identities=17%  Similarity=0.167  Sum_probs=192.3

Q ss_pred             hhHHHHHHHHHhCCCHHHHHHHHH------------HHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH
Q 005594           49 KDALSYANILRSRNKFVDALALYE------------IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA  116 (689)
Q Consensus        49 ~~~~~~a~~~~~~g~~~~A~~~~~------------~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  116 (689)
                      ..|-.+|.+..+..+.+-|.-++-            ++.+ +|+  +.-...|.....+|..++|+.+|++.-+.     
T Consensus       758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~-----  829 (1416)
T KOG3617|consen  758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAIELGMLEEALILYRQCKRY-----  829 (1416)
T ss_pred             HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence            346677888877777776665543            3222 333  33344566677899999999999987553     


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHH----------Hhh
Q 005594          117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA----------LKI  186 (689)
Q Consensus       117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~a----------l~~  186 (689)
                         -.+-..|...|.+++|.+..+.-=.+.         +-..|++.+..+...++.+.|+++|+++          +..
T Consensus       830 ---DLlNKlyQs~g~w~eA~eiAE~~DRiH---------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e  897 (1416)
T KOG3617|consen  830 ---DLLNKLYQSQGMWSEAFEIAETKDRIH---------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE  897 (1416)
T ss_pred             ---HHHHHHHHhcccHHHHHHHHhhcccee---------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh
Confidence               355667888888888887765432222         2233777788888888888888888764          222


Q ss_pred             CCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------hCCCCHHHHHHHHHHH
Q 005594          187 DPH----------YAPAYYNLGVVYSELMQYDTALGCYEKAAL---------------------ERPMYAEAYCNMGVIY  235 (689)
Q Consensus       187 ~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------------------~~p~~~~~~~~la~~~  235 (689)
                      +|.          +...|...|..+...|+.+.|+.+|..+-.                     ....+..+.+.+|..|
T Consensus       898 ~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~Y  977 (1416)
T KOG3617|consen  898 YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMY  977 (1416)
T ss_pred             ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHh
Confidence            332          355667778888899999999999988743                     2345667889999999


Q ss_pred             HHcCCHHHHHHHHHHHHhc------CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005594          236 KNRGDLESAIACYERCLAV------SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA  309 (689)
Q Consensus       236 ~~~g~~~~A~~~~~~al~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  309 (689)
                      ...|+..+|+..|.++-..      ...+... ..+......     ....+.-.|..+|++.-       .....-..+
T Consensus       978 En~g~v~~Av~FfTrAqafsnAIRlcKEnd~~-d~L~nlal~-----s~~~d~v~aArYyEe~g-------~~~~~AVmL 1044 (1416)
T KOG3617|consen  978 ENDGDVVKAVKFFTRAQAFSNAIRLCKENDMK-DRLANLALM-----SGGSDLVSAARYYEELG-------GYAHKAVML 1044 (1416)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHhh-----cCchhHHHHHHHHHHcc-------hhhhHHHHH
Confidence            9999999999998876432      2221100 011110000     01123333333443321       011112234


Q ss_pred             HHhcCCHHHHHHHHHH-----HH-----hhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH------HHhcC--------
Q 005594          310 YGEMLKFDMAIVFYEL-----AF-----HFNP-HCAEACNNLGVIYKDRDNLDKAVECYQM------ALSIK--------  364 (689)
Q Consensus       310 ~~~~g~~~~A~~~~~~-----al-----~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~--------  364 (689)
                      |.+.|.+.+|+++--+     ++     .+++ .++..+..-+..+....+|++|..++-.      |+.+.        
T Consensus      1045 YHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vt 1124 (1416)
T KOG3617|consen 1045 YHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVT 1124 (1416)
T ss_pred             HHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Confidence            4445555555543211     11     1233 3577777777888888888888765443      33331        


Q ss_pred             --------CCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          365 --------PNF---------SQSLNNLGVVYTVQGKMDAAAEMIEKA  394 (689)
Q Consensus       365 --------p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a  394 (689)
                              |..         ..++..+|.++.++|.|..|-+-|.+|
T Consensus      1125 ee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1125 EEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             HHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence                    111         237788999999999998887777665

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.93  E-value=2.8e-09  Score=83.18  Aligned_cols=81  Identities=28%  Similarity=0.420  Sum_probs=54.3

Q ss_pred             cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005594          347 RDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA  424 (689)
Q Consensus       347 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  424 (689)
                      +|++++|+.+++++++..|.  +...++.+|.++++.|++++|+..+++ .+.++.+....+.+|.++..+|++++|++.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            46677777777777777664  344566667777777777777777777 666666666666777777777777777777


Q ss_pred             HHHH
Q 005594          425 YEQC  428 (689)
Q Consensus       425 ~~~a  428 (689)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            7654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.93  E-value=5.7e-08  Score=84.90  Aligned_cols=129  Identities=16%  Similarity=0.057  Sum_probs=106.3

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHH
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTH  121 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~  121 (689)
                      +...+..+......++...+...++++++.+|+.   ..+.+.+|.+++..|++++|...|++++...|+.   ..+.+.
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            4556777777778999999999999999999988   5678889999999999999999999999987654   457888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHH
Q 005594          122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL  184 (689)
Q Consensus       122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al  184 (689)
                      ++.++...|++++|+..++.. .  +...     .+.+...+|.++...|++++|+..|++++
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~-~--~~~~-----~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQI-P--DEAF-----KALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc-c--Ccch-----HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            999999999999999999662 1  1111     13346678889999999999999988764

>PRK15331 chaperone protein SicA; Provisional

Probab=98.93  E-value=2.2e-08  Score=85.28  Aligned_cols=107  Identities=11%  Similarity=0.028  Sum_probs=99.4

Q ss_pred             cccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 005594           43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC  122 (689)
Q Consensus        43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  122 (689)
                      .....-+..+..|..++.+|++++|..+|+-+...+|.+++.++.+|.|+..+++|++|+..|..+..++++++...+..
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a  111 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT  111 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence            34456778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005594          123 GILYKDEGRLVEAAESYHKALSADPSYK  150 (689)
Q Consensus       123 a~~~~~~g~~~~A~~~~~~al~~~p~~~  150 (689)
                      |.|+...|+.++|+..|+.++. .|.+.
T Consensus       112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331        112 GQCQLLMRKAAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence            9999999999999999999998 45533

>PRK11906 transcriptional regulator; Provisional

Probab=98.92  E-value=1e-07  Score=94.83  Aligned_cols=160  Identities=9%  Similarity=0.008  Sum_probs=106.1

Q ss_pred             hHHHHHHHHHhCC---CHHHHHHHHHHHH---HhCCCCHHHHHhHHHHHHHh---------CCHHHHHHHHHHHHHcCCC
Q 005594           50 DALSYANILRSRN---KFVDALALYEIVL---EKDSGNVEAHIGKGICLQMQ---------NMGRLAFDSFSEAVKLDPQ  114 (689)
Q Consensus        50 ~~~~~a~~~~~~g---~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~  114 (689)
                      .++..|...+..+   ..+.|+.+|.+++   +.+|..+.++..++.|++..         .+..+|.+..+++++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            4566777766655   3567778888888   77888888888888887654         1345667777777777777


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 005594          115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY  194 (689)
Q Consensus       115 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  194 (689)
                      ++.++..+|.++...++++.|...|++++.++|+...+       ++..|......|+.++|.+.++++++++|....+-
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~-------~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~  409 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL-------YYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV  409 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence            77777777777777777777777777777777776554       55556666666777777777777777777654333


Q ss_pred             HHHHHH-HHHcCCHHHHHHHHHH
Q 005594          195 YNLGVV-YSELMQYDTALGCYEK  216 (689)
Q Consensus       195 ~~la~~-~~~~g~~~~A~~~~~~  216 (689)
                      ...-.+ .+-....++|++.|-+
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~  432 (458)
T PRK11906        410 VIKECVDMYVPNPLKNNIKLYYK  432 (458)
T ss_pred             HHHHHHHHHcCCchhhhHHHHhh
Confidence            322222 3334455556555544

>PRK11906 transcriptional regulator; Provisional

Probab=98.91  E-value=1.2e-07  Score=94.43  Aligned_cols=148  Identities=15%  Similarity=0.098  Sum_probs=120.6

Q ss_pred             HHHHHHHHhcCC---HHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCH
Q 005594          304 YNLGVAYGEMLK---FDMAIVFYELAF---HFNPHCAEACNNLGVIYKDR---------DNLDKAVECYQMALSIKPNFS  368 (689)
Q Consensus       304 ~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~  368 (689)
                      +..|......+.   .+.|+.+|.+++   .++|+.+.++..++.++...         ....+|.+..+++++++|.++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            445555544443   467888888888   88888888888888887654         245678899999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhh
Q 005594          369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY  448 (689)
Q Consensus       369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  448 (689)
                      .++..+|.++...++++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|....+..-.+..-.|
T Consensus       339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~  418 (458)
T PRK11906        339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY  418 (458)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999876665443333244


Q ss_pred             ccC
Q 005594          449 INE  451 (689)
Q Consensus       449 ~~~  451 (689)
                      ...
T Consensus       419 ~~~  421 (458)
T PRK11906        419 VPN  421 (458)
T ss_pred             cCC
Confidence            433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=3.3e-08  Score=95.70  Aligned_cols=132  Identities=21%  Similarity=0.213  Sum_probs=106.2

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----C-----------HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcC
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIVLEKDSG----N-----------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLD  112 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  112 (689)
                      +...-..|+.+++.|+|..|...|++++..-..    +           ..++.+++.|+.++++|.+|+..+.++|..+
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~  287 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD  287 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            344566789999999999999999998875321    1           2478899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCCh-HHHHHHHHHHHhh
Q 005594          113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT-QDGIQKYYEALKI  186 (689)
Q Consensus       113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~-~~A~~~~~~al~~  186 (689)
                      |+|..+++..|.++...|+++.|+..|++++++.|+|..+...+..+       ..+...+ +...+.|..++..
T Consensus       288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l-------~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL-------KQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999998774443332       2222222 3335566666654

>PRK15331 chaperone protein SicA; Provisional

Probab=98.91  E-value=2e-08  Score=85.57  Aligned_cols=100  Identities=10%  Similarity=0.024  Sum_probs=64.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005594          331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV  410 (689)
Q Consensus       331 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  410 (689)
                      ++..+..+..|.-++..|++++|...|+-....+|.+++.+..||.++..++++++|+..|..+..++++++...+..|.
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq  113 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ  113 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence            33445555666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHh
Q 005594          411 LYRDAGSISLAIDAYEQCLK  430 (689)
Q Consensus       411 ~~~~~g~~~~A~~~~~~al~  430 (689)
                      |+..+|+.++|+.+|+.+++
T Consensus       114 C~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        114 CQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHHHhCCHHHHHHHHHHHHh
Confidence            66666666666666666665

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.89  E-value=8.8e-07  Score=81.15  Aligned_cols=191  Identities=16%  Similarity=0.141  Sum_probs=136.9

Q ss_pred             ccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH---H
Q 005594           44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---C  117 (689)
Q Consensus        44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~  117 (689)
                      ....+..++..|...++.|+|++|++.|+++....|.+   ..+.+.++.++++.+++++|+..+++.+++.|.++   .
T Consensus        30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY  109 (254)
T COG4105          30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY  109 (254)
T ss_pred             cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence            34578899999999999999999999999999988865   47899999999999999999999999999998765   4


Q ss_pred             HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005594          118 AHTHCGILYKDE--------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH  189 (689)
Q Consensus       118 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  189 (689)
                      +++..|.+++..        .-..+|+..|+..+...|++.-+....                  .=+..+...+     
T Consensus       110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~------------------~~i~~~~d~L-----  166 (254)
T COG4105         110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAK------------------ARIVKLNDAL-----  166 (254)
T ss_pred             HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHH------------------HHHHHHHHHH-----
Confidence            677777776642        234567888889999999865331111                  1111111111     


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 005594          190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF  258 (689)
Q Consensus       190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  258 (689)
                       +.--..+|..|.+.|.+-.|+..++.+++..|+.   .+++..+..+|..+|-.++|.+.-.-.-...|++
T Consensus       167 -A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         167 -AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             -HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence             2223456777777777777777777777765543   4566667777777777777766554444444444

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.89  E-value=1.1e-05  Score=77.31  Aligned_cols=294  Identities=15%  Similarity=0.043  Sum_probs=187.1

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Q 005594           51 ALSYANILRSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-ACAHTHCGILYK  127 (689)
Q Consensus        51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~  127 (689)
                      -+..|.+....|+-..|.+.-.+.-+.-..+  +-++..-++.-+..|+++.|.+-|+.++. +|.. ...+..+-.-..
T Consensus        87 ALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAq  165 (531)
T COG3898          87 ALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQ  165 (531)
T ss_pred             HHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHH
Confidence            3445666677788899998888876543333  44566667788889999999999998774 3322 122333333445


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC---CCC-----HHHHHHHHH
Q 005594          128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PHY-----APAYYNLGV  199 (689)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~-----~~~~~~la~  199 (689)
                      ..|..+.|+.+-+.+-...|...-+.       ...-......|+++.|+++.+......   ++.     ...+...+.
T Consensus       166 r~GareaAr~yAe~Aa~~Ap~l~WA~-------~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~  238 (531)
T COG3898         166 RLGAREAARHYAERAAEKAPQLPWAA-------RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM  238 (531)
T ss_pred             hcccHHHHHHHHHHHHhhccCCchHH-------HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence            68999999999999999999876653       223334566799999999987765442   221     111222222


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhc
Q 005594          200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE  279 (689)
Q Consensus       200 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~  279 (689)
                      ... ..+...|...-.++.++.|+....-..-+..+++.|+..++-.+++.+.+..|.-.     ++..|...     +.
T Consensus       239 s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-----ia~lY~~a-----r~  307 (531)
T COG3898         239 SLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-----IALLYVRA-----RS  307 (531)
T ss_pred             HHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-----HHHHHHHh-----cC
Confidence            222 23577788888888888888888888888888888888888888888888777532     12222211     11


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594          280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM  359 (689)
Q Consensus       280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  359 (689)
                      |+  .++.-+++                               .++...+.|++.+.....+..-+..|++..|..--+.
T Consensus       308 gd--ta~dRlkR-------------------------------a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aea  354 (531)
T COG3898         308 GD--TALDRLKR-------------------------------AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEA  354 (531)
T ss_pred             CC--cHHHHHHH-------------------------------HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            11  11111111                               2223344566666666666666666777777666666


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 005594          360 ALSIKPNFSQSLNNLGVVYTVQ-GKMDAAAEMIEKAIAA  397 (689)
Q Consensus       360 al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  397 (689)
                      +....|.. .++..|+.+-... |+-.+...++-++++-
T Consensus       355 a~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         355 AAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            66666653 3445556655543 7777777777777764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.88  E-value=6.3e-08  Score=92.39  Aligned_cols=106  Identities=25%  Similarity=0.343  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHH
Q 005594          334 AEACNNLGVIY-KDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYN  406 (689)
Q Consensus       334 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~  406 (689)
                      ....+..+..+ .+.|++++|+..|++.++..|+.   +.+++.+|.+|+..|++++|+..|+++++..|++   +++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            45555566554 55688888888888888888877   4688888888888888888888888888877764   67888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhH
Q 005594          407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG  439 (689)
Q Consensus       407 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  439 (689)
                      .+|.++..+|++++|...|+++++..|+...+.
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            888888888888888888888888888876543

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.88  E-value=9.2e-05  Score=73.19  Aligned_cols=348  Identities=11%  Similarity=0.033  Sum_probs=207.4

Q ss_pred             HHHHHhHHHHHHHhC--CHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005594           82 VEAHIGKGICLQMQN--MGRLAFDSFSEAVKLDPQN---ACAHTHCGILYK-DEGRLVEAAESYHKALSADPSYKPAAEC  155 (689)
Q Consensus        82 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~  155 (689)
                      ..++..+|..+...|  +...++++++..+...|..   +.....+|.+++ ...+.+.|...++++..+...-+..+..
T Consensus         7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv   86 (629)
T KOG2300|consen    7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV   86 (629)
T ss_pred             HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence            356778888888888  8899999999999887764   445677776654 5789999999999998776554444444


Q ss_pred             HHHHHHHhHHHHHHcC-ChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HH
Q 005594          156 LAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AE  226 (689)
Q Consensus       156 ~a~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~  226 (689)
                      .-.....++.++.... .+..+...+.+++++....+    ...+.+++++.-..++..|++.+.--.+....-    ..
T Consensus        87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr  166 (629)
T KOG2300|consen   87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLR  166 (629)
T ss_pred             hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHH
Confidence            4455666777777766 88999999999999977654    456788999999999999988854322111100    11


Q ss_pred             HHHHH--HHHHHHcCCHHH---HHHHHHHHHhcCCCcHHHHhhHHHHHHHh-----------------------------
Q 005594          227 AYCNM--GVIYKNRGDLES---AIACYERCLAVSPNFEIAKNNMAIALTDL-----------------------------  272 (689)
Q Consensus       227 ~~~~l--a~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~~~~~~~~l-----------------------------  272 (689)
                      ..+.+  +.++...-+..+   +.....+..+....++.-...+-..|..+                             
T Consensus       167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis  246 (629)
T KOG2300|consen  167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS  246 (629)
T ss_pred             HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence            11111  122222222222   22222222222111111111110111000                             


Q ss_pred             -----------------------------------hhhhhhcCCHHHHHHHHHHHHhhCCC------CH--------HHH
Q 005594          273 -----------------------------------GTKVKLEGDINQGVAYYKKALYYNWH------YA--------DAM  303 (689)
Q Consensus       273 -----------------------------------~~~~~~~~~~~~A~~~~~~al~~~~~------~~--------~~~  303 (689)
                                                         -..-...|-+++|.++-++++....+      ..        ..+
T Consensus       247 t~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~L  326 (629)
T KOG2300|consen  247 TSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILL  326 (629)
T ss_pred             CCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence                                               00011234555666665555543211      11        123


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHH
Q 005594          304 YNLGVAYGEMLKFDMAIVFYELAFHF---NPH-------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQS  370 (689)
Q Consensus       304 ~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~  370 (689)
                      -.+..+-.-.|++.+|++....+.+.   .|.       .+.+...+|.....-+.++.|...|..|.++....   +-+
T Consensus       327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~  406 (629)
T KOG2300|consen  327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC  406 (629)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            34455556677777777777666554   233       24556667777777778888888888887764322   234


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594          371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----------AEAYNNLGVLYRDAGSISLAIDAYEQCLKID  432 (689)
Q Consensus       371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  432 (689)
                      ..++|..|.+.|+-+.-.+.++   .+.|.+          ..+++..|...+.++++.||...+++.++..
T Consensus       407 nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  407 NLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            5677888888766544333333   234432          3466777777888888888888888888775

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=2.1e-06  Score=78.20  Aligned_cols=256  Identities=16%  Similarity=0.099  Sum_probs=169.4

Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005594          166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI  245 (689)
Q Consensus       166 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  245 (689)
                      -++..|+|..++..-++.-... ...+....+.+.|..+|++...+.-....-   .....+...++.....-++.++-+
T Consensus        17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~   92 (299)
T KOG3081|consen   17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSIL   92 (299)
T ss_pred             HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHH
Confidence            3445588888877766654433 667777788888888888776555443321   122344455555555555555555


Q ss_pred             HHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005594          246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL  325 (689)
Q Consensus       246 ~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  325 (689)
                      .-+.+.+........     ......-+.++...+++++|+......     .+.++...-..++.++.+++-|.+.+++
T Consensus        93 ~~l~E~~a~~~~~sn-----~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~  162 (299)
T KOG3081|consen   93 ASLYELVADSTDGSN-----LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKK  162 (299)
T ss_pred             HHHHHHHHhhccchh-----HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444443332221111     112223345556678888888877663     2445666666778888888888888888


Q ss_pred             HHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 005594          326 AFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY  401 (689)
Q Consensus       326 al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  401 (689)
                      +.+++.+.  .+..||..+.+    .+++.+|.-+|+..-+..|..+..+..++.+...+|++++|...++.++..++++
T Consensus       163 mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d  240 (299)
T KOG3081|consen  163 MQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD  240 (299)
T ss_pred             HHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence            88776553  33334444332    3468888888888888778888888888888999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCChh
Q 005594          402 AEAYNNLGVLYRDAGSISLAID-AYEQCLKIDPDSRN  437 (689)
Q Consensus       402 ~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~  437 (689)
                      ++++.++-.+-...|...++.+ ...+....+|+++.
T Consensus       241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  241 PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence            9988888888888887766554 44555566777653

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.86  E-value=1.1e-07  Score=100.03  Aligned_cols=144  Identities=16%  Similarity=0.062  Sum_probs=108.8

Q ss_pred             HHhCCCCHHH--HHhHHHHHHHhCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 005594           75 LEKDSGNVEA--HIGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG--------RLVEAAESYHK  141 (689)
Q Consensus        75 l~~~p~~~~~--~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~  141 (689)
                      ...-|.+..+  ++..|..+...++   ..+|+.+|+++++++|++..++..++.++....        +..++....++
T Consensus       330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            3455666554  4556666665544   678999999999999999888888877765432        34556666667


Q ss_pred             HHhc--CCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005594          142 ALSA--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL  219 (689)
Q Consensus       142 al~~--~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  219 (689)
                      ++.+  ++.++..       +..+|......|++++|...+++++.++| +..++..+|.++...|++++|++.|++++.
T Consensus       410 a~al~~~~~~~~~-------~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        410 IVALPELNVLPRI-------YEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             hhhcccCcCChHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6664  4444433       55566667777999999999999999998 478999999999999999999999999999


Q ss_pred             hCCCCHH
Q 005594          220 ERPMYAE  226 (689)
Q Consensus       220 ~~p~~~~  226 (689)
                      ++|.++.
T Consensus       482 L~P~~pt  488 (517)
T PRK10153        482 LRPGENT  488 (517)
T ss_pred             cCCCCch
Confidence            9998775

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.84  E-value=7.5e-06  Score=80.62  Aligned_cols=263  Identities=14%  Similarity=0.103  Sum_probs=183.4

Q ss_pred             cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCC
Q 005594          170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALERPM--------YAEAYCNMGVIYKNRGD  240 (689)
Q Consensus       170 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~g~  240 (689)
                      ..+...+..-.+.+.....+.+.+....++.++..|++.+|.+.+... +...+.        ..-.|.++|.++++.|.
T Consensus       219 ~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~  298 (696)
T KOG2471|consen  219 TRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGC  298 (696)
T ss_pred             HHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhh
Confidence            334444444444444445566788888899999999999999988664 222222        22356899999999999


Q ss_pred             HHHHHHHHHHHHhc-----------CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005594          241 LESAIACYERCLAV-----------SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA  309 (689)
Q Consensus       241 ~~~A~~~~~~al~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  309 (689)
                      |.-+..+|.++++.           .|...........++++.|..+...|++-.|.++|.++....-.++..|..++.+
T Consensus       299 y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc  378 (696)
T KOG2471|consen  299 YQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC  378 (696)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            99999999999961           1111122223345677888888889999999999999999999999999999988


Q ss_pred             HHhcCC-------------------------------------------------HHHHHHHHHHHHhhC----------
Q 005594          310 YGEMLK-------------------------------------------------FDMAIVFYELAFHFN----------  330 (689)
Q Consensus       310 ~~~~g~-------------------------------------------------~~~A~~~~~~al~~~----------  330 (689)
                      .+...+                                                 .+-|.-+++.++-+-          
T Consensus       379 Cima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~  458 (696)
T KOG2471|consen  379 CIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSIL  458 (696)
T ss_pred             HHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhh
Confidence            753211                                                 133455555554321          


Q ss_pred             -----------------------------------C-CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          331 -----------------------------------P-HC-----------AEACNNLGVIYKDRDNLDKAVECYQMALSI  363 (689)
Q Consensus       331 -----------------------------------p-~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~  363 (689)
                                                         | ..           ..++.+.+.+-..+|+.-.|+..-.+.++.
T Consensus       459 ~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~  538 (696)
T KOG2471|consen  459 SVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL  538 (696)
T ss_pred             hhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh
Confidence                                               0 00           124456677778899999999999988876


Q ss_pred             CCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHH------H-----------------hCCC----------c----
Q 005594          364 KPNFSQSLNNLGVVY-----TVQGKMDAAAEMIEKAI------A-----------------ANPT----------Y----  401 (689)
Q Consensus       364 ~p~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al------~-----------------~~p~----------~----  401 (689)
                       |+...++..||.+|     ..+.+..+|...+.--+      .                 ++|.          .    
T Consensus       539 -~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~A  617 (696)
T KOG2471|consen  539 -ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEA  617 (696)
T ss_pred             -hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHH
Confidence             55566666666655     45677777776665411      0                 0110          0    


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594          402 -AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP  433 (689)
Q Consensus       402 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  433 (689)
                       ...+++||.++.-+|++++|..++..+..+-+
T Consensus       618 r~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h  650 (696)
T KOG2471|consen  618 RGVLFANLAAALALQGHHDQAKSLLTHAATLLH  650 (696)
T ss_pred             hHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence             23678999999999999999999999999888

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.83  E-value=2.7e-09  Score=99.44  Aligned_cols=241  Identities=15%  Similarity=0.060  Sum_probs=175.1

Q ss_pred             HHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005594          160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG  239 (689)
Q Consensus       160 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  239 (689)
                      +...|+.|+.+|.|++|+.+|.+++..+|.++..+.+.+.+|++++++..|...++.++.++.....+|...+.+-..+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 005594          240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA  319 (689)
Q Consensus       240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  319 (689)
                      ...+|.+.++.++.+.|++.+....++.    +.       ...++.    -+.+..|.                 +-.|
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~----i~-------Sl~E~~----I~~KsT~G-----------------~~~A  227 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLAR----IN-------SLRERK----IATKSTPG-----------------FTPA  227 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHH----hc-------chHhhh----HHhhcCCC-----------------CCcc
Confidence            9999999999999999997654433222    11       111110    01111111                 1122


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005594          320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP  399 (689)
Q Consensus       320 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  399 (689)
                      .+-..+++.+        -.-|..+...|.++.++.++.+-+....++...-.+ +..+.+..++++|+...-+++..+|
T Consensus       228 ~Q~~~Q~l~~--------K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~  298 (536)
T KOG4648|consen  228 RQGMIQILPI--------KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKP  298 (536)
T ss_pred             ccchhhhccc--------cCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCC
Confidence            2222222211        112455556677777777776666554444433333 5666777778888888888877777


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhh
Q 005594          400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN  441 (689)
Q Consensus       400 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  441 (689)
                      .........+.+-.-.|...++...++.++.+.|.+..+...
T Consensus       299 s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~  340 (536)
T KOG4648|consen  299 TPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKET  340 (536)
T ss_pred             CcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhh
Confidence            766666666666667778888889999999999988766544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.80  E-value=1.9e-07  Score=93.71  Aligned_cols=121  Identities=23%  Similarity=0.239  Sum_probs=108.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 005594          305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM  384 (689)
Q Consensus       305 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  384 (689)
                      .+-..+...++++.|+..+++..+.+|+   +...++.++...++..+|++.+.++++..|.+...+...+..+...+++
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence            3455566678899999999999888865   5667899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC  428 (689)
Q Consensus       385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  428 (689)
                      +.|++..+++++..|++...|+.|+.+|..+|++++|+..+..+
T Consensus       251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999776643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.79  E-value=3.3e-06  Score=83.04  Aligned_cols=158  Identities=12%  Similarity=0.055  Sum_probs=124.7

Q ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHH-HHcCCC--------CH
Q 005594           46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA-VKLDPQ--------NA  116 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~  116 (689)
                      ...+........+++..+...+....+.++....+.+.+++..+..++..|++.+|.+.+... +...|.        .-
T Consensus       204 ~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~c  283 (696)
T KOG2471|consen  204 LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSC  283 (696)
T ss_pred             cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhh
Confidence            344455566677788888888988888888888889999999999999999999999987643 222222        23


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CC--CCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHh
Q 005594          117 CAHTHCGILYKDEGRLVEAAESYHKALSA---------DP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK  185 (689)
Q Consensus       117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p--~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~  185 (689)
                      .+|.++|.++++.|.|.-+..+|.++++.         .|  ...-....-..++++.|..+...|+.-.|.++|.++..
T Consensus       284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~  363 (696)
T KOG2471|consen  284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH  363 (696)
T ss_pred             eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence            35688999999999999999999999961         11  11111222345689999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHH
Q 005594          186 IDPHYAPAYYNLGVVYSE  203 (689)
Q Consensus       186 ~~~~~~~~~~~la~~~~~  203 (689)
                      ....++..|..++.+...
T Consensus       364 vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  364 VFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHhcCcHHHHHHHHHHHH
Confidence            999999999999988764

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.78  E-value=0.00025  Score=71.37  Aligned_cols=371  Identities=15%  Similarity=0.053  Sum_probs=185.2

Q ss_pred             HHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005594           72 EIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP  151 (689)
Q Consensus        72 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  151 (689)
                      ++-++.+|.+.++|+.+..-+..+ -+++..+.|++.+...|..+.+|...........+|+.-..+|.+++..--+ .+
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD   87 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD   87 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence            555677777777777777766555 7777777777777777777777777777777777777777777777653222 22


Q ss_pred             HHHHHHHHHHHhHHHHHHcCChHHHH----HHHHHHHh---hCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHH
Q 005594          152 AAECLAIVLTDLGTSLKLAGNTQDGI----QKYYEALK---IDPHYAPAYYNLGVVYS---------ELMQYDTALGCYE  215 (689)
Q Consensus       152 ~~~~~a~~~~~l~~~~~~~~~~~~A~----~~~~~al~---~~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~  215 (689)
                      .|..    |  +..+-...++...+.    +.|+-++.   .++.....|...+..+.         ++.+.+.-.+.|+
T Consensus        88 LW~l----Y--l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYq  161 (656)
T KOG1914|consen   88 LWKL----Y--LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQ  161 (656)
T ss_pred             HHHH----H--HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHH
Confidence            2111    1  111111222222222    22222222   24444555554443322         2335556667777


Q ss_pred             HHHHhCCCCHHH-H-------------HHHHHHHHHcCCHHHHHHHHHHHHhcC-----------CCcHHHHhhHHHHHH
Q 005594          216 KAALERPMYAEA-Y-------------CNMGVIYKNRGDLESAIACYERCLAVS-----------PNFEIAKNNMAIALT  270 (689)
Q Consensus       216 ~al~~~p~~~~~-~-------------~~la~~~~~~g~~~~A~~~~~~al~~~-----------~~~~~~~~~~~~~~~  270 (689)
                      +++..--.+.+- |             ...-.+-.....|..|...+++...+.           |.....-......+.
T Consensus       162 ral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~  241 (656)
T KOG1914|consen  162 RALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWK  241 (656)
T ss_pred             HHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHH
Confidence            776543222211 1             111112223344556666666554331           111111111111111


Q ss_pred             Hhhhhhh------hcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHh
Q 005594          271 DLGTKVK------LEGD--INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--------------FDMAIVFYELAFH  328 (689)
Q Consensus       271 ~l~~~~~------~~~~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~  328 (689)
                      ++-....      ..+.  -....-.+++++..-+-.+++|+..+..+...++              -+++..+|++++.
T Consensus       242 n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~  321 (656)
T KOG1914|consen  242 NWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE  321 (656)
T ss_pred             HHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence            1111100      0111  1223345666776667777777766665555555              6777788887776


Q ss_pred             hC-CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 005594          329 FN-PHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE  403 (689)
Q Consensus       329 ~~-p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  403 (689)
                      .- ..+...++.++..-...-   +++.....+++++.+...++. ++..+-..-.+..-.+.|...|.++-+..-....
T Consensus       322 ~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hh  401 (656)
T KOG1914|consen  322 GLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHH  401 (656)
T ss_pred             HHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcch
Confidence            42 223344444444333222   255666667776665433322 3444444444444556666666666554332222


Q ss_pred             HHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhcc
Q 005594          404 AYNNLGVL-YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN  450 (689)
Q Consensus       404 ~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  450 (689)
                      ++..-|.+ |.-.++.+-|...|+-.++..++.+.....++.-+.++.
T Consensus       402 VfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lN  449 (656)
T KOG1914|consen  402 VFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLN  449 (656)
T ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC
Confidence            22222222 344566666666666666666666665555444444443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.77  E-value=8.8e-08  Score=82.72  Aligned_cols=105  Identities=27%  Similarity=0.314  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005594          337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL  411 (689)
Q Consensus       337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  411 (689)
                      +-.-|.-++..|+|++|..-|..|+.+.|..+.     .+.+.|.++.+++.++.|+....++++++|.+..++...|.+
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence            334567778888899999999999888887643     678889999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhhHhh
Q 005594          412 YRDAGSISLAIDAYEQCLKIDPDSRNAGQN  441 (689)
Q Consensus       412 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  441 (689)
                      |.++.++++|++.|++.++.+|....++..
T Consensus       178 yek~ek~eealeDyKki~E~dPs~~ear~~  207 (271)
T KOG4234|consen  178 YEKMEKYEEALEDYKKILESDPSRREAREA  207 (271)
T ss_pred             HHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence            999999999999999999999998877654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.77  E-value=0.00028  Score=69.53  Aligned_cols=373  Identities=14%  Similarity=0.047  Sum_probs=207.3

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH-----HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005594           51 ALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL  125 (689)
Q Consensus        51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  125 (689)
                      +...|..+.+++++.+|.++|.++.+...+++     +.+.++-...+-+++.+.-...+...-+..|..+....-.|..
T Consensus         9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~   88 (549)
T PF07079_consen    9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV   88 (549)
T ss_pred             HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            44578889999999999999999988655543     3444444445566777777777777777888888888889999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHHH--HHhHHHHHHcCChHHHHHHHHHHHhhC-C----CCHH
Q 005594          126 YKDEGRLVEAAESYHKALSADPSYKPA------AECLAIVL--TDLGTSLKLAGNTQDGIQKYYEALKID-P----HYAP  192 (689)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~~a~~~--~~l~~~~~~~~~~~~A~~~~~~al~~~-~----~~~~  192 (689)
                      .++.+.+.+|++.+......-......      .......+  ...+.++...|.+.++...+++.+..- +    -+.+
T Consensus        89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d  168 (549)
T PF07079_consen   89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD  168 (549)
T ss_pred             HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence            999999999999987776542222111      11111111  235778889999999999999887652 1    2333


Q ss_pred             HHH----HHHHHHHH----cCCHHHHHHHHHHHH-------Hh--------CCCC---------------------HHHH
Q 005594          193 AYY----NLGVVYSE----LMQYDTALGCYEKAA-------LE--------RPMY---------------------AEAY  228 (689)
Q Consensus       193 ~~~----~la~~~~~----~g~~~~A~~~~~~al-------~~--------~p~~---------------------~~~~  228 (689)
                      .+.    .+|+.|+-    ....+-+..+|+.++       ..        .|..                     ..++
T Consensus       169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l  248 (549)
T PF07079_consen  169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL  248 (549)
T ss_pred             HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence            333    34444431    122222233333221       10        1110                     0111


Q ss_pred             HHHHHHHH--------------HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh
Q 005594          229 CNMGVIYK--------------NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY  294 (689)
Q Consensus       229 ~~la~~~~--------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  294 (689)
                      .+..+-|.              -..+.+++....+.....  +.......+...+..+-....++++..+|.+++.-...
T Consensus       249 ~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~--~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~  326 (549)
T PF07079_consen  249 ENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASS--KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI  326 (549)
T ss_pred             HHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            11100000              011223333332222211  11112222222222222233345566666666655555


Q ss_pred             hCCCCHH-----------------------------------------------HHHHHHHHHHhcCC-HHHHHHHHHHH
Q 005594          295 YNWHYAD-----------------------------------------------AMYNLGVAYGEMLK-FDMAIVFYELA  326 (689)
Q Consensus       295 ~~~~~~~-----------------------------------------------~~~~la~~~~~~g~-~~~A~~~~~~a  326 (689)
                      .+|+...                                               -+..-|.-+.+.|. -++|+..++.+
T Consensus       327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i  406 (549)
T PF07079_consen  327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI  406 (549)
T ss_pred             cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            5554321                                               12223344445554 66777777777


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhc---------CC---CCHHHHHHH--HHHHHHcCCHHHHHHH
Q 005594          327 FHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALSI---------KP---NFSQSLNNL--GVVYTVQGKMDAAAEM  390 (689)
Q Consensus       327 l~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~---------~p---~~~~~~~~l--a~~~~~~g~~~~A~~~  390 (689)
                      ++..+.+.+..+..-...  ...|.+|+.  .+-+.+++         .|   .+.+.-+.|  |..++.+|++.++.-+
T Consensus       407 l~ft~yD~ec~n~v~~fv--Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y  484 (549)
T PF07079_consen  407 LQFTNYDIECENIVFLFV--KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY  484 (549)
T ss_pred             HHhccccHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            777666654332221111  112222221  11111111         11   223333444  3446779999999988


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC  428 (689)
Q Consensus       391 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  428 (689)
                      -.=..++.| ++.++..+|.++....+|++|..++...
T Consensus       485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            888888999 7999999999999999999999988753

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.76  E-value=2.5e-07  Score=77.18  Aligned_cols=108  Identities=13%  Similarity=0.148  Sum_probs=97.1

Q ss_pred             cCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH---HH
Q 005594           45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CA  118 (689)
Q Consensus        45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~  118 (689)
                      ...+..++..|...++.|+|.+|++.|+.+....|..   ..+.+.++.+|+..+++++|+..+++.++++|.++   .+
T Consensus         7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen    7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence            3567889999999999999999999999999988864   57899999999999999999999999999999875   57


Q ss_pred             HHHHHHHHHHcCC---------------HHHHHHHHHHHHhcCCCCHHH
Q 005594          119 HTHCGILYKDEGR---------------LVEAAESYHKALSADPSYKPA  152 (689)
Q Consensus       119 ~~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~  152 (689)
                      ++..|.++..+..               ..+|...|++.++..|++.-+
T Consensus        87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            8899999888876               889999999999999997654

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.75  E-value=0.00038  Score=70.09  Aligned_cols=419  Identities=13%  Similarity=0.060  Sum_probs=266.8

Q ss_pred             cccccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHH
Q 005594           41 STLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT  120 (689)
Q Consensus        41 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  120 (689)
                      ....+.+.+.|..+.+.+-.+ .+++....|++.+...|..+.+|.......+..++|+.-..+|.++|..--+ .+.|.
T Consensus        13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~   90 (656)
T KOG1914|consen   13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWK   90 (656)
T ss_pred             HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHH
Confidence            345568899999999988777 9999999999999999999999999999999999999999999999875332 44443


Q ss_pred             H-HHHHHHHcCCHHHHHHHHHHH----Hh---cCCCCHHHHHHHHHHHHH---hHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005594          121 H-CGILYKDEGRLVEAAESYHKA----LS---ADPSYKPAAECLAIVLTD---LGTSLKLAGNTQDGIQKYYEALKIDPH  189 (689)
Q Consensus       121 ~-la~~~~~~g~~~~A~~~~~~a----l~---~~p~~~~~~~~~a~~~~~---l~~~~~~~~~~~~A~~~~~~al~~~~~  189 (689)
                      . +..+-...|+...+....-++    +.   .++.....|......+..   .|. +..+.+.+.-.+.|++++...-.
T Consensus        91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk-~ee~QRI~~vRriYqral~tPm~  169 (656)
T KOG1914|consen   91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGK-YEENQRITAVRRIYQRALVTPMH  169 (656)
T ss_pred             HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHccccccc-HHHHHHHHHHHHHHHHHhcCccc
Confidence            2 333444455544443333333    32   344444443333222211   222 22334667777888888875433


Q ss_pred             CHHHHHH------------HH--HHHHHcCCHHHHHHHHHHHHHh-------CCC-----C------HHHHHHHHHHHHH
Q 005594          190 YAPAYYN------------LG--VVYSELMQYDTALGCYEKAALE-------RPM-----Y------AEAYCNMGVIYKN  237 (689)
Q Consensus       190 ~~~~~~~------------la--~~~~~~g~~~~A~~~~~~al~~-------~p~-----~------~~~~~~la~~~~~  237 (689)
                      +.+-+.+            .|  .+-.....|..|...+++....       +|.     .      .+.|.++...-..
T Consensus       170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEks  249 (656)
T KOG1914|consen  170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKS  249 (656)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence            3322111            11  1122334566676666665432       111     1      1233333322211


Q ss_pred             c------CC--HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCC-------HHHHHHHHHHHHhhCCC-CHH
Q 005594          238 R------GD--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD-------INQGVAYYKKALYYNWH-YAD  301 (689)
Q Consensus       238 ~------g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~al~~~~~-~~~  301 (689)
                      .      |.  ...-.-.+++++..-+-.++.|+..+..+...+.++...|+       .+++..+|++++..... +..
T Consensus       250 NpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~  329 (656)
T KOG1914|consen  250 NPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL  329 (656)
T ss_pred             CCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            1      11  12233467788888888888888888888887777766665       45667777777654322 333


Q ss_pred             HHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005594          302 AMYNLGVAYGEML---KFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV  377 (689)
Q Consensus       302 ~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  377 (689)
                      .++.++..-...-   +++.--..+++++.+...+ .-++..+-..-.+..-.+.|...|.++-+.......++..-|.+
T Consensus       330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~m  409 (656)
T KOG1914|consen  330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALM  409 (656)
T ss_pred             HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence            4444444333333   3677778888888764333 34556666666677778889999999987654444444444443


Q ss_pred             -HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHhhHHHHhhhccCCCh
Q 005594          378 -YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI--DPDSRNAGQNRLLAMNYINEGHD  454 (689)
Q Consensus       378 -~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~  454 (689)
                       |...++.+-|...|+-.++..++.+..-......+...++-..|...|++++.-  .|+...-.+..++..- ..-|+-
T Consensus       410 Ey~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE-S~vGdL  488 (656)
T KOG1914|consen  410 EYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE-SNVGDL  488 (656)
T ss_pred             HHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH-HhcccH
Confidence             456899999999999999999999999999999999999999999999999987  5555444444443322 134555


Q ss_pred             HHHHHHHHH
Q 005594          455 DKLFEAHRD  463 (689)
Q Consensus       455 ~~~~~~~~~  463 (689)
                      ....+.-++
T Consensus       489 ~si~~lekR  497 (656)
T KOG1914|consen  489 NSILKLEKR  497 (656)
T ss_pred             HHHHHHHHH
Confidence            555544443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.75  E-value=3.2e-07  Score=75.50  Aligned_cols=94  Identities=21%  Similarity=0.193  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHH
Q 005594          302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLG  375 (689)
Q Consensus       302 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la  375 (689)
                      +++.+|.++-..|+.++|+..|++++....+.   ..++..+|..+...|++++|+..+++++...|+   +..+...++
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            44555555666666666666666665543222   345555666666666666666666666555555   444555555


Q ss_pred             HHHHHcCCHHHHHHHHHHHH
Q 005594          376 VVYTVQGKMDAAAEMIEKAI  395 (689)
Q Consensus       376 ~~~~~~g~~~~A~~~~~~al  395 (689)
                      .++...|++++|+..+-.++
T Consensus        83 l~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   83 LALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHCCCHHHHHHHHHHHH
Confidence            55556666666655555444

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.74  E-value=1.9e-07  Score=80.67  Aligned_cols=108  Identities=23%  Similarity=0.240  Sum_probs=97.1

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH-----HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC  122 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  122 (689)
                      ++.+-..|+.++..|+|++|..-|..+|...|...     ..+.+.|.++++++.++.|++.+.++++++|.+..++...
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            34455678899999999999999999999988743     4677899999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005594          123 GILYKDEGRLVEAAESYHKALSADPSYKPAAEC  155 (689)
Q Consensus       123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  155 (689)
                      +.+|.++..+++|+..|+++++.+|....+...
T Consensus       175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~  207 (271)
T KOG4234|consen  175 AEAYEKMEKYEEALEDYKKILESDPSRREAREA  207 (271)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence            999999999999999999999999998766443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.74  E-value=3.6e-08  Score=73.46  Aligned_cols=67  Identities=22%  Similarity=0.253  Sum_probs=55.8

Q ss_pred             HHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594           58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI  124 (689)
Q Consensus        58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  124 (689)
                      ++..|++++|+..|+++++.+|++.++++.+|.++...|++++|...+++++..+|+++..+..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            3577888888888888888888888888888888888888888888888888888888777766654

...

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.74  E-value=5.2e-05  Score=80.62  Aligned_cols=227  Identities=11%  Similarity=-0.015  Sum_probs=167.7

Q ss_pred             HHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCC
Q 005594           93 QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN  172 (689)
Q Consensus        93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~  172 (689)
                      ...+++.+|+....+.++..|+...+....|..+.++|+.++|..+++..-...+++...       +..+-.+|..+++
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~t-------Lq~l~~~y~d~~~   92 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLT-------LQFLQNVYRDLGK   92 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHH-------HHHHHHHHHHHhh
Confidence            457889999999999999999999999999999999999999998887766666665444       5667778888999


Q ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH---------
Q 005594          173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RGDLE---------  242 (689)
Q Consensus       173 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~---------  242 (689)
                      .++|..+|++++..+|+ .+..+.+-.+|.+.+.|.+-.+.--+..+..|..+........+..+ ....+         
T Consensus        93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~  171 (932)
T KOG2053|consen   93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLA  171 (932)
T ss_pred             hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence            99999999999999999 88888999999999999887777777777888876654444444333 32222         


Q ss_pred             HHHHHHHHHHhcC-CCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHH-Hhh-CCCCHHHHHHHHHHHHhcCCHHHH
Q 005594          243 SAIACYERCLAVS-PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA-LYY-NWHYADAMYNLGVAYGEMLKFDMA  319 (689)
Q Consensus       243 ~A~~~~~~al~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~-~~~~~~~~~~la~~~~~~g~~~~A  319 (689)
                      -|....++.++.. +-..     .+..... -.+...++.+++|.+.+..- .+. .+.+..........+...+++.+-
T Consensus       172 LA~~m~~~~l~~~gk~~s-----~aE~~Ly-l~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l  245 (932)
T KOG2053|consen  172 LAEKMVQKLLEKKGKIES-----EAEIILY-LLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL  245 (932)
T ss_pred             HHHHHHHHHhccCCccch-----HHHHHHH-HHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence            3455566666555 1111     1111111 12334477899999998433 333 344445555667788888999999


Q ss_pred             HHHHHHHHhhCCCC
Q 005594          320 IVFYELAFHFNPHC  333 (689)
Q Consensus       320 ~~~~~~al~~~p~~  333 (689)
                      .+...+++...+++
T Consensus       246 ~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  246 FELSSRLLEKGNDD  259 (932)
T ss_pred             HHHHHHHHHhCCcc
Confidence            99999999998887

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.72  E-value=3.3e-07  Score=92.04  Aligned_cols=115  Identities=17%  Similarity=0.147  Sum_probs=107.0

Q ss_pred             hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594          277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC  356 (689)
Q Consensus       277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  356 (689)
                      ...++++.|+..+++..+.+|+   +...++.++...++..+|++.+.++++..|.+...+...+..+...++++.|+++
T Consensus       180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i  256 (395)
T PF09295_consen  180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI  256 (395)
T ss_pred             hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            3467899999999999988865   6677899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA  394 (689)
Q Consensus       357 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  394 (689)
                      .++++++.|++...|..|+.+|...|++++|+..++.+
T Consensus       257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  257 AKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            99999999999999999999999999999999877754

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.71  E-value=8.5e-06  Score=74.81  Aligned_cols=173  Identities=17%  Similarity=0.109  Sum_probs=127.3

Q ss_pred             CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005594           81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA  157 (689)
Q Consensus        81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  157 (689)
                      .+..++..|...++.|++++|++.|+.+...+|..   ..+...++..+++.+++++|+...++-+.+.|.++++..   
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY---  109 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY---  109 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH---
Confidence            46789999999999999999999999999998865   568899999999999999999999999999999887633   


Q ss_pred             HHHHHhHHHHHHc--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005594          158 IVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC  229 (689)
Q Consensus       158 ~~~~~l~~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  229 (689)
                       +++..|.++...        .-..+|+..|+..++..|++.-+-.....           +..+...      ...--.
T Consensus       110 -~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~------LA~~Em  171 (254)
T COG4105         110 -AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDA------LAGHEM  171 (254)
T ss_pred             -HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHH------HHHHHH
Confidence             355555554332        22356677777777777775332211111           1111111      123345


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHHHHhhh
Q 005594          230 NMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGT  274 (689)
Q Consensus       230 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~l~~  274 (689)
                      .+|..|.+.|.+..|+.-++.+++..|+..   +++..+..++..+|.
T Consensus       172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl  219 (254)
T COG4105         172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGL  219 (254)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence            678999999999999999999999887754   455566677777764

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.68  E-value=6.2e-07  Score=73.83  Aligned_cols=96  Identities=20%  Similarity=0.191  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 005594          335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---YAEAYNNL  408 (689)
Q Consensus       335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l  408 (689)
                      .+++.+|.++-..|+.++|+.+|++++......   ..++..+|..+..+|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            578899999999999999999999999975444   558999999999999999999999999999888   77888889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Q 005594          409 GVLYRDAGSISLAIDAYEQCLK  430 (689)
Q Consensus       409 a~~~~~~g~~~~A~~~~~~al~  430 (689)
                      +.++...|+.++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999988775

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.65  E-value=6.4e-07  Score=82.93  Aligned_cols=105  Identities=21%  Similarity=0.245  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 005594          337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV  410 (689)
Q Consensus       337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~  410 (689)
                      .++.|.-+++.|+|.+|...|..-++..|+.   +.++++||.+++.+|++++|...|..+++..|++   +++++.||.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6777777888889999999999999888876   5689999999999999999999999999887765   688999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhhHhh
Q 005594          411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQN  441 (689)
Q Consensus       411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  441 (689)
                      +..++|+.++|...|+++++..|+...+...
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            9999999999999999999999998776544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.63  E-value=1.1e-07  Score=70.90  Aligned_cols=56  Identities=29%  Similarity=0.460  Sum_probs=22.3

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 005594          348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE  403 (689)
Q Consensus       348 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  403 (689)
                      |++++|++.|++++..+|++..++..+|.++.+.|++++|...+++++..+|+++.
T Consensus         5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~   60 (68)
T PF14559_consen    5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE   60 (68)
T ss_dssp             THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence            33444444444444444444444444444444444444444444444444443333

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.62  E-value=1.8e-07  Score=92.92  Aligned_cols=68  Identities=21%  Similarity=0.305  Sum_probs=39.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005594          330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS---LNNLGVVYTVQGKMDAAAEMIEKAIAA  397 (689)
Q Consensus       330 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~  397 (689)
                      +|+++..++++|.+|...|++++|+..|+++++++|++.++   ++++|.+|..+|++++|+.++++++++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45555556666666666666666666666666665555533   555555555555555555555555554

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.60  E-value=9.7e-06  Score=69.56  Aligned_cols=148  Identities=18%  Similarity=0.161  Sum_probs=123.2

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594          281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQM  359 (689)
Q Consensus       281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  359 (689)
                      +.+....-..+.+...|. ..-.+.+|..+.+.|++.+|...|++++. +..+++..+..++...+..+++..|...+++
T Consensus        71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~  149 (251)
T COG4700          71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED  149 (251)
T ss_pred             ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            444444444555555554 34467899999999999999999999986 4678889999999999999999999999999


Q ss_pred             HHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594          360 ALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK  430 (689)
Q Consensus       360 al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  430 (689)
                      ..+.+|.  .++....+|.++...|++.+|...|+.++...|+ +++....+..+.++|+..+|...+....+
T Consensus       150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            9998876  4678888999999999999999999999999987 77888889999999999988877766543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.59  E-value=3.1e-07  Score=69.46  Aligned_cols=69  Identities=22%  Similarity=0.322  Sum_probs=50.6

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005594           55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG  123 (689)
Q Consensus        55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  123 (689)
                      ..+++..++|++|++.+++++..+|+++..+..+|.++...|++++|+..|+++++..|+++.+....+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            456677777777777777777777777777777777777777777777777777777777766554443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.56  E-value=4.2e-07  Score=68.76  Aligned_cols=63  Identities=24%  Similarity=0.399  Sum_probs=34.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005594          376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA  438 (689)
Q Consensus       376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  438 (689)
                      .+|...+++++|++++++++.++|+++..+..+|.++..+|++++|.+.++++++..|+++.+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            345555555555555555555555555555555555555555555555555555555555444

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=98.55  E-value=1.2e-05  Score=80.97  Aligned_cols=105  Identities=25%  Similarity=0.319  Sum_probs=92.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 005594          342 VIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL  420 (689)
Q Consensus       342 ~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  420 (689)
                      ......|+...|+.++..|+...|.... ...+|+.++.+.|...+|-..+.+++.+....+-.++.+|..+..+.+.+.
T Consensus       615 lywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~  694 (886)
T KOG4507|consen  615 LYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG  694 (886)
T ss_pred             ceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence            3344579999999999999999887644 678999999999999999999999999998888999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhhHhhHHHHh
Q 005594          421 AIDAYEQCLKIDPDSRNAGQNRLLAM  446 (689)
Q Consensus       421 A~~~~~~al~~~p~~~~~~~~~~~~~  446 (689)
                      |++.|++|++++|+++.....+.+..
T Consensus       695 a~~~~~~a~~~~~~~~~~~~~l~~i~  720 (886)
T KOG4507|consen  695 ALEAFRQALKLTTKCPECENSLKLIR  720 (886)
T ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHH
Confidence            99999999999999988776654443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.54  E-value=3.7e-06  Score=70.22  Aligned_cols=103  Identities=21%  Similarity=0.231  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHH
Q 005594          336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYNNLG  409 (689)
Q Consensus       336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la  409 (689)
                      .++.-|...++.|+|++|++.|+......|..   ..+.+.++.+|++.+++++|+..+++.++++|+++   -+++..|
T Consensus        12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g   91 (142)
T PF13512_consen   12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG   91 (142)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence            33444444444444444444444444443332   23444444444444444444444444444444432   2344444


Q ss_pred             HHHHHcCC---------------HHHHHHHHHHHHhcCCCChhh
Q 005594          410 VLYRDAGS---------------ISLAIDAYEQCLKIDPDSRNA  438 (689)
Q Consensus       410 ~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~  438 (689)
                      .++..+..               ..+|...|++.++..|++.-+
T Consensus        92 L~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   92 LSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            44444433               668888899999998887654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.52  E-value=0.00013  Score=66.47  Aligned_cols=227  Identities=14%  Similarity=0.128  Sum_probs=164.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------CCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594          190 YAPAYYNLGVVYSELMQYDTALGCYEKAALER-------------PMY------AEAYCNMGVIYKNRGDLESAIACYER  250 (689)
Q Consensus       190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------p~~------~~~~~~la~~~~~~g~~~~A~~~~~~  250 (689)
                      ....|...-.++.++...++|..-++..-+.+             |+.      .......|.+....|+..+.+.-+..
T Consensus        68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~  147 (366)
T KOG2796|consen   68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK  147 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            34555666666777777777776665543332             111      12334456667777777777666555


Q ss_pred             HHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005594          251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN  330 (689)
Q Consensus       251 al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  330 (689)
                      ....-.+              +-.........+..++.+++-+      ..+.+.+..++...|+|.-....+.+.++.+
T Consensus       148 L~~~V~~--------------ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~  207 (366)
T KOG2796|consen  148 LKTVVSK--------------ILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY  207 (366)
T ss_pred             HHHHHHH--------------HHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence            4322111              1111111223355666666654      3567788888999999999999999999987


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 005594          331 -PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE  403 (689)
Q Consensus       331 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  403 (689)
                       |..+.....+|.+..+.|+.+.|..++++.-+..      .....+..+.+.++.-.+++.+|...+.+.+..+|.++.
T Consensus       208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~  287 (366)
T KOG2796|consen  208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV  287 (366)
T ss_pred             CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence             6678888899999999999999999998654332      223446778888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005594          404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR  436 (689)
Q Consensus       404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  436 (689)
                      +..+.|.|+.-.|+..+|++..+.+++..|...
T Consensus       288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            999999999999999999999999999999754

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.52  E-value=7.6e-06  Score=65.67  Aligned_cols=100  Identities=20%  Similarity=0.215  Sum_probs=85.9

Q ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC----HHHHHHHHH
Q 005594           49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----ACAHTHCGI  124 (689)
Q Consensus        49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~  124 (689)
                      ..+-..|..+...|+.+.|++.|.+++...|.++.+|.+.+..+..+|+.++|++.+++++++....    -.++...|.
T Consensus        44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~  123 (175)
T KOG4555|consen   44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL  123 (175)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            4455678888889999999999999999999999999999999999999999999999999886543    346788899


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC
Q 005594          125 LYKDEGRLVEAAESYHKALSADPS  148 (689)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~p~  148 (689)
                      +|...|+.+.|...|+.+-++...
T Consensus       124 lyRl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  124 LYRLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHHHhCchHHHHHhHHHHHHhCCH
Confidence            999999999999999988877654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=2.1e-05  Score=70.14  Aligned_cols=107  Identities=15%  Similarity=0.200  Sum_probs=74.3

Q ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------H
Q 005594          338 NNLGVIYKDR-DNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA-------E  403 (689)
Q Consensus       338 ~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~  403 (689)
                      ..+|.+|... .++++|+.+|+++-+.....      ...+...+..-...++|.+|+..|++.....-++.       .
T Consensus       117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kd  196 (288)
T KOG1586|consen  117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKD  196 (288)
T ss_pred             hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHH
Confidence            3455555544 67777777777776553322      22555666666778888888888888877654442       3


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHH
Q 005594          404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL  444 (689)
Q Consensus       404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  444 (689)
                      .++.-|.|+.-..+.-.+...+++..+++|...+.+--.++
T Consensus       197 yflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckfl  237 (288)
T KOG1586|consen  197 YFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFL  237 (288)
T ss_pred             HHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHH
Confidence            45566778888888888999999999999998877655433

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.51  E-value=0.00019  Score=65.43  Aligned_cols=198  Identities=14%  Similarity=0.097  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhh
Q 005594          194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG  273 (689)
Q Consensus       194 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~  273 (689)
                      ...-|.+....|+..+.+.-+......       -..+..........+..++.+++-+             ..+.+.+.
T Consensus       125 R~lhAe~~~~lgnpqesLdRl~~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl-------------~~Vmy~~~  184 (366)
T KOG2796|consen  125 RILHAELQQYLGNPQESLDRLHKLKTV-------VSKILANLEQGLAEESSIRLWRKRL-------------GRVMYSMA  184 (366)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHH-------HHHHHHHHHhccchhhHHHHHHHHH-------------HHHHHHHH
Confidence            344566677788888777766655321       1122233333334456666666543             22333344


Q ss_pred             hhhhhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHH
Q 005594          274 TKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN------PHCAEACNNLGVIYKD  346 (689)
Q Consensus       274 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~  346 (689)
                      .++.-.+.+.-....+.+.++.+ |..+.....+|.+..+.|+.+.|..++++.-+..      .....+..+.+.++.-
T Consensus       185 ~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg  264 (366)
T KOG2796|consen  185 NCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG  264 (366)
T ss_pred             HHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec
Confidence            44455778999999999999988 6678889999999999999999999999655432      2345677888899999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHH
Q 005594          347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYNNLGVL  411 (689)
Q Consensus       347 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~  411 (689)
                      .+++.+|...+.+.+..+|.++.+.++.|.|+.-.|+..+|++.++.+++..|...   ...++|-.+
T Consensus       265 ~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tm  332 (366)
T KOG2796|consen  265 QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTM  332 (366)
T ss_pred             ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999742   344444443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.47  E-value=4.6e-06  Score=66.88  Aligned_cols=98  Identities=22%  Similarity=0.336  Sum_probs=78.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHH
Q 005594          338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYR  413 (689)
Q Consensus       338 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~  413 (689)
                      -..|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|++.+++++++....    ..++...|.+|.
T Consensus        47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            3456667777888888888888888888888888888888888888888888888888875443    356778888888


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCC
Q 005594          414 DAGSISLAIDAYEQCLKIDPDS  435 (689)
Q Consensus       414 ~~g~~~~A~~~~~~al~~~p~~  435 (689)
                      .+|+-+.|...|+.+-++-...
T Consensus       127 l~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  127 LLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HhCchHHHHHhHHHHHHhCCHH
Confidence            8888888888888888876543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.43  E-value=2.9e-06  Score=84.59  Aligned_cols=80  Identities=30%  Similarity=0.344  Sum_probs=67.9

Q ss_pred             CCCCCcccccccccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH---HHhHHHHHHHhCCHHHHHHHHHHH
Q 005594           32 TSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEA  108 (689)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~a  108 (689)
                      +++++........+..+..++.+|..++..|+|++|+..|+++++++|++.++   ++++|.+|..+|++++|+..++++
T Consensus        59 ~~~~~~~~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA  138 (453)
T PLN03098         59 PSSSPAKDGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA  138 (453)
T ss_pred             CCCCCCCCCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33344444555667788999999999999999999999999999999998854   999999999999999999999999


Q ss_pred             HHc
Q 005594          109 VKL  111 (689)
Q Consensus       109 l~~  111 (689)
                      ++.
T Consensus       139 Lel  141 (453)
T PLN03098        139 LRD  141 (453)
T ss_pred             HHh
Confidence            987

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.43  E-value=9.3e-05  Score=63.70  Aligned_cols=150  Identities=17%  Similarity=0.139  Sum_probs=98.3

Q ss_pred             hCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhHHHHHHcCCh
Q 005594           95 QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNT  173 (689)
Q Consensus        95 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~l~~~~~~~~~~  173 (689)
                      .=+.+.......+.+...|.. .-.+.+|..+.+.|++.+|...|++++.- ...+..       ++..+++..+..+++
T Consensus        69 ~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a-------~lLglA~Aqfa~~~~  140 (251)
T COG4700          69 KLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA-------MLLGLAQAQFAIQEF  140 (251)
T ss_pred             hcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH-------HHHHHHHHHHhhccH
Confidence            334455555555555555543 23556777777777777777777777653 233332       255566666666777


Q ss_pred             HHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          174 QDGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC  251 (689)
Q Consensus       174 ~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  251 (689)
                      ..|...+++..+.+|.  .++....+|..+..+|++.+|...|+.++...|+ +.+....+..+.++|+.++|...+...
T Consensus       141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            7777777777777664  4566677778888888888888888888877765 566666777777788777766655554


Q ss_pred             Hh
Q 005594          252 LA  253 (689)
Q Consensus       252 l~  253 (689)
                      .+
T Consensus       220 ~d  221 (251)
T COG4700         220 VD  221 (251)
T ss_pred             HH
Confidence            43

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=8.3e-05  Score=66.50  Aligned_cols=141  Identities=14%  Similarity=0.116  Sum_probs=100.3

Q ss_pred             HHHhHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC------CHH
Q 005594          160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSEL-MQYDTALGCYEKAALERPM------YAE  226 (689)
Q Consensus       160 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~------~~~  226 (689)
                      |...+.+|.+ .+.++|+.++++++++..+.      +..+..+|.+|..- .++++|+.+|+++-+....      .-.
T Consensus        77 YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK  155 (288)
T KOG1586|consen   77 YVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANK  155 (288)
T ss_pred             HHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH
Confidence            4444444433 47777777777777664443      23345778888765 8899999999998765332      234


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHH
Q 005594          227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD  301 (689)
Q Consensus       227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~  301 (689)
                      .+...+..-...++|.+|+..|++.....-++....+..-..++.-|.++....+.-.+...+++..+.+|...+
T Consensus       156 C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d  230 (288)
T KOG1586|consen  156 CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD  230 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence            566677778889999999999999988777776666666666677777777777887888888888888887543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.40  E-value=0.00082  Score=69.86  Aligned_cols=210  Identities=13%  Similarity=0.145  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH------HHh----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 005594          194 YYNLGVVYSELMQYDTALGCYEKA------ALE----RPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK  262 (689)
Q Consensus       194 ~~~la~~~~~~g~~~~A~~~~~~a------l~~----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  262 (689)
                      |-..|.+|.+..++++|+++|++.      +++    .|.. ...-...|.-+...|+++.|+..|-++-.+        
T Consensus       664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~--------  735 (1636)
T KOG3616|consen  664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL--------  735 (1636)
T ss_pred             HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH--------
Confidence            344455666666667777666542      222    1211 122233456666667777777666554211        


Q ss_pred             hhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 005594          263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV  342 (689)
Q Consensus       263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  342 (689)
                             ...-......+++.+|+.+++....... ....|-.++.-|...|+|+.|.++|.++-        .......
T Consensus       736 -------~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~  799 (1636)
T KOG3616|consen  736 -------IKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAID  799 (1636)
T ss_pred             -------HHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHH
Confidence                   1111111123455555555554332211 12234456666777777777777776542        2223344


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHH-------------HHHHHHH------HH----hC
Q 005594          343 IYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAA-------------AEMIEKA------IA----AN  398 (689)
Q Consensus       343 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A-------------~~~~~~a------l~----~~  398 (689)
                      .|-+.|++++|.+.-++...  |.. ...|...+.-+.+.|++.+|             +..|++.      +.    ..
T Consensus       800 my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h  877 (1636)
T KOG3616|consen  800 MYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHH  877 (1636)
T ss_pred             HHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhC
Confidence            55566666666665554432  222 22333344444444444443             3333331      11    12


Q ss_pred             CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594          399 PTY-AEAYNNLGVLYRDAGSISLAIDAYEQCL  429 (689)
Q Consensus       399 p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al  429 (689)
                      |+. .+.+..+|.-|...|+..+|...|-++-
T Consensus       878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~  909 (1636)
T KOG3616|consen  878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG  909 (1636)
T ss_pred             hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence            322 4577788888999999998888877654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.37  E-value=5.2e-07  Score=69.25  Aligned_cols=64  Identities=36%  Similarity=0.540  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---N----PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI  431 (689)
Q Consensus       368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  431 (689)
                      ..++.++|.+|..+|++++|+++|++++++   .    |....++.++|.++..+|++++|++++++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            345556666666666666666666666544   1    112445666777777777777777777776654

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.37  E-value=3.6e-06  Score=72.54  Aligned_cols=102  Identities=21%  Similarity=0.261  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594          316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL---DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE  392 (689)
Q Consensus       316 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  392 (689)
                      |+.|.+.++.....+|.+++.+++-|.++..+.++   .++.+                           .+++|+.-|+
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~---------------------------miedAisK~e   59 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK---------------------------MIEDAISKFE   59 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH---------------------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH---------------------------HHHHHHHHHH
Confidence            45566666666666666666666666665544322   11111                           1334444555


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChhhHhhHHH
Q 005594          393 KAIAANPTYAEAYNNLGVLYRDAG-----------SISLAIDAYEQCLKIDPDSRNAGQNRLL  444 (689)
Q Consensus       393 ~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~  444 (689)
                      +++.++|+..++++.+|.+|..++           .+++|..+|++|...+|++...+..+-+
T Consensus        60 eAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen   60 EALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             HHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            555555655555555555555443           3678999999999999999877665433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=98.32  E-value=0.0051  Score=63.48  Aligned_cols=344  Identities=9%  Similarity=-0.057  Sum_probs=203.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Q 005594           64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY-KDEGRLVEAAESYHKA  142 (689)
Q Consensus        64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~a  142 (689)
                      .+.+...|...|...|--...|...|..-.+.|..+.+.+.|++++.--|-+...|..+-... ...|+.+.-...|++|
T Consensus        61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A  140 (577)
T KOG1258|consen   61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA  140 (577)
T ss_pred             HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            355666677777778877778888888888888888888888888888887777665544333 3456667777777777


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHH
Q 005594          143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL------MQYDTALGCYEK  216 (689)
Q Consensus       143 l~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~  216 (689)
                      ......+...    ...+-..-.....++++..-...|++.++..-.....++..-.-+.+.      ...+++...-..
T Consensus       141 ~~~vG~dF~S----~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~  216 (577)
T KOG1258|consen  141 KSYVGLDFLS----DPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSD  216 (577)
T ss_pred             HHhcccchhc----cHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence            7765544322    112333334445566777777777777765333222222221111111      111221111111


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh
Q 005594          217 AALERPMYAEAYCNMGVIYKNRGDLESAI-ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY  295 (689)
Q Consensus       217 al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  295 (689)
                      ....            ......+...+-. ...+......+........+.......-.++.......+.+..++..+..
T Consensus       217 ~~~~------------~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ikr  284 (577)
T KOG1258|consen  217 VAER------------SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKR  284 (577)
T ss_pred             HHhh------------hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccc
Confidence            1100            0000000000000 01111111111111111111112211222222233444444455544432


Q ss_pred             -----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCC
Q 005594          296 -----NWH---YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KPN  366 (689)
Q Consensus       296 -----~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~  366 (689)
                           .|.   ....|..........|+++.....|++++--.....+.|...+......|+.+-|...+.++.+. .|.
T Consensus       285 pYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~  364 (577)
T KOG1258|consen  285 PYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKK  364 (577)
T ss_pred             cccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC
Confidence                 122   23456677777788889999999999988888888888888888888888888888888888776 456


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 005594          367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID  423 (689)
Q Consensus       367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  423 (689)
                      .+.+...-+..-...|++..|...+++..+..|+...+-........++|+.+.+..
T Consensus       365 ~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~  421 (577)
T KOG1258|consen  365 TPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY  421 (577)
T ss_pred             CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence            677777777777888899999999999888888888888888888888888888874

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.30  E-value=1.3e-06  Score=66.99  Aligned_cols=74  Identities=28%  Similarity=0.407  Sum_probs=56.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh
Q 005594          113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI  186 (689)
Q Consensus       113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~  186 (689)
                      |+-..++..+|.+|..+|++++|+.+|++++++.....+.....+.++.++|.++...|++++|++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34456889999999999999999999999998733333333445777888888888888888888888888764

...

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=0.00015  Score=65.39  Aligned_cols=197  Identities=22%  Similarity=0.183  Sum_probs=104.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 005594          231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY  310 (689)
Q Consensus       231 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  310 (689)
                      -+..|...+++++|...+.++.+-..++. .++.-+..+...+.+......+.++..+++++.              ..|
T Consensus        37 AAvafRnAk~feKakdcLlkA~~~yEnnr-slfhAAKayEqaamLake~~klsEvvdl~eKAs--------------~lY  101 (308)
T KOG1585|consen   37 AAVAFRNAKKFEKAKDCLLKASKGYENNR-SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS--------------ELY  101 (308)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------HHH
Confidence            34455555556666655555554433322 222333444444444444456666666666654              345


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCH
Q 005594          311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKM  384 (689)
Q Consensus       311 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~  384 (689)
                      .+.|..+-|-..++++-+.               .+..+.++|+++|++++.+-.+.      .+.+...+.++.+..++
T Consensus       102 ~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf  166 (308)
T KOG1585|consen  102 VECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF  166 (308)
T ss_pred             HHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence            5555555555555554332               22345666666666666553222      23455566677777777


Q ss_pred             HHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhhHhhHHHHhhhccCCCh
Q 005594          385 DAAAEMIEKAIAA------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI----DPDSRNAGQNRLLAMNYINEGHD  454 (689)
Q Consensus       385 ~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~  454 (689)
                      ++|-..+.+-...      .++....+.....+|....+|..|..+|+...++    .|++..+..+++-   ....|+.
T Consensus       167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~---ayd~gD~  243 (308)
T KOG1585|consen  167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT---AYDEGDI  243 (308)
T ss_pred             hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH---HhccCCH
Confidence            7776666554332      2333444555556666666788888888776654    3444444444432   2355666


Q ss_pred             HHHHHH
Q 005594          455 DKLFEA  460 (689)
Q Consensus       455 ~~~~~~  460 (689)
                      ++..+.
T Consensus       244 E~~~kv  249 (308)
T KOG1585|consen  244 EEIKKV  249 (308)
T ss_pred             HHHHHH
Confidence            554443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.29  E-value=0.0011  Score=68.94  Aligned_cols=216  Identities=15%  Similarity=0.106  Sum_probs=112.5

Q ss_pred             HHhHHHHHHHhCCHHHHHHHHHHH------HHc----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005594           85 HIGKGICLQMQNMGRLAFDSFSEA------VKL----DPQNA-CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA  153 (689)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~~a------l~~----~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  153 (689)
                      |-.-|.++.+..++++|+++|++.      +++    .|... ..-..-|.-+...|+++.|+..|-.+-.         
T Consensus       664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------  734 (1636)
T KOG3616|consen  664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------  734 (1636)
T ss_pred             HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------
Confidence            334455555566666677666542      222    12211 1222335566677778877777755421         


Q ss_pred             HHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005594          154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV  233 (689)
Q Consensus       154 ~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  233 (689)
                            +...........+|.+|+..++....... ....|-.++.-|...|+++.|.++|.++        ........
T Consensus       735 ------~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~  799 (1636)
T KOG3616|consen  735 ------LIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAID  799 (1636)
T ss_pred             ------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHH
Confidence                  22222233344677777777665443322 2334556777788888888888888764        22233445


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcHH-HHhhHHHHHHHh------hhhhhhcCCHHHHHHHHHHHH----------hhC
Q 005594          234 IYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDL------GTKVKLEGDINQGVAYYKKAL----------YYN  296 (689)
Q Consensus       234 ~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~al----------~~~  296 (689)
                      +|-+.|++++|.++-+++..  |.... .+...+.-+-..      ..+|...|.+++|+..|++.-          +..
T Consensus       800 my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h  877 (1636)
T KOG3616|consen  800 MYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHH  877 (1636)
T ss_pred             HHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhC
Confidence            67777888888777666532  22111 111111111111      112233444555555554421          112


Q ss_pred             CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005594          297 WHY-ADAMYNLGVAYGEMLKFDMAIVFYELA  326 (689)
Q Consensus       297 ~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a  326 (689)
                      ++. .+....+|.-+...|+...|...|-++
T Consensus       878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea  908 (1636)
T KOG3616|consen  878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA  908 (1636)
T ss_pred             hhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence            222 245666777777777777777766554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=2.6e-06  Score=76.09  Aligned_cols=100  Identities=16%  Similarity=0.126  Sum_probs=95.0

Q ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005594           46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL  125 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  125 (689)
                      ..+..+-+.|+.++....|..|+..|.+++.++|..+..+.+.+.|+++..+++.+.....++++++|+.....+.+|.+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~   87 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW   87 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence            45667888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhc
Q 005594          126 YKDEGRLVEAAESYHKALSA  145 (689)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~  145 (689)
                      ......+++|+..+.++..+
T Consensus        88 ~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   88 LLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HHhhccccHHHHHHHHHHHH
Confidence            99999999999999999664

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=0.00028  Score=63.67  Aligned_cols=169  Identities=16%  Similarity=0.132  Sum_probs=79.9

Q ss_pred             HHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005594          158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM  231 (689)
Q Consensus       158 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  231 (689)
                      ..+..-+..+...+++++|..++.++.+-..++      +.++-..+.+......+.++..+++++.             
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs-------------   98 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS-------------   98 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------
Confidence            334445555566666777776666666443332      1222333333344444444444444442             


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC------HHHHHH
Q 005594          232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYN  305 (689)
Q Consensus       232 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~  305 (689)
                       ..|...|..+.|-..++++-+.-.                      ..++++|+++|++++......      .+.+..
T Consensus        99 -~lY~E~GspdtAAmaleKAak~le----------------------nv~Pd~AlqlYqralavve~~dr~~ma~el~gk  155 (308)
T KOG1585|consen   99 -ELYVECGSPDTAAMALEKAAKALE----------------------NVKPDDALQLYQRALAVVEEDDRDQMAFELYGK  155 (308)
T ss_pred             -HHHHHhCCcchHHHHHHHHHHHhh----------------------cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence             334445555555554444433211                      235666666666665543222      123444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594          306 LGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALS  362 (689)
Q Consensus       306 la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  362 (689)
                      .++++....++++|-..+.+-...      .++....+.....+++...+|..|..+++...+
T Consensus       156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q  218 (308)
T KOG1585|consen  156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ  218 (308)
T ss_pred             hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence            555566666666655555443221      122223333333444444455555555555443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.24  E-value=0.0018  Score=68.14  Aligned_cols=120  Identities=16%  Similarity=0.108  Sum_probs=76.6

Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 005594          314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAE  389 (689)
Q Consensus       314 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~  389 (689)
                      ...+.|.+.++...+..|+..-.++..|.++...|+.++|++.|++++.....-    .-.++.+++++..+.+|++|.+
T Consensus       247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~  326 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE  326 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence            345566666666666666666666666666666666666666666665432222    2256677777777777777777


Q ss_pred             HHHHHHHhCCCc-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhcCC
Q 005594          390 MIEKAIAANPTY-AEAYNNLGVLYRDAGSI-------SLAIDAYEQCLKIDP  433 (689)
Q Consensus       390 ~~~~al~~~p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~p  433 (689)
                      ++.+..+.+.-. .-..+..|.++...|+.       ++|.++|+++-.+..
T Consensus       327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            777777754432 33445567777777777       777777777765544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=98.23  E-value=0.01  Score=61.38  Aligned_cols=386  Identities=11%  Similarity=-0.011  Sum_probs=236.8

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHH-HHhCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHH
Q 005594           51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL-QMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILY  126 (689)
Q Consensus        51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~  126 (689)
                      |...|..-.+.|..+.+.+.|++.+.--|-+.+.|..+-... -..|+.+.-...|++|......+   ...|-..-...
T Consensus        82 W~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~e  161 (577)
T KOG1258|consen   82 WKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFE  161 (577)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHH
Confidence            344677777889999999999999999998888777654443 35577888888899998876543   45677777777


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005594          127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ  206 (689)
Q Consensus       127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  206 (689)
                      ..++++..-...|++.++.--....      ..+...-.. .. .+...-+...+++.++......   .  ......+.
T Consensus       162 n~qks~k~v~~iyeRileiP~~~~~------~~f~~f~~~-l~-~~~~~~l~~~d~~~~l~~~~~~---~--~~~~~~~~  228 (577)
T KOG1258|consen  162 NGQKSWKRVANIYERILEIPLHQLN------RHFDRFKQL-LN-QNEEKILLSIDELIQLRSDVAE---R--SKITHSQE  228 (577)
T ss_pred             hccccHHHHHHHHHHHHhhhhhHhH------HHHHHHHHH-Hh-cCChhhhcCHHHHHHHhhhHHh---h--hhcccccC
Confidence            7888999999999998875322111      111111110 01 1111111111222111110000   0  00000001


Q ss_pred             HHHHHH-HHHHHHHhCCCCHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHHhhHHHHHHHhh
Q 005594          207 YDTALG-CYEKAALERPMYAEAY-------CNMGVIYKNRGDLESAIACYERCLAV-----SPNFEIAKNNMAIALTDLG  273 (689)
Q Consensus       207 ~~~A~~-~~~~al~~~p~~~~~~-------~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~l~  273 (689)
                      ..+-.+ .........+......       ...=.++.......+.+..++..++.     .|-+..-.    ..+....
T Consensus       229 ~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql----~nw~~yL  304 (577)
T KOG1258|consen  229 PLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL----KNWRYYL  304 (577)
T ss_pred             hhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH----HHHHHHh
Confidence            111111 1111111111111111       11112333334445555556655543     22221111    1122223


Q ss_pred             hhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHH
Q 005594          274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHCAEACNNLGVIYKDRDNLDK  352 (689)
Q Consensus       274 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~  352 (689)
                      ......|+++...-.+++++--.....+.|...+......|+.+-|...+.++.++ .+..+.+...-+.+....|++..
T Consensus       305 df~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~  384 (577)
T KOG1258|consen  305 DFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDD  384 (577)
T ss_pred             hhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHH
Confidence            33445789999999999999888888899999999999999999999999998887 46778888888889999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhC--CCc-HHHHHHHHHH-HHHcCCHHHHHHHH
Q 005594          353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE---MIEKAIAAN--PTY-AEAYNNLGVL-YRDAGSISLAIDAY  425 (689)
Q Consensus       353 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~--p~~-~~~~~~la~~-~~~~g~~~~A~~~~  425 (689)
                      |...+++..+..|+..++-........++|+.+.+..   ++.....-.  +.- ...+...++. +.-.++.+.|...+
T Consensus       385 A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l  464 (577)
T KOG1258|consen  385 AKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIIL  464 (577)
T ss_pred             HHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999998889998888888888888999988884   332222211  111 2334444443 44578899999999


Q ss_pred             HHHHhcCCCChhhHhhHHHHhhhccCCC
Q 005594          426 EQCLKIDPDSRNAGQNRLLAMNYINEGH  453 (689)
Q Consensus       426 ~~al~~~p~~~~~~~~~~~~~~~~~~~~  453 (689)
                      .++++..|++...+....-...+...+.
T Consensus       465 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~  492 (577)
T KOG1258|consen  465 LEANDILPDCKVLYLELIRFELIQPSGR  492 (577)
T ss_pred             HHhhhcCCccHHHHHHHHHHHHhCCcch
Confidence            9999999999877766544333333333

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.22  E-value=0.0023  Score=67.36  Aligned_cols=150  Identities=18%  Similarity=0.066  Sum_probs=111.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHH------HHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005594          304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEA------CNNLGVIYK----DRDNLDKAVECYQMALSIKPNFSQSLN  372 (689)
Q Consensus       304 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~------~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~  372 (689)
                      ..+..+..-.|+-+.+++.+.++.+...-. +.+      |+.....+.    .....+.|.+.++...+..|+..-.+.
T Consensus       192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~  271 (468)
T PF10300_consen  192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF  271 (468)
T ss_pred             HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            334444455677777777777776632111 111      111111111    345789999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhh
Q 005594          373 NLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY  448 (689)
Q Consensus       373 ~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  448 (689)
                      ..|+++...|+.++|++.|++++....+.    .-.++.++.++..+++|++|.++|.+..+.+.- ..+...++.+.++
T Consensus       272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~  350 (468)
T PF10300_consen  272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACL  350 (468)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHH
Confidence            99999999999999999999988543332    346789999999999999999999999996655 5677777888888


Q ss_pred             ccCCCh
Q 005594          449 INEGHD  454 (689)
Q Consensus       449 ~~~~~~  454 (689)
                      ...++.
T Consensus       351 ~~l~~~  356 (468)
T PF10300_consen  351 LMLGRE  356 (468)
T ss_pred             Hhhccc
Confidence            877766

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=98.21  E-value=0.00017  Score=73.03  Aligned_cols=108  Identities=19%  Similarity=0.184  Sum_probs=95.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 005594          306 LGVAYGEMLKFDMAIVFYELAFHFNPHCA-EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM  384 (689)
Q Consensus       306 la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  384 (689)
                      .|..+...|+...|+.++..++...|... ....+++.++.+.|....|-..+.+++.+....+-.++.+|.++..+.+.
T Consensus       613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i  692 (886)
T KOG4507|consen  613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI  692 (886)
T ss_pred             ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence            34445668999999999999999988654 45789999999999999999999999999988899999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005594          385 DAAAEMIEKAIAANPTYAEAYNNLGVLYR  413 (689)
Q Consensus       385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~  413 (689)
                      +.|++.++++++++|+++.....|-.+-.
T Consensus       693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  693 SGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            99999999999999999988777766544

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.16  E-value=2.2e-05  Score=67.75  Aligned_cols=113  Identities=26%  Similarity=0.270  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh---hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHH
Q 005594          242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK---LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM  318 (689)
Q Consensus       242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  318 (689)
                      +.|.+.++.....+|.+.+.+.+-+.++..++....   ...-+++|+.-|++++.++|+..++++.+|.++...+... 
T Consensus         8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~-   86 (186)
T PF06552_consen    8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT-   86 (186)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc-
Confidence            444444444455555555555544555444443321   2234677888888889999999999999998887665311 


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005594          319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV  377 (689)
Q Consensus       319 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  377 (689)
                                  |+..          .....|++|..+|++|...+|++......|..+
T Consensus        87 ------------~d~~----------~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   87 ------------PDTA----------EAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             --------------HH----------HHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             ------------CChH----------HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                        0000          001124566666777777777666555554443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.12  E-value=0.00079  Score=67.62  Aligned_cols=189  Identities=16%  Similarity=0.095  Sum_probs=107.7

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 005594           54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV  133 (689)
Q Consensus        54 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  133 (689)
                      ..+..-+..+.++-++.-+++++++|+.+.+|..++.-.  .....+|.++|+++++......    .........|..-
T Consensus       174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~~  247 (539)
T PF04184_consen  174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHFW  247 (539)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccchh
Confidence            334445667777777777777777777777777766532  2335667777777665432111    0000011111110


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 005594          134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTAL  211 (689)
Q Consensus       134 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~  211 (689)
                      +       .......+.     +..+-..++.+..+.|+.++|++.++..++..|.  +..++.+|..++..++.|.++.
T Consensus       248 e-------~~~~Rdt~~-----~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q  315 (539)
T PF04184_consen  248 E-------AWHRRDTNV-----LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ  315 (539)
T ss_pred             h-------hhhccccch-----hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence            0       110001111     1223456777888888888888888888877664  4567888888888888888888


Q ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHHHHc-CC---------------HHHHHHHHHHHHhcCCCcHH
Q 005594          212 GCYEKAALE-RPMYAEAYCNMGVIYKNR-GD---------------LESAIACYERCLAVSPNFEI  260 (689)
Q Consensus       212 ~~~~~al~~-~p~~~~~~~~la~~~~~~-g~---------------~~~A~~~~~~al~~~~~~~~  260 (689)
                      ..+.+--++ -|+.+...+..+.+..+. ++               -..|++.+.++++.+|.-+.
T Consensus       316 ~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~  381 (539)
T PF04184_consen  316 ALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK  381 (539)
T ss_pred             HHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence            888775433 245555555554443221 11               12355667777777776543

The molecular function of this protein is uncertain.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.11  E-value=0.0073  Score=59.14  Aligned_cols=131  Identities=21%  Similarity=0.087  Sum_probs=103.3

Q ss_pred             HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhHHHHHHcC-ChHHHHHHHHHHHhh----CC---C-------
Q 005594          126 YKDEGRLVEAAESYHKALSAD-PSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKI----DP---H-------  189 (689)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~l~~~~~~~~-~~~~A~~~~~~al~~----~~---~-------  189 (689)
                      ...+|+++.|..++.|+-... ..++.....++.++++.|......+ +++.|...++++.+.    ..   .       
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            356899999999999997766 6667777889999999999999999 999999999999887    21   1       


Q ss_pred             CHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594          190 YAPAYYNLGVVYSELMQYD---TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP  256 (689)
Q Consensus       190 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  256 (689)
                      ...++..++.+|...+.++   +|...++.+-...|+.+..+...-.+..+.++.+++.+.+.+++...+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            1346677888888877755   455566666666788788876666677778899999999999887654

It is also involved in sporulation [].

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.08  E-value=0.031  Score=61.56  Aligned_cols=365  Identities=14%  Similarity=0.063  Sum_probs=213.1

Q ss_pred             HHHHHHHHHHHHhCCC----CHHHHHhHHHHHH-HhCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHH
Q 005594           65 VDALALYEIVLEKDSG----NVEAHIGKGICLQ-MQNMGRLAFDSFSEAVKLDPQN------ACAHTHCGILYKDEGRLV  133 (689)
Q Consensus        65 ~~A~~~~~~~l~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~  133 (689)
                      ..|+.+++-+++..+-    .+.+.+.+|.+++ ...++++|..++++++.+...+      ..+...++.++.+.+...
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            4567777777743221    3467888999987 7899999999999998776432      234556788888888777


Q ss_pred             HHHHHHHHHHhcCCCCHHH-HHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC--CCCHHH----HHHHHHHHHHcCC
Q 005594          134 EAAESYHKALSADPSYKPA-AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPA----YYNLGVVYSELMQ  206 (689)
Q Consensus       134 ~A~~~~~~al~~~p~~~~~-~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~----~~~la~~~~~~g~  206 (689)
                       |...+++.++........ +...-+ +.. .......+++..|++.++......  ..++.+    ....+.+....+.
T Consensus       118 -a~~~l~~~I~~~~~~~~~~w~~~fr-ll~-~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~  194 (608)
T PF10345_consen  118 -ALKNLDKAIEDSETYGHSAWYYAFR-LLK-IQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS  194 (608)
T ss_pred             -HHHHHHHHHHHHhccCchhHHHHHH-HHH-HHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence             999999998876552221 111111 111 122222379999999999988764  344332    2334566677787


Q ss_pred             HHHHHHHHHHHHHhCC----------CCHHHHHHHHH--HHHHcCCHHHHHHHHHHH---HhcCCCcH------------
Q 005594          207 YDTALGCYEKAALERP----------MYAEAYCNMGV--IYKNRGDLESAIACYERC---LAVSPNFE------------  259 (689)
Q Consensus       207 ~~~A~~~~~~al~~~p----------~~~~~~~~la~--~~~~~g~~~~A~~~~~~a---l~~~~~~~------------  259 (689)
                      .+++++.++++.....          ....++..+-.  ++...|++..+...+++.   ++...+..            
T Consensus       195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~  274 (608)
T PF10345_consen  195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIP  274 (608)
T ss_pred             chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEE
Confidence            8888888888744211          12334444433  345667766666554443   22211110            


Q ss_pred             --------------------HHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC-------C-------------
Q 005594          260 --------------------IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-------Y-------------  299 (689)
Q Consensus       260 --------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-------~-------------  299 (689)
                                          ......+.+|.--|......+..++|.++++++++.-.+       .             
T Consensus       275 l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~  354 (608)
T PF10345_consen  275 LNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQ  354 (608)
T ss_pred             eecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHH
Confidence                                001112333333344455556666777777777643111       0             


Q ss_pred             ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH------
Q 005594          300 ------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN---PH------CAEACNNLGVIYKDRDNLDKAVECYQ------  358 (689)
Q Consensus       300 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~------  358 (689)
                            .......+....-.+++.+|....+.+....   |.      .+..++..|..+...|+.+.|+..|.      
T Consensus       355 ~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~  434 (608)
T PF10345_consen  355 WLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLL  434 (608)
T ss_pred             HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhh
Confidence                  0134556777788899999998888777652   22      36778889999999999999999998      


Q ss_pred             --HHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC---CcH-----HHHHHHHHHHH--HcCCHHHHH
Q 005594          359 --MALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIA-ANP---TYA-----EAYNNLGVLYR--DAGSISLAI  422 (689)
Q Consensus       359 --~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p---~~~-----~~~~~la~~~~--~~g~~~~A~  422 (689)
                        .+....+...   -+..++..++...+........+.+.++ ++|   +..     .++..+-.++.  ..-...++.
T Consensus       435 ~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k  514 (608)
T PF10345_consen  435 CEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAK  514 (608)
T ss_pred             hhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHH
Confidence              3333333332   2556677777765553332212222322 222   111     12222222221  222335788


Q ss_pred             HHHHHHHhcC
Q 005594          423 DAYEQCLKID  432 (689)
Q Consensus       423 ~~~~~al~~~  432 (689)
                      ..+.++++..
T Consensus       515 ~~l~~~L~~~  524 (608)
T PF10345_consen  515 RHLQEALKMA  524 (608)
T ss_pred             HHHHHHHHHH
Confidence            8888877765

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.08  E-value=0.031  Score=61.52  Aligned_cols=409  Identities=15%  Similarity=0.055  Sum_probs=240.8

Q ss_pred             CchhhHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCC--CH----HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCC---C
Q 005594           46 FEGKDALSYANILR-SRNKFVDALALYEIVLEKDSG--NV----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---N  115 (689)
Q Consensus        46 ~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~  115 (689)
                      .++...+++|.+++ ...+++.|...+++++.....  -.    .+.+.++.++.+.+... |+..+++.++....   .
T Consensus        57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~  135 (608)
T PF10345_consen   57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS  135 (608)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence            56788999999998 678999999999999877533  22    34556788888887766 99999999886443   2


Q ss_pred             HH-HHHHH--HHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC--
Q 005594          116 AC-AHTHC--GILYKDEGRLVEAAESYHKALSADP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--  188 (689)
Q Consensus       116 ~~-~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--  188 (689)
                      .. ..+.+  ...+...+++..|++.++.......  .+...   ...+....+.+....+..+++++.++++.....  
T Consensus       136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~---~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~  212 (608)
T PF10345_consen  136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV---FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL  212 (608)
T ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH---HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc
Confidence            21 12222  3333334799999999999988753  33332   223344445666777888888888887744311  


Q ss_pred             ----C----CHHHHHHHHH--HHHHcCCHHHHHHHHHHHH---Hh---CC---C---C----------------------
Q 005594          189 ----H----YAPAYYNLGV--VYSELMQYDTALGCYEKAA---LE---RP---M---Y----------------------  224 (689)
Q Consensus       189 ----~----~~~~~~~la~--~~~~~g~~~~A~~~~~~al---~~---~p---~---~----------------------  224 (689)
                          +    ...++..+-.  ++...|+++.+...+++.-   +.   .+   .   +                      
T Consensus       213 q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~  292 (608)
T PF10345_consen  213 QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFS  292 (608)
T ss_pred             ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEe
Confidence                1    2334443333  4556777777766655542   11   11   0   0                      


Q ss_pred             --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-----------------HHH--hhHHHHHHHhhhhhh
Q 005594          225 --------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-----------------IAK--NNMAIALTDLGTKVK  277 (689)
Q Consensus       225 --------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----------------~~~--~~~~~~~~~l~~~~~  277 (689)
                              .-++..-|......+..++|.++++++++.-.+..                 ..+  .....++..++....
T Consensus       293 wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~  372 (608)
T PF10345_consen  293 WLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNF  372 (608)
T ss_pred             ecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence                    11233345566677777788888888876422111                 011  112233444555666


Q ss_pred             hcCCHHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhhCCCC---HHHH
Q 005594          278 LEGDINQGVAYYKKALYYN---WH------YADAMYNLGVAYGEMLKFDMAIVFYE--------LAFHFNPHC---AEAC  337 (689)
Q Consensus       278 ~~~~~~~A~~~~~~al~~~---~~------~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~p~~---~~~~  337 (689)
                      ..+++.++....+.+....   |.      .+..++..|..+...|+.+.|...|.        .+....+.+   .-+.
T Consensus       373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~  452 (608)
T PF10345_consen  373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA  452 (608)
T ss_pred             HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence            7889999988888777553   22      36678999999999999999999998        333333333   2344


Q ss_pred             HHHHHHHHHcCCHHH----HHHHHHHHHhcCCCCHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHHhC-C--Cc--
Q 005594          338 NNLGVIYKDRDNLDK----AVECYQMALSIKPNFSQ-----SLNNLGVVYT--VQGKMDAAAEMIEKAIAAN-P--TY--  401 (689)
Q Consensus       338 ~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~al~~~-p--~~--  401 (689)
                      .++..++...+.-..    +.+.+++.-....+.+.     ++..+-.++.  ..-...++...+.++++.. .  ++  
T Consensus       453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~  532 (608)
T PF10345_consen  453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ  532 (608)
T ss_pred             HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence            566666665554333    33444332222112222     2222222221  1223447777777776654 1  11  


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhhHhhH----HHHhhhccCCChHHHHH
Q 005594          402 --AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS---RNAGQNR----LLAMNYINEGHDDKLFE  459 (689)
Q Consensus       402 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~----~~~~~~~~~~~~~~~~~  459 (689)
                        .-++..++..+. .|+..+......++..+....   ....+..    ++...+...|+.+++-.
T Consensus       533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~  598 (608)
T PF10345_consen  533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEE  598 (608)
T ss_pred             HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence              234555666666 788888777777777654444   4333321    22233455666655443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=98.06  E-value=0.0051  Score=63.11  Aligned_cols=295  Identities=15%  Similarity=0.072  Sum_probs=152.8

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHH
Q 005594           55 ANILRSRNKFVDALALYEIVLEKDS-GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--------QNACAHTHCGIL  125 (689)
Q Consensus        55 a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~  125 (689)
                      +++..+.|+++.    +.+.+...+ +..+..+..+......++++++....+++...--        ......+..-..
T Consensus         5 ~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~   80 (352)
T PF02259_consen    5 AEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK   80 (352)
T ss_pred             HHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            566778888888    333333322 2346677777777788999998888888765421        111111111111


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChH--HHHHHHHHHHhh----CCCCHHHHHHHHH
Q 005594          126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ--DGIQKYYEALKI----DPHYAPAYYNLGV  199 (689)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~--~A~~~~~~al~~----~~~~~~~~~~la~  199 (689)
                      +....+.+++..+.......    ......+...|...-..  ...+++  +-+-.++..+-.    .......+...+.
T Consensus        81 lq~L~Elee~~~~~~~~~~~----~~~~~~l~~~W~~Rl~~--~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~  154 (352)
T PF02259_consen   81 LQQLVELEEIIELKSNLSQN----PQDLKSLLKRWRSRLPN--MQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAK  154 (352)
T ss_pred             HhHHHHHHHHHHHHHhhccc----HHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence            11222333333333211100    11111111112111100  011111  111111222211    3455778899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhh
Q 005594          200 VYSELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK  275 (689)
Q Consensus       200 ~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~  275 (689)
                      +..+.|+++.|...+.++....+    ..+.+.+..+.++...|+..+|+..++..+..............  ....+..
T Consensus       155 ~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~--~~~~~~~  232 (352)
T PF02259_consen  155 LARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA--ELKSGLL  232 (352)
T ss_pred             HHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH--HHhhccc
Confidence            99999999999999999887642    25678888899999999999999999988872211100000000  0000000


Q ss_pred             hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-
Q 005594          276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-  348 (689)
Q Consensus       276 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-  348 (689)
                      +..............     ......++..+|......      +..++++..|.++.+.+|....+|..+|..+...- 
T Consensus       233 ~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~  307 (352)
T PF02259_consen  233 ESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLE  307 (352)
T ss_pred             cccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence            000000000000000     000124455555555555      66777777777777777777667766666554321 


Q ss_pred             ----------------CHHHHHHHHHHHHhcCCC
Q 005594          349 ----------------NLDKAVECYQMALSIKPN  366 (689)
Q Consensus       349 ----------------~~~~A~~~~~~al~~~p~  366 (689)
                                      -...|+..|-+++...+.
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  308 SDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             hhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                            124588899999998877

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=0.00034  Score=66.07  Aligned_cols=158  Identities=13%  Similarity=-0.005  Sum_probs=109.9

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcCCHHHHH
Q 005594          279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHC---AEACNNLGVIYKDRDNLDKAV  354 (689)
Q Consensus       279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~A~  354 (689)
                      .|+..+|...+++.++..|.+.-++..--.+++.+|+.+.-...+++.+.. +++.   ..+.-.++..+...|-|++|.
T Consensus       116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE  195 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE  195 (491)
T ss_pred             cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence            567777777777777777777777777777777777777777777777766 5554   444556666777788888888


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Q 005594          355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCL-  429 (689)
Q Consensus       355 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al-  429 (689)
                      +.-++++++++.+..+...++.++...|+++++.+...+.-..-...    ..-|...+.++...+.++.|++.|.+-+ 
T Consensus       196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~  275 (491)
T KOG2610|consen  196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIW  275 (491)
T ss_pred             HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHH
Confidence            88888888888888888888888888888888887776643322111    1124456677777788888888886543 


Q ss_pred             -hcCCCCh
Q 005594          430 -KIDPDSR  436 (689)
Q Consensus       430 -~~~p~~~  436 (689)
                       ++..++.
T Consensus       276 k~l~k~Da  283 (491)
T KOG2610|consen  276 KRLEKDDA  283 (491)
T ss_pred             HHhhccch
Confidence             3444444

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.06  E-value=0.00011  Score=71.88  Aligned_cols=135  Identities=9%  Similarity=0.041  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005594          302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV  380 (689)
Q Consensus       302 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  380 (689)
                      +|..+.....+.+..+.|..+|.++.+..+....+|...|.+... .++.+.|...|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            455666666677778888888888886666678888888888666 4555569999999999888888888888888888


Q ss_pred             cCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005594          381 QGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR  436 (689)
Q Consensus       381 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  436 (689)
                      .|+.+.|...|++++..-+...   .+|......-...|+.+......+++.+..|++.
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~  141 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN  141 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence            9999999999999888766544   5788888888899999999999999999988843

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=9.3e-05  Score=66.60  Aligned_cols=74  Identities=14%  Similarity=0.082  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhh
Q 005594          368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN  441 (689)
Q Consensus       368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  441 (689)
                      ...+.+++.|+...|++-++++.....+...|.+..+++..|.+....=+.++|...|.++|+++|.-..+...
T Consensus       230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr  303 (329)
T KOG0545|consen  230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR  303 (329)
T ss_pred             hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999987766554

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=98.03  E-value=0.0066  Score=62.24  Aligned_cols=260  Identities=12%  Similarity=0.079  Sum_probs=149.3

Q ss_pred             HHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Q 005594          165 TSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALER--------PMYAEAYCNMGVIY  235 (689)
Q Consensus       165 ~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~  235 (689)
                      .+....|+++.-.    +.+...+ +..+..+..+......++++++..+++++...-        +......+..-.-+
T Consensus         6 eaaWrl~~Wd~l~----~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l   81 (352)
T PF02259_consen    6 EAAWRLGDWDLLE----EYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL   81 (352)
T ss_pred             HHHHhcCChhhHH----HHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            4455678888733    3332222 233566666666778899999999888886531        11111111111222


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHH--HHHHHHHHHHhh----CCCCHHHHHHHHHH
Q 005594          236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN--QGVAYYKKALYY----NWHYADAMYNLGVA  309 (689)
Q Consensus       236 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~al~~----~~~~~~~~~~la~~  309 (689)
                      ....+.+++..+.......    ......+...+...-.  ....+++  +-+-.++..+-.    .......+...+.+
T Consensus        82 q~L~Elee~~~~~~~~~~~----~~~~~~l~~~W~~Rl~--~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~  155 (352)
T PF02259_consen   82 QQLVELEEIIELKSNLSQN----PQDLKSLLKRWRSRLP--NMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL  155 (352)
T ss_pred             hHHHHHHHHHHHHHhhccc----HHHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            2233334444433221100    1111111111111000  0011111  111112222211    33456788899999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CC-C-----------------
Q 005594          310 YGEMLKFDMAIVFYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KP-N-----------------  366 (689)
Q Consensus       310 ~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p-~-----------------  366 (689)
                      ..+.|+++.|...+.++....+    ..+.+....+.++...|+..+|+..++..++. .. .                 
T Consensus       156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (352)
T PF02259_consen  156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESL  235 (352)
T ss_pred             HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccc
Confidence            9999999999999999887652    24678888899999999999999988888771 10 0                 


Q ss_pred             ---------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-------
Q 005594          367 ---------------FSQSLNNLGVVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI-------  418 (689)
Q Consensus       367 ---------------~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------  418 (689)
                                     ...++..+|......      +..++++..|+++++.+|+...+|+.+|..+...=+.       
T Consensus       236 ~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~  315 (352)
T PF02259_consen  236 EVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEE  315 (352)
T ss_pred             ccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccc
Confidence                           023555666666666      7788888899999999888888888888776553211       


Q ss_pred             ----------HHHHHHHHHHHhcCCC
Q 005594          419 ----------SLAIDAYEQCLKIDPD  434 (689)
Q Consensus       419 ----------~~A~~~~~~al~~~p~  434 (689)
                                ..|+..|-+++.+.++
T Consensus       316 ~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  316 SSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                      2366666666666665

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=1.4e-05  Score=71.58  Aligned_cols=90  Identities=22%  Similarity=0.226  Sum_probs=45.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 005594          307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA  386 (689)
Q Consensus       307 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  386 (689)
                      |..++...+|+.|+..|.+++.++|..+..+.+.+.++++.++++.+.....+++++.|+....++.+|..+.....+++
T Consensus        17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e   96 (284)
T KOG4642|consen   17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE   96 (284)
T ss_pred             cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence            33444444455555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHH
Q 005594          387 AAEMIEKAIA  396 (689)
Q Consensus       387 A~~~~~~al~  396 (689)
                      |+..++++..
T Consensus        97 aI~~Lqra~s  106 (284)
T KOG4642|consen   97 AIKVLQRAYS  106 (284)
T ss_pred             HHHHHHHHHH
Confidence            5555555533

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.02  E-value=0.0064  Score=65.71  Aligned_cols=82  Identities=24%  Similarity=0.302  Sum_probs=55.6

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHH
Q 005594          349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ----GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLA  421 (689)
Q Consensus       349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A  421 (689)
                      +...+...+.++..  ..+..+...+|.+|..-    .+++.|...|.++....   +...+++|.++..-   .....|
T Consensus       454 ~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a  528 (552)
T KOG1550|consen  454 TLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLA  528 (552)
T ss_pred             chhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHH
Confidence            44555555555543  35567777777777653    35888888888887766   77888888887651   126788


Q ss_pred             HHHHHHHHhcCCCC
Q 005594          422 IDAYEQCLKIDPDS  435 (689)
Q Consensus       422 ~~~~~~al~~~p~~  435 (689)
                      ..+|.++.+.+.+.
T Consensus       529 ~~~~~~~~~~~~~~  542 (552)
T KOG1550|consen  529 KRYYDQASEEDSRA  542 (552)
T ss_pred             HHHHHHHHhcCchh
Confidence            88888887766553

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=0.0001  Score=66.27  Aligned_cols=108  Identities=18%  Similarity=0.092  Sum_probs=95.3

Q ss_pred             cCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCCC----------HHHHHhHHHHHHHhCCHHHHHHHHH
Q 005594           45 GFEGKDALSYANILRSRNKFVDALALYEIVLEK--------DSGN----------VEAHIGKGICLQMQNMGRLAFDSFS  106 (689)
Q Consensus        45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~  106 (689)
                      -.....+-..|+.++..|+|.+|...|+.++..        .|..          ...+.+++.|++..|+|-++++...
T Consensus       175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s  254 (329)
T KOG0545|consen  175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS  254 (329)
T ss_pred             hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence            345667888999999999999999999988642        4444          3477889999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 005594          107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA  152 (689)
Q Consensus       107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  152 (689)
                      .++..+|.|..+++..|......-+.++|...|.++++++|.-...
T Consensus       255 eiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  255 EILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             HHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            9999999999999999999999999999999999999999985543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.01  E-value=0.0007  Score=68.00  Aligned_cols=105  Identities=16%  Similarity=0.122  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHH
Q 005594          336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-NPTYAEAYNNLGVLY  412 (689)
Q Consensus       336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~  412 (689)
                      +...+|.+..+.|+.++|++.++..++..|.  +..+..+|..++..++.+.++...+.+.-+. -|..+...+.-+.+.
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk  340 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK  340 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence            4455677777777777777777777766554  3446677777777777777777776665333 244555555444433


Q ss_pred             HH-------------cC---CHHHHHHHHHHHHhcCCCChhhHh
Q 005594          413 RD-------------AG---SISLAIDAYEQCLKIDPDSRNAGQ  440 (689)
Q Consensus       413 ~~-------------~g---~~~~A~~~~~~al~~~p~~~~~~~  440 (689)
                      .+             .|   --..|.+.+.+|++.||.-+....
T Consensus       341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL  384 (539)
T PF04184_consen  341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL  384 (539)
T ss_pred             HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence            22             11   123478999999999999876543

The molecular function of this protein is uncertain.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=0.025  Score=61.71  Aligned_cols=234  Identities=14%  Similarity=0.063  Sum_probs=140.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594           61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH  140 (689)
Q Consensus        61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  140 (689)
                      -++.+.|.+..+++     +.+..|..+|.+.+..|...+|++.|-++     +++..+........+.|.|++-+.++.
T Consensus      1088 i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred             hhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            35666666666554     34567777777777777777777777554     456666666777777777777777766


Q ss_pred             HHHhcCCCC-HHH--HHHHHHH-----------------HHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005594          141 KALSADPSY-KPA--AECLAIV-----------------LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV  200 (689)
Q Consensus       141 ~al~~~p~~-~~~--~~~~a~~-----------------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  200 (689)
                      -+-+...+. .+.  ...++..                 ....|.-++..+.|+.|.-+|..        ..-|..++..
T Consensus      1158 MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~T 1229 (1666)
T KOG0985|consen 1158 MARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLAST 1229 (1666)
T ss_pred             HHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHH
Confidence            554432211 111  1111100                 22355666666777777666643        3456778888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594          201 YSELMQYDTALGCYEKAALERP-------------------------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVS  255 (689)
Q Consensus       201 ~~~~g~~~~A~~~~~~al~~~p-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  255 (689)
                      +..+|+|..|....+++-....                         -+++-+-.+...|...|-+++-+..++.++.+.
T Consensus      1230 LV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence            8889999999888888733210                         023445567778888999999999999998877


Q ss_pred             CCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcCCHHHHH
Q 005594          256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAI  320 (689)
Q Consensus       256 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~  320 (689)
                      ..+......++..|...        ++++-.+.++-....-        -+....|..+.-+|.+-..|+.|.
T Consensus      1310 RAHMgmfTELaiLYsky--------kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1310 RAHMGMFTELAILYSKY--------KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred             HHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            66555555555554432        3444443333221110        012345666666666666666553

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=0.0054  Score=58.23  Aligned_cols=166  Identities=14%  Similarity=0.046  Sum_probs=134.4

Q ss_pred             HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHH
Q 005594           83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLT  161 (689)
Q Consensus        83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~  161 (689)
                      +-....+.+....|+..+|-..+++.++..|.+..++..--..++.+|+...-...+++++.. +++.+-..    -+.-
T Consensus       104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~s----Yv~G  179 (491)
T KOG2610|consen  104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYS----YVHG  179 (491)
T ss_pred             HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHH----HHHH
Confidence            344455666778899999999999999999999999888888999999999999999999877 66654321    1233


Q ss_pred             HhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Q 005594          162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCNMGVIYKN  237 (689)
Q Consensus       162 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~  237 (689)
                      .++-.+...|-+++|.+.-.+++++++.+..+...++.++...+++.++.+...+.-..-...    ..-|...+..+..
T Consensus       180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE  259 (491)
T KOG2610|consen  180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE  259 (491)
T ss_pred             HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc
Confidence            455667788999999999999999999999999999999999999999999988754332211    2235566888889


Q ss_pred             cCCHHHHHHHHHHHH
Q 005594          238 RGDLESAIACYERCL  252 (689)
Q Consensus       238 ~g~~~~A~~~~~~al  252 (689)
                      .+.|+.|+++|.+-+
T Consensus       260 ~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  260 GAEYEKALEIYDREI  274 (491)
T ss_pred             ccchhHHHHHHHHHH
Confidence            999999999998754

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.96  E-value=2.1e-05  Score=52.08  Aligned_cols=39  Identities=28%  Similarity=0.452  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 005594          371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG  409 (689)
Q Consensus       371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  409 (689)
                      +..+|.+|...|++++|++.|+++++.+|+++.++..+|
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            344444444444444444444444444444444444443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.96  E-value=0.0086  Score=59.62  Aligned_cols=125  Identities=13%  Similarity=0.065  Sum_probs=89.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HhcCCCcHHH
Q 005594          190 YAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMYAEAYCNMGVIYKN---RGDLESAIACYERC-LAVSPNFEIA  261 (689)
Q Consensus       190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~~~~~~~  261 (689)
                      ++++..++-..|....+|+.-+++.+.+-..    -++...+...+|.++.+   .|+.++|+..+..+ ....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            4567778888899999999999999887666    45567788889999999   99999999999994 4555667777


Q ss_pred             HhhHHHHHHHhhhh--hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 005594          262 KNNMAIALTDLGTK--VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK  315 (689)
Q Consensus       262 ~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  315 (689)
                      +...+.+|..+-..  .......++|+..|.++.+.+|+. ..-.+++.++...|.
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~  274 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH  274 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence            77777777665332  122334677777777777777533 333444445555554

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.96  E-value=0.0091  Score=64.54  Aligned_cols=177  Identities=23%  Similarity=0.234  Sum_probs=121.0

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh-----CCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcC--
Q 005594           63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ-----NMGRLAFDSFSEAVKL-----DPQNACAHTHCGILYKDEG--  130 (689)
Q Consensus        63 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--  130 (689)
                      +..+|.++++.+.+.  .+..+...+|.++..-     .|.+.|+.+|+.+.+.     .-.++.+.+.+|.+|.+..  
T Consensus       227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence            356788888887665  5778888889888755     5889999999998771     1125567788888888743  


Q ss_pred             ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcC---ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 005594          131 ---RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG---NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE-  203 (689)
Q Consensus       131 ---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-  203 (689)
                         +.+.|..+|.++-.....+  +       .+.+|.++....   +...|.++|..+.+  -.+..+.+.++.+|.. 
T Consensus       305 ~~~d~~~A~~~~~~aA~~g~~~--a-------~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G  373 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELGNPD--A-------QYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELG  373 (552)
T ss_pred             ccccHHHHHHHHHHHHhcCCch--H-------HHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhC
Confidence               6777888888887765443  2       334455444433   56788888888765  3457778888888764 


Q ss_pred             ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 005594          204 ---LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-GDLESAIACYERCLAV  254 (689)
Q Consensus       204 ---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  254 (689)
                         ..+...|..++.++.+..  .+.+...++..+... +.++.+.-.+....+.
T Consensus       374 ~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~  426 (552)
T KOG1550|consen  374 LGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL  426 (552)
T ss_pred             CCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence               357788888888888776  345555555544433 6666666555554433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.89  E-value=3e-05  Score=51.35  Aligned_cols=42  Identities=21%  Similarity=0.264  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005594          335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV  376 (689)
Q Consensus       335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  376 (689)
                      .++..+|..|...|++++|++.|+++++.+|+++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            355566666666666666666666666666666666666553

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=0.064  Score=58.69  Aligned_cols=63  Identities=13%  Similarity=0.039  Sum_probs=54.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594          189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP  256 (689)
Q Consensus       189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  256 (689)
                      +.+.+|..+|.+..+.|...+|++.|-++     +++..|.....+..+.|.|++-++++.-+-+...
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence            45789999999999999999999999775     6788888999999999999999999988876543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.88  E-value=2.4e-05  Score=77.77  Aligned_cols=109  Identities=18%  Similarity=0.120  Sum_probs=101.3

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK  127 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  127 (689)
                      ++.+-..|..++..+.|+.|+..|.++++++|+.+..+-..+.++++.+++..|+..+.++++.+|....+|+..|....
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m   83 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM   83 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence            34556678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005594          128 DEGRLVEAAESYHKALSADPSYKPAAECL  156 (689)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~  156 (689)
                      ..+++.+|...|++...+.|+.+.+...+
T Consensus        84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~  112 (476)
T KOG0376|consen   84 ALGEFKKALLDLEKVKKLAPNDPDATRKI  112 (476)
T ss_pred             hHHHHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence            99999999999999999999998874443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.83  E-value=0.00059  Score=66.74  Aligned_cols=129  Identities=10%  Similarity=0.021  Sum_probs=107.1

Q ss_pred             hhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 005594          274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE-MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK  352 (689)
Q Consensus       274 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  352 (689)
                      +...+.+..+.|...|.++.+..+....+|...|.+... .++.+.|..+|+.+++..|.+...|......+...++.+.
T Consensus         9 ~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~   88 (280)
T PF05843_consen    9 RFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINN   88 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHH
Confidence            333445569999999999997666778999999999777 5566669999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 005594          353 AVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA  402 (689)
Q Consensus       353 A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  402 (689)
                      |..+|++++..-+...   .+|......-.+.|+.+...++.+++.+..|+..
T Consensus        89 aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~  141 (280)
T PF05843_consen   89 ARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN  141 (280)
T ss_dssp             HHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence            9999999998866654   5888888888899999999999999999988743

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.82  E-value=2.1e-05  Score=48.37  Aligned_cols=32  Identities=53%  Similarity=0.701  Sum_probs=18.8

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005594          391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAI  422 (689)
Q Consensus       391 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  422 (689)
                      |+++++++|+++.+|++||.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            45555566666666666666666666655554

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.0002  Score=67.67  Aligned_cols=103  Identities=19%  Similarity=0.165  Sum_probs=93.0

Q ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 005594           47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC  122 (689)
Q Consensus        47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  122 (689)
                      .++.+-..|+.|++.++|..|+..|.+.|+..-.    ++..|.+.+.|.+..|+|..|+..+.+++..+|.+..+++.-
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            4667788999999999999999999999997544    456889999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005594          123 GILYKDEGRLVEAAESYHKALSADPSY  149 (689)
Q Consensus       123 a~~~~~~g~~~~A~~~~~~al~~~p~~  149 (689)
                      +.|++.+.++++|..+++..+.++.+.
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            999999999999999999987765543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.80  E-value=2.8e-05  Score=77.36  Aligned_cols=131  Identities=16%  Similarity=0.230  Sum_probs=99.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 005594          303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG  382 (689)
Q Consensus       303 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  382 (689)
                      .-.-+...+..+.|+.|+..|.++++++|+++..+.+.+..+.+.+++..|+.-+.++++.+|....+|+..|.+....+
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence            44556667777888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005594          383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA  438 (689)
Q Consensus       383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  438 (689)
                      ++.+|...|++...+.|+++.+...+..+-...     ...-|++++-..++++..
T Consensus        87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v-----s~~~fe~ai~~~~~d~~s  137 (476)
T KOG0376|consen   87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIV-----SEEKFEKAILTPEGDKKS  137 (476)
T ss_pred             HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH-----HHHhhhhcccCCccCCcc
Confidence            888888888888888888887777666654332     334456666555544433

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.79  E-value=0.024  Score=61.42  Aligned_cols=246  Identities=15%  Similarity=0.027  Sum_probs=161.5

Q ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---------CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC-
Q 005594           46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSG---------NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-  115 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-  115 (689)
                      ..++-.+..|.......++.+|..+..++...-+.         ..+..-..|.+....|+.++|++..+.++..-|.+ 
T Consensus       413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~  492 (894)
T COG2909         413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA  492 (894)
T ss_pred             hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence            34666778899999999999999999988765433         13455667888899999999999999999987764 


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCCh--HHHHHHHHHHH----h
Q 005594          116 ----ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT--QDGIQKYYEAL----K  185 (689)
Q Consensus       116 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~--~~A~~~~~~al----~  185 (689)
                          ..++..+|.+..-.|++++|..+..++.+....... +.....+....+.++..+|+.  .+....+...-    .
T Consensus       493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~-~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~  571 (894)
T COG2909         493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV-YHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE  571 (894)
T ss_pred             chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence                446778889999999999999999998887544322 222334455567777778833  33333333222    2


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 005594          186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPM--YAE-AYCNMGVIYKNRGDLESAIACYERCLAVSPNF  258 (689)
Q Consensus       186 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  258 (689)
                      ..|.........+.++...-+++.+.....+.++.    .|.  ... .++.++.+....|+.++|...+.+......+.
T Consensus       572 q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~  651 (894)
T COG2909         572 QKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG  651 (894)
T ss_pred             hcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence            23333333334444444444466666666665553    222  222 23588999999999999999999887765443


Q ss_pred             HHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 005594          259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA  292 (689)
Q Consensus       259 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  292 (689)
                      .......+.++.........+|+..++.....+.
T Consensus       652 ~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         652 QYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             CCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence            2222233333333334445577777777766653

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.78  E-value=4.9e-05  Score=47.13  Aligned_cols=33  Identities=42%  Similarity=0.753  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005594          403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS  435 (689)
Q Consensus       403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  435 (689)
                      .+|+++|.++..+|++++|+.+|+++++++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            467777777777777777777777777777763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.76  E-value=0.049  Score=53.36  Aligned_cols=129  Identities=12%  Similarity=-0.023  Sum_probs=83.7

Q ss_pred             HhCCHHHHHHHHHHHHHcC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc-------CCCCHHHHHHHH
Q 005594           94 MQNMGRLAFDSFSEAVKLD----PQN----ACAHTHCGILYKDEG-RLVEAAESYHKALSA-------DPSYKPAAECLA  157 (689)
Q Consensus        94 ~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~-------~p~~~~~~~~~a  157 (689)
                      +.|+.+.|..++.++-...    |+.    ...+++.|......+ ++++|..+++++.++       .....+......
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~   84 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL   84 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence            4455555555555544322    111    234455566666666 777777777766655       233445555667


Q ss_pred             HHHHHhHHHHHHcCChH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005594          158 IVLTDLGTSLKLAGNTQ---DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP  222 (689)
Q Consensus       158 ~~~~~l~~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  222 (689)
                      .++..++.++...+..+   +|...++.+-...|+.+..+...-.+....++.+++.+.+.+++..-+
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            77888888888877654   455566666666788888886666666668999999999999987644

It is also involved in sporulation [].

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=0.016  Score=53.33  Aligned_cols=184  Identities=16%  Similarity=0.113  Sum_probs=140.3

Q ss_pred             chhhHHHHHHHHHhC-CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhC-CHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594           47 EGKDALSYANILRSR-NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN-MGRLAFDSFSEAVKLDPQNACAHTHCGI  124 (689)
Q Consensus        47 ~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~  124 (689)
                      +-+..+...++.+.. ..-..|+++...++..+|.+...|...-.++..++ +..+-++++.++++.+|+|..+|...-.
T Consensus        41 ~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~  120 (318)
T KOG0530|consen   41 DFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRV  120 (318)
T ss_pred             hHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence            344555555554444 45689999999999999999988888777776554 6788899999999999999999999999


Q ss_pred             HHHHcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005594          125 LYKDEGRLV-EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE  203 (689)
Q Consensus       125 ~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  203 (689)
                      +....|+.. .-++..+.++..+.++-.++..       .-.+....+.++.-+.+..+.++.+-.+-.+|...-.+...
T Consensus       121 ive~l~d~s~rELef~~~~l~~DaKNYHaWsh-------RqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~  193 (318)
T KOG0530|consen  121 IVELLGDPSFRELEFTKLMLDDDAKNYHAWSH-------RQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITN  193 (318)
T ss_pred             HHHHhcCcccchHHHHHHHHhccccchhhhHH-------HHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEe
Confidence            999999888 8889999999988888777443       33444455779999999999998877666666543222211


Q ss_pred             -c-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005594          204 -L-----MQYDTALGCYEKAALERPMYAEAYCNMGVIYKN  237 (689)
Q Consensus       204 -~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  237 (689)
                       .     -..+.-+.+..+.+...|++..+|..|.-++..
T Consensus       194 ~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  194 TKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             ccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence             1     123455677788889999999999998888775

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.76  E-value=2.8e-05  Score=47.84  Aligned_cols=32  Identities=34%  Similarity=0.615  Sum_probs=19.5

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005594          357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA  388 (689)
Q Consensus       357 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  388 (689)
                      |+++++++|+++.+++++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            45566666666666666666666666666554

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.76  E-value=0.05  Score=65.10  Aligned_cols=107  Identities=13%  Similarity=0.140  Sum_probs=72.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----------c
Q 005594          333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PT----------Y  401 (689)
Q Consensus       333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~  401 (689)
                      ..+.|...|.+....|+++.|..++-+|.+..  -+++....|..+...|+...|+..+++.++.+ |+          .
T Consensus      1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence            46778888888888888888888877777665  56777788888888888888888888887652 22          1


Q ss_pred             ------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCChhhHhh
Q 005594          402 ------AEAYNNLGVLYRDAGSI--SLAIDAYEQCLKIDPDSRNAGQN  441 (689)
Q Consensus       402 ------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~  441 (689)
                            ..+...++......|++  +.-+.+|..+.++.|...+-+..
T Consensus      1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~ 1794 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYH 1794 (2382)
T ss_pred             hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceee
Confidence                  12344444555555553  34556777788888755544433

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=0.0019  Score=60.64  Aligned_cols=71  Identities=17%  Similarity=0.126  Sum_probs=48.0

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594          180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP--MYAEAYCNMGVIYKNRGDLESAIACYER  250 (689)
Q Consensus       180 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~  250 (689)
                      +++.+..+|++.++.+.++..+...|+.++|.+.+-..++.+.  .+..+...+-.++...|.-+.+...+++
T Consensus       225 l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR  297 (304)
T COG3118         225 LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR  297 (304)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            3445566788888888888888888888888888877777643  3455666666677666654444444444

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.75  E-value=0.029  Score=67.04  Aligned_cols=133  Identities=13%  Similarity=0.132  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005594          241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI  320 (689)
Q Consensus       241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  320 (689)
                      ..+-+-.+++++-..-.++.....++.++...+++....|.++.|...+-++.+..  -+.+....|..+...|+-..|+
T Consensus      1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred             HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence            44444455554433222223344566777777777777777777777777666555  4567777777777777777777


Q ss_pred             HHHHHHHhhC-CC----------C------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCCHHHHHHHH
Q 005594          321 VFYELAFHFN-PH----------C------AEACNNLGVIYKDRDNL--DKAVECYQMALSIKPNFSQSLNNLG  375 (689)
Q Consensus       321 ~~~~~al~~~-p~----------~------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la  375 (689)
                      ..+++.++.+ |+          .      ..+...++......+++  ..-+++|..+.+..|.....++.+|
T Consensus      1723 ~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1723 SVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred             HHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence            7777777552 21          0      11222333333334432  3345666666666666555555555

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.73  E-value=8.2e-05  Score=46.12  Aligned_cols=33  Identities=36%  Similarity=0.668  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005594          403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS  435 (689)
Q Consensus       403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  435 (689)
                      .+++.+|.++..+|++++|+++|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            567777777777777777777777777777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.68  E-value=0.016  Score=57.78  Aligned_cols=178  Identities=12%  Similarity=0.000  Sum_probs=128.4

Q ss_pred             CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HhcCCCCHHH
Q 005594           81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL----DPQNACAHTHCGILYKD---EGRLVEAAESYHKA-LSADPSYKPA  152 (689)
Q Consensus        81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~  152 (689)
                      +++....+-.+|....+|+.-+++.+..-..    -++.+.+.+.+|.++.+   .|+.++|+..+..+ ....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            4567777888899999999999988877666    45567788888999988   99999999999994 4556667777


Q ss_pred             HHHHHHHHHHhHHH--HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------Hh--
Q 005594          153 AECLAIVLTDLGTS--LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA--------LE--  220 (689)
Q Consensus       153 ~~~~a~~~~~l~~~--~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~--  220 (689)
                      .-..+.++..+-..  .......++|+..|.++.+.+|+ ...-.+++.++...|.-.+...-+++..        +.  
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~  298 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS  298 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence            66667776665332  12234589999999999999965 3444566667777665443332222221        11  


Q ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 005594          221 --RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE  259 (689)
Q Consensus       221 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  259 (689)
                        .-.+...+-.++.+..-.|++++|.+.++++++..|..-
T Consensus       299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence              123455566777888889999999999999999987643

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=97.67  E-value=0.11  Score=58.79  Aligned_cols=335  Identities=13%  Similarity=0.002  Sum_probs=178.4

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHh----C---CHHHHHHHHHHHHHcCCCCHHHHHH
Q 005594           52 LSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQ----N---MGRLAFDSFSEAVKLDPQNACAHTH  121 (689)
Q Consensus        52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~  121 (689)
                      +..-..++..+.|++|+..|+++-...|..   .++.+..|...+.+    |   .+++|+..|++. .-.|.-|--|..
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  557 (932)
T PRK13184        479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLG  557 (932)
T ss_pred             ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHh
Confidence            344567788899999999999999998864   46888888887654    2   466777777664 345667778889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHH--------
Q 005594          122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA--------  193 (689)
Q Consensus       122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------  193 (689)
                      .|.+|.++|++++-++++.-+++..|+.+......-.+.+.+-.+.....  ..|....--++..-|.....        
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  635 (932)
T PRK13184        558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHR--REALVFMLLALWIAPEKISSREEEKFLE  635 (932)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            99999999999999999999999999988765554444444433333221  22222222222222221100        


Q ss_pred             ---------------------HHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594          194 ---------------------YYN--LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER  250 (689)
Q Consensus       194 ---------------------~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  250 (689)
                                           ...  --.+.+..|..---.+.++++....+  ..+..+.-.+...+|+++-+.+....
T Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  713 (932)
T PRK13184        636 ILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRD--YRALADIFYVACDLGNWEFFSQFSDI  713 (932)
T ss_pred             HHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhccc--HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence                                 000  00111223333333445555555443  25555666666777887765554443


Q ss_pred             HHhc-----CCCcHH--HHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCCHH---HH
Q 005594          251 CLAV-----SPNFEI--AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD-AMYNLGVAYGEMLKFD---MA  319 (689)
Q Consensus       251 al~~-----~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~---~A  319 (689)
                      .-+.     .|.+..  ....+...+..+. .......++++.+.+..   ..|.... +....+.-....++-+   .+
T Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (932)
T PRK13184        714 LAEVSDEITFTESIVEQKVEELMFFLKGLE-ALSNKEDYEKAFKHLDN---TDPTLILYAFDLFAIQALLDEEGESIIQL  789 (932)
T ss_pred             HHHHhhhccchHHHHhhhHHHHHHHHHHHH-HHHccccHHHHHhhhhh---CCHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            3211     122111  1111111122221 11223455555543332   2222221 1122222222223322   22


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594          320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL--SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI  395 (689)
Q Consensus       320 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  395 (689)
                      ++.+.+...-..............|.-..++++|-+.+..--  ....+...+....|.-+...++-+-|...|..+.
T Consensus       790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  867 (932)
T PRK13184        790 LQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCR  867 (932)
T ss_pred             HHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence            222222221111223334455566666777777777763321  1123345566666766666777777777776665

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.018  Score=53.00  Aligned_cols=191  Identities=14%  Similarity=0.098  Sum_probs=125.0

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHH
Q 005594           97 MGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDG  176 (689)
Q Consensus        97 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A  176 (689)
                      +|.++..+|+.++..+..                 -..|+..-+.++.++|.+-..+...-.++..+.      .+..+-
T Consensus        41 ~fr~~m~YfRAI~~~~E~-----------------S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~------~dL~~E   97 (318)
T KOG0530|consen   41 DFRDVMDYFRAIIAKNEK-----------------SPRALQLTEDAIRLNPANYTVWQYRRVILRHLM------SDLNKE   97 (318)
T ss_pred             hHHHHHHHHHHHHhcccc-----------------CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhH------HHHHHH
Confidence            455556665555544433                 345556666677777777776665555554443      346667


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594          177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYD-TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS  255 (689)
Q Consensus       177 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  255 (689)
                      ++++.+.++.+|++-.+|...-.+....|++. .-++..+.++..+..+..+|...--+...-+.++.-+.+..+.++.+
T Consensus        98 l~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~D  177 (318)
T KOG0530|consen   98 LEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEED  177 (318)
T ss_pred             HHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            77888888888888888888877777888777 77788888888888888888888888888888888888888888776


Q ss_pred             CCcHHHHhhHHHHHHH-hhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 005594          256 PNFEIAKNNMAIALTD-LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE  312 (689)
Q Consensus       256 ~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  312 (689)
                      -.+..++...-.+... .|  .......+.-+.+..+.+...|++..+|..|.-++..
T Consensus       178 i~NNSAWN~Ryfvi~~~~~--~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  178 IRNNSAWNQRYFVITNTKG--VISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             hhccchhheeeEEEEeccC--CccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence            6555444432111111 00  0001123444566667777777777777777666664

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.0098  Score=56.07  Aligned_cols=56  Identities=25%  Similarity=0.207  Sum_probs=30.4

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHH
Q 005594           51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS  106 (689)
Q Consensus        51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  106 (689)
                      .+..+......|++.+|...|+.++...|++.++...++.|+...|+.+.|...+.
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~  192 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILA  192 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHH
Confidence            34444455555555555555555555555555555555555555555555554443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.60  E-value=0.17  Score=55.10  Aligned_cols=304  Identities=15%  Similarity=0.040  Sum_probs=174.3

Q ss_pred             HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005594           82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL  160 (689)
Q Consensus        82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~  160 (689)
                      .+.+..-+.-+...|...+|++..-.+  .+|... ......+.-+...++..    .+..+++.-|...  ........
T Consensus       347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~--l~~~P~Lv  418 (894)
T COG2909         347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAEL--LASTPRLV  418 (894)
T ss_pred             hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHH--HhhCchHH
Confidence            455556666666777777777654332  122211 11222233333333322    2222222223211  11111223


Q ss_pred             HHhHHHHHHcCChHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HH
Q 005594          161 TDLGTSLKLAGNTQDGIQKYYEALKIDPH---------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AE  226 (689)
Q Consensus       161 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~  226 (689)
                      ...+.......++.+|..+..++...-+.         ..+..-..|.+....|+.++|++..+.++..-|.+     ..
T Consensus       419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~  498 (894)
T COG2909         419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV  498 (894)
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence            34556667788999999888887655333         13445566888889999999999999999886654     45


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH--HHHHHHH----HhhCCCCH
Q 005594          227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG--VAYYKKA----LYYNWHYA  300 (689)
Q Consensus       227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A--~~~~~~a----l~~~~~~~  300 (689)
                      ++..+|.+..-.|++++|..+...+.+....... +..-..+....+.+...+|+...+  ...+...    +...|.+.
T Consensus       499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~-~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~  577 (894)
T COG2909         499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDV-YHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE  577 (894)
T ss_pred             hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence            6788899999999999999999998887544332 222233444455566666733222  2222222    22233333


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCC--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----H
Q 005594          301 DAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHC--AE-ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-----S  368 (689)
Q Consensus       301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~  368 (689)
                      -.....+.++...-+++.+.......++.    .|..  .. .+..++.+....|++++|...+.+...+-.+.     .
T Consensus       578 f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~  657 (894)
T COG2909         578 FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY  657 (894)
T ss_pred             hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence            33333344443333366666666555554    2222  22 23488999999999999999988877653222     1


Q ss_pred             HH--HHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          369 QS--LNNLGVVYTVQGKMDAAAEMIEKA  394 (689)
Q Consensus       369 ~~--~~~la~~~~~~g~~~~A~~~~~~a  394 (689)
                      .+  ..........+|+..+|.....+.
T Consensus       658 ~a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         658 LAAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             HHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence            11  122222334578999988888774

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.55  E-value=0.00012  Score=69.55  Aligned_cols=98  Identities=16%  Similarity=0.096  Sum_probs=91.5

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 005594           51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG  130 (689)
Q Consensus        51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  130 (689)
                      .-..|...+..|.+++|++.|..+++++|.....+...+.+++++++...|+..+..+++++|+....+-..+.....+|
T Consensus       117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg  196 (377)
T KOG1308|consen  117 KKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG  196 (377)
T ss_pred             HHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence            34467778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCC
Q 005594          131 RLVEAAESYHKALSADPS  148 (689)
Q Consensus       131 ~~~~A~~~~~~al~~~p~  148 (689)
                      ++++|...+..+.+++-+
T Consensus       197 ~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  197 NWEEAAHDLALACKLDYD  214 (377)
T ss_pred             chHHHHHHHHHHHhcccc
Confidence            999999999999987654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.48  E-value=0.00028  Score=43.66  Aligned_cols=32  Identities=28%  Similarity=0.500  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594          369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT  400 (689)
Q Consensus       369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  400 (689)
                      .+|+++|.++..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.00065  Score=64.30  Aligned_cols=102  Identities=21%  Similarity=0.194  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005594          336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL  411 (689)
Q Consensus       336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  411 (689)
                      .+-.-|.-|++.++|..|+..|.+.++..-.+    ...|.+.+-+....|+|..|+....+++.++|.+..+++.-+.|
T Consensus        83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc  162 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC  162 (390)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence            34445666666666777777777666654333    33566666666777777777777777777777777777777777


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChh
Q 005594          412 YRDAGSISLAIDAYEQCLKIDPDSRN  437 (689)
Q Consensus       412 ~~~~g~~~~A~~~~~~al~~~p~~~~  437 (689)
                      +..+.++.+|..+.+..++++-+...
T Consensus       163 ~~eLe~~~~a~nw~ee~~~~d~e~K~  188 (390)
T KOG0551|consen  163 LLELERFAEAVNWCEEGLQIDDEAKK  188 (390)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence            77777777777776666666555443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.45  E-value=0.0096  Score=52.40  Aligned_cols=117  Identities=24%  Similarity=0.146  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 005594          318 MAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMI  391 (689)
Q Consensus       318 ~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~  391 (689)
                      +.....++....++.+   ..+...++..+...+++++|+..++.++....+.   .-+-.+|+.+...+|.+++|+..+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            4444445555555444   2345678888999999999999999998654332   336778999999999999999988


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005594          392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS  435 (689)
Q Consensus       392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  435 (689)
                      ....... =.+......|.++...|+.++|+..|+++++.+++.
T Consensus       150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            7643221 013345678999999999999999999999998554

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.45  E-value=0.15  Score=50.88  Aligned_cols=142  Identities=12%  Similarity=-0.044  Sum_probs=82.9

Q ss_pred             cccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 005594           43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC  122 (689)
Q Consensus        43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  122 (689)
                      ..+.+.-.++.+.+.+-.+|.+++-.+.|++...-.|--+.+|...-..-+..+++..-..+|.+++...-+ ...|...
T Consensus        37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~lY  115 (660)
T COG5107          37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWMLY  115 (660)
T ss_pred             cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHHHH
Confidence            345567788899999999999999999999988877777777766666566677888888888888865432 3444332


Q ss_pred             HHHHHHcC---------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---hHHHHHHcCChHHHHHHHHHHHhh
Q 005594          123 GILYKDEG---------RLVEAAESYHKALSADPSYKPAAECLAIVLTD---LGTSLKLAGNTQDGIQKYYEALKI  186 (689)
Q Consensus       123 a~~~~~~g---------~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~---l~~~~~~~~~~~~A~~~~~~al~~  186 (689)
                      -..-.+.+         ..-+|.+..-...-.+|.....|......+..   ++. ...+.+.+.-...|.+++..
T Consensus       116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~k-wEeQqrid~iR~~Y~ral~t  190 (660)
T COG5107         116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGK-WEEQQRIDKIRNGYMRALQT  190 (660)
T ss_pred             HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhcccccc-HHHHHHHHHHHHHHHHHHcC
Confidence            22222211         12233333323333456655554443332211   111 12334455555666666654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.44  E-value=0.0043  Score=54.21  Aligned_cols=95  Identities=20%  Similarity=0.120  Sum_probs=75.8

Q ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHhHHHHHHHhCCHHHHHHHHHH
Q 005594           50 DALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------VEAHIGKGICLQMQNMGRLAFDSFSE  107 (689)
Q Consensus        50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~  107 (689)
                      .+...|......|+...++..+++++......                      ..+...++..+...|++++|+..+++
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            44556777788999999999999999874221                      13555677788889999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594          108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS  144 (689)
Q Consensus       108 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  144 (689)
                      ++..+|.+..++..+..++...|+..+|+..|++..+
T Consensus        88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.43  E-value=0.00041  Score=42.88  Aligned_cols=31  Identities=32%  Similarity=0.502  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594          370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPT  400 (689)
Q Consensus       370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  400 (689)
                      ++..+|.++..+|++++|+++|+++++++|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            4445555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.37  E-value=0.0066  Score=52.99  Aligned_cols=62  Identities=24%  Similarity=0.360  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594          369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK  430 (689)
Q Consensus       369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  430 (689)
                      .+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|++.|+++.+
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            35667788888999999999999999999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.37  E-value=0.19  Score=50.18  Aligned_cols=143  Identities=9%  Similarity=-0.004  Sum_probs=94.4

Q ss_pred             HHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005594           70 LYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY  149 (689)
Q Consensus        70 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  149 (689)
                      -++.-++.+|++...|+.+..-+..++.+++-.+.+++...-.|--+.+|...-.--...+++......|.+++...-+ 
T Consensus        30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-  108 (660)
T COG5107          30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-  108 (660)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence            3455578899999999999999999999999999999999888888888876666566677888888888888865433 


Q ss_pred             HHHHHHHHHHHHHhHHHHHHc------C----ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH---------HcCCHHHH
Q 005594          150 KPAAECLAIVLTDLGTSLKLA------G----NTQDGIQKYYEALKIDPHYAPAYYNLGVVYS---------ELMQYDTA  210 (689)
Q Consensus       150 ~~~~~~~a~~~~~l~~~~~~~------~----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~---------~~g~~~~A  210 (689)
                      .+.|..    |.    .|.+.      |    ..-+|.+..-...-.+|.....|...+..+.         ++.+.+.-
T Consensus       109 ldLW~l----Yl----~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i  180 (660)
T COG5107         109 LDLWML----YL----EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI  180 (660)
T ss_pred             HhHHHH----HH----HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence            222211    11    11111      1    1122333222233346777677776665543         33455666


Q ss_pred             HHHHHHHHHhC
Q 005594          211 LGCYEKAALER  221 (689)
Q Consensus       211 ~~~~~~al~~~  221 (689)
                      ...|.+++...
T Consensus       181 R~~Y~ral~tP  191 (660)
T COG5107         181 RNGYMRALQTP  191 (660)
T ss_pred             HHHHHHHHcCc
Confidence            67778877643

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.36  E-value=0.22  Score=50.60  Aligned_cols=75  Identities=16%  Similarity=0.182  Sum_probs=44.0

Q ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCC-HHHHHHHHHHHHHcCCCCHHHHHH
Q 005594           47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-GRLAFDSFSEAVKLDPQNACAHTH  121 (689)
Q Consensus        47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~  121 (689)
                      +..-|........+.+.+.+--.+|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++.+|+++..|..
T Consensus       104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE  179 (568)
T ss_pred             CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence            444455555555555556666666666666666666666666655555443 566666666666666666655543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.33  E-value=0.22  Score=49.97  Aligned_cols=338  Identities=12%  Similarity=-0.006  Sum_probs=179.1

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---------------
Q 005594           51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---------------  115 (689)
Q Consensus        51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------  115 (689)
                      +..+....+-.++.+.-...+-..-+..|..+......|...++.+++.+|++.+....+.-...               
T Consensus        48 l~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d  127 (549)
T PF07079_consen   48 LGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSD  127 (549)
T ss_pred             HhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhH
Confidence            33333344555666666666666666788888888889999999999999999988776542111               


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhHHHHHH----cCChHHHHHHHHHH---
Q 005594          116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPS-----YKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEA---  183 (689)
Q Consensus       116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~a~~~~~l~~~~~~----~~~~~~A~~~~~~a---  183 (689)
                      ...-...+.++...|++.++...+++.+..--.     +.+.+...   ...+|+.|..    ....+-+..+|+.+   
T Consensus       128 f~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~---vlmlsrSYfLEl~e~~s~dl~pdyYemilfY  204 (549)
T PF07079_consen  128 FFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA---VLMLSRSYFLELKESMSSDLYPDYYEMILFY  204 (549)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH---HHHHhHHHHHHHHHhcccccChHHHHHHHHH
Confidence            112234578899999999999999988764222     22221111   1122222221    11111111111111   


Q ss_pred             ----Hhh------------------------CCCC-----HHHHHHHHHHHH--------------HcCCHHHHHHHHHH
Q 005594          184 ----LKI------------------------DPHY-----APAYYNLGVVYS--------------ELMQYDTALGCYEK  216 (689)
Q Consensus       184 ----l~~------------------------~~~~-----~~~~~~la~~~~--------------~~g~~~~A~~~~~~  216 (689)
                          -..                        -|..     ..++.+..+.|.              -..+.+++....+.
T Consensus       205 ~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~  284 (549)
T PF07079_consen  205 LKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEA  284 (549)
T ss_pred             HHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHH
Confidence                100                        1110     011111100000              00122222222222


Q ss_pred             HHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH------------------------------
Q 005594          217 AALE-----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA------------------------------  261 (689)
Q Consensus       217 al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------------------  261 (689)
                      ....     ...-....-.+-....+.++...|.+++.-...++|+....                              
T Consensus       285 ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~l  364 (549)
T PF07079_consen  285 IASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNL  364 (549)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHH
Confidence            2111     00111122222233445667777777776666666653211                              


Q ss_pred             ----------HhhHHHHHHHhhhhhhhcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHh
Q 005594          262 ----------KNNMAIALTDLGTKVKLEGD-INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV--FYELAFH  328 (689)
Q Consensus       262 ----------~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~  328 (689)
                                ...++..+...+.-+-..|. -++|+..++.+++..+.+.......-..  -...|.+|+.  .+.+.+.
T Consensus       365 we~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~f--vKq~Y~qaLs~~~~~rLlk  442 (549)
T PF07079_consen  365 WEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLF--VKQAYKQALSMHAIPRLLK  442 (549)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHH--HHHHHHHHHhhhhHHHHHH
Confidence                      11111122222333334444 7888888888888887776433221111  1111222221  1222222


Q ss_pred             h---------CC---CCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          329 F---------NP---HCAEACNNLG--VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA  394 (689)
Q Consensus       329 ~---------~p---~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  394 (689)
                      +         .|   .+.+.-+.++  ..++.+|+|.++.-+-.=..++.| .+.++..+|.++....+|++|..++...
T Consensus       443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            1         11   2344444454  457789999999988888888999 8999999999999999999999998754

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.30  E-value=0.00026  Score=67.34  Aligned_cols=85  Identities=20%  Similarity=0.256  Sum_probs=42.7

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594          313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE  392 (689)
Q Consensus       313 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  392 (689)
                      .|.++.|++.+..++.++|.....+...+.++.++++...|+.-+..+++++|+...-+-..+.....+|++++|...+.
T Consensus       127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~  206 (377)
T KOG1308|consen  127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA  206 (377)
T ss_pred             CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555544444444444444555555555555


Q ss_pred             HHHHh
Q 005594          393 KAIAA  397 (689)
Q Consensus       393 ~al~~  397 (689)
                      .+.++
T Consensus       207 ~a~kl  211 (377)
T KOG1308|consen  207 LACKL  211 (377)
T ss_pred             HHHhc
Confidence            54444

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.27  E-value=0.00047  Score=42.60  Aligned_cols=32  Identities=41%  Similarity=0.817  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594          403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD  434 (689)
Q Consensus       403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  434 (689)
                      .+++.+|.+|..+|++++|..+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            46777777777788888888888877777774

...

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.27  E-value=0.11  Score=51.48  Aligned_cols=129  Identities=27%  Similarity=0.326  Sum_probs=80.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-------
Q 005594          281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRD-------  348 (689)
Q Consensus       281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------  348 (689)
                      +..+|..+|+.+.  ....+.+.+.+|.++..    ..+..+|..+|+++.+..... ......++..+..-.       
T Consensus        92 ~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~  169 (292)
T COG0790          92 DKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY  169 (292)
T ss_pred             cHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence            3455555555222  23344555556665555    336666666666666654333 234555666555431       


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005594          349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG  416 (689)
Q Consensus       349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  416 (689)
                      +...|...|.++-...  ++.+...+|.+|..    ..++.+|..+|+++.+...  ....+.++ ++...|
T Consensus       170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence            2347888888877664  67788888887765    3478899999999888766  77888888 666555

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=97.27  E-value=0.4  Score=51.80  Aligned_cols=369  Identities=13%  Similarity=-0.016  Sum_probs=211.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---HcCCHHHHHHH
Q 005594           62 NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK---DEGRLVEAAES  138 (689)
Q Consensus        62 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~  138 (689)
                      +.-++=+.-++.-+..++.+...+..|-.++...|++++-...-.++.++.|..+..|.....-..   ..++-.++...
T Consensus        93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~  172 (881)
T KOG0128|consen   93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL  172 (881)
T ss_pred             ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence            444555666677777888888899999999999999998888888888888888888766553322   34778888999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHH
Q 005594          139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-------YAPAYYNLGVVYSELMQYDTAL  211 (689)
Q Consensus       139 ~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~  211 (689)
                      |++++.-. .....|...+......+..+...++++.-...|.+++..-..       ..+.+...-..|...-..++-+
T Consensus       173 ~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~  251 (881)
T KOG0128|consen  173 FEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI  251 (881)
T ss_pred             HHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            99998643 345556666666666666667778899999999998875222       2344555556666666667777


Q ss_pred             HHHHHHHHhCCCC---HHHHHHHH---HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH
Q 005594          212 GCYEKAALERPMY---AEAYCNMG---VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG  285 (689)
Q Consensus       212 ~~~~~al~~~p~~---~~~~~~la---~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  285 (689)
                      .++...+...-+.   ...+....   .......+++.|..-+.+.+.............-..+...-+.....|....-
T Consensus       252 a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri  331 (881)
T KOG0128|consen  252 ALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRI  331 (881)
T ss_pred             HHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHH
Confidence            8887777654211   11111111   11223445566655554444333222222222222333333444556777777


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCCHHH----------------------------
Q 005594          286 VAYYKKALYYNWHYADAMYNLGVAYGE-MLKFDMAIVFYELAFHFNPHCAEA----------------------------  336 (689)
Q Consensus       286 ~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~----------------------------  336 (689)
                      ...+++++...+.+...|...+...-. ++-.+.+...+.+++...|-....                            
T Consensus       332 ~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~  411 (881)
T KOG0128|consen  332 QLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSM  411 (881)
T ss_pred             HHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH
Confidence            777777776666666666555543311 111111111111111111111000                            


Q ss_pred             ---HHHHHHHHH-HcC-------------CHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 005594          337 ---CNNLGVIYK-DRD-------------NLDKAVECYQMALSI-KPNFSQSLNNLGVVYTV-QGKMDAAAEMIEKAIAA  397 (689)
Q Consensus       337 ---~~~la~~~~-~~g-------------~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~  397 (689)
                         +.+....+. ..+             .+..|..+|...... -......+...|.+... +++.+.|..+.+..+..
T Consensus       412 ~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty  491 (881)
T KOG0128|consen  412 TVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTY  491 (881)
T ss_pred             HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccC
Confidence               111111111 111             223333333333322 11123344455555443 56778888777777666


Q ss_pred             CCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          398 NPTYAE-AYNNLGVLYRDAGSISLAIDAYEQCLKI  431 (689)
Q Consensus       398 ~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~  431 (689)
                      ...... .|.....+-...|+...++..+++|+..
T Consensus       492 ~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~  526 (881)
T KOG0128|consen  492 GGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ  526 (881)
T ss_pred             CcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence            555444 7888888888889999999988888764

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.22  E-value=0.096  Score=46.35  Aligned_cols=120  Identities=22%  Similarity=0.136  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHH
Q 005594          134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTA  210 (689)
Q Consensus       134 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A  210 (689)
                      +.....++....++.+.-+    ......++..+...+++++|+..++.++....+.   ..+-.+++.+...+|++++|
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya----~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~A  145 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYA----VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAA  145 (207)
T ss_pred             hhHHHHHHHHhhccccHHH----HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            4445555555555554433    2235567888888999999999999888654432   44567889999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 005594          211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF  258 (689)
Q Consensus       211 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  258 (689)
                      +..+...... .-.+......|.++...|+-++|...|++++...++.
T Consensus       146 L~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         146 LKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            9988764321 1123446678999999999999999999999887543

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.20  E-value=0.048  Score=54.54  Aligned_cols=135  Identities=12%  Similarity=0.091  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 005594          173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN---RGDLESAIACYE  249 (689)
Q Consensus       173 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~  249 (689)
                      .+.-+.+|++|++.+|++...+..+-.+..+..+.++..+-+++++..+|++...|...-.....   .-.++.....|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            45678899999999999999999988899999999999999999999999998888766554443   335778888888


Q ss_pred             HHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005594          250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF  329 (689)
Q Consensus       250 ~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  329 (689)
                      +++..-.......          .   .........   -..       ...++..+.....+.|..+.|+..++..+++
T Consensus       127 ~~l~~L~~~~~~~----------~---~~~~~~~~~---e~~-------~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  127 KCLRALSRRRSGR----------M---TSHPDLPEL---EEF-------MLYVFLRLCRFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             HHHHHHHHhhccc----------c---ccccchhhH---HHH-------HHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence            8876422211000          0   000000000   000       1245566777788888888888888888887


Q ss_pred             C
Q 005594          330 N  330 (689)
Q Consensus       330 ~  330 (689)
                      +
T Consensus       184 n  184 (321)
T PF08424_consen  184 N  184 (321)
T ss_pred             H
Confidence            4

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.18  E-value=0.29  Score=48.54  Aligned_cols=187  Identities=22%  Similarity=0.220  Sum_probs=135.7

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---
Q 005594           56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ----NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD---  128 (689)
Q Consensus        56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---  128 (689)
                      ......+++..|...+.++-..  .+......++.++...    .+..+|...|+.+.  ...++.+.+.+|.+|..   
T Consensus        49 ~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~g  124 (292)
T COG0790          49 AGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRG  124 (292)
T ss_pred             ccccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCC
Confidence            3344678899999999988663  3347788888887654    36788999999544  45678899999999987   


Q ss_pred             -cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHc-------CChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005594          129 -EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-------GNTQDGIQKYYEALKIDPHYAPAYYNLGVV  200 (689)
Q Consensus       129 -~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~-------~~~~~A~~~~~~al~~~~~~~~~~~~la~~  200 (689)
                       ..+..+|..+|+++.+......      +.....++..+..-       .+...|...|.++-...  +..+...+|.+
T Consensus       125 v~~d~~~A~~~~~~Aa~~g~~~a------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~  196 (292)
T COG0790         125 VPLDLVKALKYYEKAAKLGNVEA------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRM  196 (292)
T ss_pred             cccCHHHHHHHHHHHHHcCChhH------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHH
Confidence             4599999999999998754432      11133344443332       13347888888887765  78889999988


Q ss_pred             HHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhcCCC
Q 005594          201 YSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---------------DLESAIACYERCLAVSPN  257 (689)
Q Consensus       201 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~~~  257 (689)
                      |..    ..++.+|..+|.++.+...  ....+.++ ++...|               +...|...+..+....+.
T Consensus       197 y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  269 (292)
T COG0790         197 YEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD  269 (292)
T ss_pred             HHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence            865    4589999999999998766  78888888 666655               666677777666655443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.12  E-value=0.035  Score=55.51  Aligned_cols=114  Identities=11%  Similarity=-0.030  Sum_probs=84.2

Q ss_pred             HHHHHHHHhCCCCHHHHHhHHHHHHHhCC------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005594           69 ALYEIVLEKDSGNVEAHIGKGICLQMQNM------------GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA  136 (689)
Q Consensus        69 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  136 (689)
                      ..|++.++.+|.+.++|..+....-..-.            .+.-+.+|++|++.+|++...+..+-.+..+..+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45778888999999999988876544422            456778999999999999999988888888888999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh
Q 005594          137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI  186 (689)
Q Consensus       137 ~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~  186 (689)
                      +.+++++..+|++...|..+..    .-......-.++.....|.+++..
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~----~~q~~~~~f~v~~~~~~y~~~l~~  131 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLD----FRQSNFASFTVSDVRDVYEKCLRA  131 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHH----HHHHHhccCcHHHHHHHHHHHHHH
Confidence            9999999999998877654322    111112233566666666666643

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.08  E-value=0.53  Score=49.72  Aligned_cols=80  Identities=14%  Similarity=0.009  Sum_probs=49.0

Q ss_pred             HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH---------HHHHHHHHHHH
Q 005594           57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---------CAHTHCGILYK  127 (689)
Q Consensus        57 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~  127 (689)
                      .+...=..++|+++.    +.+| ++..|..+|......-.++-|...|-+.-.. +.-.         .--...+.+-.
T Consensus       672 ~Lve~vgledA~qfi----EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~  745 (1189)
T KOG2041|consen  672 NLVEAVGLEDAIQFI----EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISA  745 (1189)
T ss_pred             HHHHHhchHHHHHHH----hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhh
Confidence            344444567777664    4455 6789999999888888888888877765321 1110         00123344555


Q ss_pred             HcCCHHHHHHHHHHH
Q 005594          128 DEGRLVEAAESYHKA  142 (689)
Q Consensus       128 ~~g~~~~A~~~~~~a  142 (689)
                      --|++++|.+.|-.+
T Consensus       746 ~~g~feeaek~yld~  760 (1189)
T KOG2041|consen  746 FYGEFEEAEKLYLDA  760 (1189)
T ss_pred             hhcchhHhhhhhhcc
Confidence            567888887777543

>PRK11619 lytic murein transglycosylase; Provisional

Probab=96.97  E-value=0.85  Score=50.17  Aligned_cols=357  Identities=7%  Similarity=-0.101  Sum_probs=173.8

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK  127 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  127 (689)
                      .+..+..|...+..|++.++..+..++ ...|-  ..+..........+.  .....+...++.+|+.+..-........
T Consensus        33 ~r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~--~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~  107 (644)
T PRK11619         33 QRQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMN--QPAVQVTNFIRANPTLPPARSLQSRFVN  107 (644)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhcccc--CCHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence            467899999999999999987776653 33332  222222222222221  1223556667778887766555544433


Q ss_pred             ---HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005594          128 ---DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL  204 (689)
Q Consensus       128 ---~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  204 (689)
                         +.+++..-+.++    ...|.+...       ....+......|+.++|.....++-......+.....+-..+.+.
T Consensus       108 ~La~~~~w~~~~~~~----~~~p~~~~~-------~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~  176 (644)
T PRK11619        108 ELARREDWRGLLAFS----PEKPKPVEA-------RCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQS  176 (644)
T ss_pred             HHHHccCHHHHHHhc----CCCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHc
Confidence               344555444422    123554443       233444556668877777666666544443344443333333333


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----------HHHH-cCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHh
Q 005594          205 MQYDTALGCYEKAALERPMYAEAYCNMGV-----------IYKN-RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL  272 (689)
Q Consensus       205 g~~~~A~~~~~~al~~~p~~~~~~~~la~-----------~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  272 (689)
                      |......-.-+--+....++......+..           .... ..+...+...+    ...+............+..+
T Consensus       177 g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~----~~~~~~~~~~~~~~~~l~Rl  252 (644)
T PRK11619        177 GKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFA----RTTGPTDFTRQMAAVAFASV  252 (644)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHh----hccCCChhhHHHHHHHHHHH
Confidence            33322221111111111111111111111           1110 11111111111    11111110111111222222


Q ss_pred             hhhhhhcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005594          273 GTKVKLEGDINQGVAYYKKALYYNWHYA----DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD  348 (689)
Q Consensus       273 ~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  348 (689)
                           ...+.+.|...+.+......-+.    .+...+|.-....+...+|...+..+..... +....-....+....+
T Consensus       253 -----ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~  326 (644)
T PRK11619        253 -----ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTG  326 (644)
T ss_pred             -----HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHcc
Confidence                 35577888888876644443332    2333444433333335666666665543322 2233333334445778


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------------------H----
Q 005594          349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----------------------A----  402 (689)
Q Consensus       349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~----  402 (689)
                      +++.+...+...-....+.....+.+|..+...|+.++|...|+++... .+.                      .    
T Consensus       327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~  405 (644)
T PRK11619        327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-RGFYPMVAAQRLGEEYPLKIDKAPKPDSAL  405 (644)
T ss_pred             CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCcHHHHHHHHcCCCCCCCCCCCCchhhhh
Confidence            8887777777654434455677888888888888888888888887431 110                      0    


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          403 --EAYNNLGVLYRDAGSISLAIDAYEQCLKI  431 (689)
Q Consensus       403 --~~~~~la~~~~~~g~~~~A~~~~~~al~~  431 (689)
                        ......+..+...|+..+|...+..++..
T Consensus       406 ~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~  436 (644)
T PRK11619        406 TQGPEMARVRELMYWNMDNTARSEWANLVAS  436 (644)
T ss_pred             ccChHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence              01233445566667777777776666654

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.97  E-value=0.0025  Score=59.61  Aligned_cols=78  Identities=26%  Similarity=0.210  Sum_probs=62.7

Q ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594           47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI  124 (689)
Q Consensus        47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  124 (689)
                      ++...+..|......|+.++|..+|+.++...|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+.
T Consensus       115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            344556667777888888888888888888888888888888888888888888888888888888888887766654

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.91  E-value=0.049  Score=55.08  Aligned_cols=143  Identities=17%  Similarity=0.049  Sum_probs=99.6

Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------------C------------CCC---HHHHHHHHH
Q 005594          292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------------N------------PHC---AEACNNLGV  342 (689)
Q Consensus       292 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~---~~~~~~la~  342 (689)
                      .++.+|-+.+++..++.++..+|+.+.|.+.+++++-.              +            +.|   -.+++....
T Consensus        32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~  111 (360)
T PF04910_consen   32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ  111 (360)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence            34668889999999999999999999998888888632              1            112   234455666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHc
Q 005594          343 IYKDRDNLDKAVECYQMALSIKPN-FSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDA  415 (689)
Q Consensus       343 ~~~~~g~~~~A~~~~~~al~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~  415 (689)
                      .+.+.|-+..|.++.+-.+.++|. ++- +++.+-....+.++++--++.++.......     .-+...+..+.++...
T Consensus       112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l  191 (360)
T PF04910_consen  112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL  191 (360)
T ss_pred             HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence            777888888888888888888887 654 444444455566777766666666544211     1234566777777777


Q ss_pred             CCH---------------HHHHHHHHHHHhcCCC
Q 005594          416 GSI---------------SLAIDAYEQCLKIDPD  434 (689)
Q Consensus       416 g~~---------------~~A~~~~~~al~~~p~  434 (689)
                      ++.               ++|...+.+|+...|.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  192 EKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             cCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            777               7788888888777765

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.87  E-value=0.0093  Score=47.41  Aligned_cols=92  Identities=18%  Similarity=0.152  Sum_probs=76.1

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhCCCCH---HHHHhHHHHHHHhCC-----------HHHHHHHHHHHHHcCCCCHHHH
Q 005594           54 YANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNM-----------GRLAFDSFSEAVKLDPQNACAH  119 (689)
Q Consensus        54 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~  119 (689)
                      +|..++.+|++-+|+++.+..+...+++.   ..+...|.++..+..           .-.+++.|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57889999999999999999999888765   566777888765542           2358899999999999998889


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          120 THCGILYKDEGRLVEAAESYHKALSA  145 (689)
Q Consensus       120 ~~la~~~~~~g~~~~A~~~~~~al~~  145 (689)
                      +.+|.-+.....|+++....++++.+
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            99988877777888888888888765

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.81  E-value=0.0011  Score=41.40  Aligned_cols=27  Identities=48%  Similarity=0.797  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          405 YNNLGVLYRDAGSISLAIDAYEQCLKI  431 (689)
Q Consensus       405 ~~~la~~~~~~g~~~~A~~~~~~al~~  431 (689)
                      +.+||.+|..+|++++|+++|++++.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            556666677777777777777664433

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.76  E-value=0.099  Score=48.40  Aligned_cols=196  Identities=13%  Similarity=-0.001  Sum_probs=121.4

Q ss_pred             hCCCHHHHHHHHHHHHHhCCCCH----HHHHhHHHHHHHhCCHHHHHHHHHHHHHcC-----CCC-HHHHHHHHHHHHHc
Q 005594           60 SRNKFVDALALYEIVLEKDSGNV----EAHIGKGICLQMQNMGRLAFDSFSEAVKLD-----PQN-ACAHTHCGILYKDE  129 (689)
Q Consensus        60 ~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~~~~~la~~~~~~  129 (689)
                      ...+.++|+.-|+++++..+...    .++-.+..+.++++++++-.+.|.+.+..-     .+. ......+-..-...
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS  118 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS  118 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence            34589999999999999988754    477788889999999999999998877531     111 11111111111223


Q ss_pred             CCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC------------CCHHHHH
Q 005594          130 GRLVEAAESYHKALSA--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------------HYAPAYY  195 (689)
Q Consensus       130 g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------------~~~~~~~  195 (689)
                      .+.+--.+.|+..+..  +..+...|+   ..-..+|.+++..+++.+-.+.+.+.-....            .-.++|.
T Consensus       119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWF---KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA  195 (440)
T KOG1464|consen  119 KNMDLLQEFYETTLDALKDAKNERLWF---KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA  195 (440)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcceeee---eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence            3333334444443332  111111111   1134577778877888777766666543311            1245555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 005594          196 NLGVVYSELMQYDTALGCYEKAALERPMY--AEAYC----NMGVIYKNRGDLESAIACYERCLAVSPNF  258 (689)
Q Consensus       196 ~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~~~~  258 (689)
                      .-...|..+++..+-...|++++.+...-  +...-    .=|..+.+.|++++|-..|-++++.....
T Consensus       196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs  264 (440)
T KOG1464|consen  196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES  264 (440)
T ss_pred             hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc
Confidence            66678888888888889999998765332  22221    12456788899999999998888765543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.75  E-value=0.0052  Score=57.53  Aligned_cols=64  Identities=28%  Similarity=0.386  Sum_probs=40.4

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhH
Q 005594          379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR  442 (689)
Q Consensus       379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  442 (689)
                      .+.|+.++|...|+.++.+.|++++++..+|......++.-+|-++|-+|+.++|.+.++..|+
T Consensus       127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR  190 (472)
T KOG3824|consen  127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR  190 (472)
T ss_pred             HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence            4456666666666666666666666666666666666666666666666666666666655554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.74  E-value=0.0031  Score=38.81  Aligned_cols=30  Identities=40%  Similarity=0.639  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005594          370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANP  399 (689)
Q Consensus       370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p  399 (689)
                      ++..+|.++..+|++++|+++|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344455555555555555555555555444

...

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.70  E-value=0.003  Score=38.54  Aligned_cols=31  Identities=29%  Similarity=0.415  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594          404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD  434 (689)
Q Consensus       404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  434 (689)
                      +++.+|.++...|++++|++.|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4566666666666666666666666666665

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.70  E-value=0.095  Score=53.04  Aligned_cols=74  Identities=20%  Similarity=0.092  Sum_probs=52.2

Q ss_pred             HHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHc--------------CC------------CC---HHHHHHHHHH
Q 005594           75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--------------DP------------QN---ACAHTHCGIL  125 (689)
Q Consensus        75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p------------~~---~~~~~~la~~  125 (689)
                      +..+|-+.+++..++.++..+|+.+.|.+.+++++-.              ++            .|   ..+++.....
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~  112 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS  112 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence            5678999999999999999999999999999888632              11            11   1233444555


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCC
Q 005594          126 YKDEGRLVEAAESYHKALSADPS  148 (689)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~p~  148 (689)
                      +.+.|-+..|.++.+-.+.++|.
T Consensus       113 L~~RG~~rTAlE~~KlLlsLdp~  135 (360)
T PF04910_consen  113 LGRRGCWRTALEWCKLLLSLDPD  135 (360)
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCC
Confidence            66666666666666666666666

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.69  E-value=0.0082  Score=59.75  Aligned_cols=143  Identities=12%  Similarity=0.011  Sum_probs=104.3

Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594          311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM  390 (689)
Q Consensus       311 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  390 (689)
                      ...|+.-.|-.-+..++...|.++......+.+...+|.|+.+...+..+-..-.....+...+-.-...+|++++|...
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~  379 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST  379 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence            34577777777777778888888887777888888888888888777665554444444555555666778888888888


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCC
Q 005594          391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH  453 (689)
Q Consensus       391 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~  453 (689)
                      .+-.+...-+++++..--+..-..+|-+++|..++++.+.++|....-+.|.+....|..+|+
T Consensus       380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~  442 (831)
T PRK15180        380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN  442 (831)
T ss_pred             HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence            877777666667766666666677788888888888888888877777777666666666664

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.67  Score=44.72  Aligned_cols=205  Identities=14%  Similarity=0.039  Sum_probs=129.5

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCC--------HHHHHhHHHHHHHhCCHHHHHHHHHHHH---HcCCC--C
Q 005594           51 ALSYANILRSRNKFVDALALYEIVLEK--DSGN--------VEAHIGKGICLQMQNMGRLAFDSFSEAV---KLDPQ--N  115 (689)
Q Consensus        51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~--~  115 (689)
                      .++.++.....+++++++..+.+++..  .|.+        ......+|..+...|+.++-.......-   ..-+.  .
T Consensus         7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka   86 (411)
T KOG1463|consen    7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA   86 (411)
T ss_pred             HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence            477888888899999999999999884  2222        2467889999999999887655554432   21111  1


Q ss_pred             HHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh----C--C
Q 005594          116 ACAHTHCGIL-YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI----D--P  188 (689)
Q Consensus       116 ~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~--~  188 (689)
                      ......+-.. ....+..+.-+..+..+++........ +..-.+-..+...|...++|.+|+......+..    +  +
T Consensus        87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRt-FLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~  165 (411)
T KOG1463|consen   87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRT-FLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI  165 (411)
T ss_pred             HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence            1122222222 222334445555565555543332221 112223456778889999999999988776643    2  2


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594          189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALER-----PMY--AEAYCNMGVIYKNRGDLESAIACYERCLAVSP  256 (689)
Q Consensus       189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  256 (689)
                      .-.+++..-...|+...+..+|...+..|-...     |..  +..-..-|.++....+|..|..+|-++++-..
T Consensus       166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~  240 (411)
T KOG1463|consen  166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFD  240 (411)
T ss_pred             ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccc
Confidence            235667777888999999999988887775431     211  12223335666677899999999999987643

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.64  E-value=0.15  Score=44.05  Aligned_cols=99  Identities=12%  Similarity=-0.039  Sum_probs=81.5

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK  127 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  127 (689)
                      ...++.........++.+++..++..+--..|+.++.-..-|..+...|++.+|+..|+.+.+..|..+.+--.++.|+.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            45678888888899999999999999888999999999999999999999999999999998888988988888899998


Q ss_pred             HcCCHHHHHHHHHHHHhcCC
Q 005594          128 DEGRLVEAAESYHKALSADP  147 (689)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p  147 (689)
                      ..|+.+= ..+-.++++..+
T Consensus        90 ~~~D~~W-r~~A~evle~~~  108 (160)
T PF09613_consen   90 ALGDPSW-RRYADEVLESGA  108 (160)
T ss_pred             HcCChHH-HHHHHHHHhcCC
Confidence            8887542 222334444443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.60  E-value=0.97  Score=45.67  Aligned_cols=134  Identities=11%  Similarity=0.004  Sum_probs=89.2

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK  127 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  127 (689)
                      ++....-.......|+.-.|-+-+..++...|.++......+.+...+|+|+.+...+..+-..-.....+...+-....
T Consensus       289 ~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~  368 (831)
T PRK15180        289 IREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLH  368 (831)
T ss_pred             hhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhh
Confidence            33444445556788999999999999999999999999999999999999999998887665544333444555555566


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC
Q 005594          128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP  188 (689)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  188 (689)
                      ..|++++|....+-.+...-++++.       +...+......|-++++...+++.+.++|
T Consensus       369 ~l~r~~~a~s~a~~~l~~eie~~ei-------~~iaa~sa~~l~~~d~~~~~wk~~~~~~~  422 (831)
T PRK15180        369 GLARWREALSTAEMMLSNEIEDEEV-------LTVAAGSADALQLFDKSYHYWKRVLLLNP  422 (831)
T ss_pred             chhhHHHHHHHHHHHhccccCChhh-------eeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence            6777777776666665544444332       22222233344556666666666665544

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.60  E-value=0.49  Score=48.79  Aligned_cols=91  Identities=7%  Similarity=-0.080  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHH
Q 005594           99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ  178 (689)
Q Consensus        99 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~  178 (689)
                      +...+.+.......|+++......+..+...|+.+.|+..++..++     ..........++.++.++.-+.+|..|-.
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-----~~~kQ~~~l~~fE~aw~~v~~~~~~~aad  324 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-----IRMKQVKSLMVFERAWLSVGQHQYSRAAD  324 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4455555555667788887777888888888887777777777665     22233344456677777777777888877


Q ss_pred             HHHHHHhhCCCCHHHH
Q 005594          179 KYYEALKIDPHYAPAY  194 (689)
Q Consensus       179 ~~~~al~~~~~~~~~~  194 (689)
                      .+....+.+.-.--.|
T Consensus       325 ~~~~L~desdWS~a~Y  340 (546)
T KOG3783|consen  325 SFDLLRDESDWSHAFY  340 (546)
T ss_pred             HHHHHHhhhhhhHHHH
Confidence            7777766544433333

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.72  Score=43.35  Aligned_cols=204  Identities=13%  Similarity=0.009  Sum_probs=129.0

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCC--------CCHHHHHhHHHHHHHhCCHHHHHHHHHH---HHHc--CCCCHHH
Q 005594           52 LSYANILRSRNKFVDALALYEIVLEKDS--------GNVEAHIGKGICLQMQNMGRLAFDSFSE---AVKL--DPQNACA  118 (689)
Q Consensus        52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~---al~~--~p~~~~~  118 (689)
                      +++|+.....+++++|+..|.+++....        +...+...++..|...|++..--+....   +...  .|.....
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            7789999999999999999999987621        1235778899999999987654333322   2221  1222222


Q ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh------CCCCH
Q 005594          119 HTHCGILY-KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYA  191 (689)
Q Consensus       119 ~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~  191 (689)
                      ...+...+ .....++.-+..+...++........ ...-.+-..+...++..|+|.+|+......+..      .+.-.
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~-fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li  165 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRK-FLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI  165 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence            22222211 12345555566666555543322211 111223445677889999999999988776643      34456


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594          192 PAYYNLGVVYSELMQYDTALGCYEKAALE-----RPMYAE--AYCNMGVIYKNRGDLESAIACYERCLAVSP  256 (689)
Q Consensus       192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~  256 (689)
                      .++..-..+|....+..++...+..+-..     .|....  .-..-|...+...+|..|..+|-++++-..
T Consensus       166 ~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft  237 (421)
T COG5159         166 TVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT  237 (421)
T ss_pred             ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence            67777888999999988888877766443     232222  223335566777899999999999887543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.47  E-value=0.0055  Score=37.34  Aligned_cols=30  Identities=17%  Similarity=0.112  Sum_probs=13.8

Q ss_pred             HHhHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 005594           85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQ  114 (689)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~  114 (689)
                      ++.+|.++...|++++|++.|+++++..|+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            444444444444444444444444444443

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.42  E-value=0.24  Score=46.00  Aligned_cols=195  Identities=16%  Similarity=0.154  Sum_probs=117.5

Q ss_pred             hCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHhHH
Q 005594           95 QNMGRLAFDSFSEAVKLDPQN----ACAHTHCGILYKDEGRLVEAAESYHKALSADP-----SYKPAAECLAIVLTDLGT  165 (689)
Q Consensus        95 ~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~a~~~~~l~~  165 (689)
                      ..+.++|+..|++++++.+..    ..++..+..+++++|++++-.+.|.+.+..-.     +..+-.      ...+-.
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKs------IN~IlD  113 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKS------INSILD  113 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHH------HHHHHH
Confidence            348899999999999998865    34777888999999999999999988875311     111100      000101


Q ss_pred             HHHHcCChHHHHHHHHHHHhh--CCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------CCHHH
Q 005594          166 SLKLAGNTQDGIQKYYEALKI--DPHYAP----AYYNLGVVYSELMQYDTALGCYEKAALERP------------MYAEA  227 (689)
Q Consensus       166 ~~~~~~~~~~A~~~~~~al~~--~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~  227 (689)
                      .-....+.+--...|+..++.  +..+..    .-..+|.+|+..+.|.+-.+.+++.-....            ...++
T Consensus       114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi  193 (440)
T KOG1464|consen  114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI  193 (440)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence            111122222223333333322  122222    334689999999998888777777644211            12345


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC
Q 005594          228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN  296 (689)
Q Consensus       228 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  296 (689)
                      |..-.++|..+.+..+-...|++++.+...-+.. ..++.+..--|..+.+.|++++|-.-|-++.+..
T Consensus       194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY  261 (440)
T KOG1464|consen  194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY  261 (440)
T ss_pred             HhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence            5555667777777777778888887765432221 1233444444666777778888877776666543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.34  E-value=0.72  Score=48.33  Aligned_cols=27  Identities=22%  Similarity=0.006  Sum_probs=15.6

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIV   74 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~   74 (689)
                      -..|-.+|+..+..=+++-|.+.|.++
T Consensus       585 ~~DW~~LA~~ALeAL~f~~ARkAY~rV  611 (1081)
T KOG1538|consen  585 DTDWRELAMEALEALDFETARKAYIRV  611 (1081)
T ss_pred             cchHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            344555666666666666666665554

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.31  E-value=0.053  Score=42.25  Aligned_cols=67  Identities=18%  Similarity=0.120  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHH
Q 005594           67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN--ACAHTHCGILYKDEGRLV  133 (689)
Q Consensus        67 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~  133 (689)
                      .+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++.  ..+...+-.++...|.-+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            3566778888899999999999999999999999999999888887754  444455555555555443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.30  E-value=1.9  Score=45.76  Aligned_cols=137  Identities=13%  Similarity=0.015  Sum_probs=63.1

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHH
Q 005594           88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL  167 (689)
Q Consensus        88 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~  167 (689)
                      .+.+-.--|++++|.+.|-.+-+.+        ....++.+.|++-...+.++..-.     ......+..++.++|..+
T Consensus       740 ~aei~~~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~-----d~dD~~~e~A~r~ig~~f  806 (1189)
T KOG2041|consen  740 RAEISAFYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGS-----DDDDEGKEDAFRNIGETF  806 (1189)
T ss_pred             hHhHhhhhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCC-----CcchHHHHHHHHHHHHHH
Confidence            3444444566666666664432211        112334445555544444432111     011112334455566666


Q ss_pred             HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594          168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC  247 (689)
Q Consensus       168 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  247 (689)
                      .....+++|.++|.+.-.        .-++..+++...++++-..+.+    .-|++...+-.+|..+...|.-++|.+.
T Consensus       807 a~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~la~----~Lpe~s~llp~~a~mf~svGMC~qAV~a  874 (1189)
T KOG2041|consen  807 AEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEVLAR----TLPEDSELLPVMADMFTSVGMCDQAVEA  874 (1189)
T ss_pred             HHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHHHHH----hcCcccchHHHHHHHHHhhchHHHHHHH
Confidence            666666666666654321        1234445555555544333222    2244455555555555555555555554


Q ss_pred             HH
Q 005594          248 YE  249 (689)
Q Consensus       248 ~~  249 (689)
                      |-
T Consensus       875 ~L  876 (1189)
T KOG2041|consen  875 YL  876 (1189)
T ss_pred             HH
Confidence            43

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.26  E-value=0.013  Score=40.06  Aligned_cols=36  Identities=25%  Similarity=0.282  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhH
Q 005594          404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG  439 (689)
Q Consensus       404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  439 (689)
                      .++.+|..+.++|+|++|..+.+.+|+++|++..+.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            456677777777777777777777777777776654

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.22  E-value=1.7  Score=44.44  Aligned_cols=261  Identities=8%  Similarity=-0.010  Sum_probs=140.6

Q ss_pred             hHHHHHHcCChHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHH--cC-CHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Q 005594          163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPA--YYNLGVVYSE--LM-QYDTALGCYEKAALE---RPMYAEAYCNMGVI  234 (689)
Q Consensus       163 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~la~~~~~--~g-~~~~A~~~~~~al~~---~p~~~~~~~~la~~  234 (689)
                      .........+-+.....|+.+++.-+...--  +...-.-...  .| ....-...++++.+.   .+..+.-+..+..+
T Consensus       288 ~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~  367 (568)
T KOG2396|consen  288 QAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLC  367 (568)
T ss_pred             hhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            4444444445555667777777665553322  2222222211  12 344556666666554   45566677777777


Q ss_pred             HHHcCCHHHH-HHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 005594          235 YKNRGDLESA-IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM  313 (689)
Q Consensus       235 ~~~~g~~~~A-~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  313 (689)
                      +.......++ .......+.   ++...+..........      +.+++--.......++..+.+...-......   .
T Consensus       368 ~~t~~~~r~~a~~l~~e~f~---~s~k~~~~kl~~~~~s------~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~---~  435 (568)
T KOG2396|consen  368 LNTLNEAREVAVKLTTELFR---DSGKMWQLKLQVLIES------KSDFQMLFEELFNHLRKQVCSELLISWASAS---E  435 (568)
T ss_pred             HhccchHhHHHHHhhHHHhc---chHHHHHHHHHHHHhh------cchhHHHHHHHHHHHHHHhcchhHHHHHHHh---h
Confidence            7666554433 333333333   3333333322222210      1122111111111222222221111111111   2


Q ss_pred             CC-HHHHHH--HHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--cCCHHHH
Q 005594          314 LK-FDMAIV--FYELAFHF-NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV--QGKMDAA  387 (689)
Q Consensus       314 g~-~~~A~~--~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A  387 (689)
                      ++ ....+.  .+..+... .++....-..+-..+.+.|-+.+|...|.+...+.|-....+..+..+-..  .-+...+
T Consensus       436 ~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~  515 (568)
T KOG2396|consen  436 GDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANI  515 (568)
T ss_pred             ccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHH
Confidence            22 222211  12222222 344455555666777888889999999999888888777766665554332  2247788


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC
Q 005594          388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI-DPDS  435 (689)
Q Consensus       388 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~  435 (689)
                      .++|+.++.....+++.|...-..-..+|..+.+-..|.+|++. +|..
T Consensus       516 r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~  564 (568)
T KOG2396|consen  516 REYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGES  564 (568)
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence            89999999988889999998888888999999999999998864 4443

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.21  E-value=0.21  Score=51.78  Aligned_cols=133  Identities=20%  Similarity=0.145  Sum_probs=108.0

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594          313 MLKFDMAIVFYELAFHFNPHCAEACNN--LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM  390 (689)
Q Consensus       313 ~g~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  390 (689)
                      .+....++..+...+.+++.+++.+..  +...+...+....+...+..++..+|++..+..+|+......|....+...
T Consensus        44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~  123 (620)
T COG3914          44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD  123 (620)
T ss_pred             cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH
Confidence            344444677777777788888877544  477777888888999999999999999999999999998888877776666


Q ss_pred             HHH-HHHhCCCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHH
Q 005594          391 IEK-AIAANPTYAEAYNNL------GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA  445 (689)
Q Consensus       391 ~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  445 (689)
                      +.. +....|.+.+....+      +.....+|+..++....+++..+.|+++.....++.+
T Consensus       124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         124 ISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            555 888889887766555      8999999999999999999999999998877776555

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.18  E-value=0.011  Score=36.82  Aligned_cols=28  Identities=46%  Similarity=0.693  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005594          370 SLNNLGVVYTVQGKMDAAAEMIEKAIAA  397 (689)
Q Consensus       370 ~~~~la~~~~~~g~~~~A~~~~~~al~~  397 (689)
                      ++.+||.+|...|++++|+++|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4667888888888888888888885543

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=96.15  E-value=1.4  Score=42.66  Aligned_cols=208  Identities=17%  Similarity=0.103  Sum_probs=119.5

Q ss_pred             HhHHHHHHHhCCHHHHHHHHHHHHHc--CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005594           86 IGKGICLQMQNMGRLAFDSFSEAVKL--DPQN--------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC  155 (689)
Q Consensus        86 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  155 (689)
                      ...+......++.++++..+...+..  .|.+        ......+|..+.+.|+.++-....+..-........+.  
T Consensus         8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kak--   85 (411)
T KOG1463|consen    8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAK--   85 (411)
T ss_pred             HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHH--
Confidence            44555666677788999999988874  2221        24568899999999998876666554432211111110  


Q ss_pred             HHHHHHHhHHH-HHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Q 005594          156 LAIVLTDLGTS-LKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALE------RP  222 (689)
Q Consensus       156 ~a~~~~~l~~~-~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p  222 (689)
                      .+.+...+-.. ....+..+.-+..+...++.....      ...-..+..+|...++|.+|+......+..      .+
T Consensus        86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~  165 (411)
T KOG1463|consen   86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI  165 (411)
T ss_pred             HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence            01111112111 122233444455555554432211      123346788899999999999888777542      22


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh
Q 005594          223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY  295 (689)
Q Consensus       223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  295 (689)
                      .-.+++..-..+|....+..+|...+..+-.....-.-.....+.+-..-|.++....+|..|..+|-++++-
T Consensus       166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEg  238 (411)
T KOG1463|consen  166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEG  238 (411)
T ss_pred             ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcc
Confidence            3355666667788888888888888777654322111111122333344455566667777777777777654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.14  E-value=0.11  Score=44.72  Aligned_cols=97  Identities=15%  Similarity=0.109  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005594          336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA  415 (689)
Q Consensus       336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  415 (689)
                      .+..+..+-...++.+++...+...--+.|+.++.-..-|+++...|++.+|+..++.+.+..|..+.+--.++.|+..+
T Consensus        12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~   91 (160)
T PF09613_consen   12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL   91 (160)
T ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence            44455555666677777777777777778888888888888888888888888888887777777777777777887777


Q ss_pred             CCHHHHHHHHHHHHhcCC
Q 005594          416 GSISLAIDAYEQCLKIDP  433 (689)
Q Consensus       416 g~~~~A~~~~~~al~~~p  433 (689)
                      |+.+ =..+-.++++..+
T Consensus        92 ~D~~-Wr~~A~evle~~~  108 (160)
T PF09613_consen   92 GDPS-WRRYADEVLESGA  108 (160)
T ss_pred             CChH-HHHHHHHHHhcCC
Confidence            7753 2233344555444

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.12  E-value=0.044  Score=42.70  Aligned_cols=49  Identities=29%  Similarity=0.295  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005594          387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS  435 (689)
Q Consensus       387 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  435 (689)
                      .+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            3556777888888888888888888888888888888888888888776

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.11  E-value=0.28  Score=39.41  Aligned_cols=87  Identities=11%  Similarity=0.148  Sum_probs=57.9

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCcH---
Q 005594          345 KDRDNLDKAVECYQMALSIKPNF------------SQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYA---  402 (689)
Q Consensus       345 ~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~---  402 (689)
                      +..|-|++|...++++++....-            .-++..|+..+..+|+|++++...++++.       ++.+..   
T Consensus        20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW   99 (144)
T PF12968_consen   20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW   99 (144)
T ss_dssp             HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence            44567777777777777653221            23566677778888888877776666664       344433   


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          403 -EAYNNLGVLYRDAGSISLAIDAYEQCLKI  431 (689)
Q Consensus       403 -~~~~~la~~~~~~g~~~~A~~~~~~al~~  431 (689)
                       .+.++.+..+..+|+.++|+..|+++-++
T Consensus       100 IaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen  100 IAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence             35567888899999999999999988664

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.08  E-value=0.029  Score=38.31  Aligned_cols=36  Identities=14%  Similarity=-0.022  Sum_probs=17.8

Q ss_pred             HHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHH
Q 005594           84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH  119 (689)
Q Consensus        84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  119 (689)
                      .++.+|..+++.|+|++|..+.+.+++..|+|..+.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            344555555555555555555555555555554443

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.08  E-value=2.2  Score=44.26  Aligned_cols=66  Identities=18%  Similarity=0.197  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCC
Q 005594          370 SLNNLGVVYTVQGKMDAAAEMIEKAIAA---NPT----YAEAYNNLGVLYRDAGS-ISLAIDAYEQCLKIDPDS  435 (689)
Q Consensus       370 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~  435 (689)
                      -+..+|.++..+|+...|..+|+..++.   ..+    .|-+++.+|.++..+|. ..++..++.+|-+...++
T Consensus       451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence            4667899999999999999999988854   111    26799999999999999 999999999999877654

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.07  E-value=1.3  Score=41.67  Aligned_cols=206  Identities=11%  Similarity=-0.002  Sum_probs=117.7

Q ss_pred             HhHHHHHHHhCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhcCCCCHHHHH
Q 005594           86 IGKGICLQMQNMGRLAFDSFSEAVKLDP--------QNACAHTHCGILYKDEGRLVEAAESYHKA---LSADPSYKPAAE  154 (689)
Q Consensus        86 ~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~~p~~~~~~~  154 (689)
                      ..++.-..+.+++++|+..|.+.+...-        ....+...++.+|...|++..-.+.....   .........   
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~---   83 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKI---   83 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhH---
Confidence            5567778889999999999999997622        12346788999999999876544433322   211111000   


Q ss_pred             HHHHHHHHhHH-HHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------C
Q 005594          155 CLAIVLTDLGT-SLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALE------R  221 (689)
Q Consensus       155 ~~a~~~~~l~~-~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~  221 (689)
                        ..+...+-. .-.....++.-+..+...++.....      ...-..+..++++.|+|.+|+......+..      .
T Consensus        84 --~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK  161 (421)
T COG5159          84 --TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDK  161 (421)
T ss_pred             --HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCc
Confidence              111111111 1112234444555554444432111      123345677888999999999888776542      3


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC
Q 005594          222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN  296 (689)
Q Consensus       222 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  296 (689)
                      +.....+..-..+|....+..++...+..+-.....-.-.....+..-..-|..+....++..|..+|-++++-.
T Consensus       162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf  236 (421)
T COG5159         162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF  236 (421)
T ss_pred             cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence            445566777778888888877777776665433211100011123333344555566677777877777776543

>PRK10941 hypothetical protein; Provisional

Probab=95.98  E-value=0.095  Score=50.29  Aligned_cols=68  Identities=12%  Similarity=0.185  Sum_probs=35.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 005594          338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY  405 (689)
Q Consensus       338 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  405 (689)
                      .++-.++.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+.
T Consensus       185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~  252 (269)
T PRK10941        185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE  252 (269)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence            34444455555555555555555555555555555555555555555555555555555555544433

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.91  E-value=0.45  Score=40.33  Aligned_cols=86  Identities=10%  Similarity=-0.042  Sum_probs=72.1

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK  127 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  127 (689)
                      ...++.........++.+++..++..+--..|+.++.-..-|..+...|++.+|+..|+...+..+..+...-.++.|+.
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~   89 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN   89 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence            34566677777778999999999988888889999999999999999999999999999988888777888888888888


Q ss_pred             HcCCHH
Q 005594          128 DEGRLV  133 (689)
Q Consensus       128 ~~g~~~  133 (689)
                      .+|+.+
T Consensus        90 al~Dp~   95 (153)
T TIGR02561        90 AKGDAE   95 (153)
T ss_pred             hcCChH
Confidence            888754

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK10941 hypothetical protein; Provisional

Probab=95.88  E-value=0.14  Score=49.23  Aligned_cols=69  Identities=19%  Similarity=0.110  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 005594          194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK  262 (689)
Q Consensus       194 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  262 (689)
                      ..++-.+|.+.++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|...++..++..|+++.+.
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~  252 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE  252 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence            344555666666666666666666666666666666666666666666666666666666666655443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.81  E-value=0.32  Score=39.03  Aligned_cols=95  Identities=20%  Similarity=0.133  Sum_probs=71.9

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC------------CHHHHHhHHHHHHHhCCHHHHHHHHHHHHH-------c
Q 005594           51 ALSYANILRSRNKFVDALALYEIVLEKDSG------------NVEAHIGKGICLQMQNMGRLAFDSFSEAVK-------L  111 (689)
Q Consensus        51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~  111 (689)
                      .+..|...+..|-|++|...++++++....            +.-++..++.++..+|+|++++....++|.       +
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL   91 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL   91 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence            355677788899999999999999886322            235677889999999999998888877775       3


Q ss_pred             CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          112 DPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSA  145 (689)
Q Consensus       112 ~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~  145 (689)
                      +.+..    .+-+..+..+...|+.++|+..|+.+-+.
T Consensus        92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            44443    34567788899999999999999988653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.80  E-value=0.019  Score=51.70  Aligned_cols=65  Identities=29%  Similarity=0.527  Sum_probs=58.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHh
Q 005594          376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ  440 (689)
Q Consensus       376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  440 (689)
                      ....+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|++.....
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa   67 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAA   67 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchh
Confidence            34567789999999999999999999999999999999999999999999999999999865443

>PRK11619 lytic murein transglycosylase; Provisional

Probab=95.75  E-value=4.2  Score=44.90  Aligned_cols=318  Identities=12%  Similarity=-0.027  Sum_probs=178.5

Q ss_pred             HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005594           83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD  162 (689)
Q Consensus        83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~  162 (689)
                      ...+.-+.-....|++..+.....+ +.-.|-  ..+.....+....+..  ....+...++.+|+.+.........+..
T Consensus        34 r~~f~~A~~a~~~g~~~~~~~~~~~-l~d~pL--~~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~  108 (644)
T PRK11619         34 RQRYQQIKQAWDNRQMDVVEQLMPT-LKDYPL--YPYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPPARSLQSRFVNE  108 (644)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHh-ccCCCc--HhHHHHHHHHhccccC--CHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence            4567777788888998887665544 333332  2222222222222221  1224555666778777665444443433


Q ss_pred             hHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH------------
Q 005594          163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN------------  230 (689)
Q Consensus       163 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------  230 (689)
                      ++    ..+++..-+..+    ...|.+.......+......|+.++|.....++.......+.....            
T Consensus       109 La----~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt  180 (644)
T PRK11619        109 LA----RREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQD  180 (644)
T ss_pred             HH----HccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCC
Confidence            33    356776666533    2347788888888899999999988888777775544333333333            


Q ss_pred             ------HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC-HHHH
Q 005594          231 ------MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-ADAM  303 (689)
Q Consensus       231 ------la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~  303 (689)
                            ........|+...|......+    +...   ..++..+..+      ..+...+...+..   ..+.. ....
T Consensus       181 ~~d~w~R~~~al~~~~~~lA~~l~~~l----~~~~---~~~a~a~~al------~~~p~~~~~~~~~---~~~~~~~~~~  244 (644)
T PRK11619        181 PLAYLERIRLAMKAGNTGLVTYLAKQL----PADY---QTIASALIKL------QNDPNTVETFART---TGPTDFTRQM  244 (644)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhc----ChhH---HHHHHHHHHH------HHCHHHHHHHhhc---cCCChhhHHH
Confidence                  333344445554444333322    1110   0111122111      1122222222111   11121 1222


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005594          304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT  379 (689)
Q Consensus       304 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  379 (689)
                      ..++..-....+.+.|...+.+......-+    ..++..+|.-....+...+|..++..+.... .+.+.......+..
T Consensus       245 ~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al  323 (644)
T PRK11619        245 AAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMAL  323 (644)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHH
Confidence            333444445667788888888765544332    2334455544444433678888887765433 23344444445556


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594          380 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK  430 (689)
Q Consensus       380 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  430 (689)
                      ..++++.....+...-....+.....+.+|..+..+|+.++|..+|+++..
T Consensus       324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            889999888888776444445678999999999999999999999999854

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.75  E-value=0.13  Score=40.99  Aligned_cols=103  Identities=13%  Similarity=0.011  Sum_probs=58.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 005594          306 LGVAYGEMLKFDMAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG  382 (689)
Q Consensus       306 la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  382 (689)
                      ++.-++..|++-+|+++.+..+..++++.   ..+..-|.++.++            +.+.+..+...-+          
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~y----------   59 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRY----------   59 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHH----------
Confidence            34556677777777777777776665554   3333344443322            2222211111111          


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI  431 (689)
Q Consensus       383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  431 (689)
                       .-.+++.+.++..+.|..+..++.+|.-+.....|+++..--+++|.+
T Consensus        60 -Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   60 -LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             -HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence             224667777777777777777777777666666666776666666654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.70  E-value=2  Score=45.31  Aligned_cols=49  Identities=8%  Similarity=-0.115  Sum_probs=29.4

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHH
Q 005594           56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV  109 (689)
Q Consensus        56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  109 (689)
                      ..+...|.+++|...----+.     ..-|..+|...+..=+++-|.+.|.++-
T Consensus       564 ~q~Ieag~f~ea~~iaclgVv-----~~DW~~LA~~ALeAL~f~~ARkAY~rVR  612 (1081)
T KOG1538|consen  564 YQYIERGLFKEAYQIACLGVT-----DTDWRELAMEALEALDFETARKAYIRVR  612 (1081)
T ss_pred             hhhhhccchhhhhccccccee-----cchHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence            456778888887664221111     1235566666666667777777777653

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.65  E-value=0.14  Score=47.55  Aligned_cols=92  Identities=25%  Similarity=0.238  Sum_probs=48.6

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHH-------HHHHHHHHHhhCCC------CHHHHH
Q 005594          129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD-------GIQKYYEALKIDPH------YAPAYY  195 (689)
Q Consensus       129 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~-------A~~~~~~al~~~~~------~~~~~~  195 (689)
                      ...+++|++.|.-++-...-.......+|.++..++.+|...|+.+.       |++.|++++.....      ...+.+
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            44566666666655532111111111356667777777777777443       33344444333211      134555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh
Q 005594          196 NLGVVYSELMQYDTALGCYEKAALE  220 (689)
Q Consensus       196 ~la~~~~~~g~~~~A~~~~~~al~~  220 (689)
                      .+|.+..+.|++++|.++|.+++..
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            6666666666666666666666654

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.64  E-value=1.3  Score=38.42  Aligned_cols=132  Identities=15%  Similarity=0.112  Sum_probs=95.4

Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C--HHHHHHHHHHHHHcCC
Q 005594          310 YGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--F--SQSLNNLGVVYTVQGK  383 (689)
Q Consensus       310 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~la~~~~~~g~  383 (689)
                      +...++.++|+..|...-+..-..  ..+.+..+.+..+.|+...|+..|..+-.-.|.  -  ..+...-+.++...|-
T Consensus        68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs  147 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS  147 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence            456678889998888877664433  445677888999999999999999987665432  1  2245566777888898


Q ss_pred             HHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhH
Q 005594          384 MDAAAEMIEKAI-AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR  442 (689)
Q Consensus       384 ~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  442 (689)
                      |++-....+..- ..+|-...+...||..-.+.|++.+|...|.+... +...+....++
T Consensus       148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqR  206 (221)
T COG4649         148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQR  206 (221)
T ss_pred             HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHH
Confidence            888766655432 22455567888899999999999999999999887 44444444443

>smart00028 TPR Tetratricopeptide repeats

Probab=95.63  E-value=0.019  Score=34.38  Aligned_cols=31  Identities=39%  Similarity=0.673  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594          404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD  434 (689)
Q Consensus       404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  434 (689)
                      ++..+|.++..+|++++|..+|+++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4566777777777777777777777776664

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.48  E-value=1.5  Score=38.08  Aligned_cols=29  Identities=17%  Similarity=0.127  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005594          191 APAYYNLGVVYSELMQYDTALGCYEKAAL  219 (689)
Q Consensus       191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  219 (689)
                      ..+.-.||..-++.|++.+|.+.|..+..
T Consensus       167 ~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         167 HSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            33444455555555555555555554433

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.27  E-value=0.19  Score=41.47  Aligned_cols=74  Identities=20%  Similarity=0.195  Sum_probs=58.3

Q ss_pred             CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHh
Q 005594          367 FSQSLNNLGVVYTVQG---KMDAAAEMIEKAIA-ANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ  440 (689)
Q Consensus       367 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  440 (689)
                      ..+..+++++++....   +..+.+.+++..++ -.|+. -+..+.|+..+.+.|+|++++.+.+..++..|+|..+..
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            3557788888887754   46678888888886 44433 567888999999999999999999999999999887643

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=95.12  E-value=0.18  Score=57.33  Aligned_cols=162  Identities=20%  Similarity=0.190  Sum_probs=124.1

Q ss_pred             HHhhhhhhhcCCHHHHHH------HHH-HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCH
Q 005594          270 TDLGTKVKLEGDINQGVA------YYK-KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHCA  334 (689)
Q Consensus       270 ~~l~~~~~~~~~~~~A~~------~~~-~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~  334 (689)
                      ...|......+.+.++.+      ++. ..-.+.|.....+..++.++...+++++|+..-.++.-+        .|+..
T Consensus       936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen  936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred             hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence            334444445666776666      444 223456778889999999999999999999988877654        35567


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------
Q 005594          335 EACNNLGVIYKDRDNLDKAVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP-------  399 (689)
Q Consensus       335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------  399 (689)
                      ..+.+++...+..++...|+..+.++..+        .|.-.....+++.++...++++.|+.+++.|+..+.       
T Consensus      1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred             HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence            78889999999999999999999988765        355555778899999999999999999999998632       


Q ss_pred             -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          400 -TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI  431 (689)
Q Consensus       400 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  431 (689)
                       .....+..+++.+..++++..|....+....+
T Consensus      1096 l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence             23456777888888888888888777766554

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.07  E-value=0.23  Score=46.09  Aligned_cols=29  Identities=14%  Similarity=0.196  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          335 EACNNLGVIYKDRDNLDKAVECYQMALSI  363 (689)
Q Consensus       335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  363 (689)
                      .+.+.+|.+..+.|++++|.++|.+++..
T Consensus       166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            45555666666666666666666666554

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.89  E-value=0.44  Score=40.36  Aligned_cols=77  Identities=13%  Similarity=0.124  Sum_probs=50.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 005594          342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI  418 (689)
Q Consensus       342 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  418 (689)
                      ..-...++.+++...+...--+.|+.++.-..-|+++...|++.+|+..++...+..+..+-..-.++.|+..+|+.
T Consensus        18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            33344566666666666666666777666666677777777777777777766666666666666666666666664

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.82  E-value=0.15  Score=51.85  Aligned_cols=103  Identities=15%  Similarity=0.064  Sum_probs=88.6

Q ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh---CCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005594           47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ---NMGRLAFDSFSEAVKLDPQNACAHTHCG  123 (689)
Q Consensus        47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la  123 (689)
                      ..+.....|.-.+..+....|+..|.+++...|.....+...+.++++.   |+.-.|+.....+++++|....+++.++
T Consensus       373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la  452 (758)
T KOG1310|consen  373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA  452 (758)
T ss_pred             HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence            3455555666666667789999999999999999999999999988876   4667788889999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005594          124 ILYKDEGRLVEAAESYHKALSADPSY  149 (689)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~~  149 (689)
                      .++...+++.+|+.+...+....|.+
T Consensus       453 ~aL~el~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  453 RALNELTRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             HHHHHHhhHHHhhhhHHHHhhcCchh
Confidence            99999999999999998888888854

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.77  E-value=0.053  Score=48.97  Aligned_cols=61  Identities=23%  Similarity=0.317  Sum_probs=43.7

Q ss_pred             HHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005594           91 CLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP  151 (689)
Q Consensus        91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  151 (689)
                      ...+.++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|.+.|++.++++|.+..
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            3445667777777777777777777777777777777777777777777777777776543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.71  E-value=0.099  Score=53.14  Aligned_cols=88  Identities=17%  Similarity=0.100  Sum_probs=59.9

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005594          348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV---QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA  424 (689)
Q Consensus       348 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  424 (689)
                      +....|+..|.+++...|.....+.+.+.++.+   .|+.-.|+.....+++++|....+++.|+.++..++++.+|+++
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~  467 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC  467 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence            345566677777777777777777776666665   34555666666667777777777777777777777777777777


Q ss_pred             HHHHHhcCCCC
Q 005594          425 YEQCLKIDPDS  435 (689)
Q Consensus       425 ~~~al~~~p~~  435 (689)
                      ...+....|.+
T Consensus       468 ~~alq~~~Ptd  478 (758)
T KOG1310|consen  468 HWALQMSFPTD  478 (758)
T ss_pred             HHHHhhcCchh
Confidence            76666666644

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.69  E-value=0.6  Score=41.96  Aligned_cols=102  Identities=11%  Similarity=-0.109  Sum_probs=72.0

Q ss_pred             HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005594           83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV  159 (689)
Q Consensus        83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~  159 (689)
                      .++..+|..|.+.|+.++|++.|.++......   ..+.++.+..+....+++.....+..++-..-.. ...+.....+
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl  115 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence            57889999999999999999999998775433   2456778888888999999999998888665333 1113333333


Q ss_pred             HHHhHHHHHHcCChHHHHHHHHHHHh
Q 005594          160 LTDLGTSLKLAGNTQDGIQKYYEALK  185 (689)
Q Consensus       160 ~~~l~~~~~~~~~~~~A~~~~~~al~  185 (689)
                      -...|..+...++|.+|.+.|-.+..
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccCc
Confidence            44455555666777777776655543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>smart00028 TPR Tetratricopeptide repeats

Probab=94.66  E-value=0.062  Score=31.92  Aligned_cols=29  Identities=21%  Similarity=0.221  Sum_probs=12.6

Q ss_pred             HHhHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 005594           85 HIGKGICLQMQNMGRLAFDSFSEAVKLDP  113 (689)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p  113 (689)
                      +..+|.++...+++++|+..++++++.+|
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            33444444444444444444444444333

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=94.65  E-value=6.2  Score=40.67  Aligned_cols=81  Identities=12%  Similarity=-0.016  Sum_probs=63.2

Q ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594          171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER  250 (689)
Q Consensus       171 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  250 (689)
                      -++.-....+.+++... ++-.+++.++.+|.+. ..++-....++.++.+-++...-..++..|.+ ++.+++..+|.+
T Consensus        80 ~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~K  156 (711)
T COG1747          80 HKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGK  156 (711)
T ss_pred             hHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHH
Confidence            34444556667777654 4567888999999888 66777888999999888888888888888877 888999999999


Q ss_pred             HHhc
Q 005594          251 CLAV  254 (689)
Q Consensus       251 al~~  254 (689)
                      ++..
T Consensus       157 a~yr  160 (711)
T COG1747         157 ALYR  160 (711)
T ss_pred             HHHH
Confidence            8764

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.60  E-value=2.4  Score=44.64  Aligned_cols=99  Identities=20%  Similarity=0.130  Sum_probs=85.9

Q ss_pred             HHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005594          156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC  229 (689)
Q Consensus       156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  229 (689)
                      +-.++.+.+.-.++..+|..+++.|...+..-|.+      +.....++.||..+.+.+.|.++++.|-+.+|.++-...
T Consensus       353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~  432 (872)
T KOG4814|consen  353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL  432 (872)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence            33456677788888999999999999998876654      556788999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          230 NMGVIYKNRGDLESAIACYERCLAV  254 (689)
Q Consensus       230 ~la~~~~~~g~~~~A~~~~~~al~~  254 (689)
                      .+..+....+.-++|+.+..+....
T Consensus       433 ~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  433 LMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhh
Confidence            9999999999999999998887655

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=94.50  E-value=0.43  Score=54.49  Aligned_cols=137  Identities=16%  Similarity=0.068  Sum_probs=95.1

Q ss_pred             CchhhHHHHHHHHHhCCCHHHHHH------HHHHH-HHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHc-------
Q 005594           46 FEGKDALSYANILRSRNKFVDALA------LYEIV-LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL-------  111 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~------~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------  111 (689)
                      .+++...+.++.....|.+.+|.+      ++... -...|.....+..++..+...+++++|+..-.++.-+       
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence            456778889999999999998888      55532 2347788899999999999999999999988877643       


Q ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHh
Q 005594          112 -DPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK  185 (689)
Q Consensus       112 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~  185 (689)
                       .|+....+..++...+..++...|...+.++..+     .|..+..    +.+..+++.++...++++.|+++.+.+++
T Consensus      1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~----a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT----ALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred             CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch----hhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence             2445667778888888888888888877777653     2222221    22234444444455556666666655554


Q ss_pred             h
Q 005594          186 I  186 (689)
Q Consensus       186 ~  186 (689)
                      .
T Consensus      1086 ~ 1086 (1236)
T KOG1839|consen 1086 K 1086 (1236)
T ss_pred             H
Confidence            3

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.38  E-value=1  Score=37.29  Aligned_cols=73  Identities=12%  Similarity=0.149  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-cCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 005594          334 AEACNNLGVIYKDRD---NLDKAVECYQMALS-IKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN  406 (689)
Q Consensus       334 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  406 (689)
                      ....+++++++....   +..+.+.+++..++ -.|.. -+..+.|+..+++.++|++++.+.+..++..|++.++..
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            344555555555443   34455666666664 33322 345666666666777777777777777776666655543

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.36  E-value=3.4  Score=41.41  Aligned_cols=173  Identities=14%  Similarity=0.112  Sum_probs=112.6

Q ss_pred             HHHHHhCCCH-HHHHHHHHHHHHhCCCCHHHHHhHHHHHHH------------hCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 005594           55 ANILRSRNKF-VDALALYEIVLEKDSGNVEAHIGKGICLQM------------QNMGRLAFDSFSEAVKLDPQNACAHTH  121 (689)
Q Consensus        55 a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~  121 (689)
                      -......|.| .++++.=.+.++.+|+....|...-.++..            +.-.++-+.+...+++.+|++..+|+.
T Consensus        35 i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~h  114 (421)
T KOG0529|consen   35 IQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHH  114 (421)
T ss_pred             HHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHH
Confidence            3334445555 567778888888899877666654444322            224566677888888899999999999


Q ss_pred             HHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 005594          122 CGILYKDEGR--LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV  199 (689)
Q Consensus       122 la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  199 (689)
                      +..++.+.+.  +..-++..+++++.+|.+..++...-.+   .+..........+-+++..+++..++.+..+|.....
T Consensus       115 R~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV---~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~  191 (421)
T KOG0529|consen  115 RKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFV---VEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSL  191 (421)
T ss_pred             HHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHH---HHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHH
Confidence            9988887663  5778888899999998887776532211   1112222233566677788888888888888887766


Q ss_pred             HHHH------cCC------HHHHHHHHHHHHHhCCCCHHHHHH
Q 005594          200 VYSE------LMQ------YDTALGCYEKAALERPMYAEAYCN  230 (689)
Q Consensus       200 ~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~  230 (689)
                      ++..      .|+      ...-++....++-.+|++..+|+.
T Consensus       192 lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY  234 (421)
T KOG0529|consen  192 LLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY  234 (421)
T ss_pred             HHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence            6552      221      222334444555567777666655

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.28  E-value=0.67  Score=41.63  Aligned_cols=65  Identities=17%  Similarity=0.097  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594          191 APAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVS  255 (689)
Q Consensus       191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  255 (689)
                      ..++..+|..|.+.|+.++|++.|.++.+....   ..+.++.+..+....+++.....+..++-...
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            356677888888888888888888887665432   24566777777778888888888777776543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.97  E-value=6.1  Score=41.37  Aligned_cols=104  Identities=17%  Similarity=0.084  Sum_probs=74.2

Q ss_pred             hCCCHHHHHHHHHHHHHh------------CCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHc----------------
Q 005594           60 SRNKFVDALALYEIVLEK------------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL----------------  111 (689)
Q Consensus        60 ~~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------  111 (689)
                      ....|++|...|.-+...            .|-+.+.+..++.+...+|+.+-|....++++=.                
T Consensus       250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c  329 (665)
T KOG2422|consen  250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC  329 (665)
T ss_pred             cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence            345677888877776654            4667889999999999999999888888887631                


Q ss_pred             -----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHh
Q 005594          112 -----DPQNAC---AHTHCGILYKDEGRLVEAAESYHKALSADPS-YKPAAECLAIVLTDL  163 (689)
Q Consensus       112 -----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~l  163 (689)
                           .|.|-.   +++..-..+.+.|-+..|.++.+-.++++|. ++-....+...+...
T Consensus       330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr  390 (665)
T KOG2422|consen  330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR  390 (665)
T ss_pred             cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence                 223332   2333445566789999999999999999998 665544444434333

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.75  E-value=0.15  Score=32.85  Aligned_cols=29  Identities=38%  Similarity=0.554  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          403 EAYNNLGVLYRDAGSISLAIDAYEQCLKI  431 (689)
Q Consensus       403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  431 (689)
                      .++.++|.+|..+|++++|..++++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45677778888888888888887777764

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=93.62  E-value=17  Score=41.82  Aligned_cols=135  Identities=14%  Similarity=0.067  Sum_probs=88.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH---HHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 005594          123 GILYKDEGRLVEAAESYHKALSADPSYKPAAEC---LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV  199 (689)
Q Consensus       123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  199 (689)
                      -.++...+.|++|+..|++.....|...+.+..   .+..+...+........+.+|+..|++.- -.|.-+--|...|.
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  560 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL  560 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence            356777889999999999999999886655433   22223332222222235777888877643 35666777889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCc
Q 005594          200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-----GDLESAIACYERCLAVSPNF  258 (689)
Q Consensus       200 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~  258 (689)
                      +|..+|++++-++++.-+++..|..+..-...-.+-.++     .+...|....--++...|..
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (932)
T PRK13184        561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK  624 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999888765433332222221     12234444444555555543

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=93.56  E-value=7.4  Score=37.52  Aligned_cols=34  Identities=21%  Similarity=0.276  Sum_probs=20.6

Q ss_pred             CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhc
Q 005594          221 RPMYAEAYCNMGV-IYKNRGDLESAIACYERCLAV  254 (689)
Q Consensus       221 ~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~  254 (689)
                      .|...+.+...+. .|...++...|...+....+.
T Consensus       136 ~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~  170 (260)
T PF04190_consen  136 YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK  170 (260)
T ss_dssp             SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            4444555554443 466778888888877666654

; PDB: 3LKU_E 2WPV_G.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.37  E-value=4.6  Score=42.23  Aligned_cols=156  Identities=10%  Similarity=0.045  Sum_probs=97.8

Q ss_pred             cCChHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------
Q 005594          170 AGNTQDGIQKYYEALKI------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-----------------  220 (689)
Q Consensus       170 ~~~~~~A~~~~~~al~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------------  220 (689)
                      ...|++|...|.-+...            .|-+.+.+..++.+...+|+.+-|....++++=.                 
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            35577888877776654            5667889999999999999999988888887521                 


Q ss_pred             ----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 005594          221 ----RPMYA---EAYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA  292 (689)
Q Consensus       221 ----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  292 (689)
                          .|.+-   .+++..-..+.+.|-+..|.++.+-.++++|. ++.....+...|...+      .+|+=-++.++..
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALra------reYqwiI~~~~~~  404 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRA------REYQWIIELSNEP  404 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHH------HhHHHHHHHHHHH
Confidence                12222   23344455667889999999999999999998 7765555544444433      3444444444433


Q ss_pred             H-----hhCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCC
Q 005594          293 L-----YYNWHYADAMYNLGVAYGEMLK---FDMAIVFYELAFHFNPH  332 (689)
Q Consensus       293 l-----~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~  332 (689)
                      -     ...|+.+ .-..++..|.....   -..|...+.+|+...|.
T Consensus       405 e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  405 ENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             HhhccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence            2     1223221 22233444444333   44566666666666553

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.37  E-value=0.76  Score=34.08  Aligned_cols=62  Identities=15%  Similarity=-0.026  Sum_probs=43.8

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHh---HHHHHHHhCCHHHHHHHHHHHH
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIG---KGICLQMQNMGRLAFDSFSEAV  109 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~---la~~~~~~g~~~~A~~~~~~al  109 (689)
                      +...++.|..++.+.+.++|+..++++++..++..+.+..   +..++...|+|.+.+++..+-+
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778888888888888888888888887776654444   4455667777777776654443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.30  E-value=8.1  Score=38.86  Aligned_cols=162  Identities=13%  Similarity=0.126  Sum_probs=116.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH------------hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005594          281 DINQGVAYYKKALYYNWHYADAMYNLGVAYG------------EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD  348 (689)
Q Consensus       281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  348 (689)
                      ..+++++.-.+.+..+|+...+|...-.++.            +..-.++-+.+...+++.+|++..+|+....++.+.+
T Consensus        44 yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p  123 (421)
T KOG0529|consen   44 YDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNP  123 (421)
T ss_pred             cchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC
Confidence            3456677777777778877665544322221            2224566777888899999999999999999998776


Q ss_pred             --CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------cC
Q 005594          349 --NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG----KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD------AG  416 (689)
Q Consensus       349 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~g  416 (689)
                        ++..=++..+++++.+|.+..+|...=.+.....    ...+=+++..+++..++.+..+|.....++..      .|
T Consensus       124 ~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g  203 (421)
T KOG0529|consen  124 HSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADG  203 (421)
T ss_pred             CchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccC
Confidence              4688889999999999998887766555554432    35667888889999899998888888777662      23


Q ss_pred             C------HHHHHHHHHHHHhcCCCChhhHhhH
Q 005594          417 S------ISLAIDAYEQCLKIDPDSRNAGQNR  442 (689)
Q Consensus       417 ~------~~~A~~~~~~al~~~p~~~~~~~~~  442 (689)
                      +      ...-++.-..|+-.+|++..++...
T Consensus       204 ~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~  235 (421)
T KOG0529|consen  204 NFMPKELLQSELEMVHSAIFTDPEDQSCWFYH  235 (421)
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence            1      2334556667777899998887653

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.03  E-value=0.25  Score=31.75  Aligned_cols=29  Identities=38%  Similarity=0.657  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005594          369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAA  397 (689)
Q Consensus       369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  397 (689)
                      .++.++|.+|..+|++++|+.++++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45677777777777777777777777665

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=92.65  E-value=10  Score=36.70  Aligned_cols=145  Identities=12%  Similarity=0.015  Sum_probs=86.9

Q ss_pred             HhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHH
Q 005594           86 IGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT  165 (689)
Q Consensus        86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~  165 (689)
                      +.+-....+..+..+-++....+++++|....++..++.--  ..-..+|.+.++++++.....           ++...
T Consensus       188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~-----------yr~sq  254 (556)
T KOG3807|consen  188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETI-----------YRQSQ  254 (556)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHH-----------HhhHH
Confidence            34445556667778888888899999999998888877543  334678888888888754321           11111


Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH
Q 005594          166 SLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYKNRGDLE  242 (689)
Q Consensus       166 ~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~  242 (689)
                      .....|...+|.      .+.+.+ ...+...++.|..++|+..+|++.++...+..|-.  ..++-++-..+....-|.
T Consensus       255 q~qh~~~~~da~------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYA  328 (556)
T KOG3807|consen  255 QCQHQSPQHEAQ------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYA  328 (556)
T ss_pred             HHhhhccchhhh------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            111222222221      111111 12334578899999999999999999988877632  233444555555554444


Q ss_pred             HHHHHHH
Q 005594          243 SAIACYE  249 (689)
Q Consensus       243 ~A~~~~~  249 (689)
                      +....+-
T Consensus       329 DvqavLa  335 (556)
T KOG3807|consen  329 DVQAVLA  335 (556)
T ss_pred             HHHHHHH
Confidence            4444333

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.65  E-value=0.32  Score=46.15  Aligned_cols=79  Identities=13%  Similarity=0.035  Sum_probs=63.0

Q ss_pred             ccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHh-HHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 005594           44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIG-KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC  122 (689)
Q Consensus        44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  122 (689)
                      ...++..|...+....+.|-|.+--.+|.++++.+|.+++.|.. .+.-+...++.+.+...|.++++.+|+++..|...
T Consensus       103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey  182 (435)
T COG5191         103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY  182 (435)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence            34567778888888888888888888888888888888888877 55557777888888888888888888888777544

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=92.58  E-value=11  Score=36.64  Aligned_cols=59  Identities=12%  Similarity=-0.138  Sum_probs=45.0

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHc
Q 005594           51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL  111 (689)
Q Consensus        51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  111 (689)
                      -.+.-+...+..+..+-++....+++++|+-+.++..++.--  ..-..+|.+.|+++++.
T Consensus       187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka  245 (556)
T KOG3807|consen  187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKA  245 (556)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence            344555566777888889999999999999999999887653  33466788888888764

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.41  E-value=0.25  Score=46.84  Aligned_cols=86  Identities=6%  Similarity=-0.020  Sum_probs=52.8

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 005594          323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN-LGVVYTVQGKMDAAAEMIEKAIAANPTY  401 (689)
Q Consensus       323 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~  401 (689)
                      |.++....++++..|...+....+.|.+.+--..|.++++.+|.+.+.|.. .+.-+...++.+.+...+.+++.++|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            334444456666666666666666666666666666666666666666654 3334555666666666666666666666


Q ss_pred             HHHHHHH
Q 005594          402 AEAYNNL  408 (689)
Q Consensus       402 ~~~~~~l  408 (689)
                      +..|...
T Consensus       176 p~iw~ey  182 (435)
T COG5191         176 PRIWIEY  182 (435)
T ss_pred             chHHHHH
Confidence            6655443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.88  E-value=4.2  Score=39.15  Aligned_cols=64  Identities=17%  Similarity=0.171  Sum_probs=52.5

Q ss_pred             HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594           82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA  145 (689)
Q Consensus        82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  145 (689)
                      ..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4566777888888888888888888888888888888888888888888888888888877653

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=91.82  E-value=24  Score=38.99  Aligned_cols=380  Identities=13%  Similarity=0.010  Sum_probs=207.0

Q ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH---HhCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005594           47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQ---MQNMGRLAFDSFSEAVKLDPQNACAHTHCG  123 (689)
Q Consensus        47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la  123 (689)
                      +....+.+-..+...|++++-...-.++.+..|..+..|..-..-..   ..++-.++...|++++.- -+++..|...+
T Consensus       112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d-y~~v~iw~e~~  190 (881)
T KOG0128|consen  112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD-YNSVPIWEEVV  190 (881)
T ss_pred             chHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc-cccchHHHHHH
Confidence            34455667778888898888777777777778888777766554433   336778888999999863 34444554444


Q ss_pred             HHH-------HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHH---
Q 005594          124 ILY-------KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA---  193 (689)
Q Consensus       124 ~~~-------~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---  193 (689)
                      ...       ...++++.-...|.+++..-.....--..+..++...-..+...-..++-+.++...+... .+.++   
T Consensus       191 ~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~  269 (881)
T KOG0128|consen  191 NYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGW  269 (881)
T ss_pred             HHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHH
Confidence            433       4456788888899999875443332222334445556666666666677777777777654 22111   


Q ss_pred             -HHHHH---HHHHHcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 005594          194 -YYNLG---VVYSELMQYDTALGCYEKA-------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK  262 (689)
Q Consensus       194 -~~~la---~~~~~~g~~~~A~~~~~~a-------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  262 (689)
                       +....   .......+++.|.+-+.+.       +...+.....|..+.......|+.-.-...+++++...+.+...|
T Consensus       270 ~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~w  349 (881)
T KOG0128|consen  270 DLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALW  349 (881)
T ss_pred             HHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHH
Confidence             11111   1112334455555443333       333444445566666666677777777777777776666555544


Q ss_pred             hhHHHHHHH---hhh----hhh-hcCCHHHHHHHHHHHH---hhCCCC-----------HH---HHHHHHHHH-HhcC--
Q 005594          263 NNMAIALTD---LGT----KVK-LEGDINQGVAYYKKAL---YYNWHY-----------AD---AMYNLGVAY-GEML--  314 (689)
Q Consensus       263 ~~~~~~~~~---l~~----~~~-~~~~~~~A~~~~~~al---~~~~~~-----------~~---~~~~la~~~-~~~g--  314 (689)
                      ...+..+..   +..    .+. ..+...-...++++++   +.+...           ..   .+.+....+ ...+  
T Consensus       350 i~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~  429 (881)
T KOG0128|consen  350 IGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNI  429 (881)
T ss_pred             hhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            443322110   000    000 0011111111111111   111000           00   011111111 1111  


Q ss_pred             ----C-------HHHHHHHHHHHHhh-CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHH
Q 005594          315 ----K-------FDMAIVFYELAFHF-NPHCAEACNNLGVIYK-DRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTV  380 (689)
Q Consensus       315 ----~-------~~~A~~~~~~al~~-~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~  380 (689)
                          +       |..|...+...... -......+...|.+.. .+++.+.+..+....+........ .|.....+-..
T Consensus       430 ~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~  509 (881)
T KOG0128|consen  430 IDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLERE  509 (881)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHH
Confidence                2       33344444333332 1122344555555544 456788888888877776555544 78888888888


Q ss_pred             cCCHHHHHHHHHHHHHh--CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          381 QGKMDAAAEMIEKAIAA--NPTY-AEAYNNLGVLYRDAGSISLAIDAYEQC  428 (689)
Q Consensus       381 ~g~~~~A~~~~~~al~~--~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a  428 (689)
                      .|+...+..++++++..  +|++ ..++..+-......|.++.....-.+.
T Consensus       510 ~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~  560 (881)
T KOG0128|consen  510 YGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEKV  560 (881)
T ss_pred             hCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHhh
Confidence            89999999988888765  3432 345555666666777777766555443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.82  E-value=9.2  Score=40.05  Aligned_cols=164  Identities=15%  Similarity=0.037  Sum_probs=93.1

Q ss_pred             hHHHHHHHHHhCCCHHHHHHHHH--HHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594           50 DALSYANILRSRNKFVDALALYE--IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK  127 (689)
Q Consensus        50 ~~~~~a~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  127 (689)
                      .-.-.-+....+|+++++.++.+  +.+..-|  ..-....+..+.++|.++.|+...+        ++...+   .+..
T Consensus       263 ~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rF---eLAl  329 (443)
T PF04053_consen  263 LSELEFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT--------DPDHRF---ELAL  329 (443)
T ss_dssp             HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHH---HHHH
T ss_pred             HHHHHHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHh---HHHH
Confidence            33445556678899999888775  2222222  3445666777778888888776542        344433   3456


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 005594          128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY  207 (689)
Q Consensus       128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  207 (689)
                      +.|+++.|.+..++.     ++..       .|..+|.....+|+++-|.++|+++-        -+..|..+|...|+.
T Consensus       330 ~lg~L~~A~~~a~~~-----~~~~-------~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~  389 (443)
T PF04053_consen  330 QLGNLDIALEIAKEL-----DDPE-------KWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDR  389 (443)
T ss_dssp             HCT-HHHHHHHCCCC-----STHH-------HHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-H
T ss_pred             hcCCHHHHHHHHHhc-----CcHH-------HHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCH
Confidence            788888887765432     2233       38888888889999999999888753        244566677778887


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC  251 (689)
Q Consensus       208 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  251 (689)
                      +.-.+..+.+......     ...-.++...|+.++.++.+.+.
T Consensus       390 ~~L~kl~~~a~~~~~~-----n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  390 EKLSKLAKIAEERGDI-----NIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHHHHHHHHHHTT-H-----HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccCH-----HHHHHHHHHcCCHHHHHHHHHHc
Confidence            6666666555443321     12223445557777766666553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.50  E-value=28  Score=39.47  Aligned_cols=113  Identities=10%  Similarity=-0.010  Sum_probs=66.4

Q ss_pred             HHHHhHHHHHHcCChHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHH------
Q 005594          159 VLTDLGTSLKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQY--DTALGCYEKAALERPMYAE------  226 (689)
Q Consensus       159 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~------  226 (689)
                      -+..|+..|...|+.++|++.+.+.....    +.....+-..-..+...+.-  +-..++..-.++.+|....      
T Consensus       506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~  585 (877)
T KOG2063|consen  506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE  585 (877)
T ss_pred             cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence            36678888999999999999999888733    33344444444445555544  5555555555555553211      


Q ss_pred             -------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHhhHHHHHHH
Q 005594          227 -------AYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTD  271 (689)
Q Consensus       227 -------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~  271 (689)
                             .-.....-+......+-++.+++.++..... ....+..+...|..
T Consensus       586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e  638 (877)
T KOG2063|consen  586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE  638 (877)
T ss_pred             ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence                   0011122345667778888888888877655 33333444444433

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.42  E-value=5.4  Score=36.07  Aligned_cols=73  Identities=15%  Similarity=0.197  Sum_probs=56.9

Q ss_pred             ChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 005594          172 NTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM----YAEAYCNMGVIYKNRGDLESAI  245 (689)
Q Consensus       172 ~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~  245 (689)
                      .-++|...|.++-.. .-++++..+.+|..|. ..+.++++..+.++++..+.    +++.+..|+.++..+|+++.|-
T Consensus       121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            446777777665433 2246888888888776 67899999999999987543    5899999999999999998874

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=91.41  E-value=14  Score=35.61  Aligned_cols=65  Identities=18%  Similarity=0.004  Sum_probs=35.2

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHH----------------HhhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHH
Q 005594          298 HYADAMYNLGVAYGEMLKFDMAIVFYELA----------------FHFNPHCAEACNNLGV-IYKDRDNLDKAVECYQMA  360 (689)
Q Consensus       298 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------------l~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~a  360 (689)
                      .+++.+..+|..+.+.|++.+|..+|-..                .+-.|.....+...+. .|...++...|...+...
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f  167 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF  167 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            36778888888888888888887766321                1113444444444333 344556666666555444


Q ss_pred             Hh
Q 005594          361 LS  362 (689)
Q Consensus       361 l~  362 (689)
                      ++
T Consensus       168 ~~  169 (260)
T PF04190_consen  168 TS  169 (260)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

; PDB: 3LKU_E 2WPV_G.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=91.18  E-value=6.5  Score=40.36  Aligned_cols=64  Identities=19%  Similarity=0.121  Sum_probs=48.2

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH--HHHhH--HHHHHHhCCHHHHHHHHHHHHHc
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVE--AHIGK--GICLQMQNMGRLAFDSFSEAVKL  111 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~al~~  111 (689)
                      +...+..+..++..++|..|.++++.+...-|.+..  .+..+  |.-+....++++|.+.+++.+..
T Consensus       131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            345677899999999999999999999886344333  44444  34456778899999999988765

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=91.17  E-value=2.1  Score=40.55  Aligned_cols=68  Identities=22%  Similarity=0.214  Sum_probs=46.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 005594          195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK  262 (689)
Q Consensus       195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  262 (689)
                      .++=..+...++++.|..+.++.+..+|.++.-+.-.|.+|.++|.+.-|++.++..++..|+.+.+.
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence            34445566667777777777777777777777777777777777777777777777777777665443

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.96  E-value=0.84  Score=28.29  Aligned_cols=31  Identities=19%  Similarity=0.164  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH--HHHHHhcCCC
Q 005594          404 AYNNLGVLYRDAGSISLAIDA--YEQCLKIDPD  434 (689)
Q Consensus       404 ~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~  434 (689)
                      .++.+|..+..+|++++|++.  |+-+..++|.
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            455566666666666666666  3355555554

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=90.84  E-value=15  Score=34.83  Aligned_cols=63  Identities=10%  Similarity=0.169  Sum_probs=43.6

Q ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHH-HhCCHHHHHHHHHHHHHc
Q 005594           49 KDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQ-MQNMGRLAFDSFSEAVKL  111 (689)
Q Consensus        49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~  111 (689)
                      +.++.+|+...+.|+|++.+..+++++..++. +.+-...++.+|- ..|....+...+......
T Consensus         2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~   66 (236)
T PF00244_consen    2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK   66 (236)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence            45788899999999999999999999998775 4455666666653 234555555555554443

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.80  E-value=2.6  Score=33.22  Aligned_cols=61  Identities=20%  Similarity=0.279  Sum_probs=37.3

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh
Q 005594          126 YKDEGRLVEAAESYHKALSADPSYKPAA--ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI  186 (689)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~  186 (689)
                      ..+.|++.+|++.+.+.+..........  ..+...+..++.+....|++++|+..+++++++
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3567788888777777766543322211  123334556666677777777777777777665

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=90.70  E-value=2.7  Score=41.99  Aligned_cols=91  Identities=20%  Similarity=0.174  Sum_probs=73.5

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhC--------CC-----CH-----HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 005594           52 LSYANILRSRNKFVDALALYEIVLEKD--------SG-----NV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDP  113 (689)
Q Consensus        52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~--------p~-----~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  113 (689)
                      +.-|...+++++|..|.--|..+|+..        |.     +.     .+--.+..||+.+++.+-|+....+.+.++|
T Consensus       180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP  259 (569)
T PF15015_consen  180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP  259 (569)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence            445667888888888888888888752        11     11     2344688999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          114 QNACAHTHCGILYKDEGRLVEAAESYHKA  142 (689)
Q Consensus       114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a  142 (689)
                      ....-+...|.++..+.+|.+|...+--+
T Consensus       260 ~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  260 SYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987765543

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.53  E-value=1.2  Score=42.27  Aligned_cols=68  Identities=21%  Similarity=0.304  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005594          371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA  438 (689)
Q Consensus       371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  438 (689)
                      ..++-..+...++++.|..+.++.+.++|+++.-+.-.|.+|.++|-+.-|++.++..++..|+++.+
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a  251 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA  251 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence            34445556667777777777777777777777777777777777777777777777777777776654

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=90.00  E-value=3.6  Score=41.19  Aligned_cols=96  Identities=16%  Similarity=0.143  Sum_probs=66.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCC-----------CCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 005594          122 CGILYKDEGRLVEAAESYHKALSADP-----------SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY  190 (689)
Q Consensus       122 la~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  190 (689)
                      -|...+++++|..|..-|..++++..           ...+....-..+-..+..||...++.+-|+....+.+.++|..
T Consensus       182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~  261 (569)
T PF15015_consen  182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY  261 (569)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence            34566777777777777777776522           2222222333445667788888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          191 APAYYNLGVVYSELMQYDTALGCYEKA  217 (689)
Q Consensus       191 ~~~~~~la~~~~~~g~~~~A~~~~~~a  217 (689)
                      ..-+...|.++..+.+|.+|.+.+--+
T Consensus       262 frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  262 FRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888877655443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.95  E-value=19  Score=37.70  Aligned_cols=99  Identities=19%  Similarity=0.151  Sum_probs=47.6

Q ss_pred             cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005594          279 EGDINQGVAYYKKALYYNWHY-ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY  357 (689)
Q Consensus       279 ~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  357 (689)
                      .++++++....+.. ++-|.- ......++..+.+.|..+.|+..-+        ++...+.|+   .+.|+.+.|.+..
T Consensus       274 ~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLA---l~lg~L~~A~~~a  341 (443)
T PF04053_consen  274 RGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFELA---LQLGNLDIALEIA  341 (443)
T ss_dssp             TT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHH---HHCT-HHHHHHHC
T ss_pred             cCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHH---HhcCCHHHHHHHH
Confidence            45666655554311 111211 2335556666667777766665432        233333333   4556666665533


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA  394 (689)
Q Consensus       358 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  394 (689)
                      +     ..+++..|..||.....+|+++-|.++|+++
T Consensus       342 ~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  342 K-----ELDDPEKWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             C-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             H-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            2     2235566677777777777777776666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=89.79  E-value=1.7  Score=41.68  Aligned_cols=64  Identities=33%  Similarity=0.364  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI  431 (689)
Q Consensus       368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  431 (689)
                      ..++..++..+...|+++.++..+++.+..+|-+..+|..+-..|...|+...|+..|++.-+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4466778888888889999999999999999998899999999999999999999998888765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.77  E-value=15  Score=40.44  Aligned_cols=114  Identities=11%  Similarity=0.020  Sum_probs=70.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005594          124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE  203 (689)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  203 (689)
                      .++.+...|+-|+...+.-    ..+.+   .++.+....|..++..|++++|...|-+.+..-.. +.+    ..-+..
T Consensus       342 ~iL~kK~ly~~Ai~LAk~~----~~d~d---~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-s~V----i~kfLd  409 (933)
T KOG2114|consen  342 DILFKKNLYKVAINLAKSQ----HLDED---TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-SEV----IKKFLD  409 (933)
T ss_pred             HHHHHhhhHHHHHHHHHhc----CCCHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-HHH----HHHhcC
Confidence            4455666677776655431    11122   24666888899999999999999999888765221 111    112233


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594          204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE  249 (689)
Q Consensus       204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  249 (689)
                      ..+..+-..+++...+..-.+.+--..|-.+|.++++.++-.+..+
T Consensus       410 aq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~  455 (933)
T KOG2114|consen  410 AQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFIS  455 (933)
T ss_pred             HHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHh
Confidence            4445555566666666655555666677788888888776555443

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=89.75  E-value=28  Score=36.23  Aligned_cols=203  Identities=13%  Similarity=0.046  Sum_probs=123.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q 005594          113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP  192 (689)
Q Consensus       113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~  192 (689)
                      |-+-..+..+-.++.......-....+.+++....+ ..+       +..++.+|... ..++-...+++..+.+-++..
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~-kma-------l~el~q~y~en-~n~~l~~lWer~ve~dfnDvv  133 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGES-KMA-------LLELLQCYKEN-GNEQLYSLWERLVEYDFNDVV  133 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcch-HHH-------HHHHHHHHHhc-CchhhHHHHHHHHHhcchhHH
Confidence            334444555555555555566666777777776554 222       67777888777 667778888888888888888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C--CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 005594          193 AYYNLGVVYSELMQYDTALGCYEKAALER-P--MY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA  266 (689)
Q Consensus       193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p--~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  266 (689)
                      .-..|+..|.+ ++.+++..+|.+++... |  .+   .+.|..+-.  .--.+.+.-+....+.-......     ...
T Consensus       134 ~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~-----~~~  205 (711)
T COG1747         134 IGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEG-----RGS  205 (711)
T ss_pred             HHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccc-----hHH
Confidence            77888887776 88899999999987542 1  11   122222211  11222333333332222211110     111


Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHH
Q 005594          267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE--------------------MLKFDMAIVFYELA  326 (689)
Q Consensus       267 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~~a  326 (689)
                      .++..+-..|....++.+|++.+...++.+..+..+..++...+..                    -.++.+++.-|++.
T Consensus       206 Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~  285 (711)
T COG1747         206 VLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKL  285 (711)
T ss_pred             HHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHH
Confidence            2233334556667899999999999999888877666665555444                    44567777777777


Q ss_pred             HhhCCC
Q 005594          327 FHFNPH  332 (689)
Q Consensus       327 l~~~p~  332 (689)
                      +..+..
T Consensus       286 m~f~eG  291 (711)
T COG1747         286 MHFDEG  291 (711)
T ss_pred             heeccC
Confidence            666443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.33  E-value=0.52  Score=26.67  Aligned_cols=22  Identities=18%  Similarity=-0.053  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Q 005594          404 AYNNLGVLYRDAGSISLAIDAY  425 (689)
Q Consensus       404 ~~~~la~~~~~~g~~~~A~~~~  425 (689)
                      +...+|.++..+|+.++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            3444555555555555555444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=89.21  E-value=40  Score=37.32  Aligned_cols=28  Identities=11%  Similarity=0.097  Sum_probs=22.4

Q ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHH
Q 005594           46 FEGKDALSYANILRSRNKFVDALALYEI   73 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~   73 (689)
                      .+....+.....+++.|.+++|.++..+
T Consensus       109 ~~~~p~Wa~Iyy~LR~G~~~~A~~~~~~  136 (613)
T PF04097_consen  109 VNGDPIWALIYYCLRCGDYDEALEVANE  136 (613)
T ss_dssp             ETTEEHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHhcCCHHHHHHHHHH
Confidence            3566688889999999999999999843

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.88  E-value=0.63  Score=26.31  Aligned_cols=23  Identities=22%  Similarity=0.261  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 005594          370 SLNNLGVVYTVQGKMDAAAEMIE  392 (689)
Q Consensus       370 ~~~~la~~~~~~g~~~~A~~~~~  392 (689)
                      +...+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            34455555555555555555443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=88.87  E-value=5.8  Score=35.89  Aligned_cols=71  Identities=13%  Similarity=0.195  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHH
Q 005594          351 DKAVECYQMALSI-KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT----YAEAYNNLGVLYRDAGSISLAI  422 (689)
Q Consensus       351 ~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~  422 (689)
                      ++|...|-++-.. .-++++..+.+|..|. ..+.++|+..+.+++++.+.    +++++..|+.++..+|+++.|.
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            4455444433221 1134555666665554 44566666666666665332    3666666666666666666653

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=88.79  E-value=3.7  Score=30.58  Aligned_cols=61  Identities=20%  Similarity=0.152  Sum_probs=46.9

Q ss_pred             HHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHh
Q 005594           84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG---ILYKDEGRLVEAAESYHKALS  144 (689)
Q Consensus        84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la---~~~~~~g~~~~A~~~~~~al~  144 (689)
                      -....|.-++..++.++|+..++++++..++.+.-+..+|   .+|...|++.+.+++..+-+.
T Consensus         8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666677889999999999999999888776555554   677889999988887655444

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.40  E-value=0.81  Score=28.72  Aligned_cols=29  Identities=31%  Similarity=0.583  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594          403 EAYNNLGVLYRDAGSISLAIDAYEQCLKI  431 (689)
Q Consensus       403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  431 (689)
                      +++..||.+-...++|++|++-|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            35667777777777777777777777765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.29  E-value=1.7  Score=26.99  Aligned_cols=17  Identities=6%  Similarity=-0.201  Sum_probs=6.0

Q ss_pred             HHHHHHHhCCHHHHHHH
Q 005594           88 KGICLQMQNMGRLAFDS  104 (689)
Q Consensus        88 la~~~~~~g~~~~A~~~  104 (689)
                      +|..+..+|++++|+..
T Consensus         7 ~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    7 LAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHH
Confidence            33333333333333333

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=88.06  E-value=32  Score=34.71  Aligned_cols=141  Identities=13%  Similarity=0.049  Sum_probs=98.5

Q ss_pred             chhhHHHH--HHHHHhCCCHHHHHHHHHHHHHhCC-C--------CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcC---
Q 005594           47 EGKDALSY--ANILRSRNKFVDALALYEIVLEKDS-G--------NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD---  112 (689)
Q Consensus        47 ~~~~~~~~--a~~~~~~g~~~~A~~~~~~~l~~~p-~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---  112 (689)
                      +.+.++.+  ...+..++++.+|..+-+..+..-. .        .+..|+.+..++...|+...-...+...+...   
T Consensus       123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr  202 (493)
T KOG2581|consen  123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR  202 (493)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence            34444443  3344567899999998887765311 1        24577888888888888777666666555431   


Q ss_pred             --CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005594          113 --PQ-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH  189 (689)
Q Consensus       113 --p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  189 (689)
                        .. .......+-..|...+.|+.|.....+..  .|+.... ...+..++.+|.+..-+++|..|.+++-+++...|.
T Consensus       203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~sn-ne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASN-NEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ  279 (493)
T ss_pred             CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--Ccccccc-HHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence              11 23345556678888999999998887764  3433222 245777888999999999999999999999999997


Q ss_pred             C
Q 005594          190 Y  190 (689)
Q Consensus       190 ~  190 (689)
                      +
T Consensus       280 ~  280 (493)
T KOG2581|consen  280 H  280 (493)
T ss_pred             h
Confidence            4

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=87.98  E-value=2.3  Score=33.51  Aligned_cols=23  Identities=17%  Similarity=0.281  Sum_probs=16.7

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCC
Q 005594          235 YKNRGDLESAIACYERCLAVSPN  257 (689)
Q Consensus       235 ~~~~g~~~~A~~~~~~al~~~~~  257 (689)
                      ..+.|++.+|++.+.+.++....
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~   30 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQ   30 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhh
Confidence            45678888888888887765443

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=87.89  E-value=29  Score=34.05  Aligned_cols=158  Identities=12%  Similarity=0.072  Sum_probs=107.8

Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC--------------------------CHHHHHHHHHHHHhhC-CC
Q 005594          280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML--------------------------KFDMAIVFYELAFHFN-PH  332 (689)
Q Consensus       280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--------------------------~~~~A~~~~~~al~~~-p~  332 (689)
                      +--++|+.+-+-...+.|..++++-.++.+.++..                          -.+++...+.+++... |.
T Consensus       210 ~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pG  289 (415)
T COG4941         210 DLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPG  289 (415)
T ss_pred             hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence            34578888888888889999988877777665432                          1467777777777654 33


Q ss_pred             CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHH
Q 005594          333 CAEACNNLGVIYKD-----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAY  405 (689)
Q Consensus       333 ~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~  405 (689)
                      -....-.++.++..     .-++..-..+|.-...+.|+ +.+-.|.+....+..-...++...+.....  -..+.-.+
T Consensus       290 PYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h  368 (415)
T COG4941         290 PYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYH  368 (415)
T ss_pred             hHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccH
Confidence            33333344444433     23566666677666666654 455556666666666677777777665544  22344567


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005594          406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA  438 (689)
Q Consensus       406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  438 (689)
                      ...|..+.++|+.++|...|++++.+.++..+.
T Consensus       369 ~~RadlL~rLgr~~eAr~aydrAi~La~~~aer  401 (415)
T COG4941         369 AARADLLARLGRVEEARAAYDRAIALARNAAER  401 (415)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence            778999999999999999999999999886654

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=87.37  E-value=2  Score=36.65  Aligned_cols=51  Identities=20%  Similarity=0.120  Sum_probs=40.7

Q ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCC
Q 005594           47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM   97 (689)
Q Consensus        47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~   97 (689)
                      ..+..+..|+..+..|+|.-|..+.+.++..+|++.++...++.++.++|.
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            467788888889999999999999999999999998888888888877664

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.16  E-value=1.1  Score=28.12  Aligned_cols=26  Identities=35%  Similarity=0.561  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594          337 CNNLGVIYKDRDNLDKAVECYQMALS  362 (689)
Q Consensus       337 ~~~la~~~~~~g~~~~A~~~~~~al~  362 (689)
                      +..+|.+-...++|++|+.-|+++++
T Consensus         4 ~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    4 YDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34444444444444444444444444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.08  E-value=36  Score=38.67  Aligned_cols=26  Identities=12%  Similarity=-0.042  Sum_probs=15.7

Q ss_pred             HHhHHHHHHHhCCHHHHHHHHHHHHH
Q 005594           85 HIGKGICLQMQNMGRLAFDSFSEAVK  110 (689)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~~al~  110 (689)
                      +..|+..|...|+.++|++.+.+...
T Consensus       507 y~~Li~LY~~kg~h~~AL~ll~~l~d  532 (877)
T KOG2063|consen  507 YRELIELYATKGMHEKALQLLRDLVD  532 (877)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhc
Confidence            34455666666666666666666554

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=86.75  E-value=24  Score=38.99  Aligned_cols=22  Identities=27%  Similarity=0.369  Sum_probs=10.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC
Q 005594          378 YTVQGKMDAAAEMIEKAIAANPT  400 (689)
Q Consensus       378 ~~~~g~~~~A~~~~~~al~~~p~  400 (689)
                      ++..|++++|++.+++. .+-|.
T Consensus       515 ~~~~g~~~~AL~~i~~L-~liP~  536 (613)
T PF04097_consen  515 LYHAGQYEQALDIIEKL-DLIPL  536 (613)
T ss_dssp             HHHTT-HHHHHHHHHHT-T-S-S
T ss_pred             HHHcCCHHHHHHHHHhC-CCCCC
Confidence            34566777776666553 24443

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=85.81  E-value=49  Score=34.60  Aligned_cols=164  Identities=18%  Similarity=0.153  Sum_probs=87.0

Q ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhCCH-------HHHHHHHHHHHHc----
Q 005594           49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN------VEAHIGKGICLQMQNMG-------RLAFDSFSEAVKL----  111 (689)
Q Consensus        49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~----  111 (689)
                      .....+|..++-.|+|+-|...|+.+.+-.-++      +.+.-..|.+++..+..       ++...+++.++..    
T Consensus       209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~  288 (414)
T PF12739_consen  209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS  288 (414)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence            346678999999999999999999887643322      12334455555555532       2333444443321    


Q ss_pred             -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhHHHH--HHcCChHHHHHHH
Q 005594          112 -------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSA--DPSYKPAAECLAIVLTDLGTSL--KLAGNTQDGIQKY  180 (689)
Q Consensus       112 -------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~l~~~~--~~~~~~~~A~~~~  180 (689)
                             ......+....+.++...|.+.+|...+-+....  ..+...  ..-+.++...+.++  ........-...+
T Consensus       289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~--~~~alllE~~a~~~~~~~~~~~~~~~~r~  366 (414)
T PF12739_consen  289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRP--FGSALLLEQAAYCYASLRSNRPSPGLTRF  366 (414)
T ss_pred             hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhh--HhhHHHHHHHHHhhcccccCCCCccchhh
Confidence                   1122345566677788888888887777666554  222110  00233344444444  1110000000000


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005594          181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER  221 (689)
Q Consensus       181 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  221 (689)
                      +       +.+--+..-|.-|...|+...|+.+|.+++...
T Consensus       367 R-------K~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY  400 (414)
T PF12739_consen  367 R-------KYAFHMVLAGHRYSKAGQKKHALRCYKQALQVY  400 (414)
T ss_pred             H-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            0       012223334566777777777777777776653

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=85.73  E-value=78  Score=36.85  Aligned_cols=24  Identities=17%  Similarity=-0.166  Sum_probs=14.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHH
Q 005594          304 YNLGVAYGEMLKFDMAIVFYELAF  327 (689)
Q Consensus       304 ~~la~~~~~~g~~~~A~~~~~~al  327 (689)
                      ..|+..+..++++-+|-+.....+
T Consensus      1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred             HHHHHHHHHcccchhHHHHHHHHh
Confidence            455556666666666666555443

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=85.49  E-value=46  Score=34.75  Aligned_cols=54  Identities=17%  Similarity=-0.073  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCC
Q 005594          118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN  172 (689)
Q Consensus       118 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~  172 (689)
                      ....+|.+++..++|+-|...|+.+.+-.. +..++..++.+....|.+....+.
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~-~Dkaw~~~A~~~Em~alsl~~~~~  263 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFK-NDKAWKYLAGAQEMAALSLLMQGQ  263 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHh-hchhHHHHHhHHHHHHHHHHhcCC
Confidence            456789999999999999999998877443 345566666666666666665553

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=85.44  E-value=35  Score=32.64  Aligned_cols=27  Identities=0%  Similarity=0.070  Sum_probs=19.6

Q ss_pred             HHHhHHHHHHcCChHHHHHHHHHHHhh
Q 005594          160 LTDLGTSLKLAGNTQDGIQKYYEALKI  186 (689)
Q Consensus       160 ~~~l~~~~~~~~~~~~A~~~~~~al~~  186 (689)
                      -+.+..+++..|+..+|+..+++=+..
T Consensus        13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~   39 (247)
T PF11817_consen   13 AFKICRLYLWLNQPTEAVRQFRAHIDR   39 (247)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            455667777888888888888765544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=85.41  E-value=25  Score=33.29  Aligned_cols=28  Identities=14%  Similarity=0.197  Sum_probs=15.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005594          195 YNLGVVYSELMQYDTALGCYEKAALERP  222 (689)
Q Consensus       195 ~~la~~~~~~g~~~~A~~~~~~al~~~p  222 (689)
                      ..++.+..+.|+|++.+.++++++..++
T Consensus         5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~   32 (236)
T PF00244_consen    5 IYLAKLAEQAERYDDMVEYMKQLIEMNP   32 (236)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence            4455555555555555555555555544

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=84.94  E-value=84  Score=36.58  Aligned_cols=109  Identities=17%  Similarity=0.103  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH---HHHHHHH
Q 005594          302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL---NNLGVVY  378 (689)
Q Consensus       302 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~la~~~  378 (689)
                      .+...|..+...+.+++|.-.|+++=+.        -.--.+|...|++.+|+....+.   .+...+..   ..|+.-+
T Consensus       941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl--------ekAl~a~~~~~dWr~~l~~a~ql---~~~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen  941 IYEAYADHLREELMSDEAALMYERCGKL--------EKALKAYKECGDWREALSLAAQL---SEGKDELVILAEELVSRL 1009 (1265)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHhccH--------HHHHHHHHHhccHHHHHHHHHhh---cCCHHHHHHHHHHHHHHH
Confidence            3444455555555555555444443110        00111223335555555444332   23333333   5667777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594          379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC  428 (689)
Q Consensus       379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  428 (689)
                      ..++++-+|-+.....+.. |.  +    .-..|.+...|++|+.....+
T Consensus      1010 ~e~~kh~eAa~il~e~~sd-~~--~----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD-PE--E----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HHcccchhHHHHHHHHhcC-HH--H----HHHHHhhHhHHHHHHHHHHhc
Confidence            7888888887777665432 21  1    123344555667776655444

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=84.67  E-value=24  Score=30.09  Aligned_cols=47  Identities=9%  Similarity=0.018  Sum_probs=26.3

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594          202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE  249 (689)
Q Consensus       202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  249 (689)
                      ...+.....+.+++.++..++.++..+..+..+|.+.+ ..+.+..++
T Consensus        18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~   64 (140)
T smart00299       18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD   64 (140)
T ss_pred             HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence            34456666666666666665555666666666665432 333344433

>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown

Probab=84.61  E-value=1.9  Score=46.52  Aligned_cols=258  Identities=13%  Similarity=0.078  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH--HhcCCC-CHHHHHHH
Q 005594          301 DAMYNLGVAYGEMLKFDMAIVFYELAFH--FNPH-CAEACNNLGVIYKDRDNLDKAVECYQMA--LSIKPN-FSQSLNNL  374 (689)
Q Consensus       301 ~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a--l~~~p~-~~~~~~~l  374 (689)
                      .....-+..+...|++..|...+.+.-.  +.+. ........+.+....|++++|+..+...  ..+.+. ....+...
T Consensus        25 ~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~  104 (536)
T PF04348_consen   25 QLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLR  104 (536)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHH
Confidence            4556667788888888888888887662  2332 2455566778888888888888888641  111111 13355567


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhcc-CCC
Q 005594          375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN-EGH  453 (689)
Q Consensus       375 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~  453 (689)
                      +.++...|++-+|...+-..-.+-++......+.-.+...+......  .+++  ...+++......+-++..+-. ..+
T Consensus       105 A~a~~~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L~~l~~~--~L~~--~~~~~~~~l~GWl~La~i~~~~~~~  180 (536)
T PF04348_consen  105 AQAYEQQGDPLAAARERIALDPLLPDPQERQENQDQIWQALSQLPPE--QLQQ--LRRASEPDLQGWLELALIYRQYQQD  180 (536)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHcCCHH--HHHh--hhcCCCHHHHHHHHHHHHHHhccCC
Confidence            77888888887777665544433221111111111111111111111  1111  111122222111112222211 233


Q ss_pred             hHHHHHHHHHHHHHHhhhccc--ccc-CCC--CCCCCCCeEEEEe---cCCcccchHHHHHHhhcccc---CCCceEEEE
Q 005594          454 DDKLFEAHRDWGKRFMRLYSQ--YTS-WDN--TKDPERPLVIGYV---SPDYFTHSVSYFIEAPLVYH---DYQNYKVVV  522 (689)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~--~~~-~~~--~~~~~~~lriG~~---S~d~~~h~v~~~~~~~~~~~---d~~~fev~~  522 (689)
                      ..........|..++......  .|. ...  ...+..+-+|+.+   |+.|....- -...+++..+   ...+.+|.+
T Consensus       181 p~~l~~al~~Wq~~yP~HPA~~~lP~~l~~~~~~~~~~~~~IavLLPlsG~~a~~~~-aI~~G~~aA~~~~~~~~~~l~~  259 (536)
T PF04348_consen  181 PAQLKQALNQWQQRYPNHPAAQYLPAALQQLLALQPAPPQRIAVLLPLSGRLARAGQ-AIRDGFLAAYYADADSRPELRF  259 (536)
T ss_dssp             -----------------------------------------EEEEE--SSTTHHHHH-HHHHHHHHHH---TT--S-EEE
T ss_pred             HHHHHHHHHHHHHhCcCCcccccCCHHHHHHHhhccCCccCEEEEeCCCCchhHHHH-HHHHHHHHhhcccccCCCceEE
Confidence            445555566777765432110  010 000  0112233456655   776664322 2234555555   456788888


Q ss_pred             EeCCCCCChHhHHHHHHhhhcCCceEeCCCCCHHHHHHHHHhCCC
Q 005594          523 YSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKI  567 (689)
Q Consensus       523 y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~i  567 (689)
                      |.+...  ++...+++.+...++  .-|.++.-+++.+.+....+
T Consensus       260 ~Dt~~~--~~~~~~~~a~~~ga~--~ViGPL~k~~V~~l~~~~~~  300 (536)
T PF04348_consen  260 YDTNAD--SADALYQQAVADGAD--FVIGPLLKSNVEALAQLPQL  300 (536)
T ss_dssp             EETTTS---HHHHHHHHHHTT----EEE---SHHHHHHHHH-GG-
T ss_pred             ecCCCC--CHHHHHHHHHHcCCC--EEEcCCCHHHHHHHHhcCcc
Confidence            875432  333344443332222  23455665555555555544

; PDB: 3CKM_A.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=84.36  E-value=4.4  Score=38.59  Aligned_cols=59  Identities=22%  Similarity=0.311  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594          371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL  429 (689)
Q Consensus       371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  429 (689)
                      +...+..|...|.+.+|+++.++++.++|-+.+.+..+-.++..+|+--.|...|++.-
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            34456667777888888888888888888777778888888888888777777776553

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=84.06  E-value=30  Score=30.69  Aligned_cols=141  Identities=16%  Similarity=0.168  Sum_probs=77.5

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----C
Q 005594          279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYG-----EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-----D  348 (689)
Q Consensus       279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g  348 (689)
                      ++++++|...|+.--..+. .+...+.+|..+.     ..++...|++.+..+-.  .+.+.+...+|.++..-     +
T Consensus        48 ~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~  124 (248)
T KOG4014|consen   48 QKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA  124 (248)
T ss_pred             HHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC
Confidence            3566777766665443322 3344444444333     23457777777777665  34566666666666532     2


Q ss_pred             --CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHH
Q 005594          349 --NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--YAEAYNNLGVLYRDAGSISLAIDA  424 (689)
Q Consensus       349 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~  424 (689)
                        +.++|.+++.++-.+  ++..+.+.|...+..-.  ++       +....|.  .+.   ..+..+.-..+.+.|.++
T Consensus       125 dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p~---~~~~~~~~~kDMdka~qf  190 (248)
T KOG4014|consen  125 DPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGK--EK-------FKTNAPGEGKPL---DRAELGSLSKDMDKALQF  190 (248)
T ss_pred             CCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccc--hh-------hcccCCCCCCCc---chhhhhhhhHhHHHHHHH
Confidence              367788888887665  34555566655554321  11       1112331  111   122334445677888888


Q ss_pred             HHHHHhcCCCCh
Q 005594          425 YEQCLKIDPDSR  436 (689)
Q Consensus       425 ~~~al~~~p~~~  436 (689)
                      --+|.+++--..
T Consensus       191 a~kACel~~~~a  202 (248)
T KOG4014|consen  191 AIKACELDIPQA  202 (248)
T ss_pred             HHHHHhcCChHH
Confidence            888887754333

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.80  E-value=67  Score=34.56  Aligned_cols=97  Identities=18%  Similarity=0.174  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005594           50 DALSYANILRSRNKFVDALALYEIVLEKDSGN------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG  123 (689)
Q Consensus        50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  123 (689)
                      .+...|..+++..+|..++++|...+.--|.+      +.....++.||+.+.+.+.|.+++++|-+.+|.++-.....-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            45678889999999999999999999876654      356778899999999999999999999999999999988888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcC
Q 005594          124 ILYKDEGRLVEAAESYHKALSAD  146 (689)
Q Consensus       124 ~~~~~~g~~~~A~~~~~~al~~~  146 (689)
                      .+....|+-++|+.+..+.....
T Consensus       436 ~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  436 QSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHhcchHHHHHHHHHHHhhh
Confidence            99999999999999988876653

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=83.74  E-value=3.1  Score=27.19  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=15.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594          406 NNLGVLYRDAGSISLAIDAYEQCLK  430 (689)
Q Consensus       406 ~~la~~~~~~g~~~~A~~~~~~al~  430 (689)
                      +.||.+|..+|+.+.|.+.+++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4566666666666666666666663

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=83.60  E-value=53  Score=33.20  Aligned_cols=199  Identities=18%  Similarity=0.055  Sum_probs=121.7

Q ss_pred             HHhCCCHHHHHHHHHHHHHhCCC-----CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcC-----------C------C-
Q 005594           58 LRSRNKFVDALALYEIVLEKDSG-----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD-----------P------Q-  114 (689)
Q Consensus        58 ~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------p------~-  114 (689)
                      ....|-+.+--...-++++.-|.     +...++.+...++-.|.  ++...+.+.+-..           |      . 
T Consensus        40 ~i~kg~~tke~r~I~R~lr~l~~~r~kln~~vL~~~v~~~~~~~s--e~~~~~l~fv~~~~~~~~p~~~~s~~t~~a~~~  117 (493)
T KOG2581|consen   40 QIDKGVYTKEPRFILRALRLLPSTRRKLNGAVLYKLVSSLLSSGS--EAMDRLLRFVPAFDKNIKPLDTDSPNTQSALKR  117 (493)
T ss_pred             HHhccccccchHHHHHHHHhhhhhHhhhhHHHHHHHHHHHcCCch--HHHHHHHhhcccccccCCccccccccccccccc
Confidence            35566555555555666665553     34455555555544442  5555554443210           1      0 


Q ss_pred             -----CHHHHHHH-H-HHHHHcCCHHHHHHHHHHHHhc-CCCC-HHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHh
Q 005594          115 -----NACAHTHC-G-ILYKDEGRLVEAAESYHKALSA-DPSY-KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK  185 (689)
Q Consensus       115 -----~~~~~~~l-a-~~~~~~g~~~~A~~~~~~al~~-~p~~-~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~  185 (689)
                           ...++..+ + ..+..+.++++|.+.-+..+.. .-.+ ......-+.+|+-+...+...++...-...+...+.
T Consensus       118 k~~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lr  197 (493)
T KOG2581|consen  118 KPLPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLR  197 (493)
T ss_pred             CCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence                 12333332 2 3334568899998887766542 1111 222233456677778888888886666555554443


Q ss_pred             h-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594          186 I-----DP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS  255 (689)
Q Consensus       186 ~-----~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  255 (689)
                      .     +. ..+...+.+-..|...+.|+.|.....+..--    +...+...+.+|.+..-+++|..|.+++-+++...
T Consensus       198 tAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka  277 (493)
T KOG2581|consen  198 TATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA  277 (493)
T ss_pred             HhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence            3     22 22445566778888899999999888776411    11335678889999999999999999999999999


Q ss_pred             CCc
Q 005594          256 PNF  258 (689)
Q Consensus       256 ~~~  258 (689)
                      |++
T Consensus       278 pq~  280 (493)
T KOG2581|consen  278 PQH  280 (493)
T ss_pred             cch
Confidence            974

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=83.57  E-value=4.6  Score=39.56  Aligned_cols=62  Identities=23%  Similarity=0.314  Sum_probs=38.1

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005594          319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV  380 (689)
Q Consensus       319 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  380 (689)
                      |..+|.+|..+.|++...++.+|.++...|+.=.|+-+|-+++-.....+.+..++..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            45666666666666666677777666666666666666666665544445566666666655

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=83.35  E-value=3.7  Score=40.18  Aligned_cols=62  Identities=24%  Similarity=0.330  Sum_probs=52.9

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 005594          353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD  414 (689)
Q Consensus       353 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  414 (689)
                      |+.+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++....-.+.+..+|..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999987755558888999888888

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=83.34  E-value=32  Score=32.78  Aligned_cols=181  Identities=13%  Similarity=0.028  Sum_probs=110.0

Q ss_pred             hhHHHHHHHHHhCCCH-HHHHHHHHHHHHhCCCCHHHHHhHHHHHHH--------hCCHHHHHHHHHHHHHcCCCCHHHH
Q 005594           49 KDALSYANILRSRNKF-VDALALYEIVLEKDSGNVEAHIGKGICLQM--------QNMGRLAFDSFSEAVKLDPQNACAH  119 (689)
Q Consensus        49 ~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~  119 (689)
                      ..+....+...+.++| ..|++.-...+..+|.....+...-.+...        ..-.+.-++.+..+++-+|.+...|
T Consensus        32 ~~l~gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW  111 (328)
T COG5536          32 HPLMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIW  111 (328)
T ss_pred             chHHHHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhh
Confidence            3445556666666665 578888888888888776666655554433        1234556778888899999999988


Q ss_pred             HHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 005594          120 THCGILYKDE--GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL  197 (689)
Q Consensus       120 ~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  197 (689)
                      ...-.++...  .++..-....++.++.++.+...+...-.++.. +........+..-.++-..++..++.+..+|...
T Consensus       112 ~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~-ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r  190 (328)
T COG5536         112 HHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRT-IEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHR  190 (328)
T ss_pred             HHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeec-chhhccchhHHHHHHhHHHHHhhCCCChHHHHHH
Confidence            8887777664  567777888888898888876654322111111 2222223344444556666777788887777665


Q ss_pred             ---HHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHH
Q 005594          198 ---GVVYSELMQ------YDTALGCYEKAALERPMYAEAYCN  230 (689)
Q Consensus       198 ---a~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~  230 (689)
                         -......|+      +++-+++.-.++-.+|++..+|..
T Consensus       191 ~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y  232 (328)
T COG5536         191 YIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGY  232 (328)
T ss_pred             HHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhH
Confidence               222223333      233344444444455665555543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=83.12  E-value=5.3  Score=38.02  Aligned_cols=61  Identities=13%  Similarity=0.030  Sum_probs=50.9

Q ss_pred             HHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594           84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS  144 (689)
Q Consensus        84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  144 (689)
                      .+...+..|...|.+.+|+++.++++..+|-+...+..+-.++...|+--.+.+.|++.-+
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            4455677788889999999999999999999888999999999999998888887776644

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.31  E-value=19  Score=38.18  Aligned_cols=132  Identities=17%  Similarity=0.219  Sum_probs=73.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005594          309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA  388 (689)
Q Consensus       309 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  388 (689)
                      +..+.|+++.|.++..++     ++..-|..||.+....+++..|.+++.++....        .|-.++...|+-+.-.
T Consensus       646 lal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~--------~LlLl~t~~g~~~~l~  712 (794)
T KOG0276|consen  646 LALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLG--------SLLLLYTSSGNAEGLA  712 (794)
T ss_pred             hhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchh--------hhhhhhhhcCChhHHH
Confidence            445677888777665543     456778888888888888888888888875431        1222233333333222


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHHHHHHHHHHH
Q 005594          389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF  468 (689)
Q Consensus       389 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (689)
                      ..-..+-+....+     .--.+|...|+++++++.+.+.-++ |+      .-+++..|+.    .+.-+....|...+
T Consensus       713 ~la~~~~~~g~~N-----~AF~~~~l~g~~~~C~~lLi~t~r~-pe------Aal~ArtYlp----s~vs~iv~~wk~~l  776 (794)
T KOG0276|consen  713 VLASLAKKQGKNN-----LAFLAYFLSGDYEECLELLISTQRL-PE------AALFARTYLP----SQVSRIVELWKEDL  776 (794)
T ss_pred             HHHHHHHhhcccc-----hHHHHHHHcCCHHHHHHHHHhcCcC-cH------HHHHHhhhCh----HHHHHHHHHHHHHh
Confidence            2221111111111     1124677889999888877654322 22      2345666653    34444455666555


Q ss_pred             h
Q 005594          469 M  469 (689)
Q Consensus       469 ~  469 (689)
                      .
T Consensus       777 ~  777 (794)
T KOG0276|consen  777 S  777 (794)
T ss_pred             h
Confidence            4

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.99  E-value=42  Score=30.87  Aligned_cols=62  Identities=18%  Similarity=0.095  Sum_probs=56.2

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH
Q 005594           55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA  116 (689)
Q Consensus        55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  116 (689)
                      ...+++.+..++|+...+.-++.+|.+......+-..+.-.|+|++|...++-+-++.|+..
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            45678889999999999999999999999999999999999999999999999999988753

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=81.42  E-value=38  Score=30.05  Aligned_cols=64  Identities=16%  Similarity=0.189  Sum_probs=29.5

Q ss_pred             CCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHh
Q 005594          189 HYAPAYYNLGVVYSE-LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-----RGDLESAIACYERCLA  253 (689)
Q Consensus       189 ~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~  253 (689)
                      ..++....||..+.- +.++++|.+.|+.--..+ ..+...+.+|..+..     .++...|++.++.+-.
T Consensus        32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~  101 (248)
T KOG4014|consen   32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD  101 (248)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc
Confidence            345555555554432 345555555555433322 223444444443322     2345555555555544

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=80.91  E-value=2.6  Score=41.27  Aligned_cols=70  Identities=14%  Similarity=0.104  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhH
Q 005594          370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG  439 (689)
Q Consensus       370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  439 (689)
                      ...+++.+-.+.+.+..|+..-..++..++....+++..+..+....++++|++.++.+....|++....
T Consensus       277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~  346 (372)
T KOG0546|consen  277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIE  346 (372)
T ss_pred             cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHH
Confidence            3344555555566666665555555555555556666666666666666666666666666666655443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.27  E-value=34  Score=36.41  Aligned_cols=100  Identities=20%  Similarity=0.098  Sum_probs=51.1

Q ss_pred             HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005594           57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA  136 (689)
Q Consensus        57 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  136 (689)
                      .+.-.|+++.|...+-.+    |  .+.....+..+..+|-.++|++       +.++..    ..-.+..+.|+++.|.
T Consensus       595 t~vmrrd~~~a~~vLp~I----~--k~~rt~va~Fle~~g~~e~AL~-------~s~D~d----~rFelal~lgrl~iA~  657 (794)
T KOG0276|consen  595 TLVLRRDLEVADGVLPTI----P--KEIRTKVAHFLESQGMKEQALE-------LSTDPD----QRFELALKLGRLDIAF  657 (794)
T ss_pred             HHhhhccccccccccccC----c--hhhhhhHHhHhhhccchHhhhh-------cCCChh----hhhhhhhhcCcHHHHH
Confidence            445556666665543332    2  2234444555555555544443       322211    1123345666777666


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHh
Q 005594          137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK  185 (689)
Q Consensus       137 ~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~  185 (689)
                      +...++-     +..-       |..||......+++..|.+++.++..
T Consensus       658 ~la~e~~-----s~~K-------w~~Lg~~al~~~~l~lA~EC~~~a~d  694 (794)
T KOG0276|consen  658 DLAVEAN-----SEVK-------WRQLGDAALSAGELPLASECFLRARD  694 (794)
T ss_pred             HHHHhhc-----chHH-------HHHHHHHHhhcccchhHHHHHHhhcc
Confidence            6544431     1111       56666667777777777777766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	689
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		2e-32
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		2e-14
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		4e-28
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		8e-19
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-18
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-11
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		5e-16
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-13
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		6e-12
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		9e-15
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		8e-11
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		6e-13
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		6e-10
2vsn_A	568	Structure And Topological Arrangement Of An O-Glcna		1e-12
2vsy_A	568	Xanthomonas Campestris Putative Ogt (Xcc0866), Apos		2e-12
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-11
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		4e-10
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		3e-04
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		1e-08
3r9a_B	328	Human Alanine-Glyoxylate Aminotransferase In Comple		3e-08
3r9a_B	328	Human Alanine-Glyoxylate Aminotransferase In Comple		2e-06
4eqf_A	365	Trip8b-1a#206-567 Interacting With The Carboxy-Term		4e-08
2j9q_A	328	A Novel Conformation For The Tpr Domain Of Pex5p Le		8e-08
2j9q_A	328	A Novel Conformation For The Tpr Domain Of Pex5p Le		1e-06
2c0m_A	319	Apo Form Of The Tpr Domain Of The Pex5p Receptor Le		8e-08
2c0m_A	319	Apo Form Of The Tpr Domain Of The Pex5p Receptor Le		1e-06
2c0l_A	305	Tpr Domain Of Human Pex5p In Complex With Human Msc		1e-07
2c0l_A	305	Tpr Domain Of Human Pex5p In Complex With Human Msc		1e-06
1fch_A	368	Crystal Structure Of The Pts1 Complexed To The Tpr		1e-07
1fch_A	368	Crystal Structure Of The Pts1 Complexed To The Tpr		2e-06
3cv0_A	327	Structure Of Peroxisomal Targeting Signal 1 (Pts1)		2e-06
3cvq_A	327	Structure Of Peroxisomal Targeting Signal 1 (pts1)		2e-06
2q7f_A	243	Crystal Structure Of Yrrb: A Tpr Protein With An Un		3e-05
2q7f_A	243	Crystal Structure Of Yrrb: A Tpr Protein With An Un		4e-04
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		5e-05
2xpi_A	597	Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1		1e-04
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		4e-04
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		5e-04

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 168/353 (47%), Gaps = 15/353 (4%)
Query: 89  GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
            I  Q + + R A  S + A+K +P  A A+++ G +YK+ G+L EA E Y  AL   P 
Sbjct: 41  SIHFQCRRLDRSAHFS-TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99
Query: 149 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208
           +            +L  +L  AG+ +  +Q Y  AL+ +P       +LG +   L + +
Sbjct: 100 FIDG-------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE 152
Query: 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
            A  CY KA   +P +A A+ N+G ++  +G++  AI  +E+ + + PNF         A
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-------LDA 205
Query: 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328
             +LG  +K     ++ VA Y +AL  + ++A    NL   Y E    D+AI  Y  A  
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265
Query: 329 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXX 388
             PH  +A  NL    K++ ++ +A +CY  AL + P  + SLNNL  +   QG      
Sbjct: 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325
Query: 389 XXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
                     P +A A++NL  + +  G +  A+  Y++ ++I P   +A  N
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 378

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 2/198 (1%)
Query: 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324
           +A A ++LG   K  G + + + +Y+ AL     + D   NL  A       + A+  Y 
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 325 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXX 384
            A  +NP      ++LG + K    L++A  CY  A+  +PNF+ + +NLG V+  QG  
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 385 XXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444
                        +P + +AY NLG + ++A     A+ AY + L + P+      N  L
Sbjct: 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN--L 243
Query: 445 AMNYINEGHDDKLFEAHR 462
           A  Y  +G  D   + +R
Sbjct: 244 ACVYYEQGLIDLAIDTYR 261

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 175/415 (42%), Gaps = 79/415 (19%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
           A +L +L    + +G+I + V  Y+KAL     +A A  NL     +  K   A++ Y+ 
Sbjct: 9   ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXX 385
           A   +P  A+A +N+G   K+  ++  A++CY  A+ I                      
Sbjct: 69  AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI---------------------- 106
Query: 386 XXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA------- 438
                       NP +A+A++NL  +++D+G+I  AI +Y   LK+ PD  +A       
Sbjct: 107 ------------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154
Query: 439 -------------------------GQNRLLAMNY-------INEGHDDKLFEAHRDWGK 466
                                     +NRL +++        ++ G    + E H +   
Sbjct: 155 LQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCL 214
Query: 467 RFMRLYSQ--YTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXX 524
             + +  +  Y    + K  +  L +GYVS D+  H  S+ +++    H+   +      
Sbjct: 215 DKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYA 274
Query: 525 XXXXXXXXTIRFREKVMKKGGIWRDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLG 583
                      FR KVM +   + D+  I    K A  + +D I ILV + G+T   +  
Sbjct: 275 LSPDDGT---NFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNE 331
Query: 584 MMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFL 638
           + A +PAP+Q  W+GYP T+G   +DY ITD    P E  +++ E+L  +P  F 
Sbjct: 332 LFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFF 386

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 7/141 (4%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
           AEA+ N+G  Y  +GD + AI  Y++ L + P         A A  +LG     +GD ++
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-------SAEAWYNLGNAYYKQGDYDE 53
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
            + YY+KAL  +   A+A YNLG AY +   +D AI +Y+ A   +P  AEA  NLG  Y
Sbjct: 54  AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Query: 345 KDRDNLDKAVECYQMALSIKP 365
             + + D+A+E YQ AL + P
Sbjct: 114 YKQGDYDEAIEYYQKALELDP 134

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 72/136 (52%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
           A+A YNLG AY +   +D AI +Y+ A   +P  AEA  NLG  Y  + + D+A+E YQ 
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSIS 419
           AL + P  +++  NLG  Y  QG               +P  AEA+ NLG  Y   G   
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 420 LAIDAYEQCLKIDPDS 435
            AI+ Y++ L++DP S
Sbjct: 121 EAIEYYQKALELDPRS 136

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXX 393
           AEA  NLG  Y  + + D+A+E YQ AL + P  +++  NLG  Y  QG           
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 394 XXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
               +P  AEA+ NLG  Y   G    AI+ Y++ L++DP S  A  N  L   Y  +G 
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN--LGNAYYKQGD 118
Query: 454 DDKLFEAHR 462
            D+  E ++
Sbjct: 119 YDEAIEYYQ 127

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 70/119 (58%)
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323
           N A A  +LG     +GD ++ + YY+KAL  + + A+A YNLG AY +   +D AI +Y
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
           + A   +P+ AEA  NLG  Y  + + D+A+E YQ AL + PN +++  NLG     QG
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 59/110 (53%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
           A+A YNLG AY +   +D AI +Y+ A   +P+ AEA  NLG  Y  + + D+A+E YQ 
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLG 409
           AL + PN +++  NLG  Y  QG               +P  AEA  NLG
Sbjct: 69  ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 58/110 (52%)
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXX 391
           + AEA  NLG  Y  + + D+A+E YQ AL + PN +++  NLG  Y  QG         
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 392 XXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
                 +P  AEA+ NLG  Y   G    AI+ Y++ L++DP++  A QN
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 68/119 (57%)
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323
           N A A  +LG     +GD ++ + YY+KAL    + A+A YNLG AY +   +D AI +Y
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
           + A    P+ AEA  NLG  Y  + + D+A+E YQ AL + PN +++  NLG     QG
Sbjct: 67  QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 65/142 (45%), Gaps = 34/142 (23%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
           A+A YNLG AY +   +D AI +Y+ A    P+ AEA  NLG  Y  + + D+A+E YQ 
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSIS 419
           AL + PN                                   AEA+ NLG  Y   G   
Sbjct: 69  ALELYPNN----------------------------------AEAWYNLGNAYYKQGDYD 94
Query: 420 LAIDAYEQCLKIDPDSRNAGQN 441
            AI+ Y++ L++ P++  A QN
Sbjct: 95  EAIEYYQKALELYPNNAEAKQN 116

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 64/119 (53%)
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323
           N A A  +LG     +GD  + + YY+KAL  + + A A YNLG AY +   +  AI +Y
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
           + A   +P+ A+A    G  Y  + +  KA+E YQ AL + PN +++  NLG     QG
Sbjct: 67  QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 54/110 (49%)
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXX 391
           + AEA  NLG  Y  + +  KA+E YQ AL + PN + +  NLG  Y  QG         
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 392 XXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
                 +P  A+A+   G  Y   G    AI+ Y++ L++DP++  A QN
Sbjct: 67  QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQN 116

>pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac Transferase Homolog: Insight Into Molecular Control Of Intracellular Glycosylation Length = 568

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 79/194 (40%), Gaps = 12/194 (6%)
Query: 487 PLVIGYVSPDYFTHSVSYFIEAPL-VYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGG 545
           PL +G+VS  +  H       A        Q                T+R R   + +  
Sbjct: 205 PLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTR---LAQAS 261
Query: 546 IWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL 605
              D+  +     A  +R   ID+L +L G     +  + A +PAPVQV W+ YP T+G 
Sbjct: 262 TLHDVTALGHLATAKHIRHHGIDLLFDLAGWGGGGRPEVFALRPAPVQVNWLAYPGTSGA 321
Query: 606 PTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTN-GF----I 660
           P +DY + D+ A PP  +  + E ++RL   F    PS  +  V   P+ T  G     +
Sbjct: 322 PWMDYVLGDAFALPPALEPFYSEHVLRLQGAF---QPSDTSRVVAEPPSRTQCGLPEQGV 378
Query: 661 TFGSFNNLAKCKTQ 674
               FNN  K   Q
Sbjct: 379 VLCCFNNSYKLNPQ 392

>pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Apostructure Length = 568

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 79/194 (40%), Gaps = 12/194 (6%)
Query: 487 PLVIGYVSPDYFTHSVSYFIEAPL-VYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGG 545
           PL +G+VS  +  H       A        Q                T+R R   + +  
Sbjct: 205 PLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTR---LAQAS 261
Query: 546 IWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL 605
              D+  +     A  +R   ID+L +L G     +  + A +PAPVQV W+ YP T+G 
Sbjct: 262 TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTSGA 321
Query: 606 PTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTN-GF----I 660
           P +DY + D+ A PP  +  + E ++RL   F    PS  +  V   P+ T  G     +
Sbjct: 322 PWMDYVLGDAFALPPALEPFYSEHVLRLQGAF---QPSDTSRVVAEPPSRTQCGLPEQGV 378
Query: 661 TFGSFNNLAKCKTQ 674
               FNN  K   Q
Sbjct: 379 VLCCFNNSYKLNPQ 392

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
           A+A YNLG AY +   +D AI +Y+ A   +P+ AEA  NLG  Y  + + D+A+E YQ 
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 360 ALSIKPNFSQSLNNLGVVYTVQG 382
           AL + PN +++  NLG     QG
Sbjct: 69  ALELDPNNAEAKQNLGNAKQKQG 91

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPN-----FEIAKNNMAIALTDLGTKVKLEGDI 282
           Y ++G   + +GD + AI  Y++ L   PN      ++ K  M I L             
Sbjct: 8   YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLP------------ 55
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
           N  +   KK +  +   A+A Y LG A   + +   AI   + A   N   A+A   LG+
Sbjct: 56  NDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGL 115
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
           +Y      DKA+E Y+  +SIKP F ++  ++G+ Y  +G
Sbjct: 116 VYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 54/130 (41%)
Query: 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
           FD AI  Y+     +P+  E    LG  Y D    + A+E  +  + +    +++   LG
Sbjct: 21  FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG 80
Query: 376 VVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
               +                 N  YA+AY  LG++Y   G    AI+AYE+ + I P  
Sbjct: 81  SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF 140
Query: 436 RNAGQNRLLA 445
             A Q+  LA
Sbjct: 141 IRAYQSIGLA 150

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
           A+A YNLG AY +   +D AI +Y+ A   +P  AEA  NLG  Y  + + D+A+E YQ 
Sbjct: 3   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 360 ALSIKP 365
           AL + P
Sbjct: 63  ALELDP 68

>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 26/226 (11%)
Query: 66  DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
           +A+ L+E  +++D  ++EA    G          LA  +    ++L P N  A     + 
Sbjct: 42  NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 101
Query: 126 YKDEGRLVEAAESYHKALSADPSY----------------KPAAECLAIVLTDLGTSLKL 169
           + +E    +A E+    L   P+Y                 P+   L  +L+D   SL L
Sbjct: 102 FTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD---SLFL 158
Query: 170 AGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
                +  + +  A+++DP          LGV+++   +YD A+ C+  A   RP     
Sbjct: 159 -----EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 213
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
           +  +G    N    E A+A Y R L + P +  ++ N+ I+  +LG
Sbjct: 214 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 259

>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 28/246 (11%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
           A+  +E A  + P + EA+  +G           AI+   RCL + P+ + A   +A++ 
Sbjct: 43  AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 102
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEM 313
           T+       E    Q     +  L Y   YA  +                  LG    + 
Sbjct: 103 TN-------ESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 155
Query: 314 LKFDMAIVFYELAFHFNPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370
           L  ++  +F   A   +P   +    C  LGV++      DKAV+C+  ALS++PN    
Sbjct: 156 LFLEVKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 213
Query: 371 LNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430
            N LG                       P Y  +  NLG+   + G+   A++ + + L 
Sbjct: 214 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 273
Query: 431 IDPDSR 436
           +   SR
Sbjct: 274 MQRKSR 279

>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal Seven Residues Of Hcn2 Length = 365

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 5/199 (2%)
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
           A+  DP  A A+  LG+  +E      A+   ++    +P   +A   + V Y N    +
Sbjct: 91  AILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ 150
Query: 243 SAIACYERCLAVSPNFE-IAKNNM-AIALTDLGTKVKLEGDINQGVA-YYKKALYYNWHY 299
            A    +  +  +P ++ + KN   +  LT   +K  ++  + +GV   Y +A + N   
Sbjct: 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM 210
Query: 300 ADA--MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
            D      LGV +    +F+ AI  +  A    P      N LG    + D  ++AVE Y
Sbjct: 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270
Query: 358 QMALSIKPNFSQSLNNLGV 376
             AL I+P F +S  NLG+
Sbjct: 271 TRALEIQPGFIRSRYNLGI 289

>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 26/226 (11%)
Query: 66  DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
           +A+ L+E  +++D  ++EA    G          LA  +    ++L P N  A     + 
Sbjct: 42  NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 101
Query: 126 YKDEGRLVEAAESYHKALSADPSY----------------KPAAECLAIVLTDLGTSLKL 169
           + +E    +A E     L   P+Y                 P+   L  +L+D   SL L
Sbjct: 102 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD---SLFL 158
Query: 170 AGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
                +  + +  A+++DP          LGV+++   +YD A+ C+  A   RP     
Sbjct: 159 -----EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 213
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
           +  +G    N    E A+A Y R L + P +  ++ N+ I+  +LG
Sbjct: 214 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 259

>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 28/246 (11%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
           A+  +E A  + P + EA+  +G           AI+   RCL + P+ + A   +A++ 
Sbjct: 43  AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 102
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEM 313
           T+       E    Q     +  L Y   YA  +                  LG    + 
Sbjct: 103 TN-------ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 155
Query: 314 LKFDMAIVFYELAFHFNPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370
           L  ++  +F   A   +P   +    C  LGV++      DKAV+C+  ALS++PN    
Sbjct: 156 LFLEVKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 213
Query: 371 LNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430
            N LG                       P Y  +  NLG+   + G+   A++ + + L 
Sbjct: 214 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 273
Query: 431 IDPDSR 436
           +   SR
Sbjct: 274 MQRKSR 279

>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 26/226 (11%)
Query: 66  DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
           +A+ L+E  +++D  ++EA    G          LA  +    ++L P N  A     + 
Sbjct: 33  NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 92
Query: 126 YKDEGRLVEAAESYHKALSADPSY----------------KPAAECLAIVLTDLGTSLKL 169
           + +E    +A E     L   P+Y                 P+   L  +L+D   SL L
Sbjct: 93  FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD---SLFL 149
Query: 170 AGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
                +  + +  A+++DP          LGV+++   +YD A+ C+  A   RP     
Sbjct: 150 -----EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 204
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
           +  +G    N    E A+A Y R L + P +  ++ N+ I+  +LG
Sbjct: 205 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 250

>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 28/246 (11%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
           A+  +E A  + P + EA+  +G           AI+   RCL + P+ + A   +A++ 
Sbjct: 34  AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 93
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEM 313
           T+       E    Q     +  L Y   YA  +                  LG    + 
Sbjct: 94  TN-------ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 146
Query: 314 LKFDMAIVFYELAFHFNPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370
           L  ++  +F   A   +P   +    C  LGV++      DKAV+C+  ALS++PN    
Sbjct: 147 LFLEVKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 204
Query: 371 LNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430
            N LG                       P Y  +  NLG+   + G+   A++ + + L 
Sbjct: 205 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 264
Query: 431 IDPDSR 436
           +   SR
Sbjct: 265 MQRKSR 270

>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 26/226 (11%)
Query: 66  DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
           +A+ L+E  +++D  ++EA    G          LA  +    ++L P N  A     + 
Sbjct: 19  NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 78
Query: 126 YKDEGRLVEAAESYHKALSADPSY----------------KPAAECLAIVLTDLGTSLKL 169
           + +E    +A E     L   P+Y                 P+   L  +L+D   SL L
Sbjct: 79  FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD---SLFL 135
Query: 170 AGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
                +  + +  A+++DP          LGV+++   +YD A+ C+  A   RP     
Sbjct: 136 -----EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 190
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
           +  +G    N    E A+A Y R L + P +  ++ N+ I+  +LG
Sbjct: 191 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 236

>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 28/246 (11%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
           A+  +E A  + P + EA+  +G           AI+   RCL + P+ + A   +A++ 
Sbjct: 20  AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 79
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEM 313
           T+       E    Q     +  L Y   YA  +                  LG    + 
Sbjct: 80  TN-------ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 132
Query: 314 LKFDMAIVFYELAFHFNPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370
           L  ++  +F   A   +P   +    C  LGV++      DKAV+C+  ALS++PN    
Sbjct: 133 LFLEVKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 190
Query: 371 LNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430
            N LG                       P Y  +  NLG+   + G+   A++ + + L 
Sbjct: 191 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 250
Query: 431 IDPDSR 436
           +   SR
Sbjct: 251 MQRKSR 256

>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 26/226 (11%)
Query: 66  DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
           +A+ L+E  +++D  ++EA    G          LA  +    ++L P N  A     + 
Sbjct: 82  NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 141
Query: 126 YKDEGRLVEAAESYHKALSADPSY----------------KPAAECLAIVLTDLGTSLKL 169
           + +E    +A E     L   P+Y                 P+   L  +L+D   SL L
Sbjct: 142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD---SLFL 198
Query: 170 AGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
                +  + +  A+++DP          LGV+++   +YD A+ C+  A   RP     
Sbjct: 199 -----EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
           +  +G    N    E A+A Y R L + P +  ++ N+ I+  +LG
Sbjct: 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 299

>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 28/246 (11%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
           A+  +E A  + P + EA+  +G           AI+   RCL + P+ + A   +A++ 
Sbjct: 83  AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 142
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEM 313
           T+       E    Q     +  L Y   YA  +                  LG    + 
Sbjct: 143 TN-------ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195
Query: 314 LKFDMAIVFYELAFHFNPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370
           L  ++  +F   A   +P   +    C  LGV++      DKAV+C+  ALS++PN    
Sbjct: 196 LFLEVKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253
Query: 371 LNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430
            N LG                       P Y  +  NLG+   + G+   A++ + + L 
Sbjct: 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313
Query: 431 IDPDSR 436
           +   SR
Sbjct: 314 MQRKSR 319

>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide Length = 327

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 14/185 (7%)
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
           LA  + + A  LDP++   H    + + +E     A  S    L + P Y+         
Sbjct: 73  LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA 132
Query: 160 LTDLGTSLKLAGNTQD----GIQKYYE-------ALKIDPHYAPAYYNLGVVYSELMQYD 208
             D+     L   ++D       +Y E       AL+++P+ A  + +LGV+Y+    YD
Sbjct: 133 DVDID---DLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYD 189
Query: 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
           +A     +A   RP  A+ +  +G    N    + A+  Y R L ++P +     NMA++
Sbjct: 190 SAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249
Query: 269 LTDLG 273
            +++ 
Sbjct: 250 YSNMS 254

>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed To Pts1 Peptide (7- Skl) Length = 327

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 14/211 (6%)
Query: 74  VLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV 133
           V +K+    EA    G+         LA  + + A  LDP +   H    + + +E    
Sbjct: 47  VCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARALDPADIAVHAALAVSHTNEHNAN 106
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD----GIQKYYE------- 182
            A  S    L + P Y+           D+     L   ++D       +Y E       
Sbjct: 107 AALASLRAWLLSQPQYEQLGSVNLQADVDID---DLNVQSEDFFFAAPNEYRECRTLLHA 163
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
           AL+++P+ A  + +LGV+Y+    YD+A     +A   RP  A+ +  +G    N    +
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
            A+  Y R L ++P +     NMA++ +++ 
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMS 254

>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual Peptide- Binding Site Length = 243

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 13/169 (7%)
Query: 52  LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
           +++AN+L S N+   ALA Y+  LE DS    A+ G G    ++ M + A D F +A++ 
Sbjct: 61  INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL---AIVLTDLGTSLK 168
             +N       G L+   G ++   E    AL   P  + A E            G  L 
Sbjct: 121 GMEN-------GDLFYMLGTVLVKLEQPKLAL---PYLQRAVELNENDTEARFQFGMCLA 170
Query: 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
             G   + + ++    + DP +A A+YN GV Y+     + AL   +KA
Sbjct: 171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA 219

>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual Peptide- Binding Site Length = 243

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 11/204 (5%)
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
           G+ +   + + +A++ +   A  Y N   + S + + + AL  Y+KA       A AY  
Sbjct: 37  GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG 96
Query: 231 MGVIYKNRGDLESAIACYERCL-AVSPNFEIAKNNMAIALTDLGTK-VKLEGDINQGVAY 288
            G +Y  +   + A   +E+ L A   N ++           LGT  VKLE      + Y
Sbjct: 97  AGNVYVVKEMYKEAKDMFEKALRAGMENGDL--------FYMLGTVLVKLE-QPKLALPY 147
Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348
            ++A+  N +  +A +  G+        D A+  +      +P  A+A  N GV Y  ++
Sbjct: 148 LQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE 207
Query: 349 NLDKAVECYQMALSIKPNFSQSLN 372
           N +KA+E    A+ I+P+   +L+
Sbjct: 208 NREKALEMLDKAIDIQPDHMLALH 231

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 167 LKLAGNTQDGIQK-------YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
           LK  GN Q  ++        Y +A++++P  A  + N    YS+L  Y  A+   E+A  
Sbjct: 15  LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 272
             P Y++AY  MG+   +      A+A Y++ L + P+ E  K+N+ IA   L
Sbjct: 75  IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127

>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1 Length = 597

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 94/244 (38%), Gaps = 27/244 (11%)
Query: 41  STLKGFEGKD--ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG 98
           S++ G E      L  A+ L  R++F+D LA+   +LE D  N++ +      L      
Sbjct: 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK 355
Query: 99  RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
              +   ++ V   P+ A      GI Y    ++ EA   + K+ + DP + PA      
Sbjct: 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA------ 409
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---------MQYDT 209
                  S  + G     I  Y  A ++       Y  LG+ + +L         +Q   
Sbjct: 410 -WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
           AL  Y+   L           +GV+  N+ D+++AI  ++  L +    +  +   A   
Sbjct: 469 ALFQYDPLLLNE---------LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519
Query: 270 TDLG 273
            +LG
Sbjct: 520 ANLG 523

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/260 (20%), Positives = 96/260 (36%), Gaps = 33/260 (12%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC-LAIVLTDLGTSLKLAGNTQ 174
           A A  + GI +  +  L++A     ++++  P+  P +   LA+ L D         N+Q
Sbjct: 239 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLAD-------KENSQ 289
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
           +  + + +A+ ++P Y P YY+ G +Y  L  Y  A   ++KA    P     Y  +  +
Sbjct: 290 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACL 349
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
              +G    + A +       P         A  LTD        GD +  +  Y  A  
Sbjct: 350 LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD-------RGDFDTAIKQYDIAKR 402
Query: 295 YNWHYADAMYNLGVAYGEML----------------KFDMAIVFYELAFHFNPHCAEACN 338
                      +G   G+                  KF+ AI     A   +P   +A  
Sbjct: 403 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKI 462
Query: 339 NLGVIYKDRDNLDKAVECYQ 358
            L  +    + +D+A+E ++
Sbjct: 463 GLAQLKLQMEKIDEAIELFE 482

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/260 (20%), Positives = 96/260 (36%), Gaps = 33/260 (12%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC-LAIVLTDLGTSLKLAGNTQ 174
           A A  + GI +  +  L++A     ++++  P+  P +   LA+ L D         N+Q
Sbjct: 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLAD-------KENSQ 293
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
           +  + + +A+ ++P Y P YY+ G +Y  L  Y  A   ++KA    P     Y  +  +
Sbjct: 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACL 353
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
              +G    + A +       P         A  LTD        GD +  +  Y  A  
Sbjct: 354 LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD-------RGDFDTAIKQYDIAKR 406
Query: 295 YNWHYADAMYNLGVAYGEML----------------KFDMAIVFYELAFHFNPHCAEACN 338
                      +G   G+                  KF+ AI     A   +P   +A  
Sbjct: 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKI 466
Query: 339 NLGVIYKDRDNLDKAVECYQ 358
            L  +    + +D+A+E ++
Sbjct: 467 GLAQLKLQMEKIDEAIELFE 486

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	689
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-132
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-100
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-83
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-71
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-66
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-104
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-31
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-28
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-26
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-20
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	9e-16
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-85
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-75
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-73
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-67
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-28
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-84
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-59
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-21
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-83
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-79
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-78
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-73
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-64
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-60
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-39
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-77
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-75
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-59
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-45
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-41
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-74
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-62
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-28
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-25
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-73
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-68
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-65
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-31
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-71
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-70
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-70
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-59
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-53
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-50
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-44
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-70
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-68
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-46
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-27
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-25
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-70
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-70
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-70
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-60
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-60
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-26
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-24
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-69
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-61
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-50
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-47
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-47
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-45
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-35
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-26
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-68
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-67
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-66
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-63
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-58
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-52
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-24
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-65
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-63
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-58
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-51
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-51
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-38
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-27
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-64
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-56
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-43
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-39
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-63
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-58
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-55
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-47
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-42
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-37
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-63
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-62
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-61
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-61
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-60
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-58
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-53
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-49
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-49
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-46
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-44
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-37
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-36
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-63
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-55
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-47
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-42
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-29
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-61
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-58
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-55
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-52
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-39
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-21
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-60
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-53
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-52
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-44
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-60
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-50
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-38
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-28
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-17
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-58
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-51
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-19
3q3e_A	631	HMW1C-like glycosyltransferase; N-glycosylation; 2	1e-54
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-54
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-39
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-37
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-23
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-53
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-51
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-47
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-42
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-42
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-31
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	8e-17
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	8e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-50
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	6e-29
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-50
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-49
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-39
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-34
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-48
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-40
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-34
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-33
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-21
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-17
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-48
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-45
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-42
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-43
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-36
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-31
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-28
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-40
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-35
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-31
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	6e-39
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-34
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	5e-34
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-34
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-33
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-24
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-19
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-15
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	8e-35
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	3e-34
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-28
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	7e-33
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-32
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-30
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-22
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-21
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-32
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	9e-29
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-27
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	7e-22
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-21
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-28
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	3e-27
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	3e-25
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	1e-22
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-20
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	3e-20
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	9e-12
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	8e-06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-27
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-23
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-20
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-20
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-13
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-11
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	8e-27
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	9e-26
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	6e-25
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-19
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-26
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-22
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	9e-20
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-16
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-26
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-22
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-22
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-21
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-21
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-19
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-18
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-17
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-14
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	7e-26
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-16
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-13
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-12
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-10
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	9e-25
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-19
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-17
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-24
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-24
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-22
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	7e-22
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-21
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-16
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-15
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-13
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	7e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-23
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-22
2kat_A	115	Uncharacterized protein; NESG, structure, structur	8e-21
2kat_A	115	Uncharacterized protein; NESG, structure, structur	6e-18
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-18
2kat_A	115	Uncharacterized protein; NESG, structure, structur	8e-14
2kat_A	115	Uncharacterized protein; NESG, structure, structur	8e-14
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-12
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-23
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-22
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-22
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-18
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-15
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-22
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	6e-20
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-17
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-16
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	4e-12
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-08
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	8e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-21
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-20
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-18
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-18
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-16
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-15
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-10
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	7e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-05
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	4e-21
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	3e-19
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	2e-11
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	8e-21
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-17
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-15
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-15
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-14
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	5e-13
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-10
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-20
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-20
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-19
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-17
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	9e-14
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-12
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-20
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	4e-20
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	7e-18
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-17
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-15
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-14
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-09
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-09
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-20
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-19
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-18
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-17
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-15
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-12
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-11
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-04
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	3e-19
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	3e-18
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	6e-13
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	1e-09
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	3e-19
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	5e-17
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-13
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-09
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-18
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-17
3k9i_A	117	BH0479 protein; putative protein binding protein,	6e-16
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-14
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-13
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-12
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-12
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-09
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-08
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-17
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-15
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	4e-12
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-09
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-07
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-06
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-06
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	9e-17
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	7e-13
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	3e-12
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	1e-09
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-16
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	3e-16
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	6e-16
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	9e-12
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	7e-16
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	1e-15
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	3e-11
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	3e-11
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-15
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-15
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	5e-12
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-10
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-06
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	5e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	3e-15
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	1e-12
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	2e-10
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	3e-15
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	5e-14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	5e-10
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-07
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-07
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-06
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	9e-14
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-11
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-07
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-05
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-05
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-13
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-13
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-08
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-07
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	6e-07
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-06
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	8e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-12
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	9e-12
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	5e-11
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-10
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	9e-10
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	6e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-05
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-12
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	7e-12
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-07
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	9e-07
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	9e-06
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	3e-12
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	8e-12
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-06
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	7e-05
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	8e-05
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	1e-11
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	3e-09
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	1e-08
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	8e-07
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	2e-04
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	7e-11
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-10
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	9e-06
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-05
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-05
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-05
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-04
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-10
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	9e-09
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-05
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	9e-05
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-04
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-04
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	4e-04
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	4e-10
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	4e-09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-06
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	7e-06
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-08
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-07
2l6j_A	111	TPR repeat-containing protein associated with HSP;	4e-06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-05
2l6j_A	111	TPR repeat-containing protein associated with HSP;	5e-05
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	2e-09
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	6e-09
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	3e-08
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	4e-08
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	9e-09
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	9e-07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	1e-07
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	1e-07
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	7e-05
1klx_A	138	Cysteine rich protein B; structural genomics, heli	2e-07
1klx_A	138	Cysteine rich protein B; structural genomics, heli	7e-06
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-07
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-06
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	7e-06
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	9e-07
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	6e-05
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	9e-07
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	2e-04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-05
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	4e-04
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-05
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	2e-05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	5e-05
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	2e-05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-04
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	1e-04
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	2e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	8e-04

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  394 bits (1014), Expect = e-132
 Identities = 102/388 (26%), Positives = 175/388 (45%), Gaps = 14/388 (3%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
           A+       F  A      +  ++  N    +              +    + A+K +P 
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
            A A+++ G +YK+ G+L EA E Y  AL   P +      LA  L   G       + +
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG-------DME 118

Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
             +Q Y  AL+ +P       +LG +   L + + A  CY KA   +P +A A+ N+G +
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178

Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
           +  +G++  AI  +E+ + + PNF  A  N+   L +           ++ VA Y +AL 
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR-------IFDRAVAAYLRALS 231

Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354
            + ++A    NL   Y E    D+AI  Y  A    PH  +A  NL    K++ ++ +A 
Sbjct: 232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291

Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
           +CY  AL + P  + SLNNL  +   QG ++ A  +  KA+   P +A A++NL  + + 
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351

Query: 415 AGSISLAIDAYEQCLKIDPDSRNAGQNR 442
            G +  A+  Y++ ++I P   +A  N 
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNM 379

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  312 bits (801), Expect = e-100
 Identities = 96/364 (26%), Positives = 172/364 (47%), Gaps = 18/364 (4%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLD 112
           ++I     +   +     + ++++    EA+   G   +    G+L  A + +  A++L 
Sbjct: 40  SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK--ERGQLQEAIEHYRHALRLK 97

Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
           P     + +        G +  A ++Y  AL  +P           V +DLG  LK  G 
Sbjct: 98  PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL-------YCVRSDLGNLLKALGR 150

Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
            ++    Y +A++  P++A A+ NLG V++   +   A+  +EKA    P + +AY N+G
Sbjct: 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210

Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
            + K     + A+A Y R L++SPN  +   N+A    + G        I+  +  Y++A
Sbjct: 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG-------LIDLAIDTYRRA 263

Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
           +    H+ DA  NL  A  E      A   Y  A    P  A++ NNL  I +++ N+++
Sbjct: 264 IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323

Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
           AV  Y+ AL + P F+ + +NL  V   QGK+  A    ++AI  +PT+A+AY+N+G   
Sbjct: 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383

Query: 413 RDAG 416
           ++  
Sbjct: 384 KEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  267 bits (684), Expect = 4e-83
 Identities = 75/281 (26%), Positives = 126/281 (44%), Gaps = 7/281 (2%)

Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
           +L      AG+ +   +   +  + +P        L  ++ +  + D +      A  + 
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
           P+ AEAY N+G +YK RG L+ AI  Y   L + P+F     N+A AL          GD
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA-------GD 116

Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
           +   V  Y  AL YN        +LG     + + + A   Y  A    P+ A A +NLG
Sbjct: 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176

Query: 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401
            ++  +  +  A+  ++ A+++ PNF  +  NLG V       D A     +A++ +P +
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236

Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
           A  + NL  +Y + G I LAID Y + +++ P   +A  N 
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  234 bits (600), Expect = 7e-71
 Identities = 77/297 (25%), Positives = 130/297 (43%), Gaps = 18/297 (6%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLD 112
           A  L +      A+  Y   L+ +          G  L+   +GRL  A   + +A++  
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK--ALGRLEEAKACYLKAIETQ 165

Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
           P  A A ++ G ++  +G +  A   + KA++ DP++            +LG  LK A  
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-------LDAYINLGNVLKEARI 218

Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
               +  Y  AL + P++A  + NL  VY E    D A+  Y +A   +P + +AYCN+ 
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
              K +G +  A  CY   L + P    + NN+A    + G       +I + V  Y+KA
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG-------NIEEAVRLYRKA 331

Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349
           L     +A A  NL     +  K   A++ Y+ A   +P  A+A +N+G   K+  +
Sbjct: 332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  223 bits (571), Expect = 1e-66
 Identities = 55/249 (22%), Positives = 102/249 (40%), Gaps = 7/249 (2%)

Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
              L     +   ++ A     +   + P        +  I+     L+ +       + 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 254 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 313
            +P    A +N+     +        G + + + +Y+ AL     + D   NL  A    
Sbjct: 62  QNPLLAEAYSNLGNVYKER-------GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA 114

Query: 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 373
              + A+  Y  A  +NP      ++LG + K    L++A  CY  A+  +PNF+ + +N
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174

Query: 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
           LG V+  QG++  A    EKA+  +P + +AY NLG + ++A     A+ AY + L + P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 434 DSRNAGQNR 442
           +      N 
Sbjct: 235 NHAVVHGNL 243

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score =  327 bits (841), Expect = e-104
 Identities = 78/396 (19%), Positives = 129/396 (32%), Gaps = 11/396 (2%)

Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
           +  D  + +   + A+ +      A   L  A   M       +  +     +P   EA 
Sbjct: 1   MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60

Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
             LG +   +    +A    Q A    P        LG      G+ +AAA    +A   
Sbjct: 61  ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120

Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457
            P        L    R         D     ++               ++   +    + 
Sbjct: 121 LPEEPYITAQLLNWRRRLCDWRAL-DVLSAQVRAAVAQGVGAVEPFAFLSE--DASAAEQ 177

Query: 458 FEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQN 517
               R   +      S           + PL +G+VS  +  H       A       + 
Sbjct: 178 LACARTRAQAIAA--SVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQ 235

Query: 518 YKVVVYS-AVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGH 576
             + ++  A    D  T+R R   + +     D+  +     A  +R   ID+L +L G 
Sbjct: 236 PDLQMHLFATSGDDGSTLRTR---LAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGW 292

Query: 577 TANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPEC 636
               +  + A +PAPVQV W+ YP T+G P +DY + D+ A PP  +  + E ++RL   
Sbjct: 293 GGGGRPEVFALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGA 352

Query: 637 FLCYTPSPEAG--PVCPTPALTNGFITFGSFNNLAK 670
           F     S      P      L    +    FNN  K
Sbjct: 353 FQPSDTSRVVAEPPSRTQCGLPEQGVVLCCFNNSYK 388

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score =  126 bits (319), Expect = 7e-31
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 7/150 (4%)

Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
                       A+   P          +    L  +    G+T  G       L + P 
Sbjct: 3   ADGPRELLQLRAAVRHRPQD-------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPG 55

Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
           +  A   LG V     ++  A    ++A+   P +      +G   ++ G  E+A A Y 
Sbjct: 56  HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115

Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
           R   + P        +      L     L+
Sbjct: 116 RAHQLLPEEPYITAQLLNWRRRLCDWRALD 145

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score =  119 bits (301), Expect = 1e-28
 Identities = 23/201 (11%), Positives = 50/201 (24%), Gaps = 7/201 (3%)

Query: 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 228
           +  +    + +   A++  P    A+  L      +          ++     P + EA 
Sbjct: 1   MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60

Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
             +G +   +     A    ++    +P        +  AL D        G      A 
Sbjct: 61  ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA-------GQAEAAAAA 113

Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348
           Y +A             L      +  +    V              A      + +D  
Sbjct: 114 YTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDAS 173

Query: 349 NLDKAVECYQMALSIKPNFSQ 369
             ++       A +I  +   
Sbjct: 174 AAEQLACARTRAQAIAASVRP 194

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score =  113 bits (285), Expect = 1e-26
 Identities = 21/156 (13%), Positives = 37/156 (23%), Gaps = 9/156 (5%)

Query: 98  GRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
                       AV+  PQ+  A           G       +  + L+  P +  A   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
           L  V               +      +A    P +      LG    +  Q + A   Y 
Sbjct: 63  LGRVRWTQQ-------RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115

Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251
           +A    P        +    +   D  +      + 
Sbjct: 116 RAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQV 151

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 93.0 bits (231), Expect = 7e-20
 Identities = 23/145 (15%), Positives = 40/145 (27%), Gaps = 7/145 (4%)

Query: 66  DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
             L      +     +  A +                 +    + L P +  A    G +
Sbjct: 7   RELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66

Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
              + R  EAA    +A  A P +         +   LG +L+ AG  +     Y  A +
Sbjct: 67  RWTQQRHAEAAVLLQQASDAAPEH-------PGIALWLGHALEDAGQAEAAAAAYTRAHQ 119

Query: 186 IDPHYAPAYYNLGVVYSELMQYDTA 210
           + P        L      L  +   
Sbjct: 120 LLPEEPYITAQLLNWRRRLCDWRAL 144

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 79.9 bits (197), Expect = 9e-16
 Identities = 20/111 (18%), Positives = 30/111 (27%)

Query: 54  YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
            A+               +  L    G+ EA    G     Q     A     +A    P
Sbjct: 29  LADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88

Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
           ++       G   +D G+   AA +Y +A    P        L      L 
Sbjct: 89  EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 10/99 (10%), Positives = 28/99 (28%)

Query: 54  YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
              +  ++ +  +A  L +   +    +    +  G  L+       A  +++ A +L P
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152
           +            +             +  +A      A
Sbjct: 123 EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  278 bits (713), Expect = 5e-85
 Identities = 63/403 (15%), Positives = 133/403 (33%), Gaps = 24/403 (5%)

Query: 54  YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFD---SFSEAVK 110
              +  + + F  A   Y+  L  D+   EA         +            ++S   K
Sbjct: 206 RGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265

Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
            D     +     +        +  AE Y  +++            + +L     +L + 
Sbjct: 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKS-------SDLLLCKADTLFVR 318

Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
               D +    + L+IDP+    Y        E  + +             P  A  +  
Sbjct: 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLA 378

Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
           +G+ Y     +  A   + +   + P F  A    A +    G       + +Q ++ Y 
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG-------EHDQAISAYT 431

Query: 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350
            A             LG+ + ++    +A  + + ++    +     N LGV+  ++ ++
Sbjct: 432 TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDM 491

Query: 351 DKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
             A+  +Q AL +       +  ++ +  NLG  Y      DAA + + + +  +   A 
Sbjct: 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551

Query: 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
            +  + ++Y       LAI    + L I P+   A      A+
Sbjct: 552 VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  252 bits (645), Expect = 3e-75
 Identities = 63/402 (15%), Positives = 120/402 (29%), Gaps = 27/402 (6%)

Query: 47  EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
              + L   N  R   K  + L + +  ++ ++        +G      +    A + + 
Sbjct: 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEA---SMCYLRGQVYTNLSNFDRAKECYK 224

Query: 107 EAVKLDPQNACAHTHCG---ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
           EA+ +D +   A        +L  DE   +    +Y      D ++  +       L  L
Sbjct: 225 EALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS-------LYML 277

Query: 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223
             +     +     + Y  ++      +              ++   L    K     P 
Sbjct: 278 KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY 337

Query: 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283
             + Y          G+           +   P   +    + I    +         I+
Sbjct: 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN-------KIS 390

Query: 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343
           +   Y+ K+   +  +  A      ++    + D AI  Y  A             LG+ 
Sbjct: 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ 450

Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------ 397
           +    N+  A E  Q + ++       LN LGVV   +  M  A    + A+        
Sbjct: 451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510

Query: 398 -NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
               +A  + NLG  YR       AIDA  Q L +  +  N 
Sbjct: 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  247 bits (632), Expect = 2e-73
 Identities = 53/377 (14%), Positives = 117/377 (31%), Gaps = 22/377 (5%)

Query: 46  FEGKDALSYANILRSRNKFVDALAL-YEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
           +E  D L   ++L +  ++   L L Y    ++D+  + +     +            + 
Sbjct: 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293

Query: 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
           +  ++    +++              R ++      K L  DP            L + G
Sbjct: 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG 353

Query: 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224
                            + +   P  A  +  +G+ Y  + +   A   + K++   P +
Sbjct: 354 -------EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406

Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
             A+      +   G+ + AI+ Y     +     +    + +    LG       +I  
Sbjct: 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG-------NILL 459

Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA-------FHFNPHCAEAC 337
              Y + +     +    +  LGV          AI  ++ A              A   
Sbjct: 460 ANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519

Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
            NLG  Y+     D A++     L +  N +     + +VY  +     A   + +++A 
Sbjct: 520 ANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579

Query: 398 NPTYAEAYNNLGVLYRD 414
           +P    A + L     +
Sbjct: 580 SPNEIMASDLLKRALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  231 bits (590), Expect = 2e-67
 Identities = 65/405 (16%), Positives = 119/405 (29%), Gaps = 18/405 (4%)

Query: 51  ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
           A          N+      L    L K      A    G     +   + A     +   
Sbjct: 136 AKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG 195

Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
           +  + A      G +Y +      A E Y +AL  D     A + L          L  A
Sbjct: 196 IKLE-ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV------SNHLLTA 248

Query: 171 GNTQDGIQK--YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 228
               D + K  Y    K D  +  + Y L +  +           Y  +       ++  
Sbjct: 249 DEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL 308

Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
                    R      +A   + L + P           +L + G K KL          
Sbjct: 309 LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL-------YLI 361

Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348
               +  +   A     +G+ Y  + K   A  ++  +   +P    A       +    
Sbjct: 362 SNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG 421

Query: 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
             D+A+  Y  A  +          LG+ +   G +  A E ++ + A         N L
Sbjct: 422 EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL 481

Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
           GV+  +   +  AI+ ++  L +   +++  +       + N GH
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT--WANLGH 524

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  119 bits (299), Expect = 3e-28
 Identities = 45/267 (16%), Positives = 76/267 (28%), Gaps = 16/267 (5%)

Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE------ 259
           QY  A    EK         +A+  +  +Y   GD   A     +    + +        
Sbjct: 99  QYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAA 157

Query: 260 ---IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 316
              +   +   AL  LG       D         +        A   Y  G  Y  +  F
Sbjct: 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE-ASMCYLRGQVYTNLSNF 216

Query: 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE---CYQMALSIKPNFSQSLNN 373
           D A   Y+ A   +  C EA + L   +    + +  +     Y         F +SL  
Sbjct: 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276

Query: 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
           L +  T        AE    +I      ++                  +    + L+IDP
Sbjct: 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP 336

Query: 434 DSRNAGQNRLLAMNYINEGHDDKLFEA 460
            + +     L +      G  +KL+  
Sbjct: 337 YNLDVYPLHLAS--LHESGEKNKLYLI 361

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  280 bits (716), Expect = 2e-84
 Identities = 99/431 (22%), Positives = 177/431 (41%), Gaps = 27/431 (6%)

Query: 252 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 311
               P    + NN+A    + G       +I + V  Y+KAL     +A A  NL     
Sbjct: 2   PGSCPTHADSLNNLANIKREQG-------NIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 54

Query: 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371
           +  K   A++ Y+ A   +P  A+A +N+G   K+  ++  A++CY  A+ I P F+ + 
Sbjct: 55  QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAH 114

Query: 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
           +NL  ++   G +  A      A+   P + +AY NL    +     +   +  ++ + I
Sbjct: 115 SNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174

Query: 432 DPDSRNAGQN----RLLAMNYINEGHDDKLF---EAHRDWGKRFMRLYSQYTSWDNTKDP 484
             D     +        +M Y       K       +    K  +     Y    + K  
Sbjct: 175 VADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS 234

Query: 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYS-AVVKADAKTIRFREKVMKK 543
           +  L +GYVS D+  H  S+ +++    H+   ++V  Y+ +        ++   +    
Sbjct: 235 DGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEA--- 291

Query: 544 GGIWRDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNT 602
              + D+  I    K A  + +D I ILV + G+T   +  + A +PAP+Q  W+GYP T
Sbjct: 292 -NHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGT 350

Query: 603 TGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPS---PEAGPVCPTPALTNGF 659
           +G   +DY ITD    P E  +++ E+L  +P  F     +   P           +NG 
Sbjct: 351 SGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKKKAVIDFKSNGH 410

Query: 660 ITFGSFNNLAK 670
           I    ++N   
Sbjct: 411 I----YDNRIV 417

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  210 bits (535), Expect = 7e-59
 Identities = 88/568 (15%), Positives = 156/568 (27%), Gaps = 45/568 (7%)

Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
             P +A +  +   + +++G + EA   Y KAL   P +  A   LA VL   G      
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG------ 57

Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
              Q+ +  Y EA++I P +A AY N+G    E+     AL CY +A    P +A+A+ N
Sbjct: 58  -KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116

Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
           +  I+K+ G++  AIA Y   L + P+F  A  N+A  L  +        D        K
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV-------CDWTDYDERMK 169

Query: 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350
           K +       +    L   +            +  A                        
Sbjct: 170 KLVSIVADQLEK-NRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKI----------- 217

Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
              +             S     +G V +  G    +  M       NP   E +     
Sbjct: 218 -NVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALS 276

Query: 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMR 470
                      +      + +     N      +  + I+   +   +          +R
Sbjct: 277 PDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALR 336

Query: 471 LYSQYTSWDNTKDPERPLVIGYVSPDYFTH---SVSYFIEAPLVYHD-YQNYKVVVYSAV 526
                  W         L + Y+  D  T        + E        +      +    
Sbjct: 337 PAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFF-----IGDHA 391

Query: 527 VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMA 586
                   +        G I+ +   ++   + A +       +V++      +      
Sbjct: 392 NMFPHLKKKAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADS-- 449

Query: 587 CQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPE----CFLCYTP 642
              +   +     P  T    +   I                 L               P
Sbjct: 450 ---SNTALNMPVIPMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGEEVP 506

Query: 643 SPEAGPVCPTPALTNGFITFGSFNNLAK 670
                       L    I + +FN L K
Sbjct: 507 RTIIVTTRSQYGLPEDAIVYCNFNQLYK 534

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 99.1 bits (246), Expect = 1e-21
 Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 8/173 (4%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
           A++L+ + K  +AL  Y+  +       +A+   G  L+     + A   ++ A++++P 
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
            A AH++   ++KD G + EA  SY  AL   P +            +L   L++  +  
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF-------PDAYCNLAHCLQIVCDWT 162

Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
           D  ++  + + I          L  V+            + KA  ER      
Sbjct: 163 DYDERMKKLVSIVADQLEK-NRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCL 214

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  270 bits (691), Expect = 7e-83
 Identities = 41/400 (10%), Positives = 102/400 (25%), Gaps = 17/400 (4%)

Query: 49  KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
           +  ++ A+     ++       L +           V A        Q     +      
Sbjct: 70  EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129

Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
            +A  L P+   A        +    +        +A    P          + +   G 
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ-------VVAIASNGG 182

Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
             +     Q  +    +A  + P    A  + G     L      L    +A    P   
Sbjct: 183 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 242

Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285
            A  + G   +    ++  +    +   ++P   +A  + +     L         + + 
Sbjct: 243 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE-------TVQRL 295

Query: 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
           +    +A         A+ + G     +      +     A    P    A  +     +
Sbjct: 296 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 355

Query: 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
             + + + +     A  + P    ++ + G        +     ++ +A    P    A 
Sbjct: 356 ALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAI 415

Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
            +     +   ++   +    Q   + P    A  +    
Sbjct: 416 ASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 455

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  261 bits (669), Expect = 1e-79
 Identities = 41/384 (10%), Positives = 95/384 (24%), Gaps = 14/384 (3%)

Query: 53  SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
           S+    ++       L +           V A        Q     +       +A  L 
Sbjct: 111 SHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT 170

Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
           P+   A    G   +    +        +A    P          + +   G   +    
Sbjct: 171 PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ-------VVAIASNGGGKQALET 223

Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
            Q  +    +A  + P    A  + G     L      L    +A    P    A  +  
Sbjct: 224 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNS 283

Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
              +    ++  +    +   ++P   +A  +       L         + + +    +A
Sbjct: 284 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE-------TVQRLLPVLCQA 336

Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
                    A+ +       +      +     A    P    A  + G   +  + + +
Sbjct: 337 HGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQR 396

Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
            +     A  + P    ++ +          +     ++ +A    P    A  + G   
Sbjct: 397 LLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGR 456

Query: 413 RDAGSISLAIDAYEQCLKIDPDSR 436
               SI   +   +  L    +  
Sbjct: 457 PALESIVAQLSRPDPALAALTNDH 480

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  258 bits (660), Expect = 2e-78
 Identities = 45/402 (11%), Positives = 101/402 (25%), Gaps = 21/402 (5%)

Query: 49  KDALSYANILRSRNKFVDALALYEIVLEK-----DSGNVEAHIGKGICLQMQNMGRLAFD 103
              L  A   R     V+A+  +   L           V A        Q     +    
Sbjct: 36  GQLLKIAK--RGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLP 93

Query: 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
              +A  L PQ   A        +    +        +A    P          + +   
Sbjct: 94  VLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ-------VVAIASH 146

Query: 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223
               +     Q  +    +A  + P    A  + G     L      L    +A    P 
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 206

Query: 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283
              A  + G   +    ++  +    +   ++P   +A  +       L         + 
Sbjct: 207 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQAL-------ETVQ 259

Query: 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343
           + +    +A         A+ +       +      +     A    P    A  + G  
Sbjct: 260 RLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 319

Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
            +  + + + +     A  + P    ++ +          +     ++ +A    P    
Sbjct: 320 KQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV 379

Query: 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
           A  + G   +   ++   +    Q   + P+   A  +    
Sbjct: 380 AIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  244 bits (624), Expect = 4e-73
 Identities = 39/379 (10%), Positives = 99/379 (26%), Gaps = 14/379 (3%)

Query: 67  ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126
           A  L    L+ D+G +     +G    ++ +           + L P+   A        
Sbjct: 23  AGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGK 82

Query: 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186
           +    +        +A    P          + +       +     Q  +    +A  +
Sbjct: 83  QALETVQRLLPVLCQAHGLTPQQ-------VVAIASHDGGKQALETVQRLLPVLCQAHGL 135

Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
            P    A  +       L      L    +A    P    A  + G   +    ++  + 
Sbjct: 136 TPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 195

Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
              +   ++P   +A  +       L         + + +    +A         A+ + 
Sbjct: 196 VLCQAHGLTPQQVVAIASNGGGKQAL-------ETVQRLLPVLCQAHGLTPQQVVAIASN 248

Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
           G     +      +     A    P    A  +     +  + + + +     A  + P 
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQ 308

Query: 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426
              ++ + G        +     ++ +A    P    A  +     +   ++   +    
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 368

Query: 427 QCLKIDPDSRNAGQNRLLA 445
           Q   + P+   A  +    
Sbjct: 369 QAHGLTPEQVVAIASNGGG 387

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  219 bits (559), Expect = 8e-64
 Identities = 36/363 (9%), Positives = 93/363 (25%), Gaps = 14/363 (3%)

Query: 83  EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142
             H        ++ +  +A +     ++LD          G +   E             
Sbjct: 5   HHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAP 64

Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202
           L+  P          + +       +     Q  +    +A  + P    A  +      
Sbjct: 65  LNLTPEQ-------VVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 117

Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
            L      L    +A    P    A  +     +    +++ +    +   ++P   +A 
Sbjct: 118 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAI 177

Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322
            +       L         + + +    +A         A+ + G     +      +  
Sbjct: 178 ASNGGGKQAL-------ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 230

Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
              A    P    A  + G   +  + + + +     A  + P    ++ +         
Sbjct: 231 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE 290

Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
            +     ++ +A    P    A  + G   +   ++   +    Q   + P    A  + 
Sbjct: 291 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 350

Query: 443 LLA 445
              
Sbjct: 351 DGG 353

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  209 bits (535), Expect = 2e-60
 Identities = 37/332 (11%), Positives = 86/332 (25%), Gaps = 14/332 (4%)

Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
           ++   H         E  L  A E     L  D         L I      T+++     
Sbjct: 2   EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQ-----LLKIAKRGGVTAVEAVHAW 56

Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
           ++ +      L + P    A  +       L      L    +A    P    A  +   
Sbjct: 57  RNALTG--APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDG 114

Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
             +    ++  +    +   ++P   +A  +       L         +   +    +A 
Sbjct: 115 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL-------ETVQALLPVLCQAH 167

Query: 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 353
                   A+ + G     +      +     A    P    A  + G   +  + + + 
Sbjct: 168 GLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 227

Query: 354 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
           +     A  + P    ++ + G        +     ++ +A    P    A  +     +
Sbjct: 228 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQ 287

Query: 414 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
              ++   +    Q   + P    A  +    
Sbjct: 288 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 319

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  149 bits (378), Expect = 8e-39
 Identities = 32/234 (13%), Positives = 62/234 (26%), Gaps = 16/234 (6%)

Query: 49  KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
           +  ++ A+     ++       L +           V A    G   Q     +      
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 333

Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
            +A  L PQ   A        +    +        +A    P          + +   G 
Sbjct: 334 CQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ-------VVAIASNGG 386

Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
             +     Q  +    +A  + P    A  +       L      L    +A    P   
Sbjct: 387 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQV 446

Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
            A  + G        + + ++  +  LA   N      +  +AL  LG +  L+
Sbjct: 447 VAIASNGGGRPALESIVAQLSRPDPALAALTN------DHLVALACLGGRPALD 494

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  251 bits (644), Expect = 1e-77
 Identities = 63/326 (19%), Positives = 109/326 (33%), Gaps = 20/326 (6%)

Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
               +++  +  + + Y+          P A        + G      G+    I     
Sbjct: 38  NQEAQNQVTVSASEKGYYFHTENPFKDWPGA-------FEEGLKRLKEGDLPVTILFMEA 90

Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
           A+  DP  A A+  LG+  +E      A+   ++    +P   +A   + V Y N    +
Sbjct: 91  AILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ 150

Query: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG---VAYYKKALYYNWHY 299
            A    +  +  +P ++    N   +        K   D +        Y +A + N   
Sbjct: 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM 210

Query: 300 ADAM--YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
            D      LGV +    +F+ AI  +  A    P      N LG    + D  ++AVE Y
Sbjct: 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270

Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA--------YNNLG 409
             AL I+P F +S  NLG+     G    A      A++                  N+ 
Sbjct: 271 TRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIW 330

Query: 410 VLYRDAGSISLAIDAYEQCLKIDPDS 435
              R A S+    + ++     D D 
Sbjct: 331 AALRIALSLMDQPELFQAANLGDLDV 356

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  244 bits (624), Expect = 9e-75
 Identities = 58/326 (17%), Positives = 110/326 (33%), Gaps = 20/326 (6%)

Query: 134 EAAESYHKALSADPSYKPA-AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP 192
            A  +           +    E             +         + YY   +      P
Sbjct: 7   RAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWP 66

Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
             +  G+   +       +   E A L+ P  AEA+  +G+      + ++AI   +RCL
Sbjct: 67  GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126

Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
            + PN   A   +A++ T+                  K  +  N  Y   + N   + G 
Sbjct: 127 ELQPNNLKALMALAVSYTNTS-------HQQDACEALKNWIKQNPKYKYLVKNKKGSPGL 179

Query: 313 MLKFDMAIVFYEL----------AFHFNPHCAEAC--NNLGVIYKDRDNLDKAVECYQMA 360
             +   + V   +          A H N    +      LGV++      ++A++ +  A
Sbjct: 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239

Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
           L+++P      N LG       + + A E   +A+   P +  +  NLG+   + G+   
Sbjct: 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299

Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAM 446
           A+  +   L +   SRN  Q    A+
Sbjct: 300 AVSNFLTALSLQRKSRNQQQVPHPAI 325

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  202 bits (517), Expect = 3e-59
 Identities = 54/321 (16%), Positives = 101/321 (31%), Gaps = 27/321 (8%)

Query: 50  DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
            A                +   E  + +D G+ EA    GI        + A  +    +
Sbjct: 67  GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126

Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG---TS 166
           +L P N  A     + Y +     +A E+    +  +P YK   +              S
Sbjct: 127 ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186

Query: 167 LKLAGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224
              +   +   + Y EA   +           LGV++    +++ A+  +  A   RP  
Sbjct: 187 PVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246

Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
              +  +G    N    E A+  Y R L + P F  ++ N+ I+  +L       G   +
Sbjct: 247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL-------GAYRE 299

Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
            V+ +  AL       +       A    +   + I    L+    P   +A N      
Sbjct: 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA---LSLMDQPELFQAANL----- 351

Query: 345 KDRDNLDKAVECYQMALSIKP 365
                    ++    A ++ P
Sbjct: 352 -------GDLDVLLRAFNLDP 365

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  165 bits (419), Expect = 2e-45
 Identities = 41/251 (16%), Positives = 77/251 (30%), Gaps = 27/251 (10%)

Query: 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVI--------YKNRGDLESAIACYERCLAVS 255
            M+++ A    E            +  M            +N+  + ++   Y       
Sbjct: 2   AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61

Query: 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
                      +            GD+   + + + A+  +   A+A   LG+   E   
Sbjct: 62  FKDWPGAFEEGLKRLKE-------GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENEN 114

Query: 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
              AIV  +      P+  +A   L V Y +  +   A E  +  +   P +   + N  
Sbjct: 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174

Query: 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEA------------YNNLGVLYRDAGSISLAID 423
               +  +M  +             Y EA               LGVL+  +G  + AID
Sbjct: 175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID 234

Query: 424 AYEQCLKIDPD 434
           A+   L + P+
Sbjct: 235 AFNAALTVRPE 245

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  152 bits (387), Expect = 4e-41
 Identities = 39/218 (17%), Positives = 67/218 (30%), Gaps = 4/218 (1%)

Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKVKLEGDINQGVAYYKKALYYNW 297
            + E A A  E         +     MA         + + +  ++     Y       +
Sbjct: 3   MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPF 62

Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
                 +  G+   +     + I+F E A   +P  AEA   LG+   + +N   A+   
Sbjct: 63  KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVAL 122

Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417
           Q  L ++PN  ++L  L V YT       A E ++  I  NP Y     N          
Sbjct: 123 QRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRR 182

Query: 418 ISLAIDAYEQCLKIDPDSRNAGQNR---LLAMNYINEG 452
           +S +         +      A       +        G
Sbjct: 183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  241 bits (617), Expect = 3e-74
 Identities = 47/292 (16%), Positives = 88/292 (30%), Gaps = 22/292 (7%)

Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
           G+       Y         Y       G+   +L     A   +E      P   EA+ +
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
           +G+          AI        + P        +A++ T+         + N  +A  +
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH-------NANAALASLR 113

Query: 291 KALYYNWHYADA---------------MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
             L     Y                  + +    +    ++         A   NP+ A+
Sbjct: 114 AWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ 173

Query: 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395
              +LGV+Y   +N D A    + A+ ++P+ +Q  N LG       +   A +   +A+
Sbjct: 174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233

Query: 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
             NP Y     N+ V Y +     LA     + + +                
Sbjct: 234 DINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREAT 285

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  209 bits (535), Expect = 3e-62
 Identities = 50/327 (15%), Positives = 101/327 (30%), Gaps = 38/327 (11%)

Query: 50  DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
           + +     +       +A   +E V +      EA    G+         LA  + + A 
Sbjct: 23  NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR 82

Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD------- 162
            LDP++   H    + + +E     A  S    L + P Y+           D       
Sbjct: 83  MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ 142

Query: 163 -LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
                       ++     + AL+++P+ A  + +LGV+Y+    YD+A     +A   R
Sbjct: 143 SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR 202

Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
           P  A+ +  +G    N    + A+  Y R L ++P +     NMA++ +++         
Sbjct: 203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM-------SQ 255

Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
            +       +A+Y                   +                       +   
Sbjct: 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW----------------------DFFR 293

Query: 342 VIYKDRDNLDKAVECYQMALSI-KPNF 367
           ++    +  D     Y   +      F
Sbjct: 294 MLLNVMNRPDLVELTYAQNVEPFAKEF 320

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  113 bits (286), Expect = 6e-28
 Identities = 22/152 (14%), Positives = 44/152 (28%)

Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
                   Y    +      E     G+      NL +A   ++      P   ++  +L
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
           G+      K   A   +  A   +P     +  L V + +  + + A+ +    L   P 
Sbjct: 62  GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121

Query: 435 SRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
               G   L A   I++ +            +
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE 153

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  107 bits (269), Expect = 1e-25
 Identities = 35/234 (14%), Positives = 62/234 (26%), Gaps = 52/234 (22%)

Query: 40  GSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR 99
                  +  +  S      + N++ +   L    LE +  + + H   G+   +     
Sbjct: 130 LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS--NN 187

Query: 100 L--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157
              A  +   AV+L P +A      G    +  R  EA ++Y++                
Sbjct: 188 YDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR---------------- 231

Query: 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
                                    AL I+P Y    YN+ V YS + QYD A     +A
Sbjct: 232 -------------------------ALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266

Query: 218 ALERPMYAEAYCNMGVIYKNR--GDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
              +                         +    R     P+         +  
Sbjct: 267 IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR-----PDLVELTYAQNVEP 315

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  240 bits (615), Expect = 2e-73
 Identities = 64/330 (19%), Positives = 115/330 (34%), Gaps = 33/330 (10%)

Query: 139 YHKALSADPSYKPAAECLAIVLTDLGTSLK-----LAGNTQDGIQKYYEALKIDPH---- 189
           + +A SA  S     + L   L ++          L+         Y +  + +      
Sbjct: 3   FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62

Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
             P  +  G+   +      A+  +E A  + P + EA+  +G           AI+   
Sbjct: 63  DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122

Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA------- 302
           RCL + P+ + A   +A++ T+            Q     +  L Y   YA         
Sbjct: 123 RCLELKPDNQTALMALAVSFTNES-------LQRQACEILRDWLRYTPAYAHLVTPAEEG 175

Query: 303 --MYNLGVAYGEM------LKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDK 352
                LG +   +        F      +  A   +P     +    LGV++      DK
Sbjct: 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235

Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
           AV+C+  ALS++PN     N LG       + + A     +A+   P Y  +  NLG+  
Sbjct: 236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295

Query: 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
            + G+   A++ + + L +   SR      
Sbjct: 296 INLGAHREAVEHFLEALNMQRKSRGPRGEG 325

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  226 bits (579), Expect = 4e-68
 Identities = 53/322 (16%), Positives = 100/322 (31%), Gaps = 24/322 (7%)

Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
             + +Y K    +               + G      G+  + +  +  A++ DP +  A
Sbjct: 44  LTSATYDKGYQFEEENPLRD---HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEA 100

Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
           +  LG   +E  Q   A+    +    +P    A   + V + N      A       L 
Sbjct: 101 WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160

Query: 254 VSPNFEIAKNNM--AIALTDLGTKVKLEGDINQG------VAYYKKALYYNWHYADAM-- 303
            +P +               LG   ++ G +            +  A+  +    D    
Sbjct: 161 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220

Query: 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363
             LGV +    ++D A+  +  A    P+     N LG    + +  ++AV  Y+ AL +
Sbjct: 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280

Query: 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-------- 415
           +P + +S  NLG+     G    A E   +A+             G +  +         
Sbjct: 281 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL 340

Query: 416 ---GSISLAIDAYEQCLKIDPD 434
              G       A  + L     
Sbjct: 341 SMLGQSDAYGAADARDLSTLLT 362

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  219 bits (559), Expect = 3e-65
 Identities = 57/325 (17%), Positives = 103/325 (31%), Gaps = 40/325 (12%)

Query: 49  KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108
                            +A+ L+E  +++D  ++EA    G          LA  +    
Sbjct: 65  PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC 124

Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL--TDLGTS 166
           ++L P N  A     + + +E    +A E     L   P+Y               LG S
Sbjct: 125 LELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184

Query: 167 LKLAGNTQDG------IQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAA 218
            ++ G+           + +  A+++DP          LGV+++   +YD A+ C+  A 
Sbjct: 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244

Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
             RP     +  +G    N    E A+A Y R L + P +  ++ N+ I+  +L      
Sbjct: 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL------ 298

Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
            G   + V ++ +AL             G                              +
Sbjct: 299 -GAHREAVEHFLEALNMQRKSRGPRGEGGAMS-----------------------ENIWS 334

Query: 339 NLGVIYKDRDNLDKAVECYQMALSI 363
            L +        D         LS 
Sbjct: 335 TLRLALSMLGQSDAYGAADARDLST 359

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  125 bits (316), Expect = 1e-31
 Identities = 26/194 (13%), Positives = 51/194 (26%), Gaps = 16/194 (8%)

Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKF------------DMAIVFYELAFHFNPHC--- 333
           +++A        D    L     EM K             D+    Y+  + F       
Sbjct: 3   FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62

Query: 334 -AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392
                   G+      +L  AV  ++ A+   P   ++   LG       +   A   + 
Sbjct: 63  DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122

Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452
           + +   P    A   L V + +      A +     L+  P   +              G
Sbjct: 123 RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 182

Query: 453 HDDKLFEAHRDWGK 466
              ++  +      
Sbjct: 183 PSKRILGSLLSDSL 196

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  232 bits (595), Expect = 5e-71
 Identities = 42/333 (12%), Positives = 102/333 (30%), Gaps = 24/333 (7%)

Query: 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
              E+V    +N          +          +     +  DP +          L +L
Sbjct: 10  VIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL 69

Query: 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL-MQYDTALGCYEKAALERP 222
                      +     ++ + + P    +++ +G  Y  +  + + A     KA     
Sbjct: 70  N-------KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122

Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
            Y  A+   G  +    + + A+A Y     +     +    + +             + 
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN-------NS 175

Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--------- 333
                ++ +AL         M+ +GV   +  ++  A  ++  A                
Sbjct: 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW 235

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
               NNLG + +      +A++ ++ AL + P  + + + +G ++++ G  + A +    
Sbjct: 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295

Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426
           A+        +   LG         S A    +
Sbjct: 296 ALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGAD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  230 bits (589), Expect = 4e-70
 Identities = 50/298 (16%), Positives = 92/298 (30%), Gaps = 17/298 (5%)

Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
           V+  L        + +   +     ++ DP +A           EL + +       K  
Sbjct: 24  VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83

Query: 219 LERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277
              P    ++  +G  Y   G   E A     +   +   +  A      +         
Sbjct: 84  DLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVES---- 139

Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
              + +Q +A Y  A          M  +G+ YG      +A  F+  A    P      
Sbjct: 140 ---EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVM 196

Query: 338 NNLGVIYKDRDNLDKAVECYQMALSI---------KPNFSQSLNNLGVVYTVQGKMDAAA 388
           + +GV+         A + +  AL              +   LNNLG V     K   A 
Sbjct: 197 HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256

Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
           +   +A+   P  A  Y+ +G ++   G+   A+D +   L +  D   +       +
Sbjct: 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  230 bits (588), Expect = 7e-70
 Identities = 50/324 (15%), Positives = 114/324 (35%), Gaps = 24/324 (7%)

Query: 75  LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134
           ++    N++  +            ++ +   S  ++ DP +A           +  +  E
Sbjct: 15  VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANE 74

Query: 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE-ALKIDPHYAPA 193
                HK +   PS         +    +G    + G+  +  ++Y   A  ++  Y PA
Sbjct: 75  LFYLSHKLVDLYPSN-------PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA 127

Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
           +   G  ++   ++D A+  Y  AA            +G+ Y    + + A   + + L+
Sbjct: 128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187

Query: 254 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL---------YYNWHYADAMY 304
           ++P      + + +            G+      ++  AL              +   + 
Sbjct: 188 IAPEDPFVMHEVGVVAFQN-------GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240

Query: 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
           NLG    ++ K+  A+ ++  A    P  A   + +G I+    N + AV+ +  AL ++
Sbjct: 241 NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300

Query: 365 PNFSQSLNNLGVVYTVQGKMDAAA 388
            + + S+  LG    +      A 
Sbjct: 301 RDDTFSVTMLGHCIEMYIGDSEAY 324

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  201 bits (514), Expect = 3e-59
 Identities = 43/270 (15%), Positives = 80/270 (29%), Gaps = 15/270 (5%)

Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
               E++           +L   +     +            + P +A            
Sbjct: 9   TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE 68

Query: 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297
                       + + + P+  ++   +      +G K            Y  KA     
Sbjct: 69  LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHK------NEHARRYLSKATTLEK 122

Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
            Y  A    G ++    + D A+  Y  A      C      +G+ Y   +N   A   +
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182

Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI---------AANPTYAEAYNNL 408
             ALSI P     ++ +GVV    G+   A +    A+              +    NNL
Sbjct: 183 SQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL 242

Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
           G + R     + A+D + Q L + P + + 
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNAST 272

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  186 bits (474), Expect = 1e-53
 Identities = 44/284 (15%), Positives = 88/284 (30%), Gaps = 28/284 (9%)

Query: 54  YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL---AFDSFSEAVK 110
           +   L   NK  +   L   +++    N  +    G    M   G     A    S+A  
Sbjct: 62  HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV--GHKNEHARRYLSKATT 119

Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
           L+     A    G  +  E    +A  +Y  A             + +       + KLA
Sbjct: 120 LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN-NSKLA 178

Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA---------ALER 221
                  + + +AL I P      + +GVV  +  ++ TA   +  A          +  
Sbjct: 179 ------ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232

Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
             +     N+G + +       A+  + + L + P      + +    + +G       +
Sbjct: 233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG-------N 285

Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
               V Y+  AL        ++  LG      +    A +  ++
Sbjct: 286 FENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGADI 329

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  176 bits (449), Expect = 5e-50
 Identities = 33/251 (13%), Positives = 65/251 (25%), Gaps = 16/251 (6%)

Query: 212 GCYEKAALER--------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
           G Y K +               +   ++   +    D +         +   P       
Sbjct: 1   GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60

Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK-FDMAIVF 322
                L +L    +L            K +        + + +G  Y  +    + A  +
Sbjct: 61  VHIGTLVELNKANEL-------FYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRY 113

Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
              A         A    G  +      D+A+  Y  A  +       +  +G+ Y +  
Sbjct: 114 LSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173

Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
               A     +A++  P      + +GV+    G    A   +   L+      N     
Sbjct: 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233

Query: 443 LLAMNYINEGH 453
                  N GH
Sbjct: 234 KWEPLLNNLGH 244

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  159 bits (405), Expect = 7e-44
 Identities = 41/238 (17%), Positives = 82/238 (34%), Gaps = 20/238 (8%)

Query: 49  KDALSYANI----LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
            + +S+  +    L   +K   A          +     A I  G    +++    A  +
Sbjct: 88  SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAA 147

Query: 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
           +  A +L         + G+ Y        A   + +ALS  P           V+ ++G
Sbjct: 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-------PFVMHEVG 200

Query: 165 TSLKLAGNTQDGIQKYYEALKI---------DPHYAPAYYNLGVVYSELMQYDTALGCYE 215
                 G  +   + + +AL+             + P   NLG V  +L +Y  AL  + 
Sbjct: 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260

Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
           +A +  P  A  Y  +G I+   G+ E+A+  +   L +  +   +   +   +    
Sbjct: 261 QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYI 318

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  233 bits (596), Expect = 1e-70
 Identities = 55/372 (14%), Positives = 116/372 (31%), Gaps = 41/372 (11%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
              L +  +  DAL+ +   ++ D  N  A+  +          + A    ++ + L   
Sbjct: 10  GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD 69

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT--------DLGTS 166
              A    G L   +G+L EA + + K L ++PS +   E  + ++              
Sbjct: 70  FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD 129

Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
                +    I    + L++    A         + +  +   A+   + A+  +    E
Sbjct: 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189

Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286
           A+  +  +Y   GD E +++    CL +  + +    +            KL   I    
Sbjct: 190 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK-------KLNKLIESAE 242

Query: 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGV 342
              +                        ++  A   YE      P  AE    +   +  
Sbjct: 243 ELIRDG----------------------RYTDATSKYESVMKTEPSVAEYTVRSKERICH 280

Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
            +   +   +A+      L ++P+   +L +    Y ++   D A +  E A   N    
Sbjct: 281 CFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ 340

Query: 403 EAYNNLGVLYRD 414
           +    L    R 
Sbjct: 341 QIREGLEKAQRL 352

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  226 bits (579), Expect = 3e-68
 Identities = 46/362 (12%), Positives = 100/362 (27%), Gaps = 45/362 (12%)

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
           +   H   G      G+L +A   +H A+  DP          I      T     G ++
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN-------YIAYYRRATVFLAMGKSK 54

Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
             +    + + +   +  A    G +  +  + D A   ++K     P   E       +
Sbjct: 55  AALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL 114

Query: 235 YK---------------NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
            K               +  D  +AI   ++ L V       +   A      G      
Sbjct: 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEG------ 168

Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
            +  + ++  K A        +A Y +   Y ++   ++++         +        +
Sbjct: 169 -EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227

Query: 340 L------------GVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGK 383
                                    A   Y+  +  +P+      +S   +   ++   K
Sbjct: 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287

Query: 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443
              A  +  + +   P    A  +    Y        AI  YE   + + + +   +   
Sbjct: 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347

Query: 444 LA 445
            A
Sbjct: 348 KA 349

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  167 bits (424), Expect = 3e-46
 Identities = 44/243 (18%), Positives = 72/243 (29%), Gaps = 9/243 (3%)

Query: 40  GSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR 99
              +K  E +   S A        +  A+   + +LE    + E    +  C   +   R
Sbjct: 112 SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR 171

Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
            A      A KL   N  A      LY   G    +     + L  D  +K        V
Sbjct: 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231

Query: 160 -----LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTA 210
                L +    L   G   D   KY   +K +P  A     +   +   +S+  +   A
Sbjct: 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291

Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270
           +    +     P    A  +    Y      + AI  YE     + N +  +  +  A  
Sbjct: 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351

Query: 271 DLG 273
            L 
Sbjct: 352 LLK 354

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  114 bits (287), Expect = 1e-27
 Identities = 26/174 (14%), Positives = 55/174 (31%), Gaps = 18/174 (10%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
            +    LG       +   A+  +  A   +P    A      ++        A+     
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-------- 411
            +++K +F+ +    G +   QGK+D A +  +K + +NP+  E       L        
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122

Query: 412 -------YRDAGSISLAIDAYEQCLKIDPDSRNAGQNR---LLAMNYINEGHDD 455
                    D    + AI   ++ L++        + R    +      +   D
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 176

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  108 bits (271), Expect = 1e-25
 Identities = 25/133 (18%), Positives = 41/133 (30%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
            E    LG        L  A+  +  A+   P+   +      V+   GK  AA   + K
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
            IA    +  A    G L    G +  A D +++ LK +P  +   +     +       
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122

Query: 454 DDKLFEAHRDWGK 466
                    D   
Sbjct: 123 LRSQALDAFDGAD 135

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 84.2 bits (209), Expect = 1e-17
 Identities = 24/169 (14%), Positives = 45/169 (26%), Gaps = 23/169 (13%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAH------------IGKGICLQMQNMGRLAF 102
           + +         +L+     L+ D  +                I     L        A 
Sbjct: 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254

Query: 103 DSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
             +   +K +P  A     +       +  + + VEA     + L  +P    A      
Sbjct: 255 SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNA------ 308

Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207
            L D   +  +     + IQ Y  A + + +       L      L Q 
Sbjct: 309 -LKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  238 bits (609), Expect = 1e-70
 Identities = 55/403 (13%), Positives = 118/403 (29%), Gaps = 21/403 (5%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
            N   +   F +A+  Y+  +E D      +     C           +  ++A+++ P 
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
           ++ A        +  G   +A       LS +  +  A   +  +L        +    +
Sbjct: 92  HSKALLRRASANESLGNFTDAMFDL-SVLSLNGDFDGA--SIEPMLERNLNKQAMKVLNE 148

Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELM--------QYDTALGCYEKAALERPMYAE 226
           +  +      ++ P         G+  S L          YDTA      A        +
Sbjct: 149 NLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208

Query: 227 AYCNM--GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
               +   ++ K+     S ++       +  N  +A     I             ++  
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN-------NLLD 261

Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
                ++++  +    ++   L +   +         F++ A   NP       + G +Y
Sbjct: 262 AQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY 320

Query: 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404
               +   A E +Q A S+ P        L  +   QGK   +     +     PT  E 
Sbjct: 321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV 380

Query: 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
                 +  D G    AI  Y+   +++             + 
Sbjct: 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  238 bits (609), Expect = 1e-70
 Identities = 55/457 (12%), Positives = 114/457 (24%), Gaps = 68/457 (14%)

Query: 49  KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
            + + Y   +    S       +      LE    + +A + +    +       A    
Sbjct: 57  NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116

Query: 106 SEAVKL-DPQNACAHTHC-----------------------GILYKDEGRLVEAAESYHK 141
           S      D   A                               +      L      +  
Sbjct: 117 SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176

Query: 142 ALSADPSYKPAAECLAIVLTD-----------------LGTSLKLAGNTQDGIQKYYEAL 184
            L        +    A  L                        K        +       
Sbjct: 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236

Query: 185 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
            +  + A A    G+ +        A    +++    P    +Y  + +   ++ + +  
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQEF 295

Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304
              +++ + ++P +     +       L        D       ++KA   N        
Sbjct: 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQ-------DYKNAKEDFQKAQSLNPENVYPYI 348

Query: 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
            L     +  KF  +  F+       P   E       I  DR + D A++ Y +A  ++
Sbjct: 349 QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408

Query: 365 PNFSQSLNNLGVVYT----------------VQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
               +    +G +                   + K +AA +++ KA   +P   +A   L
Sbjct: 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468

Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
             L      I  AI+ +E    +        Q    A
Sbjct: 469 AQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFA 505

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  237 bits (607), Expect = 3e-70
 Identities = 66/381 (17%), Positives = 128/381 (33%), Gaps = 42/381 (11%)

Query: 56  NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDP 113
           + + + + +  A AL    L++     +        L  ++         + +    L  
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRE 240

Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
             A A  + GI +  +  L++A     ++++  P+              L  +L    N+
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN--------SYIFLALTLADKENS 292

Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
           Q+  + + +A+ ++P Y P YY+ G +Y  L  Y  A   ++KA    P     Y  +  
Sbjct: 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLAC 352

Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
           +   +G    + A +       P         A  LTD G       D +  +  Y  A 
Sbjct: 353 LLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG-------DFDTAIKQYDIAK 405

Query: 294 YYNWHYADAMYNLGVAYGEML----------------KFDMAIVFYELAFHFNPHCAEAC 337
                       +G   G+                  KF+ AI     A   +P   +A 
Sbjct: 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAK 465

Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
             L  +    + +D+A+E ++ +  +     + L              A A  I+K + A
Sbjct: 466 IGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT---------FAEAAKIQKRLRA 516

Query: 398 NPTYAEAYNNLGVLYRDAGSI 418
           +P  +         YR  G +
Sbjct: 517 DPIISAKMELTLARYRAKGML 537

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  209 bits (535), Expect = 5e-60
 Identities = 58/394 (14%), Positives = 116/394 (29%), Gaps = 39/394 (9%)

Query: 63  KFVDALALYEIVLEKD----SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118
             ++       +                 +G           A   +  A++LDP     
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178
           +++    Y   G L +  E   KAL   P +  A    A     L       GN  D + 
Sbjct: 62  YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL-------GNFTDAM- 113

Query: 179 KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238
                L ++  +  A         E      A+    +        ++       +  + 
Sbjct: 114 FDLSVLSLNGDFDGASIEP---MLERNLNKQAMKVLNENL------SKDEGRGSQVLPSN 164

Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV-----------------KLEGD 281
             L S    ++  L VS     +  + A AL     +                  K    
Sbjct: 165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDM 224

Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
            +  ++          + A A+   G+ +        A V  + + + +P    +   L 
Sbjct: 225 YHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLA 283

Query: 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401
           +   D++N  +  + +Q A+ + P +  +  + G +Y +      A E  +KA + NP  
Sbjct: 284 LTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343

Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
              Y  L  L    G  + +   + +     P  
Sbjct: 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  209 bits (533), Expect = 8e-60
 Identities = 53/355 (14%), Positives = 114/355 (32%), Gaps = 47/355 (13%)

Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
           G  +       +     PS + A    A+ L + G     A N  + I+ Y  A+++DP+
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQA---YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN 57

Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
               Y N+   Y      +  +    KA   +P +++A        ++ G+   A+    
Sbjct: 58  EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117

Query: 250 RCLAVSPNFEIA-------------------------KNNMAIALTDLGT---------- 274
             L+++ +F+ A                         +   +  L    +          
Sbjct: 118 -VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176

Query: 275 -----KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE--MLKFDMAIVFYELAF 327
                 V    + +   A    AL   +   D  Y +           +   +    +  
Sbjct: 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236

Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
               + A A    G+ +  ++NL  A    Q ++++ P    S   L +    +      
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF 295

Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
            +  +KA+  NP Y   Y + G +Y        A + +++   ++P++       
Sbjct: 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  111 bits (279), Expect = 6e-26
 Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 5/170 (2%)

Query: 315 KFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370
                          +P      A    N G  +    N ++A++ YQ A+ + PN    
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430
            +N+   Y   G ++   E   KA+   P +++A           G+ + A+      L 
Sbjct: 62  YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSV-LS 120

Query: 431 IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
           ++ D   A    +L  N   +          +D G+    L S  +    
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF 170

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  105 bits (263), Expect = 7e-24
 Identities = 31/216 (14%), Positives = 64/216 (29%), Gaps = 30/216 (13%)

Query: 280 GDINQGVAYYKKAL----YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
           G    G     +           YA  + N G  +     F+ AI +Y+ A   +P+   
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395
             +N+   Y    +L+K +E    AL IKP+ S++L          G    A   +   +
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVL 119

Query: 396 AANPTYAEA-------------------------YNNLGVLYRDAGSISLAIDAYEQCLK 430
           + N  +  A                               +     S++     ++  L+
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179

Query: 431 IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
           +   + ++  +   A+            +       
Sbjct: 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAN 215

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 21/121 (17%), Positives = 30/121 (24%), Gaps = 9/121 (7%)

Query: 44  KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFD 103
           K        S         KF  A+ L     E D  + +A IG             A +
Sbjct: 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483

Query: 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
            F ++  L              + +  +         K L ADP      E         
Sbjct: 484 LFEDSAILARTMDEKLQ--ATTFAEAAK-------IQKRLRADPIISAKMELTLARYRAK 534

Query: 164 G 164
           G
Sbjct: 535 G 535

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  231 bits (592), Expect = 4e-69
 Identities = 62/418 (14%), Positives = 129/418 (30%), Gaps = 38/418 (9%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
              L +  +  DAL+ +   ++ D  N  A+  +          + A    ++ ++L   
Sbjct: 33  GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT--------DLGTS 166
              A    G L   +G+L EA + + K L ++PS     E  + ++             +
Sbjct: 93  FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALN 152

Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
              +G+    I    + L++    A         + +  +   A+   + A+  +    E
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212

Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG- 285
           A+  +  +Y   GD E +++    CL +  + +    +              E  I  G 
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR 272

Query: 286 ----VAYYKKALYYN----WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
                + Y+  +        +   +   +   + +  K   AI          P    A 
Sbjct: 273 YTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332

Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
            +    Y   +  D+A++ Y+ A     N  Q    L     +  +           +  
Sbjct: 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392

Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAY-EQCLKIDPDSRNAGQNRLLA---MNYINE 451
           N    E                  I AY +  L+  PD+    + +  A      I  
Sbjct: 393 NAKKQE-----------------IIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAA 433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  209 bits (534), Expect = 8e-61
 Identities = 55/407 (13%), Positives = 112/407 (27%), Gaps = 60/407 (14%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
              L + N +  ++A           +VE H+  G  L        A   F  AV  DP 
Sbjct: 10  GVDLGTENLYFQSMA-----------DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD 58

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
           N  A+     ++   G+   A     K +     +  A      +L          G   
Sbjct: 59  NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ-------GKLD 111

Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
           +    + + LK +P                              L +    +   +  + 
Sbjct: 112 EAEDDFKKVLKSNPSENEEKEAQS-------------------QLIKSDEMQRLRSQALN 152

Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
               GD  +AIA  ++ L V       +   A             G+  + ++  K A  
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE-------GEPRKAISDLKAASK 205

Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK--------- 345
                 +A Y +   Y ++   ++++         +        +   + K         
Sbjct: 206 LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 265

Query: 346 ---DRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
                     A   Y+  +  +P+      +S   +   ++   K   A  +  + +   
Sbjct: 266 ELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325

Query: 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
           P    A  +    Y        AI  YE   + + + +   +    A
Sbjct: 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  181 bits (461), Expect = 2e-50
 Identities = 46/333 (13%), Positives = 99/333 (29%), Gaps = 56/333 (16%)

Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
            H   G+    E    ++     K L                  +LG  L  AG   D +
Sbjct: 5   HHHSSGVDLGTENLYFQSMADVEKHL------------------ELGKKLLAAGQLADAL 46

Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
            +++ A+  DP    AYY    V+  + +   AL    K    +  +  A    G +   
Sbjct: 47  SQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106

Query: 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297
           +G L+ A   +++ L  +P+    K                            ++     
Sbjct: 107 QGKLDEAEDDFKKVLKSNPSENEEKEA--------------------------QSQLIKS 140

Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
                + +  +       +  AI F +         AE        +       KA+   
Sbjct: 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 200

Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR---- 413
           + A  +K + +++   +  +Y   G  + +   + + +  +  +   + +   + +    
Sbjct: 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260

Query: 414 --------DAGSISLAIDAYEQCLKIDPDSRNA 438
                     G  + A   YE  +K +P     
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEY 293

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  172 bits (437), Expect = 4e-47
 Identities = 38/268 (14%), Positives = 78/268 (29%), Gaps = 33/268 (12%)

Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
           +   +++ GV       Y  ++              E +  +G      G L  A++ + 
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMADV-----------EKHLELGKKLLAAGQLADALSQFH 50

Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
             +   P+  IA    A     +       G     +    K +     +  A    G  
Sbjct: 51  AAVDGDPDNYIAYYRRATVFLAM-------GKSKAALPDLTKVIQLKMDFTAARLQRGHL 103

Query: 310 YGEMLKFDMAIVFYELAFHFNPHCAEACN---------------NLGVIYKDRDNLDKAV 354
             +  K D A   ++     NP   E                  +  +      +   A+
Sbjct: 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163

Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
                 L +    ++        +  +G+   A   ++ A        EA+  +  LY  
Sbjct: 164 AFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ 223

Query: 415 AGSISLAIDAYEQCLKIDPDSRNAGQNR 442
            G   L++    +CLK+D D +    + 
Sbjct: 224 LGDHELSLSEVRECLKLDQDHKRCFAHY 251

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  171 bits (435), Expect = 7e-47
 Identities = 60/411 (14%), Positives = 117/411 (28%), Gaps = 71/411 (17%)

Query: 49  KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
            + ++Y   A +  +  K   AL     V++       A + +G  L  Q     A D F
Sbjct: 58  DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDF 117

Query: 106 SEAVKLDPQNACAHTHCGILYK---------------DEGRLVEAAESYHKALSADPSYK 150
            + +K +P           L K                 G    A     K L       
Sbjct: 118 KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA 177

Query: 151 PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210
              E  A      G         +  I     A K+      A+Y +  +Y +L  ++ +
Sbjct: 178 ELRELRAECFIKEG-------EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230

Query: 211 LGCYEKAALERPMYAEAYCNMGVIYK------------NRGDLESAIACYERCLAVSPNF 258
           L    +       +   + +   + K              G    A + YE  +   P+ 
Sbjct: 231 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI 290

Query: 259 E----IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 314
                 +K  +    +             + +    + L       +A+ +   AY    
Sbjct: 291 AEYTVRSKERICHCFSKDE-------KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE 343

Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-----------------DNLDKAVECY 357
            +D AI  YE A   N +  +    L    +                       + ++ Y
Sbjct: 344 MYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAY 403

Query: 358 -QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
            ++AL   P+  Q+             + AA     K + ++P   + +++
Sbjct: 404 RKLALQWHPDNFQNEEEKKKAEKKFIDIAAA-----KEVLSDPEMRKKFDD 449

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  167 bits (426), Expect = 1e-45
 Identities = 60/319 (18%), Positives = 95/319 (29%), Gaps = 20/319 (6%)

Query: 22  FLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN 81
           F K  +S P  +    A    +K  E +   S A        +  A+A  + +LE    +
Sbjct: 117 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD 176

Query: 82  VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHK 141
            E    +  C   +   R A      A KL   N  A      LY   G    +     +
Sbjct: 177 AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236

Query: 142 ALSADPSYKPAAECLAIV-----LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP---- 192
            L  D  +K        V     L +    L   G   D   KY   +K +P  A     
Sbjct: 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR 296

Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
           +   +   +S+  +   A+    +     P    A  +    Y      + AI  YE   
Sbjct: 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ 356

Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV-----------AYYKKALYYNWHYAD 301
             + N +  +  +  A   L    K +     GV           AY K AL ++     
Sbjct: 357 EHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416

Query: 302 AMYNLGVAYGEMLKFDMAI 320
                  A  + +    A 
Sbjct: 417 NEEEKKKAEKKFIDIAAAK 435

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  137 bits (346), Expect = 6e-35
 Identities = 34/244 (13%), Positives = 67/244 (27%), Gaps = 33/244 (13%)

Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
           M+   + + GV          ++A  E               +   L          G +
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSMADVE-----------KHLELGKKLLAA-------GQL 42

Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
              ++ +  A+  +     A Y     +  M K   A+               A    G 
Sbjct: 43  ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102

Query: 343 IYKDRDNLDKAVECYQMALSIKPNFS---------------QSLNNLGVVYTVQGKMDAA 387
           +   +  LD+A + ++  L   P+ +               Q L +  +     G   AA
Sbjct: 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162

Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
              ++K +      AE        +   G    AI   +   K+  D+  A         
Sbjct: 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222

Query: 448 YINE 451
            + +
Sbjct: 223 QLGD 226

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  112 bits (283), Expect = 1e-26
 Identities = 27/168 (16%), Positives = 49/168 (29%), Gaps = 11/168 (6%)

Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
           +    ++ GV  G    +  ++              E    LG        L  A+  + 
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSM-----------ADVEKHLELGKKLLAAGQLADALSQFH 50

Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418
            A+   P+   +      V+   GK  AA   + K I     +  A    G L    G +
Sbjct: 51  AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKL 110

Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
             A D +++ LK +P      + +   +                  G 
Sbjct: 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  230 bits (589), Expect = 6e-68
 Identities = 63/421 (14%), Positives = 125/421 (29%), Gaps = 38/421 (9%)

Query: 55  ANILRSRNKFVDALALYE---IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
           A+      KF DA+       +  + +  ++E  + + +  Q  +  +  F     A   
Sbjct: 80  ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT 139

Query: 112 DPQNACAHTHCGIL-------------YKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
             + +                      +    +      +Y ++  AD         L  
Sbjct: 140 PTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK 199

Query: 159 VLTD-----LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 213
              +       +  K A   ++ + K  E  K+    A +  + G+          A   
Sbjct: 200 RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHED 259

Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
            +KA +E      +Y  M +I  +R D       +++ L +  N      +       L 
Sbjct: 260 IKKA-IELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318

Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
                  + +Q    + KA   +         L        KFD     +  A    P  
Sbjct: 319 -------NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA 371

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT---------VQGKM 384
            E  N    I  D+++ DKA++ Y +A+ ++         +  +                
Sbjct: 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431

Query: 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444
             A  ++EKA   +P   +A   L  +      I  AI  +E+   +        Q    
Sbjct: 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491

Query: 445 A 445
           A
Sbjct: 492 A 492

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  228 bits (582), Expect = 6e-67
 Identities = 57/418 (13%), Positives = 115/418 (27%), Gaps = 38/418 (9%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSE-AVKLDP 113
           +    S       + +    LE      +  + +    +       A    S  ++  D 
Sbjct: 46  SACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF 105

Query: 114 QNACAHTHC--GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL-- 169
            +A         +  +   +L E       A +                 +   S+    
Sbjct: 106 NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165

Query: 170 ----AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE------------LMQYDTALGC 213
                   +     Y E+ + D        NL     E               ++  L  
Sbjct: 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225

Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
             +    +   A +  + G+    + D   A    ++ + + P    +   MA+ + D  
Sbjct: 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMADRN 284

Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
                  D  +   Y+ KAL  + + +   Y+ G     +  +D A   ++ A   +P  
Sbjct: 285 -------DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
                 L  +    +  D     +  A    P   +  N    + T +   D A +  + 
Sbjct: 338 IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDL 397

Query: 394 AIAANPTYAEAYNNLGVLYRDA---------GSISLAIDAYEQCLKIDPDSRNAGQNR 442
           AI         Y  +  L   A          +   A +  E+  K+DP S  A    
Sbjct: 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  225 bits (576), Expect = 4e-66
 Identities = 53/398 (13%), Positives = 116/398 (29%), Gaps = 33/398 (8%)

Query: 51  ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF----- 105
            L+   + + + KF D         E  +   +    K   L         F  F     
Sbjct: 117 NLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176

Query: 106 ----SEAVKLDPQNACA-----HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156
                E+ + D +                 K +    +AA  + + L  +   +   E L
Sbjct: 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236

Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
           AI L   G    L  +     +   +A+++ P    +Y  + ++ ++          ++K
Sbjct: 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMADRNDSTEYYNYFDK 295

Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
           A       +  Y + G +     + + A   +++   + P        +A          
Sbjct: 296 ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYREN--- 352

Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
                 +     + +A        +          +   FD A+  Y+LA          
Sbjct: 353 ----KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408

Query: 337 CNNLGVIY---------KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
              +  +             +N  +A    + A  + P   Q+   L  +   Q  +D A
Sbjct: 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA 468

Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425
             + E++     T  E    +   + +A  +   I + 
Sbjct: 469 ITLFEESADLARTMEEKLQAIT--FAEAAKVQQRIRSD 504

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  217 bits (555), Expect = 4e-63
 Identities = 54/420 (12%), Positives = 122/420 (29%), Gaps = 27/420 (6%)

Query: 49  KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
           K AL+     N      K+ DA+  Y   LE    +   +     C       +   +  
Sbjct: 4   KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMS 62

Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
           ++A++L P  +          +  G+  +A       LS +  +  A+      + +   
Sbjct: 63  TKALELKPDYSKVLLRRASANEGLGKFADAMFDL-SVLSLNGDFNDAS---IEPMLERNL 118

Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL-------------GVVYSELMQYDTALG 212
           + +     ++       A       +                      +  + + +    
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178

Query: 213 CYEKAALERPMYAEAYCNM-----GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
            Y+++            N+         K       A   +E  L  +   E  K  +AI
Sbjct: 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238

Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327
           +L   G    L+ D        KKA+       ++   + +   +         +++ A 
Sbjct: 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDSTEYYNYFDKAL 297

Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
             + + +    + G +     N D+A + +  A  + P        L  +   + K D  
Sbjct: 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDC 357

Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
             +  +A    P   E  N    +  D      A+  Y+  ++++             + 
Sbjct: 358 ETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  203 bits (518), Expect = 6e-58
 Identities = 58/368 (15%), Positives = 113/368 (30%), Gaps = 45/368 (12%)

Query: 60  SRNKFVDALALYEIVLEKDSGNVEAHIG------------KGICLQMQNMGRLAFDSFSE 107
              K     A Y+   E D   +                      +   +     D  +E
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228

Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
             KL  + A +  H GI    +   + A E   KA+   P               +   +
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN--------SYIYMALIM 280

Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
               ++ +    + +ALK+D + +  YY+ G +   L  YD A   ++KA    P     
Sbjct: 281 ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP 340

Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287
           Y  +  +       +     +       P      N  A  LTD         D ++ + 
Sbjct: 341 YIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKN-------DFDKALK 393

Query: 288 YYKKALYYNWHYADAMYNLGVAYGEML---------KFDMAIVFYELAFHFNPHCAEACN 338
            Y  A+            +    G+            F  A    E A   +P   +A  
Sbjct: 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKI 453

Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
            L  +   ++++D+A+  ++ +  +     + L  +           A A  +++ I ++
Sbjct: 454 GLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT---------FAEAAKVQQRIRSD 504

Query: 399 PTYAEAYN 406
           P  A+   
Sbjct: 505 PVLAKKIQ 512

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  187 bits (477), Expect = 4e-52
 Identities = 40/351 (11%), Positives = 100/351 (28%), Gaps = 30/351 (8%)

Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
            + A A    G  +    +  +A + Y+ AL              +  ++L       G+
Sbjct: 3   DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED--------PVFYSNLSACYVSVGD 54

Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE---RPMYAEAYC 229
            +  ++   +AL++ P Y+            L ++  A+      +L         E   
Sbjct: 55  LKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114

Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL------EGDIN 283
              +  +    L+      +   A                 +    V             
Sbjct: 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174

Query: 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEML------------KFDMAIVFYELAFHFNP 331
              A Y ++   +    + + NL     E               F+  +           
Sbjct: 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234

Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391
             A +  + G+    +++   A E  + A+ + P    S   + ++   +          
Sbjct: 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYF 293

Query: 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
           +KA+  +   +  Y + G +     +   A   +++  ++DP++       
Sbjct: 294 DKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  107 bits (268), Expect = 2e-24
 Identities = 39/254 (15%), Positives = 79/254 (31%), Gaps = 31/254 (12%)

Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
           E+  YA A  + G  +      + AI  Y   L +  +  +  +N++     +       
Sbjct: 1   EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNLSACYVSV------- 52

Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE---LAFHFNPHCAEA 336
           GD+ + V    KAL     Y+  +     A   + KF  A+       L   FN    E 
Sbjct: 53  GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEP 112

Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-------------SLNNLGVVYTVQGK 383
                +  +    L +       A +     S                      +    K
Sbjct: 113 MLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172

Query: 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK-----IDPDSRNA 438
            +      +++  A+       +NL    R   S   A +++ +  +     +D ++ + 
Sbjct: 173 PELTFANYDESNEADKELMNGLSNLY--KRSPESYDKADESFTKAARLFEEQLDKNNEDE 230

Query: 439 GQNRLLAMNYINEG 452
                LA++  + G
Sbjct: 231 KLKEKLAISLEHTG 244

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  215 bits (550), Expect = 1e-65
 Identities = 48/283 (16%), Positives = 94/283 (33%), Gaps = 44/283 (15%)

Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
            +   +H +    P     +   ++            G+ +   + + +A++ +   A  
Sbjct: 3   SSHHHHHHSSGLVPR---GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP 59

Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
           Y N   + S + + + AL  Y+KA       A AY   G +Y  +   + A   +E+ L 
Sbjct: 60  YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119

Query: 254 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 313
                                                          D  Y LG    ++
Sbjct: 120 AGME-----------------------------------------NGDLFYMLGTVLVKL 138

Query: 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 373
            +  +A+ + + A   N +  EA    G+   +   LD+A+  +       P  + +  N
Sbjct: 139 EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYN 198

Query: 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
            GV Y  +   + A EM++KAI   P +  A +   +L     
Sbjct: 199 AGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  210 bits (538), Expect = 1e-63
 Identities = 47/248 (18%), Positives = 93/248 (37%), Gaps = 11/248 (4%)

Query: 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNR----GDLESAIACYERCLAVSPNFEIAKN 263
            ++   +  ++   P  +      G     R    GD E A   + + +  +    I   
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323
           N A  L+ +        ++ + +A+Y KAL  +   A A Y  G  Y     +  A   +
Sbjct: 62  NFANLLSSVN-------ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMF 114

Query: 324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383
           E A        +    LG +    +    A+   Q A+ +  N +++    G+    +G 
Sbjct: 115 EKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM 174

Query: 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443
           +D A          +P +A+A+ N GV Y    +   A++  ++ + I PD   A   + 
Sbjct: 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234

Query: 444 LAMNYINE 451
           L  ++ + 
Sbjct: 235 LLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  195 bits (499), Expect = 4e-58
 Identities = 51/287 (17%), Positives = 97/287 (33%), Gaps = 52/287 (18%)

Query: 101 AFDSFSEAVKLDPQNACAHTHCG----ILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156
           +      +  L P+ +   +  G        + G   +AAE++ KA+  +          
Sbjct: 4   SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED------- 56

Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
           AI   +    L      +  +  Y +AL++D   A AYY  G VY     Y  A   +EK
Sbjct: 57  AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116

Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
           A        + +  +G +       + A+   +R + ++ N                   
Sbjct: 117 ALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN------------------- 157

Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
                                   +A +  G+        D A+  +      +P  A+A
Sbjct: 158 ----------------------DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195

Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383
             N GV Y  ++N +KA+E    A+ I+P+   +L+   ++      
Sbjct: 196 FYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  177 bits (451), Expect = 3e-51
 Identities = 35/202 (17%), Positives = 69/202 (34%), Gaps = 3/202 (1%)

Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
           + S+   +     + P      +           +    GD  +    + KA+  N   A
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMTGGQ---QMGRGSEFGDYEKAAEAFTKAIEENKEDA 57

Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
               N       + + + A+ FY+ A   +   A A    G +Y  ++   +A + ++ A
Sbjct: 58  IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA 117

Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
           L            LG V     +   A   +++A+  N    EA    G+   + G +  
Sbjct: 118 LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177

Query: 421 AIDAYEQCLKIDPDSRNAGQNR 442
           A+  +    + DP   +A  N 
Sbjct: 178 ALSQFAAVTEQDPGHADAFYNA 199

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  177 bits (451), Expect = 3e-51
 Identities = 40/224 (17%), Positives = 83/224 (37%), Gaps = 7/224 (3%)

Query: 50  DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
                         +  A   +   +E++  +   +I     L   N    A   + +A+
Sbjct: 25  TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKAL 84

Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
           +LD   A A+   G +Y  +    EA + + KAL A             +   LGT L  
Sbjct: 85  ELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-------GDLFYMLGTVLVK 137

Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
               +  +     A++++ +   A +  G+  +     D AL  +     + P +A+A+ 
Sbjct: 138 LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFY 197

Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
           N GV Y  + + E A+   ++ + + P+  +A +   +      
Sbjct: 198 NAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  139 bits (354), Expect = 7e-38
 Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 7/186 (3%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
           AN+L S N+   ALA Y+  LE DS    A+ G G    ++ M + A D F +A++   +
Sbjct: 64  ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME 123

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
           N       G +     +   A     +A+  + +               G  L   G   
Sbjct: 124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND-------TEARFQFGMCLANEGMLD 176

Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
           + + ++    + DP +A A+YN GV Y+     + AL   +KA   +P +  A     ++
Sbjct: 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236

Query: 235 YKNRGD 240
             +   
Sbjct: 237 GHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  108 bits (272), Expect = 9e-27
 Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 7/153 (4%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
            N+   +  + +A  ++E  L     N +     G  L      +LA      AV+L+  
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
           +  A    G+   +EG L EA   +      DP +  A     +             N +
Sbjct: 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE-------NRE 210

Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207
             ++   +A+ I P +  A +   ++      +
Sbjct: 211 KALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  212 bits (543), Expect = 2e-64
 Identities = 41/257 (15%), Positives = 82/257 (31%), Gaps = 12/257 (4%)

Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245
           +   +   +++ G+V       D       K    R    +AY  +G+ Y  RG+ E A 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMGDQN---PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAK 57

Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305
               + L + P+   A   +A+             +       Y+KAL  +   A  + N
Sbjct: 58  VPLRKALEIDPSSADAHAALAVVFQTEM-------EPKLADEEYRKALASDSRNARVLNN 110

Query: 306 LGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363
            G    E  +++ A             P  +    NLG++        +A E ++ +L +
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170

Query: 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423
             N       +  +   + +   A +  +         A +      L +       A  
Sbjct: 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230

Query: 424 AYEQCLKIDPDSRNAGQ 440
              Q  ++ P S    +
Sbjct: 231 YGLQLKRLYPGSLEYQE 247

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  191 bits (487), Expect = 2e-56
 Identities = 43/261 (16%), Positives = 77/261 (29%), Gaps = 19/261 (7%)

Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
           +   +   H   G++ +         ++  K                     LG      
Sbjct: 1   MGSSHHHHHHSSGLVPRGSH---MGDQNPLKTDKGRDEA-------RDAYIQLGLGYLQR 50

Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
           GNT+       +AL+IDP  A A+  L VV+   M+   A   Y KA       A    N
Sbjct: 51  GNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110

Query: 231 MGVIYKNRGDLESAIACYERCLAVS--PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
            G     +   E A          +  P       N+ +    +           Q   Y
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM-------KKPAQAKEY 163

Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348
           ++K+L  N +       +     +  ++  A  +Y+L        A +      + K  +
Sbjct: 164 FEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFE 223

Query: 349 NLDKAVECYQMALSIKPNFSQ 369
           + D A         + P   +
Sbjct: 224 DRDTAASYGLQLKRLYPGSLE 244

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  156 bits (396), Expect = 1e-43
 Identities = 44/215 (20%), Positives = 81/215 (37%), Gaps = 16/215 (7%)

Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322
           ++ +  L   G      GD N       K         DA   LG+ Y +    + A V 
Sbjct: 8   HHHSSGLVPRG---SHMGDQN-----PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVP 59

Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
              A   +P  A+A   L V+++       A E Y+ AL+     ++ LNN G     Q 
Sbjct: 60  LRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK 119

Query: 383 KMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
           + + A + + +A      P  +  + NLG++       + A + +E+ L+++ +  +   
Sbjct: 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL 179

Query: 441 NRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQY 475
              +A     E    +   A R +   F +   Q 
Sbjct: 180 E--MADLLYKER---EYVPA-RQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  145 bits (368), Expect = 1e-39
 Identities = 33/211 (15%), Positives = 71/211 (33%), Gaps = 9/211 (4%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
                 R     A       LE D  + +AH    +  Q +   +LA + + +A+  D +
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSA--DPSYKPAAECLAIVLTDLGTSLKLAGN 172
           NA    + G    ++ R  EA +   +A      P         + V  +LG        
Sbjct: 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER-------SRVFENLGLVSLQMKK 156

Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
                + + ++L+++ +       +  +  +  +Y  A   Y+  A      A +     
Sbjct: 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI 216

Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
            + K   D ++A +   +   + P     + 
Sbjct: 217 RLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 16/103 (15%), Positives = 25/103 (24%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
             +     K   A   +E  L  +       +     L  +     A   +    +   Q
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157
           NA +      L K       AA    +     P      E  A
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA 250

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  211 bits (538), Expect = 2e-63
 Identities = 46/272 (16%), Positives = 90/272 (33%), Gaps = 15/272 (5%)

Query: 163 LGTSLKLAGNTQDGIQKYYEALK----IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
           L   L+     +  + +  + L      D   A   Y  GV+Y  L     A   + +A 
Sbjct: 11  LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 70

Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
             RP   E +  +G+     G+ ++A   ++  L + P +  A  N  IAL   G     
Sbjct: 71  AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG----- 125

Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF---YELAFHFNPHCAE 335
                            + +       L +A  ++ +     V    +E +         
Sbjct: 126 --RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI 183

Query: 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395
               LG I  ++  +++         S+  + S++   LG  Y   G +D+A  + + A+
Sbjct: 184 VEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242

Query: 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
           A N      +    +     G     +   +Q
Sbjct: 243 ANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  198 bits (505), Expect = 1e-58
 Identities = 43/277 (15%), Positives = 82/277 (29%), Gaps = 12/277 (4%)

Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
            ++           + E  L    +        D          A +L + G      G 
Sbjct: 6   RKSEVLAVPLQPTLQQEVILARMEQILASRALTDDER-------AQLLYERGVLYDSLGL 58

Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
                  + +AL I P     +  LG+  ++   +D A   ++      P Y  A+ N G
Sbjct: 59  RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118

Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
           +     G  + A           PN       + +A   L  K   E        +++K+
Sbjct: 119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLK----QHFEKS 174

Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
               W +    + LG    E    +              H +E    LG  Y    +LD 
Sbjct: 175 DKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 233

Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
           A   +++A++   +         +  ++ G+      
Sbjct: 234 ATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLA 270

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  189 bits (483), Expect = 1e-55
 Identities = 43/268 (16%), Positives = 88/268 (32%), Gaps = 15/268 (5%)

Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA----ALERPMYAEAYCNMGVIYKNRGDLESAIA 246
                 L V     +Q +  L   E+     AL     A+     GV+Y + G    A  
Sbjct: 5   WRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARN 64

Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
            + + LA+ P+     N + I LT  G       + +     +   L  +  Y  A  N 
Sbjct: 65  DFSQALAIRPDMPEVFNYLGIYLTQAG-------NFDAAYEAFDSVLELDPTYNYAHLNR 117

Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA---VECYQMALSI 363
           G+A     +  +A       +  +P+       L +  +  D         + ++ +   
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177

Query: 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423
           +  ++     LG +   Q  M+          +     +E    LG  Y   G +  A  
Sbjct: 178 QWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA 236

Query: 424 AYEQCLKIDPDSRNAGQNRLLAMNYINE 451
            ++  +  +  +    +  LL ++ + +
Sbjct: 237 LFKLAVANNVHNFVEHRYALLELSLLGQ 264

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  168 bits (428), Expect = 1e-47
 Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 50/314 (15%)

Query: 49  KDALSYANILRSRNKFVDALALYEIVLEK----DSGNVEAHIGKGICLQMQNMGRLAFDS 104
           + +   A  L+   +    LA  E +L      D    +    +G+      +  LA + 
Sbjct: 6   RKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARND 65

Query: 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
           FS+A+ + P       + GI     G    A E++                         
Sbjct: 66  FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS----------------------- 102

Query: 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224
                              L++DP Y  A+ N G+      +   A         + P  
Sbjct: 103 ------------------VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144

Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
                 + +  +   + + A    ++    S   +   N +   L ++  +  +E     
Sbjct: 145 PFRSLWLYLAEQKLDEKQ-AKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLK-- 201

Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
             A          H ++  + LG  Y  +   D A   ++LA   N H         +  
Sbjct: 202 --ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLEL 259

Query: 345 KDRDNLDKAVECYQ 358
                    +    
Sbjct: 260 SLLGQDQDDLAESD 273

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  152 bits (387), Expect = 5e-42
 Identities = 44/239 (18%), Positives = 79/239 (33%), Gaps = 16/239 (6%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLD 112
             +  S      A   +   L       E     GI L     G    A+++F   ++LD
Sbjct: 50  GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT--QAGNFDAAYEAFDSVLELD 107

Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
           P    AH + GI     GR   A +        DP+    +  L +    L         
Sbjct: 108 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE-- 165

Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
                Q + ++ K    +    + LG +  E    +                +E    +G
Sbjct: 166 --VLKQHFEKSDKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLG 222

Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
             Y + GDL+SA A ++  +A + +  +      + L+ LG   + + D+    A   +
Sbjct: 223 KYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLG---QDQDDL----AESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  138 bits (349), Expect = 8e-37
 Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 6/200 (3%)

Query: 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320
               +A+ L       + E  + +           +   A  +Y  GV Y  +    +A 
Sbjct: 7   KSEVLAVPLQPTL---QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALAR 63

Query: 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380
             +  A    P   E  N LG+      N D A E +   L + P ++ +  N G+    
Sbjct: 64  NDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123

Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
            G+   A + +      +P        L +  +       A +  +Q  +     +    
Sbjct: 124 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWGWN 182

Query: 441 NRLLAMNYINEGHDDKLFEA 460
                +  I+E     +   
Sbjct: 183 IVEFYLGNISE--QTLMERL 200

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 11/92 (11%), Positives = 20/92 (21%)

Query: 50  DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
               Y   +  +       A             E +   G           A   F  AV
Sbjct: 183 IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242

Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHK 141
             +  N   H +  +     G+  +      +
Sbjct: 243 ANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  227 bits (579), Expect = 2e-63
 Identities = 40/400 (10%), Positives = 99/400 (24%), Gaps = 18/400 (4%)

Query: 49  KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
              ++ A+     ++       L +           V A        Q     +      
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283

Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
            +A  L P    A    G   +    +        +A    P    A       +     
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVA-------IASHDG 336

Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
             +     Q  +    +A  + P    A  + G     L      L    +A    P   
Sbjct: 337 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQV 396

Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285
            A  + G   +    ++  +    +   ++P+  +A  +       L         + + 
Sbjct: 397 VAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL-------ETVQRL 448

Query: 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
           +    +          A+ +       +      +     A    P    A  +     +
Sbjct: 449 LPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQ 508

Query: 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
               + + +     A  + P+   ++ + G        +     ++ +A    P    A 
Sbjct: 509 ALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 568

Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
            + G   +   ++   +    Q   +      A  + +  
Sbjct: 569 ASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGG 608

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  223 bits (570), Expect = 3e-62
 Identities = 41/400 (10%), Positives = 101/400 (25%), Gaps = 18/400 (4%)

Query: 49  KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
              ++ A+     ++       L +           V A        Q     +      
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVL 249

Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
            +A  L P    A        +    +        +A    P          + +   G 
Sbjct: 250 CQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ-------VVAIASHGG 302

Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
             +     Q  +    +A  + P    A  +       L      L    +A    P   
Sbjct: 303 GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQV 362

Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285
            A  + G   +    ++  +    +   ++P+         +A+   G K  L   + + 
Sbjct: 363 VAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ-------VVAIASNGGKQAL-ETVQRL 414

Query: 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
           +    +A         A+ +       +      +          P    A  +     +
Sbjct: 415 LPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQ 474

Query: 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
             + + + +     A  + P+   ++ +          +     ++ +A    P    A 
Sbjct: 475 ALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAI 534

Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
            + G   +   ++   +    Q   + PD   A  +    
Sbjct: 535 ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 574

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  221 bits (565), Expect = 2e-61
 Identities = 42/406 (10%), Positives = 100/406 (24%), Gaps = 22/406 (5%)

Query: 45  GFEGKDALSYANILRSRNKFVDAL-----ALYEIVLEKDSGNVEAHIGKGICLQMQNMGR 99
             +    +  A   R     ++A+     AL    L      V A        Q     +
Sbjct: 152 QLDTGQLVKIAK--RGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQ 209

Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
                  +A  L P    A        +    +        +A    P          + 
Sbjct: 210 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQ-------VVA 262

Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
           +       +     Q  +    +A  + P    A  + G     L      L    +A  
Sbjct: 263 IASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHG 322

Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
             P    A  +     +    ++  +    +   ++P+  +A  +       L       
Sbjct: 323 LTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL------- 375

Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
             + + +    +A         A+ + G     +      +     A    P    A  +
Sbjct: 376 ETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVAIAS 434

Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
                +  + + + +        + P    ++ +          +     ++ +A    P
Sbjct: 435 HDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTP 494

Query: 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
               A  +     +   ++   +    Q   + PD   A  +    
Sbjct: 495 DQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGG 540

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  221 bits (564), Expect = 2e-61
 Identities = 39/396 (9%), Positives = 97/396 (24%), Gaps = 14/396 (3%)

Query: 50  DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
            A++     ++       L +           V A        Q     +       +  
Sbjct: 397 VAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTH 456

Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
            L P    A        +    + +      +A    P          + +       + 
Sbjct: 457 GLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQ-------VVAIASNIGGKQA 509

Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
               Q  +    +A  + P    A  + G     L      L    +A    P    A  
Sbjct: 510 LATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 569

Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289
           + G   +    ++  +    +   ++    +A  +       L T  +L       +   
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRL-------LPVL 622

Query: 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349
            +A         A+ +       +      +     A    P    A  + G   +  + 
Sbjct: 623 CQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 682

Query: 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409
           + + +     A  +      ++ +          +     ++ +A    P    A  + G
Sbjct: 683 VQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 742

Query: 410 VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
              +   ++   +    Q   + P    A  + +  
Sbjct: 743 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGG 778

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  218 bits (557), Expect = 2e-60
 Identities = 43/380 (11%), Positives = 103/380 (27%), Gaps = 15/380 (3%)

Query: 66  DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
           DA  L    L+ D+G +     +G    M+ +           + L P    A       
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG 201

Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
            +    +        +A    P+         + +       +     Q  +    +A  
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQ-------VVAIASHDGGKQALETMQRLLPVLCQAHG 254

Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245
           + P    A  +       L      L    +A    P    A  + G   +    ++  +
Sbjct: 255 LPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLL 314

Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305
               +   ++P+  +A  +       L T  +L       +    +A         A+ +
Sbjct: 315 PVLCQAHGLTPDQVVAIASHDGGKQALETVQRL-------LPVLCQAHGLTPDQVVAIAS 367

Query: 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365
            G     +      +     A    P    A  + G   +  + + + +     A  + P
Sbjct: 368 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGK-QALETVQRLLPVLCQAHGLTP 426

Query: 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425
           +   ++ +          +     ++ +     P    A  +     +   ++   +   
Sbjct: 427 DQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL 486

Query: 426 EQCLKIDPDSRNAGQNRLLA 445
            Q   + PD   A  + +  
Sbjct: 487 CQAHGLTPDQVVAIASNIGG 506

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  212 bits (540), Expect = 3e-58
 Identities = 37/386 (9%), Positives = 94/386 (24%), Gaps = 14/386 (3%)

Query: 53  SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
           S+    ++       L +           V A        Q     +       +A  L 
Sbjct: 434 SHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT 493

Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
           P    A        +    +        +A    P          + +   G   +    
Sbjct: 494 PDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ-------VVAIASNGGGKQALET 546

Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
            Q  +    +A  + P    A  + G     L      L    +A     +   A  +  
Sbjct: 547 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNI 606

Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
              +    ++  +    +   ++P   +A  +       L         + + +    +A
Sbjct: 607 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALE-------TVQRLLPVLCQA 659

Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
                    A+ + G     +      +     A         A  +     +  + + +
Sbjct: 660 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQR 719

Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
            +     A  + P+   ++ + G        +     ++ +A    P    A  +     
Sbjct: 720 LLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGK 779

Query: 413 RDAGSISLAIDAYEQCLKIDPDSRNA 438
           +   ++   +    Q   +      A
Sbjct: 780 QALETVQRLLPVLCQDHGLTLAQVVA 805

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  198 bits (504), Expect = 1e-53
 Identities = 36/391 (9%), Positives = 92/391 (23%), Gaps = 14/391 (3%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
               ++       L +           V A        Q     +       +A  L P 
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPD 529

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
              A    G   +    +        +A    P    A       +   G   +     Q
Sbjct: 530 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA-------IASNGGGKQALETVQ 582

Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
             +    +A  +      A  +       L      L    +A    P    A  +    
Sbjct: 583 RLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGG 642

Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
            +    ++  +    +   ++P+  +A  +       L         + + +    +A  
Sbjct: 643 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE-------TVQRLLPVLCQAHG 695

Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354
                  A+ +       +      +     A    P    A  + G   +  + + + +
Sbjct: 696 LTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 755

Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
                A  + P    ++ +          +     ++ +          A  +     + 
Sbjct: 756 PVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQA 815

Query: 415 AGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
             ++   +    Q   +  D   A  + +  
Sbjct: 816 LETVQRLLPVLCQAHGLTQDQVVAIASNIGG 846

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  185 bits (470), Expect = 3e-49
 Identities = 37/380 (9%), Positives = 88/380 (23%), Gaps = 14/380 (3%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
               ++       L +           V A    G   Q     +       +A  L P 
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 563

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
              A    G   +    +        +A         A          L T        Q
Sbjct: 564 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALET-------VQ 616

Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
             +    +A  + P    A  +       L      L    +A    P    A  + G  
Sbjct: 617 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 676

Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
            +    ++  +    +   ++    +A  +       L         + + +    +A  
Sbjct: 677 KQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALE-------TVQRLLPVLCQAHG 729

Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354
                  A+ + G     +      +     A    P    A  +     +  + + + +
Sbjct: 730 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLL 789

Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
                   +      ++ +          +     ++ +A         A  +     + 
Sbjct: 790 PVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQA 849

Query: 415 AGSISLAIDAYEQCLKIDPD 434
             ++   +    Q   + PD
Sbjct: 850 LETVQRLLPVLCQDHGLTPD 869

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  185 bits (470), Expect = 3e-49
 Identities = 36/347 (10%), Positives = 88/347 (25%), Gaps = 10/347 (2%)

Query: 99  RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
                ++   +   P+                R +EA  +    L   P      + + I
Sbjct: 102 GTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKI 161

Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
                G    +              L + P    A  +       L      L    +A 
Sbjct: 162 --AKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAH 219

Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
              P    A  +     +    ++  +    +   + P+  +A  +       L      
Sbjct: 220 GLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALE----- 274

Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
              + + +    +A         A+ + G     +      +     A    P    A  
Sbjct: 275 --TVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 332

Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
           +     +  + + + +     A  + P+   ++ + G        +     ++ +A    
Sbjct: 333 SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 392

Query: 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
           P    A  + G   +   ++   +    Q   + PD   A  +    
Sbjct: 393 PDQVVAIASNGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGG 438

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  176 bits (447), Expect = 3e-46
 Identities = 32/390 (8%), Positives = 90/390 (23%), Gaps = 14/390 (3%)

Query: 53  SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
           S     ++       L +           V A    G   Q     +       +A  L 
Sbjct: 536 SNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 595

Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
                A        +    +        +A    P+         + +       +    
Sbjct: 596 QVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ-------VVAIASHDGGKQALET 648

Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
            Q  +    +A  + P    A  + G     L      L    +A         A  +  
Sbjct: 649 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNN 708

Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
              +    ++  +    +   ++P+  +A  +       L         + + +    +A
Sbjct: 709 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE-------TVQRLLPVLCQA 761

Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
                    A+ +       +      +               A  +     +  + + +
Sbjct: 762 HGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQR 821

Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
            +     A  +  +   ++ +          +     ++ +     P    A  +     
Sbjct: 822 LLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGK 881

Query: 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
           +   ++   +    Q   +  D   A  + 
Sbjct: 882 QALETVQRLLPVLCQDHGLTLDQVVAIASN 911

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  171 bits (434), Expect = 1e-44
 Identities = 36/329 (10%), Positives = 89/329 (27%), Gaps = 9/329 (2%)

Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
            +   H H   L +    L   A +Y   ++A P        +  V      +  L    
Sbjct: 83  GHGFTHAHIVALSQHPAALGTVAVTYQHIITALPEATHED--IVGVGKQWSGARALEALL 140

Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
            D  +     L++D          G V +    + +            P    A  +   
Sbjct: 141 TDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNG 200

Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
             +    ++  +    +   ++P   +A  +       L         + + +    +A 
Sbjct: 201 GKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALE-------TMQRLLPVLCQAH 253

Query: 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 353
                   A+ +       +      +     A    P    A  + G   +  + + + 
Sbjct: 254 GLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRL 313

Query: 354 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
           +     A  + P+   ++ +          +     ++ +A    P    A  + G   +
Sbjct: 314 LPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 373

Query: 414 DAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
              ++   +    Q   + PD   A  + 
Sbjct: 374 ALETVQRLLPVLCQAHGLTPDQVVAIASN 402

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  148 bits (375), Expect = 3e-37
 Identities = 32/338 (9%), Positives = 80/338 (23%), Gaps = 13/338 (3%)

Query: 114 QNACAHTHCGILYKDEGRLVEAAESYH-KALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
           Q + A     +  +  G   +  E    K  S    +  A          +    +    
Sbjct: 41  QPSDASPAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQHPAA 100

Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
                  Y   +   P                 +   AL          P+  +    + 
Sbjct: 101 LGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVK 160

Query: 233 VIYKNRGDLESAIACYERCLAV-----SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287
           +  +       A+      L       +P   +A  +       L         + + + 
Sbjct: 161 IAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALE-------TVQRLLP 213

Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347
              +A         A+ +       +      +     A    P    A  +     +  
Sbjct: 214 VLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQAL 273

Query: 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
           + + + +     A  + P+   ++ + G        +     ++ +A    P    A  +
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 333

Query: 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
                +   ++   +    Q   + PD   A  +    
Sbjct: 334 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 371

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  144 bits (364), Expect = 8e-36
 Identities = 46/430 (10%), Positives = 105/430 (24%), Gaps = 48/430 (11%)

Query: 45   GFEGKDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLA 101
            G      ++ A+     ++       L +           V A    G   Q     +  
Sbjct: 627  GLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 686

Query: 102  FDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161
                 +A  L  +   A        +    +        +A    P          + + 
Sbjct: 687  LPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ-------VVAIA 739

Query: 162  DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT------------ 209
              G   +     Q  +    +A  + P    A  +       L                 
Sbjct: 740  SNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLT 799

Query: 210  ---------------ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254
                           AL   ++             +  V   +    + A+   +R L V
Sbjct: 800  LAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPV 859

Query: 255  SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 314
                     +  +A+       +    + + +    +          A+ + G     + 
Sbjct: 860  LCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGG-KQALE 918

Query: 315  KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
                 +          P    A  +     +  + + + +        + PN   ++ + 
Sbjct: 919  TVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASN 978

Query: 375  GVVYTVQGKMDAAAEMIEKAIAA-NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
            G    ++  + A     + A+AA    +  A   LG           A+DA ++ L   P
Sbjct: 979  GGKQALE-SIVAQLSRPDPALAALTNDHLVALACLGGRP--------AMDAVKKGLPHAP 1029

Query: 434  DSRNAGQNRL 443
            +       R+
Sbjct: 1030 ELIRRVNRRI 1039

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  208 bits (532), Expect = 9e-63
 Identities = 41/261 (15%), Positives = 78/261 (29%), Gaps = 9/261 (3%)

Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247
              A      G  + +  Q+D A+  Y KA            N       +G+ E+AI+ 
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60

Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307
               +            ++ +   +G       +    +   KK + Y        +   
Sbjct: 61  LNDAVEQGREMRADYKVISKSFARIG-------NAYHKLGDLKKTIEYYQKSLTE-HRTA 112

Query: 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
               ++   +  +   E   + NP  AE     G  Y  + +   AV+ Y   +   P  
Sbjct: 113 DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172

Query: 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
           ++  +N             A     KAI  +P +  AY             + A++  + 
Sbjct: 173 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232

Query: 428 CLKIDPDSRNAGQNRLLAMNY 448
               D +  N    R +   Y
Sbjct: 233 ARTKDAEVNNGSSAREIDQLY 253

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  189 bits (483), Expect = 1e-55
 Identities = 38/298 (12%), Positives = 74/298 (24%), Gaps = 50/298 (16%)

Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
              A      G  +    +  EA E Y+KA                              
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT---------------------- 39

Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
                                  N      E  +Y+TA+     A  +       Y  + 
Sbjct: 40  --------------------YLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79

Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
             +   G+    +   ++ +          +  A  LT L        +  + +   +  
Sbjct: 80  KSFARIGNAYHKLGDLKKTIEYYQKSLTE-HRTADILTKL-------RNAEKELKKAEAE 131

Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
            Y N   A+     G  Y     +  A+  Y       P  A   +N         +  +
Sbjct: 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPE 191

Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
           A+     A+   PNF ++            +  +A E ++ A   +       +   +
Sbjct: 192 AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 249

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  166 bits (422), Expect = 5e-47
 Identities = 36/255 (14%), Positives = 68/255 (26%), Gaps = 16/255 (6%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
            N      +F +A+  Y    E    ++     +      +     A  + ++AV+   +
Sbjct: 12  GNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE 70

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
               +      +   G          K +             A +LT L        N +
Sbjct: 71  MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS-LTEHRTADILTKLR-------NAE 122

Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
             ++K      ++P  A      G  Y     +  A+  Y +     P  A  Y N    
Sbjct: 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAA 182

Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
                    AIA   + +   PNF  A    A A   +        +    +     A  
Sbjct: 183 LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV-------KEYASALETLDAART 235

Query: 295 YNWHYADAMYNLGVA 309
            +    +      + 
Sbjct: 236 KDAEVNNGSSAREID 250

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  152 bits (386), Expect = 4e-42
 Identities = 25/219 (11%), Positives = 57/219 (26%), Gaps = 8/219 (3%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
           A     + ++  A++     +E+       +                     + ++   +
Sbjct: 45  AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK 104

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
           +   H     +        +  +        +P         A      G       +  
Sbjct: 105 SLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEK-------AEEARLEGKEYFTKSDWP 156

Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
           + ++ Y E +K  P  A  Y N     ++LM +  A+    KA  + P +  AY      
Sbjct: 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 216

Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
                +  SA+   +             +   I      
Sbjct: 217 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  116 bits (292), Expect = 3e-29
 Identities = 24/188 (12%), Positives = 51/188 (27%), Gaps = 8/188 (4%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
           +            L   +  +E    ++  H      L                  ++P+
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPE 137

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
            A      G  Y  +     A ++Y + +   P         A  L  L        +  
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM-------SFP 190

Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
           + I    +A++ DP++  AY         + +Y +AL   + A  +            + 
Sbjct: 191 EAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250

Query: 235 YKNRGDLE 242
                  +
Sbjct: 251 QLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 71.4 bits (176), Expect = 6e-14
 Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 7/119 (5%)

Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424
            + +      G  +    + D A E   KA   +       NN      + G    AI  
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60

Query: 425 YEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKD 483
               ++   + R   +    +   I        +    D  K+ +  Y +  +   T D
Sbjct: 61  LNDAVEQGREMRADYKVISKSFARIG-----NAYHKLGDL-KKTIEYYQKSLTEHRTAD 113

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  205 bits (524), Expect = 2e-61
 Identities = 41/268 (15%), Positives = 76/268 (28%), Gaps = 21/268 (7%)

Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG---CYEKAAL 219
               L    N  + I+ + +      +    Y    V Y EL +YD A      Y     
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68

Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
                +  +   G I   +G    AI  Y+  +            +     + G      
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG------ 122

Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
            +    + Y +K +          Y LG AY    ++  A   +       P+       
Sbjct: 123 -NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLW 181

Query: 340 LGVIYKDRDNLDK---AVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAA 388
                  +D   K   A   Y+  + +        K    ++   +   YT+      A 
Sbjct: 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241

Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRDAG 416
              +  +A +PT  +A + L +      
Sbjct: 242 AAWKNILALDPTNKKAIDGLKMKLEHHH 269

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  196 bits (501), Expect = 4e-58
 Identities = 43/275 (15%), Positives = 74/275 (26%), Gaps = 21/275 (7%)

Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA---CYE 249
             +       +   Y  A+  + K   ++      Y    V Y      + A      Y 
Sbjct: 5   VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64

Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
             +  +             L   G         +  +  Y+ A+  +    D    +G  
Sbjct: 65  SKVNATKAKSADFEYYGKILMKKG-------QDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117

Query: 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369
           +     F +AI + E          +    LG  Y       KA   +   L +KPN   
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177

Query: 370 SLNNLGVVYTVQG---KMDAAAEMIEKAI--------AANPTYAEAYNNLGVLYRDAGSI 418
                      Q    K   A    EK I               EA   +   Y      
Sbjct: 178 GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237

Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
             A  A++  L +DP ++ A     + + + +  H
Sbjct: 238 VKADAAWKNILALDPTNKKAIDGLKMKLEHHHHHH 272

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  187 bits (478), Expect = 7e-55
 Identities = 44/306 (14%), Positives = 86/306 (28%), Gaps = 40/306 (13%)

Query: 81  NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA---AE 137
           N +        L   N    A + F++       +   +    + Y +  +   A    E
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197
           +Y   ++A  +        +      G  L   G     IQ+Y  A+  D      Y  +
Sbjct: 62  TYFSKVNATKAK-------SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQI 114

Query: 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
           G  +     +  A+   EK         + +  +G  Y    +   A + + + L + PN
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174

Query: 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 317
             I     A A        K          YY+K +                        
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAK----PYYEKLIEVCAPGGAK--------------- 215

Query: 318 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377
                      +     EA   +   Y    +  KA   ++  L++ P   ++++ L + 
Sbjct: 216 -----------YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264

Query: 378 YTVQGK 383
                 
Sbjct: 265 LEHHHH 270

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  179 bits (457), Expect = 8e-52
 Identities = 31/233 (13%), Positives = 64/233 (27%), Gaps = 8/233 (3%)

Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
           M  +             +   AI  + +  A   N     N  A+   +L      + DI
Sbjct: 1   MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60

Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
                 Y   +      +      G    +  +  +AI  Y+ A   +    +    +G 
Sbjct: 61  ET----YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGS 116

Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
            + ++ N   A++  +  +       +    LG  Y    +   A     K +   P   
Sbjct: 117 YFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY 176

Query: 403 EAYNNLGVLYRDAGSIS---LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452
             Y             +   LA   YE+ +++        ++  L        
Sbjct: 177 IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDE-LIEANEYIA 228

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  145 bits (368), Expect = 2e-39
 Identities = 37/233 (15%), Positives = 66/233 (28%), Gaps = 21/233 (9%)

Query: 55  ANILRSRNKFVDALA---LYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
           A       K+  A      Y   +             G  L  +    LA   +  AV  
Sbjct: 44  AVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103

Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
           D      +   G  + ++G    A +   K +    +          V  +LG +     
Sbjct: 104 DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD-------PKVFYELGQAYYYNK 156

Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---MQYDTALGCYEKA--------ALE 220
                   + + L++ P+    Y       +      +   A   YEK         A  
Sbjct: 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216

Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
           +    EA   +   Y    D   A A ++  LA+ P  + A + + + L    
Sbjct: 217 KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 94.3 bits (235), Expect = 1e-21
 Identities = 18/157 (11%), Positives = 41/157 (26%), Gaps = 4/157 (2%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
            +   ++  F  A+   E  +   + + +     G           A  SF + ++L P 
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174

Query: 115 NACAHTHCGILY---KDEGRLVEAAESYHKALSADPSYKPAAE-CLAIVLTDLGTSLKLA 170
               +            + +   A   Y K +          +  L      +     + 
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234

Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207
            +       +   L +DP    A   L +       +
Sbjct: 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  209 bits (533), Expect = 2e-60
 Identities = 62/406 (15%), Positives = 118/406 (29%), Gaps = 52/406 (12%)

Query: 54  YANILRSRNKFVDALALYEIVLE--------KDSGNVEAHIGKGICLQMQNMGRL--AFD 103
           YA +     +  D     + V              + E    +G         +   A  
Sbjct: 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKV 159

Query: 104 SFSEAVKLDPQNACAHTHCGILY---KDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
            F +A++  P+N    +   I      +      A +   +A+  +P  +     LA+ L
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219

Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
             +    +      +G +   EAL+  P       +    Y    + D A+   +KA   
Sbjct: 220 HKMR---EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276

Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280
            P  A  +C +G  Y+ +               V    E                 KL  
Sbjct: 277 IPNNAYLHCQIGCCYRAKV------------FQVMNLRENGMYGKR----------KLLE 314

Query: 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC--- 337
            I   VA+ KKA   N +       L   +    +++ A  +++  F             
Sbjct: 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374

Query: 338 NNLGVI-YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
              G          DKA+  +   + I     +               D   ++ +  ++
Sbjct: 375 LRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK----------DKLQKIAKMRLS 424

Query: 397 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
            N   +EA + L  L      +  A +  E+ L+      +A    
Sbjct: 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  190 bits (483), Expect = 2e-53
 Identities = 44/353 (12%), Positives = 100/353 (28%), Gaps = 52/353 (14%)

Query: 52  LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGI---CLQMQNMGRLAFDSFSEA 108
             +  +    N+   A   +E  LEK   N E   G  I    L      + A D   +A
Sbjct: 142 EGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201

Query: 109 VKLDPQNACAHTHCGI----LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
           ++L+P N        +    + ++     E  +   +AL   P           VL    
Sbjct: 202 IRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV-------TDVLRSAA 254

Query: 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM------------------- 205
              +        I+   +AL+  P+ A  +  +G  Y   +                   
Sbjct: 255 KFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLE 314

Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK--- 262
               A+   +KA             +  ++      E A   +++  +        +   
Sbjct: 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374

Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322
                               ++ + ++ + +  N    +    +     ++         
Sbjct: 375 LRYGNFQLYQM------KCEDKAIHHFIEGVKINQKSREK-EKMKDKLQKI--------- 418

Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
            ++    N   +EA + L  + +  + + +A E  +  L        + +  G
Sbjct: 419 AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  186 bits (474), Expect = 3e-52
 Identities = 54/373 (14%), Positives = 95/373 (25%), Gaps = 71/373 (19%)

Query: 103 DSFSEAVKLDPQNACAHTHC--GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
           D      +   +   A        L   +G+   A E   KA                  
Sbjct: 36  DKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ------- 88

Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
                                     +      + N   VY  + +        +K    
Sbjct: 89  -------------------------AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV 123

Query: 221 RPMYA--------EAYCNMG--VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270
              ++        E  C  G   +       E A  C+E+ L   P      + +AIA  
Sbjct: 124 CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY 183

Query: 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF----DMAIVFYELA 326
            L      +  I+      ++A+  N         L +   +M +            E A
Sbjct: 184 RLDNWPPSQNAID----PLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEA 239

Query: 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386
               P   +   +    Y+ +D  DKA+E  + AL   PN +     +G  Y  +     
Sbjct: 240 LEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM 299

Query: 387 -------------------AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
                              A   ++KA  AN       + L  L+  A     A   +++
Sbjct: 300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK 359

Query: 428 CLKIDPDSRNAGQ 440
               +        
Sbjct: 360 EFSKELTPVAKQL 372

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  165 bits (419), Expect = 1e-44
 Identities = 47/335 (14%), Positives = 90/335 (26%), Gaps = 52/335 (15%)

Query: 167 LKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------- 217
           ++   +  D   K +   +       A     L  +     Q + AL C  KA       
Sbjct: 25  MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE 84

Query: 218 --ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK--------NNMAI 267
                       + N   +Y + G L       ++   V   F                 
Sbjct: 85  HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144

Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY---GEMLKFDMAIVFYE 324
                G          +    ++KAL       +    L +A            AI    
Sbjct: 145 TRLKCGGN-----QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199

Query: 325 LAFHFNPHCAEACNNLGVIY----KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380
            A   NP        L +      ++ +   +  +  + AL   P  +  L +    Y  
Sbjct: 200 QAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259

Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS-------------------ISLA 421
           + + D A E+++KA+   P  A  +  +G  YR                       I  A
Sbjct: 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA 319

Query: 422 IDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
           +   ++  + + +         LA  +      ++
Sbjct: 320 VAHLKKADEANDNLFRVCSI--LASLHALADQYEE 352

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  200 bits (512), Expect = 2e-60
 Identities = 46/211 (21%), Positives = 76/211 (36%), Gaps = 5/211 (2%)

Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
               LGV    L +YD AL  +E+A  E P   EA   +       G +  A+   +  +
Sbjct: 7   NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV 66

Query: 253 AVSPNFEIAKNNMAIALTDLG----TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGV 308
           A +P +      ++ A   L      + + +G + Q ++  K A   N  YA      G+
Sbjct: 67  ARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL 126

Query: 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368
            Y  + + D A    + A        E  + L  +Y     LD+A+  Y  AL   P   
Sbjct: 127 VYALLGERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL 185

Query: 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
                      ++GK + AA         + 
Sbjct: 186 DLRVRYASALLLKGKAEEAARAAALEHHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  174 bits (443), Expect = 2e-50
 Identities = 44/222 (19%), Positives = 80/222 (36%), Gaps = 12/222 (5%)

Query: 81  NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
             +  +  G+ L        A   F  A+K +PQ+  A           G +  A E+  
Sbjct: 4   AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGK 63

Query: 141 KALSADPSYKPAAECLAIVLTDLG----TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196
             ++  P Y      L+     L        +  G  +  +    +A +++P YAP +  
Sbjct: 64  TLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQ 123

Query: 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256
            G+VY+ L + D A    ++ AL      E    +  +Y + G L+ A+A Y + L  +P
Sbjct: 124 RGLVYALLGERDKAEASLKQ-ALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAP 182

Query: 257 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
                +   A AL          G   +         +++ H
Sbjct: 183 KDLDLRVRYASALLLK-------GKAEEAARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  139 bits (354), Expect = 4e-38
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 11/146 (7%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
                 LGV    + ++D A+  +E A   NP   EA   L         ++ A+E  + 
Sbjct: 5   EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64

Query: 360 ALSIKPNFSQSLNNLGVVYT-----------VQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
            ++  P +      L   Y             +G ++ A  +++ A   NP YA  +   
Sbjct: 65  LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124

Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPD 434
           G++Y   G    A  + +Q L ++  
Sbjct: 125 GLVYALLGERDKAEASLKQALALEDT 150

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  113 bits (284), Expect = 1e-28
 Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 11/120 (9%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
            +    LGV        D A+  ++ AL   P   ++L  L       G ++ A E  + 
Sbjct: 5   EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64

Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISL-----------AIDAYEQCLKIDPDSRNAGQNR 442
            +A  P Y   Y  L   Y      +            A+   +   +++P        R
Sbjct: 65  LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 80.3 bits (199), Expect = 3e-17
 Identities = 18/78 (23%), Positives = 29/78 (37%)

Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424
               Q+   LGV     G+ DAA  + E+A+  NP   EA   L       G ++ A++ 
Sbjct: 2   QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61

Query: 425 YEQCLKIDPDSRNAGQNR 442
            +  +   P         
Sbjct: 62  GKTLVARTPRYLGGYMVL 79

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  201 bits (513), Expect = 3e-58
 Identities = 71/373 (19%), Positives = 127/373 (34%), Gaps = 55/373 (14%)

Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALS-ADPSYKPAAECLAIVLTDLGTSLKL 169
           L   ++ + +   +     G       S+         S   ++ CL   L   G  L  
Sbjct: 3   LGSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLE--LALEGERLCN 60

Query: 170 AGNTQDGIQKYYEALKI----DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE----- 220
           AG+ + G+  +  A++         +  Y  LG  Y  L  Y+ A+  ++   L      
Sbjct: 61  AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD-LTLAKSM 119

Query: 221 --RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF----EIAK--NNMAIALTDL 272
             R   A++  N+G   K  G  + A  C ER L ++          +   N+       
Sbjct: 120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179

Query: 273 G----------TKVKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKF 316
           G              ++  + + V +Y++ L              A  NLG  Y  +  F
Sbjct: 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF 239

Query: 317 DMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------K 364
             AI  ++        F        A +NLG  +      + A E Y+  L++      +
Sbjct: 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299

Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAANPTYAEAYNNLGVLYRDAGSI 418
              +QS  +LG  YT+  + + A E   +       +      A A  +LG  +   G  
Sbjct: 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGH 359

Query: 419 SLAIDAYEQCLKI 431
             A+   EQ L++
Sbjct: 360 ERALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  183 bits (467), Expect = 1e-51
 Identities = 58/348 (16%), Positives = 109/348 (31%), Gaps = 63/348 (18%)

Query: 171 GNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE---- 220
           G+   G   +    +                  G            +  ++ A ++    
Sbjct: 22  GSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAA-IQAGTE 80

Query: 221 -RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
                +  Y  +G  Y   GD   A+  ++  L ++ +    +   A +  +LG  +K+ 
Sbjct: 81  DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN-DRLGEAKSSGNLGNTLKVM 139

Query: 280 GDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEM-----------------LKF 316
           G  ++     ++ L              A+YNLG  Y                       
Sbjct: 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL 199

Query: 317 DMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------K 364
             A+ FY+                 AC NLG  Y    +   A+E +Q  L I      +
Sbjct: 200 TRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259

Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAANPTYAEAYNNLGVLYRDAGSI 418
               ++ +NLG  +   G+ + AAE  ++       +      A++  +LG  Y      
Sbjct: 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF 319

Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
           + AI+ + + L I   ++  G     A    +      L  AH   G 
Sbjct: 320 NTAIEYHNRHLAI---AQELGDRIGEARACWS------LGNAHSAIGG 358

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 89.3 bits (222), Expect = 4e-19
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 17/147 (11%)

Query: 123 GILYKDEGRLVEAAESYHKALSADPSYK-PAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181
           G  Y   G    A E + + L     +   AAE      ++LG S    G  +D  + Y 
Sbjct: 230 GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE--RRANSNLGNSHIFLGQFEDAAEHYK 287

Query: 182 EALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------RPMYAEAY 228
             L +          A + Y+LG  Y+ L +++TA+  + +  L        R   A A 
Sbjct: 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH-LAIAQELGDRIGEARAC 346

Query: 229 CNMGVIYKNRGDLESAIACYERCLAVS 255
            ++G  +   G  E A+   E+ L ++
Sbjct: 347 WSLGNAHSAIGGHERALKYAEQHLQLA 373

>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A Length = 631

 Score =  197 bits (502), Expect = 1e-54
 Identities = 52/368 (14%), Positives = 117/368 (31%), Gaps = 31/368 (8%)

Query: 314 LKFDMAIVFYELAFHFNPHCAEACN-NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 372
            +  +A++F    F    H  +  N           +LD +         +    S    
Sbjct: 105 YQRWLALIFASSPFVNADHILQTYNREPNRKNSLEIHLDSSKSSLIKFCILYLPESNVNL 164

Query: 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432
           NL V++ +      A+             + A+N    + +            +Q   ++
Sbjct: 165 NLDVMWNIS-PELCASLCFALQSPRFIGTSTAFNKRATILQWF------PRHLDQLKNLN 217

Query: 433 PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN-----TKDPERP 487
                   +  +  +Y    +   +  A     +R   + S+Y   D           +P
Sbjct: 218 NIPSAISHDVYMHCSYDTSVNKHDVKRALNHVIRRH--IESEYGWKDRDVAHIGYRNNKP 275

Query: 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIW 547
           +++  +   +  HS+     +  +    +++ ++   +    D       ++       +
Sbjct: 276 VMVVLLEHFHSAHSIYRTH-STSMIAAREHFYLIGLGSP-SVDQAGQEVFDE-------F 326

Query: 548 RDIYGIDEKKVAAMVR----EDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTT 603
             + G + K+    +R     +   I    +       +     + AP+Q   +G+P TT
Sbjct: 327 HLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASNTRLAPIQAIALGHPATT 386

Query: 604 GLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPT-PALTNGFITF 662
               I+Y I +   D   +++   E L+RLP+  L Y PS  A              +  
Sbjct: 387 HSDFIEYVIVE--DDYVGSEECFSETLLRLPKDALPYVPSALAPEKVDYLLRENPEVVNI 444

Query: 663 GSFNNLAK 670
           G  +   K
Sbjct: 445 GIASTTMK 452

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  188 bits (481), Expect = 2e-54
 Identities = 70/333 (21%), Positives = 114/333 (34%), Gaps = 55/333 (16%)

Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQY 207
           +A CL   L   G  L  +G+ + G+  +  A+++        +  Y  LG  Y  L  Y
Sbjct: 2   SASCLE--LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 59

Query: 208 DTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS------ 255
             AL  +           ++   A+A  N+G   K  G+ + AI C +R L +S      
Sbjct: 60  AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 119

Query: 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY------YKKAL-YYN------------ 296
                A  N+       G      G  + G          + A+  Y             
Sbjct: 120 VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDR 179

Query: 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNL 350
                A  NLG  +  +  F  A++ +E        F        A +NLG  Y      
Sbjct: 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 239

Query: 351 DKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAAN 398
           + A E Y+  L +      +   +QS  +LG  YT+    + A +   K       +   
Sbjct: 240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299

Query: 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
                A  +LG  Y   G+   A+   E+ L+I
Sbjct: 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  147 bits (374), Expect = 2e-39
 Identities = 49/283 (17%), Positives = 92/283 (32%), Gaps = 42/283 (14%)

Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALE-----RPMYAEAYCNMGVIYKNRGDLESAI 245
                  G    +       +  +E A ++         +  Y  +G  Y    D   A+
Sbjct: 5   CLELALEGERLCKSGDCRAGVSFFEAA-VQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 63

Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL------YYNWHY 299
             +   L ++      +   A A  +LG  +K+ G+ ++ +   ++ L            
Sbjct: 64  EYHHHDLTLARTIG-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
           A A+YNLG  Y    K                      +        R+ L  AV+ Y+ 
Sbjct: 123 ARALYNLGNVYHAKGKSFGCPGPQ--------------DTGEFPEDVRNALQAAVDLYEE 168

Query: 360 ALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA------ANPTYAEAYNN 407
            LS+      +    ++  NLG  + + G    A    E+ +              AY+N
Sbjct: 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 228

Query: 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450
           LG  Y   G    A + Y++ L +   +R      + A +  +
Sbjct: 229 LGNAYIFLGEFETASEYYKKTLLL---ARQLKDRAVEAQSCYS 268

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  141 bits (358), Expect = 2e-37
 Identities = 70/337 (20%), Positives = 114/337 (33%), Gaps = 63/337 (18%)

Query: 87  GKGICLQMQNMGRL---------AFDSFSEAVKLDPQN----ACAHTHCGILYKDEGRLV 133
           G   CL++   G               F  AV++  ++    +  ++  G  Y       
Sbjct: 1   GSASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA 60

Query: 134 EAAESYHKALSADPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---- 187
           +A E +H  L+   +   +      A    +LG +LK+ GN  + I      L I     
Sbjct: 61  KALEYHHHDLTLARTIGDQLG---EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117

Query: 188 --PHYAPAYYNLGVVYSEL--------------------MQYDTALGCYEKA------AL 219
                A A YNLG VY                            A+  YE+         
Sbjct: 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177

Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
           +R     A+ N+G  +   G+   A+  +E+ L ++  F   K     A ++LG      
Sbjct: 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFL 236

Query: 280 GDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------F 327
           G+      YYKK L            A + Y+LG  Y  +  ++ AI ++          
Sbjct: 237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296

Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
                   AC +LG  Y    N D+A+   +  L I 
Sbjct: 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 99.6 bits (249), Expect = 6e-23
 Identities = 54/267 (20%), Positives = 102/267 (38%), Gaps = 43/267 (16%)

Query: 51  ALSYANI---LRSRNKFVDALALYEIVLE--KDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
           A +  N+   L+    F +A+   +  L+  ++  +    +G+   L   N+G +     
Sbjct: 83  AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND---KVGEARALY--NLGNVYHA-- 135

Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH-KALSADPSYKPAAECLAIVLTDLG 164
               K            G   +D    ++AA   + + LS   +    A        +LG
Sbjct: 136 ----KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAA-QGRAFGNLG 190

Query: 165 TSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA- 217
            +  L GN +D +  + + L I            AY NLG  Y  L +++TA   Y+K  
Sbjct: 191 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250

Query: 218 -----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF----EIAK--NNMA 266
                  +R + A++  ++G  Y    D E AI  + + LA++          +   ++ 
Sbjct: 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLG 310

Query: 267 IALTDLGTKVKLEGDINQGVAYYKKAL 293
            A T L       G+ +Q + + +K L
Sbjct: 311 NAYTAL-------GNHDQAMHFAEKHL 330

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  180 bits (460), Expect = 2e-53
 Identities = 38/227 (16%), Positives = 78/227 (34%), Gaps = 44/227 (19%)

Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
           D      Y + G+ +++  +Y  A+   E+         +   ++G+ Y   G ++    
Sbjct: 4   DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63

Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
             ER LA +P+                                                L
Sbjct: 64  LLERSLADAPD-----------------------------------------NVKVATVL 82

Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
           G+ Y ++ K+D+A+         NP        LGV   +    D+A++ +++AL ++PN
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142

Query: 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
             +    +   Y   G+ + A    +KA   +   +     L ++ R
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE---LALVPR 186

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  174 bits (445), Expect = 3e-51
 Identities = 31/183 (16%), Positives = 59/183 (32%), Gaps = 7/183 (3%)

Query: 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
              ++   +  I+    G         +Q V   ++    +    D   +LG+AY +   
Sbjct: 5   DIRQVYYRDKGISHAKAG-------RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA 57

Query: 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
            D      E +    P   +    LG+ Y      D AV          P        LG
Sbjct: 58  VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG 117

Query: 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
           V     G+ D A +  + A+   P   + +  +   Y   G    A+  +++  ++D  +
Sbjct: 118 VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177

Query: 436 RNA 438
              
Sbjct: 178 SVE 180

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  164 bits (417), Expect = 3e-47
 Identities = 31/216 (14%), Positives = 64/216 (29%), Gaps = 44/216 (20%)

Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
            G S   AG     +    +    D        +LG+ Y +    D      E++  + P
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73

Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
              +    +G+ Y      + A+    +    +P                          
Sbjct: 74  DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------------------------- 108

Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
                             +  + LGVA   + +FD AI  +++A    P+  +    +  
Sbjct: 109 ----------------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAF 152

Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 378
            Y+     ++A+  ++ A  +    S     L +V 
Sbjct: 153 SYEQMGRHEEALPHFKKANELDEGASV---ELALVP 185

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  150 bits (382), Expect = 2e-42
 Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 7/179 (3%)

Query: 83  EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142
             +  KGI          A     +    D  +     H GI Y   G +    E   ++
Sbjct: 9   VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68

Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202
           L+  P           V T LG +          +    +  + +P      + LGV   
Sbjct: 69  LADAPDN-------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD 121

Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
            L ++D A+  ++ A   RP   + +  +   Y+  G  E A+  +++   +     + 
Sbjct: 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  149 bits (379), Expect = 5e-42
 Identities = 29/145 (20%), Positives = 60/145 (41%)

Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
                  + G+++ +  ++  A++  E  +  +    +   +LG+ Y     +D+  E  
Sbjct: 6   IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELL 65

Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417
           + +L+  P+  +    LG+ Y    K D A  ++ K   ANP        LGV   + G 
Sbjct: 66  ERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR 125

Query: 418 ISLAIDAYEQCLKIDPDSRNAGQNR 442
              AID+++  L + P+     +  
Sbjct: 126 FDEAIDSFKIALGLRPNEGKVHRAI 150

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  119 bits (301), Expect = 3e-31
 Identities = 19/109 (17%), Positives = 40/109 (36%)

Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
           +        + G+ +       +AV   +              +LG+ Y   G +D   E
Sbjct: 4   DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63

Query: 390 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
           ++E+++A  P   +    LG+ Y       LA+    +  + +P + N 
Sbjct: 64  LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 77.9 bits (193), Expect = 8e-17
 Identities = 27/105 (25%), Positives = 36/105 (34%), Gaps = 3/105 (2%)

Query: 56  NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
                  K+  A+ L   V E +  N       G+ L        A DSF  A+ L P  
Sbjct: 84  LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143

Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
              H      Y+  GR  EA   + KA   D      +  LA+V 
Sbjct: 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA---SVELALVP 185

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 49.0 bits (118), Expect = 8e-07
 Identities = 9/48 (18%), Positives = 17/48 (35%)

Query: 395 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
           +  +      Y + G+ +  AG  S A+   EQ    D    +   + 
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHL 48

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  179 bits (456), Expect = 3e-50
 Identities = 69/373 (18%), Positives = 125/373 (33%), Gaps = 69/373 (18%)

Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
           G      G        +  A+          + L+ + + LG +     +    ++ ++ 
Sbjct: 16  GERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72

Query: 183 ALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------RPMYAEAYC 229
            L +          A A  NLG     L  +D A+ C ++  L+       +   A A  
Sbjct: 73  DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH-LDISRELNDKVGEARALY 131

Query: 230 NMGVIYKNRGD--------------------LESAIACYERCLAVSPNFEIAKNNMAIAL 269
           N+G +Y  +G                     L++A+  YE  L++       +     A 
Sbjct: 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG-DRAAQGRAF 190

Query: 270 TDLGTKVKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323
            +LG    L G+    V  +++ L              A  NLG AY  + +F+ A  +Y
Sbjct: 191 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250

Query: 324 ELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSL 371
           +               A++C +LG  Y    + +KA++ +   L+I      +    ++ 
Sbjct: 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC 310

Query: 372 NNLGVVYTVQGKMDAAAEMIEKAIA-------------ANPTYAEAYNNLGVLYRDAGSI 418
            +LG  YT  G  D A    EK +              A    ++    LG+ Y    SI
Sbjct: 311 WSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370

Query: 419 SLAIDAYEQCLKI 431
                  +  L  
Sbjct: 371 MSENTEIDSSLNG 383

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  118 bits (299), Expect = 6e-29
 Identities = 61/320 (19%), Positives = 99/320 (30%), Gaps = 96/320 (30%)

Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI----DPHYAPAYYNLGVVYSELMQYDTALG 212
            + L   G  L  +G+ + G+  +  A+++        +  Y  LG  Y  L  Y  AL 
Sbjct: 9   CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68

Query: 213 CYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
            +           ++   A+A  N+G   K  G+ + AI C +R L +S           
Sbjct: 69  YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS----------- 117

Query: 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326
                                   + L      A A+YNLG  Y    K        ++ 
Sbjct: 118 ------------------------RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVG 153

Query: 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386
                             + RD L  AV+ Y+  LS+                       
Sbjct: 154 --------------EFPEEVRDALQAAVDFYEENLSLV---------------------- 177

Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
                  A+        A+ NLG  +   G+   A+ A+EQ L I   ++  G       
Sbjct: 178 ------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI---AKEFGDKAAERR 228

Query: 447 NYINEGHDDKLFEAHRDWGK 466
            Y N G+      A+   G+
Sbjct: 229 AYSNLGN------AYIFLGE 242

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  173 bits (440), Expect = 5e-50
 Identities = 38/226 (16%), Positives = 65/226 (28%), Gaps = 10/226 (4%)

Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247
              +     L + Y     Y  A    E A    P    A+     IY+     + A   
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64

Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL--YYNWHYADAMYN 305
           + + L++ P+     NN    L              + +AY+ KAL          A  N
Sbjct: 65  FRQALSIKPDSAEINNNYGWFLCG------RLNRPAESMAYFDKALADPTYPTPYIANLN 118

Query: 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365
            G+   +  +F +A  + + +    P    A   L         L  A   ++   S   
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178

Query: 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411
                   LG  + +   +  A    E        +  +     VL
Sbjct: 179 VLQADDLLLG--WKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  170 bits (433), Expect = 4e-49
 Identities = 39/233 (16%), Positives = 80/233 (34%), Gaps = 12/233 (5%)

Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277
           A +    +     + + Y    D   A A  E  L   P  E+A    A     L     
Sbjct: 1   AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLK---- 56

Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVA-YGEMLKFDMAIVFYE--LAFHFNPHCA 334
                ++    +++AL      A+   N G    G + +   ++ +++  LA    P   
Sbjct: 57  ---VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPY 113

Query: 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394
            A  N G+    +     A    + +L+ +P F  +   L     + G++  A    +K 
Sbjct: 114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY 173

Query: 395 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
            +           LG  ++ A ++  A  AYE   ++  +   + + + +   
Sbjct: 174 QSRVEVLQADDLLLG--WKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLTG 224

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  142 bits (360), Expect = 7e-39
 Identities = 40/240 (16%), Positives = 80/240 (33%), Gaps = 19/240 (7%)

Query: 76  EKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135
           EK +          +        R A  S  +A+K DP+N  A      +Y+      +A
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKL-AGNTQDGIQKYYEALK--IDPHYAP 192
            ES+ +ALS  P         A +  + G  L        + +  + +AL     P    
Sbjct: 62  QESFRQALSIKPDS-------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYI 114

Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
           A  N G+  ++  Q+  A    +++   +P +  A+  +       G L  A   +++  
Sbjct: 115 ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQ 174

Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
           +     +     +           K+   +    A Y+       ++  +     V  G+
Sbjct: 175 SRVEVLQADDLLLGW---------KIAKALGNAQAAYEYEAQLQANFPYSEELQTVLTGQ 225

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  129 bits (327), Expect = 2e-34
 Identities = 45/214 (21%), Positives = 74/214 (34%), Gaps = 8/214 (3%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
           A        +  A A  E  L+ D  N  A + +    Q   +   A +SF +A+ + P 
Sbjct: 15  AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74

Query: 115 NACAHTHCGI-LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
           +A  + + G  L     R  E+   + KAL ADP+Y            + G      G  
Sbjct: 75  SAEINNNYGWFLCGRLNRPAESMAYFDKAL-ADPTYPTPYI----ANLNKGICSAKQGQF 129

Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
                    +L   P + PA+  L        Q   A   ++K      +       +G 
Sbjct: 130 GLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG- 188

Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
            +K    L +A A YE    +  NF  ++    +
Sbjct: 189 -WKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score =  165 bits (421), Expect = 2e-48
 Identities = 56/136 (41%), Positives = 79/136 (58%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
           A+A YNLG AY +   +D AI +Y+ A   +P  AEA  NLG  Y  + + D+A+E YQ 
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
           AL + P  +++  NLG  Y  QG  D A E  +KA+  +P  AEA+ NLG  Y   G   
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120

Query: 420 LAIDAYEQCLKIDPDS 435
            AI+ Y++ L++DP S
Sbjct: 121 EAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score =  143 bits (364), Expect = 2e-40
 Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 7/142 (4%)

Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
           AEA+ N+G  Y  +GD + AI  Y++ L + P    A  N+  A    G       D ++
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG-------DYDE 53

Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
            + YY+KAL  +   A+A YNLG AY +   +D AI +Y+ A   +P  AEA  NLG  Y
Sbjct: 54  AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113

Query: 345 KDRDNLDKAVECYQMALSIKPN 366
             + + D+A+E YQ AL + P 
Sbjct: 114 YKQGDYDEAIEYYQKALELDPR 135

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score =  126 bits (319), Expect = 3e-34
 Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 7/134 (5%)

Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
           LG +    G+  + I+ Y +AL++DP  A A+YNLG  Y +   YD A+  Y+KA    P
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66

Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
             AEA+ N+G  Y  +GD + AI  Y++ L + P    A  N+  A           GD 
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-------GDY 119

Query: 283 NQGVAYYKKALYYN 296
           ++ + YY+KAL  +
Sbjct: 120 DEAIEYYQKALELD 133

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score =  124 bits (315), Expect = 1e-33
 Identities = 51/142 (35%), Positives = 72/142 (50%), Gaps = 7/142 (4%)

Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
           A A  + G  Y  +G   EA E Y KAL  DP         A    +LG +    G+  +
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDE 53

Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
            I+ Y +AL++DP  A A+YNLG  Y +   YD A+  Y+KA    P  AEA+ N+G  Y
Sbjct: 54  AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113

Query: 236 KNRGDLESAIACYERCLAVSPN 257
             +GD + AI  Y++ L + P 
Sbjct: 114 YKQGDYDEAIEYYQKALELDPR 135

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 88.2 bits (220), Expect = 6e-21
 Identities = 42/162 (25%), Positives = 62/162 (38%), Gaps = 41/162 (25%)

Query: 56  NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
           N    +  + +A+  Y+  LE D  + EA    G     Q     A + + +A++LDP++
Sbjct: 9   NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68

Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
           A A  + G  Y  +G   EA E Y KAL                                
Sbjct: 69  AEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------------------- 97

Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
                     +DP  A A+YNLG  Y +   YD A+  Y+KA
Sbjct: 98  ----------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 77.4 bits (192), Expect = 3e-17
 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 34/105 (32%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
           AEA  NLG  Y  + + D+A+E YQ AL + P                            
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--------------------------- 33

Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
                   AEA+ NLG  Y   G    AI+ Y++ L++DP S  A
Sbjct: 34  -------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 47.0 bits (113), Expect = 1e-06
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
           AEA+ NLG  Y   G    AI+ Y++ L++DP S  A  N 
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 41

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
            N    +  + +A+  Y+  LE D  + EA    G     Q     A + + +A++LDP+
Sbjct: 76  GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135

Query: 115 N 115
           +
Sbjct: 136 S 136

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  175 bits (445), Expect = 4e-48
 Identities = 58/338 (17%), Positives = 107/338 (31%), Gaps = 26/338 (7%)

Query: 130 GRLVEAAESYHKALSADPSYKPAAECL------AIVLTDLGTSLKLAGNTQDGIQK---- 179
           GR    A+   +A       +   + L            +  + +   + Q+ ++K    
Sbjct: 31  GRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQ 90

Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDT-ALGCYEKAALERPMYAEAYCNMGVIYKNR 238
             E L      A A    G   +    Y   A     KA    P   EA+  +G +Y  +
Sbjct: 91  MEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK 150

Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE--GDINQGVAYYKKALYYN 296
           GD+ SA  C+   L    N   +  N+++ L  L T    E    +   V   K A+  +
Sbjct: 151 GDVTSAHTCFSGALTHCKNKV-SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209

Query: 297 WHYADAMYNLGVAYGEML--------KFDMAIVFYELAFHFN---PHCAEACNNLGVIYK 345
                + Y LG AY  +             A+  Y  A   +       +   N   ++K
Sbjct: 210 VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHK 269

Query: 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
             ++  +A+E +  A ++ P + +       +     ++ +  E   K            
Sbjct: 270 YEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGS 329

Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSR-NAGQNR 442
                L         +    +  L++ P S    G N 
Sbjct: 330 LRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPGVNS 367

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  168 bits (426), Expect = 1e-45
 Identities = 53/342 (15%), Positives = 110/342 (32%), Gaps = 28/342 (8%)

Query: 53  SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL-QMQNMGRLAFDSFSEAVKL 111
           +       + +    L   E VL       +A + KG  L    +    A    S+AVKL
Sbjct: 73  AGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL 132

Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG--TSLKL 169
           +P+   A    G +Y  +G +  A   +  AL+   +   + + L++VL  L   +  + 
Sbjct: 133 EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV-SLQNLSMVLRQLQTDSGDEH 191

Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY--------SELMQYDTALGCYEKAA--- 218
           + +  D +++   A+++D     ++Y LG  Y                AL  Y +A    
Sbjct: 192 SRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD 251

Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
            +     + + N   ++K       A+  + +  A+ P +   +      L  L      
Sbjct: 252 RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL------ 305

Query: 279 EGDINQGVAYYKK------ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332
              +   +    K                 +   G    +        +  +      P 
Sbjct: 306 -SRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPG 364

Query: 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
                  LG +       +K    + +  S  P ++  + N+
Sbjct: 365 VNSGTVVLGKVVFSLTTEEKVPFTFGLVDSDGPCYAVMVYNV 406

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  160 bits (405), Expect = 1e-42
 Identities = 40/332 (12%), Positives = 91/332 (27%), Gaps = 39/332 (11%)

Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-------QYDTALG 212
           +             +  +QK    +     +  +Y+    V            + +  L 
Sbjct: 30  MGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQ 89

Query: 213 CYEKAALERPMYAEAYCNMGVIYKNRGD-LESAIACYERCLAVSPNFEIAKNNMAIALTD 271
             E+      + A+A    G       D    A     + + + P    A N +      
Sbjct: 90  QMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK 149

Query: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM---------LKFDMAIVF 322
                   GD+      +  AL +  +   ++ NL +   ++              ++  
Sbjct: 150 K-------GDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201

Query: 323 YELAFHFNPHCAEACNNLGVIY--------KDRDNLDKAVECYQMALSIK---PNFSQSL 371
            +LA   +     +   LG  Y        ++     +A+  Y  A  +     +     
Sbjct: 202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261

Query: 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
            N   ++  +     A E   +A A +P + E       L      ++  +++     K 
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG---KT 318

Query: 432 DPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 463
            P    +    L   +    G       + + 
Sbjct: 319 KPKKLQSMLGSLRPAHLGPCGDGRYQSASGQK 350

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 34/184 (18%), Positives = 54/184 (29%), Gaps = 4/184 (2%)

Query: 51  ALSYANILRSRNKFVDALALYEIVLE---KDSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107
              Y N  ++      AL+ Y    +   K S N + H+ +    + +     A + FS+
Sbjct: 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283

Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
           A  LDP           L +   RL    ES  K                  L   G   
Sbjct: 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK-TKPKKLQSMLGSLRPAHLGPCGDGR 342

Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
             + + Q    +      + P        LG V   L   +     +     + P YA  
Sbjct: 343 YQSASGQKMTLELKPLSTLQPGVNSGTVVLGKVVFSLTTEEKVPFTFGLVDSDGPCYAVM 402

Query: 228 YCNM 231
             N+
Sbjct: 403 VYNV 406

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  152 bits (387), Expect = 8e-43
 Identities = 25/213 (11%), Positives = 63/213 (29%), Gaps = 26/213 (12%)

Query: 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283
             +            G    A++ + + +A++ +                          
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY--------------------- 41

Query: 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343
               Y+      +   +     L +AY +   +D A +FY+      P+  +       +
Sbjct: 42  ----YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM 97

Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM-DAAAEMIEKAIAANPTYA 402
              R     A+  Y+  L ++ +   +   LG  Y +  +      E   K +++     
Sbjct: 98  QVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ 157

Query: 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
            A    G+          A ++ ++ +   P +
Sbjct: 158 YARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  134 bits (338), Expect = 4e-36
 Identities = 29/239 (12%), Positives = 65/239 (27%), Gaps = 32/239 (13%)

Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
           Q+            + G+  +A   + + ++ +                           
Sbjct: 2   QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEM--------------------- 40

Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
                 +    K     +     L + Y +   YD A   Y++   + P   +       
Sbjct: 41  ----YYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96

Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
           +   RG  + A+  YE+ L +  +   A   +                  + +    K L
Sbjct: 97  MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA------EQEKKKLETDYKKL 150

Query: 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
                   A Y  G++     +++ A    +      P   EA   L  I +    +++
Sbjct: 151 SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  120 bits (302), Expect = 4e-31
 Identities = 31/175 (17%), Positives = 49/175 (28%), Gaps = 19/175 (10%)

Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA----------------CNNLGV 342
             D M     A  E  +   A+ ++      N    E                    L +
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
            YK   N DKA   Y+  L   PN    L     +   +G+   A  M EK +       
Sbjct: 63  AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122

Query: 403 EAYNNLGVLYRDAG-SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
            A   LG  Y          ++   + L      + A       ++ +     +K
Sbjct: 123 AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR--DGLSKLFTTRYEK 175

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  111 bits (280), Expect = 2e-28
 Identities = 29/207 (14%), Positives = 58/207 (28%), Gaps = 23/207 (11%)

Query: 52  LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK----------------GICLQMQ 95
           L   +      +   A++ +   +  +    E +                    +  +  
Sbjct: 8   LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67

Query: 96  NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
                A+  + E ++  P N      C  +    G+  +A   Y K L  +     A   
Sbjct: 68  RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIF 127

Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
           L           K        ++  Y+ L        A Y  G+      +Y+ A    +
Sbjct: 128 LGNYYYLTAEQEKKK------LETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQ 181

Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLE 242
           K  L  P   EA   +  I +   ++ 
Sbjct: 182 KVILRFP-STEAQKTLDKILRIEKEVN 207

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  148 bits (377), Expect = 3e-40
 Identities = 53/316 (16%), Positives = 94/316 (29%), Gaps = 70/316 (22%)

Query: 177 IQKYYEALKI------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA--ALER- 221
           +  ++                  P      +NL + Y+   +Y+ A+   ++A   LE+ 
Sbjct: 1   MHHHHHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT 60

Query: 222 -----PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNNMAIA 268
                P  A     + ++Y+++   + A       LA+         P      NN+A+ 
Sbjct: 61  SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL 120

Query: 269 LTDLGTKVKLEGDINQGVAYYKKAL------YYNWH--YADAMYNLGVAYGEMLKFDMAI 320
               G          +     K+AL          H   A  + NL +      K++   
Sbjct: 121 YGKRG-------KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE 173

Query: 321 VFYELAF----------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------ 364
            +Y+ A              P+ A+  NNL   Y  +    +A   Y+  L+        
Sbjct: 174 YYYQRALEIYQTKLGPDD--PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231

Query: 365 ---PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA------ANPTYAEAYNNLGVLYRDA 415
                      +       +GK        E           +PT      NLG LYR  
Sbjct: 232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ 291

Query: 416 GSISLAIDAYEQCLKI 431
           G    A    E  ++ 
Sbjct: 292 GKFEAAETLEEAAMRS 307

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  134 bits (340), Expect = 4e-35
 Identities = 57/320 (17%), Positives = 96/320 (30%), Gaps = 62/320 (19%)

Query: 125 LYKDEGRLVEAAESYHKALSAD-PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183
           ++            Y +    + P+           L +L       G  +  +    +A
Sbjct: 1   MHHHHHHSSGRENLYFQGGGYEIPA-------RLRTLHNLVIQYASQGRYEVAVPLCKQA 53

Query: 184 LKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALER-------PMYAEA 227
           L+          P  A     L +VY +  +Y  A      A A+         P  A  
Sbjct: 54  LEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAAT 113

Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNNMAIALTDLGTKVKLE 279
             N+ V+Y  RG  + A    +R L +         P+     NN+A+   + G      
Sbjct: 114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG------ 167

Query: 280 GDINQGVAYYKKAL------YYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAF---- 327
               +   YY++AL              A    NL   Y +  KF  A   Y+       
Sbjct: 168 -KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226

Query: 328 -----HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGV 376
                  +        +     + +          +     K      P  + +L NLG 
Sbjct: 227 EREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGA 286

Query: 377 VYTVQGKMDAAAEMIEKAIA 396
           +Y  QGK +AA  + E A+ 
Sbjct: 287 LYRRQGKFEAAETLEEAAMR 306

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  123 bits (311), Expect = 2e-31
 Identities = 55/289 (19%), Positives = 87/289 (30%), Gaps = 61/289 (21%)

Query: 123 GILYKDEGRLVEAAESYHKALSA--------DPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
            I Y  +GR   A     +AL           P        +A +L  L    +     +
Sbjct: 34  VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD-------VATMLNILALVYRDQNKYK 86

Query: 175 DGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------AL- 219
           D      +AL I         P  A    NL V+Y +  +Y  A    ++A       L 
Sbjct: 87  DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146

Query: 220 -ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNNMAIALT 270
            + P  A+   N+ ++ +N+G  E     Y+R L +         PN    KNN+A    
Sbjct: 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL 206

Query: 271 DLGTKVKLEGDINQGVAYYKKALYYNW---------HYADAMYNLGVAYGEMLKFDMAIV 321
             G          Q    YK+ L                    +         K      
Sbjct: 207 KQG-------KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259

Query: 322 FYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
           F E    +       P       NLG +Y+ +   + A    + A+  +
Sbjct: 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score =  139 bits (352), Expect = 6e-39
 Identities = 49/118 (41%), Positives = 68/118 (57%)

Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
            A+A YNLG AY +   +D AI +Y+ A   +P+ AEA  NLG  Y  + + D+A+E YQ
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67

Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
            AL + PN +++  NLG  Y  QG  D A E  +KA+  +P  AEA  NLG   +  G
Sbjct: 68  KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score =  127 bits (321), Expect = 1e-34
 Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 41/166 (24%)

Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
            A++    AEA+ N+G  Y  +GD + AI  Y++ L + PN                   
Sbjct: 1   GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------------------- 41

Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
                                  A+A YNLG AY +   +D AI +Y+ A   +P+ AEA
Sbjct: 42  ----------------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79

Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
             NLG  Y  + + D+A+E YQ AL + PN +++  NLG     QG
Sbjct: 80  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score =  125 bits (316), Expect = 5e-34
 Identities = 46/129 (35%), Positives = 67/129 (51%), Gaps = 8/129 (6%)

Query: 186 IDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
           +DP   A A+YNLG  Y +   YD A+  Y+KA    P  AEA+ N+G  Y  +GD + A
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62

Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304
           I  Y++ L + PN   A  N+  A           GD ++ + YY+KAL  + + A+A  
Sbjct: 63  IEYYQKALELDPNNAEAWYNLGNAYYKQ-------GDYDEAIEYYQKALELDPNNAEAKQ 115

Query: 305 NLGVAYGEM 313
           NLG A  + 
Sbjct: 116 NLGNAKQKQ 124

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score =  124 bits (314), Expect = 8e-34
 Identities = 45/109 (41%), Positives = 64/109 (58%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
           AEA  NLG  Y  + + D+A+E YQ AL + PN +++  NLG  Y  QG  D A E  +K
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
           A+  +P  AEA+ NLG  Y   G    AI+ Y++ L++DP++  A QN 
Sbjct: 69  ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score =  122 bits (310), Expect = 3e-33
 Identities = 42/111 (37%), Positives = 62/111 (55%)

Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
           LG +    G+  + I+ Y +AL++DP+ A A+YNLG  Y +   YD A+  Y+KA    P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
             AEA+ N+G  Y  +GD + AI  Y++ L + PN   AK N+  A    G
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 97.8 bits (245), Expect = 2e-24
 Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 41/159 (25%)

Query: 81  NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
           + EA    G     Q     A + + +A++LDP NA A  + G  Y  +G   EA E Y 
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67

Query: 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200
           KAL                                          +DP+ A A+YNLG  
Sbjct: 68  KALE-----------------------------------------LDPNNAEAWYNLGNA 86

Query: 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
           Y +   YD A+  Y+KA    P  AEA  N+G   + +G
Sbjct: 87  YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 84.4 bits (210), Expect = 1e-19
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 362 SIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
           ++ P N +++  NLG  Y  QG  D A E  +KA+  +P  AEA+ NLG  Y   G    
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61

Query: 421 AIDAYEQCLKIDPDSRNA 438
           AI+ Y++ L++DP++  A
Sbjct: 62  AIEYYQKALELDPNNAEA 79

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 72.0 bits (178), Expect = 2e-15
 Identities = 36/151 (23%), Positives = 51/151 (33%), Gaps = 45/151 (29%)

Query: 56  NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDP 113
           N    +  + +A+  Y+  LE D  N EA    G        G    A + + +A++LDP
Sbjct: 17  NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY--KQGDYDEAIEYYQKALELDP 74

Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
            NA A  + G  Y  +G   EA E Y KAL                              
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE----------------------------- 105

Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204
                       +DP+ A A  NLG    + 
Sbjct: 106 ------------LDPNNAEAKQNLGNAKQKQ 124

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  132 bits (335), Expect = 8e-35
 Identities = 48/288 (16%), Positives = 88/288 (30%), Gaps = 58/288 (20%)

Query: 193 AYYNLGVVYSELMQYDTALGCYEKA--ALER------PMYAEAYCNMGVIYKNRGDLESA 244
           + ++     S L+   +A+   ++A   LE+      P  A     + ++Y+++   + A
Sbjct: 3   SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA 62

Query: 245 IACYERCLAVS--------PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL--- 293
                  LA+         P      NN+A+     G          +     K+AL   
Sbjct: 63  AHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG-------KYKEAEPLCKRALEIR 115

Query: 294 ---YYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAF----------HFNPHCAEACN 338
                 +H   A  + NL +      K +    +Y  A              P+ A+  N
Sbjct: 116 EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD--PNVAKTKN 173

Query: 339 NLGVIYKDRDNLDKAVECYQMALSIK---------PNFSQSLNNLGVVYTVQGKMDAAAE 389
           NL   Y  +     A   Y+  L+            +      +       + K   +A 
Sbjct: 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP 233

Query: 390 MIEKAIA------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
             E           +PT      +LG LYR  G +  A    +   + 
Sbjct: 234 YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  131 bits (331), Expect = 3e-34
 Identities = 53/288 (18%), Positives = 90/288 (31%), Gaps = 62/288 (21%)

Query: 163 LGTSLKLA------GNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYD 208
           +G+S                +    +AL+          P  A     L +VY +  +Y 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 60

Query: 209 TALGCYEKAALER---------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS---- 255
            A      A L           P  A    N+ V+Y  RG  + A    +R L +     
Sbjct: 61  EAAHLLNDA-LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119

Query: 256 ----PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--------HYADAM 303
               P+     NN+A+   + G          +   YY++AL            + A   
Sbjct: 120 GKFHPDVAKQLNNLALLCQNQG-------KAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172

Query: 304 YNLGVAYGEMLKFDMAIVFYELAFHF---------NPHCAEACNNLGVIYKDRDNLDKAV 354
            NL   Y +  K+  A   Y+              N        +     + +D    + 
Sbjct: 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA 232

Query: 355 ECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
              +     K      P  + +L +LG +Y  QGK++AA  + + A  
Sbjct: 233 PYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  114 bits (289), Expect = 1e-28
 Identities = 51/295 (17%), Positives = 82/295 (27%), Gaps = 64/295 (21%)

Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSA--------DPSYKPAAECLAIVLTDLGTSLKL 169
           +H H             A     +AL           P         A +L  L    + 
Sbjct: 4   SHHH-HHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDV-------ATMLNILALVYRD 55

Query: 170 AGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
               ++      +AL I         P  A    NL V+Y +  +Y  A    ++A LE 
Sbjct: 56  QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA-LEI 114

Query: 222 ---------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNN 264
                    P  A+   N+ ++ +N+G  E     Y R L +         PN    KNN
Sbjct: 115 REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174

Query: 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNW---------HYADAMYNLGVAYGEMLK 315
           +A      G               YK+ L                    +         K
Sbjct: 175 LASCYLKQG-------KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK 227

Query: 316 FDMAIVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
              +  + E    +       P       +LG +Y+ +  L+ A      A   +
Sbjct: 228 RRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score =  129 bits (326), Expect = 7e-33
 Identities = 46/317 (14%), Positives = 98/317 (30%), Gaps = 37/317 (11%)

Query: 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA---------------ALER 221
           +++  + ++ D      Y  +   +  ++ Y      Y                   L  
Sbjct: 38  VEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTG 97

Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN----FEIAK--NNMAIALTDLGTK 275
            +   +    G+   ++ +   AI  Y       P      E A+    +A A   +   
Sbjct: 98  LLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQT 157

Query: 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHF 329
                 I Q +  Y+    Y+     +++ +   Y +   +D A+   E A         
Sbjct: 158 HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN 217

Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-----PNFSQSLNNLGVVYTVQGKM 384
           +   A +  N+   Y    +   AVE +Q A  +          + L  L       G+ 
Sbjct: 218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQT 277

Query: 385 DAAAEMIEKAIA-----ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439
             A + IE+ +      ++  Y E +  L  +Y++        D      K +  +    
Sbjct: 278 QKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEA 337

Query: 440 QNRLLAMNYINEGHDDK 456
             R  A  + +  H ++
Sbjct: 338 CARSAAAVFESSCHFEQ 354

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score =  128 bits (323), Expect = 2e-32
 Identities = 39/274 (14%), Positives = 84/274 (30%), Gaps = 25/274 (9%)

Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
                 +    G+   D+   VEA   Y +A    P      E  A     +  +     
Sbjct: 97  GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE-KAEFHFKVAEAYYHMK 155

Query: 172 NTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------A 218
            T   +    +AL I             + + +   Y +   YD AL   E A       
Sbjct: 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215

Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
                 A +  N+   Y   GD + A+  +++   VS   E   + +   L  L   +  
Sbjct: 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR--EKVPDLLPKVLFGLSWTLCK 273

Query: 279 EGDINQGVAYYKKAL--------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
            G   +   + ++ L         +       +  +     +  K    + ++E   + +
Sbjct: 274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE-KKNLH 332

Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
            +      +   +++   + ++A   Y+  L  +
Sbjct: 333 AYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score =  123 bits (310), Expect = 1e-30
 Identities = 32/286 (11%), Positives = 72/286 (25%), Gaps = 60/286 (20%)

Query: 171 GNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------- 217
               + I  Y EA K       D   A  ++ +   Y  + Q   ++    +A       
Sbjct: 115 KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174

Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277
            L      ++   +   Y +    + A+   E  L ++                      
Sbjct: 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA---------------------- 212

Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF-----HFNPH 332
                          +  +   A ++ N+  +Y       MA+  ++ A           
Sbjct: 213 -------------MDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259

Query: 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIK-----PNFSQSLNNLGVVYTVQGKMDAA 387
             +    L           KA +  +  L          + +    L  VY         
Sbjct: 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319

Query: 388 AEMIE--KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
            +++   +    +        +   ++  +     A   Y + LK 
Sbjct: 320 HDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 98.0 bits (244), Expect = 4e-22
 Identities = 45/318 (14%), Positives = 88/318 (27%), Gaps = 66/318 (20%)

Query: 206 QYDTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
               A     +         E       Y  M   ++   D       Y     V+   E
Sbjct: 27  SVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86

Query: 260 IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319
             +                +  +   + YY              +  G+   +  ++  A
Sbjct: 87  TIE--------------TPQKKLTGLLKYY----SL--------FFRGMYEFDQKEYVEA 120

Query: 320 IVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPN 366
           I +Y  A             AE    +   Y        ++     AL I          
Sbjct: 121 IGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180

Query: 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIA------ANPTYAEAYNNLGVLYRDAGSISL 420
             QSL  +   Y      D A   +E A+        +   A +  N+   Y  +G   +
Sbjct: 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM 240

Query: 421 AIDAYEQCLKIDPDSRNAGQNRLL---------------AMNYINEGHDDKLFEAHRDWG 465
           A++ +++  K+  +       ++L               A  +I EG D     +H+ + 
Sbjct: 241 AVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300

Query: 466 KRFMRLYSQYTSWDNTKD 483
           + F+ L + Y    + + 
Sbjct: 301 ELFLFLQAVYKETVDERK 318

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 96.4 bits (240), Expect = 1e-21
 Identities = 33/297 (11%), Positives = 71/297 (23%), Gaps = 61/297 (20%)

Query: 52  LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL----------- 100
                    + ++V+A+  Y    ++    V   I K        +              
Sbjct: 105 FFRGMYEFDQKEYVEAIGYYREAEKE-LPFVSDDIEKAEFHF--KVAEAYYHMKQTHVSM 161

Query: 101 -----AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
                A D +        +   +       Y D     +A      AL            
Sbjct: 162 YHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL------------ 209

Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
                                  +    ++ D   A +  N+   Y        A+  ++
Sbjct: 210 -----------------------ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246

Query: 216 KA-----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN-NMAIAL 269
           KA          +  +    +       G  + A    E  L             + + L
Sbjct: 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFL 306

Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326
             +  +   E  I+  ++Y++K   +  +      +    +     F+ A  FY   
Sbjct: 307 QAVYKETVDERKIHDLLSYFEKKNLHA-YIEACARSAAAVFESSCHFEQAAAFYRKV 362

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score =  128 bits (322), Expect = 3e-32
 Identities = 42/274 (15%), Positives = 85/274 (31%), Gaps = 24/274 (8%)

Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
                  +   G+   D+   + A + + KA S     K   E  A     +  S     
Sbjct: 99  GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIE-KAEFFFKMSESYYYMK 157

Query: 172 NTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------A 218
            T   +    +A +I       +      +      + +L QY+ A+  ++KA       
Sbjct: 158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE 217

Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
            +  +      N+G+   ++   E AI  ++R +AV         ++  A   +      
Sbjct: 218 KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN-ILPSLPQAYFLITQIHYK 276

Query: 279 EGDINQGVAYYKKAL-----YYNWHYADAMYNLGVAY---GEMLKFDMAIVFYELAFHFN 330
            G I++   Y+ K +       +  Y      L   Y    +         F E      
Sbjct: 277 LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLY 335

Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
               +   ++   Y +R N  KA   +     ++
Sbjct: 336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score =  113 bits (284), Expect = 9e-29
 Identities = 32/199 (16%), Positives = 59/199 (29%), Gaps = 41/199 (20%)

Query: 171 GNTQDGIQKYYEAL----KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
           G      + +  AL     +   ++   +N+G +Y+ L     A   + ++       A 
Sbjct: 13  GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 72

Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286
           AY   G++Y      + AI   +  L                              NQ +
Sbjct: 73  AYFQRGMLYYQTEKYDLAIKDLKEALIQLRG-------------------------NQLI 107

Query: 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346
            Y    L +     + +YN+   Y +  ++  A     LA                    
Sbjct: 108 DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE------------PR 155

Query: 347 RDNLDKAVECYQMALSIKP 365
              +DKA+EC       +P
Sbjct: 156 HSKIDKAMECVWKQKLYEP 174

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score =  108 bits (272), Expect = 4e-27
 Identities = 24/176 (13%), Positives = 63/176 (35%), Gaps = 21/176 (11%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
           A +++N GV   +   +  A+  +          +  C N+G +Y    N+ +A + +  
Sbjct: 6   AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTR 62

Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT----------------YAE 403
           +++   + + +    G++Y    K D A + +++A+                       E
Sbjct: 63  SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE 122

Query: 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 459
              N+  +Y        A +       +  + R++  ++  AM  + +    +   
Sbjct: 123 VLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK--AMECVWKQKLYEPVV 176

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 93.2 bits (232), Expect = 7e-22
 Identities = 24/174 (13%), Positives = 64/174 (36%), Gaps = 26/174 (14%)

Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
           +    A +  + G+L  D+     A +++         +       + +  ++G    + 
Sbjct: 1   MSLVEAISLWNEGVLAADKKDWKGALDAFSAV---QDPH-------SRICFNIGCMYTIL 50

Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE---------- 220
            N  +  + +  ++  D H A AY+  G++Y +  +YD A+   ++A ++          
Sbjct: 51  KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 110

Query: 221 ------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
                 +    E   N+  +Y  + + + A        ++      +K + A+ 
Sbjct: 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 164

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 92.5 bits (230), Expect = 1e-21
 Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 11/128 (8%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
           A +  N GV+  D+ +   A++ +    +++   S+   N+G +YT+   M  A +   +
Sbjct: 6   AISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTR 62

Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
           +I  +   A AY   G+LY       LAI   ++ L     ++         ++Y   G 
Sbjct: 63  SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ--------LIDYKILGL 114

Query: 454 DDKLFEAH 461
             KLF   
Sbjct: 115 QFKLFACE 122

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score =  107 bits (271), Expect = 2e-28
 Identities = 35/83 (42%), Positives = 47/83 (56%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
           AEA  NLG  Y  + + D+A+E YQ AL + PN +++  NLG  Y  QG  D A E  +K
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 394 AIAANPTYAEAYNNLGVLYRDAG 416
           A+  +P  AEA  NLG   +  G
Sbjct: 69  ALELDPNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score =  104 bits (262), Expect = 3e-27
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 186 IDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
           +DP   A A+YNLG  Y +   YD A+  Y+KA    P  AEA+ N+G  Y  +GD + A
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62

Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLG 273
           I  Y++ L + PN   AK N+  A    G
Sbjct: 63  IEYYQKALELDPNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 99.0 bits (248), Expect = 3e-25
 Identities = 35/84 (41%), Positives = 50/84 (59%)

Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
            A+A YNLG AY +   +D AI +Y+ A   +P+ AEA  NLG  Y  + + D+A+E YQ
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67

Query: 359 MALSIKPNFSQSLNNLGVVYTVQG 382
            AL + PN +++  NLG     QG
Sbjct: 68  KALELDPNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 91.7 bits (229), Expect = 1e-22
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
            A++    AEA+ N+G  Y  +GD + AI  Y++ L + PN   A  N+  A    G   
Sbjct: 1   GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG--- 57

Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
             +  I     YY+KAL  + + A+A  NLG A  +
Sbjct: 58  DYDEAI----EYYQKALELDPNNAEAKQNLGNAKQK 89

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 85.1 bits (212), Expect = 2e-20
 Identities = 29/77 (37%), Positives = 44/77 (57%)

Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
           LG +    G+  + I+ Y +AL++DP+ A A+YNLG  Y +   YD A+  Y+KA    P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 223 MYAEAYCNMGVIYKNRG 239
             AEA  N+G   + +G
Sbjct: 75  NNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 84.8 bits (211), Expect = 3e-20
 Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 362 SIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
           ++ P N +++  NLG  Y  QG  D A E  +KA+  +P  AEA+ NLG  Y   G    
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61

Query: 421 AIDAYEQCLKIDPDSRNAGQNR 442
           AI+ Y++ L++DP++  A QN 
Sbjct: 62  AIEYYQKALELDPNNAEAKQNL 83

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 60.5 bits (148), Expect = 9e-12
 Identities = 29/123 (23%), Positives = 39/123 (31%), Gaps = 41/123 (33%)

Query: 82  VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHK 141
            EA    G     Q     A + + +A++LDP NA A  + G  Y  +G   EA E Y K
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201
           AL                                          +DP+ A A  NLG   
Sbjct: 69  ALE-----------------------------------------LDPNNAEAKQNLGNAK 87

Query: 202 SEL 204
            + 
Sbjct: 88  QKQ 90

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 43.5 bits (104), Expect = 8e-06
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 56  NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDP 113
           N    +  + +A+  Y+  LE D  N EA    G        G    A + + +A++LDP
Sbjct: 17  NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKALELDP 74

Query: 114 QNACAHTHCGILYKDEG 130
            NA A  + G   + +G
Sbjct: 75  NNAEAKQNLGNAKQKQG 91

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score =  109 bits (275), Expect = 1e-27
 Identities = 29/219 (13%), Positives = 64/219 (29%), Gaps = 44/219 (20%)

Query: 179 KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------RPMYAEAYCNM 231
           +    L      + A + LG VY+ + ++D A   ++    +             A   +
Sbjct: 14  QAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQAL-QQQAQKSGDHTAEHRALHQV 72

Query: 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
           G++ +  G+ ++A  C+     +  +        +    ++ T     GD+      Y+K
Sbjct: 73  GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132

Query: 292 ALYYNWHYADAMY-NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350
           +L                                         A A   LG + +   NL
Sbjct: 133 SL--------VYAQQADDQVAI---------------------ACAFRGLGDLAQQEKNL 163

Query: 351 DKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGK 383
            +A + +  A  I          ++ +  L  +      
Sbjct: 164 LEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 98.1 bits (245), Expect = 1e-23
 Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 22/170 (12%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKA 353
           + A + LG  Y  M +FD A   ++           +     A + +G++ +   N D A
Sbjct: 26  SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85

Query: 354 VECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPT 400
             C+     +           S +   +  V    G +  A +  EK++           
Sbjct: 86  RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145

Query: 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450
            A A+  LG L +   ++  A   + +   I         +  +      
Sbjct: 146 IACAFRGLGDLAQQEKNLLEAQQHWLRARDI---FAELEDSEAVNELMTR 192

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 89.3 bits (222), Expect = 1e-20
 Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 22/146 (15%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAA 387
           + A   LG +Y   D  D+A   +Q                ++L+ +G+V  + G  DAA
Sbjct: 26  SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85

Query: 388 AEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
                +               +     +  +    G ++ A   YE+ L     ++ A  
Sbjct: 86  RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY---AQQADD 142

Query: 441 NRLLAMNYINEGHDDKLFEAHRDWGK 466
              +A  +   G      +  +    
Sbjct: 143 QVAIACAFRGLG------DLAQQEKN 162

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 88.5 bits (220), Expect = 3e-20
 Identities = 29/182 (15%), Positives = 53/182 (29%), Gaps = 17/182 (9%)

Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
              +      + A    G +Y    R  EA  S+                    L  +G 
Sbjct: 16  QALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA-EHRALHQVGM 74

Query: 166 SLKLAGNTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
             ++AGN     + + E  ++           +   Y +  V         A   YEK +
Sbjct: 75  VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK-S 133

Query: 219 LE-------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271
           L        +   A A+  +G + +   +L  A   + R   +    E     +   +T 
Sbjct: 134 LVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE-DSEAVNELMTR 192

Query: 272 LG 273
           L 
Sbjct: 193 LN 194

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 24/200 (12%), Positives = 57/200 (28%), Gaps = 44/200 (22%)

Query: 55  ANILRSRNKFVDALALYEIVLE--KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
             +    ++F +A A ++ + +  + SG+   H  +   L    +               
Sbjct: 33  GYVYAFMDRFDEARASFQALQQQAQKSGD---HTAEHRAL--HQV--------------- 72

Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
                     G++ +  G    A   + +      S        +    ++ T     G+
Sbjct: 73  ----------GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD 122

Query: 173 TQDGIQKYYEALKI-----DPHY-APAYYNLGVVYSELMQYDTALGCYEKA------ALE 220
                Q+Y ++L       D    A A+  LG +  +      A   + +A        +
Sbjct: 123 LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED 182

Query: 221 RPMYAEAYCNMGVIYKNRGD 240
                E    +  +  +   
Sbjct: 183 SEAVNELMTRLNGLEHHHHH 202

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 22/128 (17%)

Query: 352 KAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NP 399
           +A +                  S +   LG VY    + D A    +           + 
Sbjct: 4   EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63

Query: 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL-LAMNYINEGHDDKLF 458
               A + +G++ R AG+   A   + +  ++     +  ++ L  + N           
Sbjct: 64  AEHRALHQVGMVERMAGNWDAARRCFLEEREL---LASLPEDPLAASANAYEVA------ 114

Query: 459 EAHRDWGK 466
                +G 
Sbjct: 115 TVALHFGD 122

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score =  106 bits (266), Expect = 8e-27
 Identities = 34/150 (22%), Positives = 55/150 (36%), Gaps = 18/150 (12%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKA 353
             A  NLG  +  +  F  A++ +E        F        A +NLG  Y      + A
Sbjct: 9   GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68

Query: 354 VECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAANPTY 401
            E Y+  L +      +   +QS  +LG  YT+    + A +   K       +      
Sbjct: 69  SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128

Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
             A  +LG  Y   G+   A+   E+ L+I
Sbjct: 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 158

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score =  102 bits (258), Expect = 9e-26
 Identities = 35/186 (18%), Positives = 61/186 (32%), Gaps = 47/186 (25%)

Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESA 244
             A+ NLG  +  L  +  A+  +E+         ++     AY N+G  Y   G+ E+A
Sbjct: 9   GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68

Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304
              Y++ L +                                    + L      A + Y
Sbjct: 69  SEYYKKTLLL-----------------------------------ARQLKDRAVEAQSCY 93

Query: 305 NLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
           +LG  Y  +  ++ AI ++                  AC +LG  Y    N D+A+   +
Sbjct: 94  SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153

Query: 359 MALSIK 364
             L I 
Sbjct: 154 KHLEIS 159

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score =  100 bits (252), Expect = 6e-25
 Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 47/189 (24%)

Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
            R     A+ N+G  +   G+   A+  +E+ L ++                        
Sbjct: 4   SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA------------------------ 39

Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHC 333
                      K          A  NLG AY  + +F+ A  +Y+               
Sbjct: 40  -----------KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAA 387
           A++C +LG  Y    + +KA++ +   L+I      +    ++  +LG  YT  G  D A
Sbjct: 89  AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148

Query: 388 AEMIEKAIA 396
               EK + 
Sbjct: 149 MHFAEKHLE 157

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 84.1 bits (209), Expect = 4e-19
 Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 15/153 (9%)

Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
             A  + G  +   G   +A  ++ + L     +        I  ++LG +    G  + 
Sbjct: 9   GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERIAYSNLGNAYIFLGEFET 67

Query: 176 GIQKYYEALKID------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------RP 222
             + Y + L +          A + Y+LG  Y+ L  Y+ A+  + K  L        R 
Sbjct: 68  ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK-HLAIAQELKDRI 126

Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255
               A  ++G  Y   G+ + A+   E+ L +S
Sbjct: 127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score =  111 bits (279), Expect = 1e-26
 Identities = 33/271 (12%), Positives = 77/271 (28%), Gaps = 18/271 (6%)

Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
             + + Y     + +     E A       + ++       +   + L  L        D
Sbjct: 94  DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK------D 147

Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
           +++ + Y    +          ++  V    +      + F     + +     A  +  
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207

Query: 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV------YTVQGKMDAAAEMIEKAI 395
            + ++    D  ++     L      +   N    V      Y  +  ++   +   + I
Sbjct: 208 WVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 267

Query: 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDD 455
              P    A+N L  + +D G +S   +   Q L + P   +      L   Y +   + 
Sbjct: 268 KLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQ 326

Query: 456 KLFEAHRDWGKRFMRLYSQYTSWDNTKDPER 486
              +   D   + + L          KD  R
Sbjct: 327 C--DNKEDILNKALEL---CEILAKEKDTIR 352

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 99.4 bits (247), Expect = 1e-22
 Identities = 28/263 (10%), Positives = 71/263 (26%), Gaps = 19/263 (7%)

Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
            +    +    + +   + + + R   A +    A+  + +         ++L  L   L
Sbjct: 89  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148

Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
                    +      ++  P     +++  V+   L      L        +      A
Sbjct: 149 HEE------MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202

Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287
           + +   + +     ++ +   ++ L          N     +++          + + V 
Sbjct: 203 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT-GYNDRAVLEREVQ 261

Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYK 345
           Y  + +    H   A   L     +                  P          L  IY+
Sbjct: 262 YTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 320

Query: 346 DR---------DNLDKAVECYQM 359
           D          D L+KA+E  ++
Sbjct: 321 DMLENQCDNKEDILNKALELCEI 343

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 90.9 bits (225), Expect = 9e-20
 Identities = 23/187 (12%), Positives = 57/187 (30%), Gaps = 1/187 (0%)

Query: 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNL 350
            + Y+  + D             + + A      A   N       +   V+ K  + +L
Sbjct: 89  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148

Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
            + +      +  +P   Q  ++  V+           E I   +  +     A+ +   
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208

Query: 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMR 470
           + ++       +   +Q LK D  + +    R   ++     +D  + E    +    ++
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268

Query: 471 LYSQYTS 477
           L     S
Sbjct: 269 LVPHNES 275

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 80.9 bits (199), Expect = 2e-16
 Identities = 19/192 (9%), Positives = 58/192 (30%), Gaps = 6/192 (3%)

Query: 66  DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
           + +     ++E+   N +    + + ++         +  ++ +  D +N  A  H   +
Sbjct: 150 EEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV 209

Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
            ++        +   + L  D            V+++           +  +Q   E +K
Sbjct: 210 IQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT-GYNDRAVLEREVQYTLEMIK 268

Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI----YKNRGDL 241
           + PH   A+  L  +  +            +    +P ++  Y    ++           
Sbjct: 269 LVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327

Query: 242 ESAIACYERCLA 253
           ++      + L 
Sbjct: 328 DNKEDILNKALE 339

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score =  104 bits (260), Expect = 1e-26
 Identities = 18/104 (17%), Positives = 38/104 (36%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
            +     G++  ++     A + +E      P   EA  +LG+   + +    A+     
Sbjct: 17  HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76

Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
           A  + P        L V +T +   +AA   +   + + P Y +
Sbjct: 77  ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 92.9 bits (231), Expect = 1e-22
 Identities = 18/97 (18%), Positives = 37/97 (38%)

Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
            G S+    N  +    +    + +P    A+ +LG+  +E  +   A+     A +  P
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
                +  + V + N  +  +A+A     L   P +E
Sbjct: 83  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 91.0 bits (226), Expect = 4e-22
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 1/106 (0%)

Query: 330 NPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388
           NP+   E     G+      NL +A   ++     +P   ++  +LG+      K   A 
Sbjct: 12  NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 71

Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
             +  A   +P     +  L V + +  + + A+ +    L   P 
Sbjct: 72  IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 88.7 bits (220), Expect = 3e-21
 Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 7/111 (6%)

Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
                  G+   +L     A   +E    + P   EA+ ++G+          AI     
Sbjct: 17  HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76

Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301
              + P        +A++ T+       E + N  +A  +  L     Y  
Sbjct: 77  ARMLDPKDIAVHAALAVSHTN-------EHNANAALASLRAWLLSQPQYEQ 120

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 88.3 bits (219), Expect = 4e-21
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432
             G+       +  AA   E      P   EA+ +LG+   +     LAI A      +D
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 433 PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 464
           P          LA+++ NE + +    + R W
Sbjct: 82  PKDIAVHAA--LAVSHTNEHNANAALASLRAW 111

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 83.3 bits (206), Expect = 2e-19
 Identities = 17/98 (17%), Positives = 36/98 (36%)

Query: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
            G  +    ++ +    ++          +A  +LG+   E  K  +AI+    A   +P
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369
                   L V + +  N + A+   +  L  +P + Q
Sbjct: 83  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 79.8 bits (197), Expect = 4e-18
 Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 7/104 (6%)

Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
           G+       L EAA ++      +P  + A          LG +          I     
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQKEPEREEA-------WRSLGLTQAENEKDGLAIIALNH 76

Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
           A  +DP     +  L V ++     + AL       L +P Y +
Sbjct: 77  ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 78.6 bits (194), Expect = 1e-17
 Identities = 20/104 (19%), Positives = 38/104 (36%)

Query: 47  EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
             ++ +     +       +A   +E V +K+    EA    G+         LA  + +
Sbjct: 16  YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75

Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150
            A  LDP++   H    + + +E     A  S    L + P Y+
Sbjct: 76  HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 7/111 (6%)

Query: 81  NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
             E  + +G+ +        A  +F    + +P+   A    G+   +  +   A  + +
Sbjct: 16  YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75

Query: 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191
            A   DP               L  S     N    +      L   P Y 
Sbjct: 76  HARMLDPKDIAV-------HAALAVSHTNEHNANAALASLRAWLLSQPQYE 119

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score =  107 bits (267), Expect = 7e-26
 Identities = 35/269 (13%), Positives = 78/269 (28%), Gaps = 17/269 (6%)

Query: 171 GNTQDGIQKYYEALKIDPHYA-PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
           G+ Q  I +        P         L   Y    +Y   L   + ++       +A  
Sbjct: 13  GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAP---ELQAVR 69

Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289
                  +    ++ +A  +R ++ S +           L    +    + + +  +   
Sbjct: 70  MFAEYLASHSRRDAIVAELDREMSRSVD-----VTNTTFLLMAASIYFYDQNPDAALR-- 122

Query: 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI--YKDR 347
                +     + M        ++ + D+A    +     +            +      
Sbjct: 123 ---TLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGG 179

Query: 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
           + L  A   +Q            LN     +  QG+ +AA  ++++A+  +  + E   N
Sbjct: 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239

Query: 408 LGVLYRDAGSISLAIDAYEQCLK-IDPDS 435
           L VL +  G      + Y   LK      
Sbjct: 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 78.6 bits (193), Expect = 3e-16
 Identities = 29/263 (11%), Positives = 63/263 (23%), Gaps = 22/263 (8%)

Query: 206 QYDTALGCYEKAALERPMYA-EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264
            Y   +   ++     P    E    +   Y  +      +   +           +   
Sbjct: 14  SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------SSAP 63

Query: 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL--GVAYGEMLKFDMAIVF 322
              A+      +      +  VA   + +  +    +  + L     Y      D A+  
Sbjct: 64  ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT 123

Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
                       E       I    D LD A +  +       + + +      V    G
Sbjct: 124 LH-----QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG 178

Query: 383 --KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
             K+  A  + ++            N     +   G    A    ++ L  D        
Sbjct: 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238

Query: 441 NRLLAMNYINEGHDDKLFEAHRD 463
           N  L +   + G   ++   +  
Sbjct: 239 N--LVVLSQHLGKPPEVTNRYLS 259

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 70.9 bits (173), Expect = 1e-13
 Identities = 24/171 (14%), Positives = 40/171 (23%), Gaps = 14/171 (8%)

Query: 52  LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
           L  A+I         AL            ++E        L   +   LA     +    
Sbjct: 105 LMAASIYFYDQNPDAALRTLH-----QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159

Query: 112 DPQNACAHTHCGI--LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
           D              L     +L +A   + +                ++L         
Sbjct: 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT-------LLLLNGQAACHMA 212

Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
            G  +       EAL  D  +     NL V+   L +       Y     +
Sbjct: 213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 66.7 bits (162), Expect = 4e-12
 Identities = 20/143 (13%), Positives = 38/143 (26%), Gaps = 10/143 (6%)

Query: 52  LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAV 109
                IL   ++   A    + + ++D       +            +L  A+  F E  
Sbjct: 134 AMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA 193

Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
                           +  +GR   A     +AL  D  +          L +L    + 
Sbjct: 194 DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH-------PETLINLVVLSQH 246

Query: 170 AGNTQDGIQKYYEALK-IDPHYA 191
            G   +   +Y   LK     + 
Sbjct: 247 LGKPPEVTNRYLSQLKDAHRSHP 269

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 62.1 bits (150), Expect = 1e-10
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 1/100 (1%)

Query: 51  ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
           A ++ ++     K  DA  +++ + +K S  +    G+  C   Q     A     EA+ 
Sbjct: 169 ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228

Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESY-HKALSADPSY 149
            D  +     +  +L +  G+  E    Y  +   A  S+
Sbjct: 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score =  104 bits (260), Expect = 9e-25
 Identities = 49/266 (18%), Positives = 79/266 (29%), Gaps = 47/266 (17%)

Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
           A  Y    V +KN   LE A   Y +      N      + A A    G  +K    + +
Sbjct: 36  ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS-LFHAAKAFEQAGMMLKDLQRMPE 94

Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
            V Y +KA                 Y E    D A              A A +  G + 
Sbjct: 95  AVQYIEKASVM--------------YVENGTPDTA--------------AMALDRAGKLM 126

Query: 345 KDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
           +  D L KAV  YQ A ++          ++ +     +   Q K D AA  ++K  +  
Sbjct: 127 EPLD-LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185

Query: 399 ------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID--PDSRNAGQNRLLAMNYIN 450
                 PT  +      ++         A     +   I     S +      L     +
Sbjct: 186 KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLL-QAYD 244

Query: 451 EGHDDKLFEAHRDWGKRFMRLYSQYT 476
           E  +++L    R        + + Y 
Sbjct: 245 EQDEEQLLRVCRS--PLVTYMDNDYA 268

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 87.6 bits (217), Expect = 5e-19
 Identities = 51/294 (17%), Positives = 83/294 (28%), Gaps = 71/294 (24%)

Query: 130 GRLVEAAESYHKA--------LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181
            ++ EA E   KA        +   P Y  AA            + K A   +     Y 
Sbjct: 5   QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEY----AKAAVAFKNAKQLEQAKDAYL 60

Query: 182 EALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA-----LERPMYAEAYCN 230
           +  +         H A A+   G++  +L +   A+   EKA+        P  A    +
Sbjct: 61  QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALD 120

Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
                    DL  A+  Y++  AV  N E                               
Sbjct: 121 RAGKLMEPLDLSKAVHLYQQAAAVFENEE------------------------------- 149

Query: 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIY 344
                    A+ +           KFD A    +            P C + C    ++ 
Sbjct: 150 ----RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205

Query: 345 KDRDNLDKAVECYQMALSIKPNFSQS-----LNNLGVVYTVQGKMDAAAEMIEK 393
             R +   A +C + + SI P FS S     L +L   Y  +   +    +   
Sbjct: 206 LHRADYVAAQKCVRESYSI-PGFSGSEDCAALEDLLQAYD-EQDEEQLLRVCRS 257

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 82.6 bits (204), Expect = 2e-17
 Identities = 29/206 (14%), Positives = 63/206 (30%), Gaps = 17/206 (8%)

Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
            + +K+  +L +A ++Y +   A  + +      A      G  LK      + +Q   +
Sbjct: 43  AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHA-AKAFEQAGMMLKDLQRMPEAVQYIEK 101

Query: 183 ALKI-----DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCNM 231
           A  +      P  A    +      E +    A+  Y++AA            AE     
Sbjct: 102 ASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161

Query: 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
             +   +   + A A  ++  ++    E                     D        ++
Sbjct: 162 SRLLVRQQKFDEAAASLQKEKSMYKEME-NYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220

Query: 292 AL-YYNWHYAD---AMYNLGVAYGEM 313
           +     +  ++   A+ +L  AY E 
Sbjct: 221 SYSIPGFSGSEDCAALEDLLQAYDEQ 246

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 97.9 bits (245), Expect = 1e-24
 Identities = 14/107 (13%), Positives = 34/107 (31%), Gaps = 2/107 (1%)

Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
                E     GV+  D  N  ++++ ++ A+ + P  S+     G       + + A +
Sbjct: 2   VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61

Query: 390 MIEKAIA--ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
                I    +    + +       R      +  +  E   K++  
Sbjct: 62  CYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 97.9 bits (245), Expect = 1e-24
 Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 9/113 (7%)

Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245
           +       YY  GV+  +   Y  ++  +EKA    P  ++ +   G    N    E A+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 246 ACYERCLAVSPNFEIAK--NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296
            CY   + V  +          A AL  +      E +        +      
Sbjct: 61  DCYNYVINVIEDEYNKDVWAAKADALRYIE---GKEVEA----EIAEARAKLE 106

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 90.2 bits (225), Expect = 6e-22
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 2/98 (2%)

Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALER 221
            G     AGN  + I  + +A+++DP  +  +   G     L +Y+ A+ CY     +  
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71

Query: 222 -PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
                + +       +     E      E    +  + 
Sbjct: 72  DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 90.2 bits (225), Expect = 7e-22
 Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 2/107 (1%)

Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
              +  Y  GV   +   +  +I  +E A   +P  ++     G    + +  ++AV+CY
Sbjct: 4   QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCY 63

Query: 358 QMALSIKPNFSQSL--NNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
              +++  +                    +  AE+ E        + 
Sbjct: 64  NYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 87.9 bits (219), Expect = 4e-21
 Identities = 13/148 (8%), Positives = 38/148 (25%), Gaps = 43/148 (29%)

Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
               E Y   GV+  + G+   +I  +E+ + + P                         
Sbjct: 3   DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE------------------------ 38

Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNN 339
                             +      G A   + +++ A+  Y   +    + +  +    
Sbjct: 39  -----------------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81

Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNF 367
                +  +  +   E  +    ++ + 
Sbjct: 82  KADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 74.0 bits (183), Expect = 3e-16
 Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 43/139 (30%)

Query: 81  NVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAES 138
           N E +  +G+     + G    + D F +A++LDP+ +      G    +  R  EA + 
Sbjct: 5   NPEEYYLEGVLQY--DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62

Query: 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198
           Y+  ++                                       +  D +    +    
Sbjct: 63  YNYVIN---------------------------------------VIEDEYNKDVWAAKA 83

Query: 199 VVYSELMQYDTALGCYEKA 217
                +   +      E  
Sbjct: 84  DALRYIEGKEVEAEIAEAR 102

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 71.3 bits (176), Expect = 3e-15
 Identities = 14/76 (18%), Positives = 28/76 (36%)

Query: 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422
           +     +     GV+    G    + ++ EKAI  +P  ++ +   G    +      A+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 423 DAYEQCLKIDPDSRNA 438
           D Y   + +  D  N 
Sbjct: 61  DCYNYVINVIEDEYNK 76

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 65.6 bits (161), Expect = 3e-13
 Identities = 14/99 (14%), Positives = 32/99 (32%), Gaps = 6/99 (6%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKL- 111
             +      + +++ L+E  ++ D    +  + KG  L   N+ R   A D ++  + + 
Sbjct: 13  GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKAL--YNLERYEEAVDCYNYVINVI 70

Query: 112 -DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149
            D  N           +        AE        +  +
Sbjct: 71  EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 45.1 bits (108), Expect = 4e-06
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
                E Y   GVL  DAG+ + +ID +E+ +++DP+       +
Sbjct: 2   VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMK 46

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 41.7 bits (99), Expect = 7e-05
 Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 55  ANILRSRNKFVDALALYE--IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
              L +  ++ +A+  Y   I + +D  N +    K   L+      +  +      KL+
Sbjct: 47  GKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106

Query: 113 PQNA 116
             + 
Sbjct: 107 HHHH 110

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 94.3 bits (235), Expect = 3e-23
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
           Q   ++    L          + LG  Y+E  Q+D AL     A    P Y+ A+  +G 
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 234 IYKNRGDLESAIACYERCLAVSPNF--EIAKNNMAIALTDLG 273
             + +GD   A   +E  LA + +   +     + + L  L 
Sbjct: 62  TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 92.0 bits (229), Expect = 2e-22
 Identities = 20/89 (22%), Positives = 34/89 (38%)

Query: 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409
           +    E  +  L+   +       LG  Y    + DAA   +  A+  +PTY+ A+  LG
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60

Query: 410 VLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
              +  G  + A  A+E  L       + 
Sbjct: 61  KTLQGQGDRAGARQAWESGLAAAQSRGDQ 89

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 87.4 bits (217), Expect = 8e-21
 Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 3/111 (2%)

Query: 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 378
                E               LG  Y + +  D A+   + AL   P +S +   LG   
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 379 TVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQ 427
             QG    A +  E  +AA  +    +    L V  R       A++ +  
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR-EDALEHHHH 113

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 79.3 bits (196), Expect = 6e-18
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 2/104 (1%)

Query: 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
               +  L          + LG  Y E  +FD A+     A  F+P  + A   LG   +
Sbjct: 5   TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ 64

Query: 346 DRDNLDKAVECYQMALSIKPNF--SQSLNNLGVVYTVQGKMDAA 387
            + +   A + ++  L+   +    Q +  L V      + DA 
Sbjct: 65  GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDAL 108

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 78.9 bits (195), Expect = 7e-18
 Identities = 15/117 (12%), Positives = 29/117 (24%), Gaps = 9/117 (7%)

Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
              E     L+             ++   LG +          +     AL  DP Y+ A
Sbjct: 3   AITERLEAMLAQGTDN-------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA 55

Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYKNRGDLESAIACY 248
           +  LG           A   +E            +    + V  +     ++    +
Sbjct: 56  WKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 67.4 bits (165), Expect = 8e-14
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 2/101 (1%)

Query: 66  DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
                 E +L + + N+      G           A      A+  DP  + A    G  
Sbjct: 3   AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62

Query: 126 YKDEGRLVEAAESYHKALSADPSY--KPAAECLAIVLTDLG 164
            + +G    A +++   L+A  S   +   + L + L  L 
Sbjct: 63  LQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 67.4 bits (165), Expect = 8e-14
 Identities = 14/120 (11%), Positives = 33/120 (27%), Gaps = 9/120 (7%)

Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
           +++     E  LA   +  + +  +     +           +  + + + AL ++  Y+
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHE-------QFDAALPHLRAALDFDPTYS 53

Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQ 358
            A   LG           A   +E            +    L V  +     D     + 
Sbjct: 54  VAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHH 113

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 2/73 (2%)

Query: 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443
           M A  E +E  +A           LG  Y +      A+      L  DP    A +   
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKW-- 58

Query: 444 LAMNYINEGHDDK 456
           L      +G    
Sbjct: 59  LGKTLQGQGDRAG 71

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 15/88 (17%), Positives = 24/88 (27%), Gaps = 3/88 (3%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
                   +F  AL      L+ D     A    G  LQ Q     A  ++   +     
Sbjct: 26  GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85

Query: 115 NACAHTH--CGILYKDEGRLVEAAESYH 140
                      +  +   R  +A E +H
Sbjct: 86  RGDQQVVKELQVFLRRLARE-DALEHHH 112

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 95.2 bits (237), Expect = 3e-23
 Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 4/132 (3%)

Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
           + G          +    + +Y LG    +  K+D A   ++     + + A     LG 
Sbjct: 2   SDG-GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGA 60

Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA---ANP 399
             +     ++A++ Y     +  N  +   +    +   G +D A      A A   A P
Sbjct: 61  CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120

Query: 400 TYAEAYNNLGVL 411
            +       G +
Sbjct: 121 AHEALAARAGAM 132

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 93.7 bits (233), Expect = 1e-22
 Identities = 13/127 (10%), Positives = 29/127 (22%)

Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
             +    +    E    LG         D A + +Q    +    ++    LG      G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
             + A +        +        +    +   G +  A   +     +           
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126

Query: 443 LLAMNYI 449
             A   +
Sbjct: 127 ARAGAML 133

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 92.5 bits (230), Expect = 2e-22
 Identities = 24/141 (17%), Positives = 41/141 (29%), Gaps = 10/141 (7%)

Query: 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197
           +                     L  LG +   AG   D  + +     +D + A  +  L
Sbjct: 6   TLAMLRGLSEDT-------LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGL 58

Query: 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
           G     L  Y+ AL  Y   AL          +    +   GDL+ A + +    A++  
Sbjct: 59  GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118

Query: 258 ---FEIAKNNMAIALTDLGTK 275
               E         L  +  +
Sbjct: 119 QPAHEALAARAGAMLEAVTAR 139

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 80.2 bits (198), Expect = 6e-18
 Identities = 11/124 (8%), Positives = 31/124 (25%), Gaps = 7/124 (5%)

Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305
                   +S +       +       G         +     ++     + + A     
Sbjct: 5   GTLAMLRGLSEDTLEQLYALGFNQYQAG-------KWDDAQKIFQALCMLDHYDARYFLG 57

Query: 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365
           LG     +  ++ A+  Y      + +      +    +    +LD A   +  A ++  
Sbjct: 58  LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117

Query: 366 NFSQ 369
               
Sbjct: 118 AQPA 121

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 17/101 (16%), Positives = 32/101 (31%)

Query: 54  YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
                    K+ DA  +++ +   D  +    +G G C Q   +   A  S+S    +D 
Sbjct: 24  LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83

Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154
                  H    +   G L  A   ++ A +   +      
Sbjct: 84  NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 70.2 bits (172), Expect = 1e-14
 Identities = 18/142 (12%), Positives = 32/142 (22%), Gaps = 10/142 (7%)

Query: 69  ALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128
               ++       +E     G           A   F     LD  +A      G   + 
Sbjct: 5   GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS 64

Query: 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-- 186
            G   +A +SY      D +                      G+       +Y A  +  
Sbjct: 65  LGLYEQALQSYSYGALMDINE-------PRFPFHAAECHLQLGDLDGAESGFYSARALAA 117

Query: 187 -DPHYAPAYYNLGVVYSELMQY 207
             P +       G +   +   
Sbjct: 118 AQPAHEALAARAGAMLEAVTAR 139

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 15/96 (15%), Positives = 21/96 (21%), Gaps = 11/96 (11%)

Query: 52  LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
           L      +S   +  AL  Y      D            C         A   F  A  L
Sbjct: 56  LGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115

Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
                               L   A +  +A++A  
Sbjct: 116 AAAQP-----------AHEALAARAGAMLEAVTARK 140

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 91.2 bits (227), Expect = 5e-22
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 7/112 (6%)

Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
               A A  +LG     + + +KA   Y  A+ + P+     NN   VY  + K     +
Sbjct: 4   MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63

Query: 390 MIEKAIAANP-------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
             EKA+             A+A +  G  ++    +SLA+  + + L    D
Sbjct: 64  FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 85.4 bits (212), Expect = 6e-20
 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
           AI   DLG +     + +     Y +A+++DP     Y N   VY E  ++   +   EK
Sbjct: 8   AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67

Query: 217 A-------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
           A         +  + A+A    G  ++ + DL  A+  + R L+   + E+ K 
Sbjct: 68  AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK 121

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 78.5 bits (194), Expect = 1e-17
 Identities = 20/107 (18%), Positives = 40/107 (37%)

Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
               A A  +LG    +   ++ A   Y+KA    P     Y N   +Y         + 
Sbjct: 4   MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63

Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
             E+ + V          +A A++  G   + + D++  V ++ ++L
Sbjct: 64  FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 2/123 (1%)

Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
                A A  ++G     + D E A   Y++ + + P+     NN A    +     +  
Sbjct: 3   AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECV 62

Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEAC 337
               + V   ++        A AM   G A+ +     +A+ ++   L+   +P   +  
Sbjct: 63  QFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122

Query: 338 NNL 340
             L
Sbjct: 123 KEL 125

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 63.1 bits (154), Expect = 4e-12
 Identities = 16/86 (18%), Positives = 37/86 (43%)

Query: 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 421
           +   + + +  +LG     Q   + A    +KAI  +P+    YNN   +Y +    +  
Sbjct: 2   NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61

Query: 422 IDAYEQCLKIDPDSRNAGQNRLLAMN 447
           +   E+ +++  ++R   +    AM+
Sbjct: 62  VQFCEKAVEVGRETRADYKLIAKAMS 87

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 15/88 (17%), Positives = 38/88 (43%)

Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
           A   + +A++LDP N   + +   +Y +E +  E  +   KA+      +   + +A  +
Sbjct: 27  AHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86

Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDP 188
           +  G + +   +    +Q ++ +L    
Sbjct: 87  SRAGNAFQKQNDLSLAVQWFHRSLSEFR 114

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 56  NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
           N    +  F  A   Y+  +E D  N+  +  K      +           +AV++  + 
Sbjct: 16  NAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75

Query: 116 -------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
                  A A +  G  ++ +  L  A + +H++LS     +   + 
Sbjct: 76  RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 88.9 bits (221), Expect = 1e-21
 Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 2/91 (2%)

Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
           +P        L   +   DN  +A+  ++  +   P++  +  +LG +Y    + D A +
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 390 MIEKAIAANPTYAEAY--NNLGVLYRDAGSI 418
              + I            + L      A  +
Sbjct: 63  TYAQGIEVAREEGTQKDLSELQDAKLKAEGL 93

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 86.2 bits (214), Expect = 1e-20
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 2/89 (2%)

Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
           DP      Y L   + +      AL  +E+     P Y   Y ++G +Y+     + AI 
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 247 CYERCLAVSPNFEIAK--NNMAIALTDLG 273
            Y + + V+      K  + +  A     
Sbjct: 63  TYAQGIEVAREEGTQKDLSELQDAKLKAE 91

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 80.8 bits (200), Expect = 1e-18
 Identities = 16/74 (21%), Positives = 27/74 (36%)

Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424
           P    +   L   +        A  + E+ +  +P Y   Y +LG LY        AID 
Sbjct: 4   PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63

Query: 425 YEQCLKIDPDSRNA 438
           Y Q +++  +    
Sbjct: 64  YAQGIEVAREEGTQ 77

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 79.6 bits (197), Expect = 3e-18
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 2/89 (2%)

Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
                Y L   + +      A+  +E     +P       +LG +Y+  D  D A++ Y 
Sbjct: 6   DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65

Query: 359 MALSIKPNFS--QSLNNLGVVYTVQGKMD 385
             + +       + L+ L         ++
Sbjct: 66  QGIEVAREEGTQKDLSELQDAKLKAEGLE 94

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 73.8 bits (182), Expect = 3e-16
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
           L        N    +  + E ++ DP Y   YY+LG +Y  L + D A+  Y +      
Sbjct: 13  LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72

Query: 223 MYAEAY--CNMGVIYKNRGDLESAIACY 248
                     +         LE     +
Sbjct: 73  EEGTQKDLSELQDAKLKAEGLEHHHHHH 100

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 71.9 bits (177), Expect = 1e-15
 Identities = 10/107 (9%), Positives = 29/107 (27%), Gaps = 9/107 (8%)

Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
           +E P        +   +    +   A+A +E  +   P++     ++      L      
Sbjct: 1   MEDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERL------ 54

Query: 279 EGDINQGVAYYKKALYYNWHYADA--MYNLGVAYGEMLKFDMAIVFY 323
               +  +  Y + +           +  L  A  +    +     +
Sbjct: 55  -DRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 14/73 (19%), Positives = 25/73 (34%)

Query: 77  KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136
           +D  +              +    A   F E V+ DP     + H G LY+   R  +A 
Sbjct: 2   EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61

Query: 137 ESYHKALSADPSY 149
           ++Y + +      
Sbjct: 62  DTYAQGIEVAREE 74

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
           +P        L   +    + S A+  +E+ ++ DPD      +  L   Y      D 
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYH--LGKLYERLDRTDD 59

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 49  KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
           +D  +    A      +    ALAL+E ++E D   V  +   G   +  +    A D++
Sbjct: 5   EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64

Query: 106 SEAVKLDPQNACAHTH 121
           ++ +++  +       
Sbjct: 65  AQGIEVAREEGTQKDL 80

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 93.0 bits (232), Expect = 4e-21
 Identities = 52/241 (21%), Positives = 84/241 (34%), Gaps = 31/241 (12%)

Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DLESAI 245
                  LG    +   +  A   +EKA   +        N+GV+Y   +G   +L+ A 
Sbjct: 5   DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAA 62

Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305
           + Y +  A   N+    + +       G  V    + N+ + YY KA      YA+   +
Sbjct: 63  SFYAK--ACDLNYSNGCHLLGNLYYS-GQGVSQ--NTNKALQYYSKACDLK--YAEGCAS 115

Query: 306 LGVAY--GEMLK--FDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECY 357
           LG  Y  G+++   F  A+ ++  A   N    + C  LG +Y        +L KA+  Y
Sbjct: 116 LGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASY 173

Query: 358 QMALSIKPNFSQSLNNLGVVYT----VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
             A       S    N G +Y            A     KA            NLG +  
Sbjct: 174 DKA--CDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQY 229

Query: 414 D 414
           +
Sbjct: 230 N 230

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 87.3 bits (217), Expect = 3e-19
 Identities = 55/261 (21%), Positives = 89/261 (34%), Gaps = 42/261 (16%)

Query: 178 QKYYEALKI-----DPHYAPAYYNLGVVYSE---LMQ-YDTALGCYEKAALERPMYAEAY 228
           + + +A K      D       +NLGV+Y +   + +    A   Y KA      Y+   
Sbjct: 20  KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77

Query: 229 CNMGVIYKN-RG---DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
             +G +Y + +G   +   A+  Y +  A    +     ++     D G  V    D  +
Sbjct: 78  HLLGNLYYSGQGVSQNTNKALQYYSK--ACDLKYAEGCASLGGIYHD-GKVV--TRDFKK 132

Query: 285 GVAYYKKALYYNWHYADAMYNLGVAY--GEMLKFDM--AIVFYELAFHFNPHCAEACNNL 340
            V Y+ KA   N    D    LG  Y  G     D+  A+  Y+ A       +  C N 
Sbjct: 133 AVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNA 188

Query: 341 GVIYKDRD----NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK-----MDAAAEMI 391
           G +Y   +    N  +A+  Y  A   +        NLG +    G+        A E  
Sbjct: 189 GNMYHHGEGATKNFKEALARYSKA--CELENGGGCFNLGAMQ-YNGEGVTRNEKQAIENF 245

Query: 392 EKAIAANPTYAEAYNNLGVLY 412
           +K          A + L  L 
Sbjct: 246 KKGCKLG--AKGACDILKQLK 264

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 60/293 (20%), Positives = 101/293 (34%), Gaps = 58/293 (19%)

Query: 80  GNVEAHIGKGICL-QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV----- 133
            + +  +G G    + ++  + A   F +A  L         + G+LY  +G+ V     
Sbjct: 4   QDPKELVGLGAKSYKEKDFTQ-AKKYFEKACDLK--ENSGCFNLGVLY-YQGQGVEKNLK 59

Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-----DP 188
           +AA  Y KA   D +Y      L   L   G      G +Q+      +AL+      D 
Sbjct: 60  KAASFYAKA--CDLNYSNGCHLLG-NLYYSGQ-----GVSQN----TNKALQYYSKACDL 107

Query: 189 HYAPAYYNLGVVYSE---LMQ-YDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---D 240
            YA    +LG +Y +   + + +  A+  + KA        +    +G +Y   RG   D
Sbjct: 108 KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD 165

Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
           L+ A+A Y++  A          N        G       +  + +A Y KA        
Sbjct: 166 LKKALASYDK--ACDLKDSPGCFNAGNMYHH-GEGA--TKNFKEALARYSKACELE--NG 218

Query: 301 DAMYNLGVAY----GEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYK 345
              +NLG       G       AI  ++        C      AC+ L  +  
Sbjct: 219 GGCFNLGAMQYNGEGVTRNEKQAIENFKKG------CKLGAKGACDILKQLKI 265

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 89.2 bits (221), Expect = 8e-21
 Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 3/135 (2%)

Query: 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368
            +      +  +   +     NP  +E    LG  Y  +++   ++  Y+ AL ++   +
Sbjct: 19  QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78

Query: 369 QSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425
           +    L  V   Q           MI+KA+A +     A   L        + + AI+ +
Sbjct: 79  ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138

Query: 426 EQCLKIDPDSRNAGQ 440
           ++ + ++    N  Q
Sbjct: 139 QKVMDLNSPRINRTQ 153

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 79.1 bits (195), Expect = 3e-17
 Identities = 21/153 (13%), Positives = 46/153 (30%), Gaps = 4/153 (2%)

Query: 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
           P ++  +        D   +   + +    +   +  +  N   ++    LG  Y     
Sbjct: 1   PKWQAVRAEYQ-RQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND 59

Query: 316 FDMAIVFYELAFHFNPHCAEACNNLGVIY---KDRDNLDKAVECYQMALSIKPNFSQSLN 372
           +  +++ Y  A       AE    L  +      +    +       AL++  N   +L 
Sbjct: 60  YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119

Query: 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
            L     +Q     A E+ +K +  N       
Sbjct: 120 LLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 74.5 bits (183), Expect = 1e-15
 Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 11/150 (7%)

Query: 147 PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206
           P ++ A         D         N +  +Q   + ++ +P  +  +  LG  Y     
Sbjct: 1   PKWQ-AVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND 59

Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIY---KNRGDLESAIACYERCLAVSPNFEIAKN 263
           Y  +L  Y +A   R   AE Y  +  +     ++       A  ++ LA+  N   A  
Sbjct: 60  YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119

Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
            +A              +  Q +  ++K +
Sbjct: 120 LLASDAFMQ-------ANYAQAIELWQKVM 142

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 74.5 bits (183), Expect = 1e-15
 Identities = 22/140 (15%), Positives = 39/140 (27%), Gaps = 11/140 (7%)

Query: 92  LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
              QN       +  + ++ +PQN+      G  Y  +     +  +Y +AL        
Sbjct: 21  ASQQNPEAQL-QALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79

Query: 152 AAECLAIVLTDLGTSLKLAGN---TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208
                      L T L    +   T        +AL +D +   A   L         Y 
Sbjct: 80  L-------YAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYA 132

Query: 209 TALGCYEKAALERPMYAEAY 228
            A+  ++K            
Sbjct: 133 QAIELWQKVMDLNSPRINRT 152

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 71.0 bits (174), Expect = 2e-14
 Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 8/126 (6%)

Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
           +  + N +  ++  Q  +   P  S+    LG  Y  Q     +     +A+      AE
Sbjct: 20  FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79

Query: 404 AYNNLG-VLYRDAGSISL--AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 460
            Y  L  VLY  A            ++ L +D +   A    LLA +   + +     +A
Sbjct: 80  LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA--LMLLASDAFMQANYA---QA 134

Query: 461 HRDWGK 466
              W K
Sbjct: 135 IELWQK 140

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 66.8 bits (163), Expect = 5e-13
 Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 10/135 (7%)

Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
           +  +       ++    + A+P         +     LG       +  + +  Y +AL+
Sbjct: 20  FASQQNPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWQNDYSNSLLAYRQALQ 72

Query: 186 IDPHYAPAYYNLGVVYSELMQY---DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
           +    A  Y  L  V                 +KA         A   +      + +  
Sbjct: 73  LRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYA 132

Query: 243 SAIACYERCLAVSPN 257
            AI  +++ + ++  
Sbjct: 133 QAIELWQKVMDLNSP 147

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 58.0 bits (140), Expect = 6e-10
 Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 3/103 (2%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL---AFDSFSEAVKL 111
                 +N + ++L  Y   L+    N E +      L  Q    +         +A+ L
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110

Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154
           D     A          +    +A E + K +  +       +
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 18/87 (20%), Positives = 33/87 (37%)

Query: 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428
           Q   +    +  Q   +A  + ++  I ANP  +E +  LG  Y      S ++ AY Q 
Sbjct: 11  QRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQA 70

Query: 429 LKIDPDSRNAGQNRLLAMNYINEGHDD 455
           L++  ++          + Y    H  
Sbjct: 71  LQLRGENAELYAALATVLYYQASQHMT 97

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 88.0 bits (218), Expect = 1e-20
 Identities = 16/148 (10%), Positives = 41/148 (27%)

Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
           G +  G          +    + +Y+L     +   ++ A   ++     + + +     
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
           LG   +     D A+  Y     +     +   +        G++  A   +  A     
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
              E       +     +I L  +   +
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEMKHE 148

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 87.7 bits (217), Expect = 2e-20
 Identities = 20/145 (13%), Positives = 37/145 (25%), Gaps = 7/145 (4%)

Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
           G L     +                     L  L  +   +G  +D    +     +D +
Sbjct: 1   GPLGSGGGTIAMLNEISSDT-------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY 53

Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
            +  +  LG     + QYD A+  Y   A+          +        G+L  A +   
Sbjct: 54  DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113

Query: 250 RCLAVSPNFEIAKNNMAIALTDLGT 274
               +  N            + L  
Sbjct: 114 LAQELIANXPEFXELSTRVSSMLEA 138

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 84.6 bits (209), Expect = 2e-19
 Identities = 13/142 (9%), Positives = 31/142 (21%)

Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
                     +    +    E   +L          + A   +Q    +    S+    L
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
           G      G+ D A          +        +        G ++ A        ++  +
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

Query: 435 SRNAGQNRLLAMNYINEGHDDK 456
                +      + +      K
Sbjct: 122 XPEFXELSTRVSSMLEAIKLKK 143

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 79.6 bits (196), Expect = 1e-17
 Identities = 20/152 (13%), Positives = 41/152 (26%), Gaps = 7/152 (4%)

Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
           G L S          +S +      ++A      G               ++     + +
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGX-------YEDAHXVFQALCVLDHY 53

Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
            +     LG     M ++D+AI  Y      +        +          L +A     
Sbjct: 54  DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113

Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390
           +A  +  N  +       V ++   +    EM
Sbjct: 114 LAQELIANXPEFXELSTRVSSMLEAIKLKKEM 145

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 68.0 bits (166), Expect = 9e-14
 Identities = 20/96 (20%), Positives = 30/96 (31%)

Query: 53  SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
           S A        + DA  +++ +   D  +    +G G C Q      LA  S+S    +D
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85

Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
                   H        G L EA      A     +
Sbjct: 86  IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 63.8 bits (155), Expect = 3e-12
 Identities = 16/127 (12%), Positives = 28/127 (22%), Gaps = 7/127 (5%)

Query: 63  KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122
                     ++ E  S  +E                 A   F     LD  ++      
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
           G   +  G+   A  SY      D                    L   G   +     + 
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRF-------PFHAAECLLQXGELAEAESGLFL 114

Query: 183 ALKIDPH 189
           A ++  +
Sbjct: 115 AQELIAN 121

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 7/57 (12%), Positives = 15/57 (26%)

Query: 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
           G + +    I      +    E   +L      +G    A   ++    +D      
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 86.5 bits (215), Expect = 2e-20
 Identities = 30/122 (24%), Positives = 52/122 (42%)

Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
           +   AE     G      +N + AV  Y  A+ + P  +    N    Y+  G    A +
Sbjct: 8   DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67

Query: 390 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 449
             E+AI  +P Y++AY  +G+          A+  Y++ L++DPD+     N  +A   +
Sbjct: 68  DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127

Query: 450 NE 451
            E
Sbjct: 128 RE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 86.1 bits (214), Expect = 4e-20
 Identities = 30/104 (28%), Positives = 52/104 (50%)

Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
             N +  +  Y +A++++P  A  + N    YS+L  Y  A+   E+A    P Y++AY 
Sbjct: 25  VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84

Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
            MG+   +      A+A Y++ L + P+ E  K+N+ IA   L 
Sbjct: 85  RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 79.6 bits (197), Expect = 7e-18
 Identities = 27/115 (23%), Positives = 47/115 (40%)

Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
            A+ +   G    ++  F+ A+ FY  A   NP  A    N    Y    N   AV+  +
Sbjct: 11  EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70

Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
            A+ I P +S++   +G+  +   K   A    +KA+  +P      +NL +   
Sbjct: 71  RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 77.6 bits (192), Expect = 2e-17
 Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 7/132 (5%)

Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241
              + D   A      G    ++  ++ A+  Y KA    P  A  +CN    Y   G+ 
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62

Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301
             A+   ER + + P +  A   M +AL+ L           + VAYYKKAL  +     
Sbjct: 63  AGAVQDCERAICIDPAYSKAYGRMGLALSSLN-------KHVEAVAYYKKALELDPDNET 115

Query: 302 AMYNLGVAYGEM 313
              NL +A  ++
Sbjct: 116 YKSNLKIAELKL 127

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 71.9 bits (177), Expect = 3e-15
 Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
           E    AE     G       + E+A+  Y + + ++P   +   N A A + L       
Sbjct: 7   EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL------- 59

Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
           G+    V   ++A+  +  Y+ A   +G+A   + K   A+ +Y+ A   +P      +N
Sbjct: 60  GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSN 119

Query: 340 LGVIYK 345
           L +   
Sbjct: 120 LKIAEL 125

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 69.5 bits (171), Expect = 2e-14
 Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 7/134 (5%)

Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
              + D   A      G           A   Y KA+  +P+        A+   +   +
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-------AVYFCNRAAA 55

Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
               GN    +Q    A+ IDP Y+ AY  +G+  S L ++  A+  Y+KA    P    
Sbjct: 56  YSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNET 115

Query: 227 AYCNMGVIYKNRGD 240
              N+ +      +
Sbjct: 116 YKSNLKIAELKLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 18/72 (25%), Positives = 27/72 (37%)

Query: 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422
                ++ L   G         +AA     KAI  NP  A  + N    Y   G+ + A+
Sbjct: 7   EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66

Query: 423 DAYEQCLKIDPD 434
              E+ + IDP 
Sbjct: 67  QDCERAICIDPA 78

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 24/111 (21%), Positives = 36/111 (32%)

Query: 56  NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
           N       F  A+  Y   +E +  N      +            A      A+ +DP  
Sbjct: 20  NEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79

Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
           + A+   G+      + VEA   Y KAL  DP  +     L I    L  +
Sbjct: 80  SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 86.4 bits (214), Expect = 5e-20
 Identities = 11/122 (9%), Positives = 38/122 (31%)

Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
            +          +   +    + ++  +++A   ++            +  L  +Y ++ 
Sbjct: 25  LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84

Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
           +   AA++   A A          + G       +   A + +E  ++   D +   + +
Sbjct: 85  QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQ 144

Query: 443 LL 444
             
Sbjct: 145 SY 146

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 83.7 bits (207), Expect = 4e-19
 Identities = 19/113 (16%), Positives = 40/113 (35%)

Query: 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346
           A  K          D +Y+    +    + + A VF+     ++ +  +    L  IY+ 
Sbjct: 23  ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI 82

Query: 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
           ++   +A + Y +A ++  N    + + G           A E  E  I  + 
Sbjct: 83  KEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 81.8 bits (202), Expect = 2e-18
 Identities = 15/136 (11%), Positives = 36/136 (26%), Gaps = 3/136 (2%)

Query: 134 EAAESYHKALSADPSYKPAAEC---LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190
             + +   A+++  + K        +   +          G  ++    +      D + 
Sbjct: 10  SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69

Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
                 L  +Y    Q+  A   Y  A            + G           A  C+E 
Sbjct: 70  VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129

Query: 251 CLAVSPNFEIAKNNMA 266
            +  S + ++     +
Sbjct: 130 VIQHSNDEKLKIKAQS 145

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 77.9 bits (192), Expect = 4e-17
 Identities = 10/114 (8%), Positives = 28/114 (24%), Gaps = 7/114 (6%)

Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
             +   I        Y+    +    + + A   +    +      +    +  IY+ + 
Sbjct: 25  LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84

Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
             + A   Y    A+  N      +       L           +    ++  +
Sbjct: 85  QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL-------KAPLKAKECFELVI 131

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 72.5 bits (178), Expect = 3e-15
 Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 1/108 (0%)

Query: 259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 318
            I  + M   +         +G I +   +++    Y+++  D +  L   Y    +F  
Sbjct: 30  AIPDDMMD-DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQ 88

Query: 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
           A   Y +AF    +      + G          KA EC+++ +    +
Sbjct: 89  AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 69.4 bits (170), Expect = 3e-14
 Identities = 17/95 (17%), Positives = 35/95 (36%)

Query: 53  SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
           SYA    ++ +  +A   +  +   D  NV+  +G     Q++   + A D ++ A  L 
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
             +     H G         ++A E +   +    
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 65.2 bits (159), Expect = 1e-12
 Identities = 8/81 (9%), Positives = 24/81 (29%)

Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
              +   +I  +    + +    +  +G+++ A          +    +    L  +Y+ 
Sbjct: 23  ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI 82

Query: 415 AGSISLAIDAYEQCLKIDPDS 435
                 A D Y     +  + 
Sbjct: 83  KEQFQQAADLYAVAFALGKND 103

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 62.5 bits (152), Expect = 1e-11
 Identities = 19/170 (11%), Positives = 41/170 (24%), Gaps = 45/170 (26%)

Query: 50  DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSE 107
           +     +I  +    +++ A  + +       ++            N GR+  A   F  
Sbjct: 4   NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFY--NKGRIEEAEVFFRF 61

Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
               D  N         +Y+ + +  +AA+ Y                            
Sbjct: 62  LCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV-------------------------- 95

Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
                          A  +  +     ++ G     L     A  C+E  
Sbjct: 96  ---------------AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 10/65 (15%), Positives = 19/65 (29%)

Query: 52  LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
           +  A I + + +F  A  LY +       +       G C         A + F   ++ 
Sbjct: 74  MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133

Query: 112 DPQNA 116
                
Sbjct: 134 SNDEK 138

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 90.4 bits (225), Expect = 3e-19
 Identities = 76/411 (18%), Positives = 131/411 (31%), Gaps = 84/411 (20%)

Query: 66  DALALYEIVLEKDSGNVEAHIGKGICLQM-----QNMGRLAFDSFSEAVKLDPQNACAHT 120
             + L ++  + +SG  +A +  G          +++ + A D F  A +       A  
Sbjct: 23  GNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQ-AMDWFRRAAEQG--YTPAEY 79

Query: 121 HCGILYKDEGRLV-----EAAESYHKALSADPSYKPAAECLAI-------VLTDLGTSLK 168
             G+ Y   G  V     +A   Y KA  A      A + L +       V  D   S+K
Sbjct: 80  VLGLRY-MNGEGVPQDYAQAVIWYKKA--ALKGLPQAQQNLGVMYHEGNGVKVDKAESVK 136

Query: 169 L------AGNTQ------------DGIQK-YYEALKI-----DPHYAPAYYNLGVVYSE- 203
                   G               DG+ + Y  A +      +     +   LG +YS  
Sbjct: 137 WFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRG 196

Query: 204 --LMQ-YDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DLESAIACYERCLAVSP 256
             + +    +   Y K+A           ++  +Y    G   D   +   + +  +   
Sbjct: 197 LGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ--SAEQ 252

Query: 257 NFEIAKNNMAIA-LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
              IA+  +       L        +  + + +Y+K+       +D  Y L   Y +  +
Sbjct: 253 GNSIAQFRLGYILEQGLAGAK----EPLKALEWYRKS--AEQGNSDGQYYLAHLYDKGAE 306

Query: 316 -----FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNF 367
                 + AI +Y  +       A A  NLG IY          KAVE ++ A       
Sbjct: 307 GVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEHKKAVEWFRKA--AAKGE 362

Query: 368 SQSLNNLGVVYT----VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
             +  NLG        V+     AA  + KA       + A   LG +Y  
Sbjct: 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYY 411

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 87.3 bits (217), Expect = 3e-18
 Identities = 67/344 (19%), Positives = 109/344 (31%), Gaps = 55/344 (15%)

Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC-LAIV 159
             +   +  +     A A    G  Y  +G      +   +A+     ++ AAE      
Sbjct: 26  NLEQLKQKAESG--EAKAQLELGYRY-FQGNETT--KDLTQAMD---WFRRAAEQGYTPA 77

Query: 160 LTDLGTSLKL-AGNTQDGIQ--KYYE--ALKIDPHYAPAYYNLGVVYSE----LMQYDTA 210
              LG       G  QD  Q   +Y+  ALK       A  NLGV+Y E     +    +
Sbjct: 78  EYVLGLRYMNGEGVPQDYAQAVIWYKKAALK---GLPQAQQNLGVMYHEGNGVKVDKAES 134

Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKN-RG---DLESAIACYERCLAVSPNFEIAKNNMA 266
           +  +  AA +         +MG  Y    G   D   A   Y +  A       + N + 
Sbjct: 135 VKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSK--AAEQGNVWSCNQLG 190

Query: 267 IALTD-LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLKFD--MAIV 321
              +  LG +     +      +Y+K+            +L   Y  G  +  D   + V
Sbjct: 191 YMYSRGLGVER----NDAISAQWYRKS--ATSGDELGQLHLADMYYFGIGVTQDYTQSRV 244

Query: 322 FYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377
            +  +       + A   LG I +          KA+E Y+ +   +   S     L  +
Sbjct: 245 LFSQSAEQG--NSIAQFRLGYILEQGLAGAKEPLKALEWYRKS--AEQGNSDGQYYLAHL 300

Query: 378 YT-----VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
           Y      V    + A     K+       A A  NLG +Y   G
Sbjct: 301 YDKGAEGVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLG 342

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 70.8 bits (174), Expect = 6e-13
 Identities = 35/191 (18%), Positives = 67/191 (35%), Gaps = 32/191 (16%)

Query: 190 YAPAYYNLGVVYSELMQ-----YDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DL 241
            +   Y L  +Y +  +      + A+  Y K+A +    A A  N+G IY   G   + 
Sbjct: 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEH 347

Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTD-LGTKVKLEGDINQGVAYYKKALYYNWHYA 300
           + A+  + +  A +   + A+ N+  AL    G K     D  Q   + +KA       +
Sbjct: 348 KKAVEWFRK--AAAKGEKAAQFNLGNALLQGKGVKK----DEQQAAIWMRKAAEQG--LS 399

Query: 301 DAMYNLGVAY--GEMLKFD--MAIVFYELAFHFNPHCAEACNNLGVIYKDR-------DN 349
            A   LG  Y  G  ++ D   A  +++ A   +            I + +         
Sbjct: 400 AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM--NLFGTENRNITEKKLTAKQLQQA 457

Query: 350 LDKAVECYQMA 360
              + +  +  
Sbjct: 458 ELLSQQYIEKY 468

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 20/165 (12%)

Query: 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLKFDM- 318
           K+ +A+ LT L   V L    N  +   K+        A A   LG  Y  G     D+ 
Sbjct: 3   KSLLAVMLTGLFALVSLPALGNVNLEQLKQKAESG--EAKAQLELGYRYFQGNETTKDLT 60

Query: 319 -AIVFYELAFHFNPHCAEACNNLGVIYKDRD----NLDKAVECYQMALSIKPNFSQSLNN 373
            A+ ++  A         A   LG+ Y + +    +  +AV  Y+ A        Q+  N
Sbjct: 61  QAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKA--ALKGLPQAQQN 116

Query: 374 LGVVYT----VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
           LGV+Y     V+     + +    A            ++G  Y +
Sbjct: 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFE 159

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 89.3 bits (221), Expect = 3e-19
 Identities = 50/388 (12%), Positives = 103/388 (26%), Gaps = 73/388 (18%)

Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
             +  ++G   EA      AL   P     +  +A   + LG  L   G     +    +
Sbjct: 21  AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVA--TSVLGEVLHCKGELTRSLALMQQ 78

Query: 183 ALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA--------ALERPMYAEAY 228
             ++        +   +      +        TA    EKA          + PM+    
Sbjct: 79  TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 138

Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
                +      L+ A A     + V  +++         L  L       GD++   + 
Sbjct: 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ--QQLQCLAMLIQCSLARGDLDNARSQ 196

Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348
             +                             +     +H     + A     + ++   
Sbjct: 197 LNRLEN--------------------------LLGNGKYHS-DWISNANKVRVIYWQMTG 229

Query: 349 NLDKAVECYQMAL----SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------N 398
           +   A    +       +          N+     + G+ + A  ++E+           
Sbjct: 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM 289

Query: 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG------ 452
                    L  LY  AG  S A       LK+      A +   +  +++ EG      
Sbjct: 290 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL------ANRTGFI-SHFVIEGEAMAQQ 342

Query: 453 -----HDDKLFEAHRDWGKRFMRLYSQY 475
                  + L E  +   +R +R  +Q+
Sbjct: 343 LRQLIQLNTLPELEQHRAQRILREINQH 370

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 82.3 bits (203), Expect = 5e-17
 Identities = 42/290 (14%), Positives = 86/290 (29%), Gaps = 33/290 (11%)

Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
           K   E  M+AE       +  N G+ + A    +  L   P       +  +A + LG  
Sbjct: 5   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEV 62

Query: 276 VKLEGDINQGVAYYKKALYY-----NWHY-ADAMYNLGVAYGEMLKFDMAIVFYELAF-- 327
           +  +G++ + +A  ++          WHY   ++               A    E AF  
Sbjct: 63  LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122

Query: 328 ------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS-----LNNLGV 376
                    P           +      LD+A    +  + +  ++        L  L  
Sbjct: 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182

Query: 377 VYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429
               +G +D A   + +           +   + A     + ++  G  + A +      
Sbjct: 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242

Query: 430 KIDPDSR--NAGQNRLLAMNYINEGHDDK---LFEAHRDWGKRFMRLYSQ 474
           K +  +     GQ R +A   I  G  +    + E   +  +    +   
Sbjct: 243 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 292

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 71.2 bits (174), Expect = 2e-13
 Identities = 41/337 (12%), Positives = 85/337 (25%), Gaps = 63/337 (18%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGN-----VEAHIGKGICLQMQNMGRL--AFDSFSE 107
           A +  +     +A  L ++ LE+         + A    G  L  +  G L  +     +
Sbjct: 21  AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK--GELTRSLALMQQ 78

Query: 108 AVKL------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161
             ++            +      +   +G L  A E+  KA               ++  
Sbjct: 79  TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA-------------FQLINE 125

Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA---- 217
                L                    P +         +     + D A           
Sbjct: 126 QHLEQL--------------------PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165

Query: 218 -ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
            + +     +    +      RGDL++A +   R   +  N +   + ++ A        
Sbjct: 166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225

Query: 277 KLEGDINQGVAYYKKALY----YNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------ 326
           ++ GD      + +         N        N+  A   + +F+ A +  E        
Sbjct: 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 285

Query: 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363
                        L  +Y        A      AL +
Sbjct: 286 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 23/225 (10%), Positives = 55/225 (24%), Gaps = 23/225 (10%)

Query: 52  LSYANILRSRNKFVDALALYEIVLE--------KDSGNVEAHIGKGICLQMQNMGRLAFD 103
           +  + IL ++     A    E   +        +   +      +   L        A  
Sbjct: 97  IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 156

Query: 104 SFSEAVKL-----DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
           S    +++       Q               G L  A    ++  +   + K  ++ ++ 
Sbjct: 157 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216

Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQYDTALGCY 214
                    ++ G+            K +          + N+      L +++ A    
Sbjct: 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVL 276

Query: 215 EKA-----ALERPMY-AEAYCNMGVIYKNRGDLESAIACYERCLA 253
           E+      +L            +  +Y   G    A       L 
Sbjct: 277 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 80.1 bits (198), Expect = 3e-18
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 4/103 (3%)

Query: 171 GNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
           G     +  Y +A+         A  Y  LG  +  L +Y  A         + P +   
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIAL 269
                ++  N G  E  +    + +A + + E I     AI  
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF 106

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 77.5 bits (191), Expect = 2e-17
 Identities = 11/89 (12%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 350 LDKAVECYQMALSIK---PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406
             +AV  Y+ A++      + ++    LG  +   G+   A  ++   +   P +     
Sbjct: 6   EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRV 65

Query: 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
              ++  + G     ++   + +    D 
Sbjct: 66  FYAMVLYNLGRYEQGVELLLKIIAETSDD 94

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 73.2 bits (180), Expect = 6e-16
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 15/109 (13%)

Query: 206 QYDTALGCYEKA---ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
               A+  YEKA    L+    AE Y  +G  ++  G+   A A     +   PN +  +
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 263 NNMAIALTDLG---------TKVKLEGDINQGVAYYKKALYYNWHYADA 302
              A+ L +LG          K+  E   ++ +  YK+A+ +   YAD 
Sbjct: 65  VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF---YADK 110

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 14/118 (11%)

Query: 315 KFDMAIVFYELAFHFN---PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371
               A+ +YE A          AE    LG  ++      KA       +   PN     
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429
               +V    G+ +   E++ K IA         +     Y+       AI  Y   L
Sbjct: 65  VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS-----YK------QAILFYADKL 111

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 3/90 (3%)

Query: 280 GDINQGVAYYKKAL---YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
           G   Q V YY+KA+         A+    LG  +  + ++  A           P+    
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
                ++  +    ++ VE     ++   +
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSD 93

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 15/123 (12%)

Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
           G   +A   Y KA+++    K  AEC       LG++ +  G  +         +K  P+
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECY----LGLGSTFRTLGEYRKAEAVLANGVKQFPN 59

Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
           +        +V   L +Y+  +    K   E                     + AI  Y 
Sbjct: 60  HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETI-----------QSYKQAILFYA 108

Query: 250 RCL 252
             L
Sbjct: 109 DKL 111

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 62.0 bits (151), Expect = 7e-12
 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 380 VQGKMDAAAEMIEKAIAAN---PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436
           V G    A    EKAIA+       AE Y  LG  +R  G    A       +K  P+ +
Sbjct: 2   VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61

Query: 437 NAGQNRLLAMNYINEGHDDK 456
                   AM   N G  ++
Sbjct: 62  ALRVF--YAMVLYNLGRYEQ 79

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 54.0 bits (130), Expect = 4e-09
 Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 23/127 (18%)

Query: 96  NMGRL--AFDSFSEAVKL---DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150
            +G    A   + +A+         A  +   G  ++  G   +A       +   P+++
Sbjct: 2   VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61

Query: 151 PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210
                 A+VL +L       G  + G++   + +                   +  Y  A
Sbjct: 62  ALRVFYAMVLYNL-------GRYEQGVELLLKIIAETSDDE-----------TIQSYKQA 103

Query: 211 LGCYEKA 217
           +  Y   
Sbjct: 104 ILFYADK 110

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 7/90 (7%)

Query: 66  DALALYEIVLE---KDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDPQNACAHT 120
            A+  YE  +    +     E ++G G     + +G    A    +  VK  P +     
Sbjct: 8   QAVPYYEKAIASGLQGKDLAECYLGLGSTF--RTLGEYRKAEAVLANGVKQFPNHQALRV 65

Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYK 150
              ++  + GR  +  E   K ++     +
Sbjct: 66  FYAMVLYNLGRYEQGVELLLKIIAETSDDE 95

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 77.7 bits (192), Expect = 3e-17
 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 7/114 (6%)

Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
           A+   +LG       +    ++ Y +A ++DP       N   VY E   Y+      EK
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 217 A-------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
           A         +    A+AY  +G  Y      + AI  Y + LA     ++ K 
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 7/109 (6%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
           A     LG     + + D A++ Y  A  + P     + N   VY  +G  +   E+ EK
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 394 AI-------AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
           AI             A+AY  +G  Y        AI  Y + L      
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 63.1 bits (154), Expect = 4e-12
 Identities = 24/103 (23%), Positives = 36/103 (34%)

Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
           A     LG    +   +DTAL  Y+KA    P       N   +Y  +GD        E+
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
            + V          +A A   +G     E      + +Y K+L
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 7/108 (6%)

Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
           A+   +LG     + D +  + +Y KA   +      + N    Y E   ++      E 
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 326 AFHFNPHC-------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
           A              A+A   +G  Y   +    A+  Y  +L+    
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 13/74 (17%), Positives = 28/74 (37%)

Query: 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428
                LG     +   D A +  +KA   +PT      N   +Y + G  +   +  E+ 
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 429 LKIDPDSRNAGQNR 442
           +++  ++R   +  
Sbjct: 65  IEVGRENREDYRQI 78

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 34/122 (27%)

Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
           A   + +A +LDP N    T+   +Y ++G   +  E   KA+                 
Sbjct: 23  ALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR------------- 69

Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
                                E  +     A AY  +G  Y +  +Y  A+  Y K+  E
Sbjct: 70  ---------------------ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108

Query: 221 RP 222
             
Sbjct: 109 HR 110

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 10/111 (9%)

Query: 48  GKDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
           GK AL      N    +  F  AL  Y+   E D  N+     +      +       + 
Sbjct: 1   GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60

Query: 105 FSEAVKLDPQN-------ACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
             +A+++  +N       A A+   G  Y  E +  +A   Y+K+L+   +
Sbjct: 61  CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 82.5 bits (204), Expect = 9e-17
 Identities = 53/339 (15%), Positives = 100/339 (29%), Gaps = 73/339 (21%)

Query: 114 QNACAHTHCGILYKDEGR---LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
               A     +LY+ +G     ++  E   KA  A  +       LA V           
Sbjct: 139 GYPEAGLAQVLLYRTQGTYDQHLDDVERICKA--ALNTTDICYVELATVYQK-------- 188

Query: 171 GNTQDGIQKYYEALKI-----DPHYAPAYYNLGVVY------SELMQYDTALGCYEKAAL 219
              +   ++  E LK            A     V               TA    EK A 
Sbjct: 189 ---KQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244

Query: 220 ERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
             P Y  ++ ++  +  +     D+E  +   +     + +   A+  +     + G  V
Sbjct: 245 --PGYPASWVSLAQLLYDFPELGDVEQMMKYLDN--GRAADQPRAELLLGKLYYE-GKWV 299

Query: 277 KLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAY--GEMLKFDM--AIVFYELAFH 328
               D     A+++KA             A Y LG  Y  G + K     A+     A  
Sbjct: 300 PA--DAKAAEAHFEKA-------VGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA-- 348

Query: 329 FNPHCAE-----ACNNLGVIYKDRD----NLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379
                A      A   +  ++        +   A    Q+A     +  ++ +    +  
Sbjct: 349 -----ARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA--KAQDTPEANDLATQLEA 401

Query: 380 --VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
                +      ++++ +AA  T A++   L  L  + G
Sbjct: 402 PLTPAQRAEGQRLVQQELAARGTLAQSTLQLHALQEEDG 440

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 70.2 bits (172), Expect = 7e-13
 Identities = 35/235 (14%), Positives = 62/235 (26%), Gaps = 39/235 (16%)

Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKN 263
             TA   Y++ A     Y+EA   +  I         ++ A A Y            A +
Sbjct: 19  TVTAQQNYQQLA--ELGYSEAQVGLADIQVGTRDPAQIKQAEATYRA----------AAD 66

Query: 264 NMAIALTDLGT-----KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY----GEML 314
               A   LG          E + ++  +  KKA  +     + +  L + Y        
Sbjct: 67  TSPRAQARLGRLLAAKPGATEAEHHEAESLLKKA--FANGEGNTLIPLAMLYLQYPHSFP 124

Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNLDKAVECYQMALSIKPNFSQSL 371
             +      +          EA     ++Y+ +   D     VE    A           
Sbjct: 125 NVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKA--ALNTTDICY 179

Query: 372 NNLGVVYTVQG---KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423
             L  VY  +    +     + +E     +     A     V      +     D
Sbjct: 180 VELATVYQKKQQPEQQAELLKQMEAG--VSRGTVTAQRVDSVARVLGDATLGTPD 232

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 25/244 (10%), Positives = 60/244 (24%), Gaps = 32/244 (13%)

Query: 190 YAPAYYNLGVVYSEL--MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-----DLE 242
           Y+ A   L  +                 +AA +      A   +G +   +      +  
Sbjct: 34  YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPGATEAEHH 91

Query: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 302
            A +  ++  A +         +A+             ++N      +          +A
Sbjct: 92  EAESLLKK--AFANGEGNTLIPLAMLYLQ-YPHSFP--NVNAQQQISQWQAAGY---PEA 143

Query: 303 MYNLGVAY-GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY---KDRDNLDKAVECYQ 358
                + Y  +            +              L  +Y   +  +   + ++  +
Sbjct: 144 GLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQME 203

Query: 359 MALSIKPNFSQSLNNLGVVYT----VQGKMD--AAAEMIEKAIAANPTYAEAYNNLGVLY 412
             +        +     V         G  D   A  ++EK     P    ++ +L  L 
Sbjct: 204 AGV--SRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYP---ASWVSLAQLL 258

Query: 413 RDAG 416
            D  
Sbjct: 259 YDFP 262

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 33/201 (16%), Positives = 60/201 (29%), Gaps = 20/201 (9%)

Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY---GEMLKFDMAIVF 322
            +    L  +    GD       Y++       Y++A   L        +  +   A   
Sbjct: 3   GLPDQRLANEALKRGDTVTAQQNYQQL--AELGYSEAQVGLADIQVGTRDPAQIKQAEAT 60

Query: 323 YELAFHFNPHCAEACNNLGVIYKD-----RDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377
           Y  A         A   LG +             +A    + A         +L  L ++
Sbjct: 61  YRAA---ADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKA--FANGEGNTLIPLAML 115

Query: 378 YT--VQGKMD-AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
           Y        +  A + I +  AA   Y EA     +LYR  G+    +D  E+  K   +
Sbjct: 116 YLQYPHSFPNVNAQQQISQWQAAG--YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN 173

Query: 435 SRNAGQNRLLAMNYINEGHDD 455
           + +     L  +    +  + 
Sbjct: 174 TTDICYVELATVYQKKQQPEQ 194

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 80.9 bits (199), Expect = 2e-16
 Identities = 28/224 (12%), Positives = 58/224 (25%), Gaps = 39/224 (17%)

Query: 214 YEKAALERPMYAEAYCNM--GVIYKNRGD---LESAIACYERCLAVSPNFEIAKNNMAIA 268
            E      P       N      Y   GD   L  A       +  SP F  A+   A+ 
Sbjct: 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALV 242

Query: 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328
                                      +      +  L      ++              
Sbjct: 243 --------------------DIVRHSQHPLDEKQLAALNTEIDNIVTLPE---------- 272

Query: 329 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388
              + +       V    +   D++ +     + ++ ++  +   LG VY ++G    AA
Sbjct: 273 -LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW-LNYVLLGKVYEMKGMNREAA 330

Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432
           +    A    P     Y     +++   S+   +   ++ L  +
Sbjct: 331 DAYLTAFNLRPGANTLYWIENGIFQ--TSVPYVVPYLDKFLASE 372

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 80.1 bits (197), Expect = 3e-16
 Identities = 24/130 (18%), Positives = 38/130 (29%), Gaps = 11/130 (8%)

Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYK--------DRDNLDKAVECYQMALSIK-- 364
             + A          +P    A     ++          D   L          +++   
Sbjct: 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPEL 273

Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424
            N S       V   V+GK D + + I   I    ++   Y  LG +Y   G    A DA
Sbjct: 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADA 332

Query: 425 YEQCLKIDPD 434
           Y     + P 
Sbjct: 333 YLTAFNLRPG 342

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 79.4 bits (195), Expect = 6e-16
 Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 9/169 (5%)

Query: 99  RLAFDSFSEAVKLDPQNACAHT-----HCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
                      K+ P      T     H  +L+ D+  L  A+E   + + + P +  A 
Sbjct: 177 PWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYAR 236

Query: 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYE---ALKIDPHYAPAYYNLGVVYSELMQYDTA 210
              A+V     +   L       +    +    L    + +  Y    V      + D +
Sbjct: 237 AEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDES 296

Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
                   ++  M    Y  +G +Y+ +G    A   Y     + P   
Sbjct: 297 YQAINTG-IDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 66.3 bits (161), Expect = 9e-12
 Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 18/160 (11%)

Query: 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLG-----VIYKDRDNLDKAVECYQMALSIKPN 366
           + L         E      PH      N       +++ D  +L++A E     +   P 
Sbjct: 172 KALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE 231

Query: 367 FSQSLNNLGVVYTV--------QGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAG 416
           F+ +     +V  V        + ++ A    I+  +        +  Y    V     G
Sbjct: 232 FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291

Query: 417 SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
               +  A    + ++    N     LL   Y  +G + +
Sbjct: 292 KTDESYQAINTGIDLEMSWLN---YVLLGKVYEMKGMNRE 328

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score = 76.1 bits (188), Expect = 7e-16
 Identities = 30/224 (13%), Positives = 64/224 (28%), Gaps = 37/224 (16%)

Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
               Y++ A        A   +   + + GD + A    ++          A      AL
Sbjct: 5   PGSQYQQQAEAG--DRRAQYYLADTWVSSGDYQKAEYWAQKA---------AAQGDGDAL 53

Query: 270 TDLGTKVKLEG----DINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLK--FDMAIV 321
             L  ++K+      D  Q     +KA+            L       +        AI 
Sbjct: 54  ALLA-QLKIRNPQQADYPQARQLAEKAVEAG--SKSGEIVLARVLVNRQAGATDVAHAIT 110

Query: 322 FYELAFH--FNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLG 375
             + A     +    +A   LG+IY       ++  KA E ++ + S       +    G
Sbjct: 111 LLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS-SSLSRTGYAEYWAG 169

Query: 376 VVY------TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
           +++       ++     A   +  +      +         + +
Sbjct: 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRISK 211

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 23/186 (12%)

Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESAIA 246
              A Y L   +     Y  A    +KAA +     +A   +  +        D   A  
Sbjct: 17  DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIRNPQQADYPQARQ 74

Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA--LYYNWHYADAMY 304
             E+  AV    +  +  +A  L +         D+   +   + A     +    DA  
Sbjct: 75  LAEK--AVEAGSKSGEIVLARVLVN-RQAGAT--DVAHAITLLQDAARDSESDAAVDAQM 129

Query: 305 NLGVAY--GEMLK--FDMAIVFYELAFHFNPHCAEACNNLGVIYKD------RDNLDKAV 354
            LG+ Y  G         A  +++ +         A    G++++         N  KA+
Sbjct: 130 LLGLIYASGVHGPEDDVKASEYFKGSSS-LSRTGYAEYWAGMMFQQGEKGFIEPNKQKAL 188

Query: 355 ECYQMA 360
               ++
Sbjct: 189 HWLNVS 194

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 27/174 (15%), Positives = 51/174 (29%), Gaps = 32/174 (18%)

Query: 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY---GEMLKFD 317
           A+     A   L       GD  +   + +KA        DA+  L        +   + 
Sbjct: 13  AEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAA--AQGDGDALALLAQLKIRNPQQADYP 70

Query: 318 MAIVFYELAFHFNPHCAE-----ACNNLGVIYKD----RDNLDKAVECYQMA----LSIK 364
            A    E A        E         L  +  +      ++  A+   Q A     S  
Sbjct: 71  QARQLAEKA-------VEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDA 123

Query: 365 PNFSQSLNNLGVVYT----VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
              +Q    LG++Y            A+E  + + ++      A    G++++ 
Sbjct: 124 AVDAQ--MLLGLIYASGVHGPEDDVKASEYFKGS-SSLSRTGYAEYWAGMMFQQ 174

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score = 62.2 bits (152), Expect = 3e-11
 Identities = 25/175 (14%), Positives = 48/175 (27%), Gaps = 31/175 (17%)

Query: 190 YAPAYYNLGVVYSE--LMQ-YDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DLE 242
              A   L  +         Y  A    EKA             +  +  N +    D+ 
Sbjct: 49  DGDALALLAQLKIRNPQQADYPQARQLAEKAVEAG--SKSGEIVLARVLVNRQAGATDVA 106

Query: 243 SAIACYER--CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
            AI   +     + S     A+  + +     G       D  +   Y+K +   +    
Sbjct: 107 HAITLLQDAARDSESDAAVDAQMLLGLIYAS-GVHGPE--DDVKASEYFKGSSSLS-RTG 162

Query: 301 DAMYNLGVAY----GEMLKFDM--AIVFYELAFHFNPHC----AEACNNLGVIYK 345
            A Y  G+ +       ++ +   A+ +  ++      C       C     I K
Sbjct: 163 YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS------CLEGFDTGCEEFDRISK 211

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 73.0 bits (180), Expect = 1e-15
 Identities = 25/119 (21%), Positives = 46/119 (38%)

Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
           +    H NP  A    N G     + +  +A++ Y  A+   P  ++  +N    YT   
Sbjct: 5   HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64

Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
           +   A +  E+ I   PT+ + Y             + A+D Y++ L +D   + A   
Sbjct: 65  EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 71.5 bits (176), Expect = 4e-15
 Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 7/133 (5%)

Query: 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196
             +H     +P        LA+++ + G      G+    ++ Y EA+K +P  A  Y N
Sbjct: 3   HHHHHHSHMNPD-------LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSN 55

Query: 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256
               Y++L+++  AL   E+     P + + Y       +   D   A+  Y++ L +  
Sbjct: 56  RAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115

Query: 257 NFEIAKNNMAIAL 269
           + + A +     +
Sbjct: 116 SCKEAADGYQRCM 128

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 62.6 bits (153), Expect = 5e-12
 Identities = 20/121 (16%), Positives = 43/121 (35%)

Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347
           ++    + N   A  + N G    +   +  A+  Y  A   NP  A+  +N    Y   
Sbjct: 4   HHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL 63

Query: 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
                A++  +  + ++P F +                 A ++ +KA+  + +  EA + 
Sbjct: 64  LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123

Query: 408 L 408
            
Sbjct: 124 Y 124

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 7/136 (5%)

Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
           +   +   P  A    N G     +GD   A+  Y   +  +P      +N A   T L 
Sbjct: 5   HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL- 63

Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
                  +    +   ++ +     +         A   M  +  A+  Y+ A   +  C
Sbjct: 64  ------LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117

Query: 334 AEACNNLGVIYKDRDN 349
            EA +        + N
Sbjct: 118 KEAADGYQRCMMAQYN 133

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 20/101 (19%), Positives = 40/101 (39%)

Query: 56  NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
           N    +  +  A+  Y   ++++  + + +  +  C       +LA     E ++L+P  
Sbjct: 24  NECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 83

Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156
              +T      +      +A + Y KAL  D S K AA+  
Sbjct: 84  IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY 124

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 18/80 (22%), Positives = 34/80 (42%)

Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
             +     + P+ +  + N G     +G    A +   +AI  NP  A+ Y+N    Y  
Sbjct: 3   HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62

Query: 415 AGSISLAIDAYEQCLKIDPD 434
                LA+   E+C++++P 
Sbjct: 63  LLEFQLALKDCEECIQLEPT 82

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 75.8 bits (186), Expect = 3e-15
 Identities = 42/286 (14%), Positives = 86/286 (30%), Gaps = 65/286 (22%)

Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
           +E+AA       +       IY+ R +L  A   + +                       
Sbjct: 33  FEEAA-------DLCVQAATIYRLRKELNLAGDSFLKAADYQ------------------ 67

Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH- 332
                            K         +        +        A+   E A     H 
Sbjct: 68  -----------------KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR 110

Query: 333 -----CAEACNNLGVIY-KDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTV 380
                 A     LG I   D  +  KA++CY++A             ++       +  +
Sbjct: 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170

Query: 381 QGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
            G+   A+++  K I +         +  + +   G+    A     A    ++    DP
Sbjct: 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230

Query: 434 DSRNAGQNRLLA--MNYINEGHDDKLFEAHRDWGKRFMRLYSQYTS 477
           +  ++ ++  L   ++ +NEG  ++L E  +++   FMRL     +
Sbjct: 231 NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF-DNFMRLDKWKIT 275

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 68.1 bits (166), Expect = 1e-12
 Identities = 29/184 (15%), Positives = 57/184 (30%), Gaps = 14/184 (7%)

Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
             +Y+    L  A +S+ KA           E       +     K  GN+ + +     
Sbjct: 44  ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEA-GNTYVEAYKCFKSGGNSVNAVDSLEN 102

Query: 183 ALKIDPHY------APAYYNLGVVY-SELMQYDTALGCYEKAAL------ERPMYAEAYC 229
           A++I  H       A   + LG +  ++L  Y  A+ CYE A           +  + + 
Sbjct: 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162

Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289
               +    G    A   Y + +  S    +++ ++       G       D        
Sbjct: 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222

Query: 290 KKAL 293
           ++  
Sbjct: 223 QEGQ 226

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 61.6 bits (149), Expect = 2e-10
 Identities = 31/191 (16%), Positives = 53/191 (27%), Gaps = 21/191 (10%)

Query: 89  GICLQMQNMGRLAFDSFSEAVKLDPQN------ACAHTHCGILYKDEGRLVEAAESYHKA 142
               +++    LA DSF +A     +          +      +K  G  V A +S   A
Sbjct: 44  ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103

Query: 143 LSADPSYKPAAECLAIVLTDLGTSL-KLAGNTQDGIQKYYEALKI------DPHYAPAYY 195
           +             A    +LG  L     +    I  Y  A +              + 
Sbjct: 104 IQIFTHRGQFRRG-ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162

Query: 196 NLGVVYSELMQYDTALGCYEKAA-------LERPMYAEAYCNMGVIYKNRGDLESAIACY 248
               + +   QY  A   Y K         L +    + +   G+      D  +A    
Sbjct: 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222

Query: 249 ERCLAVSPNFE 259
           +   +  PNF 
Sbjct: 223 QEGQSEDPNFA 233

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 72.8 bits (179), Expect = 3e-15
 Identities = 31/112 (27%), Positives = 53/112 (47%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
           ++   + G     R    KA++ Y  ALSI P     L+N    Y+  G+ + AAE  E 
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70

Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
           A   +P Y++A++ LG+   D      A +AYE+ ++ + +  +    R L 
Sbjct: 71  ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 69.4 bits (170), Expect = 5e-14
 Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 2/124 (1%)

Query: 145 ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204
              S  P  E  +  L   G +          I  Y +AL I P       N    YS  
Sbjct: 1   GPRSMAPTPE--SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS 58

Query: 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264
            Q++ A    E A +  P Y++A+  +G+   +  D + A   YE+ +    N       
Sbjct: 59  GQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118

Query: 265 MAIA 268
             + 
Sbjct: 119 RGLE 122

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 57.8 bits (140), Expect = 5e-10
 Identities = 25/111 (22%), Positives = 41/111 (36%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
           +D + + G A     ++  AI  Y  A    P      +N    Y      +KA E  ++
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70

Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
           A  + P +S++ + LG+          A E  EK I A           G+
Sbjct: 71  ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 1/144 (0%)

Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
           +  L   G       + ++ +  Y +AL         + N   AY    + + A    EL
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70

Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
           A   +P  ++A + LG+   D  +   A E Y+  +  + N        G + T + K++
Sbjct: 71  ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG-LETTKRKIE 129

Query: 386 AAAEMIEKAIAANPTYAEAYNNLG 409
            A    E         A A    G
Sbjct: 130 EANRGAEPPADDVDDAAGASRGAG 153

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 7/119 (5%)

Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
           +    + G       +Y  A+  Y +A    P       N    Y   G  E A    E 
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70

Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
              V P +  A + + +A  D+        D       Y+K +    +        G+ 
Sbjct: 71  ATVVDPKYSKAWSRLGLARFDM-------ADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 2/130 (1%)

Query: 56  NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
           N   +R ++  A+ LY   L     N      +            A +    A  +DP+ 
Sbjct: 19  NAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78

Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA--ECLAIVLTDLGTSLKLAGNT 173
           + A +  G+   D      A E+Y K + A+ +    A    L      +  + + A   
Sbjct: 79  SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAEPP 138

Query: 174 QDGIQKYYEA 183
            D +     A
Sbjct: 139 ADDVDDAAGA 148

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 67.2 bits (165), Expect = 9e-14
 Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 7/109 (6%)

Query: 167 LKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
           LK  GN         D +Q Y EA+K+DPH    Y N    Y++   Y  A     K   
Sbjct: 7   LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66

Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
            +P + + Y       +     E A   YE  L    N    K  +   
Sbjct: 67  LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 59.9 bits (146), Expect = 3e-11
 Identities = 20/90 (22%), Positives = 36/90 (40%)

Query: 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
           N+D A++CY  A+ + P+     +N    Y  +G    A E   K +   P + + Y+  
Sbjct: 19  NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK 78

Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
                       A   YE+ LK + ++   
Sbjct: 79  AAALEFLNRFEEAKRTYEEGLKHEANNPQL 108

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 17/109 (15%), Positives = 36/109 (33%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
            + +   G     +   D A+  Y  A   +PH     +N    Y  + +  KA E    
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63

Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
            + +KP++ +  +          + + A    E+ +       +    L
Sbjct: 64  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 18/100 (18%), Positives = 35/100 (35%)

Query: 60  SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119
           S     DAL  Y   ++ D  N   +  +      +   + A++   + V L P     +
Sbjct: 16  SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGY 75

Query: 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
           +      +   R  EA  +Y + L  + +     E L  +
Sbjct: 76  SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 7/116 (6%)

Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
                  G    + G+++ A+ CY   + + P+  +  +N + A           GD  +
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK-------GDYQK 56

Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 340
                 K +     +         A   + +F+ A   YE       +  +    L
Sbjct: 57  AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 20/112 (17%), Positives = 35/112 (31%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
           AE     G  Y  + +   AV+ Y   +   P  ++  +N             A     K
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63

Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
           AI  +P +  AY             + A++  +     D +  N    R + 
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 7/109 (6%)

Query: 167 LKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
            +L G          + ++ Y E +K  P  A  Y N     ++LM +  A+    KA  
Sbjct: 7   ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66

Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
           + P +  AY           +  SA+   +             +   I 
Sbjct: 67  KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 16/111 (14%), Positives = 33/111 (29%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
           A+     G  Y     +  A+  Y       P  A   +N         +  +A+     
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63

Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
           A+   PNF ++            +  +A E ++ A   +       +   +
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 7/105 (6%)

Query: 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188
           +     A ++Y + +   P         A   ++   +L    +  + I    +A++ DP
Sbjct: 17  KSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 69

Query: 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
           ++  AY         + +Y +AL   + A  +            +
Sbjct: 70  NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 7/120 (5%)

Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
           M AE     G  Y  + D  +A+  Y   +  +P      +N A AL  L          
Sbjct: 2   MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL-------MSF 54

Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
            + +A   KA+  + ++  A      A   + ++  A+   + A   +       +   +
Sbjct: 55  PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 7/104 (6%)

Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
            +  A+  Y +     P  A  Y N             AIA   + +   PNF  A    
Sbjct: 19  DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 78

Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
           A A   +        +    +     A   +    +      + 
Sbjct: 79  ATAQIAV-------KEYASALETLDAARTKDAEVNNGSSAREID 115

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 13/104 (12%), Positives = 34/104 (32%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
                +++ + +A+  Y  ++++   +   +  +   L        A    ++A++ DP 
Sbjct: 11  GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
              A+               A E+   A + D      +    I
Sbjct: 71  FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 381 QGKMDAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439
           QG ++ A + +E+ +   P    EAY  +G  YR  G    A++ Y+  ++++PDS    
Sbjct: 13  QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72

Query: 440 QNRLL--AMNYINEGHDDKLFEAH 461
             +++   +N+ N+   ++L   H
Sbjct: 73  ARKMVMDILNFYNKDMYNQLEHHH 96

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 60.8 bits (148), Expect = 9e-12
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPM-YAEAYCNMGVIYKNRGDLESAIACYERCL 252
                         + AL   E+     P+   EAY  MG  Y+  GD + A+  Y+  +
Sbjct: 3   QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62

Query: 253 AVSPNFEIAKNN 264
            ++P+    +  
Sbjct: 63  ELNPDSPALQAR 74

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 9/88 (10%)

Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
                L   G+ ++ +Q   E L+ +P     AYY +G  Y +L  +  AL  Y+ A   
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACY 248
            P               R  +   +  Y
Sbjct: 65  NPDSPALQ--------ARKMVMDILNFY 84

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
                  ++ +++ A++  +  L  +P    ++   +G  Y   G    A    + AI  
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 398 NPTYAEAYNN 407
           NP        
Sbjct: 65  NPDSPALQAR 74

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 55.1 bits (133), Expect = 9e-10
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CAEACNNLGVIYKDRDNLDKAVECYQ 358
              + N G         + A+   E      P    EA   +G  Y+   +  KA+  YQ
Sbjct: 7   IKELINQG-------DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQ 59

Query: 359 MALSIKPNF 367
            A+ + P+ 
Sbjct: 60  SAIELNPDS 68

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 279 EGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
           +GDI   +   ++ L        +A Y +G AY ++  +  A+  Y+ A   NP      
Sbjct: 13  QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL- 71

Query: 338 NNLGVIYKDRDNLDKAVECYQ 358
                  + R  +   +  Y 
Sbjct: 72  -------QARKMVMDILNFYN 85

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 50  DALSYANILRSRNKFVDALALYEIVLEKDSGNV-EAHIGKGICLQMQNMGRLAFDSFSEA 108
           D L     L ++    +AL   E  L+ +     EA+   G   +     + A +++  A
Sbjct: 2   DQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61

Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143
           ++L+P +                +++    Y+K +
Sbjct: 62  IELNPDSPALQAR--------KMVMDILNFYNKDM 88

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 93  QMQNMGRL--AFDSFSEAVKLDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSY 149
           ++ N G +  A  +  E ++ +P     A+   G  Y+  G   +A  +Y  A+  +P  
Sbjct: 9   ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68

Query: 150 KPAAE 154
            PA +
Sbjct: 69  -PALQ 72

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 8/74 (10%)

Query: 230 NMGVIYKNRGDLESAIACYERCLAVSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
                  N+GD+E+A+   E  L   P   + A   M  A   LG       D  + +  
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG-------DWQKALNN 57

Query: 289 YKKALYYNWHYADA 302
           Y+ A+  N      
Sbjct: 58  YQSAIELNPDSPAL 71

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 7/114 (6%)

Query: 162 DLGTSLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214
           +L    K  GN           ++ Y EA+K DP  A  Y N     ++LM++  AL   
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70

Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
           +        + + Y           +   A   YE  L V P+ E A+  +   
Sbjct: 71  DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 62.2 bits (152), Expect = 7e-12
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 2/115 (1%)

Query: 328 HFNPHCAEACNNLG-VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386
           + NP  A+   N G   +K  D    A+  Y  A+   P  +   +N     T   +   
Sbjct: 7   YINPELAQEEKNKGNEYFKKGD-YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQR 65

Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
           A +  +  I  +  + + Y             S A  AYE  L++DP +  A + 
Sbjct: 66  ALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 20/118 (16%), Positives = 37/118 (31%)

Query: 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350
           +  Y N   A    N G  Y +   +  A+  Y  A   +P  A   +N           
Sbjct: 4   RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63

Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
            +A++     + +   F +             +   A    E A+  +P+  EA   +
Sbjct: 64  QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 47.6 bits (114), Expect = 9e-07
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
            + A   P  A+   N G  Y  +GD  +A+  Y   +   P   I  +N A  LT L  
Sbjct: 3   ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL-- 60

Query: 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 334
                 +  + +      +  +  +             M ++  A   YE A   +P   
Sbjct: 61  -----MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

Query: 335 EACNNL 340
           EA   +
Sbjct: 116 EAREGV 121

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 44.5 bits (106), Expect = 9e-06
 Identities = 20/104 (19%), Positives = 37/104 (35%)

Query: 56  NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
           N    +  +  A+  Y   +++D  N   +  +  CL      + A D     ++LD + 
Sbjct: 21  NEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF 80

Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
              +              +A  +Y  AL  DPS + A E +   
Sbjct: 81  IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 165 TSLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
             LK   N        ++ I+ Y +A++++P  A  Y N  + Y     Y  ALG   +A
Sbjct: 14  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73

Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
                 Y + Y          G   +A+  YE  + V P+ + AK      
Sbjct: 74  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 63.2 bits (154), Expect = 8e-12
 Identities = 18/106 (16%), Positives = 38/106 (35%)

Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
           + A++ Y  A+ + P+ +    N  + Y        A     +AI  +  Y + Y     
Sbjct: 30  ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89

Query: 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
                G    A+  YE  +K+ P  ++A          + +   ++
Sbjct: 90  SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 135

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 9/151 (5%)

Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
           E  A      AE        Y    D E+AI  Y + + ++P+  I   N ++A      
Sbjct: 3   EPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-- 60

Query: 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 334
                      +    +A+  +  Y    Y    +   + KF  A+  YE      PH  
Sbjct: 61  -----ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115

Query: 335 EACNNLGVIYK--DRDNLDKAVECYQMALSI 363
           +A        K   +   ++A+   +   S+
Sbjct: 116 DAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 7/88 (7%)

Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
            Y+ A+  Y +A    P  A  Y N  + Y        A+    R + +   +       
Sbjct: 28  DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR 87

Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKAL 293
           A +   L       G     +  Y+  +
Sbjct: 88  AASNMAL-------GKFRAALRDYETVV 108

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 5/130 (3%)

Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
             D    + +Y +A+  N   A    N  +AY     +  A+     A   +    +   
Sbjct: 26  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 85

Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
                         A+  Y+  + +KP+   +         +  +        E+AIA +
Sbjct: 86  RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF-----ERAIAGD 140

Query: 399 PTYAEAYNNL 408
                  ++L
Sbjct: 141 EHKRSVVDSL 150

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497

 Score = 66.9 bits (162), Expect = 1e-11
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 2/108 (1%)

Query: 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
           +  + LG       +T   ++    +      +     +LG +     Q   A   Y  A
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHA 178

Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
           A   P   + Y  + ++  ++GD  + I  Y R +AV   F  A  N+
Sbjct: 179 AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL 226

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497

 Score = 58.8 bits (141), Expect = 3e-09
 Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 5/123 (4%)

Query: 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392
           C     +LG I + R+   +A   Y+ A  + P+  Q  N L ++ + +G          
Sbjct: 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC 210

Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452
           ++IA    +  A  NL      A          E   K           +     Y+++ 
Sbjct: 211 RSIAVKFPFPAASTNLQKALSKALE-----SRDEVKTKWGVSDFIKAFIKFHGHVYLSKS 265

Query: 453 HDD 455
            + 
Sbjct: 266 LEK 268

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497

 Score = 57.3 bits (137), Expect = 1e-08
 Identities = 26/186 (13%), Positives = 61/186 (32%), Gaps = 7/186 (3%)

Query: 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326
           +  + LG     +   +  V     +  Y   +   + +LG       +   A  +Y  A
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHA 178

Query: 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386
               P   +  N L ++   + +    +  Y  ++++K  F  +  NL    +   K   
Sbjct: 179 AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS---KALE 235

Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYR--DAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444
           + + ++     +          G +Y       +S   +  E+  K     +     +L+
Sbjct: 236 SRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFNSQQLV 295

Query: 445 AMNYIN 450
            +  IN
Sbjct: 296 HVTVIN 301

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497

 Score = 51.1 bits (121), Expect = 8e-07
 Identities = 18/132 (13%), Positives = 37/132 (28%)

Query: 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186
           K     + + +  H +    P     +      L  LG   +    T      Y  A ++
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL 181

Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
            P     Y  L ++ S    + T +  Y ++   +  +  A  N+        +    + 
Sbjct: 182 VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK 241

Query: 247 CYERCLAVSPNF 258
                      F
Sbjct: 242 TKWGVSDFIKAF 253

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497

 Score = 43.4 bits (101), Expect = 2e-04
 Identities = 24/183 (13%), Positives = 55/183 (30%), Gaps = 15/183 (8%)

Query: 89  GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
           G   + +N    A   +  A +L P N   +    IL   +G  +     Y ++++    
Sbjct: 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

Query: 149 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY- 207
           + PAA              +    T+ G+  + +A          +  L     +L    
Sbjct: 219 F-PAASTNLQKALSKALESRDEVKTKWGVSDFIKAFI----KFHGHVYLSKSLEKLSPLR 273

Query: 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
           +     +++   ++   ++   ++ VI          +         S   E    +   
Sbjct: 274 EKLEEQFKELLFQKAFNSQQLVHVTVI---------NLFQLHHLRDFSNETEQHTYSQDE 324

Query: 268 ALT 270
            L 
Sbjct: 325 QLC 327

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 59.6 bits (145), Expect = 7e-11
 Identities = 19/114 (16%), Positives = 40/114 (35%)

Query: 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
              +A  CY  A++  P  +    N  + Y    + + A     +A+  +    +A+  L
Sbjct: 24  KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83

Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462
           G    +  S   AI   ++   +  + R    + + +   I +       E  R
Sbjct: 84  GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERR 137

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 7/99 (7%)

Query: 166 SLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
            LK  GN         +    Y  A+  +P  A  Y N  + Y ++ Q + AL    +A 
Sbjct: 11  ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 70

Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
                  +A+  +G         + AIA  +R  +++  
Sbjct: 71  ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS-LKLAGNTQDGIQKYYEALKID 187
             +  EAA  Y +A++ +P        +A+  T+     LK+    +  +     AL++D
Sbjct: 22  GRKYPEAAACYGRAITRNPL-------VAVYYTNRALCYLKM-QQPEQALADCRRALELD 73

Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
                A++ LG    E+  YD A+   ++A
Sbjct: 74  GQSVKAHFFLGQCQLEMESYDEAIANLQRA 103

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)

Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
           +Y  A  CY +A    P+ A  Y N  + Y      E A+A   R L +      A   +
Sbjct: 24  KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83

Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKAL 293
                ++          ++ +A  ++A 
Sbjct: 84  GQCQLEM-------ESYDEAIANLQRAY 104

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 17/85 (20%), Positives = 30/85 (35%)

Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
           K+  A   Y  A   NP  A    N  + Y      ++A+   + AL +     ++   L
Sbjct: 24  KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83

Query: 375 GVVYTVQGKMDAAAEMIEKAIAANP 399
           G         D A   +++A +   
Sbjct: 84  GQCQLEMESYDEAIANLQRAYSLAK 108

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 18/88 (20%), Positives = 34/88 (38%)

Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
                +  A Y +A+  N   A    N  + Y +M + + A+     A   +    +A  
Sbjct: 22  GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 81

Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPN 366
            LG    + ++ D+A+   Q A S+   
Sbjct: 82  FLGQCQLEMESYDEAIANLQRAYSLAKE 109

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 19/98 (19%), Positives = 34/98 (34%)

Query: 56  NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
           N L    K+ +A A Y   + ++      +  + +C         A      A++LD Q+
Sbjct: 17  NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76

Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
             AH   G    +     EA  +  +A S     +   
Sbjct: 77  VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 114

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 1/131 (0%)

Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
           +  R    +A  CY  A++  P  +    N  + Y    + + A     +A+  +    +
Sbjct: 15  FVGRK-YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 73

Query: 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 463
           A+  LG    +  S   AI   ++   +  + R    + + +   I +       E  R 
Sbjct: 74  AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRI 133

Query: 464 WGKRFMRLYSQ 474
             +  +  Y  
Sbjct: 134 HQESELHSYLT 144

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 56.1 bits (135), Expect = 9e-09
 Identities = 17/88 (19%), Positives = 33/88 (37%)

Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
                +    Y  A+  +P  A  Y N  + Y ++ Q + AL    +A        +A+ 
Sbjct: 17  GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76

Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPN 257
            +G         + AIA  +R  +++  
Sbjct: 77  FLGQCQLEMESYDEAIANLQRAYSLAKE 104

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 17/92 (18%), Positives = 31/92 (33%)

Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
           K+  A   Y  A   NP  A    N  + Y      ++A+   + AL +     ++   L
Sbjct: 19  KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78

Query: 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406
           G         D A   +++A +        + 
Sbjct: 79  GQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 7/112 (6%)

Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
           A+     G           A ACY R +  +P   +   N A+    +           Q
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM-------QQPEQ 56

Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
            +A  ++AL  +     A + LG    EM  +D AI   + A+         
Sbjct: 57  ALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 19/103 (18%), Positives = 34/103 (33%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
            N L    K+ +A A Y   + ++      +  + +C         A      A++LD Q
Sbjct: 11  GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157
           +  AH   G    +     EA  +  +A S     +       
Sbjct: 71  SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)

Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
           +Y  A  CY +A    P+ A  Y N  + Y      E A+A   R L +      A   +
Sbjct: 19  KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78

Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKAL 293
                ++          ++ +A  ++A 
Sbjct: 79  GQCQLEM-------ESYDEAIANLQRAY 99

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 18/94 (19%), Positives = 35/94 (37%)

Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
                +  A Y +A+  N   A    N  + Y +M + + A+     A   +    +A  
Sbjct: 17  GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76

Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 372
            LG    + ++ D+A+   Q A S+      +  
Sbjct: 77  FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 3/93 (3%)

Query: 349 NLDKAVECYQMALSIKPNFSQS---LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
           +   A+  Y  AL +            N    +      D A     KAI  +    +A 
Sbjct: 43  DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102

Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
                     G +  A+   ++C+ ++P ++  
Sbjct: 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 170 AGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
            G+    +  Y +AL +D      A  + N    + +L  YD A     KA  +     +
Sbjct: 41  CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100

Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
           A        +  G L+ A+   +RC+++ P  ++ +  +
Sbjct: 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 10/92 (10%)

Query: 129 EGRLVEAAESYHKALSADPSYKPAAECL---AIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
            G    A  +Y +AL  D + +  A      A         LKL  +      +  +A++
Sbjct: 41  CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACH------LKL-EDYDKAETEASKAIE 93

Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
            D     A Y       +L + D A+   ++ 
Sbjct: 94  KDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 125

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 10/129 (7%)

Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTD 271
            + A       E     G      GD   A+A Y + L +    +   +   N A     
Sbjct: 18  PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAAC--- 74

Query: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
               +KL  D ++      KA+  +     A+Y    A  ++ + D A++  +      P
Sbjct: 75  ---HLKL-EDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130

Query: 332 HCAEACNNL 340
                   L
Sbjct: 131 KNKVFQEAL 139

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 11/101 (10%)

Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-------DNLDKAVECYQMALSIKPNF 367
            +  A+  Y  A   +    +      V++++R       ++ DKA      A+      
Sbjct: 43  DYGGALAAYTQALGLDATPQDQA----VLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98

Query: 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
            ++L          G++D A   +++ ++  P        L
Sbjct: 99  VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 12/96 (12%), Positives = 30/96 (31%), Gaps = 2/96 (2%)

Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
            G  ++ +  Y + +   P     Y N  +   +L +Y  A+   ++             
Sbjct: 17  QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76

Query: 230 NMGVIYKNRGDLESAIACYERCL-AVSPNFEIAKNN 264
              + Y+     + A+   +  +  V    E    +
Sbjct: 77  RSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDRS 111

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 2/109 (1%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
            E     G     +    +AV CY   ++ +P      +N  +     G+   A +M ++
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63

Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK-IDPDSRNAGQN 441
            +    T         + YR       A+ + +  +  +D       ++
Sbjct: 64  GLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDRS 111

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 17/108 (15%)

Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPA----AECLAIVLTDLGTSLKLAGNTQDGIQKY 180
           L+K +G   EA   Y + ++A P         A  L          +KL G     IQ  
Sbjct: 14  LFK-QGLYREAVHCYDQLITAQPQNPVGYSNKAMAL----------IKL-GEYTQAIQMC 61

Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 228
            + L+             + Y  L     A+G  +   +E     E Y
Sbjct: 62  QQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGY 108

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 1/88 (1%)

Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
            Y  A+ CY++    +P     Y N  +     G+   AI   ++ L  +   E      
Sbjct: 19  LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS 78

Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKAL 293
            +    L       G +   V    +  
Sbjct: 79  KLQYR-LELAQGAVGSVQIPVVEVDELP 105

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 12/108 (11%), Positives = 28/108 (25%), Gaps = 1/108 (0%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
            +     G +  +   +  A+  Y+      P      +N  +         +A++  Q 
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63

Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
            L              + Y        A   ++  +       E Y+ 
Sbjct: 64  GLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDR 110

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 8/102 (7%)

Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
            E     G     +G    A+ CY++ +   P   +  +N A+AL  L       G+  Q
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL-------GEYTQ 56

Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326
            +   ++ L Y            + Y  +     A+   ++ 
Sbjct: 57  AIQMCQQGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIP 97

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 55.9 bits (134), Expect = 2e-09
 Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 21/126 (16%)

Query: 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----------RDNLDKAVECYQM 359
           +  +L F+      E  +  NP  A+     G +  +          +  + +A+  ++ 
Sbjct: 12  FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEE 71

Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKM-----------DAAAEMIEKAIAANPTYAEAYNNL 408
           AL I P   +++  +G  YT    +           D A +  ++A+   P       +L
Sbjct: 72  ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131

Query: 409 GVLYRD 414
            +  + 
Sbjct: 132 EMTAKA 137

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 54.4 bits (130), Expect = 6e-09
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 26/138 (18%)

Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD---INQGVAYYKKALYYNWH 298
           E      E     +P            L +L     +      I + +  +++AL  +  
Sbjct: 19  EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78

Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
             +A++ +G AY               AF   P   EA          + N D A + +Q
Sbjct: 79  KDEAVWCIGNAY------------TSFAF-LTPDETEA----------KHNFDLATQFFQ 115

Query: 359 MALSIKPNFSQSLNNLGV 376
            A+  +P+ +  L +L +
Sbjct: 116 QAVDEQPDNTHYLKSLEM 133

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 52.5 bits (125), Expect = 3e-08
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 21/106 (19%)

Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI----------EKAIAANPT 400
           ++  +  +      P  + +L   G V     +  + ++            E+A+  +P 
Sbjct: 19  EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78

Query: 401 YAEAYNNLGVLYRDAGSI-----------SLAIDAYEQCLKIDPDS 435
             EA   +G  Y     +            LA   ++Q +   PD+
Sbjct: 79  KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 52.1 bits (124), Expect = 4e-08
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 17/128 (13%)

Query: 126 YKDEGRLV---EAAESYHKALSADPSYKPAAECLAIVLTDLG---TSLKLAGNTQDGIQK 179
             +  R++   +  +       ++P           VL +L    +        Q+ I K
Sbjct: 9   ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITK 68

Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQ-----------YDTALGCYEKAALERPMYAEAY 228
           + EAL IDP    A + +G  Y+               +D A   +++A  E+P      
Sbjct: 69  FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128

Query: 229 CNMGVIYK 236
            ++ +  K
Sbjct: 129 KSLEMTAK 136

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 54.8 bits (132), Expect = 9e-09
 Identities = 29/171 (16%), Positives = 49/171 (28%), Gaps = 25/171 (14%)

Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT--DLGTSLKLAGNT 173
             +H H       E    + A+      + +       E +       + G         
Sbjct: 2   GSSHHHHHHSSGRENLYFQGAKKSIYDYTDE-------EKVQSAFDIKEEGNEFFKKNEI 54

Query: 174 QDGIQKYYEALKIDPHY----------------APAYYNLGVVYSELMQYDTALGCYEKA 217
            + I KY EAL    H                      NL   Y++   Y  A+    K 
Sbjct: 55  NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114

Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
                   +A   +GV     G LE A     +  +++PN    +N+  + 
Sbjct: 115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 49.0 bits (117), Expect = 9e-07
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 16/106 (15%)

Query: 349 NLDKAVECYQMALSIKPNFSQS----------------LNNLGVVYTVQGKMDAAAEMIE 392
            +++A+  Y+ AL    +  +                   NL   Y        A +   
Sbjct: 53  EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112

Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
           K +  +    +A   LGV     G +  A +   +   ++P++ + 
Sbjct: 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 26/136 (19%)

Query: 238 RGDLESAIACYERCLAVSPNFEIAK----------------NNMAIALTDLGTKVKLEGD 281
           + ++  AI  Y+  L    + E                    N+A          K + D
Sbjct: 51  KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC------YNKNK-D 103

Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
             + + +  K L  + +   A+Y LGVA       + A      A   NP+  +  N+  
Sbjct: 104 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 163

Query: 342 VI---YKDRDNLDKAV 354
           +     K+    DK  
Sbjct: 164 LCVNKLKEARKKDKLT 179

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 53.2 bits (127), Expect = 1e-07
 Identities = 16/158 (10%), Positives = 43/158 (27%), Gaps = 19/158 (12%)

Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGV 342
            ++       +    Y +     + + ++  I+  +   +               N +  
Sbjct: 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163

Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQS-------LNNLGVVYTVQGKMDAAAEMIEKAI 395
           IY +   L K ++ ++  L        +         N      +  + + +   + KAI
Sbjct: 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223

Query: 396 A------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
                  +     + Y   G   R        I+   +
Sbjct: 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 20/166 (12%), Positives = 44/166 (26%), Gaps = 13/166 (7%)

Query: 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA------LERPMYAEAYCN 230
             K  E       +    Y +     + + Y+  +   +K        ++          
Sbjct: 101 ELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160

Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
           +  IY   G L+  I  +E+ L         +        +    + L+    + +    
Sbjct: 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220

Query: 291 KAL------YYNWHYADAMYNLGVAYGEM-LKFDMAIVFYELAFHF 329
           KA+                Y  G    ++  +       Y+ A  F
Sbjct: 221 KAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 44.4 bits (104), Expect = 7e-05
 Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 6/108 (5%)

Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
                  +Y + G L +  + + + L    +     E    V  +   +L L    ++ +
Sbjct: 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216

Query: 178 QKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
            +  +A++I             YY  G    +L   +  +    K A 
Sbjct: 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 26/143 (18%), Positives = 43/143 (30%), Gaps = 25/143 (17%)

Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
              A+  Y KA            ++    +   + +       +  A   N       + 
Sbjct: 11  LKKAIQYYVKACELN--EMFGCLSLVSNSQI--NKQKLFQYLSK--ACELNSGNGCRFLG 64

Query: 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLKFD--MAIVF 322
               + G  VK   D+ +   YY KA   N    D    LG     G+ +  +   A+  
Sbjct: 65  DFY-ENGKYVKK--DLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKT 119

Query: 323 YELAFHFNPHC----AEACNNLG 341
           +E A      C     +AC  L 
Sbjct: 120 FEKA------CRLGSEDACGILN 136

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138

 Score = 45.2 bits (108), Expect = 7e-06
 Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 12/86 (13%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK-----MDAAA 388
              C +L    +   N  K  +    A   + N       LG  Y   GK     +  AA
Sbjct: 27  MFGCLSLVSNSQI--NKQKLFQYLSKA--CELNSGNGCRFLGDFY-ENGKYVKKDLRKAA 81

Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRD 414
           +   KA        +    LG     
Sbjct: 82  QYYSKA--CGLNDQDGCLILGYKQYA 105

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 33/219 (15%), Positives = 65/219 (29%), Gaps = 34/219 (15%)

Query: 78  DSGNVEAHIGKG----------ICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127
           D   +   IG+G            +Q    G  +       V L P  A           
Sbjct: 61  DQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSI------VYLKPSYAFGSVGKEKFQI 114

Query: 128 DEGRLVEA-AESYHKALSADPSYKPAAECLAIVLT--DLGTSLKLAGNTQDGIQKYYEAL 184
                ++          + +     + E L       + GT     G  +  + +Y + +
Sbjct: 115 PPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIV 174

Query: 185 KIDPHY---------------APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
               +                  ++ NL + + +L  +  A+    KA        +   
Sbjct: 175 SWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS 234

Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
             G  +    D E A A +++ L + PN + AK  +A+ 
Sbjct: 235 RRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---KPNFS 368
            +  F+ A   +E+        +      G +Y       +A+  Y+  +S    + +FS
Sbjct: 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS 184

Query: 369 QS------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
                           NL + +       AA E   KA+  +    +  +  G  +    
Sbjct: 185 NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN 244

Query: 417 SISLAIDAYEQCLKIDPDSRNA 438
              LA   +++ L++ P+++ A
Sbjct: 245 DFELARADFQKVLQLYPNNKAA 266

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 19/167 (11%)

Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
            L  ++ A   +E  + E+   +      G +Y   G  + A+  Y++ ++         
Sbjct: 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS 184

Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYK------------KALYYNWHYADAMYNLGVAY 310
           N  A     L     L    N  + + K            KAL  + +    +   G A+
Sbjct: 185 NEEAQKAQALRLASHL----NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAH 240

Query: 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI---YKDRDNLDKAV 354
             +  F++A   ++      P+   A   L V     + +   +K +
Sbjct: 241 LAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKL 287

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 48.8 bits (116), Expect = 9e-07
 Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 12/166 (7%)

Query: 47  EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
             +  L   + L  + +   AL + + + ++     +  + K  CL       LA +  +
Sbjct: 5   PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLA 64

Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
                   N+       +    +       +   + L+A+P     A        +L   
Sbjct: 65  TIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELA-------CELAVQ 117

Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG 212
               G  ++ ++  +  LK++          G V    M   +ALG
Sbjct: 118 YNQVGRDEEALELLWNILKVNL-----GAQDGEVKKTFMDILSALG 158

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 43.4 bits (102), Expect = 6e-05
 Identities = 18/148 (12%), Positives = 40/148 (27%), Gaps = 1/148 (0%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
            + +        +  +   A+   +          +          +    + A E    
Sbjct: 6   DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLAT 65

Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
                 + S       +    Q       + +E+ +AANP   E    L V Y   G   
Sbjct: 66  IPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDE 125

Query: 420 LAIDAYEQCLKIDPD-SRNAGQNRLLAM 446
            A++     LK++        +   + +
Sbjct: 126 EALELLWNILKVNLGAQDGEVKKTFMDI 153

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 48.3 bits (114), Expect = 9e-07
 Identities = 20/153 (13%), Positives = 38/153 (24%), Gaps = 40/153 (26%)

Query: 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187
             G   EAA +  +A+    +  P                              EA    
Sbjct: 23  VAGEYDEAAANCRRAMEISHTMPP-----------------------------EEAFDHA 53

Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE-----------AYCNMGVIYK 236
              A  +  L    + L  +D AL   +KA        E           A  +  +   
Sbjct: 54  GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALD 113

Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
             G    A+  +++ + +    +         +
Sbjct: 114 GLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 32/132 (24%)

Query: 225 AEAYCNMGVIYK--NRGDLESAIACYERCLAVSPNFE------------IAKNNMAIALT 270
             AY  +    +    G+ + A A   R + +S                     +A AL 
Sbjct: 9   VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 68

Query: 271 DLGTKVKLEGDINQGVAYYKKALYYNWH-----------YADAMYNLGVAYGEMLKFDMA 319
            L          ++ +    KAL+Y              +  A+Y+  +A   + +   A
Sbjct: 69  GLR-------SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEA 121

Query: 320 IVFYELAFHFNP 331
           +  ++       
Sbjct: 122 MPEFKKVVEMIE 133

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 15/143 (10%)

Query: 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---KPNF 367
             +  F+ A   +E+        A      G +Y       +AV  Y   +S    +   
Sbjct: 245 VTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL 304

Query: 368 SQS------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415
           S+               NL + Y    +   A E  +KA+  +    +     G      
Sbjct: 305 SEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM 364

Query: 416 GSISLAIDAYEQCLKIDPDSRNA 438
                A   +E+ L+++P ++ A
Sbjct: 365 NEFESAKGDFEKVLEVNPQNKAA 387

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 15/128 (11%)

Query: 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---------------YAPAYYNLGV 199
             A ++ + GT     G     + +Y + +                       A+ NL +
Sbjct: 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325

Query: 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
            Y +L +Y  A+ C +KA        +     G       + ESA   +E+ L V+P  +
Sbjct: 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385

Query: 260 IAKNNMAI 267
            A+  +++
Sbjct: 386 AARLQISM 393

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 10/115 (8%)

Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALS--------ADPSYKPAAECLAIVLTDL 163
             + A      G +Y   G+ ++A   Y K +S        ++   K +   L     +L
Sbjct: 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323

Query: 164 G-TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
               LKL       ++   +AL +D       Y  G     + ++++A G +EK 
Sbjct: 324 AMCYLKL-REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 377

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 165 TSLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
             LK   N        ++ I+ Y +A++++P  A  Y N  + Y     Y  ALG   +A
Sbjct: 7   EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66

Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
                 Y + Y          G   +A+  YE  + V P+ + AK    
Sbjct: 67  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 21/105 (20%), Positives = 38/105 (36%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
           AE        Y    + + A++ Y  A+ + P+ +    N  + Y        A     +
Sbjct: 6   AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65

Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
           AI  +  Y + Y          G    A+  YE  +K+ P  ++A
Sbjct: 66  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 110

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 33/241 (13%), Positives = 59/241 (24%), Gaps = 26/241 (10%)

Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
           + D F+E    D     A          +   +  A    +           +  + I +
Sbjct: 25  SLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQL------SGSVQISM 78

Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
           + L   + + G   D        L I   +A      G        Y  A+   E A + 
Sbjct: 79  STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQG-------NYADAMEALEAAPVA 131

Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF--EIAKNNMAIALTDLGTKVKL 278
              +  A+    V+Y         I   +        F    A     +A  +L      
Sbjct: 132 GSEHLVAW-MKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL---- 186

Query: 279 EGDINQGVAYYKKAL---YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
                +      +A              + L +A         A+   E     +P    
Sbjct: 187 ---FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKV 243

Query: 336 A 336
           A
Sbjct: 244 A 244

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 22/135 (16%), Positives = 37/135 (27%), Gaps = 28/135 (20%)

Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184
           L+  +    EA ++Y  AL+                       +L            E +
Sbjct: 21  LFV-QKDYKEAIDAYRDALT-----------------------RLDTLILREKPGEPEWV 56

Query: 185 KIDPHYAPAYYNLGVVYSELMQYDTALG-CYEKAALER-PMYAEAYCNMGVIYKNRGDLE 242
           ++D    P Y N+   Y  +     A     E   L+R     +A             L+
Sbjct: 57  ELDRKNIPLYANMSQCYLNIGDLHEAEETSSE--VLKREETNEKALFRRAKARIAAWKLD 114

Query: 243 SAIACYERCLAVSPN 257
            A    +  L   P 
Sbjct: 115 EAEEDLKLLLRNHPA 129

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 18/113 (15%)

Query: 349 NLDKAVECYQMALSIKPNFSQS------------------LNNLGVVYTVQGKMDAAAEM 390
           +  +A++ Y+ AL+                            N+   Y   G +  A E 
Sbjct: 26  DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85

Query: 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443
             + +    T  +A          A  +  A +  +  L+  P + +     +
Sbjct: 86  SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 22/220 (10%), Positives = 46/220 (20%), Gaps = 36/220 (16%)

Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
           +           E Y          G  E A    ER + +S    +             
Sbjct: 202 HNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFL------------- 248

Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
                                 + +Y   M    V YG++ +             F+   
Sbjct: 249 ----------------------SLYYGLVMDEEAV-YGDLKRKYSMGEAESAEKVFSKEL 285

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
                N       +  L+   + +    +        +    + Y   G       +   
Sbjct: 286 DLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345

Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
            +  +P          +     G    A   +++  K   
Sbjct: 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEKTSR 385

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 21/156 (13%), Positives = 42/156 (26%), Gaps = 17/156 (10%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
             A     V      +        ++        A+     G      + L++A++ Y+M
Sbjct: 145 PMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEM 204

Query: 360 ALSI---KPNFSQS--------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
           A++       F                   N+        + D A       +       
Sbjct: 205 AIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP 264

Query: 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
           +A    G    + G +  A D + +  K  PD +  
Sbjct: 265 KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI 300

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 17/131 (12%)

Query: 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----------------PAYYNL 197
             A      G SL      ++ +Q+Y  A+                        P + N+
Sbjct: 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNI 236

Query: 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
                +L +YD A+G       E     +A    G      G ++SA   + +    +P+
Sbjct: 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296

Query: 258 FEIAKNNMAIA 268
            +  +  +   
Sbjct: 297 DKAIRRELRAL 307

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 24/210 (11%), Positives = 55/210 (26%), Gaps = 10/210 (4%)

Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY-------Y 289
                +  +  YE+CL V  +        A  L      +  +GD+N    +       Y
Sbjct: 28  QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87

Query: 290 KKALYYNWHYADAMYNLGVAYGEML-KFDMAI-VFYELAFHFNPHCAEACNNLGVIYKDR 347
           ++A+         +Y     Y E   K++    ++  L    +              +  
Sbjct: 88  ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 147

Query: 348 DNLDKAVECYQMAL-SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406
           + +      ++ A    +      +    + Y        A ++ E  +       E   
Sbjct: 148 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 207

Query: 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436
                       +     +E+ L       
Sbjct: 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
           +G++  A E++ +AI A+P  A   ++   L    G    A +   Q +K+ P+      
Sbjct: 10  EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 69

Query: 441 N 441
            
Sbjct: 70  Q 70

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 32/194 (16%)

Query: 87  GKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA-------ESY 139
           G G+   ++N+         E     P   C    CG L + +   +            +
Sbjct: 155 GMGVAKILENVE-----VKGEK----PAKLCVIAECGELKEGDDWGIFPKDGSGDSHPDF 205

Query: 140 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL--------------- 184
            +    D         ++  L ++G +   + N +  I+KY + L               
Sbjct: 206 PEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADG 265

Query: 185 -KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES 243
            K+ P       N+G    ++  +  A+    +A    P   +A       ++   + + 
Sbjct: 266 AKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQ 325

Query: 244 AIACYERCLAVSPN 257
           A+A  ++   ++P 
Sbjct: 326 ALADLKKAQEIAPE 339

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	689
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-53
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-36
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-34
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-28
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-11
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-39
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-36
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-35
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	7e-30
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-28
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	9e-26
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-06
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	5e-26
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-17
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	4e-11
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-10
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-25
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-24
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	7e-19
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-16
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	5e-10
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-25
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-24
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	5e-12
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	5e-11
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-08
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	7e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	9e-21
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	4e-19
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	3e-15
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	4e-14
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	5e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	5e-18
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-14
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-09
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	4e-17
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	2e-08
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	1e-07
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-16
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-16
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	8e-16
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-15
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-14
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-14
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-13
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-13
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-12
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-11
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	7e-14
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-11
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-11
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	9e-11
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-10
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	9e-10
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-08
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-07
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	7e-07
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	7e-06
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	6e-13
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-10
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	4e-10
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-09
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	4e-06
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	8e-06
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	1e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	2e-12
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	3e-11
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	2e-10
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	1e-09
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	9e-09
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	6e-05
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	0.001
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-10
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	9e-07
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-05
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	4e-10
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	1e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	1e-07
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	3e-05
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	3e-04
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	4e-10
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	2e-09
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	3e-08
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	0.004
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	6e-10
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	7e-09
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	4e-07
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	1e-06
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	1e-04
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	3e-04
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	6e-10
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	7e-10
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	1e-08
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	3e-07
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	1e-05
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	0.001
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-09
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	8e-09
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-07
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	7e-07
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-06
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-05
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	9e-05
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	9e-08
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	4e-04
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	7e-07
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	2e-04
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	8e-04
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	2e-06
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	4e-06
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	0.002
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	5e-04
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	6e-04
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	0.001
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	0.002
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	0.004
d1zu2a1	145	a.118.8.1 (A:1-145) Mitochondrial import receptor	0.002
d1zu2a1	145	a.118.8.1 (A:1-145) Mitochondrial import receptor	0.002

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  185 bits (469), Expect = 7e-53
 Identities = 98/392 (25%), Positives = 166/392 (42%), Gaps = 34/392 (8%)

Query: 52  LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
           +  A+       F  A      +  ++  N    +              +    + A+K 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
           +P  A A+++ G +YK+ G+L EA E Y  AL   P +      LA  L   G       
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 172 NTQDG---------------------------IQKYYEALKIDPHYAPAYYNLGVVYSEL 204
                                              Y +A++  P++A A+ NLG V++  
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182

Query: 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264
            +   A+  +EKA    P + +AY N+G + K     + A+A Y R L++SPN  +   N
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242

Query: 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324
           +A    + G        I+  +  Y++A+    H+ DA  NL  A  E      A   Y 
Sbjct: 243 LACVYYEQG-------LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295

Query: 325 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384
            A    P  A++ NNL  I +++ N+++AV  Y+ AL + P F+ + +NL  V   QGK+
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355

Query: 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
             A    ++AI  +PT+A+AY+N+G   ++  
Sbjct: 356 QEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (348), Expect = 3e-36
 Identities = 77/322 (23%), Positives = 135/322 (41%), Gaps = 9/322 (2%)

Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
             +L      AG+ +   +   +  + +P        L  ++ +  + D +      A  
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
           + P+ AEAY N+G +YK RG L+ AI  Y   L + P+F     N+A         +   
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA-------ALVAA 114

Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
           GD+   V  Y  AL YN        +LG     + + + A   Y  A    P+ A A +N
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174

Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
           LG ++  +  +  A+  ++ A+++ PNF  +  NLG V       D A     +A++ +P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 459
            +A  + NL  +Y + G I LAID Y + +++ P   +A  N  LA     +G   +  +
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN--LANALKEKGSVAEAED 292

Query: 460 AHRDWGKRFMRLYSQYTSWDNT 481
            +    +          +  N 
Sbjct: 293 CYNTALRLCPTHADSLNNLANI 314

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (336), Expect = 1e-34
 Identities = 69/260 (26%), Positives = 117/260 (45%), Gaps = 14/260 (5%)

Query: 90  ICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149
             L+       A   + +A++  P  A A ++ G ++  +G +  A   + KA++ DP++
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

Query: 150 KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209
             A         +LG  LK A      +  Y  AL + P++A  + NL  VY E    D 
Sbjct: 203 LDA-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255

Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
           A+  Y +A   +P + +AYCN+    K +G +  A  CY   L + P    + NN+A   
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315

Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329
            + G       +I + V  Y+KAL     +A A  NL     +  K   A++ Y+ A   
Sbjct: 316 REQG-------NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368

Query: 330 NPHCAEACNNLGVIYKDRDN 349
           +P  A+A +N+G   K+  +
Sbjct: 369 SPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (287), Expect = 3e-28
 Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 7/189 (3%)

Query: 52  LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
           ++  N+L+    F  A+A Y   L     +   H         Q +  LA D++  A++L
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266

Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
            P    A+ +     K++G + EA + Y+ AL   P++  +   LA +  + G       
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG------- 319

Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231
           N ++ ++ Y +AL++ P +A A+ NL  V  +  +   AL  Y++A    P +A+AY NM
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379

Query: 232 GVIYKNRGD 240
           G   K   D
Sbjct: 380 GNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 2e-11
 Identities = 19/196 (9%), Positives = 42/196 (21%)

Query: 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432
            L       G  +AA     +     P        L  ++     +  +       +K +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 433 PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGY 492
           P    A  N         +  +      H    K          +       +    +  
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123

Query: 493 VSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG 552
                  +   Y + + L        ++    A      +T           G   +  G
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183

Query: 553 IDEKKVAAMVREDKID 568
                +    +   +D
Sbjct: 184 EIWLAIHHFEKAVTLD 199

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (378), Expect = 2e-39
 Identities = 31/237 (13%), Positives = 68/237 (28%), Gaps = 11/237 (4%)

Query: 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236
            Q   +A  +      +      V++           Y+K  +    YA        ++ 
Sbjct: 6   AQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWN 62

Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296
           +    ++ I   +       N   ++    +            G   Q +         +
Sbjct: 63  HA--FKNQITTLQGQAKNRANPNRSEVQANL----SLFLEAASGFYTQLLQELCTVFNVD 116

Query: 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356
                    LG+   +       +     +   +  C     +LG I + R+   +A   
Sbjct: 117 LPCRVKSSQLGIISNKQTHTSAIVKPQSSSC--SYICQHCLVHLGDIARYRNQTSQAESY 174

Query: 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
           Y+ A  + P+  Q  N L ++ + +G          ++IA    +  A  NL     
Sbjct: 175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (357), Expect = 1e-36
 Identities = 37/271 (13%), Positives = 84/271 (30%), Gaps = 20/271 (7%)

Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI-- 267
           +     +A + +    ++      ++ +R  L+     Y++ L     + + K       
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW 61

Query: 268 --ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
             A  +  T ++ +          +     +     A             +   +     
Sbjct: 62  NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGF----------YTQLLQELCT 111

Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
            F+ +  C    + LG+I   + +    V+    +          L +LG +   + +  
Sbjct: 112 VFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSS--CSYICQHCLVHLGDIARYRNQTS 169

Query: 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
            A      A    P+  + YN L +L    G     I  Y + + +      A  N   A
Sbjct: 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229

Query: 446 MNYINEGHDD-KLFEAHRDWGKRFMRLYSQY 475
           ++   E  D+ K      D+ K F++ +   
Sbjct: 230 LSKALESRDEVKTKWGVSDFIKAFIKFHGHV 260

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (349), Expect = 2e-35
 Identities = 42/324 (12%), Positives = 93/324 (28%), Gaps = 31/324 (9%)

Query: 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP 192
           +++A+   +A         +    A V T       L          Y + L  D  YA 
Sbjct: 3   LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQ---ALQ-------DLYQKMLVTDLEYAL 52

Query: 193 AYYNLGVVYSELMQYDTALGCYEKAA--LERPMYAEAYCNM-GVIYKNRGDLESAIACYE 249
                  +++    +   +   +  A     P  +E   N+   +    G     +    
Sbjct: 53  DKKVEQDLWNHA--FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELC 110

Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
               V     +  + + I               +  V     +  Y       + +LG  
Sbjct: 111 TVFNVDLPCRVKSSQLGIISNKQT-------HTSAIVKPQSSSCSYI--CQHCLVHLGDI 161

Query: 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369
                +   A  +Y  A    P   +  N L ++   + +    +  Y  ++++K  F  
Sbjct: 162 ARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221

Query: 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL-GVLYR--DAGSISLAIDAYE 426
           +  NL    +   +     +           + +A+    G +Y       +S   +  E
Sbjct: 222 ASTNLQKALSKALESRDEVKTKW----GVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLE 277

Query: 427 QCLKIDPDSRNAGQNRLLAMNYIN 450
           +  K     +     +L+ +  IN
Sbjct: 278 EQFKELLFQKAFNSQQLVHVTVIN 301

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 7e-30
 Identities = 39/215 (18%), Positives = 70/215 (32%), Gaps = 11/215 (5%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
           A +  SR    D    Y+ +L  D                Q++   AF +    ++   +
Sbjct: 27  AEVWTSRQALQDL---YQKMLVTDLEYALDK------KVEQDLWNHAFKNQITTLQGQAK 77

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
           N        +       L  A+  Y + L    +         +  + LG       +T 
Sbjct: 78  NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTS 137

Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
             ++    +      +     +LG +     Q   A   Y  AA   P   + Y  + ++
Sbjct: 138 AIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL 195

Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
             ++GD  + I  Y R +AV   F  A  N+  AL
Sbjct: 196 ASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  115 bits (288), Expect = 1e-28
 Identities = 29/321 (9%), Positives = 72/321 (22%), Gaps = 29/321 (9%)

Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
           +A     +       Y+ A +        +    +     +  ++   + L  +P +A  
Sbjct: 13  QAEAKRLEREQKLKLYQSATQ-------AVFQKRQAGELDESVLELTSQILGANPDFATL 65

Query: 194 YYNLGVVYSEL----------MQYDTALGCYEKAALERPMYAEAYCNMG--VIYKNRGDL 241
           +     V   L                LG  E      P     + +    +      + 
Sbjct: 66  WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125

Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301
              +    R L          +             +      + +A+    +  N+    
Sbjct: 126 ARELELCARFLEADERNFHCWDYRR------FVAAQAAVAPAEELAFTDSLITRNFSNYS 179

Query: 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361
           + +       ++     +     L  +      E   N        D  D++   Y   L
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA----FFTDPNDQSAWFYHRWL 235

Query: 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 421
             +              TV      + + +++    N         L             
Sbjct: 236 LGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 295

Query: 422 IDAYEQCLKIDPDSRNAGQNR 442
           +  +     +DP       + 
Sbjct: 296 LQYFSTLKAVDPMRAAYLDDL 316

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  106 bits (265), Expect = 9e-26
 Identities = 29/291 (9%), Positives = 72/291 (24%), Gaps = 17/291 (5%)

Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG---TSLKLAGNTQDGIQKYY 181
             +         E   + L A+P +     C   VL  L    +  + A   +  +    
Sbjct: 38  KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLE 97

Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYD--TALGCYEKAA-LERPMYAEAYCNMGVIYKNR 238
             L+++P     +++   + S L + +    L    +    +   +        V  +  
Sbjct: 98  SCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA 157

Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
                 +A  +  +  + +   + +  +  L  L                 +        
Sbjct: 158 VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL-------HPQPDSGPQGRLPENVLLK 210

Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
             + + N           D +  FY             C           +  ++ +  Q
Sbjct: 211 ELELVQNA----FFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQ 266

Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409
                      ++  L              +      A +P  A   ++L 
Sbjct: 267 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 317

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 7/101 (6%), Positives = 17/101 (16%)

Query: 50  DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
             L         +    +   Y   L   +  +           +      +     E  
Sbjct: 210 KELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELE 269

Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150
             +                     E  + +    + DP   
Sbjct: 270 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 310

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 11/147 (7%), Positives = 37/147 (25%), Gaps = 11/147 (7%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
           + +L   +   D+     +        +E            +    +   +   +    +
Sbjct: 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAE 240

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
                             +E+ +   +    +           + +  L  +L      +
Sbjct: 241 PLFRCELSVEKSTVLQSELESCKELQELEPENKWC-------LLTIILLMRALDPLLYEK 293

Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVY 201
           + +Q +     +DP  A    +L   +
Sbjct: 294 ETLQYFSTLKAVDPMRAAYLDDLRSKF 320

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 5e-26
 Identities = 28/242 (11%), Positives = 68/242 (28%), Gaps = 13/242 (5%)

Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280
              + + Y     + +     E A       + ++       +   + L  L        
Sbjct: 39  SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ------K 92

Query: 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 340
           D+++ + Y    +          ++  V    +      + F     + +     A  + 
Sbjct: 93  DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 152

Query: 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE------KA 394
             + ++    D  ++     L      +   N    V +     +  A +        + 
Sbjct: 153 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 212

Query: 395 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 454
           I   P    A+N L  + +D G +S   +   Q L + P   +      L   Y +   +
Sbjct: 213 IKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLEN 271

Query: 455 DK 456
             
Sbjct: 272 QC 273

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (198), Expect = 3e-17
 Identities = 27/275 (9%), Positives = 73/275 (26%), Gaps = 12/275 (4%)

Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
            +    +    + +   + + + R   A +    A+  + +         ++L  L   L
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
                    +      ++  P     +++  V+   L      L        +      A
Sbjct: 95  HEE------MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 148

Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287
           + +   + +     ++ +   ++ L          N     +++          + + V 
Sbjct: 149 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT-GYNDRAVLEREVQ 207

Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYK 345
           Y  + +    H   A   L     +                  P          L  IY+
Sbjct: 208 YTLEMIKLVPHNESAWNYLKGIL-QDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266

Query: 346 D--RDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 378
           D   +  D   +    AL +    ++  + +   Y
Sbjct: 267 DMLENQCDNKEDILNKALELCEILAKEKDTIRKEY 301

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (151), Expect = 4e-11
 Identities = 29/247 (11%), Positives = 63/247 (25%), Gaps = 8/247 (3%)

Query: 83  EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142
           + +      LQ       AF    +A++L+  N        +L K   + +    +Y  A
Sbjct: 44  DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 103

Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202
           +  +                    ++   +    ++   + L  D     A+ +   V  
Sbjct: 104 IIEEQPKNYQVWH------HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ 157

Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
           E   +D  L   ++   E       +     +  N                     ++  
Sbjct: 158 EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP 217

Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--FDMAI 320
           +N +      G            +      L  +      +  L   Y +ML+   D   
Sbjct: 218 HNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277

Query: 321 VFYELAF 327
                A 
Sbjct: 278 DILNKAL 284

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 1e-10
 Identities = 32/254 (12%), Positives = 65/254 (25%), Gaps = 17/254 (6%)

Query: 49  KDALSY-ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107
           +D   Y   +L+   +   A  L    +E ++ N      + + L+             E
Sbjct: 43  RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ------KDLHE 96

Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
            +               ++     LVE      + L                       +
Sbjct: 97  EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI 156

Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL------MQYDTALGCYEKAALER 221
           +      + +Q   + LK D      +     V S           +  +    +     
Sbjct: 157 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 216

Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
           P    A+  +  I ++RG L        + L + P+         +       +  LE  
Sbjct: 217 PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLV---DIYEDMLENQ 272

Query: 282 INQGVAYYKKALYY 295
            +       KAL  
Sbjct: 273 CDNKEDILNKALEL 286

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 1e-06
 Identities = 4/66 (6%), Positives = 22/66 (33%)

Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452
             I  +  + + Y+    + +       A       ++++  +      R + +  + + 
Sbjct: 34  VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 93

Query: 453 HDDKLF 458
             +++ 
Sbjct: 94  LHEEMN 99

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 1e-25
 Identities = 46/266 (17%), Positives = 89/266 (33%), Gaps = 10/266 (3%)

Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
           + G      G+  + +  +  A++ DP +  A+  LG   +E  Q   A+    +    +
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83

Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD--------LG 273
           P    A   + V + N      A       L  +P +                     + 
Sbjct: 84  PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143

Query: 274 TKVKLEGDINQGVAYYKKAL--YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
             +  +    +    +  A+         D    LGV +    ++D A+  +  A    P
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 203

Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391
           +     N LG    + +  ++AV  Y+ AL ++P + +S  NLG+     G    A E  
Sbjct: 204 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 263

Query: 392 EKAIAANPTYAEAYNNLGVLYRDAGS 417
            +A+             G +  +  S
Sbjct: 264 LEALNMQRKSRGPRGEGGAMSENIWS 289

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 4e-24
 Identities = 53/297 (17%), Positives = 100/297 (33%), Gaps = 11/297 (3%)

Query: 177 IQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
             K Y+  + +P    P  +  G+   +      A+  +E A  + P + EA+  +G   
Sbjct: 4   YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ 63

Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK--------LEGDINQGVA 287
                   AI+   RCL + P+ + A   +A++ T+   + +        L         
Sbjct: 64  AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 123

Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNNLGVIYK 345
                             +  +      F      +   +         +    LGV++ 
Sbjct: 124 VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 183

Query: 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
                DKAV+C+  ALS++PN     N LG       + + A     +A+   P Y  + 
Sbjct: 184 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243

Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462
            NLG+   + G+   A++ + + L +   SR            I       L    +
Sbjct: 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 300

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (211), Expect = 7e-19
 Identities = 49/338 (14%), Positives = 101/338 (29%), Gaps = 42/338 (12%)

Query: 71  YEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130
           Y+   E    +      +G+    +     A   F  AV+ DP++  A  + G    +  
Sbjct: 8   YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 67

Query: 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190
           + + A  +  + L   P  + A   LA+  T+           +   +   + L+  P Y
Sbjct: 68  QELLAISALRRCLELKPDNQTALMALAVSFTN-------ESLQRQACEILRDWLRYTPAY 120

Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
           A                                   +   +G +  +          +  
Sbjct: 121 AHLVTPAEEGAGGAGLGP------------------SKRILGSLLSD-SLFLEVKELFLA 161

Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 310
            + + P               LG    L G+ ++ V  +  AL    +       LG   
Sbjct: 162 AVRLDPTSIDPDVQC-----GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL 216

Query: 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370
               + + A+  Y  A    P    +  NLG+   +     +AVE +  AL+++      
Sbjct: 217 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 276

Query: 371 -----------LNNLGVVYTVQGKMDAAAEMIEKAIAA 397
                       + L +  ++ G+ DA      + ++ 
Sbjct: 277 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 314

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (194), Expect = 1e-16
 Identities = 53/325 (16%), Positives = 99/325 (30%), Gaps = 40/325 (12%)

Query: 49  KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108
                            +A+ L+E  +++D  ++EA    G          LA  +    
Sbjct: 20  PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC 79

Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD------ 162
           ++L P N  A     + + +E    +A E     L   P+Y                   
Sbjct: 80  LELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 139

Query: 163 --LGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
             +  SL       +  + +  A+++            LGV+++   +YD A+ C+  A 
Sbjct: 140 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 199

Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
             RP     +  +G    N    E A+A Y R L + P +  ++ N+ I+  +L      
Sbjct: 200 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL------ 253

Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
            G   + V ++ +AL             G     +                        +
Sbjct: 254 -GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW-----------------------S 289

Query: 339 NLGVIYKDRDNLDKAVECYQMALSI 363
            L +        D         LS 
Sbjct: 290 TLRLALSMLGQSDAYGAADARDLST 314

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 5e-10
 Identities = 19/149 (12%), Positives = 40/149 (26%), Gaps = 4/149 (2%)

Query: 322 FYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377
            Y+  + F               G+      +L  AV  ++ A+   P   ++   LG  
Sbjct: 3   TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT 62

Query: 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437
                +   A   + + +   P    A   L V + +      A +     L+  P   +
Sbjct: 63  QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 122

Query: 438 AGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
                         G   ++  +      
Sbjct: 123 LVTPAEEGAGGAGLGPSKRILGSLLSDSL 151

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score =  104 bits (259), Expect = 1e-25
 Identities = 43/262 (16%), Positives = 86/262 (32%), Gaps = 17/262 (6%)

Query: 163 LGTSLKLAGNTQDGIQKYYEALKI----DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
           L   L+     +  + +  + L      D   A   Y  GV+Y  L     A   + +A 
Sbjct: 5   LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64

Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
             RP   E +  +G+     G+ ++A   ++  L + P +  A  N  IAL         
Sbjct: 65  AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG------ 118

Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEA 336
            G               + +       L +A  ++ +     V  +     +        
Sbjct: 119 -GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI 177

Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
                    ++  +++         S+  + S++   LG  Y   G +D+A  + + A+A
Sbjct: 178 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237

Query: 397 ANPTYAEAYNN----LGVLYRD 414
            N      +      L +L +D
Sbjct: 238 NNVHNFVEHRYALLELSLLGQD 259

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (248), Expect = 4e-24
 Identities = 42/261 (16%), Positives = 81/261 (31%), Gaps = 13/261 (4%)

Query: 197 LGVVYSELMQYDTALGCYEKA----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
           L V     +Q +  L   E+     AL     A+     GV+Y + G    A   + + L
Sbjct: 5   LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64

Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
           A+ P+     N + I LT  G       D           L   ++YA    N G+A   
Sbjct: 65  AIRPDMPEVFNYLGIYLTQAGNF-----DAAYEAFDSVLELDPTYNYA--HLNRGIALYY 117

Query: 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALSIKPNFSQS 370
             +  +A       +  +P+       L +  +  D          +      +      
Sbjct: 118 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI 177

Query: 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430
           +       + Q  M+          +     +E    LG  Y   G +  A   ++  + 
Sbjct: 178 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237

Query: 431 IDPDSRNAGQNRLLAMNYINE 451
            +  +    +  LL ++ + +
Sbjct: 238 NNVHNFVEHRYALLELSLLGQ 258

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 64.5 bits (155), Expect = 5e-12
 Identities = 42/265 (15%), Positives = 80/265 (30%), Gaps = 20/265 (7%)

Query: 55  ANILRSRNKFVDALALYEIVLEK----DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
           A  L+   +    LA  E +L      D    +    +G+      +  LA + FS+A+ 
Sbjct: 6   AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 65

Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
           + P       + GI     G    A E++   L  DP+Y  A     I L          
Sbjct: 66  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG------- 118

Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA--LGCYEKAALERPMYAEAY 228
           G  +          + DP+       L +   +L +      L  + + + +        
Sbjct: 119 GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIV 178

Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
                    +  +E   A      +++ +       +      L       GD++   A 
Sbjct: 179 EFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL-------GDLDSATAL 231

Query: 289 YKKALYYNWHYADAMYNLGVAYGEM 313
           +K A+  N H         +    +
Sbjct: 232 FKLAVANNVHNFVEHRYALLELSLL 256

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 61.4 bits (147), Expect = 5e-11
 Identities = 31/192 (16%), Positives = 58/192 (30%)

Query: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
           L   ++ E  + +           +   A  +Y  GV Y  +    +A   +  A    P
Sbjct: 9   LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP 68

Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391
              E  N LG+      N D A E +   L + P ++ +  N G+     G+   A + +
Sbjct: 69  DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDL 128

Query: 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 451
                 +P        L +  +            +   K D +            N   +
Sbjct: 129 LAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ 188

Query: 452 GHDDKLFEAHRD 463
              ++L     D
Sbjct: 189 TLMERLKADATD 200

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 4/177 (2%)

Query: 306 LGVAYGEMLKFDMAIVFYELAFHF----NPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361
           L V     L+ ++ +   E         +   A+     GV+Y        A   +  AL
Sbjct: 5   LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64

Query: 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 421
           +I+P+  +  N LG+  T  G  DAA E  +  +  +PTY  A+ N G+     G   LA
Sbjct: 65  AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124

Query: 422 IDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSW 478
            D      + DP+         LA   ++E    ++ + H +   +    ++    +
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY 181

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 14/111 (12%), Positives = 32/111 (28%)

Query: 54  YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
            A       +  + L  +    +K+             +  Q +        ++   L  
Sbjct: 147 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 206

Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
             +  + + G  Y   G L  A   +  A++ +           + L+ LG
Sbjct: 207 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLG 257

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (99), Expect = 7e-05
 Identities = 16/153 (10%), Positives = 32/153 (20%), Gaps = 9/153 (5%)

Query: 56  NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
             L    +   A        + D  +    +   +  Q  +  +          K D + 
Sbjct: 113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 172

Query: 116 ACAHTHCGILYKDE--GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
              +     L        +           S           L      LG       + 
Sbjct: 173 WGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG-------DL 225

Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206
                 +  A+  + H    +    +  S L Q
Sbjct: 226 DSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 92.3 bits (227), Expect = 9e-21
 Identities = 34/301 (11%), Positives = 76/301 (25%), Gaps = 34/301 (11%)

Query: 170 AGNTQDGIQKYYEALKIDP-----HYAPAYYNLGVVYSELMQYDTALGCYEKA------A 218
            GN  +  +    AL+  P         A   LG V     +   +L   ++        
Sbjct: 25  DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 84

Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK-NNMAIALTDLGTKVK 277
                   +      I   +G L++A    E+   +     + +       +      + 
Sbjct: 85  DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 144

Query: 278 LEGDINQGVAYYKKALYY-----NWHYADAMYNLGVAYGEMLKFD-------MAIVFYEL 325
               +++  A  +  +              +  L          D               
Sbjct: 145 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 204

Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL----NNLGVVYTVQ 381
             + +   + A     + ++   +   A    +     +   +  L     N+     + 
Sbjct: 205 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 264

Query: 382 GKMDAAAEMIEKAIAAN------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
           G+ + A  ++E+                    L  LY  AG  S A       LK+   +
Sbjct: 265 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 324

Query: 436 R 436
            
Sbjct: 325 G 325

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 87.3 bits (214), Expect = 4e-19
 Identities = 37/317 (11%), Positives = 78/317 (24%), Gaps = 29/317 (9%)

Query: 75  LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-----ACAHTHCGILYKDE 129
           + +D+ + E +  +            A      A++  P         A +  G +   +
Sbjct: 5   IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK 64

Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
           G L  +     +       +          L      L   G  Q   +   +A ++   
Sbjct: 65  GELTRSLALMQQTEQMARQH-DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 123

Query: 190 Y--------APAYYNLGVVYSELMQYDTALGCYEKAALERP-----MYAEAYCNMGVIYK 236
                             +     + D A                    +    +     
Sbjct: 124 QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 183

Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL--- 293
            RGDL++A +   R   +  N +   + ++ A        ++ GD      + +      
Sbjct: 184 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 243

Query: 294 -YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKD 346
              N        N+  A   + +F+ A +  E                     L  +Y  
Sbjct: 244 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 303

Query: 347 RDNLDKAVECYQMALSI 363
                 A      AL +
Sbjct: 304 AGRKSDAQRVLLDALKL 320

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 75.3 bits (183), Expect = 3e-15
 Identities = 35/314 (11%), Positives = 71/314 (22%), Gaps = 34/314 (10%)

Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-----ALERPMYAEAYCNMGVIYK 236
           + ++ D  +A        V       D A    + A              A   +G +  
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62

Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296
            +G+L  ++A  ++   ++       +    +L      +  +G +       +KA    
Sbjct: 63  CKGELTRSLALMQQTEQMARQH-DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 121

Query: 297 WHY--------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP------------HCAEA 336
                         +           + D A                           + 
Sbjct: 122 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181

Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
               G +   R  L++               S +     + + + G   AAA  +     
Sbjct: 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 241

Query: 397 A----NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN----RLLAMNY 448
                N      + N+       G    A    E+  +     R          LL   Y
Sbjct: 242 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 301

Query: 449 INEGHDDKLFEAHR 462
              G          
Sbjct: 302 WQAGRKSDAQRVLL 315

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 72.3 bits (175), Expect = 4e-14
 Identities = 34/292 (11%), Positives = 80/292 (27%), Gaps = 30/292 (10%)

Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
           K   E  M+AE       +  N G+ + A    +  L   P       +  +A + LG  
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEV 60

Query: 276 VKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329
           +  +G++ + +A  ++            +   ++               A    E AF  
Sbjct: 61  LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 120

Query: 330 NPHC--------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ------------ 369
                                +      LD+A    +  + +  ++              
Sbjct: 121 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180

Query: 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429
                G +   + +++    ++      +   + A     + ++  G  + A +      
Sbjct: 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240

Query: 430 KIDPDSR--NAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
           K +  +     GQ R +A   I  G  +       +  +    L        
Sbjct: 241 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 46.8 bits (109), Expect = 5e-06
 Identities = 12/139 (8%), Positives = 37/139 (26%), Gaps = 5/139 (3%)

Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-----YAEAYNNLGVLYRD 414
            +      ++       V    G  D A  + + A+   P         A + LG +   
Sbjct: 4   DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC 63

Query: 415 AGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQ 474
            G ++ ++   +Q  ++              +            +   +  ++  +L ++
Sbjct: 64  KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 123

Query: 475 YTSWDNTKDPERPLVIGYV 493
                         +   +
Sbjct: 124 QHLEQLPMHEFLVRIRAQL 142

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (198), Expect = 5e-18
 Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 40/209 (19%)

Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
           AI L + G       + +  +  +     +   ++   +N+G +Y+ L     A   + +
Sbjct: 5   AISLWNEGVLAADKKDWKGALDAF---SAVQDPHSRICFNIGCMYTILKNMTEAEKAFTR 61

Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
           +       A AY   G++Y      + AI   +  L                        
Sbjct: 62  SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG------------------- 102

Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
                 NQ + Y    L +     + +YN+   Y +  ++  A     LA          
Sbjct: 103 ------NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE---- 152

Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKP 365
                        +DKA+EC       +P
Sbjct: 153 --------PRHSKIDKAMECVWKQKLYEP 173

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 1e-14
 Identities = 23/180 (12%), Positives = 56/180 (31%), Gaps = 21/180 (11%)

Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
           AI+L + G     + D    +  +         ++   +N+G  Y  +     A   +  
Sbjct: 5   AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTR 61

Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
           + + + H A A    G++Y   +  D A++  + AL                       +
Sbjct: 62  SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG------------------N 103

Query: 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
              +     +       E   N+  +Y        A +       +  + R++  ++ + 
Sbjct: 104 QLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 163

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 1e-09
 Identities = 27/211 (12%), Positives = 55/211 (26%), Gaps = 41/211 (19%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
             +   +  +  AL  +  V +  S         G    +      A  +F+ ++  D  
Sbjct: 12  GVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRDKH 68

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
            A A+   G+LY    +   A +   +AL                               
Sbjct: 69  LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN------------------------- 103

Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
             I      L+         YN+  +Y++  ++  A      A   +             
Sbjct: 104 QLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS------------ 151

Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
                 ++ A+ C  +     P   I    +
Sbjct: 152 EPRHSKIDKAMECVWKQKLYEP-VVIPVGRL 181

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.0 bits (196), Expect = 4e-17
 Identities = 26/235 (11%), Positives = 63/235 (26%), Gaps = 26/235 (11%)

Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI------AKNNMAIALTDLGTKVKL 278
           A+       IY+ R +L  A   + +                            G  V  
Sbjct: 37  ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96

Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF------HFNPH 332
              +   +  +     +            +   ++  +  AI  YELA            
Sbjct: 97  VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156

Query: 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMD 385
             +       +        +A + Y   +         + +        G+         
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV 216

Query: 386 AAAEMIEKAIAANPTYAEA-----YNNLGVLYR--DAGSISLAIDAYEQCLKIDP 433
           AAA  +++  + +P +A++       +L       D+  +S     ++  +++D 
Sbjct: 217 AAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (128), Expect = 2e-08
 Identities = 27/224 (12%), Positives = 57/224 (25%), Gaps = 19/224 (8%)

Query: 89  GICLQMQNMGRLAFDSFSEAVKLDPQNAC------AHTHCGILYKDEGRLVEAAESYHKA 142
               +++    LA DSF +A     +          +      +K  G  V A +S   A
Sbjct: 44  ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103

Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYN 196
           +                            +    I  Y  A +              +  
Sbjct: 104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK 163

Query: 197 LGVVYSELMQYDTALGCYEKAA-------LERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
              + +   QY  A   Y K         L +    + +   G+      D  +A    +
Sbjct: 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223

Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
              +  PNF  ++ +  +              +++    +   +
Sbjct: 224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.5 bits (122), Expect = 1e-07
 Identities = 19/161 (11%), Positives = 42/161 (26%), Gaps = 17/161 (10%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAA 387
           A+ C     IY+ R  L+ A + +  A         +     +       +   G    A
Sbjct: 37  ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96

Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL-----------KIDPDSR 436
            + +E AI       +        +     +   +  Y + +           +    + 
Sbjct: 97  VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156

Query: 437 NAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTS 477
           +       A     +G   +  + +    K  M       S
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.8 bits (185), Expect = 3e-16
 Identities = 24/205 (11%), Positives = 62/205 (30%), Gaps = 16/205 (7%)

Query: 151 PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210
           P+A+     L + G  L +     +    Y  A+  +P  A  Y N  + Y ++ Q + A
Sbjct: 2   PSAQ----ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 57

Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270
           L    +A        +A+  +G         + AIA  +R  +++    +   +   +  
Sbjct: 58  LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA- 116

Query: 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
                      +         ++     + ++  +  +      + +  +   +     +
Sbjct: 117 -----------LRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGH 165

Query: 331 PHCAEACNNLGVIYKDRDNLDKAVE 355
                       I    D     ++
Sbjct: 166 EDDGHIRAQQACIEAKHDKYMADMD 190

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.0 bits (183), Expect = 4e-16
 Identities = 29/197 (14%), Positives = 68/197 (34%), Gaps = 9/197 (4%)

Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
           A  L + G ++ +     +  A Y +A+  N   A    N  + Y +M + + A+     
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
           A   +    +A   LG    + ++ D+A+   Q A S+      +  +      +   + 
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD-----IPSALR 118

Query: 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
            A +    +I     + E+  +  +    A      ++  ++  +   D  +    +   
Sbjct: 119 IAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQAC- 177

Query: 446 MNYINEGHDDKLFEAHR 462
              I   HD  + +   
Sbjct: 178 ---IEAKHDKYMADMDE 191

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.6 bits (182), Expect = 8e-16
 Identities = 22/139 (15%), Positives = 46/139 (33%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
           A+     G          +A  CY  A++  P  +    N  + Y    + + A     +
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
           A+  +    +A+  LG    +  S   AI   ++   +  + R    + + +   I +  
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123

Query: 454 DDKLFEAHRDWGKRFMRLY 472
                E  R   +  +  Y
Sbjct: 124 RWNSIEERRIHQESELHSY 142

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.7 bits (177), Expect = 3e-15
 Identities = 25/191 (13%), Positives = 60/191 (31%), Gaps = 12/191 (6%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
            N L    K+ +A A Y   + ++      +  + +C         A      A++LD Q
Sbjct: 11  GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
           +  AH   G    +     EA  +  +A S     +           D+ ++L++A    
Sbjct: 71  SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN------FGDDIPSALRIA---- 120

Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
              +K + +++    +  +  +  +      + +  L   ++                 I
Sbjct: 121 --KKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACI 178

Query: 235 YKNRGDLESAI 245
                   + +
Sbjct: 179 EAKHDKYMADM 189

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.8 bits (172), Expect = 1e-14
 Identities = 26/181 (14%), Positives = 50/181 (27%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
           A  +   G       K+  A   Y  A   NP  A    N  + Y      ++A+   + 
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
           AL +     ++   LG         D A   +++A +        + +            
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123

Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
                 E+ +  + +  +     + A          +  E H D G    +        D
Sbjct: 124 RWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHD 183

Query: 480 N 480
            
Sbjct: 184 K 184

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.7 bits (146), Expect = 4e-11
 Identities = 25/213 (11%), Positives = 62/213 (29%), Gaps = 12/213 (5%)

Query: 79  SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAES 138
           S + +    +G  L +      A   +  A+  +P  A  +T+  + Y    +  +A   
Sbjct: 1   SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60

Query: 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198
             +AL  D     A   L     ++        +  + I     A  +       + +  
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEM-------ESYDEAIANLQRAYSLAKEQRLNFGDDI 113

Query: 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
                + +          +  ER ++ E+  +  +      + E  +   +R      + 
Sbjct: 114 PSALRIAKK-----KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDD 168

Query: 259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
              +   A         +    ++   V   +K
Sbjct: 169 GHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 72.4 bits (177), Expect = 1e-14
 Identities = 21/178 (11%), Positives = 52/178 (29%), Gaps = 8/178 (4%)

Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
           +   A+     A   +P  A   ++   +     + ++A E    ++ + P +    + L
Sbjct: 11  QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70

Query: 375 GVVY-TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
             +    Q + D A       +               L   +       +   Q  ++  
Sbjct: 71  RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130

Query: 434 DSRNAGQNRLLAMNYINEGHDDKL---FEAHRDWGKRFMRLYSQYTSWDNTKDPERPL 488
           +      +   + + + +  DD+L    E     G  F+   +   +    K     L
Sbjct: 131 EKGFLANDT--SFSDVRDI-DDRLGGYIELFSTAGNYFLVPIASINTL-EIKSATSLL 184

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 68.1 bits (166), Expect = 3e-13
 Identities = 27/154 (17%), Positives = 46/154 (29%), Gaps = 13/154 (8%)

Query: 93  QMQNM---GRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
           Q +N    G+L  A +   EA+K  P++A   +    L   +G    A E   +++   P
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID-PHYAPAYYNLGVVYSELMQ 206
            Y P A  L  +       +K A   +D  Q    A  +              +      
Sbjct: 62  EYLPGASQLRHL-------VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD 114

Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
           Y+       +    R        +         D
Sbjct: 115 YEQVSELALQIEELRQEKGFLANDTSFSDVRDID 148

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 68.1 bits (166), Expect = 3e-13
 Identities = 13/132 (9%), Positives = 32/132 (24%), Gaps = 1/132 (0%)

Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
           EG + Q +    +A+  +   A    +          F+ A      +    P      +
Sbjct: 9   EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68

Query: 339 NLGVIYKDRDNLDKAVECY-QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
            L  + K         +      +  +            +  V    +  +E+  +    
Sbjct: 69  QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128

Query: 398 NPTYAEAYNNLG 409
                   N+  
Sbjct: 129 RQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 64.7 bits (157), Expect = 5e-12
 Identities = 14/141 (9%), Positives = 32/141 (22%), Gaps = 6/141 (4%)

Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
            G  Q  ++   EA+K  P  A    +   +      ++ A     ++    P Y     
Sbjct: 9   EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68

Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289
            +  + K     +                 + +N              +  D  Q     
Sbjct: 69  QLRHLVKAAQARKDFAQGAAT------AKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122

Query: 290 KKALYYNWHYADAMYNLGVAY 310
            +             +   + 
Sbjct: 123 LQIEELRQEKGFLANDTSFSD 143

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 63.5 bits (154), Expect = 1e-11
 Identities = 23/182 (12%), Positives = 54/182 (29%), Gaps = 19/182 (10%)

Query: 47  EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
           + K+ALS         +   AL L    ++    +          L +      A +   
Sbjct: 2   QWKNALS-------EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLM 54

Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
           +++KL P+     +    L K      + A+    A     + +     +          
Sbjct: 55  QSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLV------SFNL 108

Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
             ++ + +   +   +  ++         +    +S++   D  LG      +E    A 
Sbjct: 109 SMVSQDYEQVSELALQIEELRQEKGFLANDTS--FSDVRDIDDRLG----GYIELFSTAG 162

Query: 227 AY 228
            Y
Sbjct: 163 NY 164

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 63.1 bits (153), Expect = 1e-11
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 2/84 (2%)

Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
           +G++  A E++ +AI A+P  A   ++   L    G    A +   Q +K+ P+      
Sbjct: 9   EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68

Query: 441 NRLLAMNYINEGHDDKLFEAHRDW 464
              L              +     
Sbjct: 69  Q--LRHLVKAAQARKDFAQGAATA 90

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 62.4 bits (151), Expect = 2e-11
 Identities = 17/182 (9%), Positives = 40/182 (21%), Gaps = 9/182 (4%)

Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296
           + G L+ A+      +  SP     +++    L          GD  +      +++   
Sbjct: 8   SEGQLQQALELLIEAIKASPKDASLRSSFIELLCID-------GDFERADEQLMQSIKLF 60

Query: 297 WHYADAMYNLGVAYGEMLKFDMAIV-FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
             Y      L                                     +     + ++  E
Sbjct: 61  PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120

Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415
                  ++       N+           D     IE    A   +     ++  L   +
Sbjct: 121 LALQIEELRQEKGFLANDTSFSDVRDID-DRLGGYIELFSTAGNYFLVPIASINTLEIKS 179

Query: 416 GS 417
            +
Sbjct: 180 AT 181

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 7e-14
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 2/125 (1%)

Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
           A     +G     + D ++A+  Y++   + P       N A    + G   K      +
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNNLGV 342
            +   ++        A A   +G +Y +  K+  AI FY   LA H  P   + C     
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123

Query: 343 IYKDR 347
           I K++
Sbjct: 124 ILKEQ 128

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 1e-11
 Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
           A     LG     + + D A++ Y  A  + P     + N   VY  +G  +   E+ EK
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 394 AIAANPTYAEAY-------NNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
           AI       E Y         +G  Y        AI  Y + L     
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 4e-11
 Identities = 24/108 (22%), Positives = 37/108 (34%)

Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
           A     LG    +   +DTAL  Y+KA    P       N   +Y  +GD        E+
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
            + V          +A A   +G     E      + +Y K+L  +  
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 9e-11
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 7/114 (6%)

Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
           A+   +LG       +    ++ Y +A ++DP       N   VY E   Y+      EK
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 217 AALERPMYAEAYC-------NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
           A        E Y         +G  Y      + AI  Y + LA     ++ K 
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 2e-10
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 8/116 (6%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
           A     LG    +   FD A+  Y+ A   +P       N   +Y ++ + +K  E  + 
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 360 ALSIKPNFS-------QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
           A+ +            ++   +G  Y  + K   A     K++A + T  +     
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC 118

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 9e-10
 Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 7/108 (6%)

Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
           A+   +LG     + D +  + +Y KA   +      + N    Y E   ++      E 
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 326 AFHFNPHCAE-------ACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
           A        E       A   +G  Y   +    A+  Y  +L+    
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 4e-08
 Identities = 24/109 (22%), Positives = 37/109 (33%)

Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
           + A      G     +     A + Y KA   DP+        A V  + G   K     
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
           +  I+   E  +     A AY  +G  Y +  +Y  A+  Y K+  E  
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 4e-07
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 10/111 (9%)

Query: 48  GKDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
           GK AL      N    +  F  AL  Y+   E D  N+     +      +       + 
Sbjct: 1   GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60

Query: 105 FSEAVKLDPQNACAHTHC-------GILYKDEGRLVEAAESYHKALSADPS 148
             +A+++  +N   +          G  Y  E +  +A   Y+K+L+   +
Sbjct: 61  CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 7e-07
 Identities = 20/102 (19%), Positives = 36/102 (35%)

Query: 88  KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
            G     +     A   + +A +LDP N    T+   +Y ++G   +  E   KA+    
Sbjct: 10  LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69

Query: 148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
             +     +A     +G S       +D I  Y ++L     
Sbjct: 70  ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 7e-06
 Identities = 15/80 (18%), Positives = 30/80 (37%)

Query: 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429
               LG     +   D A +  +KA   +PT      N   +Y + G  +   +  E+ +
Sbjct: 6   KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65

Query: 430 KIDPDSRNAGQNRLLAMNYI 449
           ++  ++R   +    A   I
Sbjct: 66  EVGRENREDYRQIAKAYARI 85

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 65.4 bits (158), Expect = 6e-13
 Identities = 19/182 (10%), Positives = 47/182 (25%), Gaps = 26/182 (14%)

Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
           +E    E+   A      G +Y   G    A+  Y + ++            + A     
Sbjct: 4   WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKAS---- 59

Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
                                       A  NL + Y ++ ++  A+   + A   +   
Sbjct: 60  ----------------------ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 97

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
            +     G      +  + A   ++  L + P    +   + +      + +        
Sbjct: 98  EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYA 157

Query: 394 AI 395
            +
Sbjct: 158 NM 159

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 58.0 bits (139), Expect = 2e-10
 Identities = 26/133 (19%), Positives = 43/133 (32%), Gaps = 15/133 (11%)

Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHF---------------NPHCAEACNNLGVI 343
            A  +   G  Y +  K+  A++ Y     +                     A  NL + 
Sbjct: 14  QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73

Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
           Y       KAVEC   AL +     + L   G    +  + ++A    EK +  NP    
Sbjct: 74  YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133

Query: 404 AYNNLGVLYRDAG 416
           A   + +  + A 
Sbjct: 134 ARLQIFMCQKKAK 146

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 56.9 bits (136), Expect = 4e-10
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 15/132 (11%)

Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI---------------DPHYAPAYYNLGVVY 201
           A ++ + GT     G     + +Y + +                 +     A+ NL + Y
Sbjct: 15  AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 74

Query: 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
            +L +Y  A+ C +KA        +     G       + ESA   +E+ L V+P  + A
Sbjct: 75  LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 134

Query: 262 KNNMAIALTDLG 273
           +  + +      
Sbjct: 135 RLQIFMCQKKAK 146

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 54.6 bits (130), Expect = 2e-09
 Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 15/144 (10%)

Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---------------KPNF 367
           +E+        A      G +Y       +AV  Y   +S                +   
Sbjct: 4   WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFL 63

Query: 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
             +  NL + Y    +   A E  +KA+  +    +     G           A   +E+
Sbjct: 64  LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEK 123

Query: 428 CLKIDPDSRNAGQNRLLAMNYINE 451
            L+++P ++ A     +      E
Sbjct: 124 VLEVNPQNKAARLQIFMCQKKAKE 147

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 45.3 bits (106), Expect = 4e-06
 Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 8/136 (5%)

Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKA--------ALERPMYAEAYCNMGVIYKNRGDL 241
            A      G VY +  +Y  A+  Y K          L       +   +   + N    
Sbjct: 14  QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73

Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301
              +  Y + +          +     L   G    L  +       ++K L  N     
Sbjct: 74  YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133

Query: 302 AMYNLGVAYGEMLKFD 317
           A   + +   +  + +
Sbjct: 134 ARLQIFMCQKKAKEHN 149

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 44.6 bits (104), Expect = 8e-06
 Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 8/139 (5%)

Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALS--------ADPSYKPAAECLAIVLTDLGT 165
           + A      G +Y   G+ V+A   Y K +S        ++   K +   L     +L  
Sbjct: 13  EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 72

Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
                      ++   +AL +D       Y  G     + ++++A G +EK     P   
Sbjct: 73  CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 132

Query: 226 EAYCNMGVIYKNRGDLESA 244
            A   + +  K   +    
Sbjct: 133 AARLQIFMCQKKAKEHNER 151

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 15/125 (12%)

Query: 55  ANILRSRNKFVDALALYEIV---------------LEKDSGNVEAHIGKGICLQMQNMGR 99
             +     K+V A+  Y  +                  +S  + A +   +C        
Sbjct: 22  GTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 81

Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
            A +   +A+ LD  N       G           A   + K L  +P  K A   + + 
Sbjct: 82  KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC 141

Query: 160 LTDLG 164
                
Sbjct: 142 QKKAK 146

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (151), Expect = 2e-12
 Identities = 12/118 (10%), Positives = 28/118 (23%), Gaps = 5/118 (4%)

Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE----- 392
             +       ++L K  + +Q   +       +              D   + I      
Sbjct: 3   EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL 62

Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450
               +     +    L V          A+      L+ +P +  A +   L    + 
Sbjct: 63  LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 3e-11
 Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 6/113 (5%)

Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA-- 292
             +  DL      ++   A     +  +   A  L           DI +G+   ++   
Sbjct: 9   LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY----NDDIRKGIVLLEELLP 64

Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
                   D ++ L V    + +++ A+ +        P   +A     +I K
Sbjct: 65  KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (137), Expect = 2e-10
 Identities = 13/118 (11%), Positives = 31/118 (26%), Gaps = 5/118 (4%)

Query: 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM---AIVFYELAF 327
            +  ++    D+ +    ++             +            D     IV  E   
Sbjct: 4   AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63

Query: 328 --HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383
                    +    L V        +KA++  +  L  +P  +Q+     ++     K
Sbjct: 64  PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 1e-09
 Identities = 19/113 (16%), Positives = 31/113 (27%), Gaps = 6/113 (5%)

Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
                 L++  + +    +A    K      A  L           + + GI    E L 
Sbjct: 9   LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY----NDDIRKGIVLLEELLP 64

Query: 186 I--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236
                      + L V    L +Y+ AL          P   +A     +I K
Sbjct: 65  KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 9e-09
 Identities = 10/111 (9%), Positives = 23/111 (20%), Gaps = 5/111 (4%)

Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ---YDTALGCYEKAA 218
            +   L    +     +K+              +                  +   E+  
Sbjct: 4   AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63

Query: 219 --LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
               +    +    + V      + E A+      L   P    AK    +
Sbjct: 64  PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 6e-05
 Identities = 6/107 (5%), Positives = 21/107 (19%), Gaps = 8/107 (7%)

Query: 101 AFDSFSEAVKLDPQNACAHTHCGILY---KDEGRLVEAAESYHKALSADPSYKPAAECLA 157
               F         +              +    + +      + L      +       
Sbjct: 18  FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRD---- 73

Query: 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204
             +  L          +  ++     L+ +P    A     ++   +
Sbjct: 74  -YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 9/113 (7%), Positives = 19/113 (16%), Gaps = 8/113 (7%)

Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES---AIACYERCLAVSPNFEIAK 262
                   ++       +                  +     I   E  L          
Sbjct: 14  DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK----- 68

Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
                 +  L        +  + + Y +  L        A     +    M K
Sbjct: 69  EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 1e-10
 Identities = 27/179 (15%), Positives = 54/179 (30%), Gaps = 30/179 (16%)

Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
           E+   +      G +Y   G  + A+  Y++ ++         N  A             
Sbjct: 8   EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA---------- 57

Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
                                 +  NL + + ++  F  AI     A   + +  +  + 
Sbjct: 58  ----------------QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR 101

Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
            G  +   ++ + A   +Q  L + PN   +   L V      +  A     EK + AN
Sbjct: 102 RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR----EKKLYAN 156

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 9e-07
 Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 15/138 (10%)

Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEA---------------LKIDPHYAPAYYNLGVVY 201
           + ++ + GT     G  +  + +Y +                 K       ++ NL + +
Sbjct: 13  STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72

Query: 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
            +L  +  A+    KA        +     G  +    D E A A +++ L + PN + A
Sbjct: 73  LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132

Query: 262 KNNMAIALTDLGTKVKLE 279
           K  +A+    +  ++  E
Sbjct: 133 KTQLAVCQQRIRRQLARE 150

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 15/133 (11%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMA---------------LSIKPNFSQSLNNLGVVY 378
           +      G +Y       +A+  Y+                    +     S  NL + +
Sbjct: 13  STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72

Query: 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
                  AA E   KA+  +    +  +  G  +       LA   +++ L++ P+++ A
Sbjct: 73  LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132

Query: 439 GQNRLLAMNYINE 451
                +    I  
Sbjct: 133 KTQLAVCQQRIRR 145

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 4e-10
 Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 9/144 (6%)

Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
           AE        Y    D E+AI  Y + + ++P+  I   N ++A                
Sbjct: 10  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-------TECYGY 62

Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
            +    +A+  +  Y    Y    +   + KF  A+  YE      PH  +A        
Sbjct: 63  ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122

Query: 345 K--DRDNLDKAVECYQMALSIKPN 366
           K   +   ++A+   +   S+  +
Sbjct: 123 KIVKQKAFERAIAGDEHKRSVVDS 146

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 1e-08
 Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 5/145 (3%)

Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
           A  L           D    + +Y +A+  N   A    N  +AY     +  A+     
Sbjct: 10  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69

Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
           A   +    +                 A+  Y+  + +KP+   +         +  +  
Sbjct: 70  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ-- 127

Query: 386 AAAEMIEKAIAANPTYAEAYNNLGV 410
              +  E+AIA +       ++L +
Sbjct: 128 ---KAFERAIAGDEHKRSVVDSLDI 149

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 2/142 (1%)

Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
            K +      A+ Y  A+             AI   +   +          +     A++
Sbjct: 13  LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 72

Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK--NRGDLES 243
           +D  Y   YY        L ++  AL  YE     +P   +A        K   +   E 
Sbjct: 73  LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 132

Query: 244 AIACYERCLAVSPNFEIAKNNM 265
           AIA  E   +V  + +I    +
Sbjct: 133 AIAGDEHKRSVVDSLDIESMTI 154

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 1e-07
 Identities = 21/123 (17%), Positives = 42/123 (34%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
           AE        Y    + + A++ Y  A+ + P+ +    N  + Y        A     +
Sbjct: 10  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69

Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
           AI  +  Y + Y          G    A+  YE  +K+ P  ++A          + +  
Sbjct: 70  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129

Query: 454 DDK 456
            ++
Sbjct: 130 FER 132

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 24/136 (17%), Positives = 39/136 (28%), Gaps = 9/136 (6%)

Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
           A         Y +   Y+ A+  Y +A    P  A  Y N  + Y        A+    R
Sbjct: 10  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69

Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA- 309
            + +   +       A +   L       G     +  Y+  +    H  DA        
Sbjct: 70  AIELDKKYIKGYYRRAASNMAL-------GKFRAALRDYETVVKVKPHDKDAKMKYQECN 122

Query: 310 -YGEMLKFDMAIVFYE 324
              +   F+ AI   E
Sbjct: 123 KIVKQKAFERAIAGDE 138

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 19/150 (12%)

Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG-------CYEKAA 218
            LK   N     + Y  A+K          +  + Y                     +A 
Sbjct: 12  ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 71

Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
                Y + Y          G   +A+  YE  + V P+ + AK         +  K   
Sbjct: 72  ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQK--- 128

Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGV 308
                     +++A+  + H    + +L +
Sbjct: 129 ---------AFERAIAGDEHKRSVVDSLDI 149

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.0 bits (136), Expect = 4e-10
 Identities = 27/180 (15%), Positives = 48/180 (26%), Gaps = 29/180 (16%)

Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
           K   +  + +E   N+G  +    + E AI  Y + L                       
Sbjct: 18  KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG------------------ 59

Query: 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
                  ++  A               + N+G    +M  +  A+     A   +P   +
Sbjct: 60  -------SRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 112

Query: 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395
           A       ++     D+A+   + A  I P        L  V              EKA 
Sbjct: 113 ALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK----EKAA 168

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 2e-09
 Identities = 18/153 (11%), Positives = 50/153 (32%), Gaps = 16/153 (10%)

Query: 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA------------- 183
             + +    D         ++  L ++G +   + N +  I+KY +              
Sbjct: 7   PDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAED 66

Query: 184 ---LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
               K+ P       N+G    ++  +  A+    +A    P   +A       ++   +
Sbjct: 67  ADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE 126

Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
            + A+A  ++   ++P  +  +  +      + 
Sbjct: 127 YDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 3e-08
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 16/130 (12%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHF----------------NPHCAEACNNLGVI 343
           ++ + N+G  + +   ++MAI  Y     +                 P       N+G  
Sbjct: 27  SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 86

Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
                +   AV+    AL I P+ +++L      +    + D A   ++KA    P    
Sbjct: 87  KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146

Query: 404 AYNNLGVLYR 413
               L  + +
Sbjct: 147 IQAELLKVKQ 156

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 21/116 (18%), Positives = 37/116 (31%)

Query: 49  KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108
           + A+     +    +   A A      +     +   +  G C    +  + A DS  EA
Sbjct: 44  EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 103

Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
           +++DP N  A       ++      +A     KA    P  K     L  V   + 
Sbjct: 104 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 56.2 bits (134), Expect = 6e-10
 Identities = 26/165 (15%), Positives = 47/165 (28%), Gaps = 25/165 (15%)

Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
           Y+    E+   A      G  +  + ++  AI  Y+  L    + E   + + +      
Sbjct: 6   YDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD----- 60

Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
                                          NL   Y +   +  AI         + + 
Sbjct: 61  --------------------KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 100

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 378
            +A   LGV       L++A E    A S+ PN     N+  +  
Sbjct: 101 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 53.1 bits (126), Expect = 7e-09
 Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 16/133 (12%)

Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----------------YAPAYYNLGVV 200
           A  + + G          + I KY EAL    H                      NL   
Sbjct: 17  AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76

Query: 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260
           Y++   Y  A+    K         +A   +GV     G LE A     +  +++PN   
Sbjct: 77  YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136

Query: 261 AKNNMAIALTDLG 273
            +N+  + +  L 
Sbjct: 137 IRNSYELCVNKLK 149

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 48.1 bits (113), Expect = 4e-07
 Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 16/134 (11%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQM----------------ALSIKPNFSQSLNNLGVV 377
           A      G  +  ++ +++A+  Y+                     K        NL   
Sbjct: 17  AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76

Query: 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437
           Y        A +   K +  +    +A   LGV     G +  A +   +   ++P++ +
Sbjct: 77  YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136

Query: 438 AGQNRLLAMNYINE 451
              +  L +N + E
Sbjct: 137 IRNSYELCVNKLKE 150

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 16/130 (12%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----------------AEACNNLGVI 343
           A  +   G  + +  + + AIV Y+ A  F  H                      NL   
Sbjct: 17  AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76

Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
           Y    +  KA++     L I  N  ++L  LGV     G ++ A E + KA + NP   +
Sbjct: 77  YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136

Query: 404 AYNNLGVLYR 413
             N+  +   
Sbjct: 137 IRNSYELCVN 146

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 18/139 (12%), Positives = 40/139 (28%), Gaps = 23/139 (16%)

Query: 191 APAYYNLGVVYSELMQYDTALGCYEK----------------AALERPMYAEAYCNMGVI 234
           A      G  + +  + + A+  Y++                   ++ +      N+   
Sbjct: 17  AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76

Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
           Y    D   AI    + L +  N   A   + +A    G        + +      KA  
Sbjct: 77  YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFG-------FLEEAKENLYKAAS 129

Query: 295 YNWHYADAMYNLGVAYGEM 313
            N +  D   +  +   ++
Sbjct: 130 LNPNNLDIRNSYELCVNKL 148

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 16/126 (12%)

Query: 55  ANILRSRNKFVDALALYE----------------IVLEKDSGNVEAHIGKGICLQMQNMG 98
            N    +N+  +A+  Y+                ++ +K +  +  ++    C       
Sbjct: 24  GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY 83

Query: 99  RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
             A D  S+ +K+D  N  A    G+     G L EA E+ +KA S +P+         +
Sbjct: 84  PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 143

Query: 159 VLTDLG 164
            +  L 
Sbjct: 144 CVNKLK 149

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 6e-10
 Identities = 21/93 (22%), Positives = 34/93 (36%)

Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
           + AE    +G +     D        E+ L      EI+  +    L  L   V  +GD+
Sbjct: 3   LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62

Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
           ++ +   KK L  +  +  A  NL      M K
Sbjct: 63  DKALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 7e-10
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 7/87 (8%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDA 386
           AE    LG +     +        + AL           +    L+ L      QG +D 
Sbjct: 5   AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64

Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYR 413
           A  + +K +  +P +  A  NL     
Sbjct: 65  ALLLTKKLLELDPEHQRANGNLKYFEY 91

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 7/91 (7%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYE-------LAFHFNPHCAEACNNLGVIYKDRDNLDK 352
           A+  + LG        +    ++ E                    + L      + +LDK
Sbjct: 5   AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64

Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383
           A+   +  L + P   ++  NL     +  K
Sbjct: 65  ALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 3e-07
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 7/90 (7%)

Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAA-------LERPMYAEAYCNMGVIYKNRGDLES 243
           A   + LG V      Y       E+A        +           +      +GDL+ 
Sbjct: 5   AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64

Query: 244 AIACYERCLAVSPNFEIAKNNMAIALTDLG 273
           A+   ++ L + P  + A  N+      + 
Sbjct: 65  ALLLTKKLLELDPEHQRANGNLKYFEYIMA 94

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 14/82 (17%), Positives = 27/82 (32%)

Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
           G +   E           +AL      + +      VL  L  ++   G+    +    +
Sbjct: 12  GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71

Query: 183 ALKIDPHYAPAYYNLGVVYSEL 204
            L++DP +  A  NL      +
Sbjct: 72  LLELDPEHQRANGNLKYFEYIM 93

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 5/94 (5%)

Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202
           L+A+ S++     L  V              +  +++  E              L     
Sbjct: 3   LTAEDSFE-----LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY 57

Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236
           +    D AL   +K     P +  A  N+     
Sbjct: 58  QQGDLDKALLLTKKLLELDPEHQRANGNLKYFEY 91

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 1e-09
 Identities = 17/113 (15%), Positives = 37/113 (32%)

Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
            + +   G     +   D A+  Y  A   +PH     +N    Y  + +  KA E    
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62

Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
            + +KP++ +  +          + + A    E+ +       +    L  + 
Sbjct: 63  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 8e-09
 Identities = 19/108 (17%), Positives = 36/108 (33%)

Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327
            L + G K    G+I+  +  Y +A+  + H      N   AY +   +  A        
Sbjct: 5   ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 64

Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
              P   +  +      +  +  ++A   Y+  L  + N  Q    L 
Sbjct: 65  DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 21/108 (19%), Positives = 38/108 (35%)

Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
                  G       N+D A++CY  A+ + P+     +N    Y  +G    A E   K
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62

Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
            +   P + + Y+              A   YE+ LK + ++    + 
Sbjct: 63  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 110

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 7e-07
 Identities = 28/107 (26%), Positives = 39/107 (36%)

Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
           L + G      GN  D +Q Y EA+K+DPH    Y N    Y++   Y  A     K   
Sbjct: 6   LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 65

Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
            +P + + Y       +     E A   YE  L    N    K  + 
Sbjct: 66  LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 1e-06
 Identities = 16/121 (13%), Positives = 37/121 (30%), Gaps = 7/121 (5%)

Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
                  G    + G+++ A+ CY   + + P+  +  +N +            +GD  +
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSA-------AYAKKGDYQK 55

Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
                 K +     +         A   + +F+ A   YE       +  +    L  + 
Sbjct: 56  AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115

Query: 345 K 345
            
Sbjct: 116 A 116

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 19/105 (18%), Positives = 36/105 (34%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
            N   S     DAL  Y   ++ D  N   +  +      +   + A++   + V L P 
Sbjct: 10  GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 69

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
               ++      +   R  EA  +Y + L  + +     E L  +
Sbjct: 70  WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 9e-05
 Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 7/117 (5%)

Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
                  G     +   D AL CY +A    P     Y N    Y  +GD + A     +
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62

Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307
            + + P++    +  A AL  L           +    Y++ L +  +       L 
Sbjct: 63  TVDLKPDWGKGYSRKAAALEFL-------NRFEEAKRTYEEGLKHEANNPQLKEGLQ 112

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 51.8 bits (122), Expect = 9e-08
 Identities = 30/226 (13%), Positives = 65/226 (28%), Gaps = 7/226 (3%)

Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
               LG    +   +  A   +EKA   +        N+GV+Y     +E  +       
Sbjct: 4   ELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFY 61

Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
           A + +   +     +      +   +  + N+ + YY KA    +    A        G+
Sbjct: 62  AKACDLNYSNGCHLLGNLY-YSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGK 120

Query: 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 372
           ++  D            + +  + C  LG +Y       K ++    +     +   S  
Sbjct: 121 VVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPG 180

Query: 373 N----LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
                    +      +    +   + A          NLG +  +
Sbjct: 181 CFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 226

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 28/242 (11%), Positives = 51/242 (21%), Gaps = 10/242 (4%)

Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
           G     E    +A + + KA   D         L ++        K          K  +
Sbjct: 9   GAKSYKEKDFTQAKKYFEKA--CDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66

Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
               +  +                 + AL  Y KA   +     A              +
Sbjct: 67  LNYSNGCHLLGNLYYSGQGVS-QNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRD 125

Query: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 302
              A      A   N       +           K                     +   
Sbjct: 126 FKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAG 185

Query: 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD----NLDKAVECYQ 358
                  +GE    +        +          C NLG +  + +    N  +A+E ++
Sbjct: 186 NMY---HHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFK 242

Query: 359 MA 360
             
Sbjct: 243 KG 244

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 47.9 bits (113), Expect = 7e-07
 Identities = 21/157 (13%), Positives = 36/157 (22%), Gaps = 26/157 (16%)

Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
           A    G+     GR  +A+     AL                         +  + +D  
Sbjct: 13  AEKTAGVHAAAAGRFEQASRHLSAALREWRGP-------------------VLDDLRDFQ 53

Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
                A  +      A+           +    +   E    E P     +  +   Y  
Sbjct: 54  FVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYL 113

Query: 238 RGDLESAIACYERC-------LAVSPNFEIAKNNMAI 267
                 A+  Y R        L + P   +   N  I
Sbjct: 114 SDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERI 150

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 12/127 (9%), Positives = 18/127 (14%), Gaps = 12/127 (9%)

Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327
           A    G      G   Q   +   AL                                A 
Sbjct: 13  AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFV------------EPFAT 60

Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
                   A                 +   +      P        L   Y +  +   A
Sbjct: 61  ALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDA 120

Query: 388 AEMIEKA 394
                + 
Sbjct: 121 LGAYRRV 127

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.7 bits (89), Expect = 8e-04
 Identities = 20/134 (14%), Positives = 29/134 (21%), Gaps = 12/134 (8%)

Query: 55  ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
                +  +F  A       L +  G V   +     ++              A  L   
Sbjct: 18  GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEP------------FATALVED 65

Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
              AHT         GR               P  +P    L              G  +
Sbjct: 66  KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYR 125

Query: 175 DGIQKYYEALKIDP 188
                  + L IDP
Sbjct: 126 RVKTTLADDLGIDP 139

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 17/141 (12%), Positives = 42/141 (29%), Gaps = 18/141 (12%)

Query: 224 YAEAYCNMGVIYK--NRGDLESAIACYERCLAVSPNFEI------------AKNNMAIAL 269
              AY  +    +    G+ + A A   R + +S                     +A AL
Sbjct: 6   VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 65

Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYN----WHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
             L +  +     ++ + Y+ +    N      +  A+Y+  +A   + +   A+  ++ 
Sbjct: 66  AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 125

Query: 326 AFHFNPHCAEACNNLGVIYKD 346
                            + + 
Sbjct: 126 VVEMIEERKGETPGKERMMEV 146

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 45.1 bits (105), Expect = 4e-06
 Identities = 15/143 (10%), Positives = 35/143 (24%), Gaps = 25/143 (17%)

Query: 334 AEACNNLGVIYK--DRDNLDKAVECYQMALSIKPNFSQ------------SLNNLGVVYT 379
             A   L    +       D+A    + A+ I                      L     
Sbjct: 7   VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 66

Query: 380 VQGKMDAAAEMIEKAIAANPTYAEA-----------YNNLGVLYRDAGSISLAIDAYEQC 428
                D A    +KA+       E              +  +     G  + A+  +++ 
Sbjct: 67  GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 126

Query: 429 LKIDPDSRNAGQNRLLAMNYINE 451
           +++  + +     +   M    +
Sbjct: 127 VEMIEERKGETPGKERMMEVAID 149

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 14/142 (9%), Positives = 29/142 (20%), Gaps = 18/142 (12%)

Query: 190 YAPAYYNLGVVYSELMQ--YDTALGCYEKA------------ALERPMYAEAYCNMGVIY 235
              AY  L     +L+   YD A     +A                   A  +  +    
Sbjct: 6   VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 65

Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD----LGTKVKLEGDINQGVAYYKK 291
                 + A+   ++ L           +               +   G   + +  +KK
Sbjct: 66  AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 125

Query: 292 ALYYNWHYADAMYNLGVAYGEM 313
            +                    
Sbjct: 126 VVEMIEERKGETPGKERMMEVA 147

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 20/278 (7%), Positives = 63/278 (22%), Gaps = 33/278 (11%)

Query: 164 GTSLKLAGNTQDGIQKYYE-ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
               +        +   YE  L +  H+   +Y       +  +     G    A     
Sbjct: 22  PLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA----- 76

Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
                          +   + A   YER ++             +         +     
Sbjct: 77  ---------------KLFSDEAANIYERAISTLL------KKNMLLYFAYADYEESRMKY 115

Query: 283 NQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA-CNNL 340
            +  + Y + L                            + ++ A               
Sbjct: 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 175

Query: 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400
            + Y    +   A + +++ L    +  + +       +   + +    + E+ + +   
Sbjct: 176 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235

Query: 401 YAEA----YNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
             E     +        + G ++  +   ++      +
Sbjct: 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 8/82 (9%), Positives = 14/82 (17%), Gaps = 15/82 (18%)

Query: 316 FDMAIVFYELAFHFNP-HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
             + +      +        E    L +          A          + N  Q     
Sbjct: 54  ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113

Query: 375 GVVYTVQGKMDAAAEMIEKAIA 396
                          M+E  I 
Sbjct: 114 --------------SMVEDKIQ 121

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 5/83 (6%)

Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVF 322
           N A  L     K     D   GV               + +Y L +   ++ ++ MA  +
Sbjct: 40  NYAWGLI----KSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY 95

Query: 323 YELAFHFNPHCAEACNNLGVIYK 345
            +  F    +  +      ++  
Sbjct: 96  VDTLFEHERNNKQVGALKSMVED 118

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 6/64 (9%), Positives = 16/64 (25%), Gaps = 1/64 (1%)

Query: 342 VIYKDRDNLDKAVECYQMALSIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400
           +   D ++    V+              + L  L +     G+   A   ++        
Sbjct: 46  IKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105

Query: 401 YAEA 404
             + 
Sbjct: 106 NKQV 109

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 9/89 (10%), Positives = 20/89 (22%), Gaps = 3/89 (3%)

Query: 178 QKYYEALKIDPHYAPAY-YNLGVVYSE-LMQYDTALGCYEKAALERPM-YAEAYCNMGVI 234
           Q+              + Y  G++ S  +      +        E      E    + + 
Sbjct: 23  QQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIG 82

Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKN 263
               G+   A    +       N +    
Sbjct: 83  CYKLGEYSMAKRYVDTLFEHERNNKQVGA 111

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 24/144 (16%)

Query: 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN----------LDKAV 354
           +    +  +L F+      E  +  NP  A+     G +  +             + +A+
Sbjct: 2   DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 61

Query: 355 ECYQMALSIKPNFSQSLNNLGVVY-----------TVQGKMDAAAEMIEKAIAANPTYAE 403
             ++ AL I P   +++  +G  Y             +   D A +  ++A+   P    
Sbjct: 62  TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 121

Query: 404 AYNNLGVLYRDAGSISLAIDAYEQ 427
              +L +  +      L  +AY+Q
Sbjct: 122 YLKSLEMTAKAPQ---LHAEAYKQ 142

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 18/146 (12%), Positives = 31/146 (21%), Gaps = 17/146 (11%)

Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK------------ 277
           +    +      E      E     +P            L +L                 
Sbjct: 2   DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 61

Query: 278 --LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
              E  +       +        Y    +           FD+A  F++ A    P    
Sbjct: 62  TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 121

Query: 336 ACNNLGVIYKDRDNLDKAVECYQMAL 361
              +L +  K         E Y+  L
Sbjct: 122 YLKSLEMTAK---APQLHAEAYKQGL 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	689
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.94
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.93
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.86
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.85
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.82
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.82
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.82
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.8
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.75
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.75
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.55
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.55
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.53
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.51
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.43
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.37
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.36
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.35
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.33
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.33
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.29
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.27
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.27
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.18
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.11
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.1
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.08
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.04
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.04
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.03
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.01
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.97
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.96
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.95
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.88
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.85
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.84
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.76
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.6
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.53
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.52
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.37
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.33
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.31
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.22
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.48
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.21
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.13
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.12
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.95
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	92.62
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	88.76
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	83.27

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-35  Score=287.30  Aligned_cols=382  Identities=27%  Similarity=0.375  Sum_probs=357.0

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             99999999967999999999999997099977889957899999289799999999999709997889999999999839
Q 005594           51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG  130 (689)
Q Consensus        51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  130 (689)
                      ++.+|..++..|+|++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|
T Consensus         2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf             69999999986999999999999998689989999999999998699999999999999859998999999999964200


Q ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             98999999999996399997878899999997679999809959999999999962999989899999999981998999
Q 005594          131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA  210 (689)
Q Consensus       131 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  210 (689)
                      ++++|+..+..+....+.....       ................+...........+.........+......+....+
T Consensus        82 ~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLKPDFIDG-------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA  154 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             0222222222121122222222-------222222222222222222221112222222222222222222110001356


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             99999999839998998999999999859999999999999950999189996599999972045531299899999999
Q 005594          211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK  290 (689)
Q Consensus       211 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  290 (689)
                      ...+.+.+...|.....+..+|..+...+++++|...++++++..|++...+..++       ..+...+++++|+..++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-------~~~~~~~~~~~A~~~~~  227 (388)
T d1w3ba_         155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG-------NVLKEARIFDRAVAAYL  227 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHHTTTCTTHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH-------HHHHCCCCHHHHHHHHH
T ss_conf             78888740258610689986363010247199999999999984946499999971-------55220052999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             99961999999999999999855998999999999986099998999989999998699999999999998109999899
Q 005594          291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS  370 (689)
Q Consensus       291 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  370 (689)
                      ++....+.....+..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++...|.....
T Consensus       228 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  307 (388)
T d1w3ba_         228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS  307 (388)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHH
T ss_conf             85777554799999999999987899999999999998499989999999999997487999999998654048730010


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             9999999998299999999999999929995999999999999839999999999999840999742674299994
Q 005594          371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM  446 (689)
Q Consensus       371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~  446 (689)
                      +..++.++...|++++|+..++++++.+|+++.++..+|.++..+|++++|+.+|+++++++|++..++.++..++
T Consensus       308 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~  383 (388)
T d1w3ba_         308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL  383 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             1579999998789999999999999868898999999999999859999999999999970999899999999999

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-31  Score=258.36  Aligned_cols=359  Identities=26%  Similarity=0.378  Sum_probs=307.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             67516599999999967999999999999997099977889957899999289799999999999709997889999999
Q 005594           45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI  124 (689)
Q Consensus        45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  124 (689)
                      +.+...+..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+..+....|...........
T Consensus        30 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  109 (388)
T d1w3ba_          30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA  109 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99899999999999986999999999999998599989999999999642000222222222121122222222222222


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             99983998999999999996399997878899999997679999809959999999999962999989899999999981
Q 005594          125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL  204 (689)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  204 (689)
                      .....+....+...........+.....       ...........+....+...+.+.+...|.....+..+|..+...
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  182 (388)
T d1w3ba_         110 ALVAAGDMEGAVQAYVSALQYNPDLYCV-------RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ  182 (388)
T ss_dssp             HHHHHSCSSHHHHHHHHHHHHCTTCTHH-------HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCC
T ss_conf             2222222222222211122222222222-------222222221100013567888874025861068998636301024


Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf             99899999999999839998998999999999859999999999999950999189996599999972045531299899
Q 005594          205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ  284 (689)
Q Consensus       205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  284 (689)
                      +++++|...++++++.+|++..++..+|.++...|++++|+..++++....+.....+..++.       ++...+++++
T Consensus       183 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~  255 (388)
T d1w3ba_         183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC-------VYYEQGLIDL  255 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH-------HHHHTTCHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHCCCHHH
T ss_conf             719999999999998494649999997155220052999999999857775547999999999-------9998789999


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf             99999999961999999999999999855998999999999986099998999989999998699999999999998109
Q 005594          285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK  364 (689)
Q Consensus       285 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  364 (689)
                      |+..++++++.+|+++.++..+|.++...|++++|+..++.++...|.....+..++.++...|++++|+..++++++.+
T Consensus       256 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  335 (388)
T d1w3ba_         256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF  335 (388)
T ss_dssp             HHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf             99999999984999899999999999974879999999986540487300101579999998789999999999999868


Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99989999999999982999999999999999299959999999999998399
Q 005594          365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS  417 (689)
Q Consensus       365 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  417 (689)
                      |+++.++..+|.++...|++++|+..|+++++++|+++.++.++|.+|.++||
T Consensus       336 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf             89899999999999985999999999999997099989999999999998589

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.3e-23  Score=191.14  Aligned_cols=102  Identities=19%  Similarity=0.247  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             65999999999679999999999999970999778899578999992897999999999997099978899999999998
Q 005594           49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD  128 (689)
Q Consensus        49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  128 (689)
                      ...+..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.++++++|++...+..+|.++..
T Consensus        20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN   99 (323)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999999859999999999999986899899999999999983775889999985100222222222222222222


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCH
Q ss_conf             3998999999999996399997
Q 005594          129 EGRLVEAAESYHKALSADPSYK  150 (689)
Q Consensus       129 ~g~~~~A~~~~~~al~~~~~~~  150 (689)
                      .|++++|+..+++++...|...
T Consensus       100 ~~~~~~A~~~~~~~~~~~~~~~  121 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYTPAYA  121 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTG
T ss_pred             CCCCCCCCCCHHHHHHHCCCHH
T ss_conf             2211211100026777361067

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.9e-22  Score=185.45  Aligned_cols=255  Identities=19%  Similarity=0.244  Sum_probs=170.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf             99767999980995999999999996299998989999999998199899999999999839998998999999999859
Q 005594          160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG  239 (689)
Q Consensus       160 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  239 (689)
                      .+..|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+.++++.+|++...+..+|.++...|
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999985999999999999998689989999999999998377588999998510022222222222222222222


Q ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             99999999999995099918999659999997204553129989999999999961999999999999999855998999
Q 005594          240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA  319 (689)
Q Consensus       240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  319 (689)
                      ++++|+..+++++...|................                          ...........+...+.+.+|
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~a  155 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA--------------------------GLGPSKRILGSLLSDSLFLEV  155 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------------CTTHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHC--------------------------CCCCCHHHHHHHHHHHHHHHH
T ss_conf             112111000267773610678887664000000--------------------------010000147888876579999


Q ss_pred             HHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             99999998609999--8999989999998699999999999998109999899999999999829999999999999992
Q 005594          320 IVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA  397 (689)
Q Consensus       320 ~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  397 (689)
                      +..+.+++..+|..  +.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++++
T Consensus       156 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  235 (323)
T d1fcha_         156 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL  235 (323)
T ss_dssp             HHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99999999971301222111036888888887755002111222222222111013330122111101378887789988


Q ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             9995999999999999839999999999999840999742674
Q 005594          398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ  440 (689)
Q Consensus       398 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  440 (689)
                      +|+++.++..+|.+|..+|++++|+..|+++++++|++..+..
T Consensus       236 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  278 (323)
T d1fcha_         236 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG  278 (323)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred             HHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             4324999999999999878999999999999970975700112

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.5e-18  Score=155.76  Aligned_cols=208  Identities=13%  Similarity=0.058  Sum_probs=169.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             36751659999999996799999999999999709997788995789999928-97999999999997099978899999
Q 005594           44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN-MGRLAFDSFSEAVKLDPQNACAHTHC  122 (689)
Q Consensus        44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l  122 (689)
                      .+.-.+.+..++..+...+.+++|+..++++++.+|.+..+|..+|.++...+ ++++|+..++++++.+|++..+|..+
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~  118 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  118 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             97799999999999995886699999999999879887699999999999837679999999999998877422689887


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             99999839989999999999963999978788999999976799998099599999999999629999898999999999
Q 005594          123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS  202 (689)
Q Consensus       123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  202 (689)
                      |.++..+|++++|+..+.++++.+|++..+       +..+|.++...+++++|+..++++++++|.+..+|.++|.++.
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a-------~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~  191 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILNQDAKNYHA-------WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS  191 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             588885053788998875554321004688-------9988778888886678999999999879744999988999998


Q ss_pred             HCCC------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf             8199------89999999999983999899899999999985999999999999995099918
Q 005594          203 ELMQ------YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE  259 (689)
Q Consensus       203 ~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  259 (689)
                      ..+.      +++|+..+.++++.+|.+..++..++.++...+ ..++...++.++++.|...
T Consensus       192 ~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~  253 (315)
T d2h6fa1         192 NTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHS  253 (315)
T ss_dssp             HTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCC
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCC
T ss_conf             7456310235477679999999849885699999877988627-1889999999997287757

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.4e-18  Score=157.84  Aligned_cols=159  Identities=13%  Similarity=0.078  Sum_probs=110.6

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             97099977889957899999289799999999999709997889999999999839-98999999999996399997878
Q 005594           75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG-RLVEAAESYHKALSADPSYKPAA  153 (689)
Q Consensus        75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~  153 (689)
                      +..+|+..+++..+|.++...+.+++|+..++++++++|.+..+|..+|.++...| ++++|+..++++++.+|++..+ 
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a-  114 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV-  114 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH-
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-
T ss_conf             2269779999999999999588669999999999987988769999999999983767999999999999887742268-


Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             89999999767999980995999999999996299998989999999998199899999999999839998998999999
Q 005594          154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV  233 (689)
Q Consensus       154 ~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  233 (689)
                            +..+|.++...|++++|+..+.++++.+|.+..+|.++|.++...+++++|+..++++++.+|.+..+|.++|.
T Consensus       115 ------~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~  188 (315)
T d2h6fa1         115 ------WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF  188 (315)
T ss_dssp             ------HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             ------98875888850537889988755543210046889988778888886678999999999879744999988999


Q ss_pred             HHHHCCC
Q ss_conf             9998599
Q 005594          234 IYKNRGD  240 (689)
Q Consensus       234 ~~~~~g~  240 (689)
                      ++...+.
T Consensus       189 ~l~~~~~  195 (315)
T d2h6fa1         189 VISNTTG  195 (315)
T ss_dssp             HHHHTTC
T ss_pred             HHHHCCC
T ss_conf             9987456

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.1e-16  Score=142.95  Aligned_cols=281  Identities=11%  Similarity=-0.031  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             7889957899999289799999999999709997-----88999999999983998999999999996399997878899
Q 005594           82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-----ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL  156 (689)
Q Consensus        82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  156 (689)
                      ++....+|.++...|++++|+..++++++..|.+     ..++..+|.++...|++++|+..+++++...+..... ...
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~   90 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW-HYA   90 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-HHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCH-HHH
T ss_conf             9999999999998889999999999998548689967999999999999998799999999999999998750114-899


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----
Q ss_conf             99999767999980995999999999996299--------99898999999999819989999999999983999-----
Q 005594          157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--------HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-----  223 (689)
Q Consensus       157 a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----  223 (689)
                      ...+..++..+...+++..+...+.+++...+        .....+..+|.++...|+++.+...+.++....+.     
T Consensus        91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  170 (366)
T d1hz4a_          91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  170 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99998887887888889999988999999867503412567888998887899981456666899999888766300246


Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             89989999999998599999999999999509991899965999999720455312998999999999996199999999
Q 005594          224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM  303 (689)
Q Consensus       224 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  303 (689)
                      ....+...+..+...+++.++...+.++..............                                  ...+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~----------------------------------~~~~  216 (366)
T d1hz4a_         171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI----------------------------------SNAN  216 (366)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH----------------------------------HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH----------------------------------HHHH
T ss_conf             899998888888764667888899999999998731157269----------------------------------9999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC------CCCCHHHHHH
Q ss_conf             999999985599899999999998609999----899998999999869999999999999810------9999899999
Q 005594          304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNN  373 (689)
Q Consensus       304 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~  373 (689)
                      ..++.++...+++++|...+++++...+.+    ...+..+|.++...|++++|+..+++++..      .|....++..
T Consensus       217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  296 (366)
T d1hz4a_         217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL  296 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99999998604489899999999976224666777889999999987587999999999999887642667479999999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             999999829999999999999992
Q 005594          374 LGVVYTVQGKMDAAAEMIEKAIAA  397 (689)
Q Consensus       374 la~~~~~~g~~~~A~~~~~~al~~  397 (689)
                      +|.++...|++++|++.+++++++
T Consensus       297 la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         297 LNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             999999878999999999999997

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=2.6e-19  Score=163.48  Aligned_cols=266  Identities=10%  Similarity=-0.077  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             9999999999997099977889957899999289----------799999999999709997889999999999839989
Q 005594           64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM----------GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV  133 (689)
Q Consensus        64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  133 (689)
                      .++|+.+++++++.+|++..+|..++.++...+.          +++|+..++++++.+|++..++..+|.++...++  
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~--  122 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE--  122 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS--
T ss_pred             CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--
T ss_conf             699999999999988785899999999999976500347787789999999999998688867989886489988430--


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHCCCHHHHHH
Q ss_conf             9999999999639999787889999999767999980995999999999996299998989-999999998199899999
Q 005594          134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY-YNLGVVYSELMQYDTALG  212 (689)
Q Consensus       134 ~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~la~~~~~~g~~~~A~~  212 (689)
                                                           +++++|+..+++++..+|.+..++ ...|.++...+.+++|+.
T Consensus       123 -------------------------------------~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~  165 (334)
T d1dcea1         123 -------------------------------------PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA  165 (334)
T ss_dssp             -------------------------------------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             -------------------------------------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             -------------------------------------4289999999999855921211110578999874455289999


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99999983999899899999999985999999999999995099918999659999997204553129989999999999
Q 005594          213 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA  292 (689)
Q Consensus       213 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  292 (689)
                      .++++++.+|.+..++..+|.++..+|++++|...+++++...|....                                
T Consensus       166 ~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------------------------  213 (334)
T d1dcea1         166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE--------------------------------  213 (334)
T ss_dssp             HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHH--------------------------------
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH--------------------------------
T ss_conf             999988718987999999999999826889899988776776899999--------------------------------


Q ss_pred             HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             96199999999999999985599899999999998609999899998999999869999999999999810999989999
Q 005594          293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN  372 (689)
Q Consensus       293 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  372 (689)
                                   ....+...+..+++...+.+++...|.....+..++.++...+++.+|+..+.++++.+|.+..++.
T Consensus       214 -------------~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  280 (334)
T d1dcea1         214 -------------LVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII  280 (334)
T ss_dssp             -------------HHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             -------------HHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             -------------9999988244148899999887718660567887999999986699999999988762913799999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             99999998299999999999999929995999999999999
Q 005594          373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR  413 (689)
Q Consensus       373 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  413 (689)
                      .+|.++...|++++|+++++++++++|.....|..++..+.
T Consensus       281 ~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         281 LLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             99999987899999999999999879663999999999986

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=2.8e-18  Score=155.50  Aligned_cols=226  Identities=9%  Similarity=-0.104  Sum_probs=166.1

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf             8999999999998399989989999999998599--99999999999950999189996599999972045531299899
Q 005594          207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ  284 (689)
Q Consensus       207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  284 (689)
                      +++|+.+++++++.+|.+..++..+|.++...++  +++|+..+++++..+|.....+.      ...+..+...+.+++
T Consensus        89 ~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~------~~~~~~~~~~~~~~~  162 (334)
T d1dcea1          89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWD------YRRFVAAQAAVAPAE  162 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHH------HHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHH------HHHHHHHHHCCCCHH
T ss_conf             99999999999986888679898864899884304289999999999855921211110------578999874455289


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf             99999999961999999999999999855998999999999986099998999989999998699999999999998109
Q 005594          285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK  364 (689)
Q Consensus       285 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  364 (689)
                      |+..+++++..+|.+..++..+|.++..+|++++|+..+++++...|.....+    ..+...+..+++...+.+++...
T Consensus       163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~a~~~~~~~l~~~  238 (334)
T d1dcea1         163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGR  238 (334)
T ss_dssp             HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHH----HHHHHHCSSCSHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCHHHHHHHHHHHHHHC
T ss_conf             99999998871898799999999999982688989998877677689999999----99988244148899999887718


Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             999899999999999829999999999999992999599999999999983999999999999984099974267429
Q 005594          365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR  442 (689)
Q Consensus       365 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~  442 (689)
                      |.....+..++.++...+++.+|+..+.+++..+|.+..++..+|.++..+|++++|+++|+++++++|++...+.++
T Consensus       239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L  316 (334)
T d1dcea1         239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  316 (334)
T ss_dssp             CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             660567887999999986699999999988762913799999999999878999999999999998796639999999

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.8e-15  Score=133.65  Aligned_cols=280  Identities=14%  Similarity=0.012  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------
Q ss_conf             88999999999983998999999999996399997878899999997679999809959999999999962999------
Q 005594          116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------  189 (689)
Q Consensus       116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------  189 (689)
                      ++.....|.++...|++++|+..+++++...|.+....  ...++..+|.++...|++++|+..+++++...+.      
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS--RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             99999999999988899999999999985486899679--9999999999999879999999999999999875011489


Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             989899999999981998999999999998399--------989989999999998599999999999999509991899
Q 005594          190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERP--------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA  261 (689)
Q Consensus       190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  261 (689)
                      ....+..++.++...+++..+...+.+++...+        .....+..+|.++...|+++.+...+.++....+.....
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  169 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ  169 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999888788788888999998899999986750341256788899888789998145666689999988876630024


Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------CH
Q ss_conf             96599999972045531299899999999999619999999999999998559989999999999860999-------98
Q 005594          262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-------CA  334 (689)
Q Consensus       262 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~  334 (689)
                      .                                    ....+...+..+...+++.++...+.++......       ..
T Consensus       170 ~------------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~  213 (366)
T d1hz4a_         170 Q------------------------------------QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS  213 (366)
T ss_dssp             G------------------------------------GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred             H------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             6------------------------------------8999988888887646678888999999999987311572699


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHH
Q ss_conf             999989999998699999999999998109999----899999999999829999999999999992------9995999
Q 005594          335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPTYAEA  404 (689)
Q Consensus       335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~  404 (689)
                      ..+..++.++...|++++|...+++++...+.+    ...+.++|.++...|++++|...+++++..      .|....+
T Consensus       214 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  293 (366)
T d1hz4a_         214 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN  293 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             99999999998604489899999999976224666777889999999987587999999999999887642667479999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf             99999999983999999999999984099
Q 005594          405 YNNLGVLYRDAGSISLAIDAYEQCLKIDP  433 (689)
Q Consensus       405 ~~~la~~~~~~g~~~~A~~~~~~al~~~p  433 (689)
                      +..+|.+|..+|++++|.+.+++++++.+
T Consensus       294 ~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         294 LLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999987899999999999999765

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=3.1e-16  Score=139.53  Aligned_cols=97  Identities=20%  Similarity=0.238  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf             99767999980995999999999996299998989999999998199899999999999839998998999999999859
Q 005594          160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG  239 (689)
Q Consensus       160 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  239 (689)
                      ++.+|.++...|++++|+..|++++.++|+++.++..+|.++..+|++++|+..|+++++.+|+++.++..+|.++..+|
T Consensus        40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  119 (259)
T d1xnfa_          40 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG  119 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999987999999999998543499988999600427888777887523446899987611115888999999876


Q ss_pred             CHHHHHHHHHHHHHCCC
Q ss_conf             99999999999995099
Q 005594          240 DLESAIACYERCLAVSP  256 (689)
Q Consensus       240 ~~~~A~~~~~~al~~~~  256 (689)
                      ++++|+..++++++..|
T Consensus       120 ~~~~A~~~~~~al~~~p  136 (259)
T d1xnfa_         120 RDKLAQDDLLAFYQDDP  136 (259)
T ss_dssp             CHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHCC
T ss_conf             67999999999986530

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.8e-15  Score=133.64  Aligned_cols=68  Identities=24%  Similarity=0.416  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf             88995789999928979999999999970999788999999999983998999999999996399997
Q 005594           83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK  150 (689)
Q Consensus        83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  150 (689)
                      .+++.+|.+|...|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++.+|++.
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  105 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  105 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999879999999999985434999889996004278887778875234468999876111

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.8e-15  Score=133.67  Aligned_cols=229  Identities=11%  Similarity=0.095  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             99999999999709997788995789999928979999999999970999788999999999983998999999999996
Q 005594           65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS  144 (689)
Q Consensus        65 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  144 (689)
                      -+|+++|+++++..|+.+++++.+|.++..++++++|   |++++..+|+........+.+.  ...+..+++.+++..+
T Consensus         3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k   77 (497)
T d1ya0a1           3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAK   77 (497)
T ss_dssp             HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHH---HHHHHHCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCC
T ss_conf             8999999999871999799995199999997629999---9999874930199985799999--9999999999998561


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             39999787889999999767999980995999999999996299998989999999998199899999999999839998
Q 005594          145 ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY  224 (689)
Q Consensus       145 ~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  224 (689)
                      .......... .   ...++......+.+..++..+.+++..+|.+...+.++|..+...+++++|+..+.+++..++  
T Consensus        78 ~~~~~~~~~~-~---~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--  151 (497)
T d1ya0a1          78 NRANPNRSEV-Q---ANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--  151 (497)
T ss_dssp             CSSCTTTTHH-H---HHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--
T ss_pred             CCCCCCHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH--
T ss_conf             6458437999-9---999999999999999999999998789911399999857998758999999999998827889--


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             99899999999985999999999999995099918999659999997204553129989999999999961999999999
Q 005594          225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY  304 (689)
Q Consensus       225 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  304 (689)
                      ..++..+|.++...+++++|+.+|++++++.|++...+..++.++..       .|+..+|+.+|.+++...+..+.++.
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~-------~~~~~~A~~~y~ral~~~~~~~~a~~  224 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-------KGDHLTTIFYYCRSIAVKFPFPAAST  224 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-------TTCHHHHHHHHHHHHSSSBCCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             99999999999980247899999999998789965999999999998-------69999999999999817999789999


Q ss_pred             HHHHHHH
Q ss_conf             9999998
Q 005594          305 NLGVAYG  311 (689)
Q Consensus       305 ~la~~~~  311 (689)
                      +++.++.
T Consensus       225 nL~~~~~  231 (497)
T d1ya0a1         225 NLQKALS  231 (497)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9999998

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.1e-15  Score=131.73  Aligned_cols=228  Identities=12%  Similarity=0.043  Sum_probs=164.0

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             99999999999709997889999999999839989999999999963999978788999999976799998099599999
Q 005594           99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ  178 (689)
Q Consensus        99 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~  178 (689)
                      -+|+++|++++++.|+...++..+|.++...+++++|   |++++..+|+..........++         ...+..+++
T Consensus         3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw---------~~~y~~~ie   70 (497)
T d1ya0a1           3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW---------NHAFKNQIT   70 (497)
T ss_dssp             HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH---------HHHTHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHH---HHHHHHCCHHHHHHHHHHHHHH---------HHHHHHHHH
T ss_conf             8999999999871999799995199999997629999---9999874930199985799999---------999999999


Q ss_pred             HHHHHHHHCC--CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf             9999996299--99-89899999999981998999999999998399989989999999998599999999999999509
Q 005594          179 KYYEALKIDP--HY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS  255 (689)
Q Consensus       179 ~~~~al~~~~--~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  255 (689)
                      .+++..+...  .. ......++.+....+.|+.++..+.++...+|.+...+..+|..+...++.++|...+.+++...
T Consensus        71 ~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  150 (497)
T d1ya0a1          71 TLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI  150 (497)
T ss_dssp             HHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHH
T ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf             99985616458437999999999999999999999999999878991139999985799875899999999999882788


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             99189996599999972045531299899999999999619999999999999998559989999999999860999989
Q 005594          256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE  335 (689)
Q Consensus       256 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  335 (689)
                      +         ..++..+|.++...+++++|+.+|++++...|+++..+..+|.++...|++.+|+.+|.+++...|..+.
T Consensus       151 ~---------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~  221 (497)
T d1ya0a1         151 C---------QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA  221 (497)
T ss_dssp             H---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH
T ss_pred             H---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf             9---------9999999999998024789999999999878996599999999999869999999999999817999789


Q ss_pred             HHHHHHHHHHHC
Q ss_conf             999899999986
Q 005594          336 ACNNLGVIYKDR  347 (689)
Q Consensus       336 ~~~~la~~~~~~  347 (689)
                      ++.+++.++...
T Consensus       222 a~~nL~~~~~~~  233 (497)
T d1ya0a1         222 ASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999875

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=3.3e-11  Score=100.39  Aligned_cols=159  Identities=5%  Similarity=-0.016  Sum_probs=95.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHH
Q ss_conf             99899999999999619999-9999999999985599899999999998609999899998999999-869999999999
Q 005594          280 GDINQGVAYYKKALYYNWHY-ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK-DRDNLDKAVECY  357 (689)
Q Consensus       280 ~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~  357 (689)
                      ++.++|...+++++...|.+ ..+|..++......++++.|...|+++++..|.+...+...+.... ..|+.+.|...|
T Consensus       113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~  192 (308)
T d2onda1         113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  192 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             33899999999999871578699999999999982786889999999998088867999999999987655778999999


Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf             99981099998999999999998299999999999999929995----99999999999983999999999999984099
Q 005594          358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP  433 (689)
Q Consensus       358 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  433 (689)
                      +++++..|.++..+..++..+...|+.+.|...|++++...|.+    ...|..........|+.+.+...++++.++.|
T Consensus       193 e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~  272 (308)
T d2onda1         193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf             99998610038899999999998698689999999999827898689999999999999984999999999999998771


Q ss_pred             CCHHH
Q ss_conf             97426
Q 005594          434 DSRNA  438 (689)
Q Consensus       434 ~~~~a  438 (689)
                      +....
T Consensus       273 ~~~~~  277 (308)
T d2onda1         273 EEYEG  277 (308)
T ss_dssp             TTTSS
T ss_pred             CCCCC
T ss_conf             10220

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=9e-11  Score=96.98  Aligned_cols=119  Identities=10%  Similarity=-0.001  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             89999999999961999999999999999-85599899999999998609999899998999999869999999999999
Q 005594          282 INQGVAYYKKALYYNWHYADAMYNLGVAY-GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA  360 (689)
Q Consensus       282 ~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  360 (689)
                      .+.|...+++++...|.....+...+... ...|+.+.|...+++++...|.+...|...+..+...|+++.|...|+++
T Consensus       150 ~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~a  229 (308)
T d2onda1         150 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             68899999999980888679999999999876557789999999999861003889999999999869868999999999


Q ss_pred             HHCCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf             81099998----99999999999829999999999999992999
Q 005594          361 LSIKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT  400 (689)
Q Consensus       361 l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  400 (689)
                      +...|.++    ..|..........|+.+.+.+.++++.+..|.
T Consensus       230 i~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~  273 (308)
T d2onda1         230 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf             98278986899999999999999849999999999999987711

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=1.4e-12  Score=110.95  Aligned_cols=63  Identities=11%  Similarity=0.065  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             99899999986999999999999981099998-------9999999999982999999999999999299
Q 005594          337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-------QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP  399 (689)
Q Consensus       337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  399 (689)
                      +..+|.++..+|++++|+..|++++...+...       ..+...+.++...+++..|...++++.+.+|
T Consensus       161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~  230 (290)
T d1qqea_         161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP  230 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf             8999999998173999999999999868133245556999999999999984659999999999997597

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=1.4e-12  Score=111.14  Aligned_cols=64  Identities=13%  Similarity=-0.040  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf             9999999985599899999999998609999-------899998999999869999999999999810999
Q 005594          303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN  366 (689)
Q Consensus       303 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  366 (689)
                      +..+|.++...|++++|+..|++++...+..       ...+...+.++...+++..|...++++.+.+|.
T Consensus       161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~  231 (290)
T d1qqea_         161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN  231 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf             89999999981739999999999998681332455569999999999999846599999999999975977

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.2e-11  Score=99.56  Aligned_cols=133  Identities=16%  Similarity=0.281  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             99999999855998999999999986099998999989999998699999999999998109999899999999999829
Q 005594          303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG  382 (689)
Q Consensus       303 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  382 (689)
                      +++.|..+...|++++|+..|.+   ..+.++.+++++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999987799999999986---489889999999999998589146787899999985523466788999998542


Q ss_pred             CHHHHHHHHHHHHHHCCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             9999999999999929995----------------9999999999998399999999999998409997426
Q 005594          383 KMDAAAEMIEKAIAANPTY----------------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA  438 (689)
Q Consensus       383 ~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a  438 (689)
                      ++++|+..|++++...+.+                .++++++|.++..+|++++|.+.+.+++++.|+....
T Consensus        85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~  156 (192)
T d1hh8a_          85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHS  156 (192)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGG
T ss_pred             CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH
T ss_conf             499999999999986726736789986654363058899999999999789999999999998369980407

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.37  E-value=1e-08  Score=80.89  Aligned_cols=112  Identities=22%  Similarity=0.323  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----CCCHHHH
Q ss_conf             8999999999986099998999989999998----6999999999999981099998999999999998----2999999
Q 005594          316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAA  387 (689)
Q Consensus       316 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A  387 (689)
                      ...+...+.+...  +.+...+..+|..+..    ..+...+..+++.+.+  ..++.+..++|.++..    ..++++|
T Consensus       126 ~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A  201 (265)
T d1ouva_         126 FKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEA  201 (265)
T ss_dssp             HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred             HHHHHHHHHHHHC--CCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCC--CCCCCCCCCHHHHCCCCCCCCCCHHHH
T ss_conf             5778887555200--111010445555640688743342200012211323--222233221131212676543103444


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCC
Q ss_conf             999999999299959999999999998----3999999999999984099
Q 005594          388 AEMIEKAIAANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKIDP  433 (689)
Q Consensus       388 ~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p  433 (689)
                      +.+|+++.+.  .++.+.++||.+|..    ..++++|.++|+++.+...
T Consensus       202 ~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         202 LARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHCC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             5467665303--68999999999998399976189999999999998769

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=9.8e-11  Score=96.70  Aligned_cols=97  Identities=15%  Similarity=0.152  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf             59999999996799999999999999709997788995789999928979999999999970999788999999999983
Q 005594           50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE  129 (689)
Q Consensus        50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  129 (689)
                      .++..|..+...|+|++|++.|.++   .+.++.+++.+|.++..+|++++|+..|+++++++|+++.++..+|.++..+
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~   83 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT   83 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHC---CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999877999999999864---8988999999999999858914678789999998552346678899999854


Q ss_pred             CCHHHHHHHHHHHHHCCCCC
Q ss_conf             99899999999999639999
Q 005594          130 GRLVEAAESYHKALSADPSY  149 (689)
Q Consensus       130 g~~~~A~~~~~~al~~~~~~  149 (689)
                      |++++|+..|++++...+.+
T Consensus        84 g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          84 EKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             TCHHHHHHHHHHHHHTTTTC
T ss_pred             CCHHHHHHHHHHHHHHCCCC
T ss_conf             24999999999999867267

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.35  E-value=4.4e-08  Score=76.03  Aligned_cols=96  Identities=22%  Similarity=0.272  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             9999999999985----5998999999999986099998999989999998----6999999999999981099998999
Q 005594          300 ADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSL  371 (689)
Q Consensus       300 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~  371 (689)
                      ...+..+|..+..    ..+...+...++.+.+  ..++.+.+.+|.++..    ..++++|+.+|+++.+.  .++.+.
T Consensus       142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~  217 (265)
T d1ouva_         142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGC  217 (265)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCC--CCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCC--CCHHHH
T ss_conf             010445555640688743342200012211323--2222332211312126765431034445467665303--689999


Q ss_pred             HHHHHHHHH----CCCHHHHHHHHHHHHHHCC
Q ss_conf             999999998----2999999999999999299
Q 005594          372 NNLGVVYTV----QGKMDAAAEMIEKAIAANP  399 (689)
Q Consensus       372 ~~la~~~~~----~g~~~~A~~~~~~al~~~p  399 (689)
                      +++|.+|..    ..++++|.++|+++.....
T Consensus       218 ~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         218 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             99999998399976189999999999998769

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.1e-10  Score=94.08  Aligned_cols=104  Identities=15%  Similarity=0.166  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             65999999999679999999999999970999778899578999992897999999999997099978899999999998
Q 005594           49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD  128 (689)
Q Consensus        49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  128 (689)
                      +.+...|..++..|+|++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++..
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             99999999999958999999986602110001133324567888740542128888999998754466877999999999


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             399899999999999639999787
Q 005594          129 EGRLVEAAESYHKALSADPSYKPA  152 (689)
Q Consensus       129 ~g~~~~A~~~~~~al~~~~~~~~~  152 (689)
                      +|++++|+..+++++...|.+...
T Consensus        91 ~g~~~eA~~~~~~a~~~~p~~~~~  114 (159)
T d1a17a_          91 LGKFRAALRDYETVVKVKPHDKDA  114 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf             499999999899998729997999

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2e-10  Score=94.27  Aligned_cols=106  Identities=19%  Similarity=0.205  Sum_probs=45.5

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             99999855998999999999986099998999989999998699999999999998109999899999999999829999
Q 005594          306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD  385 (689)
Q Consensus       306 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  385 (689)
                      .|..++..|+|++|+..|+++++.+|++...|.++|.++...|++++|+..|+++++++|++..++..+|.++..+|+++
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR   95 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
T ss_conf             99999995899999998660211000113332456788874054212888899999875446687799999999949999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             99999999999299959999999999
Q 005594          386 AAAEMIEKAIAANPTYAEAYNNLGVL  411 (689)
Q Consensus       386 ~A~~~~~~al~~~p~~~~~~~~la~~  411 (689)
                      +|+..+++++.+.|++..++..++.+
T Consensus        96 eA~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          96 AALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             99998999987299979999999999

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.3e-10  Score=93.76  Aligned_cols=104  Identities=16%  Similarity=0.138  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             65999999999679999999999999970999778899578999992897999999999997099978899999999998
Q 005594           49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD  128 (689)
Q Consensus        49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  128 (689)
                      +.+...|..++..|+|++|+..|+++++.+|.++.++..+|.++..+|++++|+..+.++++.+|+++.++..+|.++..
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             99999999999969999999999998861996013430001101100001121001346777402202677889999998


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             399899999999999639999787
Q 005594          129 EGRLVEAAESYHKALSADPSYKPA  152 (689)
Q Consensus       129 ~g~~~~A~~~~~~al~~~~~~~~~  152 (689)
                      +|++++|+..|+++++.+|++...
T Consensus        84 ~~~~~~A~~~~~~a~~~~p~~~~~  107 (117)
T d1elwa_          84 LNRFEEAKRTYEEGLKHEANNPQL  107 (117)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf             127999999999999849898999

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=6.3e-11  Score=98.20  Aligned_cols=106  Identities=18%  Similarity=0.154  Sum_probs=89.8

Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             75165999999999679999999999999970999778899578999992897999999999997099978899999999
Q 005594           46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL  125 (689)
Q Consensus        46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  125 (689)
                      .+++.+...|..++..|+|++|+..|+++++.+|.++.++..+|.+|...|++++|+..|+++++++|+++.++..+|.+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             64999999999999869999999999999985999899998178987410000012478888887188738999999999


Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf             99839989999999999963999978
Q 005594          126 YKDEGRLVEAAESYHKALSADPSYKP  151 (689)
Q Consensus       126 ~~~~g~~~~A~~~~~~al~~~~~~~~  151 (689)
                      +..+|++++|+..|++++++.|....
T Consensus        82 ~~~l~~~~~A~~~~~~al~l~p~~~~  107 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYSLAKEQRL  107 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf             99879999999999999874955679

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=6.2e-11  Score=98.22  Aligned_cols=91  Identities=18%  Similarity=0.170  Sum_probs=28.4

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf             99999869999999999999810999989999999999982999999999999999299959999999999998399999
Q 005594          341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL  420 (689)
Q Consensus       341 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  420 (689)
                      |..++..|++++|+..|+++++++|.++.++.++|.+|...|++++|+..++++++++|++..+++++|.+|..+|++++
T Consensus        11 Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~   90 (201)
T d2c2la1          11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDE   90 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf             99999869999999999999985999899998178987410000012478888887188738999999999998799999


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999840
Q 005594          421 AIDAYEQCLKI  431 (689)
Q Consensus       421 A~~~~~~al~~  431 (689)
                      |+..|++++++
T Consensus        91 A~~~~~~al~l  101 (201)
T d2c2la1          91 AIANLQRAYSL  101 (201)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999874

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.9e-10  Score=92.03  Aligned_cols=105  Identities=20%  Similarity=0.302  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf             99899999986999999999999981099998999999999998299999999999999929995999999999999839
Q 005594          337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG  416 (689)
Q Consensus       337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  416 (689)
                      +...|..+...|++++|+..|+++++.+|.++.++.++|.++..+|++++|+..++++++++|+++.+++++|.++..+|
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf             99999999996999999999999886199601343000110110000112100134677740220267788999999812


Q ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             9999999999998409997426742
Q 005594          417 SISLAIDAYEQCLKIDPDSRNAGQN  441 (689)
Q Consensus       417 ~~~~A~~~~~~al~~~p~~~~a~~~  441 (689)
                      ++++|+..|+++++++|+++.+..+
T Consensus        86 ~~~~A~~~~~~a~~~~p~~~~~~~~  110 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHEANNPQLKEG  110 (117)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             7999999999999849898999999

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.1e-09  Score=84.05  Aligned_cols=72  Identities=19%  Similarity=0.227  Sum_probs=23.7

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             999999869999999999999810999989999999999982999999999999999299959999999999
Q 005594          340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL  411 (689)
Q Consensus       340 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  411 (689)
                      +|.+|..+|++++|+.++++++.++|+++.++..+|.++..+|++++|+..|+++++++|++..+...++.+
T Consensus        68 la~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~  139 (170)
T d1p5qa1          68 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  139 (170)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             999988642110110000000100223103467779999872229999999999997298989999999999

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.11  E-value=1.1e-08  Score=80.87  Aligned_cols=70  Identities=19%  Similarity=0.256  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             9999999998299999999999999929995999999999999839999999999999840999742674
Q 005594          371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ  440 (689)
Q Consensus       371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  440 (689)
                      +.++|.+|..+|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|+++++++|++..+..
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~  136 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL  136 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             9849999877622011000223222013104889998899998827899999999999985989899999

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.1e-08  Score=78.55  Aligned_cols=67  Identities=19%  Similarity=0.251  Sum_probs=25.2

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             9999999982999999999999999299959999999999998399999999999998409997426
Q 005594          372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA  438 (689)
Q Consensus       372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a  438 (689)
                      .++|.+|..+|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+
T Consensus        66 ~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~  132 (170)
T d1p5qa1          66 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA  132 (170)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             9999998864211011000000010022310346777999987222999999999999729898999

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.08  E-value=3.3e-09  Score=84.80  Aligned_cols=67  Identities=13%  Similarity=0.224  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf             9999999999829999999999999992999599999999999983999999999999984099974
Q 005594          370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR  436 (689)
Q Consensus       370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  436 (689)
                      ++.++|.++..+|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++.
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~  145 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK  145 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf             9998999998640210136665544310002236777699999980479999999999998598999

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.04  E-value=2.5e-08  Score=77.93  Aligned_cols=78  Identities=23%  Similarity=0.293  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             998999999869999999999999810999989999999999982999999999999999299959999999999998
Q 005594          337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD  414 (689)
Q Consensus       337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  414 (689)
                      +.++|.++..+|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|++++.++|++..+...++.+...
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             984999987762201100022322201310488999889999882789999999999998598989999999999999

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.04  E-value=2.4e-08  Score=78.12  Aligned_cols=72  Identities=17%  Similarity=0.205  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             999999999982999999999999999299959999999999998399999999999998409997426742
Q 005594          370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN  441 (689)
Q Consensus       370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  441 (689)
                      ++.++|.+|..+|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~  140 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS  140 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             996199999984653011101000100000001246776899999689999999999999829898999999

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.03  E-value=1.3e-08  Score=80.29  Aligned_cols=75  Identities=27%  Similarity=0.327  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             998999999869999999999999810999989999999999982999999999999999299959999999999
Q 005594          337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL  411 (689)
Q Consensus       337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  411 (689)
                      +.++|.++..+|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+
T Consensus        70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~  144 (153)
T d2fbna1          70 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC  144 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             961999999846530111010001000000012467768999996899999999999998298989999999999

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.01  E-value=7.5e-09  Score=82.01  Aligned_cols=82  Identities=18%  Similarity=0.149  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             89999899999986999999999999981099998999999999998299999999999999929995999999999999
Q 005594          334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR  413 (689)
Q Consensus       334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  413 (689)
                      ...+.++|.++..+|++++|+..++++++++|+++.++..+|.++..+|++++|+..|+++++++|++..+...++.+..
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~  156 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ  156 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             99999899999864021013666554431000223677769999998047999999999999859899999999999999


Q ss_pred             HC
Q ss_conf             83
Q 005594          414 DA  415 (689)
Q Consensus       414 ~~  415 (689)
                      ..
T Consensus       157 ~l  158 (169)
T d1ihga1         157 KI  158 (169)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             99

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2e-08  Score=78.75  Aligned_cols=99  Identities=20%  Similarity=0.215  Sum_probs=34.6

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             78999992897999999999997099978899999999998399899999999999639999787889999999767999
Q 005594           88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL  167 (689)
Q Consensus        88 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~  167 (689)
                      +|..++..|+|++|+.+|+++++++|++..++..+|.++..+|++++|+..++++++++|.+...+..++.++..+|..+
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~   89 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY   89 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999985999999999999988496458999868899988186077899999999868012788988999999999999


Q ss_pred             HHCCCHHHHHHHHHHHHHH
Q ss_conf             9809959999999999962
Q 005594          168 KLAGNTQDGIQKYYEALKI  186 (689)
Q Consensus       168 ~~~~~~~~A~~~~~~al~~  186 (689)
                      ...+++++|+..|++++..
T Consensus        90 ~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          90 FKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHHC
T ss_conf             9938899999999999845

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.96  E-value=9.9e-09  Score=81.07  Aligned_cols=96  Identities=19%  Similarity=0.202  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             16599999999967999999999999997099977889957899999289799999999999709997889999999999
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK  127 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  127 (689)
                      ....+..|..++..|++.+|+..|++++..+|+++.++..+|.++...+++++|+..++++++++|++..++..+|.++.
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             89999999999987605899998861011211110012335456410125877410000011111100000378999999


Q ss_pred             HCCCHHHHHHHHHHHH
Q ss_conf             8399899999999999
Q 005594          128 DEGRLVEAAESYHKAL  143 (689)
Q Consensus       128 ~~g~~~~A~~~~~~al  143 (689)
                      ..|++++|++.+++.+
T Consensus        96 ~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          96 NEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHH
T ss_conf             9789999999999981

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.95  E-value=8.6e-09  Score=81.55  Aligned_cols=93  Identities=16%  Similarity=0.155  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf             99899999986999999999999981099998999999999998299999999999999929995999999999999839
Q 005594          337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG  416 (689)
Q Consensus       337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  416 (689)
                      .+.+|..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++++|++..++..+|.+|..+|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             99999999987605899998861011211110012335456410125877410000011111100000378999999978


Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             9999999999998
Q 005594          417 SISLAIDAYEQCL  429 (689)
Q Consensus       417 ~~~~A~~~~~~al  429 (689)
                      ++++|++.+++.+
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
T ss_conf             9999999999981

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.2e-08  Score=76.21  Aligned_cols=95  Identities=26%  Similarity=0.368  Sum_probs=35.9

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHH
Q ss_conf             899999986999999999999981099998999999999998299999999999999929995-------9999999999
Q 005594          339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------AEAYNNLGVL  411 (689)
Q Consensus       339 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~  411 (689)
                      .+|..++..|+|++|+.+|+++++++|++..++.++|.+|..+|++++|+..++++++++|.+       ..++..+|.+
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~   88 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS   88 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999998599999999999998849645899986889998818607789999999986801278898899999999999


Q ss_pred             HHHCCCHHHHHHHHHHHHHCCC
Q ss_conf             9983999999999999984099
Q 005594          412 YRDAGSISLAIDAYEQCLKIDP  433 (689)
Q Consensus       412 ~~~~g~~~~A~~~~~~al~~~p  433 (689)
                      +..++++++|+.+|++++..++
T Consensus        89 ~~~~~~~~~A~~~~~kal~~~~  110 (128)
T d1elra_          89 YFKEEKYKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHCCHHHHHHHHHHHHHCCC
T ss_conf             9993889999999999984599

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.5e-08  Score=77.93  Aligned_cols=101  Identities=10%  Similarity=0.017  Sum_probs=50.5

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHH
Q ss_conf             9999998699999999999998109999899999999999829---9999999999999929995--9999999999998
Q 005594          340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRD  414 (689)
Q Consensus       340 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~  414 (689)
                      ++..+...+++++|.+.|++++.++|.++.+++++|.++...+   ++++|+..+++++..+|..  ..+++++|.+|..
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             98873699999999999999883299989999999999998512678999999999998606993199999999999999


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             39999999999999840999742674
Q 005594          415 AGSISLAIDAYEQCLKIDPDSRNAGQ  440 (689)
Q Consensus       415 ~g~~~~A~~~~~~al~~~p~~~~a~~  440 (689)
                      +|++++|+.+|+++++++|++..+..
T Consensus        85 ~g~~~~A~~~~~~aL~~~P~~~~A~~  110 (122)
T d1nzna_          85 LKEYEKALKYVRGLLQTEPQNNQAKE  110 (122)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             73169999999999976909899999

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.6e-08  Score=77.81  Aligned_cols=104  Identities=7%  Similarity=-0.051  Sum_probs=41.5

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHCC
Q ss_conf             99985599899999999998609999899998999999869---9999999999998109999--899999999999829
Q 005594          308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNF--SQSLNNLGVVYTVQG  382 (689)
Q Consensus       308 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g  382 (689)
                      ..+...+++++|.+.|++++..+|.++.+++++|.++...+   ++++|+..+++++..+|..  ..+++++|.+|..+|
T Consensus         7 n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g   86 (122)
T d1nzna_           7 NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK   86 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             87369999999999999988329998999999999999851267899999999999860699319999999999999973


Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             99999999999999299959999999999
Q 005594          383 KMDAAAEMIEKAIAANPTYAEAYNNLGVL  411 (689)
Q Consensus       383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~  411 (689)
                      ++++|+.+++++++++|++..+...++.+
T Consensus        87 ~~~~A~~~~~~aL~~~P~~~~A~~l~~~I  115 (122)
T d1nzna_          87 EYEKALKYVRGLLQTEPQNNQAKELERLI  115 (122)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             16999999999997690989999999999

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.76  E-value=2.7e-08  Score=77.69  Aligned_cols=119  Identities=20%  Similarity=0.115  Sum_probs=0.0

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----------HCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             72045531299899999999999619999999999999998----------55998999999999986099998999989
Q 005594          271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG----------EMLKFDMAIVFYELAFHFNPHCAEACNNL  340 (689)
Q Consensus       271 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~----------~~g~~~~A~~~~~~al~~~p~~~~~~~~l  340 (689)
                      ..+..+.+.+.+++|+..++++++.+|+++.++..+|.++.          ..+.+++|+..|+++++++|++..+++++
T Consensus         2 d~~~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~l   81 (145)
T d1zu2a1           2 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI   81 (145)
T ss_dssp             SCCCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             71679998736999999999998618831089999999998762133336778878889999999887301205877668


Q ss_pred             HHHHHHCCC-----------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             999998699-----------9999999999981099998999999999998299999999
Q 005594          341 GVIYKDRDN-----------LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE  389 (689)
Q Consensus       341 a~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  389 (689)
                      |.+|..+|+           +++|+++|+++++++|++..++..++.+....+.+.++.+
T Consensus        82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~k  141 (145)
T d1zu2a1          82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYK  141 (145)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999987010113578898867876312110002598889999999999997978999998

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.60  E-value=7.3e-08  Score=74.32  Aligned_cols=134  Identities=9%  Similarity=-0.040  Sum_probs=111.8

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             99985599899999999998609999899998999999869999999999999810999989999999999982999999
Q 005594          308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA  387 (689)
Q Consensus       308 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  387 (689)
                      .-....|++++|+..++++++.+|.+...+..++.++...|++++|+..++++++++|+....+..++.++...+..+++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf             99988889999999999999978999999999999999879999999999999986997389999999999834663789


Q ss_pred             HHHHHHHHH-HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             999999999-299959999999999998399999999999998409997426742
Q 005594          388 AEMIEKAIA-ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN  441 (689)
Q Consensus       388 ~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  441 (689)
                      .....+... ..|.....+...+..+...|+.++|...++++.+..|+....+.+
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~  138 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND  138 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             9875444203586479999999999996799899999999998339999810015

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.53  E-value=3.1e-07  Score=69.49  Aligned_cols=119  Identities=13%  Similarity=0.094  Sum_probs=75.4

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             99998699999999999998109999899999999999829999999999999992999599999999999983999999
Q 005594          342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA  421 (689)
Q Consensus       342 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  421 (689)
                      .-.+..|++++|+..++++++.+|++...+..++.++...|++++|+..++++++++|++..++..++.++...+..+++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf             99988889999999999999978999999999999999879999999999999986997389999999999834663789


Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             9999999840999742674299994212689907999999
Q 005594          422 IDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH  461 (689)
Q Consensus       422 ~~~~~~al~~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~~  461 (689)
                      ...+.+.....+. .........+......++.+++.+..
T Consensus        84 ~~~~~~~~~~~~p-~~~~~~l~~a~~~~~~gd~~~A~~~~  122 (264)
T d1zbpa1          84 AQGAATAKVLGEN-EELTKSLVSFNLSMVSQDYEQVSELA  122 (264)
T ss_dssp             TTSCCCEECCCSC-HHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHCCCCC-HHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             9875444203586-47999999999999679989999999

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.52  E-value=1.5e-07  Score=71.91  Aligned_cols=97  Identities=12%  Similarity=0.110  Sum_probs=48.2

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCC------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--------
Q ss_conf             999998699999999999998109999------------899999999999829999999999999992999--------
Q 005594          341 GVIYKDRDNLDKAVECYQMALSIKPNF------------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--------  400 (689)
Q Consensus       341 a~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------  400 (689)
                      |..++..|+|++|+..|++++++.|+.            ..++.++|.+|..+|++++|+..+++++.+.|.        
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             99999859999999999999986844201020012102799999999999982863001576643553043100245544


Q ss_pred             ---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf             ---5999999999999839999999999999840999742
Q 005594          401 ---YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN  437 (689)
Q Consensus       401 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  437 (689)
                         ...+++++|.+|..+|++++|+..|++++++.|+...
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             3112787752699999888888889999999986687423

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.37  E-value=1.7e-05  Score=55.91  Aligned_cols=61  Identities=16%  Similarity=0.123  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             8999999999998299999999999999929995999999999999839999999999999
Q 005594          368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC  428 (689)
Q Consensus       368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  428 (689)
                      ..++..++.++...|++++|+..+++++..+|.+..+|..++.++...|++.+|+..|+++
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             9999999999988799057899999999849851999999999999855799999999999

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=3.9e-06  Score=60.88  Aligned_cols=25  Identities=8%  Similarity=0.171  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             9999999996799999999999999
Q 005594           51 ALSYANILRSRNKFVDALALYEIVL   75 (689)
Q Consensus        51 ~~~~a~~~~~~g~~~~A~~~~~~~l   75 (689)
                      .+.+|..++..|+|.+|+.+|++++
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al   32 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQAL   32 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             9999999999779999999999999

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=3.6e-06  Score=61.10  Aligned_cols=40  Identities=28%  Similarity=0.341  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             9999999999829999999999999992999599999999
Q 005594          370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG  409 (689)
Q Consensus       370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  409 (689)
                      ++.++|.++...|++++|+..++++++++|++..++.+++
T Consensus        48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~   87 (95)
T d1tjca_          48 VLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             9998726888657739888788779886929799999999

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.22  E-value=3.8e-05  Score=53.18  Aligned_cols=59  Identities=14%  Similarity=0.120  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             89999999998199899999999999839998998999999999859999999999999
Q 005594          193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC  251 (689)
Q Consensus       193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  251 (689)
                      ++..++.++...|++++|+..+++++..+|.+..++..++.++...|++.+|+..|+++
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             99999999988799057899999999849851999999999999855799999999999

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.48  E-value=0.0037  Score=37.70  Aligned_cols=79  Identities=19%  Similarity=0.203  Sum_probs=31.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHH
Q ss_conf             99999999999981099998999999999998----2999999999999999299959999999999998----399999
Q 005594          349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD----AGSISL  420 (689)
Q Consensus       349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~  420 (689)
                      +.++|+.+++++.+.  .++.+...+|.+|..    ..++++|+++|+++.+.  .++.+.+.||.+|..    ..+..+
T Consensus        38 ~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~  113 (133)
T d1klxa_          38 NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ  113 (133)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHCCCCCCCCHHH
T ss_conf             899999987654113--312555567875330135310357888887500025--7406778999999829846778999


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999840
Q 005594          421 AIDAYEQCLKI  431 (689)
Q Consensus       421 A~~~~~~al~~  431 (689)
                      |..+|+++.+.
T Consensus       114 A~~~~~~Aa~~  124 (133)
T d1klxa_         114 AVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHC
T ss_conf             99999999987

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=0.0046  Score=36.97  Aligned_cols=72  Identities=13%  Similarity=0.089  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             899999999999829---9999999999999929995-99999999999983999999999999984099974267
Q 005594          368 SQSLNNLGVVYTVQG---KMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG  439 (689)
Q Consensus       368 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  439 (689)
                      ..+.+++|+++.+..   +.++++..++.++..+|.. .+.++.||..|.++|++++|..+++++++++|++..+.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             1019999999982796889999999999998549505999999999999987329999999999982399849999

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.13  E-value=0.0085  Score=34.88  Aligned_cols=80  Identities=21%  Similarity=0.287  Sum_probs=33.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----CCCHH
Q ss_conf             998999999999986099998999989999998----6999999999999981099998999999999998----29999
Q 005594          314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMD  385 (689)
Q Consensus       314 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~  385 (689)
                      .+.++|+..++++.+.  .++.+.+.+|.+|..    ..++++|+.+|+++.+.  .++.+...+|.+|..    ..+.+
T Consensus        37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~  112 (133)
T d1klxa_          37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK  112 (133)
T ss_dssp             SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             CCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHCCCCCCCCHH
T ss_conf             3899999987654113--312555567875330135310357888887500025--740677899999982984677899


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999992
Q 005594          386 AAAEMIEKAIAA  397 (689)
Q Consensus       386 ~A~~~~~~al~~  397 (689)
                      +|+.+|+++.+.
T Consensus       113 ~A~~~~~~Aa~~  124 (133)
T d1klxa_         113 QAVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999999987

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.0063  Score=35.91  Aligned_cols=52  Identities=12%  Similarity=-0.003  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf             99999999997099978-89999999999839989999999999963999978
Q 005594          100 LAFDSFSEAVKLDPQNA-CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP  151 (689)
Q Consensus       100 ~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  151 (689)
                      +++..++.+++.+|.+. +.++.+|..|.+.|++++|..++++++++.|++..
T Consensus        56 ~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q  108 (124)
T d2pqrb1          56 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  108 (124)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf             99999999985495059999999999999873299999999999823998499

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.09  Score=26.88  Aligned_cols=333  Identities=10%  Similarity=-0.053  Sum_probs=174.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHH---H
Q ss_conf             1659999999996799999999999999709997788995789999928979999999999970999788999999---9
Q 005594           48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG---I  124 (689)
Q Consensus        48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la---~  124 (689)
                      -+..+..|...+..|++.++..+..++ +..|--  .+...-......++  .....+...++.+|+.+.......   .
T Consensus         6 ~r~~y~~a~~a~~~~~~~~~~~~~~~L-~dypL~--pYl~~~~l~~~~~~--~~~~~i~~Fl~~~p~~P~~~~lr~~~l~   80 (450)
T d1qsaa1           6 QRSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPLY--PYLEYRQITDDLMN--QPAVTVTNFVRANPTLPPARTLQSRFVN   80 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTTH--HHHHHHHHHHTGGG--CCHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHH-CCCCCH--HHHHHHHHHHCCCC--CCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             999999999999878989999998560-479877--99999998735156--9999999999878998227999999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             99983998999999999996399997878899999997679999809959999999999962999989899999999981
Q 005594          125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL  204 (689)
Q Consensus       125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  204 (689)
                      .+...+++...+..+    ...|.+...       -...+......|+..+|...+..+-......+.....+       
T Consensus        81 ~L~~~~~w~~~~~~~----~~~p~~~~~-------~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l-------  142 (450)
T d1qsaa1          81 ELARREDWRGLLAFS----PEKPGTTEA-------QCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKL-------  142 (450)
T ss_dssp             HHHHTTCHHHHHHHC----CSCCSSHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHH-------
T ss_pred             HHHHCCCHHHHHHHC----CCCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH-------
T ss_conf             987656889999766----689999999-------99999999875984889999999985478783589999-------


Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf             99899999999999839998998999999999859999999999999950999189996599999972045531299899
Q 005594          205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ  284 (689)
Q Consensus       205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  284 (689)
                               +....+...-....+..........|++..|......    .+....   .++.....+.      .+...
T Consensus       143 ---------~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~----l~~~~~---~~~~a~~~l~------~~p~~  200 (450)
T d1qsaa1         143 ---------FSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ----MPADYQ---TIASAIISLA------NNPNT  200 (450)
T ss_dssp             ---------HHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT----CCGGGH---HHHHHHHHHH------HCGGG
T ss_pred             ---------HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH----CCHHHH---HHHHHHHHHH------HCHHH
T ss_conf             ---------9998744789899999999999886981569988751----785589---9999999988------58575


Q ss_pred             HHHHHHHHHHHCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH----HHHCCCHHHHHHHHH
Q ss_conf             99999999961999999--999999999855998999999999986099998999989999----998699999999999
Q 005594          285 GVAYYKKALYYNWHYAD--AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI----YKDRDNLDKAVECYQ  358 (689)
Q Consensus       285 A~~~~~~al~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~----~~~~g~~~~A~~~~~  358 (689)
                      ...    .....+....  .....+..-....+.+.|...+.......+.....+......    +...+..+.+...+.
T Consensus       201 ~~~----~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~  276 (450)
T d1qsaa1         201 VLT----FARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRD  276 (450)
T ss_dssp             HHH----HHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHH
T ss_pred             HHH----HHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             888----8753788701117899999987424855799998752120235679999999999999987686399999998


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             998109999899999999999829999999999999992999599999999999983999999999999984
Q 005594          359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK  430 (689)
Q Consensus       359 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  430 (689)
                      .......+.......++ .....+++..+...+...-..........+.+|..+..+|+.++|...|..+..
T Consensus       277 ~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         277 DAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHCCCCCCHHHHHHHHH-HHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf             60123466699999999-998829869999999865846242899999999999983981568999999845

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=92.62  E-value=0.22  Score=23.80  Aligned_cols=261  Identities=10%  Similarity=-0.126  Sum_probs=113.5

Q ss_pred             HHHHHHHCCCCHHHHHHH---HHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf             999997099977889957---89999928979999999999970999788999999999983998999999999996399
Q 005594           71 YEIVLEKDSGNVEAHIGK---GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP  147 (689)
Q Consensus        71 ~~~~l~~~p~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  147 (689)
                      +...++.+|+.+......   -..+...++++..+..+    ...|.+.......+......|+..+|...+..+-....
T Consensus        58 i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~  133 (450)
T d1qsaa1          58 VTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK  133 (450)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHC----CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf             99999878998227999999999987656889999766----68999999999999999875984889999999985478


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-----------
Q ss_conf             997878899999997679999809959999999999962999989899999999981998999999999-----------
Q 005594          148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK-----------  216 (689)
Q Consensus       148 ~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-----------  216 (689)
                      ..+.....+...+..                       ...-....+..........|++..|...+..           
T Consensus       134 ~~p~~c~~l~~~~~~-----------------------~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a  190 (450)
T d1qsaa1         134 SQPNACDKLFSVWRA-----------------------SGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASA  190 (450)
T ss_dssp             CCCTHHHHHHHHHHH-----------------------TTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHH
T ss_pred             CCCHHHHHHHHHHHH-----------------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHH
T ss_conf             783589999999874-----------------------478989999999999988698156998875178558999999


Q ss_pred             -------------HHHHCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             -------------9983999899--8999999999859999999999999950999189996599999972045531299
Q 005594          217 -------------AALERPMYAE--AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD  281 (689)
Q Consensus       217 -------------al~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  281 (689)
                                   .....+....  .....+..-....+.+.|...+.......+........   ....++......+.
T Consensus       191 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~  267 (450)
T d1qsaa1         191 IISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQE---LRDIVAWRLMGNDV  267 (450)
T ss_dssp             HHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHTSCSTTC
T ss_pred             HHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH---HHHHHHHHHHHCCC
T ss_conf             999885857588887537887011178999999874248557999987521202356799999---99999999987686


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             89999999999961999999999999999855998999999999986099998999989999998699999999999998
Q 005594          282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL  361 (689)
Q Consensus       282 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  361 (689)
                      ...+............+.......++ .....+++..+...+...-..........+-+|..+...|+.++|...|..+.
T Consensus       268 ~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a  346 (450)
T d1qsaa1         268 TDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (450)
T ss_dssp             CHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             39999999860123466699999999-99882986999999986584624289999999999998398156899999984


Q ss_pred             H
Q ss_conf             1
Q 005594          362 S  362 (689)
Q Consensus       362 ~  362 (689)
                      .
T Consensus       347 ~  347 (450)
T d1qsaa1         347 Q  347 (450)
T ss_dssp             T
T ss_pred             C
T ss_conf             5

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.76  E-value=0.48  Score=21.25  Aligned_cols=130  Identities=15%  Similarity=0.064  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf             59999999996799999999999999709997788995789999928979999999999970999788999999999983
Q 005594           50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE  129 (689)
Q Consensus        50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  129 (689)
                      ..-..|..+.+.|.|+.|..+|...        .-+-.+..++...++++.|.+.+.+.     ++...|......+...
T Consensus        16 d~~~i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~   82 (336)
T d1b89a_          16 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG   82 (336)
T ss_dssp             -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHC--------CCHHHHHHHHHHHCCHHHHHHHHHHC-----CCHHHHHHHHHHHHHC
T ss_conf             8999999998787799999999867--------89999999997031599999999880-----8899999999999727


Q ss_pred             CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             99899999999999639999787889999999767999980995999999999996299998989999999998
Q 005594          130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE  203 (689)
Q Consensus       130 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  203 (689)
                      ....-+... ...+   ....+.       +......+...|.+++.+..++..+...+.+...+..++.+|.+
T Consensus        83 ~e~~la~i~-~~~~---~~~~d~-------l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak  145 (336)
T d1b89a_          83 KEFRLAQMC-GLHI---VVHADE-------LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  145 (336)
T ss_dssp             TCHHHHHHT-TTTT---TTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHH-HHHH---HCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             287899999-9875---357887-------89999999876985999999999975774446799999999998

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.27  E-value=0.86  Score=19.25  Aligned_cols=282  Identities=11%  Similarity=0.012  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             89957899999289799999999999709997889999999999839989999999999963999978788999999976
Q 005594           84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL  163 (689)
Q Consensus        84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l  163 (689)
                      -.-..|..+...|.|+.|...|...        .-+..+..++...++++.|...+.+.     +....       +...
T Consensus        16 d~~~i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~-------~k~~   75 (336)
T d1b89a_          16 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRT-------WKEV   75 (336)
T ss_dssp             -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHH-------HHHH
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHC--------CCHHHHHHHHHHHCCHHHHHHHHHHC-----CCHHH-------HHHH
T ss_conf             8999999998787799999999867--------89999999997031599999999880-----88999-------9999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf             79999809959999999999962999989899999999981998999999999998399989989999999998599999
Q 005594          164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES  243 (689)
Q Consensus       164 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  243 (689)
                      ...+.......-+.. ...   .....++-.......|...|.+++.+.+++..+...+.+...+..++.+|.+.+ .++
T Consensus        76 ~~~l~~~~e~~la~i-~~~---~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~k  150 (336)
T d1b89a_          76 CFACVDGKEFRLAQM-CGL---HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQK  150 (336)
T ss_dssp             HHHHHHTTCHHHHHH-TTT---TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHH
T ss_pred             HHHHHHCCHHHHHHH-HHH---HHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC-HHH
T ss_conf             999972728789999-998---753578878999999987698599999999997577444679999999999869-499


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             99999999950999189996599999972045531299899999999999619999999999999998559989999999
Q 005594          244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY  323 (689)
Q Consensus       244 A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  323 (689)
                      -.+.++..-   .                      .=+..+++..+++.        ..|..+..+|...+++++|+..+
T Consensus       151 l~e~l~~~s---~----------------------~y~~~k~~~~c~~~--------~l~~elv~Ly~~~~~~~~A~~~~  197 (336)
T d1b89a_         151 MREHLELFW---S----------------------RVNIPKVLRAAEQA--------HLWAELVFLYDKYEEYDNAIITM  197 (336)
T ss_dssp             HHHHHHHHS---T----------------------TSCHHHHHHHHHTT--------TCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHCC---C----------------------CCCHHHHHHHHHHC--------CCHHHHHHHHHHCCCHHHHHHHH
T ss_conf             999998602---3----------------------59999999998874--------87499999998558799999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH----------HHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             99986099998999989999998699999999999998109999899----------99999999982999999999999
Q 005594          324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS----------LNNLGVVYTVQGKMDAAAEMIEK  393 (689)
Q Consensus       324 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------~~~la~~~~~~g~~~~A~~~~~~  393 (689)
                      -.-    +.+..-....-.++.+..+.+..-+...-.++..|....-          ...+.....+.++..-...+++.
T Consensus       198 i~~----~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~  273 (336)
T d1b89a_         198 MNH----PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRS  273 (336)
T ss_dssp             HHS----TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHH
T ss_pred             HHC----CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             976----5445669999999972478699999999999759999999999856579989999999853880779999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf             9992999599999999999983999999999999984099
Q 005594          394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP  433 (689)
Q Consensus       394 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  433 (689)
                      ...  .++..+...++.+|...++++.    .++.++..-
T Consensus       274 v~~--~n~~~vn~al~~lyie~~d~~~----l~~~i~~~~  307 (336)
T d1b89a_         274 VQN--HNNKSVNESLNNLFITEEDYQA----LRTSIDAYD  307 (336)
T ss_dssp             HHT--TCCHHHHHHHHHHHHHTTCHHH----HHHHHHHCC
T ss_pred             HHH--CCHHHHHHHHHHHHHCCCHHHH----HHHHHHHHC
T ss_conf             998--1809999999999867124678----999998713