Citrus Sinensis ID: 005598

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------69
Protein Sequence
MEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHIFPHTRGNQQIMPESTRSTNSPAKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASSVLSNLNLSQGDANETSELSNHSDASGEGKLESQPATTMRREPEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccHHHHHHHccccccccccHHHHHHHHHccccccHHHHHccccccccHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHcccccccccccccccccccccccccHHHHHHHHccccccccccHHHHcHHHHHcccccHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEHHHccccEEEEccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHcHHHHHHHHHHHHcccccccccHHHHHHccHHHcccccHHHHHHHccccccccHcHcccccccccccccHHHHHHccccHHHccccHHHccccccccHHHHHHHHcccHHHHHHHHHHHccccccccccccccccHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHEEEccccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHEcccccHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MEYEQTSSLIKEAIRdqvdgvapsSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKqsqicspvpipsdfccplslelmtdpvivasGQTYERAFIKKWIDLglfvcpktrqtlahttlipnYTVKALIANWcelnnvklpdptktaslnqpsplfvhadsnaprdshifphtrgnqqimpestrstnspaknlvslnntregssplhphstsetsysgiagngpglDIARISLtssedrfsnseersmelvgqpsmsksikefpatidtseqsshihnrtASASSVLSnlnlsqgdanetselsnhsdasgegklesqpattmrrepefpsrvmetrsrsqviwrrpserfvprivstsgaetradlsGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIndnnksaiananaiEPLIhvlqtgspeARENAAATLFSLSViednkikigrsgaigplvdllgngtprgkkDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLatipdgrvaigqengIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMvlqegavpplvalsqsgtpRAKEKAQALLSYFRNqrhgnagrg
Flexible Loop (DISEMBL)
MEYEQTSSLIKeairdqvdgvaPSSEILVKVAeslslrsnqEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHIFPHtrgnqqimpestrstnspaKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLDIARISLTSSedrfsnseersmelvgqpsmsKSIKEFPATIDTSEQSSHIHNRTASASSVLSNLNLSQGDANETselsnhsdasgegklesqpattmrrepefpsrvmetrsrsqviwrrpserfvprivstsgaetradlsgieTQVRKLVEdlkstsldtqrEATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYfrnqrhgnagrg
Low Complexity Region (SEG)
MEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHIFPHTRGNQQIMPESTRSTNSPAKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTasassvlsnlnlsQGDANETSELSNHSDASGEGKLESQPATTMRREPEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSindnnksaiananaiEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG
Disordered region (IsUnstruct)
**************************ILVKVAESLSLRSNQEILIEAVALE****************FMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKL***************************************************************************************************************************************************************************************************************************************************************ELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG******NAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVA*******************************
Disordered Region (DISOPRED)
***EQTSSLIK***************ILVKVAESLSLRSNQEILIEAVAL****************EFMDQMISLVTRMH******************SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNN*****************LFVHADSNAPRDSHIFPHTRGNQQIMPESTRSTNSPAKNLVSLNNTRE***************SGIAGNGPGLDIARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATIDTSEQSSHI************NLNLSQGDANETSELSNHSDASGEGKLESQPATTMRREPEFPSRVMETR***********ERFVPRIVS***********GIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR*Q********
Disordered Region (DISEMBL)
********LIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHIFPHTRGNQQI**********PAKNLVSLNN******************SGIAGNGPGLDIARISLTSS********************SKSIKEFPATIDTSEQSSHIHNRTASASSVLSNLNLSQ***********************************************VIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ**********QALLSYFRNQRHGNAGRG
Disordered Region (DISPRO)
MEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDR**********SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLP**************************************MPESTRSTNSPAKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLDIARISLTSSEDRFS*SEERSMELVGQPSMSKSIKEFPATIDTSEQSS*I*NRTASASSVLSNLNLSQGDANETSELSNHSDASGEGKLESQPATTMRREPEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSxxxxxxxxxxxxxxxxxxxxxxxxxxxxFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHIFPHTRGNQQIMPESTRSTNSPAKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASSVLSNLNLSQGDANETSELSNHSDASGEGKLESQPATTMRREPEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	689	2.2.26 [Sep-21-2011]
O22193	826	U-box domain-containing p	yes	no	0.989	0.825	0.658	0.0
Q5XEZ8	707	U-box domain-containing p	no	no	0.462	0.451	0.643	1e-114
Q8GWV5	760	U-box domain-containing p	no	no	0.409	0.371	0.636	7e-95
Q5VRH9	611	U-box domain-containing p	no	no	0.391	0.441	0.520	2e-70
Q9SNC6	660	U-box domain-containing p	no	no	0.423	0.442	0.484	6e-69
Q8GUG9	612	U-box domain-containing p	no	no	0.406	0.457	0.5	7e-67
Q8VZ40	632	U-box domain-containing p	no	no	0.400	0.436	0.523	3e-65
Q9C9A6	628	U-box domain-containing p	no	no	0.409	0.449	0.498	2e-63
Q9ZV31	654	U-box domain-containing p	no	no	0.413	0.435	0.467	7e-63
Q0IMG9	694	E3 ubiquitin-protein liga	no	no	0.391	0.389	0.490	4e-60

>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3

 Score =  879 bits (2272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/699 (65%), Positives = 542/699 (77%), Gaps = 17/699 (2%)

Query: 1   MEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQA 60
           + YE+ SS+I  A+RDQ DGV PS EILVK+ E+  LRSNQEILIEAVALE+ KE AEQ+
Sbjct: 135 LSYEEISSVIDGALRDQRDGVGPSPEILVKIGENTGLRSNQEILIEAVALERQKEMAEQS 194

Query: 61  EKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQ 120
           E   E EF+DQ+I +V RMH+RL++IKQ+Q  S V I +DF CPLSLE+MTDPVIV+SGQ
Sbjct: 195 ENNAEVEFLDQLIVIVNRMHERLLLIKQTQTSS-VAILADFFCPLSLEVMTDPVIVSSGQ 253

Query: 121 TYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASL 180
           TYE+AFIK+WIDLGL VCPKTRQTL HTTLIPNYTVKALIANWCE N+VKLPDP K+ SL
Sbjct: 254 TYEKAFIKRWIDLGLKVCPKTRQTLTHTTLIPNYTVKALIANWCETNDVKLPDPNKSTSL 313

Query: 181 NQPSPLFVHADSNAPRDSHIFPHTRGNQ-QIMPESTRSTNSPAKNLVSLNNTREGSSPLH 239
           N+ SPL    DS     + +      N+      S+  T  P+    S    REG+SP  
Sbjct: 314 NELSPLLSCTDSIPSTGADVSARKVSNKSHDWDASSSETGKPS--FSSRATEREGASPSR 371

Query: 240 PHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATI 299
           P S    S  GI+GNG GLD  R SL   EDR ++S E   +  G+ S+S + +    ++
Sbjct: 372 PASALGASSPGISGNGYGLDARRGSLNDFEDRSNDSRELRTDAPGRSSVSSTTR---GSV 428

Query: 300 DTSEQSSHIHNRTASASSVLSNLNLSQGDANETSELSNH-----SDASGE---GKLESQP 351
           +  + S + H+R+ SA+S +SN    + DANE SE S H     SDASGE   G L +  
Sbjct: 429 ENGQTSENHHHRSPSATSTVSNEEFPRADANENSEESAHATPYSSDASGEIRSGPLAATT 488

Query: 352 ATTMRRE-PEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLV 410
           +   RR+  +F  + M+ R+R Q  WRRPSER   RIVS    ETR DLS +ETQV+KLV
Sbjct: 489 SAATRRDLSDFSPKFMDRRTRGQ-FWRRPSERLGSRIVSAPSNETRRDLSEVETQVKKLV 547

Query: 411 EDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTAL 470
           E+LKS+SLDTQR+ATAELRLLAKHNMDNR+VI N GAI +LV++L+S+++  QENAVTAL
Sbjct: 548 EELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTAL 607

Query: 471 LNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAI 530
           LNLSINDNNK AIA+A AIEPLIHVL+ GS EA+EN+AATLFSLSVIE+NKIKIG+SGAI
Sbjct: 608 LNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGAI 667

Query: 531 GPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVA 590
           GPLVDLLGNGTPRGKKDAATALFNLSI+ ENKA IVQ+GAV++L+DLMDPAAGMVDKAVA
Sbjct: 668 GPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMVDKAVA 727

Query: 591 VLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQE 650
           VLANLATIP+GR AIGQE GIP+LVEVVELGSARGKENAAAALLQL TNS RFC+MVLQE
Sbjct: 728 VLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQE 787

Query: 651 GAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 689
           GAVPPLVALSQSGTPRA+EKAQALLSYFRNQRHGNAGRG
Sbjct: 788 GAVPPLVALSQSGTPRAREKAQALLSYFRNQRHGNAGRG 826

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1

 Score =  412 bits (1058), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/323 (64%), Positives = 262/323 (81%), Gaps = 4/323 (1%)

Query: 370 SRSQVIWRRPSERFV--PRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAE 427
           +RS   W+ P ER    P I+  +  ET +  S IET+V+KL++DLKS+SLDTQREATA 
Sbjct: 386 TRSNTPWKFPEERHWRHPGIIPATVRETGSS-SSIETEVKKLIDDLKSSSLDTQREATAR 444

Query: 428 LRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANAN 487
           +R+LA+++ DNR+VIA C AI  LV +L+S++ +IQ +AVT LLNLSINDNNKS IA + 
Sbjct: 445 IRILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAESG 504

Query: 488 AIEPLIHVLQTGS-PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKK 546
           AI PLIHVL+TG   EA+ N+AATLFSLSVIE+ K +IG +GAI PLVDLLG+G+  GKK
Sbjct: 505 AIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKK 564

Query: 547 DAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIG 606
           DAATALFNLSI+HENK ++++AGAV++LV+LMDPA GMV+KAV VLANLAT+ +G++AIG
Sbjct: 565 DAATALFNLSIHHENKTKVIEAGAVRYLVELMDPAFGMVEKAVVVLANLATVREGKIAIG 624

Query: 607 QENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPR 666
           +E GIPVLVEVVELGSARGKENA AALLQLCT+S +FC+ V++EG +PPLVAL++SGT R
Sbjct: 625 EEGGIPVLVEVVELGSARGKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTAR 684

Query: 667 AKEKAQALLSYFRNQRHGNAGRG 689
            KEKAQ LL YF+  R  N  RG
Sbjct: 685 GKEKAQNLLKYFKAHRQSNQRRG 707

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2

 Score =  348 bits (894), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 180/283 (63%), Positives = 224/283 (79%), Gaps = 1/283 (0%)

Query: 408 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAV 467
           KLVEDLKS S   +  A AE+R L  ++++NR+ I  CGAI  L+ +L+S E   QE+AV
Sbjct: 476 KLVEDLKSGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQEHAV 535

Query: 468 TALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS 527
           TALLNLSI++ NK+ I    AIEPL+HVL TG+  A+EN+AA+LFSLSV++ N+ +IG+S
Sbjct: 536 TALLNLSISELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQS 595

Query: 528 -GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVD 586
             AI  LV+LLG GT RGKKDAA+ALFNLSI H+NKARIVQA AVK+LV+L+DP   MVD
Sbjct: 596 NAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDPDLEMVD 655

Query: 587 KAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSM 646
           KAVA+LANL+ + +GR AI +E GIP+LVE V+LGS RGKENAA+ LLQLC NS +FC++
Sbjct: 656 KAVALLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTL 715

Query: 647 VLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 689
           VLQEGA+PPLVALSQSGT RAKEKAQ LLS+FRNQR     +G
Sbjct: 716 VLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQRDARMKKG 758

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score =  267 bits (682), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/271 (52%), Positives = 197/271 (72%), Gaps = 1/271 (0%)

Query: 409 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVT 468
           L+  L+S + D QR A  E+RLLAK N++NR+ IA  GAI +LV++L SS+ + QE+AVT
Sbjct: 328 LMNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVT 387

Query: 469 ALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSG 528
           ALLNLSI++NNK++I +++AI  ++ VL+TGS E RENAAATLFSLSV+++NK+ IG +G
Sbjct: 388 ALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAG 447

Query: 529 AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD-LMDPAAGMVDK 587
           AI PL++LL +G+PRGKKDAATA+FNL IY  NK R V+AG V HL++ L+DP  GM+D+
Sbjct: 448 AIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDE 507

Query: 588 AVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMV 647
           A+++L+ LA  P+G++ I +   IP LVEV++ GS R +ENAAA L  LC+  +      
Sbjct: 508 ALSLLSILAGNPEGKIVIARSEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAA 567

Query: 648 LQEGAVPPLVALSQSGTPRAKEKAQALLSYF 678
              G    L  LS++GT RAK KA ++L   
Sbjct: 568 KAAGVEDALKELSETGTDRAKRKASSILELM 598

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score =  262 bits (670), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 145/299 (48%), Positives = 198/299 (66%), Gaps = 7/299 (2%)

Query: 378 RPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD 437
           +P     PR VS+  +   A+      ++  L+  L   + + QR A  E+RLLAK N D
Sbjct: 332 KPPSSLRPRKVSSFSSPAEAN------KIEDLMWRLAYGNPEDQRSAAGEIRLLAKRNAD 385

Query: 438 NRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ 497
           NR+ IA  GAI +LV +L + +++IQE++VTALLNLSI +NNK AI +A AI  ++ VL+
Sbjct: 386 NRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIVQVLK 445

Query: 498 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 557
            GS EARENAAATLFSLSVI++NK+ IG  GAI PLV LL  GT RGKKDAATALFNL I
Sbjct: 446 KGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCI 505

Query: 558 YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVE 616
           Y  NK + ++AG +  L  L+ +P +GMVD+A+A+LA L++ P+G+  IG  + +P LVE
Sbjct: 506 YQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEGKAIIGSSDAVPSLVE 565

Query: 617 VVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 675
            +  GS R +ENAAA L+ LC+   +      + G + PL+ L+ +GT R K KA  LL
Sbjct: 566 FIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLL 624

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2

 Score =  255 bits (652), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 141/282 (50%), Positives = 190/282 (67%), Gaps = 2/282 (0%)

Query: 400 SGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE 459
           SG  + +R LV+ L S S + +R A +E+R L+K + DNR++IA  GAI +LV++L S +
Sbjct: 327 SGDMSVIRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSED 386

Query: 460 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED 519
              QENA+T +LNLSI +NNK  I  A A+  ++ VL+ G+ EARENAAATLFSLS+ ++
Sbjct: 387 VATQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLADE 446

Query: 520 NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD 579
           NKI IG SGAI  LVDLL NGTPRGKKDAATALFNL IYH NK R V+AG V  LV ++ 
Sbjct: 447 NKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLS 506

Query: 580 PAA--GMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 637
            +    MVD+A+ +L+ LA   D + AI + N +P L+ +++    R +ENAAA LL LC
Sbjct: 507 DSTRHRMVDEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQTRNRENAAAILLSLC 566

Query: 638 TNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 679
              +     + + GAV PL+ LS++GT R K KA +LL   R
Sbjct: 567 KRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLR 608

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1

 Score =  250 bits (638), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 145/277 (52%), Positives = 191/277 (68%), Gaps = 1/277 (0%)

Query: 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQ 463
           T V  L+E L + + + QR A  ELRLLAK N+DNR+ IA  GAI +LV++L S + + Q
Sbjct: 345 TFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQ 404

Query: 464 ENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 523
           E++VTALLNLSIN+ NK AI +A AI  ++ VL+ GS EARENAAATLFSLSVI++NK+ 
Sbjct: 405 EHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVA 464

Query: 524 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAA 582
           IG +GAI  L+ LL  GT RGKKDAATA+FNL IY  NK+R V+ G V  L  L+ D   
Sbjct: 465 IGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGG 524

Query: 583 GMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSR 642
           GMVD+A+A+LA L+T  +G+ AI +   IPVLVE++  GS R +ENAAA L  LC  +  
Sbjct: 525 GMVDEALAILAILSTNQEGKTAIAEAESIPVLVEIIRTGSPRNRENAAAILWYLCIGNIE 584

Query: 643 FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 679
             ++  + GA   L  L+++GT RAK KA +LL   +
Sbjct: 585 RLNVAREVGADVALKELTENGTDRAKRKAASLLELIQ 621

Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1

 Score =  244 bits (622), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 142/285 (49%), Positives = 191/285 (67%), Gaps = 3/285 (1%)

Query: 398 DLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS 457
           DLSG  + +R LV  L S S++ +R A +E+R L+K + DNR++IA  GAI +LV +L S
Sbjct: 335 DLSGDMSAIRALVCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTS 394

Query: 458 -SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV 516
             +T+ QENAVT +LNLSI ++NK  I  A A+  ++ VL+ GS EARENAAATLFSLS+
Sbjct: 395 DGDTETQENAVTCILNLSIYEHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSL 454

Query: 517 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD 576
            ++NKI IG SGAI  LVDLL  G+ RGKKDAATALFNL IY  NK R V+AG VK LV 
Sbjct: 455 ADENKIIIGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVK 514

Query: 577 LMDPAAG--MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 634
           ++  ++   M D+A+ +L+ LA+    + AI + N IP L++ ++    R +ENAAA LL
Sbjct: 515 MLTDSSSERMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILL 574

Query: 635 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 679
            LC   +     + + GAV PL+ LS+ GT RAK KA +LL   R
Sbjct: 575 CLCKRDTEKLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLR 619

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1

 Score =  242 bits (617), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 136/291 (46%), Positives = 200/291 (68%), Gaps = 6/291 (2%)

Query: 405 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQ 463
           ++ +L+  L S   + +R A  E+RLLAK N  NR+ IA  GAI +LV++L  S++++ Q
Sbjct: 356 KIEELLLKLTSQQPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQ 415

Query: 464 ENAVTALLNLSINDNNKSAIA-NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKI 522
           E+AVT++LNLSI   NK  I  ++ A+  ++HVLQ GS EARENAAATLFSLSVI++NK+
Sbjct: 416 EHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKV 475

Query: 523 KIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPA 581
            IG +GAI PLV LL  G+ RGKKDAATALFNL I+  NK + V+AG V  L+ L+ +P 
Sbjct: 476 TIGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPE 535

Query: 582 AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 641
           +GMVD+++++LA L++ PDG+  +G  + +PVLV+ +  GS R KEN+AA L+ LC+ + 
Sbjct: 536 SGMVDESLSILAILSSHPDGKSEVGAADAVPVLVDFIRSGSPRNKENSAAVLVHLCSWNQ 595

Query: 642 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL---SYFRNQRHGNAGRG 689
           +      + G +  L+ ++++GT R K KA  LL   S F +Q+  ++G G
Sbjct: 596 QHLIEAQKLGIMDLLIEMAENGTDRGKRKAAQLLNRFSRFNDQQKQHSGLG 646

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2

 Score =  233 bits (593), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 134/273 (49%), Positives = 188/273 (68%), Gaps = 3/273 (1%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 465
           +  L+  L S   + QR A AELRLLAK N +NR+ IA  GAI +L+ +L SS+ + QE+
Sbjct: 369 IDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEH 428

Query: 466 AVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 525
           AVTALLNLSI+++NK++I ++ A+  ++HVL+ GS EARENAAATLFSLSVI++ K+ IG
Sbjct: 429 AVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIG 488

Query: 526 RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGM 584
             GAI  LV LLG G+ RGKKDAA ALFNL IY  NK R ++AG V  ++ L+ +P   +
Sbjct: 489 GMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGAL 548

Query: 585 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC 644
           +D+A+A+L+ L++ P+G+ AIG    +PVLVE++  G+ R +ENAAA +L LC+      
Sbjct: 549 MDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLV 608

Query: 645 SMVLQE--GAVPPLVALSQSGTPRAKEKAQALL 675
            +   +  G + PL  L+ +GT R K KA  LL
Sbjct: 609 HLARAQECGIMVPLRELALNGTDRGKRKAVQLL 641

E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	689
224081810	822	predicted protein [Populus trichocarpa]	0.966	0.810	0.748	0.0
359480587	809	PREDICTED: U-box domain-containing prote	0.962	0.819	0.712	0.0
255567955	799	ubiquitin-protein ligase, putative [Rici	0.928	0.801	0.731	0.0
356565898	841	PREDICTED: U-box domain-containing prote	0.991	0.812	0.697	0.0
356539692	838	PREDICTED: U-box domain-containing prote	0.994	0.817	0.695	0.0
449463969	841	PREDICTED: U-box domain-containing prote	0.992	0.813	0.699	0.0
28974687	790	arm repeat-containing protein [Nicotiana	0.937	0.817	0.674	0.0
297825203	829	armadillo/beta-catenin repeat family pro	0.989	0.822	0.659	0.0
240254516	829	RING/U-box domain and ARM repeat-contain	0.989	0.822	0.658	0.0
334184386	826	RING/U-box domain and ARM repeat-contain	0.989	0.825	0.658	0.0

>gi|224081810|ref|XP_002306495.1| predicted protein [Populus trichocarpa] gi|222855944|gb|EEE93491.1| predicted protein [Populus trichocarpa]

 Score =  978 bits (2528), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/700 (74%), Positives = 584/700 (83%), Gaps = 34/700 (4%)

Query: 3   YEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEK 62
           Y QTSS+IKEAI DQ +GV PSSEILVK+++SL LRSNQEILIEAVALEKLKENAEQAEK
Sbjct: 144 YVQTSSIIKEAISDQEEGVGPSSEILVKISDSLCLRSNQEILIEAVALEKLKENAEQAEK 203

Query: 63  AGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTY 122
             EAEF+DQ+I+LVTRMH+RLV+IKQSQ  SPVPIP+DFCCPLSLELMTDPVIVASGQTY
Sbjct: 204 TAEAEFIDQIITLVTRMHERLVLIKQSQTYSPVPIPADFCCPLSLELMTDPVIVASGQTY 263

Query: 123 ERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQ 182
           ERAFIK WI+LGL VCPKT+QTLAHT LI NYTVKALIANWCE NNVKLPDP K+ S NQ
Sbjct: 264 ERAFIKNWIELGLTVCPKTQQTLAHTNLITNYTVKALIANWCESNNVKLPDPIKSMSFNQ 323

Query: 183 PSPLFVHADSNAPRDSHIFPHTRGNQQIMPESTRSTNSPAKNLVSLNNT-REGSSPLHPH 241
           PSPL                       I  ES ++T SP +N++S +   REGSSPLH H
Sbjct: 324 PSPLL---------------------PISSESNQATGSPGQNMISSSGIQREGSSPLHSH 362

Query: 242 STSETSYSGIAGNGPGLDIARIS-LTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATID 300
           STSE+S S I GNG GLDIARIS LTSSE+R SNSEER+++ V   S S S KE    + 
Sbjct: 363 STSESSLSVIVGNGQGLDIARISSLTSSEERSSNSEERNLDSVHHCSASPSRKEVSTAVR 422

Query: 301 TSEQSSHIHNRTASASSVLSNLNLSQG---DANETSELSNH-----SDASGEGKLESQPA 352
                S  HNR+ASASS L +    QG   DANE+SE SNH     SD SGE K E Q +
Sbjct: 423 ADGLLSQNHNRSASASSALGHAAFPQGASGDANESSEFSNHLTSYSSDISGEVKPEPQAS 482

Query: 353 TTMR---REPEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKL 409
           + +    REPEFPSR+++TRSRSQ IWRRPS+R VPRIVS+S  ETRADL+GIET+VR L
Sbjct: 483 SALHTPHREPEFPSRLVDTRSRSQTIWRRPSDRLVPRIVSSSAIETRADLAGIETEVRNL 542

Query: 410 VEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTA 469
           VEDLKST +DTQR+ATA+LRLLAKHNMDNR+VIAN GAI++LV++L S++ KIQENAVTA
Sbjct: 543 VEDLKSTLVDTQRDATAKLRLLAKHNMDNRIVIANFGAISLLVNLLRSTDIKIQENAVTA 602

Query: 470 LLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGA 529
           LLNLSINDNNK+AI NA+AIEPLIHVL+TGSPEA+EN+AATLFSLSVIEDNK++IGRSGA
Sbjct: 603 LLNLSINDNNKTAIGNADAIEPLIHVLETGSPEAKENSAATLFSLSVIEDNKVRIGRSGA 662

Query: 530 IGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAV 589
           I PLVDLLGNGTPRGKKDAATALFNLSI+HENK RIVQAGAVKHLV+LMDPAAGMVDKAV
Sbjct: 663 IVPLVDLLGNGTPRGKKDAATALFNLSIFHENKDRIVQAGAVKHLVELMDPAAGMVDKAV 722

Query: 590 AVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ 649
           AVLANLATIP+GR AIGQE GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC MVLQ
Sbjct: 723 AVLANLATIPEGRNAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCHMVLQ 782

Query: 650 EGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 689
           EGAVPPLVALSQSGTPRAKEKAQALLS+FRNQRHGNAGR 
Sbjct: 783 EGAVPPLVALSQSGTPRAKEKAQALLSFFRNQRHGNAGRA 822

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480587|ref|XP_002283956.2| PREDICTED: U-box domain-containing protein 4-like [Vitis vinifera]

 Score =  960 bits (2481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/696 (71%), Positives = 565/696 (81%), Gaps = 33/696 (4%)

Query: 1   MEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQA 60
           M YEQTS++++EAIR+QV G   SSE L+K+A+ LSLRSNQE+LIEAVALEKLKENAEQA
Sbjct: 140 MGYEQTSTILQEAIRNQVQGAGSSSESLMKLADCLSLRSNQELLIEAVALEKLKENAEQA 199

Query: 61  EKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQ 120
           EK  EAE++DQMI+L T+MHDR ++ KQSQ C+P+PIP+DFCCPLSLELMTDPVIVASGQ
Sbjct: 200 EKTEEAEYIDQMITLATQMHDRFIITKQSQSCNPIPIPADFCCPLSLELMTDPVIVASGQ 259

Query: 121 TYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASL 180
           TYERAFI+KW+DLGL VCPKTRQTLAHT LIPNYTVKALIANWCE NNVKLPDP K+ +L
Sbjct: 260 TYERAFIRKWLDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKLPDPVKSLNL 319

Query: 181 NQPSPLFVHADSNAPRDSHIFPHTRGNQQIMPESTRSTNSPAKNLVSLNNT-REGSSPLH 239
           NQ SPL  HA+  APRD+H  PH+R +Q + PESTR T SP  NLVS     REG+SP H
Sbjct: 320 NQSSPLLAHAEPGAPRDAHNVPHSRASQPMSPESTRFTGSPGNNLVSSGGIHREGTSPSH 379

Query: 240 PHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATI 299
           P S SE S SG+AGNG G DI               E+RSM+ VGQPS        P+  
Sbjct: 380 PRSRSEGSLSGVAGNGHGSDI---------------EDRSMDSVGQPST------LPSRK 418

Query: 300 DTSEQSSHIHN--RTASASSVLSNLNLSQGDANETSELSNHSDASGEGKLESQPA----T 353
           ++S  +    N  RTASAS++  N N S+G       + + SD SGE   E Q A    T
Sbjct: 419 ESSNSTGADANLCRTASASTLPCNANSSEGTLGADIGVYS-SDVSGEMTPEPQAAAANLT 477

Query: 354 TMRREPEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDL 413
           T +REP+FP R +ETR+RSQ +WRRPSERFVPRIVS+   ETRADLSG+E QV++LVEDL
Sbjct: 478 TPQREPDFPLR-LETRARSQAMWRRPSERFVPRIVSSPTTETRADLSGVEAQVQRLVEDL 536

Query: 414 KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNL 473
           KS S++TQREAT+ELRLLAKHNMDNR+VIANCGAI++LV++L S + K QENAVTALLNL
Sbjct: 537 KSESVETQREATSELRLLAKHNMDNRIVIANCGAISLLVNLLRSEDAKAQENAVTALLNL 596

Query: 474 SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPL 533
           SINDNNK+AIANA AIEPLIHVLQTGSPEA+EN+AATLFSLSVIEDNK  IGRSGAI PL
Sbjct: 597 SINDNNKTAIANAQAIEPLIHVLQTGSPEAKENSAATLFSLSVIEDNKAAIGRSGAIAPL 656

Query: 534 VDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLA 593
           V+LLGNGTPRGKKDAATALFNLSI+HENK RIVQAGAV+HLV+LMDPAAGMVDKAVAVLA
Sbjct: 657 VELLGNGTPRGKKDAATALFNLSIFHENKTRIVQAGAVRHLVELMDPAAGMVDKAVAVLA 716

Query: 594 NLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAV 653
           NLATI +GR AI Q  GIPVLVEVVELGSARGKENAAAALLQLC+NSSR C  VLQEGAV
Sbjct: 717 NLATITEGRHAIDQAGGIPVLVEVVELGSARGKENAAAALLQLCSNSSRSCIKVLQEGAV 776

Query: 654 PPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 689
           PPLVALSQSGTPRAKEKAQALL+ FR+ RH  AGRG
Sbjct: 777 PPLVALSQSGTPRAKEKAQALLNCFRS-RH--AGRG 809

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567955|ref|XP_002524955.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223535790|gb|EEF37452.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/670 (73%), Positives = 549/670 (81%), Gaps = 30/670 (4%)

Query: 33  ESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQIC 92
           + LS  S +EILIEAVALEKLKENAEQAEK  EAE  DQMISL             SQ C
Sbjct: 147 DELSTSSLEEILIEAVALEKLKENAEQAEKPREAELFDQMISL-------------SQTC 193

Query: 93  SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 152
           S VPIP+DFCCPLSLELMTDPVIV SGQTYERAFIK WI+LGL VCPKTRQTLAHT LIP
Sbjct: 194 SHVPIPADFCCPLSLELMTDPVIVGSGQTYERAFIKNWIELGLTVCPKTRQTLAHTNLIP 253

Query: 153 NYTVKALIANWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHIFPHTRGNQQIMP 212
           NYTVKALIANWCE NNVKLPDP K+ S NQPS L +HA+S  PR SH F ++RGNQ + P
Sbjct: 254 NYTVKALIANWCESNNVKLPDPVKSVSFNQPSALLIHAESGTPRGSHGF-YSRGNQPMSP 312

Query: 213 ESTRSTNSPAKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLDIARISLTSSEDRF 272
           ESTRST+SP +N +S +  RE +SP HP STS++S SGI GN  GLD+ARISL SSE+R 
Sbjct: 313 ESTRSTDSPDRNWISSSVHRESTSPCHPRSTSDSSLSGIVGNEQGLDMARISLASSEERS 372

Query: 273 SNSEERSMELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASSVLSNLNLSQG---DA 329
            N E R+ +   + S+S S  E    +   E  +  H+R ASASS+  N + SQG   D 
Sbjct: 373 VNLEGRNRDSGVRHSVSPSRNEVSNAVRVGEPIAQSHSRNASASSI--NASFSQGAQVDT 430

Query: 330 NETSELSNH-----SDASGEGKLESQPATTM-----RREPEFPSRVMETRSRSQVIWRRP 379
           N++SE+ NH     SD SGE K E+Q +T +      REPEF  R +ETRSRSQ IWRRP
Sbjct: 431 NDSSEVLNHLTSYSSDNSGEVKAETQASTALNSPRPHREPEFAPRFIETRSRSQTIWRRP 490

Query: 380 SERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNR 439
           S+R +PRIVS+   ETRADLSG+ETQVR LVEDLKS S+D QR ATAELRLLAKHNMDNR
Sbjct: 491 SDRLIPRIVSSPAIETRADLSGVETQVRNLVEDLKSDSIDVQRAATAELRLLAKHNMDNR 550

Query: 440 MVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG 499
           +VIANCGAINILV++L S++ KIQENAVTALLNLSINDNNK+AIANA+AI PLIHVL+TG
Sbjct: 551 IVIANCGAINILVNLLRSADAKIQENAVTALLNLSINDNNKTAIANADAIGPLIHVLETG 610

Query: 500 SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 559
           SPEA+EN+AATLFSLSVIEDNK++IGRSGA+GPLVDLLGNGTPRGKKDAATALFNLSI+H
Sbjct: 611 SPEAKENSAATLFSLSVIEDNKVRIGRSGAVGPLVDLLGNGTPRGKKDAATALFNLSIFH 670

Query: 560 ENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE 619
           ENKARIVQAGAVKHLV+LMDPAAGMVDKAVAVLANLATIP+GR AIGQE GIPVLVEVVE
Sbjct: 671 ENKARIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRTAIGQEGGIPVLVEVVE 730

Query: 620 LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 679
           LGSARGKENAAAALLQLCTNS+RFC+ VLQEGAVPPLVALSQSGTPRAKEKAQALLS+FR
Sbjct: 731 LGSARGKENAAAALLQLCTNSNRFCNTVLQEGAVPPLVALSQSGTPRAKEKAQALLSFFR 790

Query: 680 NQRHGNAGRG 689
           NQRHGNA RG
Sbjct: 791 NQRHGNA-RG 799

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565898|ref|XP_003551173.1| PREDICTED: U-box domain-containing protein 4-like [Glycine max]

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/701 (69%), Positives = 566/701 (80%), Gaps = 18/701 (2%)

Query: 3   YEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEK 62
           +E+ S +IKEAI + ++ V PSSE+L K+A+SL LRSNQE+LIEAVALE+LKENAEQ EK
Sbjct: 145 HEEISPVIKEAITEHLENVGPSSELLTKIADSLGLRSNQEVLIEAVALERLKENAEQTEK 204

Query: 63  AGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTY 122
             EAEF+DQMI++VTRMH+RLVM+KQ+Q  SPV IP+DFCCPLSLELMTDPVIVASGQTY
Sbjct: 205 TAEAEFIDQMIAVVTRMHERLVMLKQAQSSSPVSIPADFCCPLSLELMTDPVIVASGQTY 264

Query: 123 ERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQ 182
           ERAFIK WIDLGL VCPKTRQTL HT LIPNYTVKALIANWCE NNV+L DPTK+ +LNQ
Sbjct: 265 ERAFIKNWIDLGLTVCPKTRQTLVHTHLIPNYTVKALIANWCESNNVQLVDPTKSTNLNQ 324

Query: 183 PSPLFVHADSNAPRDSHIFPHTRGNQQIMPESTRSTN--SPAKNLVSLNNTREGSSPLHP 240
            S L  + +S   R+S +F H+R NQ   PES RS +  SPA NL S    REG+SPLHP
Sbjct: 325 ASVLHGYMESGTTRESPVFAHSRSNQPSSPESARSCSFSSPANNLTSGGTQREGTSPLHP 384

Query: 241 HSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATID 300
            STSE S+ G+  NG  +D+ARIS    +DR ++S+E S++    PSMS S +E  +   
Sbjct: 385 RSTSEGSFRGMV-NGQYMDLARISPEGLDDRSASSDESSVDSASHPSMSPSRRESSSAFS 443

Query: 301 TSEQSSHIHNRTASASSVLSNLNL---SQGDANETSELSNHSDASGEGKLESQPAT---- 353
           + +  +HI  R  S SS LSN N    +Q D N   +LS  +  S E   E  P T    
Sbjct: 444 SEQSQTHI--RAVSDSSALSNANFPQETQDDDNNAPQLSTSAGHSREASGELNPGTETGG 501

Query: 354 -----TMRREPEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRK 408
                ++ REPEFP R +ETRSRSQ IWRRPSER VPRIVS+   ETRADLS IETQVR 
Sbjct: 502 TTAVPSVHREPEFPLR-LETRSRSQAIWRRPSERHVPRIVSSPVVETRADLSAIETQVRN 560

Query: 409 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVT 468
           LVE L+S+ +DTQREATAELRLLAKHNMDNR+ IANCGAIN+LVD+L S++T IQENAVT
Sbjct: 561 LVEGLRSSDVDTQREATAELRLLAKHNMDNRIAIANCGAINLLVDLLQSTDTTIQENAVT 620

Query: 469 ALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSG 528
           ALLNLSINDNNK+AIANA AIEPLIHVL+TGSPEA+EN+AATLFSLSVIE+NKI IGRSG
Sbjct: 621 ALLNLSINDNNKTAIANAGAIEPLIHVLETGSPEAKENSAATLFSLSVIEENKIFIGRSG 680

Query: 529 AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKA 588
           AIGPLV+LLG+GTPRGK+DAATALFNLSI+HENK RIVQAGAV+HLVDLMDPAAGMVDKA
Sbjct: 681 AIGPLVELLGSGTPRGKRDAATALFNLSIFHENKNRIVQAGAVRHLVDLMDPAAGMVDKA 740

Query: 589 VAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVL 648
           VAVLANLATIP+GR AIG E GIPVLVEVVELGSARGKENAAAALL LC +S +F S VL
Sbjct: 741 VAVLANLATIPEGRNAIGDEGGIPVLVEVVELGSARGKENAAAALLHLCLHSPKFSSKVL 800

Query: 649 QEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 689
           Q+GAVPPLVALSQSGTPRAKEKAQALL+ F++QRHG++GRG
Sbjct: 801 QQGAVPPLVALSQSGTPRAKEKAQALLNQFKSQRHGSSGRG 841

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539692|ref|XP_003538329.1| PREDICTED: U-box domain-containing protein 4-like [Glycine max]

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/703 (69%), Positives = 566/703 (80%), Gaps = 18/703 (2%)

Query: 1   MEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQA 60
           + +E+TS +I+EAI + ++ V PSSE+L K+A+SL LRSNQE+LIEAVALE+LKENAEQ 
Sbjct: 140 LGHEETSPVIQEAITEHLENVGPSSELLSKIADSLGLRSNQEVLIEAVALERLKENAEQT 199

Query: 61  EKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQ 120
           EK  EAE +DQMI++VT MH+RLVM+KQ+Q  SPVPIP+DFCCPLSLELMTDPVIVASGQ
Sbjct: 200 EKTAEAELIDQMIAVVTHMHERLVMLKQAQSISPVPIPADFCCPLSLELMTDPVIVASGQ 259

Query: 121 TYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASL 180
           TYERAFIK WIDLGL VC KTRQTL HT LIPNYTVKALIANWCE NNV+L DPTK+ +L
Sbjct: 260 TYERAFIKNWIDLGLTVCAKTRQTLVHTNLIPNYTVKALIANWCESNNVQLVDPTKSTNL 319

Query: 181 NQPSPLFVHADSNAPRDSHIFPHTRGNQQIMPES--TRSTNSPAKNLVSLNNTREGSSPL 238
           NQ   L  + +S   R+S +F H+R NQ   PES  +RS +SPA NL S    REG+SPL
Sbjct: 320 NQACVLHGYMESGTTRESPVFVHSRSNQPSSPESAGSRSFSSPANNLTSGGTQREGTSPL 379

Query: 239 HPHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPAT 298
           HP STSE S SG+  NG  +D+ARIS    +DR ++S+E S++    PSMS S +E  + 
Sbjct: 380 HPRSTSEGSLSGMV-NGQYMDLARISPEGLDDRSASSDESSVDSASHPSMSPSRRESSSA 438

Query: 299 IDTSEQSSHIHNRTASASSVLSNLNLSQ---GDANETSELSNHSDASGE--GKLESQPAT 353
             + +  +HI  R  S SS LSN N  Q    D N   +LS  +  S E  G+L   P T
Sbjct: 439 FSSEQSQTHI--RAVSDSSALSNANFPQETEDDNNNAPQLSTSAGHSREASGELNPGPET 496

Query: 354 -------TMRREPEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQV 406
                  ++ REPEFP R +ETRSRSQ IWRRPSER VPRIVS+   ETRADLS IETQV
Sbjct: 497 AGTTSVASVHREPEFPLR-LETRSRSQAIWRRPSERHVPRIVSSPVVETRADLSAIETQV 555

Query: 407 RKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENA 466
           R LVE LKS+ +DTQREATAELRLLAKHNMDNR+ IANCGAIN+LVD+L S++T IQENA
Sbjct: 556 RNLVEGLKSSDVDTQREATAELRLLAKHNMDNRIAIANCGAINVLVDLLQSTDTTIQENA 615

Query: 467 VTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR 526
           VTALLNLSINDNNK+AIANA AIEPLIHVL+TGSPEA+EN+AATLFSLSVIE+NKI IGR
Sbjct: 616 VTALLNLSINDNNKTAIANAGAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKIFIGR 675

Query: 527 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVD 586
           SGAIGPLV+LLG+GTPRGKKDAATALFNLSI+HENK  IVQAGAV+HLVDLMDPAAGMVD
Sbjct: 676 SGAIGPLVELLGSGTPRGKKDAATALFNLSIFHENKNWIVQAGAVRHLVDLMDPAAGMVD 735

Query: 587 KAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSM 646
           KAVAVLANLATIP+GR AIG E GIPVLVEVVELGSARGKENAAAALL LC +S+++   
Sbjct: 736 KAVAVLANLATIPEGRNAIGDEGGIPVLVEVVELGSARGKENAAAALLHLCLHSTKYLGK 795

Query: 647 VLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 689
           VLQ+GAVPPLVALSQSGTPRAKEKAQALL+ FR+QRHG+AGRG
Sbjct: 796 VLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGSAGRG 838

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463969|ref|XP_004149702.1| PREDICTED: U-box domain-containing protein 4-like [Cucumis sativus] gi|449524872|ref|XP_004169445.1| PREDICTED: U-box domain-containing protein 4-like [Cucumis sativus]

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/701 (69%), Positives = 563/701 (80%), Gaps = 17/701 (2%)

Query: 4   EQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKA 63
           E+ SS+IK+AIR+QVDG+APSS++LVK+A+SLSLRSNQ ILIEAVALEKLKE+AEQAE  
Sbjct: 143 EEISSVIKDAIRNQVDGIAPSSDVLVKLADSLSLRSNQAILIEAVALEKLKESAEQAENT 202

Query: 64  GEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYE 123
           GEAE +DQMI LVTRMH+RL+MIKQSQ  SPV IP DFCCPLSLELMTDPVIVASGQTYE
Sbjct: 203 GEAEDIDQMIGLVTRMHERLIMIKQSQSSSPVSIPPDFCCPLSLELMTDPVIVASGQTYE 262

Query: 124 RAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQP 183
           R FIK WID GL VCPKTRQTL HT LIPNYTVKALIANWC+ NNVKL DP+K+ +LNQ 
Sbjct: 263 RVFIKNWIDQGLNVCPKTRQTLVHTNLIPNYTVKALIANWCDTNNVKLSDPSKSVNLNQI 322

Query: 184 SPLFVHADSNAPRDSHIFPHTRGNQQIMPESTRSTNSPAKNLVSLNNT-REGSSPLHPHS 242
           SPL V +         +FPH+ G Q + P+STRS  S  KN  SL  T R+GSS L PHS
Sbjct: 323 SPLLVGSFEPDTHREPLFPHSPGYQPMSPQSTRSAGS-GKNSNSLGGTHRDGSSSLLPHS 381

Query: 243 TSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATIDTS 302
            SE S S  AG+   +++ R+ L+SSED+ +  EE   + V +PSMS S      +    
Sbjct: 382 LSEDSLSNDAGDEGAIEVDRLLLSSSEDQMAKLEENGCDPVAKPSMSPSRTNVLNSCGED 441

Query: 303 EQSSHIHNRTASASSVLSNLNLSQG---DANETSELSNH-----SDASGEGKLESQPA-- 352
           E S   +  ++++S V SN N S+G   +ANE + LS +     SDA+GE K E   A  
Sbjct: 442 EPSHSHNRSSSTSSGV-SNANHSRGTSGEANEATHLSTNLTGYGSDAAGESKSEPLAAAT 500

Query: 353 -TTMRREPE--FPSRVME-TRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRK 408
            TT  REPE   P R+ +  R R   +W RPSERF  RI+++S  ETR DLS IE QV+K
Sbjct: 501 PTTNHREPEREHPPRLADHPRPRGNTMWLRPSERFASRIITSSANETRPDLSAIEAQVQK 560

Query: 409 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVT 468
           +VE+LKS+SLDT R ATAELRLLAKHNMDNR+VIA CGAI+ LV +L S ++KIQENAVT
Sbjct: 561 VVEELKSSSLDTLRGATAELRLLAKHNMDNRIVIAQCGAIDYLVGLLLSEDSKIQENAVT 620

Query: 469 ALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSG 528
           ALLNLSINDNNKSAIA ANAIEPLIHVL+TGSPEA+EN+AATLFSLSVIE+NK+KIGRSG
Sbjct: 621 ALLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSG 680

Query: 529 AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKA 588
           AIGPLV+LLGNGTPRGKKDAATALFNLSI+HENKARIVQAGAV+HLV+LMDPAAGMVDKA
Sbjct: 681 AIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKA 740

Query: 589 VAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVL 648
           VAVLANLATIP+GR AIGQE GIPVLVEVVELGSARGKENAAAALLQLCT S+R CSMVL
Sbjct: 741 VAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRHCSMVL 800

Query: 649 QEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 689
           QEGAVPPLVALSQSGT RAKEKAQALLS+FR+QRHGN+GRG
Sbjct: 801 QEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG 841

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28974687|gb|AAO61490.1| arm repeat-containing protein [Nicotiana tabacum]

 Score =  884 bits (2283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/694 (67%), Positives = 544/694 (78%), Gaps = 48/694 (6%)

Query: 1   MEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQA 60
           ++YE  S  I + I+ QV+G+  SS+   K+A+ LSL SNQE+LIE VALEKLKENAEQA
Sbjct: 140 VDYEMISVTITKVIKAQVEGLGTSSDSFAKIADCLSLNSNQELLIELVALEKLKENAEQA 199

Query: 61  EKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQ 120
           EK+   E+++QMI+LV+ MHD  V  KQSQ C+ VPIP DFCCPLSLELMTDPVIVASGQ
Sbjct: 200 EKSEVVEYIEQMITLVSHMHDCFVTTKQSQSCTAVPIPPDFCCPLSLELMTDPVIVASGQ 259

Query: 121 TYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASL 180
           TYERAFI++WIDLGL VCPKTRQTL HT LIPNYTVKALIANWCE+NNVKLPDP K+ SL
Sbjct: 260 TYERAFIRRWIDLGLTVCPKTRQTLGHTNLIPNYTVKALIANWCEINNVKLPDPMKSLSL 319

Query: 181 NQPSPLFVHADSNAPRDSHIFPHTRGNQQIMPESTRSTNSPAKNLVSLN-NTREGSSPLH 239
           NQPS                         + P+ST+S+ SP K+L+S   + RE SSP H
Sbjct: 320 NQPS-------------------------LSPDSTQSSGSPRKSLISSTVSQREESSPSH 354

Query: 240 PHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATI 299
           P S+SE S  G+ GN    D+ R+ +  SEDR ++S E S    G  ++     +FP   
Sbjct: 355 PRSSSEESLPGVGGNILAFDVERMRI-KSEDRMAHSGEISSH--GHSTLVAD-DQFPLG- 409

Query: 300 DTSEQSSHIHNRTASASSVLSNLNLSQ---GDANETSELSNHSDASGEGKLESQPA-TTM 355
                    HNRT SA S LSN N S    GD N+ SE  + S ASG+  L+S+PA + +
Sbjct: 410 ---------HNRTTSAPSTLSNSNFSPVIPGDGNKLSE--DSSVASGDVGLDSKPAASVL 458

Query: 356 RREPEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKS 415
            +EPEFP    E R R+Q+IWRRP+ERF PRIVS++  E RADLS +E QV+KL+E+LKS
Sbjct: 459 PKEPEFP-YTPEMRPRNQLIWRRPTERF-PRIVSSATVERRADLSEVEEQVKKLIEELKS 516

Query: 416 TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI 475
           TSLD QR ATAELRLLAKHNMDNRMVIANCGAI+ LV++LHS + K+QE+AVTALLNLSI
Sbjct: 517 TSLDMQRNATAELRLLAKHNMDNRMVIANCGAISSLVNLLHSKDMKVQEDAVTALLNLSI 576

Query: 476 NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVD 535
           NDNNK AIANA+AIEPLIHVLQTGS EA+EN+AATLFSLSV+E+NK+KIGRSGAI PLVD
Sbjct: 577 NDNNKCAIANADAIEPLIHVLQTGSAEAKENSAATLFSLSVMEENKMKIGRSGAIKPLVD 636

Query: 536 LLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANL 595
           LLGNGTPRGKKDAATALFNLSI HENK+RI+QAGAVK+LV+LMDPA GMVDKAVAVL+NL
Sbjct: 637 LLGNGTPRGKKDAATALFNLSILHENKSRIIQAGAVKYLVELMDPATGMVDKAVAVLSNL 696

Query: 596 ATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPP 655
           ATIP+GR  IGQE GIP+LVEVVELGSARGKENAAAALLQLCTNSSRFC+MVLQEGAVPP
Sbjct: 697 ATIPEGRAEIGQEGGIPLLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPP 756

Query: 656 LVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 689
           LVALSQSGTPRA+EKAQ LLSYFRNQRHGNAGRG
Sbjct: 757 LVALSQSGTPRAREKAQQLLSYFRNQRHGNAGRG 790

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825203|ref|XP_002880484.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297326323|gb|EFH56743.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  884 bits (2283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/699 (65%), Positives = 544/699 (77%), Gaps = 17/699 (2%)

Query: 1   MEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQA 60
           + YE+ SS+I  A+RDQ DGV PS EILVK+ E+  LRSNQEILIEAVALE+ KE AEQ+
Sbjct: 138 LSYEEISSVIDGALRDQRDGVGPSPEILVKIGENTGLRSNQEILIEAVALERQKEMAEQS 197

Query: 61  EKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQ 120
           E   E EF+DQ+I +V RMH+RL++IKQ+Q  S V I +DF CPLSLE+MTDPVIV+SGQ
Sbjct: 198 ENNAEVEFLDQLIVIVNRMHERLLLIKQTQTSS-VAILADFFCPLSLEVMTDPVIVSSGQ 256

Query: 121 TYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASL 180
           TYE+AFIK+WIDLGL VCPKTRQTL HTTLIPNYTVKALIANWCE N+VKLPDP K+ SL
Sbjct: 257 TYEKAFIKRWIDLGLKVCPKTRQTLTHTTLIPNYTVKALIANWCETNDVKLPDPNKSTSL 316

Query: 181 NQPSPLFVHADSNAPRDSHIFPHTRGNQ-QIMPESTRSTNSPAKNLVSLNNTREGSSPLH 239
           N+ SPL    DS     + +  H   N+      S+  T  P+    S    REG+SP  
Sbjct: 317 NELSPLLSCTDSIPSTGADVSAHKVSNKSHDWDASSSETGKPS--FSSRATGREGASPSR 374

Query: 240 PHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATI 299
           P S    S  G++GNG GLD  R SL   EDR ++S E   +  G+ S+S + +    ++
Sbjct: 375 PASALGASSPGVSGNGYGLDARRGSLNDFEDRSNDSREMKTDAPGRSSVSSTTR---GSV 431

Query: 300 DTSEQSSHIHNRTASASSVLSNLNLSQGDANETSELSNH-----SDASGE---GKLESQP 351
           +  + S + H+R+ SA+S +SN    + DANE SE S H     SDASGE   G L +  
Sbjct: 432 ENGQTSENHHHRSPSATSTVSNEEFPRADANENSEESAHATPYSSDASGEIRSGPLAATT 491

Query: 352 ATTMRRE-PEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLV 410
           +   RR+  +F  + M+ RSR Q  WRRPSER   RIVS    ETR DLS +ETQV+KLV
Sbjct: 492 SAATRRDLSDFSPKFMDRRSRGQ-FWRRPSERLGSRIVSAPSNETRRDLSEVETQVKKLV 550

Query: 411 EDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTAL 470
           E+LKS+SLDTQR+ATAELRLLAKHNMDNR+VI N GAI +LV++L+SS++  QENAVTAL
Sbjct: 551 EELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSSDSATQENAVTAL 610

Query: 471 LNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAI 530
           LNLSINDNNK+AIA+A AIEPLI+VL+ GS EA+EN+AATLFSLSVIE+NKIKIG+SGAI
Sbjct: 611 LNLSINDNNKTAIADAGAIEPLIYVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGAI 670

Query: 531 GPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVA 590
           GPLVDLLGNGTPRGKKDAATALFNLSI+ ENKA IVQ+GAV++L+DLMDPAAGMVDKAVA
Sbjct: 671 GPLVDLLGNGTPRGKKDAATALFNLSIHQENKATIVQSGAVRYLIDLMDPAAGMVDKAVA 730

Query: 591 VLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQE 650
           VLANLATIP+GR AIGQE GIP+LVEVVELGSARGKENAAAALLQL TNS RFC+MVLQE
Sbjct: 731 VLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQE 790

Query: 651 GAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 689
           GAVPPLVALSQSGTPRA+EKAQALLSYFRNQRHGNAGRG
Sbjct: 791 GAVPPLVALSQSGTPRAREKAQALLSYFRNQRHGNAGRG 829

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254516|ref|NP_179895.6| RING/U-box domain and ARM repeat-containing protein [Arabidopsis thaliana] gi|330252323|gb|AEC07417.1| RING/U-box domain and ARM repeat-containing protein [Arabidopsis thaliana]

 Score =  880 bits (2274), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/699 (65%), Positives = 542/699 (77%), Gaps = 17/699 (2%)

Query: 1   MEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQA 60
           + YE+ SS+I  A+RDQ DGV PS EILVK+ E+  LRSNQEILIEAVALE+ KE AEQ+
Sbjct: 138 LSYEEISSVIDGALRDQRDGVGPSPEILVKIGENTGLRSNQEILIEAVALERQKEMAEQS 197

Query: 61  EKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQ 120
           E   E EF+DQ+I +V RMH+RL++IKQ+Q  S V I +DF CPLSLE+MTDPVIV+SGQ
Sbjct: 198 ENNAEVEFLDQLIVIVNRMHERLLLIKQTQTSS-VAILADFFCPLSLEVMTDPVIVSSGQ 256

Query: 121 TYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASL 180
           TYE+AFIK+WIDLGL VCPKTRQTL HTTLIPNYTVKALIANWCE N+VKLPDP K+ SL
Sbjct: 257 TYEKAFIKRWIDLGLKVCPKTRQTLTHTTLIPNYTVKALIANWCETNDVKLPDPNKSTSL 316

Query: 181 NQPSPLFVHADSNAPRDSHIFPHTRGNQ-QIMPESTRSTNSPAKNLVSLNNTREGSSPLH 239
           N+ SPL    DS     + +      N+      S+  T  P+    S    REG+SP  
Sbjct: 317 NELSPLLSCTDSIPSTGADVSARKVSNKSHDWDASSSETGKPS--FSSRATEREGASPSR 374

Query: 240 PHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATI 299
           P S    S  GI+GNG GLD  R SL   EDR ++S E   +  G+ S+S + +    ++
Sbjct: 375 PASALGASSPGISGNGYGLDARRGSLNDFEDRSNDSRELRTDAPGRSSVSSTTR---GSV 431

Query: 300 DTSEQSSHIHNRTASASSVLSNLNLSQGDANETSELSNH-----SDASGE---GKLESQP 351
           +  + S + H+R+ SA+S +SN    + DANE SE S H     SDASGE   G L +  
Sbjct: 432 ENGQTSENHHHRSPSATSTVSNEEFPRADANENSEESAHATPYSSDASGEIRSGPLAATT 491

Query: 352 ATTMRRE-PEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLV 410
           +   RR+  +F  + M+ R+R Q  WRRPSER   RIVS    ETR DLS +ETQV+KLV
Sbjct: 492 SAATRRDLSDFSPKFMDRRTRGQ-FWRRPSERLGSRIVSAPSNETRRDLSEVETQVKKLV 550

Query: 411 EDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTAL 470
           E+LKS+SLDTQR+ATAELRLLAKHNMDNR+VI N GAI +LV++L+S+++  QENAVTAL
Sbjct: 551 EELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTAL 610

Query: 471 LNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAI 530
           LNLSINDNNK AIA+A AIEPLIHVL+ GS EA+EN+AATLFSLSVIE+NKIKIG+SGAI
Sbjct: 611 LNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGAI 670

Query: 531 GPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVA 590
           GPLVDLLGNGTPRGKKDAATALFNLSI+ ENKA IVQ+GAV++L+DLMDPAAGMVDKAVA
Sbjct: 671 GPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMVDKAVA 730

Query: 591 VLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQE 650
           VLANLATIP+GR AIGQE GIP+LVEVVELGSARGKENAAAALLQL TNS RFC+MVLQE
Sbjct: 731 VLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQE 790

Query: 651 GAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 689
           GAVPPLVALSQSGTPRA+EKAQALLSYFRNQRHGNAGRG
Sbjct: 791 GAVPPLVALSQSGTPRAREKAQALLSYFRNQRHGNAGRG 829

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184386|ref|NP_001189583.1| RING/U-box domain and ARM repeat-containing protein [Arabidopsis thaliana] gi|357529165|sp|O22193.3|PUB4_ARATH RecName: Full=U-box domain-containing protein 4; AltName: Full=Plant U-box protein 4 gi|330252324|gb|AEC07418.1| RING/U-box domain and ARM repeat-containing protein [Arabidopsis thaliana]

 Score =  879 bits (2272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/699 (65%), Positives = 542/699 (77%), Gaps = 17/699 (2%)

Query: 1   MEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQA 60
           + YE+ SS+I  A+RDQ DGV PS EILVK+ E+  LRSNQEILIEAVALE+ KE AEQ+
Sbjct: 135 LSYEEISSVIDGALRDQRDGVGPSPEILVKIGENTGLRSNQEILIEAVALERQKEMAEQS 194

Query: 61  EKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQ 120
           E   E EF+DQ+I +V RMH+RL++IKQ+Q  S V I +DF CPLSLE+MTDPVIV+SGQ
Sbjct: 195 ENNAEVEFLDQLIVIVNRMHERLLLIKQTQTSS-VAILADFFCPLSLEVMTDPVIVSSGQ 253

Query: 121 TYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASL 180
           TYE+AFIK+WIDLGL VCPKTRQTL HTTLIPNYTVKALIANWCE N+VKLPDP K+ SL
Sbjct: 254 TYEKAFIKRWIDLGLKVCPKTRQTLTHTTLIPNYTVKALIANWCETNDVKLPDPNKSTSL 313

Query: 181 NQPSPLFVHADSNAPRDSHIFPHTRGNQ-QIMPESTRSTNSPAKNLVSLNNTREGSSPLH 239
           N+ SPL    DS     + +      N+      S+  T  P+    S    REG+SP  
Sbjct: 314 NELSPLLSCTDSIPSTGADVSARKVSNKSHDWDASSSETGKPS--FSSRATEREGASPSR 371

Query: 240 PHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATI 299
           P S    S  GI+GNG GLD  R SL   EDR ++S E   +  G+ S+S + +    ++
Sbjct: 372 PASALGASSPGISGNGYGLDARRGSLNDFEDRSNDSRELRTDAPGRSSVSSTTR---GSV 428

Query: 300 DTSEQSSHIHNRTASASSVLSNLNLSQGDANETSELSNH-----SDASGE---GKLESQP 351
           +  + S + H+R+ SA+S +SN    + DANE SE S H     SDASGE   G L +  
Sbjct: 429 ENGQTSENHHHRSPSATSTVSNEEFPRADANENSEESAHATPYSSDASGEIRSGPLAATT 488

Query: 352 ATTMRRE-PEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLV 410
           +   RR+  +F  + M+ R+R Q  WRRPSER   RIVS    ETR DLS +ETQV+KLV
Sbjct: 489 SAATRRDLSDFSPKFMDRRTRGQ-FWRRPSERLGSRIVSAPSNETRRDLSEVETQVKKLV 547

Query: 411 EDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTAL 470
           E+LKS+SLDTQR+ATAELRLLAKHNMDNR+VI N GAI +LV++L+S+++  QENAVTAL
Sbjct: 548 EELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTAL 607

Query: 471 LNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAI 530
           LNLSINDNNK AIA+A AIEPLIHVL+ GS EA+EN+AATLFSLSVIE+NKIKIG+SGAI
Sbjct: 608 LNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGAI 667

Query: 531 GPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVA 590
           GPLVDLLGNGTPRGKKDAATALFNLSI+ ENKA IVQ+GAV++L+DLMDPAAGMVDKAVA
Sbjct: 668 GPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMVDKAVA 727

Query: 591 VLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQE 650
           VLANLATIP+GR AIGQE GIP+LVEVVELGSARGKENAAAALLQL TNS RFC+MVLQE
Sbjct: 728 VLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQE 787

Query: 651 GAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 689
           GAVPPLVALSQSGTPRA+EKAQALLSYFRNQRHGNAGRG
Sbjct: 788 GAVPPLVALSQSGTPRAREKAQALLSYFRNQRHGNAGRG 826

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	689
TAIR|locus:2045334	829	PUB4 "plant U-box 4" [Arabidop	0.989	0.822	0.633	8.4e-216
TAIR|locus:2158252	707	AT5G67340 [Arabidopsis thalian	0.518	0.504	0.567	6.2e-157
TAIR|locus:2102455	760	AT3G54790 [Arabidopsis thalian	0.409	0.371	0.614	1.7e-121
UNIPROTKB|Q5VRH9	611	PUB12 "U-box domain-containing	0.387	0.436	0.5	3.8e-91
TAIR|locus:2082682	632	PUB14 "plant U-box 14" [Arabid	0.423	0.462	0.476	5.7e-86
TAIR|locus:2017719	612	AT1G23030 [Arabidopsis thalian	0.412	0.464	0.472	1e-84
UNIPROTKB|Q0IMG9	694	SPL11 "E3 ubiquitin-protein li	0.422	0.419	0.459	7.3e-84
TAIR|locus:2162276	660	PUB15 "Plant U-Box 15" [Arabid	0.393	0.410	0.477	1.9e-83
TAIR|locus:2013990	628	AT1G71020 [Arabidopsis thalian	0.409	0.449	0.477	7.4e-82
TAIR|locus:2096687	355	AT3G01400 [Arabidopsis thalian	0.409	0.794	0.484	1e-61

TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 2085 (739.0 bits), Expect = 8.4e-216, P = 8.4e-216
 Identities = 443/699 (63%), Positives = 523/699 (74%)

Query:     1 MEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQA 60
             + YE+ SS+I  A+RDQ DGV PS EILVK+ E+  LRSNQEILIEAVALE+ KE AEQ+
Sbjct:   138 LSYEEISSVIDGALRDQRDGVGPSPEILVKIGENTGLRSNQEILIEAVALERQKEMAEQS 197

Query:    61 EKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQ 120
             E   E EF+DQ+I +V RMH+RL++IKQ+Q  S V I +DF CPLSLE+MTDPVIV+SGQ
Sbjct:   198 ENNAEVEFLDQLIVIVNRMHERLLLIKQTQTSS-VAILADFFCPLSLEVMTDPVIVSSGQ 256

Query:   121 TYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASL 180
             TYE+AFIK+WIDLGL VCPKTRQTL HTTLIPNYTVKALIANWCE N+VKLPDP K+ SL
Sbjct:   257 TYEKAFIKRWIDLGLKVCPKTRQTLTHTTLIPNYTVKALIANWCETNDVKLPDPNKSTSL 316

Query:   181 NQPSPLFVHADSNAPRDSHIFPHTRGNQQI-MPESTRSTNSPAKNLVSLNNTREGSSPLH 239
             N+ SPL    DS     + +      N+      S+  T  P+ +  S    REG+SP  
Sbjct:   317 NELSPLLSCTDSIPSTGADVSARKVSNKSHDWDASSSETGKPSFS--SRATEREGASPSR 374

Query:   240 PHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATI 299
             P S    S  GI+GNG GLD  R SL   EDR ++S E   +  G+ S+S + +    ++
Sbjct:   375 PASALGASSPGISGNGYGLDARRGSLNDFEDRSNDSRELRTDAPGRSSVSSTTR---GSV 431

Query:   300 DTSEQSSHIHNRTXXXXXXXXXXXXXQGDANETSELSNH-----SDASGE---GKLESQP 351
             +  + S + H+R+             + DANE SE S H     SDASGE   G L +  
Sbjct:   432 ENGQTSENHHHRSPSATSTVSNEEFPRADANENSEESAHATPYSSDASGEIRSGPLAATT 491

Query:   352 ATTMRRE-PEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLV 410
             +   RR+  +F  + M+ R+R Q  WRRPSER   RIVS    ETR DLS +ETQV+KLV
Sbjct:   492 SAATRRDLSDFSPKFMDRRTRGQ-FWRRPSERLGSRIVSAPSNETRRDLSEVETQVKKLV 550

Query:   411 EDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTAL 470
             E+LKS+SLDTQR+ATAELRLLAKHNMDNR+VI N GAI +LV++L+S+++  QENAVTAL
Sbjct:   551 EELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTAL 610

Query:   471 LNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAI 530
             LNLS               EPLIHVL+ GS EA+EN+AATLFSLSVIE+NKIKIG+SGAI
Sbjct:   611 LNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGAI 670

Query:   531 GPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVA 590
             GPLVDLLGNGTPRGKKDAATALFNLSI+ ENKA IVQ+GAV++L+DLMDPAAGMVDKAVA
Sbjct:   671 GPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMVDKAVA 730

Query:   591 VLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQE 650
             VLANLATIP+GR AIGQE GIP+LVEVVELGSARGKENAAAALLQL TNS RFC+MVLQE
Sbjct:   731 VLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQE 790

Query:   651 GAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 689
             GAVPPLVALSQSGTPRA+EKAQALLSYFRNQRHGNAGRG
Sbjct:   791 GAVPPLVALSQSGTPRAREKAQALLSYFRNQRHGNAGRG 829

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2158252 AT5G67340 [Arabidopsis thaliana (taxid:3702)]

 Score = 968 (345.8 bits), Expect = 6.2e-157, Sum P(2) = 6.2e-157
 Identities = 207/365 (56%), Positives = 265/365 (72%)

Query:   328 DANETSELSNHSDASGEGKLESQPATTMRREPEFPSRVMETRSRSQVIWRRPSERFV--P 385
             DA E  ++ + S AS  G +      T R       R +   +RS   W+ P ER    P
Sbjct:   348 DAEELRQVFSRS-ASAPGIVSEVVCKTKRNNNAAADRSL---TRSNTPWKFPEERHWRHP 403

Query:   386 RIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC 445
              I+  +  ET +  S IET+V+KL++DLKS+SLDTQREATA +R+LA+++ DNR+VIA C
Sbjct:   404 GIIPATVRETGSS-SSIETEVKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARC 462

Query:   446 GAINILVDMLHSSETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGS-PEAR 504
              AI  LV +L+S++ +IQ +AVT LLNLS                PLIHVL+TG   EA+
Sbjct:   463 EAIPSLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYLEEAK 522

Query:   505 ENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR 564
              N+AATLFSLSVIE+ K +IG +GAI PLVDLLG+G+  GKKDAATALFNLSI+HENK +
Sbjct:   523 ANSAATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTK 582

Query:   565 IVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSAR 624
             +++AGAV++LV+LMDPA GMV+KAV VLANLAT+ +G++AIG+E GIPVLVEVVELGSAR
Sbjct:   583 VIEAGAVRYLVELMDPAFGMVEKAVVVLANLATVREGKIAIGEEGGIPVLVEVVELGSAR 642

Query:   625 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHG 684
             GKENA AALLQLCT+S +FC+ V++EG +PPLVAL++SGT R KEKAQ LL YF+  R  
Sbjct:   643 GKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFKAHRQS 702

Query:   685 NAGRG 689
             N  RG
Sbjct:   703 NQRRG 707

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2102455 AT3G54790 [Arabidopsis thaliana (taxid:3702)]

 Score = 820 (293.7 bits), Expect = 1.7e-121, Sum P(3) = 1.7e-121
 Identities = 174/283 (61%), Positives = 215/283 (75%)

Query:   408 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAV 467
             KLVEDLKS S   +  A AE+R L  ++++NR+ I  CGAI  L+ +L+S E   QE+AV
Sbjct:   476 KLVEDLKSGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQEHAV 535

Query:   468 TALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS 527
             TALLNLS               EPL+HVL TG+  A+EN+AA+LFSLSV++ N+ +IG+S
Sbjct:   536 TALLNLSISELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQS 595

Query:   528 GA-IGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVD 586
              A I  LV+LLG GT RGKKDAA+ALFNLSI H+NKARIVQA AVK+LV+L+DP   MVD
Sbjct:   596 NAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDPDLEMVD 655

Query:   587 KAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSM 646
             KAVA+LANL+ + +GR AI +E GIP+LVE V+LGS RGKENAA+ LLQLC NS +FC++
Sbjct:   656 KAVALLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTL 715

Query:   647 VLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 689
             VLQEGA+PPLVALSQSGT RAKEKAQ LLS+FRNQR     +G
Sbjct:   716 VLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQRDARMKKG 758

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 629 (226.5 bits), Expect = 3.8e-91, Sum P(2) = 3.8e-91
 Identities = 134/268 (50%), Positives = 183/268 (68%)

Query:   409 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVT 468
             L+  L+S + D QR A  E+RLLAK N++NR+ IA  GAI +LV++L SS+ + QE+AVT
Sbjct:   328 LMNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVT 387

Query:   469 ALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSG 528
             ALLNLS                 ++ VL+TGS E RENAAATLFSLSV+++NK+ IG +G
Sbjct:   388 ALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAG 447

Query:   529 AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD-LMDPAAGMVDK 587
             AI PL++LL +G+PRGKKDAATA+FNL IY  NK R V+AG V HL++ L+DP  GM+D+
Sbjct:   448 AIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDE 507

Query:   588 AVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMV 647
             A+++L+ LA  P+G++ I +   IP LVEV++ GS R +ENAAA L  LC+  +      
Sbjct:   508 ALSLLSILAGNPEGKIVIARSEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAA 567

Query:   648 LQEGAVPPLVALSQSGTPRAKEKAQALL 675
                G    L  LS++GT RAK KA ++L
Sbjct:   568 KAAGVEDALKELSETGTDRAKRKASSIL 595

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
 Identities = 141/296 (47%), Positives = 187/296 (63%)

Query:   392 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 451
             G  + +D     T V  L+E L + + + QR A  ELRLLAK N+DNR+ IA  GAI +L
Sbjct:   335 GGSSSSDCD--RTFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLL 392

Query:   452 VDMLHSSETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATL 511
             V++L S + + QE++VTALLNLS                 ++ VL+ GS EARENAAATL
Sbjct:   393 VELLSSPDPRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATL 452

Query:   512 FSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAV 571
             FSLSVI++NK+ IG +GAI  L+ LL  GT RGKKDAATA+FNL IY  NK+R V+ G V
Sbjct:   453 FSLSVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIV 512

Query:   572 KHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAA 630
               L  L+ D   GMVD+A+A+LA L+T  +G+ AI +   IPVLVE++  GS R +ENAA
Sbjct:   513 DPLTRLLKDAGGGMVDEALAILAILSTNQEGKTAIAEAESIPVLVEIIRTGSPRNRENAA 572

Query:   631 AALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNA 686
             A L  LC  +    ++  + GA   L  L+++GT RAK KA +LL   + Q  G A
Sbjct:   573 AILWYLCIGNIERLNVAREVGADVALKELTENGTDRAKRKAASLLELIQ-QTEGVA 627

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.0e-84, Sum P(2) = 1.0e-84
 Identities = 135/286 (47%), Positives = 182/286 (63%)

Query:   396 RADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML 455
             R   SG  + +R LV+ L S S + +R A +E+R L+K + DNR++IA  GAI +LV++L
Sbjct:   323 RTKNSGDMSVIRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLL 382

Query:   456 HSSETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLS 515
              S +   QENA+T +LNLS                 ++ VL+ G+ EARENAAATLFSLS
Sbjct:   383 TSEDVATQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLS 442

Query:   516 VIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLV 575
             + ++NKI IG SGAI  LVDLL NGTPRGKKDAATALFNL IYH NK R V+AG V  LV
Sbjct:   443 LADENKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALV 502

Query:   576 DLMDPAAG--MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 633
              ++  +    MVD+A+ +L+ LA   D + AI + N +P L+ +++    R +ENAAA L
Sbjct:   503 KMLSDSTRHRMVDEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQTRNRENAAAIL 562

Query:   634 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 679
             L LC   +     + + GAV PL+ LS++GT R K KA +LL   R
Sbjct:   563 LSLCKRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLR 608

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 589 (212.4 bits), Expect = 7.3e-84, Sum P(2) = 7.3e-84
 Identities = 135/294 (45%), Positives = 182/294 (61%)

Query:   385 PRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN 444
             P+  +     T A  S     +  L+  L S   + QR A AELRLLAK N +NR+ IA 
Sbjct:   348 PKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAE 407

Query:   445 CGAINILVDMLHSSETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEAR 504
              GAI +L+ +L SS+ + QE+AVTALLNLS                 ++HVL+ GS EAR
Sbjct:   408 AGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEAR 467

Query:   505 ENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR 564
             ENAAATLFSLSVI++ K+ IG  GAI  LV LLG G+ RGKKDAA ALFNL IY  NK R
Sbjct:   468 ENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGR 527

Query:   565 IVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSA 623
              ++AG V  ++ L+ +P   ++D+A+A+L+ L++ P+G+ AIG    +PVLVE++  G+ 
Sbjct:   528 AIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTP 587

Query:   624 RGKENAAAALLQLCTNSSRFCSMV-LQE-GAVPPLVALSQSGTPRAKEKAQALL 675
             R +ENAAA +L LC+       +   QE G + PL  L+ +GT R K KA  LL
Sbjct:   588 RNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLL 641

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0048586 "regulation of long-day photoperiodism, flowering" evidence=IMP

TAIR|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 586 (211.3 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
 Identities = 130/272 (47%), Positives = 180/272 (66%)

Query:   405 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 464
             +V  LVE L S+ L+ QR +  ++RLLA+ N +NR++IAN GAI +LV +L   ++ IQE
Sbjct:   380 EVSLLVEALSSSQLEEQRRSVKQMRLLARENPENRVLIANAGAIPLLVQLLSYPDSGIQE 439

Query:   465 NAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 524
             NAVT LLNLS                 +I +L+ G+ EAREN+AA LFSLS++++NK+ I
Sbjct:   440 NAVTTLLNLSIDEVNKKLISNEGAIPNIIEILENGNREARENSAAALFSLSMLDENKVTI 499

Query:   525 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAG 583
             G S  I PLVDLL +GT RGKKDA TALFNLS+   NK R + AG V+ L++L+ D   G
Sbjct:   500 GLSNGIPPLVDLLQHGTLRGKKDALTALFNLSLNSANKGRAIDAGIVQPLLNLLKDKNLG 559

Query:   584 MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRF 643
             M+D+A+++L  LA+ P+GR AIGQ + I  LVE +  G+ + KE A + LL+L +N+S F
Sbjct:   560 MIDEALSILLLLASHPEGRQAIGQLSFIETLVEFIRQGTPKNKECATSVLLELGSNNSSF 619

Query:   644 CSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 675
                 LQ G    LV ++ SGT RA+ KA AL+
Sbjct:   620 ILAALQFGVYEYLVEITTSGTNRAQRKANALI 651

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
 Identities = 136/285 (47%), Positives = 182/285 (63%)

Query:   398 DLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS 457
             DLSG  + +R LV  L S S++ +R A +E+R L+K + DNR++IA  GAI +LV +L S
Sbjct:   335 DLSGDMSAIRALVCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTS 394

Query:   458 S-ETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLSV 516
               +T+ QENAVT +LNLS                 ++ VL+ GS EARENAAATLFSLS+
Sbjct:   395 DGDTETQENAVTCILNLSIYEHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSL 454

Query:   517 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD 576
              ++NKI IG SGAI  LVDLL  G+ RGKKDAATALFNL IY  NK R V+AG VK LV 
Sbjct:   455 ADENKIIIGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVK 514

Query:   577 LMDPAAG--MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 634
             ++  ++   M D+A+ +L+ LA+    + AI + N IP L++ ++    R +ENAAA LL
Sbjct:   515 MLTDSSSERMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILL 574

Query:   635 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 679
              LC   +     + + GAV PL+ LS+ GT RAK KA +LL   R
Sbjct:   575 CLCKRDTEKLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLR 619

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2096687 AT3G01400 [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 138/285 (48%), Positives = 191/285 (67%)

Query:   406 VRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 464
             +  LV  L S+ S+D Q++A  E+RLL+K+  +NR+ IA  GAI  L+ ++ SS+ ++QE
Sbjct:    64 INHLVSHLDSSYSIDEQKQAAMEIRLLSKNKPENRIKIAKAGAIKPLISLISSSDLQLQE 123

Query:   465 NAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 524
               VTA+LNLS               +PL+  L+ G+P A+ENAA  L  LS IE+NK+ I
Sbjct:   124 YGVTAILNLSLCDENKESIASSGAIKPLVRALKMGTPTAKENAACALLRLSQIEENKVAI 183

Query:   525 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAG 583
             GRSGAI  LV+LL  G  R KKDA+TAL++L    ENK R VQ+G +K LV+LM D  + 
Sbjct:   184 GRSGAIPLLVNLLETGGFRAKKDASTALYSLCSAKENKIRAVQSGIMKPLVELMADFGSN 243

Query:   584 MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRF 643
             MVDK+  V++ L ++P+ + AI +E G+PVLVE+VE+G+ R KE A + LLQLC  S  +
Sbjct:   244 MVDKSAFVMSLLMSVPESKPAIVEEGGVPVLVEIVEVGTQRQKEMAVSILLQLCEESVVY 303

Query:   644 CSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH-GNAG 687
              +MV +EGA+PPLVALSQ+GT RAK+KA+AL+   R  R   N G
Sbjct:   304 RTMVAREGAIPPLVALSQAGTSRAKQKAEALIELLRQPRSISNGG 348

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22193	PUB4_ARATH	6, ., 3, ., 2, ., -	0.6580	0.9898	0.8256	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.4__246__AT2G23140.1 annotation not avaliable (829 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	689
smart00504	63	smart00504, Ubox, Modified RING finger domain	1e-25
pfam04564	73	pfam04564, U-box, U-box domain	4e-22
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-18
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-17
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	9e-15
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-14
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	6e-13
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-12
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-10
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	4e-09
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	1e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-07
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	1e-06
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	1e-06
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-06
pfam05804	708	pfam05804, KAP, Kinesin-associated protein (KAP)	4e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-06
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	5e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-04
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	4e-04
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	5e-04
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	0.002
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	0.002
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	0.003

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score = 99.6 bits (249), Expect = 1e-25
 Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKAL 159
           +F CP+SLE+M DPVI+ SGQTYER+ I+KW+       P T Q L H  LIPN  +K+ 
Sbjct: 1   EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLSHGT-DPVTGQPLTHEDLIPNLALKSA 59

Query: 160 IANW 163
           I  W
Sbjct: 60  IQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 90.0 bits (224), Expect = 4e-22
 Identities = 32/71 (45%), Positives = 43/71 (60%)

Query: 97  IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 156
           IP +F  P++LELM DPVI+ SG TY+R+ I++ +       P TR+ L H  LIPN  +
Sbjct: 1   IPDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLEL 60

Query: 157 KALIANWCELN 167
           K  I  W E N
Sbjct: 61  KEKIDAWLEEN 71

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 82.0 bits (203), Expect = 1e-18
 Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 1/111 (0%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 465
           +  LV  L S+  + QREA   L  L+  N DN   +   G +  LV +L S + ++ + 
Sbjct: 9   LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKA 68

Query: 466 AVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLS 515
           A+ AL NL+   ++NK  +  A  +  L+++L + + + ++NA   L +L+
Sbjct: 69  ALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 441 VIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN-NKSAIANANAIEPLIHVLQTG 499
            +   G +  LV +L SS+  +Q  A  AL NLS  +N N  A+  A  +  L+ +L++ 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 500 SPEARENAAATLFSLS-VIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 556
             E  + A   L +L+   EDNK+ +  +G +  LV+LL +     +K+A  AL NL+
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 78.2 bits (193), Expect = 9e-15
 Identities = 73/269 (27%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 419 DTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-ND 477
           D Q E    L  L          +     + +L+ +L  S  + QE AV  L  L+   D
Sbjct: 419 DVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVD 478

Query: 478 NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSL-SVIEDNKIKIGRSGAIGPLVDL 536
            +K AI  A  I PL+ +L+TGS +A+E++A  L++L    ED +  +  +GA+  L+ L
Sbjct: 479 ESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL 538

Query: 537 LGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLA 596
           L NG P+G++ AA  L  L +   + A I Q  A+  L DL +    ++D    VL+ +A
Sbjct: 539 LKNGGPKGQEIAAKTLTKL-VRTADAATISQLTAL-LLGDLPESKVHVLDVLGHVLS-VA 595

Query: 597 TIPDGRVAIGQE-----NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEG 651
           ++ D    + +E     + +  L++++       +E AA+ L  + ++    C  +  + 
Sbjct: 596 SLED----LVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDE 651

Query: 652 AVPPLVALSQSGTPR-AKEKAQALLSYFR 679
            + P + L  + T   A + A+AL +  R
Sbjct: 652 IINPCIKLLTNNTEAVATQSARALAALSR 680

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 69.3 bits (170), Expect = 3e-14
 Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNG 540
           A+  A  +  L+ +L +     +  AA  L +LS    DN   +  +G +  LV LL + 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 541 TPRGKKDAATALFNLSIYHENKARIV-QAGAVKHLVDLMDPAAGMVDK-AVAVLANLAT 597
                K A  AL NL+   E+   IV +AG V  LV+L+D +   + K A   L+NLA+
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 72.4 bits (178), Expect = 6e-13
 Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 15/227 (6%)

Query: 451 LVDMLHSSETKIQ--ENAVTALLNLS-INDNNKSAI-ANANAIEPLIHVLQTGSPEAREN 506
            ++ L +  +  Q  E     LL L+   +  + AI +++ A+  L+ +L++G+  A+ N
Sbjct: 18  CIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVN 77

Query: 507 AAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY----HENK 562
           AAA L  L   ED ++K+   G I PL+ LL +G+   +K AA A++ +S      H   
Sbjct: 78  AAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGS 137

Query: 563 ARIVQAGAVKHLVDLMDPAAGMVDKAV-----AVLANLATIPDGRVAIG-QENGIPVLVE 616
                 G V  L D + P     DK V       L NL    DG  +   +  G+ +LV+
Sbjct: 138 KIFSTEGVVPSLWDQLQP-GNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVK 196

Query: 617 VVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG 663
           ++  G++  + NAA+ L +L        S VL  GAV  L+ L   G
Sbjct: 197 LLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQG 243

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 523 KIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DP 580
            + ++G +  LV LL +     +++AA AL NLS   ++N   +V+AG +  LV L+   
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 581 AAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 638
              +V  A+  L NLA    D ++ + +  G+P LV +++  +   ++NA  AL  L +
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 64.4 bits (157), Expect = 2e-10
 Identities = 82/317 (25%), Positives = 122/317 (38%), Gaps = 57/317 (17%)

Query: 409 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVT 468
           LV+ L++ S   + ++   L  L  H+ D R  + + GA+  L+ +L +   K QE A  
Sbjct: 493 LVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAK 552

Query: 469 ALLNL--------------------------------------SINDNNKSAIANANAIE 490
            L  L                                      S+ D  +   A  +A+ 
Sbjct: 553 TLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALR 612

Query: 491 PLIHVLQTGSPEARENAA---ATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKD 547
            LI +L +   E +E AA   A +FS    +D    +     I P + LL N T      
Sbjct: 613 TLIQLLSSSKEETQEKAASVLADIFSSR--QDLCESLATDEIINPCIKLLTNNTEAVATQ 670

Query: 548 AATALFNL--SIYHENKARIVQAGAVKHLVDL-----MDPAAGMVDKAVAVLANLATIPD 600
           +A AL  L  SI    K       A+K L+ L     ++ A    ++AV  LANL + P+
Sbjct: 671 SARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVA----EQAVCALANLLSDPE 726

Query: 601 GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN---SSRFCSMVLQEGAVPPLV 657
                  E+ I  L  V+  G+  GK NAA AL QL  +          V   G V  LV
Sbjct: 727 VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALV 786

Query: 658 ALSQSGTPRAKEKAQAL 674
            L  S    +   ++AL
Sbjct: 787 DLLNSTDLDSSATSEAL 803

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 60.1 bits (146), Expect = 4e-09
 Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 6/197 (3%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 465
           +R L++ L S+  +TQ +A + L  +     D    +A    IN  + +L ++   +   
Sbjct: 611 LRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQ 670

Query: 466 AVTAL--LNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 523
           +  AL  L+ SI +N K + A  +AI+PLI + ++ S E  E A   L +L    +   +
Sbjct: 671 SARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAE 730

Query: 524 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN----KARIVQAGAVKHLVDLMD 579
                 I PL  +L  GT  GK++AA AL  L  +       K  +   G V  LVDL++
Sbjct: 731 ALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLN 790

Query: 580 PAAGMVDKAVAVLANLA 596
                       L  LA
Sbjct: 791 STDLDSSATSEALEALA 807

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 58.6 bits (142), Expect = 1e-08
 Identities = 71/305 (23%), Positives = 121/305 (39%), Gaps = 65/305 (21%)

Query: 398 DLSGIETQVRKLVEDLKSTSLDTQRE--ATAELRLLAKHNMDNRMVI-ANCGAINILVDM 454
           D  G    V + +E L++ S   Q +   TA L  LAK   + R  I ++  A+ +LV +
Sbjct: 7   DPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSL 66

Query: 455 LHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLF-- 512
           L S     + NA   L  L   ++ +  +     I PL+ +L++GS EA++ AA  ++  
Sbjct: 67  LRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAV 126

Query: 513 SLSVIED---------------------NKIKIGRS------------------------ 527
           S   + D                        K  +                         
Sbjct: 127 SSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATL 186

Query: 528 --GAIGPLVDLLGNGTPRGKKDAATALFNL-SIYHENKARIVQAGAVKHLVDLMDPA--A 582
             G +  LV LL +G    + +AA+ L  L   +  + ++++ AGAVK L+ L+      
Sbjct: 187 EAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEV 246

Query: 583 GMVDKAVAVLANL-ATIPDGRVAIGQENGIPVLV--------EVVELGSARG-KENAAAA 632
            +  +A   L  L +   + + AI    GIP L+        E ++   A+  +ENA  A
Sbjct: 247 SVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGA 306

Query: 633 LLQLC 637
           L  +C
Sbjct: 307 LANIC 311

Length = 2102

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 437 DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 474
           +N+  +   GA+  LV +L S + ++QE A  AL NL+
Sbjct: 3   ENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 52.0 bits (125), Expect = 1e-06
 Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 12/140 (8%)

Query: 447  AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI---ANANAIEPLIHVLQTGSP-E 502
            A+  LV+ML++     Q  A+ AL+ LS  + +K+        NA+E L  +L + S  E
Sbjct: 1274 AVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLE 1333

Query: 503  ARENAA---ATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 559
             +E+AA     LF+ + I         +  I PL+ LL + +   ++    AL  L +  
Sbjct: 1334 LKEDAAELCRVLFTNTRIRSTPAA---ARCIEPLISLLVSESSTAQEAGVCALDRL-LDD 1389

Query: 560  ENKARIVQA-GAVKHLVDLM 578
            E  A +V A GAV  LV L+
Sbjct: 1390 EQLAELVAAHGAVVPLVGLV 1409

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 67/247 (27%), Positives = 110/247 (44%), Gaps = 25/247 (10%)

Query: 428  LRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND----NNKSAI 483
            L  LA+ +  N++ +A  GA++ L   L        E A + LL +  +      ++SA 
Sbjct: 1172 LTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASELLRILFSSPELRRHESAF 1231

Query: 484  ANANAIEPLIHVLQTGSPEARENAAATL---FSLSVIEDNKIKIGRSGAIGPLVDLLGNG 540
                A+  L+ VL+ GS  AR +AA  L   FS   I D+++      A+ PLV++L  G
Sbjct: 1232 G---AVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELA---RQAVQPLVEMLNTG 1285

Query: 541  TPRGKKDAATALFNLSIYHENKARI---VQAGAVKHLVDLMDPAAGMVDKAVA-----VL 592
            +   +  A  AL  LS  + +KA     V+  A+++L  ++   + +  K  A     VL
Sbjct: 1286 SESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVL 1345

Query: 593  ANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGA 652
                 I   R        I  L+ ++   S+  +E    AL +L  +  +   +V   GA
Sbjct: 1346 FTNTRI---RSTPAAARCIEPLISLLVSESSTAQEAGVCALDRL-LDDEQLAELVAAHGA 1401

Query: 653  VPPLVAL 659
            V PLV L
Sbjct: 1402 VVPLVGL 1408

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 80/315 (25%), Positives = 127/315 (40%), Gaps = 49/315 (15%)

Query: 406  VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLHS-SETKI 462
            V+ LVE L + S   Q  A   L  L+  N    + IA+    A+  L  +L S S  ++
Sbjct: 1275 VQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLEL 1334

Query: 463  QENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKI 522
            +E+A      L  N   +S  A A  IEPLI +L + S  A+E     L  L   E    
Sbjct: 1335 KEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAE 1394

Query: 523  KIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN-KARIVQAGAVKHLVDLMDPA 581
             +   GA+ PLV L+        + A +AL  L       K  +V+AG ++ ++D++  A
Sbjct: 1395 LVAAHGAVVPLVGLVVGTNYVLHEAAISALIKLGKDRPPCKLDMVKAGIIERVLDILPEA 1454

Query: 582  AGMVDKAVA----VLANLATIPDGRVAI------------------GQENGIPVLVEVVE 619
               +  A+A    +L N ++I  G+ A                   GQ + +  LV ++E
Sbjct: 1455 PDSLCSAIAELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILE 1514

Query: 620  ----------------------LGS-ARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPL 656
                                  L S ++  +  AA LL        F   +  + AV PL
Sbjct: 1515 KPQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQDITTQNAVVPL 1574

Query: 657  VALSQSGTPRAKEKA 671
            V L+  G    +++A
Sbjct: 1575 VRLAGIGILSLQQRA 1589

Length = 2102

>gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP)

 Score = 49.9 bits (119), Expect = 4e-06
 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 4/151 (2%)

Query: 448 INILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENA 507
           + +LV  L    +++    V+ L  LSI D NK+ +     IE L+ +      +     
Sbjct: 288 VALLVKALDRDNSELLILVVSFLKKLSIFDENKNEMEENGIIEKLLKLFPCQHEDLLNIT 347

Query: 508 AATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ 567
              LF+LS     + K+   G +  LV LL N    G   A   L++LS   + K+    
Sbjct: 348 LRLLFNLSFDTGLRPKMVNGGLLPKLVSLLDNDNHHGI--ALCVLYHLSCDDKAKSMFAY 405

Query: 568 AGAVKHLVDLMDPAAGM-VDKA-VAVLANLA 596
              +  L+ ++    G  VD   +A+  NLA
Sbjct: 406 TDCIPMLMKMVLEGTGERVDLELIALCINLA 436

This family consists of several eukaryotic kinesin-associated (KAP) proteins. Kinesins are intracellular multimeric transport motor proteins that move cellular cargo on microtubule tracks. It has been shown that the sea urchin KRP85/95 holoenzyme associates with a KAP115 non-motor protein, forming a heterotrimeric complex in vitro, called the Kinesin-II. Length = 708

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 43.6 bits (104), Expect = 5e-06
 Identities = 12/40 (30%), Positives = 24/40 (60%)

Query: 435 NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 474
           + +N+  + + G +  LV++L S + ++ + A  AL NLS
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 97  IPSDFCCPLSLELMTD----PVIVASGQTYERAFIKKWIDLGL-FVCP 139
             S F CP+S E+MTD    PV++  G  Y R  ++K    G  F CP
Sbjct: 7   FHSIFVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCP 54

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 40.1 bits (95), Expect = 7e-05
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 476 NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLS 515
           +  NK A+  A A+ PL+ +L +   E +E AA  L +L+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 604 AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG 663
           A+ Q  G+P LV ++       +  AA AL  L   ++     V++ G +P LV L +S 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 664 TPR 666
              
Sbjct: 62  DEE 64

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 518 EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 556
            +NK  +  +GA+ PLV LL +     +++AA AL NL+
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 43.6 bits (103), Expect = 4e-04
 Identities = 75/306 (24%), Positives = 127/306 (41%), Gaps = 53/306 (17%)

Query: 400 SGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVD------ 453
           +G   Q+ KL+      S+  + EA   L  L+  + + +  IA+ G I  L++      
Sbjct: 230 AGAVKQLLKLLGQGNEVSV--RAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPS 287

Query: 454 ---MLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAAT 510
              M       +QENA+ AL N+       SA+     I  L  + +  SP +    A T
Sbjct: 288 KEFMQGEFAQALQENAMGALANIC---GGMSAL-----ILYLGELSE--SPRSPAPIADT 337

Query: 511 L----FSLSVIEDNKIKIGRSGAIGP------LVDLLGNGTPRGKKD----AATALFN-- 554
           L    ++L V +        + A  P      LV LL     +  ++    A  +L+   
Sbjct: 338 LGALAYALMVFDS---SAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNA 394

Query: 555 -LSIYHENKARIVQAGAVKHLVDLMDPA-AGMVDKAVAVLANLATIPDGR---VAIGQEN 609
            LS    +      A A K LV L+  A A + ++ +  L++L           A+G   
Sbjct: 395 YLSRKLNH------AEAKKVLVGLITMATADVQEELIRALSSLCC--GKGGLWEALGGRE 446

Query: 610 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKE 669
           G+ +L+ ++ L S + +E A A L  L          +   G +PPLV L ++G+ +AKE
Sbjct: 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKE 506

Query: 670 KAQALL 675
            +  +L
Sbjct: 507 DSATVL 512

Length = 2102

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 43.0 bits (101), Expect = 5e-04
 Identities = 63/283 (22%), Positives = 116/283 (40%), Gaps = 26/283 (9%)

Query: 406 VRKLVEDLKSTSLDT-QREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 464
           V + VE +     D  Q EA   L  +A        V+ + GA+ + + +L S+E  ++E
Sbjct: 116 VPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVRE 175

Query: 465 NAVTALLNLSINDNN-KSAIANANAIEPLIHVLQTGSPEAR--ENAAATLFSL------- 514
            AV AL N++ +    +  +    A+EPL+ +L + +       NA  TL +L       
Sbjct: 176 QAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235

Query: 515 ---SVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS-IYHENKARIVQAGA 570
              S I         S A+  L  L+ +  P    DA  A+  LS   +E    ++  G 
Sbjct: 236 PDWSNI---------SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGI 286

Query: 571 VKHLVD-LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENG-IPVLVEVVELGSARGKEN 628
              LV+ L   +A +   A+  + N+ T  D +  +    G +     ++       ++ 
Sbjct: 287 PGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKE 346

Query: 629 AAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKA 671
           A   +  +   ++     V+    +PPL+ L  S   + K++A
Sbjct: 347 ACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEA 389

Length = 526

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 476 NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLS 515
           +D NK A+ +A  +  L+ +L++   E  + AA  L +LS
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 6/145 (4%)

Query: 441 VIANCGAINILVDMLHSSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTG 499
            + + G    LV++L     KIQ  A+ ++ N+ + +D+    I N  A++    +L + 
Sbjct: 280 AVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP 339

Query: 500 SPEARENAAATLFSLSVIEDNKIK-IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 558
               R+ A  T+ +++     +I+ +  +  I PL+ LL +   + KK+A  A+ N +  
Sbjct: 340 KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399

Query: 559 HENKARI----VQAGAVKHLVDLMD 579
             N+  I    V  G +K L DL+D
Sbjct: 400 GLNRPDIIRYLVSQGFIKPLCDLLD 424

Length = 526

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 7/113 (6%)

Query: 488  AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKD 547
            AIEPLI +L++ S   ++ AA  L  L   E  +  I    A+ PLV L G G    ++ 
Sbjct: 1529 AIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQDITTQNAVVPLVRLAGIGILSLQQR 1588

Query: 548  AATALFNLSIYHENKARIVQAGAVKHLVDLM---DPAA--GMVDKAVAVLANL 595
            A  AL ++S+       +  AG +  L  ++   DP     + + A +VL+N+
Sbjct: 1589 AVKALESISLSWPKA--VADAGGIFELSKVILQADPQPPHALWESAASVLSNI 1639

Length = 2102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	689
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.94
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.94
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.93
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.92
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.92
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.9
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.89
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.87
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.84
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.76
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.72
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.71
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.69
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.68
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.65
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.58
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.53
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.46
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.43
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.42
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.42
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.4
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	99.31
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	99.24
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.23
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.16
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.15
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.13
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.11
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.11
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.08
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.08
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.07
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.04
PRK09687	280	putative lyase; Provisional	99.03
PRK09687	280	putative lyase; Provisional	98.95
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	98.94
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	98.93
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.9
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.86
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.82
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.77
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.75
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.72
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.61
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.61
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.59
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.59
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.58
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.58
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.56
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.53
PHA02929	238	N1R/p28-like protein; Provisional	98.52
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.51
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.51
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.48
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.47
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.46
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.45
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.45
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.44
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.43
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.32
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.31
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.29
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.27
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.26
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.23
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.2
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.14
KOG0289	506	consensus mRNA splicing factor [General function p	98.1
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.09
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.08
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.07
PHA02926	242	zinc finger-like protein; Provisional	98.02
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.01
PTZ00429	746	beta-adaptin; Provisional	98.0
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.99
COG5222	427	Uncharacterized conserved protein, contains RING Z	97.95
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.95
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.93
TIGR02270	410	conserved hypothetical protein. Members are found	97.92
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.88
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.87
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.86
PF14634	44	zf-RING_5: zinc-RING finger domain	97.86
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.85
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.84
PF05536	543	Neurochondrin: Neurochondrin	97.84
PTZ00429	746	beta-adaptin; Provisional	97.83
PF05536	543	Neurochondrin: Neurochondrin	97.83
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.81
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.81
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.8
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.79
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.7
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.69
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.65
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.6
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.6
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.6
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.58
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.57
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.55
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.55
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.54
KOG2660	331	consensus Locus-specific chromosome binding protei	97.5
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.5
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.49
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.41
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.38
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.37
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.3
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.3
TIGR02270	410	conserved hypothetical protein. Members are found	97.25
COG5369	743	Uncharacterized conserved protein [Function unknow	97.25
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.21
COG5369	743	Uncharacterized conserved protein [Function unknow	97.17
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.15
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.11
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.08
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.08
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.07
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.99
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.92
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.87
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	96.79
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.77
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.71
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.71
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.67
PF04641	260	Rtf2: Rtf2 RING-finger	96.65
KOG1242	569	consensus Protein containing adaptin N-terminal re	96.63
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	96.48
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	96.48
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.47
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.46
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	96.44
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.41
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.41
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	96.4
KOG1824	1233	consensus TATA-binding protein-interacting protein	96.38
KOG2979	262	consensus Protein involved in DNA repair [General	96.37
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	96.3
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.29
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.26
KOG3039	303	consensus Uncharacterized conserved protein [Funct	96.24
KOG3036	293	consensus Protein involved in cell differentiation	96.23
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.17
COG5152	259	Uncharacterized conserved protein, contains RING a	96.16
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.12
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.08
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.06
KOG1824	1233	consensus TATA-binding protein-interacting protein	96.04
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.02
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.96
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	95.91
KOG4367	699	consensus Predicted Zn-finger protein [Function un	95.79
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.79
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.77
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	95.76
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.76
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.72
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	95.72
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	95.66
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.64
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	95.63
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	95.63
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.61
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	95.55
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	95.45
PF05004	309	IFRD: Interferon-related developmental regulator (	95.43
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	95.42
KOG3036	293	consensus Protein involved in cell differentiation	95.4
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.33
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.33
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.32
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.29
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	94.94
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	94.89
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	94.88
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	94.87
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.85
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	94.71
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	94.68
PF05004	309	IFRD: Interferon-related developmental regulator (	94.49
KOG3113	293	consensus Uncharacterized conserved protein [Funct	94.4
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.38
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	94.33
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	94.29
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	94.21
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	94.19
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.13
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	94.11
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	93.96
PF07814	361	WAPL: Wings apart-like protein regulation of heter	93.75
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	93.72
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	93.68
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	93.68
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	93.65
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	93.58
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.54
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	93.51
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	93.46
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	93.4
COG5109	396	Uncharacterized conserved protein, contains RING Z	93.37
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	93.36
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	93.35
PF08045	257	CDC14: Cell division control protein 14, SIN compo	93.32
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	93.12
KOG0567	289	consensus HEAT repeat-containing protein [General	93.05
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.97
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	92.92
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	92.86
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	92.8
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	92.58
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	92.32
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	92.16
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	91.89
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	91.87
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	91.61
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	91.6
KOG0825	1134	consensus PHD Zn-finger protein [General function	91.59
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	91.47
KOG1001	674	consensus Helicase-like transcription factor HLTF/	91.36
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	91.25
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	91.21
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	91.12
KOG4653	982	consensus Uncharacterized conserved protein [Funct	91.07
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	91.04
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	90.98
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	90.74
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	90.66
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	90.64
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	90.62
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	90.56
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	90.34
PF08045	257	CDC14: Cell division control protein 14, SIN compo	90.11
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	90.07
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	90.05
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	89.77
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	89.7
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	89.55
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	89.27
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	89.26
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	89.25
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	88.41
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	88.37
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	88.2
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	88.16
KOG2025	892	consensus Chromosome condensation complex Condensi	88.01
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	87.7
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	87.69
KOG4653	982	consensus Uncharacterized conserved protein [Funct	87.53
KOG0567	289	consensus HEAT repeat-containing protein [General	87.51
COG5175	480	MOT2 Transcriptional repressor [Transcription]	87.16
COG5627	275	MMS21 DNA repair protein MMS21 [DNA replication, r	87.15
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	86.75
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	86.09
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	86.0
KOG2032	533	consensus Uncharacterized conserved protein [Funct	85.77
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	85.42
KOG0301	745	consensus Phospholipase A2-activating protein (con	85.15
COG5219	1525	Uncharacterized conserved protein, contains RING Z	85.13
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	85.08
KOG0301	745	consensus Phospholipase A2-activating protein (con	84.89
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	84.88
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	84.78
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	83.81
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	83.79
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	83.63
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	83.38
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	83.32
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	83.18
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	83.01
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	82.61
KOG2062	929	consensus 26S proteasome regulatory complex, subun	82.58
KOG2062	929	consensus 26S proteasome regulatory complex, subun	82.38
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	82.22
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	82.19
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	82.19
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	82.18
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	81.5
KOG0396	389	consensus Uncharacterized conserved protein [Funct	81.3
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	81.21
PF06416	113	DUF1076: Protein of unknown function (DUF1076); In	81.14
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	81.07
PF04641	260	Rtf2: Rtf2 RING-finger	80.9
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	80.78
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	80.56
KOG0414	1251	consensus Chromosome condensation complex Condensi	80.3

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.94  E-value=5.4e-25  Score=270.84  Aligned_cols=280  Identities=24%  Similarity=0.292  Sum_probs=250.4

Q ss_pred             hhhHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccCcccHHHHHh-cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 005598          402 IETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHSSETKIQENAVTALLNLSINDN  478 (689)
Q Consensus       402 ~~~~V~~Lv~~L~s~--~~~~q~~Al~~L~~La~~s~~nr~~i~~-~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~  478 (689)
                      ....+..|++.|+++  +++.|..|+..|+.|++.++++|..+.+ .|+||.|+.+|.+.+..++++|+.+|.+|+.+++
T Consensus        11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~   90 (2102)
T PLN03200         11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED   90 (2102)
T ss_pred             hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence            357889999999976  7889999999999999999999999997 6999999999999999999999999999999999


Q ss_pred             cHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccC---chhHHHH-HhhCChHHHHHhhcCCC---HHHHHHHHHH
Q 005598          479 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI---EDNKIKI-GRSGAIGPLVDLLGNGT---PRGKKDAATA  551 (689)
Q Consensus       479 ~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~---~~~k~~I-~~~g~I~~Lv~LL~~~~---~~v~~~Al~a  551 (689)
                      ++..|+..|++++|+.+|++++.+.+++|+++|++|+..   +.++..| +..|+++.|+++|++++   ..++..++.+
T Consensus        91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A  170 (2102)
T PLN03200         91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA  170 (2102)
T ss_pred             HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999986   4456554 45799999999999874   2355677899


Q ss_pred             HHhhhhchHHHHH-HHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC-chhHHHHHhcCcHHHHHHHhccC-CHHHHH
Q 005598          552 LFNLSIYHENKAR-IVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELG-SARGKE  627 (689)
Q Consensus       552 L~nLs~~~~n~~~-lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~-~e~r~~i~~~g~v~~Lv~lL~s~-s~~~~e  627 (689)
                      |+||+.+.+++.. ++++|+|+.|+.+| +.+..++..|+.+|.+++.+ ++++..+++.|+|+.|+++|.++ ++.+++
T Consensus       171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE  250 (2102)
T PLN03200        171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRA  250 (2102)
T ss_pred             HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHH
Confidence            9999999998865 58999999999999 56778889999999998875 67899999999999999999875 569999


Q ss_pred             HHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCC---------HHHHHHHHHHHHHhhcC
Q 005598          628 NAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT---------PRAKEKAQALLSYFRNQ  681 (689)
Q Consensus       628 ~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~---------~~vr~~A~~lL~~L~~~  681 (689)
                      +|+++|.+||.++.+++..+++.|+++.|+.++...+         ...++.|.|+|.+|.+.
T Consensus       251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg  313 (2102)
T PLN03200        251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG  313 (2102)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999998654         34589999999998763

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.6e-25  Score=242.88  Aligned_cols=279  Identities=23%  Similarity=0.289  Sum_probs=251.4

Q ss_pred             hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccH
Q 005598          403 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK  480 (689)
Q Consensus       403 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k  480 (689)
                      .+.|+.+|+.|. ..++..|..|+++|.++|.++.+....++++|++|.|+.+|.+++..++++|+|+|+|++.+ +..|
T Consensus       108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R  187 (514)
T KOG0166|consen  108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR  187 (514)
T ss_pred             cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH
Confidence            489999999997 55699999999999999999999999999999999999999999999999999999999866 6789


Q ss_pred             HHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHhcccCchhHHHHHh-hCChHHHHHhhcCCCHHHHHHHHHHHHhhhh-
Q 005598          481 SAIANANAIEPLIHVLQTGSP-EARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSI-  557 (689)
Q Consensus       481 ~~i~~~g~l~~Lv~lL~s~~~-~~~~~Aa~aL~nLs~~~~~k~~I~~-~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-  557 (689)
                      ..+.+.|++++|+.++...+. ....+++|+|.||+...+....+.. ..+++.|..+|.+.+..+...|+|||.+|+. 
T Consensus       188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg  267 (514)
T KOG0166|consen  188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG  267 (514)
T ss_pred             HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999987764 7889999999999987655444443 4789999999999999999999999999997 


Q ss_pred             chHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchh-HHHHHhcCcHHHHHHHhc-cCCHHHHHHHHHHHH
Q 005598          558 YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVE-LGSARGKENAAAALL  634 (689)
Q Consensus       558 ~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~-r~~i~~~g~v~~Lv~lL~-s~s~~~~e~Av~aL~  634 (689)
                      .++..+.+++.|+++.|+++| +.+..++..|+.++.|++...+. .+.+++.|+++.|..+|. +.....+..|+++|.
T Consensus       268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS  347 (514)
T KOG0166|consen  268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS  347 (514)
T ss_pred             ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence            456677788999999999999 67778889999999999986555 677889999999999998 456668999999999


Q ss_pred             HHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 005598          635 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ  681 (689)
Q Consensus       635 ~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~  681 (689)
                      |++.++.++.+.++..|.+|.|+.+++.+.-++|+.|+|++.++...
T Consensus       348 NItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~  394 (514)
T KOG0166|consen  348 NITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS  394 (514)
T ss_pred             HhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999999999987643

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.93  E-value=4.6e-24  Score=262.69  Aligned_cols=279  Identities=23%  Similarity=0.322  Sum_probs=245.6

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH-
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS-  481 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~-  481 (689)
                      .+.++.|+++|++++...|..|++.|++++..+++++..+.+.|+||.|+.+|.+++.+++++|+|+|.||+.+..+.. 
T Consensus       445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~  524 (2102)
T PLN03200        445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA  524 (2102)
T ss_pred             cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4578999999999999999999999999999888999999999999999999999999999999999999998765544 


Q ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhH-------------------------------------HH-
Q 005598          482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-------------------------------------IK-  523 (689)
Q Consensus       482 ~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k-------------------------------------~~-  523 (689)
                      .+.+.|++++|+++|++++.+.+..|+++|++|+...+..                                     .. 
T Consensus       525 iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g  604 (2102)
T PLN03200        525 CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG  604 (2102)
T ss_pred             HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence            4557899999999999999999999999999996322110                                     01 


Q ss_pred             HHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc-hHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC--Cc
Q 005598          524 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT--IP  599 (689)
Q Consensus       524 I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~--~~  599 (689)
                      ....|+++.|+++|++++..+++.|+++|.+++.. ++++..++..|+++.|+.+| ..+.++...|+++|.+|+.  ..
T Consensus       605 ~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~  684 (2102)
T PLN03200        605 SAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE  684 (2102)
T ss_pred             hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH
Confidence            11348999999999999999999999999999984 46678899999999999999 5677888999999999996  33


Q ss_pred             hhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 005598          600 DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR  679 (689)
Q Consensus       600 e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~  679 (689)
                      ..+..+++.|+++.|+++|...+..+++.|+.+|.+++...+ .+..+...|+++.|+.++++|+++.|+.|+++|..|.
T Consensus       685 ~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~  763 (2102)
T PLN03200        685 NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLL  763 (2102)
T ss_pred             HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            446678899999999999999999999999999999999887 6677778999999999999999999999999887776


Q ss_pred             cCc
Q 005598          680 NQR  682 (689)
Q Consensus       680 ~~~  682 (689)
                      ++.
T Consensus       764 ~~~  766 (2102)
T PLN03200        764 KHF  766 (2102)
T ss_pred             hCC
Confidence            554

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.9e-24  Score=221.63  Aligned_cols=280  Identities=24%  Similarity=0.361  Sum_probs=257.6

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI  483 (689)
Q Consensus       404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i  483 (689)
                      ..+..|+..+.+...++|..++.+|.+|+.. ..+|..++..|++..|.++-++.+..+|.++..+|.|+....++|..+
T Consensus       126 ~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~L  204 (550)
T KOG4224|consen  126 LGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVL  204 (550)
T ss_pred             cChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhh
Confidence            3456666667677778999999999999986 589999999999999999888899999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhC--ChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHH
Q 005598          484 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSG--AIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN  561 (689)
Q Consensus       484 ~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g--~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n  561 (689)
                      +.+|++|.|+.+|++++.++++++..+|.+++.+...|..+++.+  .++.||+++++++++++..|..||.||+...+-
T Consensus       205 V~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y  284 (550)
T KOG4224|consen  205 VHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY  284 (550)
T ss_pred             hccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh
Confidence            999999999999999999999999999999999999999999886  999999999999999999999999999999999


Q ss_pred             HHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccC-CHHHHHHHHHHHHHHhhC
Q 005598          562 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG-SARGKENAAAALLQLCTN  639 (689)
Q Consensus       562 ~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~-s~~~~e~Av~aL~~L~~~  639 (689)
                      +..++++|.+|.++++| ++..+..-..+.++.||+.++-+...|+++|++.+||.+|..+ +++.+-+|+.+|++|+..
T Consensus       285 q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas  364 (550)
T KOG4224|consen  285 QREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS  364 (550)
T ss_pred             hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence            99999999999999999 5667778888999999999999999999999999999999876 567999999999999999


Q ss_pred             CHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCcCC
Q 005598          640 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHG  684 (689)
Q Consensus       640 ~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~~~  684 (689)
                      ++.++..+.+.|++++|..|+..+.-.++.....++..|.=....
T Consensus       365 se~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~  409 (550)
T KOG4224|consen  365 SEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND  409 (550)
T ss_pred             hhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999988998888888777644433

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=9.9e-24  Score=216.43  Aligned_cols=278  Identities=24%  Similarity=0.336  Sum_probs=257.4

Q ss_pred             hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 005598          402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS  481 (689)
Q Consensus       402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~  481 (689)
                      ..+.+..|.++-++.+..+|..+...|.+++. +.+||+.++.+|++|.|+.++.+.+..+|+.++.++.|++.+..+|+
T Consensus       165 ~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk  243 (550)
T KOG4224|consen  165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK  243 (550)
T ss_pred             hccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence            34667778887788899999999999999988 66999999999999999999999999999999999999999999999


Q ss_pred             HHHHcC--CHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhch
Q 005598          482 AIANAN--AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH  559 (689)
Q Consensus       482 ~i~~~g--~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~  559 (689)
                      .+++.+  .++.|+.++.++++.++..|..+|.+|+.+.+++..|++.|.+|.+|++|+++......+.+.++.|++..+
T Consensus       244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp  323 (550)
T KOG4224|consen  244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP  323 (550)
T ss_pred             HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc
Confidence            999987  999999999999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             HHHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005598          560 ENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL  636 (689)
Q Consensus       560 ~n~~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L  636 (689)
                      -|...++++|.+..|+.+|  .++.+++..|..+|+||+. ...++..+.+.|+++.+.+++..+.-.++.....++..|
T Consensus       324 lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L  403 (550)
T KOG4224|consen  324 LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL  403 (550)
T ss_pred             CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence            9999999999999999999  3556789999999999998 566789999999999999999999999999988888888


Q ss_pred             hhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 005598          637 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ  681 (689)
Q Consensus       637 ~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~  681 (689)
                      +.++. .+..+.+.|.++.|+.+..+.+.+++.+|+.+|-+|...
T Consensus       404 al~d~-~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~  447 (550)
T KOG4224|consen  404 ALNDN-DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD  447 (550)
T ss_pred             Hhccc-cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence            87765 678888999999999999999999999999999888754

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=5e-22  Score=217.22  Aligned_cols=281  Identities=23%  Similarity=0.287  Sum_probs=245.5

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCH-HHHHHHHHHHHHhhcCCccHH
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSET-KIQENAVTALLNLSINDNNKS  481 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~-~v~~~Al~aL~nLs~~~~~k~  481 (689)
                      .+.|+.++.++.+++.+++.+|+++|.+++.+++..|..+..+|+++.|+.++...+. .+..++.|+|.|||.+.+...
T Consensus       151 agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P  230 (514)
T KOG0166|consen  151 AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSP  230 (514)
T ss_pred             CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCC
Confidence            3678899999999999999999999999999999999999999999999999988765 678999999999997754333


Q ss_pred             HHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchh-HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhch
Q 005598          482 AIA-NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH  559 (689)
Q Consensus       482 ~i~-~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~-k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~  559 (689)
                      .+. -...++.|.++|.+.+.++...|+|+|.+|+....- -..+.+.|+++.|+++|.+....++..|++++.|++...
T Consensus       231 ~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~  310 (514)
T KOG0166|consen  231 PFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS  310 (514)
T ss_pred             cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc
Confidence            332 346899999999999999999999999999975444 445567899999999999999999999999999998855


Q ss_pred             -HHHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 005598          560 -ENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ  635 (689)
Q Consensus       560 -~n~~~lv~~G~v~~Lv~LL~--~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~  635 (689)
                       ...+.++..|+++.|..+|.  +...++..|+|++.|++. +.+..++++++|.+|.|+.+|.+++.+.+..|++++.|
T Consensus       311 d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN  390 (514)
T KOG0166|consen  311 DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISN  390 (514)
T ss_pred             HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHh
Confidence             45567789999999999993  445588999999999988 55678999999999999999999999999999999999


Q ss_pred             HhhCC-HhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCcC
Q 005598          636 LCTNS-SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH  683 (689)
Q Consensus       636 L~~~~-~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~~  683 (689)
                      ++..+ ++....+++.|+|++|+.+|...+.++...+...|.++-...+
T Consensus       391 ~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e  439 (514)
T KOG0166|consen  391 LTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGE  439 (514)
T ss_pred             hcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHH
Confidence            98875 5777888999999999999988888888888888888766443

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.89  E-value=8.1e-23  Score=208.18  Aligned_cols=281  Identities=22%  Similarity=0.233  Sum_probs=243.8

Q ss_pred             hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccH
Q 005598          403 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK  480 (689)
Q Consensus       403 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k  480 (689)
                      .+.|+.++++|. ....-.|.+|++.|.+++.+.......++++|++|.++++|.+.+.+|+++++|+|+|++-+ +..|
T Consensus       113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R  192 (526)
T COG5064         113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR  192 (526)
T ss_pred             ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence            368899999995 45556788999999999998877777788999999999999999999999999999999866 6678


Q ss_pred             HHHHHcCCHHHHHHHHcCCC--HHHHHHHHHHHHhcccCchhHHHHH-hhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598          481 SAIANANAIEPLIHVLQTGS--PEARENAAATLFSLSVIEDNKIKIG-RSGAIGPLVDLLGNGTPRGKKDAATALFNLSI  557 (689)
Q Consensus       481 ~~i~~~g~l~~Lv~lL~s~~--~~~~~~Aa~aL~nLs~~~~~k~~I~-~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~  557 (689)
                      ..+.+.|++.+++.+|.+..  ..+..++.|+|.||+.-......-. -..+++.|.+|+.+.++++...|+|||..|+.
T Consensus       193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD  272 (526)
T COG5064         193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD  272 (526)
T ss_pred             HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence            89999999999999998764  4788999999999997433221111 12568999999999999999999999999998


Q ss_pred             ch-HHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchh-HHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHH
Q 005598          558 YH-ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALL  634 (689)
Q Consensus       558 ~~-~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~-r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~  634 (689)
                      .+ +..+.+++.|+...|+++| +++..+...|+..++|+....+. .+.+++.|+++.+..+|.+..+.++..||+++.
T Consensus       273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS  352 (526)
T COG5064         273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS  352 (526)
T ss_pred             CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence            55 5567788999999999999 67777889999999999986555 567789999999999999988899999999999


Q ss_pred             HHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCcC
Q 005598          635 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH  683 (689)
Q Consensus       635 ~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~~  683 (689)
                      |+..++.++.+.+++.+.+|+|+.+|..-.-++|+.|.|++.+......
T Consensus       353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~  401 (526)
T COG5064         353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL  401 (526)
T ss_pred             ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            9999999999999999999999999999999999999998887765443

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.87  E-value=7.7e-23  Score=170.46  Aligned_cols=73  Identities=47%  Similarity=0.862  Sum_probs=64.4

Q ss_pred             CCCccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHHHHHHHHcCC
Q 005598           97 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNV  169 (689)
Q Consensus        97 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~  169 (689)
                      ||++|+||||+++|+|||++++||||||.+|++|+..++.+||+|+++++..+|+||..||+.|++|+.+|.+
T Consensus         1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~~   73 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENKK   73 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCTC
T ss_pred             CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHccC
Confidence            6999999999999999999999999999999999999778899999999999999999999999999999864

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.84  E-value=2.8e-20  Score=189.75  Aligned_cols=278  Identities=22%  Similarity=0.247  Sum_probs=240.7

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCC--HHHHHHHHHHHHHhhcCCccH
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE--TKIQENAVTALLNLSINDNNK  480 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~--~~v~~~Al~aL~nLs~~~~~k  480 (689)
                      .+.|+.++.+|.+.+.+++.+++++|.+++.+++..|..+.+.|++..|+.+|.++-  ..+..++.|.|.||+...+..
T Consensus       156 ~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~  235 (526)
T COG5064         156 AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP  235 (526)
T ss_pred             CCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence            368999999999999999999999999999999999999999999999999998754  478899999999999653321


Q ss_pred             H-HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhH-HHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc
Q 005598          481 S-AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY  558 (689)
Q Consensus       481 ~-~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k-~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~  558 (689)
                      . --.-..+++.|.+++.+.++++...|+|+|..|+..+.-+ ..+.+.|+.+.||++|.+++..++.-|++.+.|+...
T Consensus       236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG  315 (526)
T COG5064         236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG  315 (526)
T ss_pred             CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec
Confidence            1 1112346899999999999999999999999998765544 4456779999999999999999999999999999885


Q ss_pred             hH-HHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 005598          559 HE-NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ  635 (689)
Q Consensus       559 ~~-n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~  635 (689)
                      .+ ..+.++..|+++.+..+| ++...+...|+|++.|+.. +.+..+++++.+.+|.|+.+|...+-..+..||+++.|
T Consensus       316 ~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisN  395 (526)
T COG5064         316 SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISN  395 (526)
T ss_pred             CccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            54 456678999999999999 5666888999999999977 56677899999999999999999999999999999999


Q ss_pred             HhhCC---HhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598          636 LCTNS---SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       636 L~~~~---~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~  680 (689)
                      ...++   ++....++..|++.+|+.+|...+.++-+.|..+++++-+
T Consensus       396 atsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk  443 (526)
T COG5064         396 ATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK  443 (526)
T ss_pred             hhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence            98765   5778888999999999999999888888888888777654

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.76  E-value=2.1e-16  Score=181.85  Aligned_cols=278  Identities=19%  Similarity=0.246  Sum_probs=226.5

Q ss_pred             hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 005598          402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS  481 (689)
Q Consensus       402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~  481 (689)
                      ..+.|+.|++.|.+++.+....++..|.+|+.. .+|+..+.+.|+|+.|+.++.+++.+++..++.+|.||+.+++.|.
T Consensus       288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~  366 (708)
T PF05804_consen  288 NKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS  366 (708)
T ss_pred             hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence            467889999999999999999999999999984 5799999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhchH
Q 005598          482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHE  560 (689)
Q Consensus       482 ~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~~  560 (689)
                      .+++.|++|.|+.+|.++  ..+..+..+|.+||.++++|..+...++++.|+++|-.+ ...+...++.++.||+.++.
T Consensus       367 ~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r  444 (708)
T PF05804_consen  367 QMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR  444 (708)
T ss_pred             HHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence            999999999999999865  455679999999999999999998889999999987654 56677778888889999998


Q ss_pred             HHHHHHHhCcHHHHHHhc-C--------------------------------------CChHHHHHHHHHHHHHh-----
Q 005598          561 NKARIVQAGAVKHLVDLM-D--------------------------------------PAAGMVDKAVAVLANLA-----  596 (689)
Q Consensus       561 n~~~lv~~G~v~~Lv~LL-~--------------------------------------~~~~v~e~Al~~L~nLa-----  596 (689)
                      |.+.+++.|+++.|++.. .                                      ++.+..-.++++|+||.     
T Consensus       445 naqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld  524 (708)
T PF05804_consen  445 NAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLD  524 (708)
T ss_pred             HHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcC
Confidence            888888877777766532 1                                      11223334666666663     


Q ss_pred             ---------------------------------------CCchhHHHHHhcCcHHHHHHHhcc--CCHHHHHHHHHHHHH
Q 005598          597 ---------------------------------------TIPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQ  635 (689)
Q Consensus       597 ---------------------------------------~~~e~r~~i~~~g~v~~Lv~lL~s--~s~~~~e~Av~aL~~  635 (689)
                                                             ..+.....+.+.|.++.|+.+|..  .+++..-..+.++++
T Consensus       525 ~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~  604 (708)
T PF05804_consen  525 WAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQ  604 (708)
T ss_pred             HHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence                                                   333344445566777777777754  356666777888888


Q ss_pred             HhhCCHhhHHHHH-hCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCcC
Q 005598          636 LCTNSSRFCSMVL-QEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH  683 (689)
Q Consensus       636 L~~~~~~~~~~lv-~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~~  683 (689)
                      +..+.+ .+..++ +.+++..|+.++++.++.+++.|-.+|..+..+..
T Consensus       605 ll~h~~-tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~  652 (708)
T PF05804_consen  605 LLFHEE-TREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE  652 (708)
T ss_pred             HHcChH-HHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence            888866 445554 47899999999999999999999999988877543

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.72  E-value=1.9e-15  Score=174.09  Aligned_cols=252  Identities=21%  Similarity=0.253  Sum_probs=215.6

Q ss_pred             HHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCC
Q 005598          420 TQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG  499 (689)
Q Consensus       420 ~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~  499 (689)
                      ..+.+...|.+|+. +..+...+.+.|+|+.|+.+|.+.+.+++..++.+|.+|+...+||..+.+.|+++.|++++.++
T Consensus       265 Llrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~  343 (708)
T PF05804_consen  265 LLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE  343 (708)
T ss_pred             HHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC
Confidence            34567778999988 56888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-
Q 005598          500 SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-  578 (689)
Q Consensus       500 ~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-  578 (689)
                      +.+++..++.+|+|||.+++.|..|+..|++|.|+.+|.+++  .+..++.+|++||..++++..+...++++.|++++ 
T Consensus       344 ~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll  421 (708)
T PF05804_consen  344 NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLL  421 (708)
T ss_pred             CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHH
Confidence            999999999999999999999999999999999999998754  44568999999999999999999999999999987 


Q ss_pred             -CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHH
Q 005598          579 -DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLV  657 (689)
Q Consensus       579 -~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~  657 (689)
                       .++..+...+++++.||+.++.+.+.+.+.++++.|++......+.   ....+|.|++.+.+..+..+.  +.+..|+
T Consensus       422 ~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~--~~i~~L~  496 (708)
T PF05804_consen  422 ENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFV--DFIGDLA  496 (708)
T ss_pred             hCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHH--HHHHHHH
Confidence             3455566678999999999999999999999999999987654332   234689999999865555554  4688888


Q ss_pred             HhhhcCC-HHHHHHHHHHHHHhh
Q 005598          658 ALSQSGT-PRAKEKAQALLSYFR  679 (689)
Q Consensus       658 ~LL~~~~-~~vr~~A~~lL~~L~  679 (689)
                      .++..+. +...-.+..+|.+|.
T Consensus       497 ~~v~~~~~ee~~vE~LGiLaNL~  519 (708)
T PF05804_consen  497 KIVSSGDSEEFVVECLGILANLT  519 (708)
T ss_pred             HHhhcCCcHHHHHHHHHHHHhcc
Confidence            8887764 556666666666665

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.71  E-value=3.5e-16  Score=176.35  Aligned_cols=281  Identities=23%  Similarity=0.257  Sum_probs=228.9

Q ss_pred             hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---Cc
Q 005598          402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN---DN  478 (689)
Q Consensus       402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~---~~  478 (689)
                      ....+++.+.+|.+.++.+|.+|+..|..+++.+.+.+..+.+.|+|+.|+.+|.+.+.+|+.+|+++|.||...   ++
T Consensus       231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~  310 (717)
T KOG1048|consen  231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS  310 (717)
T ss_pred             cccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence            356789999999999999999999999999999999999999999999999999999999999999999999854   46


Q ss_pred             cHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCC--------------CHH
Q 005598          479 NKSAIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG--------------TPR  543 (689)
Q Consensus       479 ~k~~i~~~g~l~~Lv~lL~s-~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~--------------~~~  543 (689)
                      |+..|.+.++++.++++|+. ++.++++.++++||||++++..+..|... ++..|.+.+-.+              ...
T Consensus       311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~  389 (717)
T KOG1048|consen  311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDST  389 (717)
T ss_pred             cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccce
Confidence            89999999999999999996 78999999999999999998888777553 455555544311              256


Q ss_pred             HHHHHHHHHHhhhh-chHHHHHHHH-hCcHHHHHHhc-------CCChHHHHHHHHHHHHHhCCch-----h-HH-----
Q 005598          544 GKKDAATALFNLSI-YHENKARIVQ-AGAVKHLVDLM-------DPAAGMVDKAVAVLANLATIPD-----G-RV-----  603 (689)
Q Consensus       544 v~~~Al~aL~nLs~-~~~n~~~lv~-~G~v~~Lv~LL-------~~~~~v~e~Al~~L~nLa~~~e-----~-r~-----  603 (689)
                      +..++..+|.|++. ..+.+.+|.+ .|.|..|+..+       +.+...++.|+.+|.||...-+     . +.     
T Consensus       390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~  469 (717)
T KOG1048|consen  390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI  469 (717)
T ss_pred             eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence            77899999999999 7788999987 89999999876       2467789999999999865211     0 00     


Q ss_pred             ---------------------H----------------------HHhcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhhC
Q 005598          604 ---------------------A----------------------IGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTN  639 (689)
Q Consensus       604 ---------------------~----------------------i~~~g~v~~Lv~lL-~s~s~~~~e~Av~aL~~L~~~  639 (689)
                                           .                      +.+..+|..-+.+| .+..+.+.+.++.+|-||+..
T Consensus       470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~  549 (717)
T KOG1048|consen  470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG  549 (717)
T ss_pred             cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence                                 0                      00111223323334 356889999999999999987


Q ss_pred             CH----hhHHHH-HhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCcC
Q 005598          640 SS----RFCSMV-LQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH  683 (689)
Q Consensus       640 ~~----~~~~~l-v~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~~  683 (689)
                      ..    ..+..+ .++.+.+.|+.+++.+++++.+.++.+|++|+...-
T Consensus       550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r  598 (717)
T KOG1048|consen  550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR  598 (717)
T ss_pred             CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch
Confidence            63    455555 679999999999999999999999999999987543

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.69  E-value=4.1e-16  Score=181.14  Aligned_cols=261  Identities=26%  Similarity=0.301  Sum_probs=221.5

Q ss_pred             HH-HHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCC------------CHHHHHHHHHHHHHhhcC-CccHHHHHH-
Q 005598          421 QR-EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS------------ETKIQENAVTALLNLSIN-DNNKSAIAN-  485 (689)
Q Consensus       421 q~-~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~------------~~~v~~~Al~aL~nLs~~-~~~k~~i~~-  485 (689)
                      |. .|+..|-++.+ +++.|..+-+.|++..+..||.-+            ...++..|..+|.||... ..||..+.. 
T Consensus       314 ~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~  392 (2195)
T KOG2122|consen  314 QLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ  392 (2195)
T ss_pred             hhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence            44 67778888888 679999999999999999987532            235889999999999866 467777665 


Q ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCch--hHHHHHhhCChHHHHHh-hcCCCHHHHHHHHHHHHhhhh-chHH
Q 005598          486 ANAIEPLIHVLQTGSPEARENAAATLFSLSVIED--NKIKIGRSGAIGPLVDL-LGNGTPRGKKDAATALFNLSI-YHEN  561 (689)
Q Consensus       486 ~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~--~k~~I~~~g~I~~Lv~L-L~~~~~~v~~~Al~aL~nLs~-~~~n  561 (689)
                      .|++..+|..|.+...++....+.+|.||+...+  .+..+.+.|-+..|+.. |+.......+..+.|||||+. ..+|
T Consensus       393 rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteN  472 (2195)
T KOG2122|consen  393 RGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTEN  472 (2195)
T ss_pred             hhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccccc
Confidence            5999999999999999999999999999998433  35556666999998877 556667889999999999988 5689


Q ss_pred             HHHHHH-hCcHHHHHHhcC-----CChHHHHHHHHHHHHHh----CCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHH
Q 005598          562 KARIVQ-AGAVKHLVDLMD-----PAAGMVDKAVAVLANLA----TIPDGRVAIGQENGIPVLVEVVELGSARGKENAAA  631 (689)
Q Consensus       562 ~~~lv~-~G~v~~Lv~LL~-----~~~~v~e~Al~~L~nLa----~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~  631 (689)
                      |..|.. .|++..|+.+|.     ..-.+++.|-++|.|.+    .+...|+.+.+.+.+..|++.|++.+-.+.-++|+
T Consensus       473 KA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCG  552 (2195)
T KOG2122|consen  473 KAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACG  552 (2195)
T ss_pred             chhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchh
Confidence            999998 899999999993     23467899999999954    47788999999999999999999999999999999


Q ss_pred             HHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCc
Q 005598          632 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR  682 (689)
Q Consensus       632 aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~  682 (689)
                      +||||...+++.++.+++.|+++.|..|+.+.+..+.+-++..|++|-+++
T Consensus       553 TLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  553 TLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            999999999999999999999999999999999877766666666666555

>smart00504 Ubox Modified RING finger domain

Probab=99.68  E-value=2.8e-17  Score=133.10  Aligned_cols=63  Identities=52%  Similarity=0.892  Sum_probs=60.0

Q ss_pred             ccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHHHHH
Q 005598          100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW  163 (689)
Q Consensus       100 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~  163 (689)
                      +|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|+++++..+++||..||+.|++|
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~   63 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW   63 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence            5899999999999999999999999999999987 46799999999999999999999999988

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.65  E-value=5e-14  Score=144.46  Aligned_cols=275  Identities=17%  Similarity=0.232  Sum_probs=229.9

Q ss_pred             HHHHHHHHhc--CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCcc--
Q 005598          405 QVRKLVEDLK--STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNN--  479 (689)
Q Consensus       405 ~V~~Lv~~L~--s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~-~~~v~~~Al~aL~nLs~~~~~--  479 (689)
                      ....++++|.  .++.++-...+..++.-+..++.||..|.+.++.+.+...|... ..++...+.+++..|..+++.  
T Consensus       146 g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV  225 (461)
T KOG4199|consen  146 AMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRV  225 (461)
T ss_pred             cHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceee
Confidence            3445556655  45666777788899988888899999999999999999777553 346888889999999876654  


Q ss_pred             --------HHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCC----HHHHH
Q 005598          480 --------KSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGT----PRGKK  546 (689)
Q Consensus       480 --------k~~i~~~g~l~~Lv~lL~s~-~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~----~~v~~  546 (689)
                              ...|+..|++..|++.|+.+ ++.+...+..+|..|+..++.+..|.+.|++..|+.++.+.+    ....+
T Consensus       226 ~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k  305 (461)
T KOG4199|consen  226 VFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAK  305 (461)
T ss_pred             ecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHH
Confidence                    35577788999999999865 577888899999999999999999999999999999998742    34567


Q ss_pred             HHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc---CCChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhcc--
Q 005598          547 DAATALFNLSIYHENKARIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL--  620 (689)
Q Consensus       547 ~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL---~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s--  620 (689)
                      .++.+|..|+.++.++..+|+.|+.+.++.++   .+++-+++.++.++..||. .++.-..+++.|+-...++.|+.  
T Consensus       306 ~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP  385 (461)
T KOG4199|consen  306 TCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHP  385 (461)
T ss_pred             HHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCc
Confidence            89999999999999999999999999999987   4677788999999999997 77788888999999999999975  


Q ss_pred             CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598          621 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       621 ~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~  680 (689)
                      ....++.+|++.+.|+...+..++..++. .++..|+......++.+...|..+|+-|-.
T Consensus       386 ~~a~vQrnac~~IRNiv~rs~~~~~~~l~-~GiE~Li~~A~~~h~tce~~akaALRDLGc  444 (461)
T KOG4199|consen  386 VAAQVQRNACNMIRNIVVRSAENRTILLA-NGIEKLIRTAKANHETCEAAAKAALRDLGC  444 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccchHHh-ccHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence            35788999999999999999877777766 567888888888888888888888887643

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.58  E-value=1.1e-12  Score=134.66  Aligned_cols=266  Identities=15%  Similarity=0.242  Sum_probs=225.1

Q ss_pred             hcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHhh-cCCccHHHHHHcCCH
Q 005598          413 LKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLS-INDNNKSAIANANAI  489 (689)
Q Consensus       413 L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s--~~~~v~~~Al~aL~nLs-~~~~~k~~i~~~g~l  489 (689)
                      -.+++.....+++..|..++...|.    +.++.+...++.+|..  ++.++....+..+..-+ .++.+|..+++.+.+
T Consensus       116 a~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il  191 (461)
T KOG4199|consen  116 AESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL  191 (461)
T ss_pred             hhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence            4467888889999999999886654    4566788889998854  46677777777776665 568899999999999


Q ss_pred             HHHHHHHcC-CCHHHHHHHHHHHHhcccCchhH----------HHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhh
Q 005598          490 EPLIHVLQT-GSPEARENAAATLFSLSVIEDNK----------IKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSI  557 (689)
Q Consensus       490 ~~Lv~lL~s-~~~~~~~~Aa~aL~nLs~~~~~k----------~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~  557 (689)
                      +.+...|.. +...+...+.++++.|..+++.|          ..|+..|++..|++.|+-+ ++.+...++.+|..|+.
T Consensus       192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV  271 (461)
T KOG4199|consen  192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV  271 (461)
T ss_pred             HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence            999977764 44567888899999998877644          4577778999999999976 68899999999999999


Q ss_pred             chHHHHHHHHhCcHHHHHHhcCC--C---hHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhc--cCCHHHHHHHH
Q 005598          558 YHENKARIVQAGAVKHLVDLMDP--A---AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE--LGSARGKENAA  630 (689)
Q Consensus       558 ~~~n~~~lv~~G~v~~Lv~LL~~--~---~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~--s~s~~~~e~Av  630 (689)
                      .++.+..+.+.|++..|+.++++  +   ......++.+|..|+.+.+.+..|++.|+.+.++.++.  +.+|.+.+.++
T Consensus       272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~  351 (461)
T KOG4199|consen  272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM  351 (461)
T ss_pred             HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence            99999999999999999999932  2   23567899999999999999999999999999999985  46899999999


Q ss_pred             HHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCC--HHHHHHHHHHHHHhhcCc
Q 005598          631 AALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT--PRAKEKAQALLSYFRNQR  682 (689)
Q Consensus       631 ~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~--~~vr~~A~~lL~~L~~~~  682 (689)
                      .++.-||...+++...+++.|+-...++-|+...  ..++++|.++++++..+.
T Consensus       352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs  405 (461)
T KOG4199|consen  352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS  405 (461)
T ss_pred             HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999888775  469999999999997653

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.53  E-value=4.2e-13  Score=151.71  Aligned_cols=279  Identities=22%  Similarity=0.251  Sum_probs=222.9

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcc--cHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcc
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD--NRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNN  479 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~--nr~~i~~~g~I~~Lv~lL~s-~~~~v~~~Al~aL~nLs~~~~~  479 (689)
                      -+.|+.||.+|.+.+.++|.+|+++|++|.+.+..  |+..|.+.++|+.|+++|+. .|.++++.+..+|+||+..+..
T Consensus       274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~l  353 (717)
T KOG1048|consen  274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDAL  353 (717)
T ss_pred             hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHH
Confidence            45789999999999999999999999999987766  89999999999999999987 6899999999999999988766


Q ss_pred             HHHHHHcCCHHHHHHHHcCC--------------CHHHHHHHHHHHHhccc-CchhHHHHHhh-CChHHHHHhhcC----
Q 005598          480 KSAIANANAIEPLIHVLQTG--------------SPEARENAAATLFSLSV-IEDNKIKIGRS-GAIGPLVDLLGN----  539 (689)
Q Consensus       480 k~~i~~~g~l~~Lv~lL~s~--------------~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~-g~I~~Lv~LL~~----  539 (689)
                      |..++.. ++..|..-+-.+              ..++-.+++++|.|++. ..+.+..+.+. |.|..|+.++++    
T Consensus       354 K~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~  432 (717)
T KOG1048|consen  354 KMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQK  432 (717)
T ss_pred             HHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHh
Confidence            6666553 344444322110              24567788999999977 66778888776 888887777651    


Q ss_pred             --CCH---------------------------------------------------------------------------
Q 005598          540 --GTP---------------------------------------------------------------------------  542 (689)
Q Consensus       540 --~~~---------------------------------------------------------------------------  542 (689)
                        .+.                                                                           
T Consensus       433 ~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e  512 (717)
T KOG1048|consen  433 SDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSE  512 (717)
T ss_pred             ccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCce
Confidence              011                                                                           


Q ss_pred             ---------------------HHHHHHHHHHHhhhhch-----HHHHHH-HHhCcHHHHHHhc-CCChHHHHHHHHHHHH
Q 005598          543 ---------------------RGKKDAATALFNLSIYH-----ENKARI-VQAGAVKHLVDLM-DPAAGMVDKAVAVLAN  594 (689)
Q Consensus       543 ---------------------~v~~~Al~aL~nLs~~~-----~n~~~l-v~~G~v~~Lv~LL-~~~~~v~e~Al~~L~n  594 (689)
                                           .+.++++.||-||+...     ..+..+ .++.+.+.|+++| ..+..++..++++|.|
T Consensus       513 ~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrN  592 (717)
T KOG1048|consen  513 WLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRN  592 (717)
T ss_pred             eeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhh
Confidence                                 12225677777776632     233444 5677889999999 5678899999999999


Q ss_pred             HhCCchhHHHHHhcCcHHHHHHHhccC------CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCC-HHH
Q 005598          595 LATIPDGRVAIGQENGIPVLVEVVELG------SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT-PRA  667 (689)
Q Consensus       595 La~~~e~r~~i~~~g~v~~Lv~lL~s~------s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~-~~v  667 (689)
                      |+.+...++.|. .++++.|+..|...      ++++...++.+|+++...+..+...+.+.+++++|+.|..+.. +++
T Consensus       593 ls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~  671 (717)
T KOG1048|consen  593 LSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKE  671 (717)
T ss_pred             hccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHH
Confidence            999999998888 77899999999642      3688888999999999999999999999999999999998864 689


Q ss_pred             HHHHHHHHHHhhcCcC
Q 005598          668 KEKAQALLSYFRNQRH  683 (689)
Q Consensus       668 r~~A~~lL~~L~~~~~  683 (689)
                      -+.|..+|..|+.+.+
T Consensus       672 ~kaAs~vL~~lW~y~e  687 (717)
T KOG1048|consen  672 FKAASSVLDVLWQYKE  687 (717)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988764

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.46  E-value=8.8e-12  Score=128.52  Aligned_cols=191  Identities=22%  Similarity=0.279  Sum_probs=169.6

Q ss_pred             hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 005598          403 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS  481 (689)
Q Consensus       403 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~  481 (689)
                      .+.++.|+.+|+ +.++.+|..++..+.+.+. .+.++..+.+.|+++.+..+|..+++.+++.|+.+|.|++.+.+++.
T Consensus        11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~   89 (254)
T PF04826_consen   11 AQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE   89 (254)
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence            467899999999 4689999999999999877 56899999999999999999999999999999999999999988888


Q ss_pred             HHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhch
Q 005598          482 AIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH  559 (689)
Q Consensus       482 ~i~~~g~l~~Lv~lL~s~--~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~  559 (689)
                      .+-.  +++.+++.+.+.  +.+++..++.+|.+|+..++++..+..  .++.++.+|..++..++..++++|.||+.++
T Consensus        90 ~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np  165 (254)
T PF04826_consen   90 QIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSENP  165 (254)
T ss_pred             HHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence            7643  577777655443  578899999999999998888777754  7999999999999999999999999999999


Q ss_pred             HHHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHhCC
Q 005598          560 ENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATI  598 (689)
Q Consensus       560 ~n~~~lv~~G~v~~Lv~LL~--~~~~v~e~Al~~L~nLa~~  598 (689)
                      .+...++.++++..++.+++  ...++...++.++.||..+
T Consensus       166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            99999999999999999993  4678889999999999764

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=1.5e-12  Score=128.62  Aligned_cols=159  Identities=24%  Similarity=0.318  Sum_probs=113.1

Q ss_pred             hhHHHHHHH--HHHHhhCCCCCCHHHHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHHH----------HhhhChH----
Q 005598            4 EQTSSLIKE--AIRDQVDGVAPSSEILVKVAESLSLRSNQEIL-IEAVALEKLKENAEQ----------AEKAGEA----   66 (689)
Q Consensus         4 ~~~~~~i~~--~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~-~e~~~l~~~~~~~~~----------~~~~~~~----   66 (689)
                      |-|-...++  .++++.-..+.+.....+.|+++.+....+.. .+...+..-.+....          .+.....    
T Consensus        96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~El~~yl~slie~~~~~~~s~~~~N~~sde~~k  175 (284)
T KOG4642|consen   96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELELHSYLESLIEGDRERELSEWQENGESDEHLK  175 (284)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhhHHHHHHHHhccchhhHHHHHHHcCCChHHHh
Confidence            345555555  77887777788888889999988887665553 122222222221100          0010000    


Q ss_pred             -----------HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccccccccccCceecCCCccccHHHHHHHHhcCC
Q 005598           67 -----------EFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGL  135 (689)
Q Consensus        67 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~  135 (689)
                                 .....+.++..++.+.         ....++|+.++|.|++++|+|||+.|+|.||+|..|.++++.-+
T Consensus       176 ~~q~~~~~~~d~~~kel~elf~~v~e~---------rk~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvg  246 (284)
T KOG4642|consen  176 TMQVPIEQDHDHTTKELSELFSKVDEK---------RKKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVG  246 (284)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHH---------hccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhc
Confidence                       1222222333332221         24667999999999999999999999999999999999999877


Q ss_pred             CCCCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCCC
Q 005598          136 FVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKL  171 (689)
Q Consensus       136 ~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~  171 (689)
                      +.+|+|+.+|+..+++||++|+..|..|.+.|.|..
T Consensus       247 hfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~~  282 (284)
T KOG4642|consen  247 HFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWAD  282 (284)
T ss_pred             cCCchhcccCCHHhhccchHHHHHHHHHHHhccccc
Confidence            889999999999999999999999999999999864

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.42  E-value=1.7e-12  Score=151.61  Aligned_cols=223  Identities=22%  Similarity=0.261  Sum_probs=193.3

Q ss_pred             HHHHHHHHHHHHhhccCcccHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-C-ccHHHHHHcCCHHHHHH-
Q 005598          419 DTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSIN-D-NNKSAIANANAIEPLIH-  494 (689)
Q Consensus       419 ~~q~~Al~~L~~La~~s~~nr~~i~~~-g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~-~~k~~i~~~g~l~~Lv~-  494 (689)
                      .+++.|+-+|.+|++++..|+..+... |++..+|..|.+...+++.....+|.||++. + +.+..+.+.|-+..|+. 
T Consensus       366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~  445 (2195)
T KOG2122|consen  366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAAC  445 (2195)
T ss_pred             HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHH
Confidence            456778889999999999998887654 9999999999998889999999999999976 3 44667778899999886 


Q ss_pred             HHcCCCHHHHHHHHHHHHhccc-CchhHHHHHhh-CChHHHHHhhcCC----CHHHHHHHHHHHHhhhh----chHHHHH
Q 005598          495 VLQTGSPEARENAAATLFSLSV-IEDNKIKIGRS-GAIGPLVDLLGNG----TPRGKKDAATALFNLSI----YHENKAR  564 (689)
Q Consensus       495 lL~s~~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~-g~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~----~~~n~~~  564 (689)
                      .|...........+.+||||+. ..+||..|+.- |++..||.+|.-.    ...+...|-++|.|.+.    +..-|+.
T Consensus       446 al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQI  525 (2195)
T KOG2122|consen  446 ALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQI  525 (2195)
T ss_pred             HHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHH
Confidence            4555666778889999999987 57899999886 9999999999854    46788889999999876    4566788


Q ss_pred             HHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH
Q 005598          565 IVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS  641 (689)
Q Consensus       565 lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~  641 (689)
                      +.+.+++..|+..| +..-.+|..+|++||||.. +++.++.+++.|+|+.|..++.+.+..+.+-++.+|.||..+.+
T Consensus       526 LR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  526 LRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             HHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence            88999999999999 5667889999999999976 88999999999999999999999999999999999999998875

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.42  E-value=1.4e-11  Score=126.99  Aligned_cols=194  Identities=20%  Similarity=0.207  Sum_probs=168.8

Q ss_pred             HhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhH
Q 005598          443 ANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK  521 (689)
Q Consensus       443 ~~~g~I~~Lv~lL~s-~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k  521 (689)
                      .+.+.++.|+.+|+. .++.+++.++.++.+.+..+.++..+.+.|+++.+..+|.++++.++..|+.+|.|++...+++
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            455778999999985 6899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhhCChHHHHHhhcCC--CHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC
Q 005598          522 IKIGRSGAIGPLVDLLGNG--TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI  598 (689)
Q Consensus       522 ~~I~~~g~I~~Lv~LL~~~--~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~  598 (689)
                      ..|-.  .++.+++.+.+.  +..++..++++|.||+..++....+.  +.++.++.+| ..+..+...++++|.||+.+
T Consensus        89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n  164 (254)
T PF04826_consen   89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN  164 (254)
T ss_pred             HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence            88743  466666655543  67889999999999999877766553  4789999999 56778889999999999999


Q ss_pred             chhHHHHHhcCcHHHHHHHhccC-CHHHHHHHHHHHHHHhhCC
Q 005598          599 PDGRVAIGQENGIPVLVEVVELG-SARGKENAAAALLQLCTNS  640 (689)
Q Consensus       599 ~e~r~~i~~~g~v~~Lv~lL~s~-s~~~~e~Av~aL~~L~~~~  640 (689)
                      +.....++..+++..++.++... +......++.+..|+..+-
T Consensus       165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~  207 (254)
T PF04826_consen  165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI  207 (254)
T ss_pred             HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999875 6778888999999986653

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.40  E-value=1.3e-10  Score=131.97  Aligned_cols=277  Identities=17%  Similarity=0.169  Sum_probs=222.0

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA  482 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~  482 (689)
                      ....+.|...|.++++.++..++..|..++.++......+.+.+.++.++.+|..++..+...|+.+|.+|+..+.....
T Consensus        76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~  155 (503)
T PF10508_consen   76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ  155 (503)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH
Confidence            56778899999999999999999999999987766666777889999999999999999999999999999988877778


Q ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccC-chhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHH
Q 005598          483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN  561 (689)
Q Consensus       483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~-~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n  561 (689)
                      +...+.+..|..++...+..+|..+..++.+++.. ++....+...|+++.++..|++.+.-++.+++.+|..|+..+.+
T Consensus       156 l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g  235 (503)
T PF10508_consen  156 LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG  235 (503)
T ss_pred             HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH
Confidence            88888899999999888888999999999999764 55566666779999999999999999999999999999999999


Q ss_pred             HHHHHHhCcHHHHHHhc-C--CCh---H-HHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHH
Q 005598          562 KARIVQAGAVKHLVDLM-D--PAA---G-MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL  634 (689)
Q Consensus       562 ~~~lv~~G~v~~Lv~LL-~--~~~---~-v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~  634 (689)
                      ...+.+.|+++.|..++ +  .++   . +.-..+...++++......-.-.-...+..|..++.+.++..+..|..+|.
T Consensus       236 ~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg  315 (503)
T PF10508_consen  236 LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLG  315 (503)
T ss_pred             HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence            99999999999999998 2  122   1 223445677777774222111111234566677778899999999999999


Q ss_pred             HHhhCCHhhHHHH-HhC-CC----hHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598          635 QLCTNSSRFCSMV-LQE-GA----VPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       635 ~L~~~~~~~~~~l-v~~-g~----i~~L~~LL~~~~~~vr~~A~~lL~~L~~  680 (689)
                      .++.... ....+ .+. +.    +..+.....++...+|-++..+|..+-.
T Consensus       316 ~igst~~-G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~  366 (503)
T PF10508_consen  316 QIGSTVE-GKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT  366 (503)
T ss_pred             HHhCCHH-HHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence            9997665 44444 433 33    4444445666777899999998888843

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=7.6e-12  Score=136.48  Aligned_cols=131  Identities=21%  Similarity=0.262  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHH---HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHH
Q 005598            7 SSLIKEAIRDQVDGVAPSSEILVK---VAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRL   83 (689)
Q Consensus         7 ~~~i~~~~~~~~~~~~~~~~~~~~---ia~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (689)
                      .+|||+++.|   ++.++.+.+.+   |.++.-+.++.++.+ +..+....|+.+..+..+++                 
T Consensus       788 s~FveaVA~D---~rsf~~~~F~rA~~I~~~k~L~s~~~IE~-l~~f~nr~E~~r~~ea~EeE-----------------  846 (929)
T COG5113         788 SKFVEAVASD---KRSFDIDFFRRALRICENKYLISESQIEE-LRSFINRLEKVRVIEAVEEE-----------------  846 (929)
T ss_pred             HHHHHHHHcc---cccccHHHHHHHHHHHhccccCCHHHHHH-HHHHHHHHHHHHHHHhhhhh-----------------
Confidence            4688888887   56688888874   455666777776633 44444434433222222222                 


Q ss_pred             HHHhhhccCCCCCCCCccccccccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHHHH
Q 005598           84 VMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIAN  162 (689)
Q Consensus        84 ~~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~  162 (689)
                               +..+||++|..|++..+|+|||++| +|.+.||+.|..|+..+ .++|+.|.||+.++.+||..||+.|-.
T Consensus       847 ---------D~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd-~tDPFNRmPLtlddVtpn~eLrekIn~  916 (929)
T COG5113         847 ---------DMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSD-GTDPFNRMPLTLDDVTPNAELREKINR  916 (929)
T ss_pred             ---------hccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcC-CCCccccCCCchhhcCCCHHHHHHHHH
Confidence                     3445999999999999999999986 79999999999999976 779999999999999999999999999


Q ss_pred             HHHHcC
Q 005598          163 WCELNN  168 (689)
Q Consensus       163 ~~~~~~  168 (689)
                      |.+..+
T Consensus       917 f~k~k~  922 (929)
T COG5113         917 FYKCKG  922 (929)
T ss_pred             HHhccc
Confidence            976544

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=1.7e-11  Score=142.20  Aligned_cols=130  Identities=28%  Similarity=0.408  Sum_probs=95.6

Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHhc---CCCcHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHH
Q 005598            8 SLIKEAIRDQVDGVAPSSEILVKVAESL---SLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLV   84 (689)
Q Consensus         8 ~~i~~~~~~~~~~~~~~~~~~~~ia~~~---~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (689)
                      .|.++++.|   ++.++.+.|......+   .+++..++ .+...|....++....+...++++.               
T Consensus       805 ~F~~avA~D---~RSys~~lF~~a~~~~~k~~l~~~~~I-e~~s~la~~~~~~~~~~~~eee~l~---------------  865 (943)
T KOG2042|consen  805 SFVEAVAKD---GRSYSEELFNHAISILRKRILKSSRQI-EEFSELAERVEATASIDAEEEEELG---------------  865 (943)
T ss_pred             hHHHHHhcc---ccccCHHHHhhhHHHHHHhhcccHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc---------------
Confidence            466667766   5557777777555444   44444444 2355555544443222211122222               


Q ss_pred             HHhhhccCCCCCCCCccccccccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHHHHH
Q 005598           85 MIKQSQICSPVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW  163 (689)
Q Consensus        85 ~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~  163 (689)
                                 ++|++|..||+..+|+|||++| +|++.||+.|++|+..+ .++|+||.+|+.+++.||.+||..|+.|
T Consensus       866 -----------dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~-~tdPFNR~pLt~d~v~pn~eLK~kI~~~  933 (943)
T KOG2042|consen  866 -----------DVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSD-CTDPFNREPLTEDMVSPNEELKAKIRCW  933 (943)
T ss_pred             -----------cCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcC-CCCccccccCchhhcCCCHHHHHHHHHH
Confidence                       3899999999999999999998 89999999999999976 7799999999999999999999999999


Q ss_pred             HHHcC
Q 005598          164 CELNN  168 (689)
Q Consensus       164 ~~~~~  168 (689)
                      ..++.
T Consensus       934 ~~ek~  938 (943)
T KOG2042|consen  934 IKEKR  938 (943)
T ss_pred             HHHhh
Confidence            87654

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=8.6e-10  Score=117.92  Aligned_cols=275  Identities=15%  Similarity=0.201  Sum_probs=204.6

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA  482 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~  482 (689)
                      +..|..||+.|.-++.+........|..|+.-. +|+..+.+.|.|..|+.++...+++++...+..|.||+.+...+..
T Consensus       303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K  381 (791)
T KOG1222|consen  303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK  381 (791)
T ss_pred             HhHHHHHHHHHcccchHHHHHHHHHHHHhhhhc-cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence            567888999999888888888888999998754 8999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhchHH
Q 005598          483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHEN  561 (689)
Q Consensus       483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~~n  561 (689)
                      ++..|.+|.|+.+|.+...  ...|+..|..++.+++.+..+.-..+|+.+++.+-.+ ..++..+.+..-.|||.+..|
T Consensus       382 Mv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN  459 (791)
T KOG1222|consen  382 MVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN  459 (791)
T ss_pred             HhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence            9999999999999976442  3357788999999999999998889999999887665 455555555555688888887


Q ss_pred             HHHHHHhCcHHHHHHhc-C--------------------------------------CChHHHHHHHHHHHHHhCCch--
Q 005598          562 KARIVQAGAVKHLVDLM-D--------------------------------------PAAGMVDKAVAVLANLATIPD--  600 (689)
Q Consensus       562 ~~~lv~~G~v~~Lv~LL-~--------------------------------------~~~~v~e~Al~~L~nLa~~~e--  600 (689)
                      .+.+++..++..|++.- .                                      .+....-.++++|+||....-  
T Consensus       460 aQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw  539 (791)
T KOG1222|consen  460 AQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDW  539 (791)
T ss_pred             ceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCH
Confidence            77777665665555421 0                                      111223357778887744211  


Q ss_pred             ------------------------------------------hHHHHHhcCcHHHHHHHhcc--CCHHHHHHHHHHHHHH
Q 005598          601 ------------------------------------------GRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQL  636 (689)
Q Consensus       601 ------------------------------------------~r~~i~~~g~v~~Lv~lL~s--~s~~~~e~Av~aL~~L  636 (689)
                                                                ....+..++.|+.|+++|+.  .+++..-..+.+...+
T Consensus       540 ~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~  619 (791)
T KOG1222|consen  540 AKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQF  619 (791)
T ss_pred             HHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence                                                      11122345677778888765  2444455556666666


Q ss_pred             hhCCHhhHHHHHh-CCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 005598          637 CTNSSRFCSMVLQ-EGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ  681 (689)
Q Consensus       637 ~~~~~~~~~~lv~-~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~  681 (689)
                      ..+.. .+..+++ ...-..|+.|+...+..+|+.+--+|-.+..+
T Consensus       620 l~He~-tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~  664 (791)
T KOG1222|consen  620 LKHEL-TRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH  664 (791)
T ss_pred             HHHHH-HHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            66633 4444554 44555799999999999999888777777654

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.16  E-value=4.6e-09  Score=119.45  Aligned_cols=273  Identities=15%  Similarity=0.125  Sum_probs=212.2

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc-HHHHHHcC
Q 005598          409 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN-KSAIANAN  487 (689)
Q Consensus       409 Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~-k~~i~~~g  487 (689)
                      ++..|.+.+.+.-..++..|..+.... .....  ..+..+.|...|.++++.|+..+++.|.++..+... ...+.+.+
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~  119 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE  119 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence            778888777776677777787776632 22222  457889999999999999999999999999876555 44556779


Q ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc-hHHHHHHH
Q 005598          488 AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIV  566 (689)
Q Consensus       488 ~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~~n~~~lv  566 (689)
                      .++.++..|.+++..+...|+.+|..|+.....-..+...+.+..|..++...+..++..+..++.+++.. ++....+.
T Consensus       120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~  199 (503)
T PF10508_consen  120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV  199 (503)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999999999999999999999999999887777788888899999999988888899999999999874 55666777


Q ss_pred             HhCcHHHHHHhcCCC-hHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccC--CH-H---HHHHHHHHHHHHhhC
Q 005598          567 QAGAVKHLVDLMDPA-AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG--SA-R---GKENAAAALLQLCTN  639 (689)
Q Consensus       567 ~~G~v~~Lv~LL~~~-~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~--s~-~---~~e~Av~aL~~L~~~  639 (689)
                      ..|+++.++..|+.+ .-++..|+.+|..|+..+.+.+.+.+.|+++.|+.++...  ++ .   ..-..+....+++..
T Consensus       200 ~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~  279 (503)
T PF10508_consen  200 NSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV  279 (503)
T ss_pred             hccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence            799999999999544 4456789999999999999999999999999999999653  33 1   111222444556654


Q ss_pred             CHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCcCCC
Q 005598          640 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGN  685 (689)
Q Consensus       640 ~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~~~~  685 (689)
                      .+...... -...+..|..++.+.++..+..|...|..+....+|+
T Consensus       280 ~~~~v~~~-~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~  324 (503)
T PF10508_consen  280 SPQEVLEL-YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGK  324 (503)
T ss_pred             ChHHHHHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHH
Confidence            43211111 1245556777788888999999999999888766654

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.15  E-value=2.7e-09  Score=113.10  Aligned_cols=279  Identities=16%  Similarity=0.169  Sum_probs=210.7

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC----CC---HHHHHHHHHHHHHhhc
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS----SE---TKIQENAVTALLNLSI  475 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s----~~---~~v~~~Al~aL~nLs~  475 (689)
                      .+.+..|.+...|.+.++..+..+.|.++++.+.++|..|.+.|+-..++.+|+.    ++   .+....+...|.|-..
T Consensus        86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            3566666677778888899999999999999999999999999997777777754    22   3556667778888765


Q ss_pred             C-CccHHHHHHcCCHHHHHHHHcCC----------------------------------------------CHHHHHHHH
Q 005598          476 N-DNNKSAIANANAIEPLIHVLQTG----------------------------------------------SPEARENAA  508 (689)
Q Consensus       476 ~-~~~k~~i~~~g~l~~Lv~lL~s~----------------------------------------------~~~~~~~Aa  508 (689)
                      + +..+..+++.|+++.|..++.-+                                              .++.++...
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            4 56678888888888776554311                                              112233334


Q ss_pred             HHHHhcccCchhHHHHHhhCChHHHHHhhcC-CC-------HHHHHHHHHHHHhhhhchHHHHHHHHhC-cHHHHHHhc-
Q 005598          509 ATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-GT-------PRGKKDAATALFNLSIYHENKARIVQAG-AVKHLVDLM-  578 (689)
Q Consensus       509 ~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~-~~-------~~v~~~Al~aL~nLs~~~~n~~~lv~~G-~v~~Lv~LL-  578 (689)
                      .++...+.++..+..+++.|.+..++++++. .+       ....+.++....-|...++.-+++...+ .+..++..+ 
T Consensus       246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~  325 (604)
T KOG4500|consen  246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR  325 (604)
T ss_pred             HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence            4555556666667777788888888888875 11       2233344555555555566666666655 777888888 


Q ss_pred             CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhcc-----CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCh
Q 005598          579 DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-----GSARGKENAAAALLQLCTNSSRFCSMVLQEGAV  653 (689)
Q Consensus       579 ~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s-----~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i  653 (689)
                      +.+......+.-+++|+++..+....+++.+.+..|+..|..     ++-+.++.++.+|.|+.---+ ++..+...|+.
T Consensus       326 S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~-nka~~~~aGvt  404 (604)
T KOG4500|consen  326 SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS-NKAHFAPAGVT  404 (604)
T ss_pred             CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC-chhhccccchH
Confidence            556677788888999999999999999999999999999853     567889999999999987665 77888999999


Q ss_pred             HHHHHhhhcCCHHHHHHHHHHHHHhhcCc
Q 005598          654 PPLVALSQSGTPRAKEKAQALLSYFRNQR  682 (689)
Q Consensus       654 ~~L~~LL~~~~~~vr~~A~~lL~~L~~~~  682 (689)
                      +.++..+....|++.-+-...|++++...
T Consensus       405 eaIL~~lk~~~ppv~fkllgTlrM~~d~q  433 (604)
T KOG4500|consen  405 EAILLQLKLASPPVTFKLLGTLRMIRDSQ  433 (604)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHhch
Confidence            99999999999999988888888887643

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.13  E-value=3e-11  Score=89.25  Aligned_cols=39  Identities=31%  Similarity=0.777  Sum_probs=31.5

Q ss_pred             cccccccccCceecCCCccccHHHHHHHHhcCC---CCCCCC
Q 005598          103 CPLSLELMTDPVIVASGQTYERAFIKKWIDLGL---FVCPKT  141 (689)
Q Consensus       103 CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~---~~cP~t  141 (689)
                      ||||+++|+|||+++|||+||+.||.+||+...   ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999999999999999999999998643   359986

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.11  E-value=1.4e-09  Score=98.24  Aligned_cols=116  Identities=30%  Similarity=0.415  Sum_probs=105.7

Q ss_pred             HHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCch-
Q 005598          442 IANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-  519 (689)
Q Consensus       442 i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~-  519 (689)
                      +.+.|+++.|+.+|.+.+..++..++++|.+++.+ +..+..+.+.|+++.|+.+|.++++.++..++++|.+|+.... 
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~   82 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED   82 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence            56789999999999999999999999999999977 7788888889999999999999999999999999999998764 


Q ss_pred             hHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598          520 NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI  557 (689)
Q Consensus       520 ~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~  557 (689)
                      ....+...|+++.|+++|.+.+..++..++++|.+|+.
T Consensus        83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            45566778999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.11  E-value=3.7e-11  Score=116.40  Aligned_cols=61  Identities=30%  Similarity=0.573  Sum_probs=53.3

Q ss_pred             CCCCCCccccccccccccCceecCCCccccHHHHHHHHhc---------------CCCCCCCCCCcCCCCCCCccH
Q 005598           94 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL---------------GLFVCPKTRQTLAHTTLIPNY  154 (689)
Q Consensus        94 ~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~---------------~~~~cP~t~~~l~~~~l~pn~  154 (689)
                      .++..++|.||||++.++|||+++|||.||+.||.+|+..               +...||+|+.+++...++|.+
T Consensus        12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy   87 (193)
T PLN03208         12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY   87 (193)
T ss_pred             eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence            3456778999999999999999999999999999999852               234699999999999999985

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.08  E-value=3.1e-08  Score=108.76  Aligned_cols=273  Identities=15%  Similarity=0.108  Sum_probs=201.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCccHHHHH
Q 005598          406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNNKSAIA  484 (689)
Q Consensus       406 V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~-~~~v~~~Al~aL~nLs~~~~~k~~i~  484 (689)
                      ...++.+|..++..++..|+..|..+...+..+.......-.+..|...|.+. +...+..++.+|..|...+..|..+.
T Consensus       103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~  182 (429)
T cd00256         103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV  182 (429)
T ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence            45566688888888999999999988765543321111111334555666553 46777888899999988999999999


Q ss_pred             HcCCHHHHHHHHcCC--CHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhch--
Q 005598          485 NANAIEPLIHVLQTG--SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYH--  559 (689)
Q Consensus       485 ~~g~l~~Lv~lL~s~--~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~--  559 (689)
                      +.++++.|+.+|+..  +.+++.+++-++|-|+..++........+.|+.|+++++.. ...+.+.++.+|.||....  
T Consensus       183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~  262 (429)
T cd00256         183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD  262 (429)
T ss_pred             HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence            999999999999863  56899999999999999888777666679999999999976 5789999999999998843  


Q ss_pred             -----HHHHHHHHhCcHHHHHHhcC---CChHHHHHHHH-------HHHHHhCCc------------------------h
Q 005598          560 -----ENKARIVQAGAVKHLVDLMD---PAAGMVDKAVA-------VLANLATIP------------------------D  600 (689)
Q Consensus       560 -----~n~~~lv~~G~v~~Lv~LL~---~~~~v~e~Al~-------~L~nLa~~~------------------------e  600 (689)
                           .....|+..|+.+.+-.+..   .+.++.+..-.       .+..+++..                        +
T Consensus       263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E  342 (429)
T cd00256         263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE  342 (429)
T ss_pred             cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence                 23456777787765555542   34444432111       111222111                        1


Q ss_pred             hHHHHHhcC--cHHHHHHHhc-cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 005598          601 GRVAIGQEN--GIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY  677 (689)
Q Consensus       601 ~r~~i~~~g--~v~~Lv~lL~-s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~  677 (689)
                      +...+-+.+  .+..|+++|. +.++.+...||.=|..+++..|..+..+-+.|+=..++.|+.+.++++|..|..++..
T Consensus       343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk  422 (429)
T cd00256         343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK  422 (429)
T ss_pred             HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            222333333  4788999995 5678888899999999999999888888889999999999999999999999998876


Q ss_pred             h
Q 005598          678 F  678 (689)
Q Consensus       678 L  678 (689)
                      |
T Consensus       423 l  423 (429)
T cd00256         423 L  423 (429)
T ss_pred             H
Confidence            5

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.08  E-value=3.5e-09  Score=95.59  Aligned_cols=116  Identities=28%  Similarity=0.363  Sum_probs=107.3

Q ss_pred             HHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC-chhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH
Q 005598          564 RIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS  641 (689)
Q Consensus       564 ~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~-~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~  641 (689)
                      .+++.|+++.|+++| +.+..++..++.+|.+++.. ++.+..+.+.++++.++++|...++.++..|+++|++++...+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            467899999999999 66678999999999999997 7788888999999999999999999999999999999999988


Q ss_pred             hhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 005598          642 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR  679 (689)
Q Consensus       642 ~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~  679 (689)
                      .....+++.|+++.|..++..++..+++.|.++|..|.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            78888889999999999999999999999999998875

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=3.4e-08  Score=112.02  Aligned_cols=257  Identities=18%  Similarity=0.145  Sum_probs=201.3

Q ss_pred             hhHHHHHHHHhcCC-CHHHHHHHHHHHHH-hhccCcccHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhc-CCc
Q 005598          403 ETQVRKLVEDLKST-SLDTQREATAELRL-LAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSI-NDN  478 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~-La~~s~~nr~~i~~~g~I~~Lv~lL~s~-~~~v~~~Al~aL~nLs~-~~~  478 (689)
                      ..-++.|+.-|+.. ++..|.+|+..|+. |...+++.-..|--.-++|.|+.+|++. +.+++..|+++|.+|+. -+.
T Consensus       166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~  245 (1051)
T KOG0168|consen  166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR  245 (1051)
T ss_pred             hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence            34788899999865 88999999998874 4555554444444457899999999874 68999999999999984 477


Q ss_pred             cHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598          479 NKSAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI  557 (689)
Q Consensus       479 ~k~~i~~~g~l~~Lv~lL~-s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~  557 (689)
                      ....+++.++||.|+.-|. -...++.++++.+|..|+....  ..|.+.|++...+.+|.-.+..+++.|+.+..|.|.
T Consensus       246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7888899999999996554 5679999999999999986433  456688999999999998899999999999999988


Q ss_pred             c--hHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC----CchhHHHHHhcCcHHHHHHHhccC----CHHHH
Q 005598          558 Y--HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT----IPDGRVAIGQENGIPVLVEVVELG----SARGK  626 (689)
Q Consensus       558 ~--~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~----~~e~r~~i~~~g~v~~Lv~lL~s~----s~~~~  626 (689)
                      .  ++.-..+  ..++|.|..+| ..+...++.++-++..++.    .++--+.+...+.|....+||.-.    +..+.
T Consensus       324 si~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~  401 (1051)
T KOG0168|consen  324 SIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY  401 (1051)
T ss_pred             cCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence            3  3333333  34789999999 5667778877777777765    233457788899999999988532    33445


Q ss_pred             HHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcC
Q 005598          627 ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG  663 (689)
Q Consensus       627 e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~  663 (689)
                      ...+..|..+|.+++.....+.+.++...|..+++..
T Consensus       402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~  438 (1051)
T KOG0168|consen  402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY  438 (1051)
T ss_pred             hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence            5567778888999898888899999999999988753

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.04  E-value=2.1e-10  Score=124.04  Aligned_cols=69  Identities=17%  Similarity=0.402  Sum_probs=63.4

Q ss_pred             CCCccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHHHHHHHH
Q 005598           97 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCEL  166 (689)
Q Consensus        97 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~  166 (689)
                      +...|.||||+++|.+||+++|||+||..||..|+... ..||.|+.++....+.+|..|.++|+.|...
T Consensus        23 Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~   91 (397)
T TIGR00599        23 LDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCPLCRAEDQESKLRSNWLVSEIVESFKNL   91 (397)
T ss_pred             cccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCCCCCCccccccCccchHHHHHHHHHHHh
Confidence            56789999999999999999999999999999999865 4699999999888999999999999999753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK09687 putative lyase; Provisional

Probab=99.03  E-value=2e-08  Score=105.65  Aligned_cols=222  Identities=18%  Similarity=0.108  Sum_probs=147.9

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDM-LHSSETKIQENAVTALLNLSINDNNKSA  482 (689)
Q Consensus       404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~l-L~s~~~~v~~~Al~aL~nLs~~~~~k~~  482 (689)
                      ..+..+.+++++.++.++..|++.|..|.... ..     ...+++.|..+ ++..++.|+..|+.+|+++.......  
T Consensus        54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--  125 (280)
T PRK09687         54 DVFRLAIELCSSKNPIERDIGADILSQLGMAK-RC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY--  125 (280)
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--
Confidence            45566666677777777777777777764421 11     12356666665 45567777778888887774322110  


Q ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHH
Q 005598          483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK  562 (689)
Q Consensus       483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~  562 (689)
                        ...++..+...+.+.+..+|..|+.+|..+.          ...+++.|+.+|.+.+..++..|+.+|..+....   
T Consensus       126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---  190 (280)
T PRK09687        126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---  190 (280)
T ss_pred             --chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---
Confidence              1123445666666777778888777776542          3357788888888888888888888888773211   


Q ss_pred             HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH
Q 005598          563 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS  641 (689)
Q Consensus       563 ~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~  641 (689)
                           ..+++.|+.+| +.+..+...|+..|+.+-.          ..+++.|++.|..+.  ++..|+.+|..+..   
T Consensus       191 -----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~---  250 (280)
T PRK09687        191 -----PDIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGD---  250 (280)
T ss_pred             -----HHHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC---
Confidence                 24566777777 5667777788888876432          247888888887765  44556666665543   


Q ss_pred             hhHHHHHhCCChHHHHHhhh-cCCHHHHHHHHHHHH
Q 005598          642 RFCSMVLQEGAVPPLVALSQ-SGTPRAKEKAQALLS  676 (689)
Q Consensus       642 ~~~~~lv~~g~i~~L~~LL~-~~~~~vr~~A~~lL~  676 (689)
                              ..+++.|..++. ..+++++++|.+.|+
T Consensus       251 --------~~a~p~L~~l~~~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        251 --------KTLLPVLDTLLYKFDDNEIITKAIDKLK  278 (280)
T ss_pred             --------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence                    246889999997 778999999999876

>PRK09687 putative lyase; Provisional

Probab=98.95  E-value=5.8e-08  Score=102.19  Aligned_cols=223  Identities=13%  Similarity=0.052  Sum_probs=167.6

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI  483 (689)
Q Consensus       404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i  483 (689)
                      ..+..|+..|.+.+..++..|+..|..+..           ..+++.+..++.+.++.++..|+++|+.|......    
T Consensus        23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----   87 (280)
T PRK09687         23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----   87 (280)
T ss_pred             ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence            467889999999999999999999887643           34677888999999999999999999998543221    


Q ss_pred             HHcCCHHHHHHH-HcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHH
Q 005598          484 ANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK  562 (689)
Q Consensus       484 ~~~g~l~~Lv~l-L~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~  562 (689)
                       ....++.|..+ ++++++.++..|+.+|..+.......    ...++..+..++.+.+..++..++.+|..+.      
T Consensus        88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~------  156 (280)
T PRK09687         88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN------  156 (280)
T ss_pred             -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC------
Confidence             22456777766 67788999999999999985422110    1134666778888889999999999997653      


Q ss_pred             HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH
Q 005598          563 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS  641 (689)
Q Consensus       563 ~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~  641 (689)
                          ...+++.|+.+| +++..+...|+.+|+.+....        ..+++.|+.+|...++.++..|+.+|..+-.   
T Consensus       157 ----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~---  221 (280)
T PRK09687        157 ----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD---  221 (280)
T ss_pred             ----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC---
Confidence                234788999999 677788899999999883311        1467889999999999999999999987432   


Q ss_pred             hhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 005598          642 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY  677 (689)
Q Consensus       642 ~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~  677 (689)
                              ..+++.|+..++.+..  +..|...|..
T Consensus       222 --------~~av~~Li~~L~~~~~--~~~a~~ALg~  247 (280)
T PRK09687        222 --------KRVLSVLIKELKKGTV--GDLIIEAAGE  247 (280)
T ss_pred             --------hhHHHHHHHHHcCCch--HHHHHHHHHh
Confidence                    2467778888777663  3344444433

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=1.3e-08  Score=109.17  Aligned_cols=198  Identities=23%  Similarity=0.305  Sum_probs=165.3

Q ss_pred             CHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhc
Q 005598          459 ETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG  538 (689)
Q Consensus       459 ~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~  538 (689)
                      ...+...|+..|.||+.+...-..+...+.+..|++.|...+.++.......|..|+..++++..+.+.|.++.|++++.
T Consensus       276 QeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp  355 (791)
T KOG1222|consen  276 QEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFP  355 (791)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcC
Confidence            34567789999999998877777888889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHh
Q 005598          539 NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV  618 (689)
Q Consensus       539 ~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL  618 (689)
                      ..+++.+...+..|+||+.....+.+|+..|.+|.|..+|+++. -..-|+.+|.+++.....+..+....+|+.+.+.+
T Consensus       356 ~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~-~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v  434 (791)
T KOG1222|consen  356 IQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT-KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDV  434 (791)
T ss_pred             CCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc-cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999995432 13458889999999888898899999999999988


Q ss_pred             ccCCH-HHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHH
Q 005598          619 ELGSA-RGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVA  658 (689)
Q Consensus       619 ~s~s~-~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~  658 (689)
                      ..+.. ++...-+..-.|||.+.. +.+.+.+..++..|+.
T Consensus       435 ~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~  474 (791)
T KOG1222|consen  435 LSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLME  474 (791)
T ss_pred             HhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHH
Confidence            76543 333333334467777654 5566666556665554

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=98.93  E-value=6.9e-08  Score=102.61  Aligned_cols=279  Identities=15%  Similarity=0.114  Sum_probs=208.6

Q ss_pred             ccchhhHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC-CC-------HHHHHHHHHH
Q 005598          399 LSGIETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SE-------TKIQENAVTA  469 (689)
Q Consensus       399 l~~~~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s-~~-------~~v~~~Al~a  469 (689)
                      +......+..+++.+.+. +++........+...+. ++..+-.+++.|.+.-++.+++. .+       -.....++..
T Consensus       218 ~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el  296 (604)
T KOG4500|consen  218 FCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAEL  296 (604)
T ss_pred             hhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhH
Confidence            334456677777777753 44444455555555554 66788889999999999999875 21       1223344444


Q ss_pred             HHHhhcCCccHHHHHHcC-CHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhc-----CCCHH
Q 005598          470 LLNLSINDNNKSAIANAN-AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG-----NGTPR  543 (689)
Q Consensus       470 L~nLs~~~~~k~~i~~~g-~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~-----~~~~~  543 (689)
                      ..-|..+++....+...+ +++.++.-+.+.+..+...++-+|.|++..+++...+++.|++..|+++|-     +++.+
T Consensus       297 ~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~  376 (604)
T KOG4500|consen  297 DVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVE  376 (604)
T ss_pred             hhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccch
Confidence            444455666666666555 888899999999999999999999999999999999999999999999985     35788


Q ss_pred             HHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCch-hHHHHHhc-CcHHHHHHHhcc
Q 005598          544 GKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD-GRVAIGQE-NGIPVLVEVVEL  620 (689)
Q Consensus       544 v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e-~r~~i~~~-g~v~~Lv~lL~s  620 (689)
                      .+.+++.||.||.....|+..++.+|+++.++.++ ...++++-.-++.|+.+....+ ...++.+. ..+..|+..-++
T Consensus       377 ~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks  456 (604)
T KOG4500|consen  377 RQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKS  456 (604)
T ss_pred             hHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhC
Confidence            99999999999999999999999999999999998 4567788889999998876544 33344433 347788888777


Q ss_pred             CCHH-HHHHHHHHHHHHhhCC--HhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 005598          621 GSAR-GKENAAAALLQLCTNS--SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF  678 (689)
Q Consensus       621 ~s~~-~~e~Av~aL~~L~~~~--~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L  678 (689)
                      .+-. +.-..-..|..+.+++  .+....+.+.|++..++..+...+-..+..|.-+|-.+
T Consensus       457 ~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~  517 (604)
T KOG4500|consen  457 PDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLST  517 (604)
T ss_pred             CccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHH
Confidence            6544 6667777888888874  34566677889999998888877766666655544443

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.90  E-value=5.6e-08  Score=104.11  Aligned_cols=230  Identities=17%  Similarity=0.173  Sum_probs=163.9

Q ss_pred             cHHHHHHhhcC--CCHHHHHHHHHHHHHhhcC-CccHHHHHH------cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccC
Q 005598          447 AINILVDMLHS--SETKIQENAVTALLNLSIN-DNNKSAIAN------ANAIEPLIHVLQTGSPEARENAAATLFSLSVI  517 (689)
Q Consensus       447 ~I~~Lv~lL~s--~~~~v~~~Al~aL~nLs~~-~~~k~~i~~------~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~  517 (689)
                      ....++.+|+.  .+.++....+..+..+..+ +.....+..      ...+.++++++.+++..++..|+..|..|...
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence            35556666654  5788999999999998655 444444443      13688899999999999999999999999876


Q ss_pred             chhHHHHHhhCChHHHHHhhcCC----CHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc------CCCh--HHH
Q 005598          518 EDNKIKIGRSGAIGPLVDLLGNG----TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM------DPAA--GMV  585 (689)
Q Consensus       518 ~~~k~~I~~~g~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL------~~~~--~v~  585 (689)
                      ...+......+.++.++++|++.    +......|+.+|.+|...++.|..+.+.|+++.|+.+|      ....  .+.
T Consensus       136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~  215 (312)
T PF03224_consen  136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ  215 (312)
T ss_dssp             TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred             CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence            55544443356778888888753    34566889999999999999999999999999999998      2222  344


Q ss_pred             HHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhhCCHh-hHHHHHhCCChHHHHHhhhcC
Q 005598          586 DKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVALSQSG  663 (689)
Q Consensus       586 e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s-~s~~~~e~Av~aL~~L~~~~~~-~~~~lv~~g~i~~L~~LL~~~  663 (689)
                      -.++-+++.|+.+++....+.+.+.++.|+++++. ..+++.+.++.+|.||+...++ ....++..|+++.|-.|....
T Consensus       216 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk  295 (312)
T PF03224_consen  216 YQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERK  295 (312)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS-
T ss_pred             HHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCC
Confidence            58999999999999999999999999999999975 5789999999999999988764 667777777666666665543


Q ss_pred             --CHHHHHHHHHHHH
Q 005598          664 --TPRAKEKAQALLS  676 (689)
Q Consensus       664 --~~~vr~~A~~lL~  676 (689)
                        ++.+.+-...+-.
T Consensus       296 ~~Dedl~edl~~L~e  310 (312)
T PF03224_consen  296 WSDEDLTEDLEFLKE  310 (312)
T ss_dssp             -SSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence              5777766555443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.86  E-value=2.3e-07  Score=99.39  Aligned_cols=219  Identities=19%  Similarity=0.169  Sum_probs=162.2

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhc------CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 005598          408 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC------GAINILVDMLHSSETKIQENAVTALLNLSINDNNKS  481 (689)
Q Consensus       408 ~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~------g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~  481 (689)
                      .|++.+ +.+.+.....+..+..+...++.....+...      .....|+.++.++|..++..|+.+|..|......+.
T Consensus        62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~  140 (312)
T PF03224_consen   62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS  140 (312)
T ss_dssp             HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred             HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence            444444 5677888889999999988887666666552      257788889999999999999999999975543333


Q ss_pred             HHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhh------cCC-CHHHHHHHHH
Q 005598          482 AIANANAIEPLIHVLQT----GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL------GNG-TPRGKKDAAT  550 (689)
Q Consensus       482 ~i~~~g~l~~Lv~lL~s----~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL------~~~-~~~v~~~Al~  550 (689)
                      .-...+.++.++..|.+    .+.+.+..++.+|.+|...+.+|..+.+.++++.|+++|      ... ..+....++.
T Consensus       141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll  220 (312)
T PF03224_consen  141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL  220 (312)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence            33225566777777765    345577899999999999999999999999999999999      222 5788999999


Q ss_pred             HHHhhhhchHHHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCch--hHHHHHhcCcHHHHHHHhcc--CCHH
Q 005598          551 ALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPD--GRVAIGQENGIPVLVEVVEL--GSAR  624 (689)
Q Consensus       551 aL~nLs~~~~n~~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e--~r~~i~~~g~v~~Lv~lL~s--~s~~  624 (689)
                      +++.|+.+++....+...+.++.|++++  .....++.-++++|.||.....  ....++..++++.+-.+...  .+++
T Consensus       221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Ded  300 (312)
T PF03224_consen  221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDED  300 (312)
T ss_dssp             HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHH
T ss_pred             HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHH
Confidence            9999999999999999999999999999  5677899999999999999666  67788887777776666654  3555


Q ss_pred             HHH
Q 005598          625 GKE  627 (689)
Q Consensus       625 ~~e  627 (689)
                      ..+
T Consensus       301 l~e  303 (312)
T PF03224_consen  301 LTE  303 (312)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.82  E-value=1.6e-09  Score=85.26  Aligned_cols=44  Identities=30%  Similarity=0.587  Sum_probs=31.4

Q ss_pred             CccccccccccccCcee-cCCCccccHHHHHHHHhcC-CCCCCCCC
Q 005598           99 SDFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLG-LFVCPKTR  142 (689)
Q Consensus        99 ~~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~l~~~-~~~cP~t~  142 (689)
                      -.|+||||+..|+|||+ ..|||+|||++|.+|+..+ ...||+.|
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G   55 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG   55 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence            45899999999999998 4899999999999999543 34599965

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.77  E-value=4.4e-09  Score=76.56  Aligned_cols=38  Identities=29%  Similarity=0.748  Sum_probs=33.2

Q ss_pred             cccccccccCc-eecCCCccccHHHHHHHHhcCCCCCCCC
Q 005598          103 CPLSLELMTDP-VIVASGQTYERAFIKKWIDLGLFVCPKT  141 (689)
Q Consensus       103 CpI~~~lm~dP-V~~~~G~ty~r~~I~~~l~~~~~~cP~t  141 (689)
                      ||||++.+.|| |+++|||+||+.||++|++. ...||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            89999999999 57899999999999999998 5779987

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=3.3e-06  Score=95.75  Aligned_cols=258  Identities=18%  Similarity=0.241  Sum_probs=198.8

Q ss_pred             hhHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCc-
Q 005598          403 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSINDN-  478 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s--~~~~v~~~Al~aL~nLs~~~~-  478 (689)
                      ..+|+.|+..+.+. -.+.++.|+..|..+++   ..|..++. -|++.|+..|+.  .|+++...++.+++++..+++ 
T Consensus        21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            36899999998854 56778999999999988   56776654 567888888876  478999999999999865442 


Q ss_pred             ------cH----------HHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHhccc--CchhHHHHHhh-CChHHHHHhhc
Q 005598          479 ------NK----------SAIA-NANAIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIGRS-GAIGPLVDLLG  538 (689)
Q Consensus       479 ------~k----------~~i~-~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~--~~~~k~~I~~~-g~I~~Lv~LL~  538 (689)
                            .+          +.++ ..+.|..|+..+..-+-.+|..++..|.+|-.  ..+.+..+... -+|..|+++|.
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~  176 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR  176 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence                  12          2233 34889999999999999999999999999865  34556666554 88999999999


Q ss_pred             CCCHHHHHHHHHHHHhhhhchHHHHHHHH-hCcHHHHHHhcCC-----ChHHHHHHHHHHHHHhC-CchhHHHHHhcCcH
Q 005598          539 NGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMDP-----AAGMVDKAVAVLANLAT-IPDGRVAIGQENGI  611 (689)
Q Consensus       539 ~~~~~v~~~Al~aL~nLs~~~~n~~~lv~-~G~v~~Lv~LL~~-----~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v  611 (689)
                      +....++..++..|..|+....+.+++|. .+++..|+.++..     ..-+++.|+.+|-||-. +..++..+.+.+.|
T Consensus       177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i  256 (970)
T KOG0946|consen  177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI  256 (970)
T ss_pred             hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence            99999999999999999998888888777 8999999999932     23578999999999988 56678888888889


Q ss_pred             HHHHHHhcc---CCH-------H---HHHHHHHHHHHHhhCCH------hhHHHHHhCCChHHHHHhhhcCC
Q 005598          612 PVLVEVVEL---GSA-------R---GKENAAAALLQLCTNSS------RFCSMVLQEGAVPPLVALSQSGT  664 (689)
Q Consensus       612 ~~Lv~lL~s---~s~-------~---~~e~Av~aL~~L~~~~~------~~~~~lv~~g~i~~L~~LL~~~~  664 (689)
                      |.|.++|.-   ++.       .   ....|..++..+..-+.      .++..+.+.+++..|+.++.+..
T Consensus       257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~  328 (970)
T KOG0946|consen  257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG  328 (970)
T ss_pred             HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC
Confidence            999988842   221       1   12334555555554321      24456678899999999887763

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.72  E-value=1.7e-06  Score=105.42  Aligned_cols=232  Identities=21%  Similarity=0.176  Sum_probs=125.4

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc----
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN----  478 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~----  478 (689)
                      ...+..|+..|.+.++.++..|+..|..+..           .++++.|+.+|..++..|+..|+.+|..+.....    
T Consensus       620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~  688 (897)
T PRK13800        620 APSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPA  688 (897)
T ss_pred             chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHH
Confidence            4567899999999999999999999987642           3478888899988889999988888877632110    


Q ss_pred             -----------cHHHHHH------cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCC
Q 005598          479 -----------NKSAIAN------ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGT  541 (689)
Q Consensus       479 -----------~k~~i~~------~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~  541 (689)
                                 .|...++      .+....|+..|++.++.+|..|+.+|..+             +..+.|..++.+.+
T Consensus       689 L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~-------------~~~~~l~~~l~D~~  755 (897)
T PRK13800        689 LRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSV-------------DDVESVAGAATDEN  755 (897)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcc-------------cCcHHHHHHhcCCC
Confidence                       0111110      01223344444444444444444444432             12233444444444


Q ss_pred             HHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCch---------------hHHHH
Q 005598          542 PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD---------------GRVAI  605 (689)
Q Consensus       542 ~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e---------------~r~~i  605 (689)
                      ..++..++.+|..+...        ....++.|+.++ +++..+...|+..|..+.....               .|...
T Consensus       756 ~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~A  827 (897)
T PRK13800        756 REVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGA  827 (897)
T ss_pred             HHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHH
Confidence            45555444444443221        011245555555 4445555555555554432110               01100


Q ss_pred             H-------hcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHH
Q 005598          606 G-------QENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS  676 (689)
Q Consensus       606 ~-------~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~  676 (689)
                      +       ....++.|+.+|...+..++..|+.+|..+ ..++         ...+.|...+...+..+|+.|...|.
T Consensus       828 a~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~-~~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        828 ARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRW-PGDP---------AARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhcc-CCCH---------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            0       112346666666666666666666666554 1111         13445556666666667766666654

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.61  E-value=5.7e-06  Score=88.56  Aligned_cols=269  Identities=14%  Similarity=0.113  Sum_probs=196.8

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhccCcccH---HHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCccHHH
Q 005598          407 RKLVEDLKSTSLDTQREATAELRLLAKHNMDNR---MVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSA  482 (689)
Q Consensus       407 ~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr---~~i~~~g~I~~Lv~lL~s-~~~~v~~~Al~aL~nLs~~~~~k~~  482 (689)
                      ...+.+|..++.-....+.+.|..++.-....-   ..-..   ...|..++++ .+.+....++.+|-.+...++.|-.
T Consensus       117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~  193 (442)
T KOG2759|consen  117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYA  193 (442)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhe
Confidence            456777777887777777888888876432221   11111   2223334444 5666777888899888888999999


Q ss_pred             HHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhch
Q 005598          483 IANANAIEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYH  559 (689)
Q Consensus       483 i~~~g~l~~Lv~lL~s--~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~  559 (689)
                      +...+++..++.+|.+  .+..++.+...++|-|+.++...+.+...+.|+.|.+++++. ...+.+-++.++.|+....
T Consensus       194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~  273 (442)
T KOG2759|consen  194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG  273 (442)
T ss_pred             eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999843  468899999999999999988887775569999999999977 4788999999999998865


Q ss_pred             -------HHHHHHHHhCcHHHHHHhcC---CChHHHHHHH-------HHHHHHhCCchh---------------------
Q 005598          560 -------ENKARIVQAGAVKHLVDLMD---PAAGMVDKAV-------AVLANLATIPDG---------------------  601 (689)
Q Consensus       560 -------~n~~~lv~~G~v~~Lv~LL~---~~~~v~e~Al-------~~L~nLa~~~e~---------------------  601 (689)
                             .....|+..++.+.+-.|..   ++.++++..-       .....|++..+.                     
T Consensus       274 ~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW  353 (442)
T KOG2759|consen  274 PDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFW  353 (442)
T ss_pred             chhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchH
Confidence                   34456666666665544441   3444433221       112223332222                     


Q ss_pred             ---HHHHHhc--CcHHHHHHHhccC-CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHH
Q 005598          602 ---RVAIGQE--NGIPVLVEVVELG-SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL  675 (689)
Q Consensus       602 ---r~~i~~~--g~v~~Lv~lL~s~-s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL  675 (689)
                         ...+-+.  ..+..|+++|+.. +|..--.|+.=+....+..|+.+..+.+.||=+.+++|+.+.++++|-.|..++
T Consensus       354 ~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlav  433 (442)
T KOG2759|consen  354 RENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAV  433 (442)
T ss_pred             HHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHH
Confidence               2222233  3578999999865 588888999999999999999999999999999999999999999999998877


Q ss_pred             HHh
Q 005598          676 SYF  678 (689)
Q Consensus       676 ~~L  678 (689)
                      ..|
T Consensus       434 Q~l  436 (442)
T KOG2759|consen  434 QKL  436 (442)
T ss_pred             HHH
Confidence            655

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.61  E-value=2e-08  Score=74.27  Aligned_cols=36  Identities=25%  Similarity=0.728  Sum_probs=23.4

Q ss_pred             cccccccccC----ceecCCCccccHHHHHHHHhcC---CCCCC
Q 005598          103 CPLSLELMTD----PVIVASGQTYERAFIKKWIDLG---LFVCP  139 (689)
Q Consensus       103 CpI~~~lm~d----PV~~~~G~ty~r~~I~~~l~~~---~~~cP  139 (689)
                      ||||.+ |.+    |++++|||+||+.||++++..+   ...||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 999    9999999999999999999864   23477

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.59  E-value=5.9e-06  Score=100.65  Aligned_cols=203  Identities=22%  Similarity=0.222  Sum_probs=115.0

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc--------------CcccHHHHHh------cCcHHHHHHhhcCCCHHH
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKH--------------NMDNRMVIAN------CGAINILVDMLHSSETKI  462 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~--------------s~~nr~~i~~------~g~I~~Lv~lL~s~~~~v  462 (689)
                      ...++.|+..|++.++.++..|+..|..+...              ++..|...++      .+....|+..|...++.+
T Consensus       651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~V  730 (897)
T PRK13800        651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRV  730 (897)
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHH
Confidence            55678999999999999999998888776421              1111211111      022334444555555555


Q ss_pred             HHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCH
Q 005598          463 QENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTP  542 (689)
Q Consensus       463 ~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~  542 (689)
                      +..|+.+|..+             +..+.|+.+|.+.+..+|..++.+|..+...        ....++.|..++++.++
T Consensus       731 R~~Av~aL~~~-------------~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~  789 (897)
T PRK13800        731 RIEAVRALVSV-------------DDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDP  789 (897)
T ss_pred             HHHHHHHHhcc-------------cCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCH
Confidence            55555555433             2334455566666666666666666655321        01224445555555555


Q ss_pred             HHHHHHHHHHHhhhhchHH---------------HHHH-------HHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCc
Q 005598          543 RGKKDAATALFNLSIYHEN---------------KARI-------VQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP  599 (689)
Q Consensus       543 ~v~~~Al~aL~nLs~~~~n---------------~~~l-------v~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~  599 (689)
                      .++..|+.+|..+......               |...       -....++.|+.+| +++..+...|+.+|..+...+
T Consensus       790 ~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~  869 (897)
T PRK13800        790 LVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPGDP  869 (897)
T ss_pred             HHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccCCCH
Confidence            5555555555443221100               0000       0123557777777 566777777777777752211


Q ss_pred             hhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 005598          600 DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ  635 (689)
Q Consensus       600 e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~  635 (689)
                               ...+.|...+...+..++..|+.+|..
T Consensus       870 ---------~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        870 ---------AARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             ---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence                     246778888888899999999988853

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.59  E-value=5.4e-07  Score=82.19  Aligned_cols=121  Identities=21%  Similarity=0.274  Sum_probs=108.6

Q ss_pred             hHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 005598          404 TQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA  482 (689)
Q Consensus       404 ~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~  482 (689)
                      +.++.||...+ ..+.+.+.+.+..|.+++. +|.|...+.+.+++..++..|...+..+.+.++..|+|+|.++.++..
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~   94 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF   94 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence            68889998887 4688899999999999999 679999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCch-hHHHHH
Q 005598          483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIG  525 (689)
Q Consensus       483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~-~k~~I~  525 (689)
                      |.+.++++.++..|.++...+...|+.++..|+.... .+..+.
T Consensus        95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell  138 (173)
T KOG4646|consen   95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELL  138 (173)
T ss_pred             HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhc
Confidence            9999999999999999999999999999999876443 344443

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=2.6e-08  Score=98.37  Aligned_cols=57  Identities=25%  Similarity=0.565  Sum_probs=51.1

Q ss_pred             CccccccccccccCceecCCCccccHHHHHHHHhcCC--CCCCCCCCcCCCCCCCccHH
Q 005598           99 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGL--FVCPKTRQTLAHTTLIPNYT  155 (689)
Q Consensus        99 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~--~~cP~t~~~l~~~~l~pn~~  155 (689)
                      ..|-|-||+++-+|||++.|||-||=.||.+|++...  ..||+|+..++.+.++|-+.
T Consensus        46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG  104 (230)
T KOG0823|consen   46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG  104 (230)
T ss_pred             CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence            3699999999999999999999999999999998533  34899999999999999763

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=4.7e-06  Score=88.02  Aligned_cols=182  Identities=23%  Similarity=0.199  Sum_probs=152.4

Q ss_pred             CCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh-chHHHHHHHHhCcHHHHHHh
Q 005598          499 GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDL  577 (689)
Q Consensus       499 ~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~~n~~~lv~~G~v~~Lv~L  577 (689)
                      .+.+-++.|..-|..++.+-++...+...|++..++.++.+.+..++..|+++|...+. ++..+..+++.|+.+.|+.+
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            35777888888888888888888889899999999999999999999999999999988 45677889999999999999


Q ss_pred             c--CCChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCC
Q 005598          578 M--DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQLCTNSSRFCSMVLQEGA  652 (689)
Q Consensus       578 L--~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s--~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~  652 (689)
                      |  +....+..+|+.++..|.+ ++.+...+...++...|...|.+  .+...+..|+..|..|..........+-..+.
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            9  3455667899999999998 56788999999999999999988  67888999999999999888766665556777


Q ss_pred             hHHHHHhhhcCCHHHHHHHHH-HHHHhhc
Q 005598          653 VPPLVALSQSGTPRAKEKAQA-LLSYFRN  680 (689)
Q Consensus       653 i~~L~~LL~~~~~~vr~~A~~-lL~~L~~  680 (689)
                      ...+..+..+....+++.|.. +|..+..
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            777777888888788887766 4444443

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=4.9e-06  Score=87.90  Aligned_cols=183  Identities=19%  Similarity=0.183  Sum_probs=151.4

Q ss_pred             CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHh
Q 005598          458 SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDL  536 (689)
Q Consensus       458 ~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~L  536 (689)
                      .+.+-++.|+.-|.-++.+-+|...+...|++.+++..|++.+..+|..|+++|...+. ++..+..+.+.|+++.|+..
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            35666778788887777777888889999999999999999999999999999999988 56788889999999999999


Q ss_pred             hcCC-CHHHHHHHHHHHHhhhhc-hHHHHHHHHhCcHHHHHHhc-C--CChHHHHHHHHHHHHHhCCc-hhHHHHHhcCc
Q 005598          537 LGNG-TPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-D--PAAGMVDKAVAVLANLATIP-DGRVAIGQENG  610 (689)
Q Consensus       537 L~~~-~~~v~~~Al~aL~nLs~~-~~n~~~lv~~G~v~~Lv~LL-~--~~~~v~e~Al~~L~nLa~~~-e~r~~i~~~g~  610 (689)
                      |... +..++..|+.|+.+|-.+ ......+...++...|..++ .  .+...+..++.++..|.... ..+..+...+.
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            9865 567889999999999984 56788899999999999999 3  45667789999999988744 34444455666


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhhCC
Q 005598          611 IPVLVEVVELGSARGKENAAAALLQLCTNS  640 (689)
Q Consensus       611 v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~  640 (689)
                      ...++.+....+..+.+.|+.++..+...-
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~  284 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLSEL  284 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence            667777777788999999999988876543

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.53  E-value=6.5e-08  Score=71.11  Aligned_cols=39  Identities=36%  Similarity=0.941  Sum_probs=35.7

Q ss_pred             cccccccccCce-ecCCCccccHHHHHHHHh-cCCCCCCCC
Q 005598          103 CPLSLELMTDPV-IVASGQTYERAFIKKWID-LGLFVCPKT  141 (689)
Q Consensus       103 CpI~~~lm~dPV-~~~~G~ty~r~~I~~~l~-~~~~~cP~t  141 (689)
                      ||||++.+.+|+ +++|||+||+.||.+|+. .+...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 899999999999999999 555669987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.52  E-value=1.6e-07  Score=95.24  Aligned_cols=49  Identities=18%  Similarity=0.378  Sum_probs=41.6

Q ss_pred             CCCccccccccccccCc--------eecCCCccccHHHHHHHHhcCCCCCCCCCCcCC
Q 005598           97 IPSDFCCPLSLELMTDP--------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA  146 (689)
Q Consensus        97 ~p~~f~CpI~~~lm~dP--------V~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~  146 (689)
                      ...+..||||++.+.+|        |+++|||+||+.||.+|+... .+||+||.++.
T Consensus       171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~-~tCPlCR~~~~  227 (238)
T PHA02929        171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK-NTCPVCRTPFI  227 (238)
T ss_pred             CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC-CCCCCCCCEee
Confidence            45678999999987764        567899999999999999864 67999999875

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.51  E-value=3.2e-08  Score=78.20  Aligned_cols=58  Identities=16%  Similarity=0.348  Sum_probs=33.8

Q ss_pred             ccccccccccccCcee-cCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHH
Q 005598          100 DFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALI  160 (689)
Q Consensus       100 ~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i  160 (689)
                      -+.|++|.++|++||. ..|.|+||+.||.+.+..   .||+|+.|-...++.-|+.|-++|
T Consensus         7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred             hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence            3789999999999996 589999999999886654   399999999999999999998876

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.51  E-value=4.8e-08  Score=100.25  Aligned_cols=65  Identities=18%  Similarity=0.366  Sum_probs=59.5

Q ss_pred             CccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHHHHHH
Q 005598           99 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWC  164 (689)
Q Consensus        99 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~  164 (689)
                      +-++|-||.+.|+-||++|||||||--||..||... ..||.|..+++...|.-|+-|-.+|+.|.
T Consensus        22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~-p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~   86 (442)
T KOG0287|consen   22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK-PQCPTCCVTVTESDLRNNRILDEIVKSLN   86 (442)
T ss_pred             HHHHHhHHHHHhcCceeccccchHHHHHHHHHhccC-CCCCceecccchhhhhhhhHHHHHHHHHH
Confidence            458999999999999999999999999999999876 55999999999999999999988888763

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.48  E-value=9.8e-06  Score=92.79  Aligned_cols=253  Identities=19%  Similarity=0.197  Sum_probs=171.5

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccHHH
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSA  482 (689)
Q Consensus       404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k~~  482 (689)
                      ..+..+.+.|.++++.++..|++.|.+++.  ++..     ...++.+..+|.++++.|+..|+.++..+... ++   .
T Consensus        79 l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~-----~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~  148 (526)
T PF01602_consen   79 LIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMA-----EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---L  148 (526)
T ss_dssp             HHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHH-----HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---C
T ss_pred             HHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchh-----hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---H
Confidence            467888899999999999999999999873  2221     13578888999999999999999999998632 22   1


Q ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHH
Q 005598          483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK  562 (689)
Q Consensus       483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~  562 (689)
                      +... .++.+..+|.+.++.++..|+.++..+...++.... .-...+..|.+++...++-.+...+.+|..++......
T Consensus       149 ~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~  226 (526)
T PF01602_consen  149 VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKS-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED  226 (526)
T ss_dssp             HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTT-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH
T ss_pred             HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhh-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh
Confidence            2222 588899999999999999999999998111111111 11244566666667788888888999988887744322


Q ss_pred             HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH
Q 005598          563 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS  641 (689)
Q Consensus       563 ~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~  641 (689)
                      ..-  ...++.+..++ +....++-.|+.++..+.....     .-..+++.|+++|.+.++.++..++..|..++...+
T Consensus       227 ~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~  299 (526)
T PF01602_consen  227 ADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP  299 (526)
T ss_dssp             HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH
T ss_pred             hhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc
Confidence            210  45666677666 4455666777777777766554     333466788888887788888888888888887662


Q ss_pred             hhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598          642 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       642 ~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~  680 (689)
                         ..+ . .....+..+..+.+..+|.+|..+|..+.+
T Consensus       300 ---~~v-~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~  333 (526)
T PF01602_consen  300 ---PAV-F-NQSLILFFLLYDDDPSIRKKALDLLYKLAN  333 (526)
T ss_dssp             ---HHH-G-THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred             ---hhh-h-hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence               122 2 222223333336667788887777766654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.47  E-value=1.1e-07  Score=73.08  Aligned_cols=47  Identities=23%  Similarity=0.446  Sum_probs=40.5

Q ss_pred             CccccccccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCCcCC
Q 005598           99 SDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLA  146 (689)
Q Consensus        99 ~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~l~~~~~~cP~t~~~l~  146 (689)
                      +++.|+||++-+.+++++||||. ||..|+.+|+.. ...||+||++++
T Consensus         1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence            46789999999999999999999 999999999994 467999999875

...

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=7.3e-08  Score=91.20  Aligned_cols=51  Identities=24%  Similarity=0.551  Sum_probs=44.6

Q ss_pred             cccccccccccC--ceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCc
Q 005598          101 FCCPLSLELMTD--PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP  152 (689)
Q Consensus       101 f~CpI~~~lm~d--PV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~p  152 (689)
                      |.||||++-+..  ||.+.|||.||+.||++.+..+ .+||.|++.++++++.+
T Consensus       132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkIt~k~~~r  184 (187)
T KOG0320|consen  132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKITHKQFHR  184 (187)
T ss_pred             cCCCceecchhhccccccccchhHHHHHHHHHHHhC-CCCCCcccccchhhhee
Confidence            999999988765  5558999999999999999976 56999999999887765

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=8.3e-05  Score=76.88  Aligned_cols=271  Identities=17%  Similarity=0.181  Sum_probs=186.6

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHh-cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA  482 (689)
Q Consensus       404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~-~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~  482 (689)
                      .....+++++.+.+|.++..|+..+..|+..  ..+..... .-.++.|.+++....+  .+.|+.+|.|++.++..+..
T Consensus         3 s~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~   78 (353)
T KOG2973|consen    3 SELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKK   78 (353)
T ss_pred             hHHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHH
Confidence            4567899999999999999999999988875  33433332 3568888888876555  67899999999999888888


Q ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHh-------hCChHHHHHhhcCC-CH-HHHHHHHHHHH
Q 005598          483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR-------SGAIGPLVDLLGNG-TP-RGKKDAATALF  553 (689)
Q Consensus       483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~-------~g~I~~Lv~LL~~~-~~-~v~~~Al~aL~  553 (689)
                      +.+. .++.+++++-++.......++.+|.||+..++....+..       .|.+...+.....+ +. .-....+..+.
T Consensus        79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~  157 (353)
T KOG2973|consen   79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA  157 (353)
T ss_pred             HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence            8777 888888988877666777888999999997775444321       24444444444443 22 23345666888


Q ss_pred             hhhhchHHHHHHHHhCcHHH--HHHhcCCChHHH-HHHHHHHHHHhCCchhHHHHHhcC--cHHHHH-------------
Q 005598          554 NLSIYHENKARIVQAGAVKH--LVDLMDPAAGMV-DKAVAVLANLATIPDGRVAIGQEN--GIPVLV-------------  615 (689)
Q Consensus       554 nLs~~~~n~~~lv~~G~v~~--Lv~LL~~~~~v~-e~Al~~L~nLa~~~e~r~~i~~~g--~v~~Lv-------------  615 (689)
                      ||+.....|..+.....++.  |+.+-+.+..+. ...+++|.|.|........++..+  .+|.|+             
T Consensus       158 nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEd  237 (353)
T KOG2973|consen  158 NLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEED  237 (353)
T ss_pred             HHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHH
Confidence            99999999888877663322  222223233333 357889999988777666665432  233322             


Q ss_pred             --------HHhc-----cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcC-CHHHHHHHHHHHHHhhc
Q 005598          616 --------EVVE-----LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRN  680 (689)
Q Consensus       616 --------~lL~-----s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~-~~~vr~~A~~lL~~L~~  680 (689)
                              ++|-     ..++.++..-+.+|..||.... .++.+..-|+.+.|..+-... ++.+++.+-.+..++-+
T Consensus       238 m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  238 MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence                    2221     2467788889999999998765 666776666666666654433 57888888888888766

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=5.8e-06  Score=94.40  Aligned_cols=213  Identities=16%  Similarity=0.163  Sum_probs=171.7

Q ss_pred             hhhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCcc
Q 005598          402 IETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQENAVTALLNLSINDNN  479 (689)
Q Consensus       402 ~~~~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL-~s~~~~v~~~Al~aL~nLs~~~~~  479 (689)
                      ++.+|+.|+.+|+. .+.+++..|+++|..|+..-|.....+++.++||.|+.-| .-...+|.|+++.+|..|+...  
T Consensus       209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--  286 (1051)
T KOG0168|consen  209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--  286 (1051)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--
Confidence            46799999999996 5899999999999999998888889999999999998755 4467889999999999997432  


Q ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccC---chhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhh
Q 005598          480 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI---EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS  556 (689)
Q Consensus       480 k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~---~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs  556 (689)
                      -..+.+.|++-..+..|.--+..++..|+++..|+|..   ++... +  ..++|.|..+|...+.+..+.++.++..++
T Consensus       287 ~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~-v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~  363 (1051)
T KOG0168|consen  287 PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHF-V--MEALPLLTPLLSYQDKKPIESVCICLTRIA  363 (1051)
T ss_pred             cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchH-H--HHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence            35678899999999999877888999999999998762   22222 2  257899999999999999999988888886


Q ss_pred             h----chHHHHHHHHhCcHHHHHHhcCCC-----hHHHHHHHHHHHHHhCC-chhHHHHHhcCcHHHHHHHhc
Q 005598          557 I----YHENKARIVQAGAVKHLVDLMDPA-----AGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVE  619 (689)
Q Consensus       557 ~----~~~n~~~lv~~G~v~~Lv~LL~~~-----~~v~e~Al~~L~nLa~~-~e~r~~i~~~g~v~~Lv~lL~  619 (689)
                      .    .++--+++...|.+.....||.-.     ..+....+..|..+|.. +.....+...++...|..+|.
T Consensus       364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~  436 (1051)
T KOG0168|consen  364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ  436 (1051)
T ss_pred             HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence            6    233446788899999999988322     23445667778888874 777888888888888888875

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=1.5e-07  Score=99.28  Aligned_cols=71  Identities=25%  Similarity=0.583  Sum_probs=61.1

Q ss_pred             CCCccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCC
Q 005598           97 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVK  170 (689)
Q Consensus        97 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~~  170 (689)
                      ..+++.||||++.|++|++++|||+||+.||..++. ....||.|+. ... .+.+|..+.++++.+...+...
T Consensus        10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~~~   80 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRLSR   80 (386)
T ss_pred             ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCCcc
Confidence            457899999999999999999999999999999999 5567999996 322 7889999999999988766543

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.43  E-value=4.7e-05  Score=84.01  Aligned_cols=216  Identities=13%  Similarity=0.129  Sum_probs=160.1

Q ss_pred             hhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCcccHHHHHhc-----CcHHHHHHhhcCCCHHHHHHHHHHHHHhhc-
Q 005598          403 ETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANC-----GAINILVDMLHSSETKIQENAVTALLNLSI-  475 (689)
Q Consensus       403 ~~~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-----g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~-  475 (689)
                      ...+..++..|+. .+.+.....+..+..+...++..-..|.+.     +....++.+|..++.-++..++.+|..|.. 
T Consensus        52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence            4677788888874 566777778888888888765544555543     466778889988888899999999988853 


Q ss_pred             CCccHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCC--CHHHHHHHHHHH
Q 005598          476 NDNNKSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDAATAL  552 (689)
Q Consensus       476 ~~~~k~~i~~~g~l~~Lv~lL~s~-~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~--~~~v~~~Al~aL  552 (689)
                      +..........-.+..|...|+++ +...+..++.+|..|...+.+|..+.+.++++.|+.+|+..  ..+....++.++
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l  211 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI  211 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence            222211111111334556666654 36778888899999999999999998888999999999864  468899999999


Q ss_pred             HhhhhchHHHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCch-------hHHHHHhcCcHHHHHHHhc
Q 005598          553 FNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPD-------GRVAIGQENGIPVLVEVVE  619 (689)
Q Consensus       553 ~nLs~~~~n~~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e-------~r~~i~~~g~v~~Lv~lL~  619 (689)
                      +-|+.+++....+...+.++.|++++  .....++.-++.+|.||...+.       ....+++.|..+ +++.|.
T Consensus       212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~  286 (429)
T cd00256         212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLE  286 (429)
T ss_pred             HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHh
Confidence            99999988888888899999999999  4567788999999999998431       223445556555 444443

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.32  E-value=5.1e-05  Score=86.93  Aligned_cols=250  Identities=17%  Similarity=0.190  Sum_probs=153.8

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHh-hcCCccHH
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNL-SINDNNKS  481 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nL-s~~~~~k~  481 (689)
                      ...++.+.+.+.++++.++..|+.++..+.+.++..   +... .++.|..+|...++.++..|+.++..+ ..++... 
T Consensus       113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-  187 (526)
T PF01602_consen  113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-  187 (526)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-
T ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-
Confidence            456788889999999999999999999998866543   3333 689999999889999999999999988 2111101 


Q ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHH
Q 005598          482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN  561 (689)
Q Consensus       482 ~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n  561 (689)
                       -.-...+..|..++...++-.+..++.+|..++........-  ...++.+..+|++.++.+...++.++..+..... 
T Consensus       188 -~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-  263 (526)
T PF01602_consen  188 -SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-  263 (526)
T ss_dssp             -THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-
T ss_pred             -hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-
Confidence             111233445555556777888888888888776543322200  3456777777776677777777777777665444 


Q ss_pred             HHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhc-cCCHHHHHHHHHHHHHHhhC
Q 005598          562 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE-LGSARGKENAAAALLQLCTN  639 (689)
Q Consensus       562 ~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~-s~s~~~~e~Av~aL~~L~~~  639 (689)
                          .-..+++.|+.+| +++..+.-.++..|..++...  ...+ .  .....+..+. +.+..++..++.+|..++..
T Consensus       264 ----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v-~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~  334 (526)
T PF01602_consen  264 ----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAV-F--NQSLILFFLLYDDDPSIRKKALDLLYKLANE  334 (526)
T ss_dssp             ----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHH-G--THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred             ----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhh-h--hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence                4445666777777 445556667777777776643  1111 1  2222233333 56677777777777777643


Q ss_pred             CHhhHHHHHhCCChHHHHHhhh-cCCHHHHHHHHHHHHH
Q 005598          640 SSRFCSMVLQEGAVPPLVALSQ-SGTPRAKEKAQALLSY  677 (689)
Q Consensus       640 ~~~~~~~lv~~g~i~~L~~LL~-~~~~~vr~~A~~lL~~  677 (689)
                      .  +...     +++.|...+. ..++..++.+...+..
T Consensus       335 ~--n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~  366 (526)
T PF01602_consen  335 S--NVKE-----ILDELLKYLSELSDPDFRRELIKAIGD  366 (526)
T ss_dssp             H--HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred             c--chhh-----HHHHHHHHHHhccchhhhhhHHHHHHH
Confidence            2  2222     3444555552 2244455554444333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.31  E-value=3.1e-05  Score=83.42  Aligned_cols=261  Identities=16%  Similarity=0.192  Sum_probs=182.4

Q ss_pred             hhhHHHHHHHHhcCCCHHH--HHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcC-C
Q 005598          402 IETQVRKLVEDLKSTSLDT--QREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSIN-D  477 (689)
Q Consensus       402 ~~~~V~~Lv~~L~s~~~~~--q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~-s~~~~v~~~Al~aL~nLs~~-~  477 (689)
                      ..+.+..|++++.+++.+.  +.+|.+.|-.+..  .+||..++..| +..++.+-+ ...++.+...+.+|.++-.+ +
T Consensus       178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe  254 (832)
T KOG3678|consen  178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE  254 (832)
T ss_pred             ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence            3567889999999887666  6778888877765  37899998876 444444333 24577888899999999765 5


Q ss_pred             ccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccC--chhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhh
Q 005598          478 NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL  555 (689)
Q Consensus       478 ~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~--~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL  555 (689)
                      +....+++.|+++.++--.+..++.+..+++-+|.|++..  ...+..|++..+-+-|.-|-.+.+.-.+..|+.+++-|
T Consensus       255 et~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  255 ETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhh
Confidence            5677888999999998888888899999999999999874  45678888888888888888777888889999999999


Q ss_pred             hhchHHHHHHHHhCcHH---HHHHhcCCChHHHHHHHHHHHHHhCCchhHHHHHhc---CcHHHHHHHhccCCHHHHHHH
Q 005598          556 SIYHENKARIVQAGAVK---HLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQE---NGIPVLVEVVELGSARGKENA  629 (689)
Q Consensus       556 s~~~~n~~~lv~~G~v~---~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~---g~v~~Lv~lL~s~s~~~~e~A  629 (689)
                      +.+.+.-..+.+.|.+.   .|+..+++..            .+.  +. ....+.   .-++.|+.+|++.-.+.+-.+
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~------------FAR--D~-hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~  399 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGR------------FAR--DA-HDYAQGRGPDDLQRLVPLLDSNRLEAQCIG  399 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcch------------hhh--hh-hhhhccCChHHHHHhhhhhhcchhhhhhhH
Confidence            98887666666666443   3333333321            111  00 011111   236788888885544444433


Q ss_pred             HHHHHHHhh-CCHhhHHHHH-hCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598          630 AAALLQLCT-NSSRFCSMVL-QEGAVPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       630 v~aL~~L~~-~~~~~~~~lv-~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~  680 (689)
                      +.-|+.=+. .+......+. +-|+|+.|.++..+.+....+-|.++|..+-.
T Consensus       400 AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  400 AFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE  452 (832)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence            333322111 1223334444 46999999999998887777888899988754

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.29  E-value=3.9e-07  Score=91.86  Aligned_cols=65  Identities=14%  Similarity=0.240  Sum_probs=58.2

Q ss_pred             ccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHHHHHHH
Q 005598          100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCE  165 (689)
Q Consensus       100 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~  165 (689)
                      -++|-||.+.++-|++++||||||.-||.+||... ..||+|+.+.....+.-+.-++..++.|..
T Consensus        25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~q-p~CP~Cr~~~~esrlr~~s~~~ei~es~~~   89 (391)
T COG5432          25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQ-PFCPVCREDPCESRLRGSSGSREINESHAR   89 (391)
T ss_pred             HHHhhhhhheeecceecccccchhHHHHHHHhcCC-CCCccccccHHhhhcccchhHHHHHHhhhh
Confidence            47999999999999999999999999999999876 559999999988888888888888887744

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.27  E-value=3.7e-07  Score=68.22  Aligned_cols=40  Identities=33%  Similarity=0.728  Sum_probs=33.8

Q ss_pred             cccccccccc---CceecCCCccccHHHHHHHHhcCCCCCCCCC
Q 005598          102 CCPLSLELMT---DPVIVASGQTYERAFIKKWIDLGLFVCPKTR  142 (689)
Q Consensus       102 ~CpI~~~lm~---dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~  142 (689)
                      .||||++-|.   .++.++|||.|++.||.+|++.. .+||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCccC
Confidence            4999999984   55668999999999999999985 5799995

...

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.26  E-value=8.8e-07  Score=65.58  Aligned_cols=44  Identities=34%  Similarity=0.804  Sum_probs=38.8

Q ss_pred             ccccccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCCcC
Q 005598          102 CCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTL  145 (689)
Q Consensus       102 ~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~l~~~~~~cP~t~~~l  145 (689)
                      .||||++.+.+|+.+. |||.|++.|+.+|+..+...||.|+..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            4999999999998876 9999999999999998667799998753

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.23  E-value=6.3e-06  Score=75.35  Aligned_cols=153  Identities=19%  Similarity=0.168  Sum_probs=130.7

Q ss_pred             hhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHH
Q 005598          526 RSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV  603 (689)
Q Consensus       526 ~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~  603 (689)
                      ..+.+..||+-+... +.+.+.....-|.|.+.++-|-..+.+..++...+.-| ..+..+++.+++.|+|+|..+.+..
T Consensus        14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~   93 (173)
T KOG4646|consen   14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence            346677777777654 78899999999999999999999999999999999999 5778899999999999999999999


Q ss_pred             HHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 005598          604 AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF  678 (689)
Q Consensus       604 ~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L  678 (689)
                      .|.++++++.++..+.+....+...|+.+|..||-.+...+..+....++..+...-.+...+-+.-|...|...
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~  168 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKH  168 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999988888888877777777776555555555565555443

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=9.3e-07  Score=90.01  Aligned_cols=55  Identities=25%  Similarity=0.502  Sum_probs=47.9

Q ss_pred             CCCC-ccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCC
Q 005598           96 PIPS-DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI  151 (689)
Q Consensus        96 ~~p~-~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~  151 (689)
                      .+|+ .+.|-||++-+.||--+||||.||=+||..|..+. .-||.||+++++..++
T Consensus       234 ~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek-~eCPlCR~~~~pskvi  289 (293)
T KOG0317|consen  234 SIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK-AECPLCREKFQPSKVI  289 (293)
T ss_pred             cCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc-cCCCcccccCCCccee
Confidence            4555 59999999999999999999999999999999876 4499999999886543

>smart00184 RING Ring finger

Probab=98.14  E-value=2.1e-06  Score=61.28  Aligned_cols=39  Identities=41%  Similarity=0.943  Sum_probs=35.8

Q ss_pred             cccccccccCceecCCCccccHHHHHHHHhcCCCCCCCC
Q 005598          103 CPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKT  141 (689)
Q Consensus       103 CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t  141 (689)
                      ||||++...+|++++|||.|+..|+..|+..+...||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            899999999999999999999999999998655679986

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=98.10  E-value=8.7e-07  Score=94.21  Aligned_cols=77  Identities=26%  Similarity=0.424  Sum_probs=61.9

Q ss_pred             cccccccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCCCCCCCCcCC
Q 005598          101 FCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTAS  179 (689)
Q Consensus       101 f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~~~~~~~~~  179 (689)
                      |.|.|++++.++||+-+ +||.|||+.|++|+.+. .+||+|+++|+.++|+|-.           --...-|+|+...+
T Consensus         1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~-G~DPIt~~pLs~eelV~Ik-----------~~~~v~pk~~satS   68 (506)
T KOG0289|consen    1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAET-GKDPITNEPLSIEELVEIK-----------VPAQVRPKPPSATS   68 (506)
T ss_pred             CeecccCCCCCCccccccccchHHHHHHHHHHHHc-CCCCCCCCcCCHHHeeecc-----------ccccccCCCCCccc
Confidence            57999999999999965 99999999999999976 5599999999999988852           11223466665555


Q ss_pred             CCCCCCcccccC
Q 005598          180 LNQPSPLFVHAD  191 (689)
Q Consensus       180 ~~~~~~~~~~~~  191 (689)
                      +  |..|.++||
T Consensus        69 I--PalL~~lQd   78 (506)
T KOG0289|consen   69 I--PALLKTLQD   78 (506)
T ss_pred             h--HHHHHHHHH
Confidence            4  777888888

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.09  E-value=0.00013  Score=81.93  Aligned_cols=274  Identities=13%  Similarity=0.090  Sum_probs=173.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhccCcc----cHH-HHHhcC--cHHHHHHhhcCCCHHHH--HHHHHHHHHhh-cCC
Q 005598          408 KLVEDLKSTSLDTQREATAELRLLAKHNMD----NRM-VIANCG--AINILVDMLHSSETKIQ--ENAVTALLNLS-IND  477 (689)
Q Consensus       408 ~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~----nr~-~i~~~g--~I~~Lv~lL~s~~~~v~--~~Al~aL~nLs-~~~  477 (689)
                      .+-+++++++...+..++.+|..+...+..    .+. .+.+.|  .+-..-.+.-..++-+.  ..++.+.+-++ .-.
T Consensus       236 ~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~s  315 (678)
T KOG1293|consen  236 VVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFAS  315 (678)
T ss_pred             hhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHH
Confidence            455666677777888888888877665411    111 122222  11111111111222221  11222222222 112


Q ss_pred             ccHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHhccc-----CchhHHHHHhhCChHHHHHhhcCCCHHHHH
Q 005598          478 NNKSAIANANAIEPLIHVLQT------GSPEARENAAATLFSLSV-----IEDNKIKIGRSGAIGPLVDLLGNGTPRGKK  546 (689)
Q Consensus       478 ~~k~~i~~~g~l~~Lv~lL~s------~~~~~~~~Aa~aL~nLs~-----~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~  546 (689)
                      ..+....+...++.++++|..      +.++.+.-++.-...+..     .-.++..+.+.-....+..+....+.....
T Consensus       316 klq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~a  395 (678)
T KOG1293|consen  316 KLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVA  395 (678)
T ss_pred             hhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHH
Confidence            334444555677777777653      233333333322222211     122344454445555555555566788888


Q ss_pred             HHHHHHHhhhhch-HHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhccCCH
Q 005598          547 DAATALFNLSIYH-ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSA  623 (689)
Q Consensus       547 ~Al~aL~nLs~~~-~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s~s~  623 (689)
                      +|+.++.+++..- .-+..+-...+...|++++ +++..+...++++|.||.. ...-+..++..|+|..+..++...+.
T Consensus       396 aa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~  475 (678)
T KOG1293|consen  396 AALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDF  475 (678)
T ss_pred             HHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCc
Confidence            8888888887633 2233345577899999999 6777788899999999987 66779999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCHhhHHHH-HhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 005598          624 RGKENAAAALLQLCTNSSRFCSMV-LQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ  681 (689)
Q Consensus       624 ~~~e~Av~aL~~L~~~~~~~~~~l-v~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~  681 (689)
                      ..+..+.++|+++..++....... ..-=....|..+..+.+..+++.+-.+||+|...
T Consensus       476 n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  476 NSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             hHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            999999999999999886433333 3333456778888888999999999999999864

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=0.00011  Score=76.06  Aligned_cols=234  Identities=21%  Similarity=0.237  Sum_probs=163.2

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhh
Q 005598          449 NILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS  527 (689)
Q Consensus       449 ~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~-~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~  527 (689)
                      .-|+.+|.+.++.|+..|+..|..|+.. ..+..... ...++.+.+++....+  .+.|+.+|.|++.....+..+...
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~   82 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD   82 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence            3578899999999999999999888755 33333332 3577888898876655  678899999999999888888777


Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHH-------hCcHHHHHHhcCCCh---HHHHHHHHHHHHHhC
Q 005598          528 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ-------AGAVKHLVDLMDPAA---GMVDKAVAVLANLAT  597 (689)
Q Consensus       528 g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~-------~G~v~~Lv~LL~~~~---~v~e~Al~~L~nLa~  597 (689)
                       .++.++.++.+.........+.+|.||+..+.....+..       .|.+.....+++.+.   .-.....-+++||+.
T Consensus        83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~  161 (353)
T KOG2973|consen   83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ  161 (353)
T ss_pred             -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence             899999999988778888899999999997765544432       334444444444322   223566778999999


Q ss_pred             CchhHHHHHhcCcH--HHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHh-CCChHHHH-----------------
Q 005598          598 IPDGRVAIGQENGI--PVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLV-----------------  657 (689)
Q Consensus       598 ~~e~r~~i~~~g~v--~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~-~g~i~~L~-----------------  657 (689)
                      ...||..+.+...+  ..++.+-..++.--+...+++|.|+|.....+-..+.. .+.++.|+                 
T Consensus       162 ~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~L  241 (353)
T KOG2973|consen  162 FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKL  241 (353)
T ss_pred             hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcC
Confidence            99999999876642  33443333345555667888999999877633332221 12233222                 


Q ss_pred             ----Hhhh-----cCCHHHHHHHHHHHHHhhcCcCCCC
Q 005598          658 ----ALSQ-----SGTPRAKEKAQALLSYFRNQRHGNA  686 (689)
Q Consensus       658 ----~LL~-----~~~~~vr~~A~~lL~~L~~~~~~~~  686 (689)
                          +++.     ..++.++.+-.++|-+|+..+.||+
T Consensus       242 P~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe  279 (353)
T KOG2973|consen  242 PVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGRE  279 (353)
T ss_pred             CHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHH
Confidence                2222     1246789999999999998888874

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.07  E-value=5e-06  Score=86.84  Aligned_cols=65  Identities=20%  Similarity=0.290  Sum_probs=49.7

Q ss_pred             Cccccccccc-cccCce----ecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCC----CCccHHHHHHHHHH
Q 005598           99 SDFCCPLSLE-LMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT----LIPNYTVKALIANW  163 (689)
Q Consensus        99 ~~f~CpI~~~-lm~dPV----~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~----l~pn~~l~~~i~~~  163 (689)
                      ++..||+|.. ....|=    +.+|||+||++||.++|..+...||.|+.++....    +.++..+.+.|.--
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~iR   75 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDIR   75 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHHH
Confidence            5678999997 244553    23799999999999999887778999999998766    55666666665543

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PHA02926 zinc finger-like protein; Provisional

Probab=98.02  E-value=3.6e-06  Score=82.74  Aligned_cols=50  Identities=14%  Similarity=0.307  Sum_probs=41.0

Q ss_pred             CCCccccccccccccC---------ceecCCCccccHHHHHHHHhcC-----CCCCCCCCCcCC
Q 005598           97 IPSDFCCPLSLELMTD---------PVIVASGQTYERAFIKKWIDLG-----LFVCPKTRQTLA  146 (689)
Q Consensus        97 ~p~~f~CpI~~~lm~d---------PV~~~~G~ty~r~~I~~~l~~~-----~~~cP~t~~~l~  146 (689)
                      ...+..|+||++...+         +++.+|||+||..||.+|....     ...||.||+.+.
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            4667899999998644         4677999999999999999753     235999999876

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.00037  Score=82.95  Aligned_cols=233  Identities=17%  Similarity=0.157  Sum_probs=155.4

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccHHH
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSA  482 (689)
Q Consensus       404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k~~  482 (689)
                      ..++.+-.+|+|.++..+..|+..|..++.+..+.-.... ..+++..+..|+.+++.|+..|+.+++.++.+ ...-..
T Consensus       348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk  426 (1075)
T KOG2171|consen  348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK  426 (1075)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence            4567778888999999999999999999886543322211 25788888999999999999999999999865 233333


Q ss_pred             HHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHhcccCchhHHHHH--hhCChHHHHH-hhcCCCHHHHHHHHHHHHhhhhc
Q 005598          483 IANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIG--RSGAIGPLVD-LLGNGTPRGKKDAATALFNLSIY  558 (689)
Q Consensus       483 i~~~g~l~~Lv~lL~s~-~~~~~~~Aa~aL~nLs~~~~~k~~I~--~~g~I~~Lv~-LL~~~~~~v~~~Al~aL~nLs~~  558 (689)
                      -...-.++.|+..+.+. ++.++.+|+.+|.|++..-. +..|.  -.+.+..++. ++.++.+.++..++.+|...+..
T Consensus       427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A  505 (1075)
T KOG2171|consen  427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA  505 (1075)
T ss_pred             HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence            44456777888888764 68999999999999875322 12222  2356663444 45567899999999999998875


Q ss_pred             hHHHHHHHHhCcHHHHHHhcC--CChHHHHH---HHHHHHHHhCCchhHHHHHhc--CcHHHHHHH---hccCCHHHHHH
Q 005598          559 HENKARIVQAGAVKHLVDLMD--PAAGMVDK---AVAVLANLATIPDGRVAIGQE--NGIPVLVEV---VELGSARGKEN  628 (689)
Q Consensus       559 ~~n~~~lv~~G~v~~Lv~LL~--~~~~v~e~---Al~~L~nLa~~~e~r~~i~~~--g~v~~Lv~l---L~s~s~~~~e~  628 (689)
                      .+..-.-.-...++.|.++|.  .+++..+.   .+.++..++. .-|++.+...  ..+..++.+   ....+...+.+
T Consensus       506 A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~-AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy  584 (1075)
T KOG2171|consen  506 AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIAR-AVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSY  584 (1075)
T ss_pred             HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHH-HhhhhhhhHhHHHHHHHHHhhcccchhhccccHHH
Confidence            555444444678888888882  22333333   3333333332 4455555432  235555555   23345556667


Q ss_pred             HHHHHHHHhhC
Q 005598          629 AAAALLQLCTN  639 (689)
Q Consensus       629 Av~aL~~L~~~  639 (689)
                      -.....++|+.
T Consensus       585 ~~~~warmc~i  595 (1075)
T KOG2171|consen  585 MIAFWARMCRI  595 (1075)
T ss_pred             HHHHHHHHHHH
Confidence            77777777764

>PTZ00429 beta-adaptin; Provisional

Probab=98.00  E-value=0.00089  Score=79.24  Aligned_cols=258  Identities=16%  Similarity=0.115  Sum_probs=168.1

Q ss_pred             hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 005598          402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS  481 (689)
Q Consensus       402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~  481 (689)
                      +......+++.+.+.+.+.++-+--.|..++...++..  +   -++..|.+=+.+.++.++-.|++.|.++-.. +   
T Consensus        66 vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela--l---LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~-~---  136 (746)
T PTZ00429         66 VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA--L---LAVNTFLQDTTNSSPVVRALAVRTMMCIRVS-S---  136 (746)
T ss_pred             chHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH--H---HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-H---
Confidence            35677888889989998888877777777777544321  1   2467777777888999999999998876421 1   


Q ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHH
Q 005598          482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN  561 (689)
Q Consensus       482 ~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n  561 (689)
                        +-.-.+..+.+.|.+.++.+|..|+-++..+-..+.  ..+...|.++.|.++|.+.++.+..+|+.+|..+......
T Consensus       137 --i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~  212 (746)
T PTZ00429        137 --VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE  212 (746)
T ss_pred             --HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch
Confidence              112345667788889999999999999999854222  2334558899999999999999999999999999765433


Q ss_pred             HHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCC
Q 005598          562 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS  640 (689)
Q Consensus       562 ~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~  640 (689)
                      .. -...+.+..|+..| +-+.-.+-..+.+|...  .+......  ...+..+...|++.++.+...|+.+++++....
T Consensus       213 ~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~  287 (746)
T PTZ00429        213 KI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC  287 (746)
T ss_pred             hh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC
Confidence            22 23355566666666 22222233344444321  22221111  245677788888889999999999999887653


Q ss_pred             -HhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 005598          641 -SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR  679 (689)
Q Consensus       641 -~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~  679 (689)
                       +.....+.. ....+|+.|+ ++.+.++-.+..-|..+.
T Consensus       288 ~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~  325 (746)
T PTZ00429        288 SQELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALL  325 (746)
T ss_pred             CHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHH
Confidence             222222211 1224555553 445667766665554443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=0.00092  Score=76.55  Aligned_cols=247  Identities=17%  Similarity=0.170  Sum_probs=188.3

Q ss_pred             hHHHHHHHHhcC--CCHHHHHHHHHHHHHhhccCc------ccH-----------HHHHhcCcHHHHHHhhcCCCHHHHH
Q 005598          404 TQVRKLVEDLKS--TSLDTQREATAELRLLAKHNM------DNR-----------MVIANCGAINILVDMLHSSETKIQE  464 (689)
Q Consensus       404 ~~V~~Lv~~L~s--~~~~~q~~Al~~L~~La~~s~------~nr-----------~~i~~~g~I~~Lv~lL~s~~~~v~~  464 (689)
                      ..++.|+.-|+.  .+++....++..+..+..+.+      ..+           .+|...+.|..|+.++...|..|+.
T Consensus        61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~  140 (970)
T KOG0946|consen   61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRL  140 (970)
T ss_pred             cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhh
Confidence            455777777763  578888889999998887652      122           1233458999999999999999999


Q ss_pred             HHHHHHHHhhc--CCccHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHh-hCChHHHHHhhcCC
Q 005598          465 NAVTALLNLSI--NDNNKSAIANA-NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNG  540 (689)
Q Consensus       465 ~Al~aL~nLs~--~~~~k~~i~~~-g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~-~g~I~~Lv~LL~~~  540 (689)
                      .++..|.+|-.  ..+.+..+... -+|..|+.+|.+....+|-.++..|..|..+...-..++. ..++..|+.++...
T Consensus       141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeE  220 (970)
T KOG0946|consen  141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEE  220 (970)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999843  35666666654 7999999999988888999999999999886555555544 59999999999853


Q ss_pred             ---C-HHHHHHHHHHHHhhhhc-hHHHHHHHHhCcHHHHHHhcC----CCh--------HH--HHHHHHHHHHHhCC--c
Q 005598          541 ---T-PRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLMD----PAA--------GM--VDKAVAVLANLATI--P  599 (689)
Q Consensus       541 ---~-~~v~~~Al~aL~nLs~~-~~n~~~lv~~G~v~~Lv~LL~----~~~--------~v--~e~Al~~L~nLa~~--~  599 (689)
                         + .-+...|+..|-||..+ ..|+..+.+.+-++.|.++|.    .+.        .+  +..++.++..|..-  .
T Consensus       221 Gg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt  300 (970)
T KOG0946|consen  221 GGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNT  300 (970)
T ss_pred             CCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCc
Confidence               2 34788899999999985 468888889999999998872    121        12  24577777777651  1


Q ss_pred             -----hhHHHHHhcCcHHHHHHHhccC--CHHHHHHHHHHHHHHhhCCHhhHHHHHhC
Q 005598          600 -----DGRVAIGQENGIPVLVEVVELG--SARGKENAAAALLQLCTNSSRFCSMVLQE  650 (689)
Q Consensus       600 -----e~r~~i~~~g~v~~Lv~lL~s~--s~~~~e~Av~aL~~L~~~~~~~~~~lv~~  650 (689)
                           .++.++...+.+..|..++.+.  ..+++..+.-++.++.+++..++..+...
T Consensus       301 ~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v  358 (970)
T KOG0946|consen  301 SSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADV  358 (970)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhc
Confidence                 1234566778888888888654  67888999999999999999888888763

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.95  E-value=8.3e-06  Score=82.66  Aligned_cols=67  Identities=21%  Similarity=0.341  Sum_probs=59.1

Q ss_pred             cccccccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCCc-CCCCCCCccHHHHHHHHHHHHHc
Q 005598          101 FCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQT-LAHTTLIPNYTVKALIANWCELN  167 (689)
Q Consensus       101 f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~l~~~~~~cP~t~~~-l~~~~l~pn~~l~~~i~~~~~~~  167 (689)
                      +.||+|..|++.|+-+ +|||+||..||+..|......||.|... +-.+.|+|+...+..|+.+.+.+
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq  343 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ  343 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence            9999999999999988 7899999999999998777889999653 45568999999999999998743

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.95  E-value=0.00082  Score=72.39  Aligned_cols=233  Identities=16%  Similarity=0.192  Sum_probs=165.5

Q ss_pred             HHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCccHH
Q 005598          405 QVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSINDNNKS  481 (689)
Q Consensus       405 ~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s--~~~~v~~~Al~aL~nLs~~~~~k~  481 (689)
                      ....|...+++ .+.+-..-|+++|..+.+. ++.|..++..+++..|+..|.+  .+..+|.+.+-+++.|+.++...+
T Consensus       157 ~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae  235 (442)
T KOG2759|consen  157 YKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAE  235 (442)
T ss_pred             HHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHH
Confidence            34455555654 5555666788899999985 4889999999999999998843  467899999999999998888888


Q ss_pred             HHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHhcccCch---hH----HHHHhhCChHHHHHhhcCC---CHHHHHHHH-
Q 005598          482 AIANANAIEPLIHVLQTGS-PEARENAAATLFSLSVIED---NK----IKIGRSGAIGPLVDLLGNG---TPRGKKDAA-  549 (689)
Q Consensus       482 ~i~~~g~l~~Lv~lL~s~~-~~~~~~Aa~aL~nLs~~~~---~k----~~I~~~g~I~~Lv~LL~~~---~~~v~~~Al-  549 (689)
                      .+...+.++.|..+++... ..+..-.++++.|+.....   .+    ..++. +-++..++.|...   +.++....- 
T Consensus       236 ~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkysDEDL~~di~~  314 (442)
T KOG2759|consen  236 KLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERKYSDEDLVDDIEF  314 (442)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcCCCcHHHHHHHHH
Confidence            8877799999999998754 6677788889999876442   22    23333 4445555665532   333322111 


Q ss_pred             ------HHHHhhhhc------------------------hHHHHHHHH--hCcHHHHHHhcC--CChHHHHHHHHHHHHH
Q 005598          550 ------TALFNLSIY------------------------HENKARIVQ--AGAVKHLVDLMD--PAAGMVDKAVAVLANL  595 (689)
Q Consensus       550 ------~aL~nLs~~------------------------~~n~~~lv~--~G~v~~Lv~LL~--~~~~v~e~Al~~L~nL  595 (689)
                            .-...|++.                        .+|..++-+  -.++..|+++|+  .++.+..-|+.=++..
T Consensus       315 L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~  394 (442)
T KOG2759|consen  315 LTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEY  394 (442)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHH
Confidence                  112223332                        234444444  347888999993  3444555566666666


Q ss_pred             hC-CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhC
Q 005598          596 AT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN  639 (689)
Q Consensus       596 a~-~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~  639 (689)
                      .+ .|+|+..+.+.|+=..++++|.+.++.++.+|..++..|..+
T Consensus       395 Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  395 VRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             HHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            66 799999999999999999999999999999999998876543

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.93  E-value=0.00098  Score=75.18  Aligned_cols=248  Identities=18%  Similarity=0.090  Sum_probs=161.2

Q ss_pred             CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHH
Q 005598          415 STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLI  493 (689)
Q Consensus       415 s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k~~i~~~g~l~~Lv  493 (689)
                      ..+......|+-++..+++.-..-|..+....++.+|+++|..++..++..++.+|.||... ...|..+...|+++.+.
T Consensus       388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~  467 (678)
T KOG1293|consen  388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE  467 (678)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence            45667777888888888774333444455668899999999888889999999999999865 67799999999999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHhcccCchhHHH--HHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchH-HHHHHHHh--
Q 005598          494 HVLQTGSPEARENAAATLFSLSVIEDNKIK--IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE-NKARIVQA--  568 (689)
Q Consensus       494 ~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~--I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~-n~~~lv~~--  568 (689)
                      ..+.+.+..++..+.|+|.++....+....  ....=....++.+..+++..+++.+...|.||+.+.. ....+++.  
T Consensus       468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~  547 (678)
T KOG1293|consen  468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFK  547 (678)
T ss_pred             HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhh
Confidence            999999999999999999999986655433  3333445667888889999999999999999988643 33444431  


Q ss_pred             CcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHH--------hccCCHHHHHHHHHHHHHHhh
Q 005598          569 GAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEV--------VELGSARGKENAAAALLQLCT  638 (689)
Q Consensus       569 G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~l--------L~s~s~~~~e~Av~aL~~L~~  638 (689)
                      ..+....-.+  .....+.......+.++..--+....-.-.+..+.++-.        ..+.......++++.+.++..
T Consensus       548 ~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d~~~~~am~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~iinl~~  627 (678)
T KOG1293|consen  548 DVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLDTQQKKAMEGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEIINLTT  627 (678)
T ss_pred             HHHHHHHHHHhhccCCceehhhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccC
Confidence            1112211112  233444444444444444433332222222333322222        123455667788888888766


Q ss_pred             CCH--hhHHHHH-hCCChHHHHHhhhc
Q 005598          639 NSS--RFCSMVL-QEGAVPPLVALSQS  662 (689)
Q Consensus       639 ~~~--~~~~~lv-~~g~i~~L~~LL~~  662 (689)
                      ...  .....+. ..++......+..+
T Consensus       628 ~~s~s~~dr~~~~~n~i~e~~~k~~~s  654 (678)
T KOG1293|consen  628 TDSSSNFDRSNLKLNCIWELNNKLWNS  654 (678)
T ss_pred             CCCCcccchhhccccceechhhhcccc
Confidence            532  2233333 34444444444333

>TIGR02270 conserved hypothetical protein

Probab=97.92  E-value=0.00098  Score=73.84  Aligned_cols=58  Identities=14%  Similarity=0.038  Sum_probs=37.3

Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCc
Q 005598          610 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR  682 (689)
Q Consensus       610 ~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~  682 (689)
                      +++.|..+++..  .++..++.+|..+-           ....++.|+..+...  .+++.|.+.++.+..-+
T Consensus       241 a~~~L~~ll~d~--~vr~~a~~AlG~lg-----------~p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~  298 (410)
T TIGR02270       241 AQAWLRELLQAA--ATRREALRAVGLVG-----------DVEAAPWCLEAMREP--PWARLAGEAFSLITGMD  298 (410)
T ss_pred             HHHHHHHHhcCh--hhHHHHHHHHHHcC-----------CcchHHHHHHHhcCc--HHHHHHHHHHHHhhCCC
Confidence            455555555443  26666666665433           235677888876644  49999999999888743

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=7.3e-06  Score=89.60  Aligned_cols=72  Identities=24%  Similarity=0.403  Sum_probs=57.3

Q ss_pred             CCCccccccccccccCceecCCCccccHHHHHHHHhcC----CCCCCCCCCcCCCCCCCccHH----HHHHHHHHHHHcC
Q 005598           97 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG----LFVCPKTRQTLAHTTLIPNYT----VKALIANWCELNN  168 (689)
Q Consensus        97 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~----~~~cP~t~~~l~~~~l~pn~~----l~~~i~~~~~~~~  168 (689)
                      .+.+..||||++-..=|+.+.|||.||=.||.+||..+    ...||.|+..+..++|.|-+-    -+..++..+..||
T Consensus       183 ~~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng  262 (513)
T KOG2164|consen  183 GSTDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG  262 (513)
T ss_pred             cCcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence            44589999999999999999999999999999999864    346999999999888776532    2344555555555

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=0.00033  Score=77.45  Aligned_cols=234  Identities=17%  Similarity=0.149  Sum_probs=164.6

Q ss_pred             cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---cCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 005598          400 SGIETQVRKLVEDLKSTSLDTQREATAELRLLAK---HNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN  476 (689)
Q Consensus       400 ~~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~---~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~  476 (689)
                      .-......-|..+|.+++.+++..+-..|..+-.   .+|..   +.-...++.++.-+.++++.++..|+..|..+..-
T Consensus       204 ~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i  280 (675)
T KOG0212|consen  204 SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKI  280 (675)
T ss_pred             hcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcC
Confidence            3446778889999999999988554444433322   12222   11235788999999999999999999988877544


Q ss_pred             CccHHHHHHcCCHHHHHHHHcCCCH-HHHHHHHH---HHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHH
Q 005598          477 DNNKSAIANANAIEPLIHVLQTGSP-EARENAAA---TLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL  552 (689)
Q Consensus       477 ~~~k~~i~~~g~l~~Lv~lL~s~~~-~~~~~Aa~---aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL  552 (689)
                      ....-...-+|.+..++..+.+... .+++.+..   .|..+...+..+..|--...++.|.+.|.+.....+..++..+
T Consensus       281 ~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi  360 (675)
T KOG0212|consen  281 PGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWI  360 (675)
T ss_pred             CCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            4333444456777777777766544 34443332   2344444333333332235788899999999999999999999


Q ss_pred             HhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHH
Q 005598          553 FNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAA  631 (689)
Q Consensus       553 ~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~  631 (689)
                      ..|-...+++.........+.|++-| +.+..++..++.+|+++|.++.....   ...+..|+++......-....+..
T Consensus       361 ~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~l  437 (675)
T KOG0212|consen  361 ILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNL  437 (675)
T ss_pred             HHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhH
Confidence            99988778877777788999999988 67888999999999999997766521   123455555556666677788889


Q ss_pred             HHHHHhhC
Q 005598          632 ALLQLCTN  639 (689)
Q Consensus       632 aL~~L~~~  639 (689)
                      ++..||..
T Consensus       438 IIRqlC~l  445 (675)
T KOG0212|consen  438 IIRQLCLL  445 (675)
T ss_pred             HHHHHHHH
Confidence            99998875

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=2.9e-06  Score=88.35  Aligned_cols=66  Identities=23%  Similarity=0.347  Sum_probs=54.6

Q ss_pred             CCCccccccccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCCcCCC-CCCCccHHHHHHHHH
Q 005598           97 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAH-TTLIPNYTVKALIAN  162 (689)
Q Consensus        97 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~-~~l~pn~~l~~~i~~  162 (689)
                      +-.+|.||||+++++--.++ .|+|-||+.||-.-+..+++.||.||+.+.. ..|.++...-.+|.+
T Consensus        40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~  107 (381)
T KOG0311|consen   40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISK  107 (381)
T ss_pred             hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHH
Confidence            44578999999999999887 5999999999999999999999999999754 467766555555554

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=97.86  E-value=1.2e-05  Score=60.10  Aligned_cols=41  Identities=22%  Similarity=0.432  Sum_probs=34.8

Q ss_pred             ccccccccc---cCceecCCCccccHHHHHHHHhcCCCCCCCCCC
Q 005598          102 CCPLSLELM---TDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQ  143 (689)
Q Consensus       102 ~CpI~~~lm---~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~  143 (689)
                      .||||.+.+   ..|++++|||+||..||.++. .....||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            389999988   457889999999999999998 44467999985

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.85  E-value=0.00038  Score=78.25  Aligned_cols=268  Identities=16%  Similarity=0.148  Sum_probs=182.8

Q ss_pred             cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHH-h---cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005598          400 SGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIA-N---CGAINILVDMLHSSETKIQENAVTALLNLSI  475 (689)
Q Consensus       400 ~~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~-~---~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~  475 (689)
                      ..+...++.|..+|.+.+...+.-|..+|.+++.++.+.-..-. .   .-.+|.++.+.++.++.++..|+.++..+..
T Consensus       124 ~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~  203 (885)
T KOG2023|consen  124 QHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFII  203 (885)
T ss_pred             ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheee
Confidence            34567899999999999888899999999999886543222111 0   1368999999999999999999999866543


Q ss_pred             CCccHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHh
Q 005598          476 NDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN  554 (689)
Q Consensus       476 ~~~~k~~i~~-~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n  554 (689)
                      . ..+..+.. ..++..+..+-.+.++++|.+.+.++..|...-..|-.---.++++.++..-++.+..+...|+.....
T Consensus       204 ~-~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla  282 (885)
T KOG2023|consen  204 I-QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA  282 (885)
T ss_pred             c-CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence            2 23333333 256777777777888999999999998886533222221113778888888888889999999999999


Q ss_pred             hhhchHHHHHHHH--hCcHHHHHHhc-CCCh-------------------------------------------------
Q 005598          555 LSIYHENKARIVQ--AGAVKHLVDLM-DPAA-------------------------------------------------  582 (689)
Q Consensus       555 Ls~~~~n~~~lv~--~G~v~~Lv~LL-~~~~-------------------------------------------------  582 (689)
                      ++..+-.+..+..  ...+|+|+.=+ .++.                                                 
T Consensus       283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD  362 (885)
T KOG2023|consen  283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD  362 (885)
T ss_pred             HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence            9987744443332  56778877633 1000                                                 


Q ss_pred             -------HHHH---HHHHHHHHHhCCchhHHHHHhcCc----HHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHH
Q 005598          583 -------GMVD---KAVAVLANLATIPDGRVAIGQENG----IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVL  648 (689)
Q Consensus       583 -------~v~e---~Al~~L~nLa~~~e~r~~i~~~g~----v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv  648 (689)
                             .++.   .|+.+|+|+-          ....    +|.|-+.|.+....++|.++.+|..++.++-+   -++
T Consensus       363 dD~~~dWNLRkCSAAaLDVLanvf----------~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~---g~~  429 (885)
T KOG2023|consen  363 DDAFSDWNLRKCSAAALDVLANVF----------GDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ---GFV  429 (885)
T ss_pred             ccccccccHhhccHHHHHHHHHhh----------HHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh---hcc
Confidence                   0111   1223333321          2223    34455555667788999999999999876531   122


Q ss_pred             h--CCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 005598          649 Q--EGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ  681 (689)
Q Consensus       649 ~--~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~  681 (689)
                      .  .-.+|.|+.+|.+..+-+|....|.|.....+
T Consensus       430 p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~w  464 (885)
T KOG2023|consen  430 PHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKW  464 (885)
T ss_pred             cchHHHHHHHHHHhccCccceeeeeeeeHhhhhhh
Confidence            1  13578889999988898998888888776654

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=0.0024  Score=76.33  Aligned_cols=273  Identities=18%  Similarity=0.167  Sum_probs=178.6

Q ss_pred             chhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcc-cHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-Cc
Q 005598          401 GIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD-NRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DN  478 (689)
Q Consensus       401 ~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~-nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~  478 (689)
                      .+...++.|+...+|+++..|..|+..|..+...-.. .+..+.  .+.+.|.+.+...+..|+..|++++..++.. ++
T Consensus       115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~  192 (1075)
T KOG2171|consen  115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLEN  192 (1075)
T ss_pred             chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhcc
Confidence            4678999999999999999999999999988763211 111111  2334444445555555999999999888643 33


Q ss_pred             cHHHHHHc-CCHHHHHHHH----cCCCHHHHHHHHHHHHhcccCch-h-HHHHHhhCChHHHHHhhcCC--CHHHHHHHH
Q 005598          479 NKSAIANA-NAIEPLIHVL----QTGSPEARENAAATLFSLSVIED-N-KIKIGRSGAIGPLVDLLGNG--TPRGKKDAA  549 (689)
Q Consensus       479 ~k~~i~~~-g~l~~Lv~lL----~s~~~~~~~~Aa~aL~nLs~~~~-~-k~~I~~~g~I~~Lv~LL~~~--~~~v~~~Al  549 (689)
                      ++...-.- ..+|.++.+|    ..++......+..+|-.|+.... . +..+  ..+|...+.+.++.  +..++..|+
T Consensus       193 ~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l--~~ii~~~l~Ia~n~~l~~~~R~~AL  270 (1075)
T KOG2171|consen  193 NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHL--SQIIQFSLEIAKNKELENSIRHLAL  270 (1075)
T ss_pred             chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHH--HHHHHHHHHHhhcccccHHHHHHHH
Confidence            44333322 4566666555    45666666777777777654322 1 1212  13455556666654  688999999


Q ss_pred             HHHHhhhhchHHHHHH---HHhCcHHHHHHhc-C--CC--------------hHHHHHHHHHHHHHhCCchhHHHHHhcC
Q 005598          550 TALFNLSIYHENKARI---VQAGAVKHLVDLM-D--PA--------------AGMVDKAVAVLANLATIPDGRVAIGQEN  609 (689)
Q Consensus       550 ~aL~nLs~~~~n~~~l---v~~G~v~~Lv~LL-~--~~--------------~~v~e~Al~~L~nLa~~~e~r~~i~~~g  609 (689)
                      ..|..++.+.....+.   .....++.++.++ +  .+              ......|..+|..++.+-.+...+-  -
T Consensus       271 e~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p--~  348 (1075)
T KOG2171|consen  271 EFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP--P  348 (1075)
T ss_pred             HHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH--H
Confidence            9999998874332222   2345667777765 1  11              0122356777777777554443221  2


Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598          610 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       610 ~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~  680 (689)
                      .++.+-.+|.+.+..-++.|..+|..++.++.+.....+ ..+++..+..+++..++||-.|..++..+.-
T Consensus       349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~st  418 (1075)
T KOG2171|consen  349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMST  418 (1075)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhh
Confidence            356666677889999999999999999988875443322 3578888888999999999999999887764

>PF05536 Neurochondrin: Neurochondrin

Probab=97.84  E-value=0.0011  Score=76.18  Aligned_cols=234  Identities=15%  Similarity=0.097  Sum_probs=157.8

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCccc---HHHHHhcCcHHHHHHhhcC-------CCHHHHHHHHHHHHH
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDN---RMVIANCGAINILVDMLHS-------SETKIQENAVTALLN  472 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~n---r~~i~~~g~I~~Lv~lL~s-------~~~~v~~~Al~aL~n  472 (689)
                      ...+...+++|++.+.+.+..++..+.++...++..   ++.+.++=+.+.|-++|.+       +....+.-|+.+|..
T Consensus         4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~   83 (543)
T PF05536_consen    4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA   83 (543)
T ss_pred             hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence            357888999999888777788899999998876543   4457777667889999987       234567889999999


Q ss_pred             hhcCCccHHHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHH
Q 005598          473 LSINDNNKSAIANANAIEPLIHVLQTGSP-EARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATA  551 (689)
Q Consensus       473 Ls~~~~~k~~i~~~g~l~~Lv~lL~s~~~-~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~a  551 (689)
                      ++.+++....---.+.||.|+.++.+.+. ++...+..+|..++..++.+..+.+.|+++.|++.+.+ .+.....|+.+
T Consensus        84 f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l  162 (543)
T PF05536_consen   84 FCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL  162 (543)
T ss_pred             HcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence            99876554322223569999999988776 99999999999999999999999999999999999988 56678888888


Q ss_pred             HHhhhhchHHHHHHHH----hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchh--HHHH----HhcCcHHHHHHHhcc
Q 005598          552 LFNLSIYHENKARIVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG--RVAI----GQENGIPVLVEVVEL  620 (689)
Q Consensus       552 L~nLs~~~~n~~~lv~----~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~--r~~i----~~~g~v~~Lv~lL~s  620 (689)
                      |.+++........--.    ..+++.|-..+ .......-..+..|..+-...+.  ....    .-..+...|..+|++
T Consensus       163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s  242 (543)
T PF05536_consen  163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS  242 (543)
T ss_pred             HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence            8888774331110011    12334444444 22333344566677766553321  1111    112334555666665


Q ss_pred             C-CHHHHHHHHHHHHHHh
Q 005598          621 G-SARGKENAAAALLQLC  637 (689)
Q Consensus       621 ~-s~~~~e~Av~aL~~L~  637 (689)
                      . .+..+..|..+...|.
T Consensus       243 r~~~~~R~~al~Laa~Ll  260 (543)
T PF05536_consen  243 RLTPSQRDPALNLAASLL  260 (543)
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            4 4555555444444443

>PTZ00429 beta-adaptin; Provisional

Probab=97.83  E-value=0.0082  Score=71.23  Aligned_cols=248  Identities=17%  Similarity=0.147  Sum_probs=161.9

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHH-HhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS  481 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~-~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~  481 (689)
                      ++.+.+|-+.|.+.+...+..+++.+- .++.+. ..-      .+.+.++.++.+++.+++.-+...|.+++...... 
T Consensus        31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~-DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel-  102 (746)
T PTZ00429         31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGR-DVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK-  102 (746)
T ss_pred             cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-Cch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH-
Confidence            456788888888888888888888554 444432 221      24556677888899888888777777776432211 


Q ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHH
Q 005598          482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN  561 (689)
Q Consensus       482 ~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n  561 (689)
                      .+   -++..|.+=+.++++.+|..|+++|.++-.. +.-     .-.+..+.+.|.+.++-+++.|+.++..|-.... 
T Consensus       103 al---LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~-~i~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-  172 (746)
T PTZ00429        103 AL---LAVNTFLQDTTNSSPVVRALAVRTMMCIRVS-SVL-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-  172 (746)
T ss_pred             HH---HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-HHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-
Confidence            11   1356677778889999999999999987431 111     1245667788889999999999999999865333 


Q ss_pred             HHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCC
Q 005598          562 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS  640 (689)
Q Consensus       562 ~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~  640 (689)
                       ..+...|.++.|.++| +.+..++..|+.+|..+.......- -...+.+..|+..|...++..+-....+|....-.+
T Consensus       173 -elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~  250 (746)
T PTZ00429        173 -QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD  250 (746)
T ss_pred             -ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC
Confidence             2344678888999988 6788889999999999986433221 122344566666676667777776666664322111


Q ss_pred             HhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHH
Q 005598          641 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL  675 (689)
Q Consensus       641 ~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL  675 (689)
                      .   ...  ...+..+...+++.++-+.-.|..++
T Consensus       251 ~---~e~--~~il~~l~~~Lq~~N~AVVl~Aik~i  280 (746)
T PTZ00429        251 K---ESA--ETLLTRVLPRMSHQNPAVVMGAIKVV  280 (746)
T ss_pred             c---HHH--HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            1   111  13445555556666655554444433

>PF05536 Neurochondrin: Neurochondrin

Probab=97.83  E-value=0.00098  Score=76.60  Aligned_cols=231  Identities=17%  Similarity=0.150  Sum_probs=158.4

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc----cHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHhcc
Q 005598          447 AINILVDMLHSSETKIQENAVTALLNLSINDN----NKSAIANANAIEPLIHVLQTG-------SPEARENAAATLFSLS  515 (689)
Q Consensus       447 ~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~----~k~~i~~~g~l~~Lv~lL~s~-------~~~~~~~Aa~aL~nLs  515 (689)
                      .+...+.+|+..+.+-+..++..+.++....+    .+..+.++=+.+-|-++|+++       ....+.-|+.+|..++
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            35566778888775556666777777765432    244577776677788888873       3556778888899998


Q ss_pred             cCchhHHHHHhhCChHHHHHhhcCCCH-HHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHH
Q 005598          516 VIEDNKIKIGRSGAIGPLVDLLGNGTP-RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLAN  594 (689)
Q Consensus       516 ~~~~~k~~I~~~g~I~~Lv~LL~~~~~-~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L~n  594 (689)
                      ..++....---.+-||.|++.+...+. .+...|+.+|..++.+++++..+++.|+++.|.+.+.......+.|+.+|.+
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~lL~~  165 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIALNLLLN  165 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHHHHH
Confidence            876654332223679999999988776 9999999999999999999999999999999999996566778999999999


Q ss_pred             HhCCchhHHHHHh-----cCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHh-----hHHHHHhCCChHHHHHhhhcCC
Q 005598          595 LATIPDGRVAIGQ-----ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSR-----FCSMVLQEGAVPPLVALSQSGT  664 (689)
Q Consensus       595 La~~~e~r~~i~~-----~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~-----~~~~lv~~g~i~~L~~LL~~~~  664 (689)
                      ++...... ..-+     ...++.|-..+.......+-..+..|..+-...+.     ....-+-..+...|..++++.-
T Consensus       166 Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~  244 (543)
T PF05536_consen  166 LLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRL  244 (543)
T ss_pred             HHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCC
Confidence            88743321 1111     12345555555555666677778888887666531     1112222345556777777764


Q ss_pred             -HHHHHHHHHHHHHh
Q 005598          665 -PRAKEKAQALLSYF  678 (689)
Q Consensus       665 -~~vr~~A~~lL~~L  678 (689)
                       +.-|..|..+...|
T Consensus       245 ~~~~R~~al~Laa~L  259 (543)
T PF05536_consen  245 TPSQRDPALNLAASL  259 (543)
T ss_pred             CHHHHHHHHHHHHHH
Confidence             45555554444333

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.81  E-value=0.00036  Score=75.38  Aligned_cols=170  Identities=19%  Similarity=0.210  Sum_probs=134.1

Q ss_pred             HHHHHcCCHHHHHHHHcCCCHH--HHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhh
Q 005598          481 SAIANANAIEPLIHVLQTGSPE--ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSI  557 (689)
Q Consensus       481 ~~i~~~g~l~~Lv~lL~s~~~~--~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~  557 (689)
                      ..|...|+++.|++++..++.+  ++..++.+|..+. ..+|+..++..| +..++.+-+.. .++..+..+.+|.+|..
T Consensus       174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK  251 (832)
T KOG3678|consen  174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK  251 (832)
T ss_pred             hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence            4566779999999999998755  5889999888764 456777777766 56666665544 57888899999999988


Q ss_pred             c-hHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC--chhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHH
Q 005598          558 Y-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI--PDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL  633 (689)
Q Consensus       558 ~-~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~--~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL  633 (689)
                      + .+.++.++++|++..++-.+ ..++.+...|.-+|+|++.+  .+++..+++..+-..|.-+-.+.++..+.+||.++
T Consensus       252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV  331 (832)
T KOG3678|consen  252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV  331 (832)
T ss_pred             hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence            4 46789999999999988777 56788899999999998874  56678888888888888888888999999999999


Q ss_pred             HHHhhCCHhhHHHHHhCCCh
Q 005598          634 LQLCTNSSRFCSMVLQEGAV  653 (689)
Q Consensus       634 ~~L~~~~~~~~~~lv~~g~i  653 (689)
                      +.|+.+.+ .-..+-+.|.+
T Consensus       332 ~vlat~KE-~E~~VrkS~Tl  350 (832)
T KOG3678|consen  332 AVLATNKE-VEREVRKSGTL  350 (832)
T ss_pred             hhhhhhhh-hhHHHhhccch
Confidence            99988764 33444444433

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=1.8e-05  Score=90.53  Aligned_cols=54  Identities=15%  Similarity=0.257  Sum_probs=49.8

Q ss_pred             ccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCcc
Q 005598          100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN  153 (689)
Q Consensus       100 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn  153 (689)
                      -++||.|..=++|-|++.|||.||-.||+..+......||.|+..|...++.|-
T Consensus       643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I  696 (698)
T KOG0978|consen  643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRI  696 (698)
T ss_pred             ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Confidence            379999999999999999999999999999999888899999999988877653

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.80  E-value=0.0046  Score=66.95  Aligned_cols=236  Identities=17%  Similarity=0.183  Sum_probs=174.5

Q ss_pred             HHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC------Ccc----HHHHHHcCCHHHHH
Q 005598          424 ATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN------DNN----KSAIANANAIEPLI  493 (689)
Q Consensus       424 Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~------~~~----k~~i~~~g~l~~Lv  493 (689)
                      .+..+..+|. -|.-...+++.++++.|+.+|.+.+.++....+..|..|...      .+.    ...+++.+.+..|+
T Consensus       104 ~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv  182 (536)
T KOG2734|consen  104 IIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV  182 (536)
T ss_pred             HHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence            4556666666 456667788999999999999999999999999999998742      122    34456678888888


Q ss_pred             HHHcCCC------HHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHhhcCC--CHHHHHHHHHHHHhhhhch-HHHH
Q 005598          494 HVLQTGS------PEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDAATALFNLSIYH-ENKA  563 (689)
Q Consensus       494 ~lL~s~~------~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~~--~~~v~~~Al~aL~nLs~~~-~n~~  563 (689)
                      +-+..-+      .....++...+-|+.. .++....+++.|.+.-|+.-+...  -..-+..|..+|.-+..+. +++.
T Consensus       183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~  262 (536)
T KOG2734|consen  183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK  262 (536)
T ss_pred             HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence            8775432      3356677788888876 456677778889888888865543  3455666777777666644 4777


Q ss_pred             HHHHhCcHHHHHHhc------C----CChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHH
Q 005598          564 RIVQAGAVKHLVDLM------D----PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL  633 (689)
Q Consensus       564 ~lv~~G~v~~Lv~LL------~----~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL  633 (689)
                      ..-...++..|+.-+      +    ++.++.+....+|+.+...++++..++...++..+.-+++. ....+..|..+|
T Consensus       263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvL  341 (536)
T KOG2734|consen  263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVL  341 (536)
T ss_pred             hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHH
Confidence            777888899888865      1    13457788888999988899999999988887766655554 555677788999


Q ss_pred             HHHhhCCH--hhHHHHHhCCChHHHHHhhh
Q 005598          634 LQLCTNSS--RFCSMVLQEGAVPPLVALSQ  661 (689)
Q Consensus       634 ~~L~~~~~--~~~~~lv~~g~i~~L~~LL~  661 (689)
                      -....+.+  .+|..+++.+++..+.-+..
T Consensus       342 d~am~g~~gt~~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  342 DHAMFGPEGTPNCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             HHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence            88877765  79999999888777766544

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=1e-05  Score=81.48  Aligned_cols=51  Identities=22%  Similarity=0.376  Sum_probs=45.0

Q ss_pred             CccccccccccccCceecCCCccccHHHHHH-HHhcCCCCCCCCCCcCCCCC
Q 005598           99 SDFCCPLSLELMTDPVIVASGQTYERAFIKK-WIDLGLFVCPKTRQTLAHTT  149 (689)
Q Consensus        99 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~-~l~~~~~~cP~t~~~l~~~~  149 (689)
                      .+|.|+||++.|.+|+-++|||.||-.||.. |-.+....||.||+....+.
T Consensus       214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            4899999999999999999999999999999 77766667999998776543

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.70  E-value=0.003  Score=69.15  Aligned_cols=245  Identities=15%  Similarity=0.140  Sum_probs=170.0

Q ss_pred             hhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCC--CHHHHHHHH
Q 005598          431 LAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG--SPEARENAA  508 (689)
Q Consensus       431 La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~--~~~~~~~Aa  508 (689)
                      +-+..+.-+..+.-....+.+..++-+++.+++..+.+++..+..+...-..+.+.+.--.++.-|...  ...-|++|.
T Consensus        10 l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QAL   89 (371)
T PF14664_consen   10 LLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQAL   89 (371)
T ss_pred             HHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHH
Confidence            333344444444443455555555555558999999999999888888878888877666666777653  456788999


Q ss_pred             HHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHH
Q 005598          509 ATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDK  587 (689)
Q Consensus       509 ~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~  587 (689)
                      ..+..+.........+ ..|++..++.+..+.+...+..|+.+|+.|+..+  -..++..|++..|++.+ +..-.+.+.
T Consensus        90 kliR~~l~~~~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~  166 (371)
T PF14664_consen   90 KLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISES  166 (371)
T ss_pred             HHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHH
Confidence            9998876554332222 4588999999999999999999999999998843  34567899999999988 655558888


Q ss_pred             HHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccC-------CH--HHHHHHHHHHHHHhhCCHhhHHHHHh-CCChHHHH
Q 005598          588 AVAVLANLATIPDGRVAIGQENGIPVLVEVVELG-------SA--RGKENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLV  657 (689)
Q Consensus       588 Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~-------s~--~~~e~Av~aL~~L~~~~~~~~~~lv~-~g~i~~L~  657 (689)
                      .+.++-.+..++..|..+...--+..++.-+...       +.  ..-..+..++..+-+.-++....-.. ..++..|+
T Consensus       167 l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv  246 (371)
T PF14664_consen  167 LLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLV  246 (371)
T ss_pred             HHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHH
Confidence            9999999999999998887544455554444221       22  23344555555555544422211112 25788899


Q ss_pred             HhhhcCCHHHHHHHHHHHHHh
Q 005598          658 ALSQSGTPRAKEKAQALLSYF  678 (689)
Q Consensus       658 ~LL~~~~~~vr~~A~~lL~~L  678 (689)
                      ..++..++++|+....+|--+
T Consensus       247 ~~L~~p~~~ir~~Ildll~dl  267 (371)
T PF14664_consen  247 DSLRLPNPEIRKAILDLLFDL  267 (371)
T ss_pred             HHHcCCCHHHHHHHHHHHHHH
Confidence            999999999999888865544

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.69  E-value=0.0099  Score=65.15  Aligned_cols=272  Identities=15%  Similarity=0.164  Sum_probs=175.5

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCccH
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSINDNNK  480 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~--~~~v~~~Al~aL~nLs~~~~~k  480 (689)
                      ......+..++-+++.+++..+.+.+|.+.. +...-..+.+.+.--.++..|..+  +..-+++|+..+..+..-.++.
T Consensus        24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~  102 (371)
T PF14664_consen   24 SFFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP  102 (371)
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence            4455566555555568888888889988877 446666677767666666777654  3334678888887775332221


Q ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchH
Q 005598          481 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE  560 (689)
Q Consensus       481 ~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~  560 (689)
                      .. .-.+.+..++.+..+.++..+..+..+|+.|+..+.  ..+...|++..|++.+-++........+.++..+...+.
T Consensus       103 ~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~  179 (371)
T PF14664_consen  103 KE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR  179 (371)
T ss_pred             cc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence            11 244788899999999999999999999999976322  345577999999999998877788888889999988888


Q ss_pred             HHHHHHHhCcHHHHHHhc-CC-------Ch--HHHHHHHHHHHHHhCCchhHHHHHhc--CcHHHHHHHhccCCHHHHHH
Q 005598          561 NKARIVQAGAVKHLVDLM-DP-------AA--GMVDKAVAVLANLATIPDGRVAIGQE--NGIPVLVEVVELGSARGKEN  628 (689)
Q Consensus       561 n~~~lv~~G~v~~Lv~LL-~~-------~~--~v~e~Al~~L~nLa~~~e~r~~i~~~--g~v~~Lv~lL~s~s~~~~e~  628 (689)
                      .|..+...--+..++.-+ +.       +.  +....+..++..+-.+=.|--.+...  .++..|+..|.-.++.++..
T Consensus       180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~  259 (371)
T PF14664_consen  180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA  259 (371)
T ss_pred             hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence            887766544455555544 21       12  12334444444433322222222211  24555555555555555555


Q ss_pred             HHHHHHHHhhCC----------------------------------------------------HhhHHHHHhCCChHHH
Q 005598          629 AAAALLQLCTNS----------------------------------------------------SRFCSMVLQEGAVPPL  656 (689)
Q Consensus       629 Av~aL~~L~~~~----------------------------------------------------~~~~~~lv~~g~i~~L  656 (689)
                      ...++..+-.-.                                                    .-....+++.|.++.|
T Consensus       260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L  339 (371)
T PF14664_consen  260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEAL  339 (371)
T ss_pred             HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHH
Confidence            444444332100                                                    0022345578999999


Q ss_pred             HHhhhcC-CHHHHHHHHHHHHHh
Q 005598          657 VALSQSG-TPRAKEKAQALLSYF  678 (689)
Q Consensus       657 ~~LL~~~-~~~vr~~A~~lL~~L  678 (689)
                      +.++... ++.+.+||.-+|.-+
T Consensus       340 ~~li~~~~d~~l~~KAtlLL~el  362 (371)
T PF14664_consen  340 VELIESSEDSSLSRKATLLLGEL  362 (371)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHH
Confidence            9999988 688999999877654

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.012  Score=63.79  Aligned_cols=237  Identities=16%  Similarity=0.165  Sum_probs=170.0

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-----cccHH----HHHhcCcHHHHHHhhcCCC------HHHHHHHHH
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHN-----MDNRM----VIANCGAINILVDMLHSSE------TKIQENAVT  468 (689)
Q Consensus       404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-----~~nr~----~i~~~g~I~~Lv~lL~s~~------~~v~~~Al~  468 (689)
                      ..|+.|+.+|.+.|.++-...+..|..|+..+     .+...    .+++.++++.|++-+..=+      ..-..+++.
T Consensus       125 n~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~  204 (536)
T KOG2734|consen  125 NAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLA  204 (536)
T ss_pred             ccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHH
Confidence            57899999999999999999999999998643     22222    2344578888887765322      234567788


Q ss_pred             HHHHhh-cCCccHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHhcccCc-hhHHHHHhhCChHHHHHhhc-----C
Q 005598          469 ALLNLS-INDNNKSAIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLG-----N  539 (689)
Q Consensus       469 aL~nLs-~~~~~k~~i~~~g~l~~Lv~lL~s~--~~~~~~~Aa~aL~nLs~~~-~~k~~I~~~g~I~~Lv~LL~-----~  539 (689)
                      ++.|+. ..+.....+++.|.+..|+.-+...  -...+.+|..+|.-+..+. +++...+...++..|++-+.     +
T Consensus       205 vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~d  284 (536)
T KOG2734|consen  205 VVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHD  284 (536)
T ss_pred             HHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccC
Confidence            888886 4566677888888888888755543  2556788888888887754 48888888888888887764     2


Q ss_pred             C----CHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchh---HHHHHhcCcHH
Q 005598          540 G----TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDG---RVAIGQENGIP  612 (689)
Q Consensus       540 ~----~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~---r~~i~~~g~v~  612 (689)
                      +    ..+...+...+|+.+...+.|+..++...+++.+.-++....-..-.++++|..+...+++   +..+++..++.
T Consensus       285 P~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLr  364 (536)
T KOG2734|consen  285 PATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLR  364 (536)
T ss_pred             CCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHH
Confidence            1    2355667777888888899999999998888776666644444556789999999887765   45566777766


Q ss_pred             HHHHHhc---------cC-CHHHHHHHHHHHHHHhhCC
Q 005598          613 VLVEVVE---------LG-SARGKENAAAALLQLCTNS  640 (689)
Q Consensus       613 ~Lv~lL~---------s~-s~~~~e~Av~aL~~L~~~~  640 (689)
                      .+..+..         .. -...-++.+.+|+.+-.+.
T Consensus       365 tiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~  402 (536)
T KOG2734|consen  365 TIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL  402 (536)
T ss_pred             HHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence            6655543         12 2355678888888876654

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.0082  Score=62.79  Aligned_cols=247  Identities=14%  Similarity=0.177  Sum_probs=173.8

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccH----HHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNR----MVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN  479 (689)
Q Consensus       404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr----~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~  479 (689)
                      ...+.|-..|...+..++.-++..+..+...++.|-    ..++.+|..+.++..+...|.+|...|...|..++..+..
T Consensus        82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaa  161 (524)
T KOG4413|consen   82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA  161 (524)
T ss_pred             hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence            445566666667777788888888877766555442    2244679999999999989999999999999999988888


Q ss_pred             HHHHHHcCCHHHHHH--HHcCCCHHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHhhcC-CCHHHHHHHHHHHHhh
Q 005598          480 KSAIANANAIEPLIH--VLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGN-GTPRGKKDAATALFNL  555 (689)
Q Consensus       480 k~~i~~~g~l~~Lv~--lL~s~~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~-~~~~v~~~Al~aL~nL  555 (689)
                      -..+.++..++.+-.  +-...+.-+|......|..+.+ .++.....-..|.+..|..=|+. .+.-++..++.....|
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            888888877666432  2223345566667777766654 34444445456888888777776 4677888888899999


Q ss_pred             hhchHHHHHHHHhCcHHHHHHhc---CCChHHHHHHH----HHHHHHhCCchhHHHHHhc--CcHHHHHHHhccCCHHHH
Q 005598          556 SIYHENKARIVQAGAVKHLVDLM---DPAAGMVDKAV----AVLANLATIPDGRVAIGQE--NGIPVLVEVVELGSARGK  626 (689)
Q Consensus       556 s~~~~n~~~lv~~G~v~~Lv~LL---~~~~~v~e~Al----~~L~nLa~~~e~r~~i~~~--g~v~~Lv~lL~s~s~~~~  626 (689)
                      +..+..++.+.+.|+++.+..++   ++++--.-.++    ..+.+.+.-.-.-+++++.  -++...++++...++..+
T Consensus       242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai  321 (524)
T KOG4413|consen  242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI  321 (524)
T ss_pred             HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence            99999999999999999999988   23322222233    3344443322223344432  246777888888999999


Q ss_pred             HHHHHHHHHHhhCCHhhHHHHHhCC
Q 005598          627 ENAAAALLQLCTNSSRFCSMVLQEG  651 (689)
Q Consensus       627 e~Av~aL~~L~~~~~~~~~~lv~~g  651 (689)
                      +.|+.+|..+.++.. ..+.+.+.|
T Consensus       322 eaAiDalGilGSnte-GadlllkTg  345 (524)
T KOG4413|consen  322 EAAIDALGILGSNTE-GADLLLKTG  345 (524)
T ss_pred             HHHHHHHHhccCCcc-hhHHHhccC
Confidence            999999999988765 444555544

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.60  E-value=5.6e-05  Score=62.98  Aligned_cols=44  Identities=30%  Similarity=0.620  Sum_probs=34.5

Q ss_pred             CCCccccccccccccCc-------------eecCCCccccHHHHHHHHhcCCCCCCCCC
Q 005598           97 IPSDFCCPLSLELMTDP-------------VIVASGQTYERAFIKKWIDLGLFVCPKTR  142 (689)
Q Consensus        97 ~p~~f~CpI~~~lm~dP-------------V~~~~G~ty~r~~I~~~l~~~~~~cP~t~  142 (689)
                      ++++- |+||++-|.||             +..+|||.|-..||.+|+... .+||.||
T Consensus        17 ~~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR   73 (73)
T PF12678_consen   17 IADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN-NTCPLCR   73 (73)
T ss_dssp             SCCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS-SB-TTSS
T ss_pred             CcCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC-CcCCCCC
Confidence            34443 99999999554             235899999999999999876 5899996

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.60  E-value=0.0026  Score=74.82  Aligned_cols=201  Identities=19%  Similarity=0.206  Sum_probs=153.8

Q ss_pred             HhcCcHHHHHHhhcCCCHHHHHHHHHHHHH-hhcCCccHHHHHHcCCHHHHHHHHcC-C--CHHHHHHHHHHHHhcccC-
Q 005598          443 ANCGAINILVDMLHSSETKIQENAVTALLN-LSINDNNKSAIANANAIEPLIHVLQT-G--SPEARENAAATLFSLSVI-  517 (689)
Q Consensus       443 ~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~n-Ls~~~~~k~~i~~~g~l~~Lv~lL~s-~--~~~~~~~Aa~aL~nLs~~-  517 (689)
                      ..-|+.|.+++||++.-.+++---+-+=.. |+.++.++..+++.++-..++++|.. +  +++-|..|+.+|..+..+ 
T Consensus       509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf  588 (1387)
T KOG1517|consen  509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF  588 (1387)
T ss_pred             hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence            345999999999999887776544444333 47788888899999888899999987 3  357788888889888764 


Q ss_pred             chhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhh-chHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHH
Q 005598          518 EDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLAN  594 (689)
Q Consensus       518 ~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~-~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~n  594 (689)
                      .-.++...+.+.|..++..|.++ .+-.+..++.+|..|-. ++++|..-++.++...|..+| ++-.++...|+.+|..
T Consensus       589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgt  668 (1387)
T KOG1517|consen  589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGT  668 (1387)
T ss_pred             chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence            44566666778999999999986 57788888999998877 678888889999999999999 6778888899999999


Q ss_pred             HhCC-----chhHHHH------------HhcCcH---HHHHHHhccCCHHHHHHHHHHHHHHhhCCHhh
Q 005598          595 LATI-----PDGRVAI------------GQENGI---PVLVEVVELGSARGKENAAAALLQLCTNSSRF  643 (689)
Q Consensus       595 La~~-----~e~r~~i------------~~~g~v---~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~  643 (689)
                      +..+     ++....+            ++....   ..++.++..+++.++...+.+|..+..+...+
T Consensus       669 fl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~  737 (1387)
T KOG1517|consen  669 FLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSH  737 (1387)
T ss_pred             HhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHH
Confidence            8773     3332222            122222   35666777889999998888888888776543

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=4.5e-05  Score=83.09  Aligned_cols=72  Identities=25%  Similarity=0.404  Sum_probs=59.2

Q ss_pred             CCCCCCccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCC-----CCCccHHHHHHHHHHHHH
Q 005598           94 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-----TLIPNYTVKALIANWCEL  166 (689)
Q Consensus        94 ~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~-----~l~pn~~l~~~i~~~~~~  166 (689)
                      +..++.+|-|-||..++..||++||||+||+.||.+.+... ..||.|+.++...     ...+|+.+..+|..|+..
T Consensus        78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~-~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~  154 (398)
T KOG4159|consen   78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQE-TECPLCRDELVELPALEQALSLNRLLCKLITKFLEG  154 (398)
T ss_pred             CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhccC-CCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence            44579999999999999999999999999999999977743 4599999988642     233577777888888764

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.57  E-value=0.0052  Score=69.13  Aligned_cols=261  Identities=15%  Similarity=0.169  Sum_probs=171.2

Q ss_pred             HHHHHHHhhccCcccHHHHHhcCcHHHHHHhh----------cCCCHHHHHHHHHHHHHhhc-CCccHHHHHHcCCHHHH
Q 005598          424 ATAELRLLAKHNMDNRMVIANCGAINILVDML----------HSSETKIQENAVTALLNLSI-NDNNKSAIANANAIEPL  492 (689)
Q Consensus       424 Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL----------~s~~~~v~~~Al~aL~nLs~-~~~~k~~i~~~g~l~~L  492 (689)
                      |+..|+.|++ ++.+...+....++..|+.+-          ...+..+..+|+.+|+|+.. ++..|..+.+.|+.+.+
T Consensus         1 ~L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    1 CLETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             CHHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            3566777777 445666666666677666654          33568899999999999874 56778888999999999


Q ss_pred             HHHHcCC-----CHHHHHHHHHHHHhccc-CchhHHHHHhh-CChHHHHHhhcC-----------------CCHHHHHHH
Q 005598          493 IHVLQTG-----SPEARENAAATLFSLSV-IEDNKIKIGRS-GAIGPLVDLLGN-----------------GTPRGKKDA  548 (689)
Q Consensus       493 v~lL~s~-----~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~-g~I~~Lv~LL~~-----------------~~~~v~~~A  548 (689)
                      +..|+..     +.++.....++|+-++. ..+.+..+.+. +++..|+..|..                 ........+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999876     68888899999988875 55666666665 778877776641                 134556789


Q ss_pred             HHHHHhhhhchHHHHHHHHhC----cHHHHHHhc---C---CChHHHHHHHHHHHHHhCC-chh-------HHHH----H
Q 005598          549 ATALFNLSIYHENKARIVQAG----AVKHLVDLM---D---PAAGMVDKAVAVLANLATI-PDG-------RVAI----G  606 (689)
Q Consensus       549 l~aL~nLs~~~~n~~~lv~~G----~v~~Lv~LL---~---~~~~v~e~Al~~L~nLa~~-~e~-------r~~i----~  606 (689)
                      +.+++|++........--..+    ++..|..++   .   +.......++.+|.|+-.. ...       ...+    .
T Consensus       160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~  239 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD  239 (446)
T ss_pred             HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence            999999987433222111222    334444441   1   2234566777888877321 111       0011    1


Q ss_pred             hcCcHHHHHHHhcc----CC----HHHHHHHHHHHHHHhhCCHhhHHHHHh----------------CCChHHHHHhhhc
Q 005598          607 QENGIPVLVEVVEL----GS----ARGKENAAAALLQLCTNSSRFCSMVLQ----------------EGAVPPLVALSQS  662 (689)
Q Consensus       607 ~~g~v~~Lv~lL~s----~s----~~~~e~Av~aL~~L~~~~~~~~~~lv~----------------~g~i~~L~~LL~~  662 (689)
                      ....+..|+.+|..    ..    ...-.--+.+|..++..+...+..+..                ...-..|+.++.+
T Consensus       240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~  319 (446)
T PF10165_consen  240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS  319 (446)
T ss_pred             ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence            12346777777743    11    234445666777788776555544432                2356689999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCcCCC
Q 005598          663 GTPRAKEKAQALLSYFRNQRHGN  685 (689)
Q Consensus       663 ~~~~vr~~A~~lL~~L~~~~~~~  685 (689)
                      ..+.+|..++++|-.|++...++
T Consensus       320 ~~~~~k~~vaellf~Lc~~d~~~  342 (446)
T PF10165_consen  320 PDPQLKDAVAELLFVLCKEDASR  342 (446)
T ss_pred             CCchHHHHHHHHHHHHHhhhHHH
Confidence            88999999999998887655443

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.55  E-value=0.0029  Score=65.89  Aligned_cols=228  Identities=13%  Similarity=0.128  Sum_probs=161.7

Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhcCCccHHHHH-HcCCHHHHHHHHcC--CCHHHHHHHHHHHHhcccCchhHHHHHhh-C
Q 005598          453 DMLHSSETKIQENAVTALLNLSINDNNKSAIA-NANAIEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGRS-G  528 (689)
Q Consensus       453 ~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~-~~g~l~~Lv~lL~s--~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~-g  528 (689)
                      .+++.-++-.+..|+.+|.++...++.|..+- +..+-..++.++++  |..+++.+.+-++|.|+..+.....|-.. .
T Consensus       156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d  235 (432)
T COG5231         156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD  235 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34444355567888999999988877776654 44566778888876  56889999999999999988887666554 7


Q ss_pred             ChHHHHHhhcCC-CHHHHHHHHHHHHhhhhch--HHHHHHHHhCcHHHHHHhc-C---CChHHHHH---H----------
Q 005598          529 AIGPLVDLLGNG-TPRGKKDAATALFNLSIYH--ENKARIVQAGAVKHLVDLM-D---PAAGMVDK---A----------  588 (689)
Q Consensus       529 ~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~--~n~~~lv~~G~v~~Lv~LL-~---~~~~v~e~---A----------  588 (689)
                      .+.-|+++++.. ...+.+.++.++.|++...  .-...+.-.|-+...+++| +   ++.+++..   .          
T Consensus       236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~  315 (432)
T COG5231         236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK  315 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence            888899998876 4678889999999998722  3344455556555556655 1   33333211   1          


Q ss_pred             HHHH----HHH-----hCCc---------hhHHHHHhc--CcHHHHHHHhccCCHH-HHHHHHHHHHHHhhCCHhhHHHH
Q 005598          589 VAVL----ANL-----ATIP---------DGRVAIGQE--NGIPVLVEVVELGSAR-GKENAAAALLQLCTNSSRFCSMV  647 (689)
Q Consensus       589 l~~L----~nL-----a~~~---------e~r~~i~~~--g~v~~Lv~lL~s~s~~-~~e~Av~aL~~L~~~~~~~~~~l  647 (689)
                      +.+.    ..|     +-++         .+...+.+.  ..+..|.++++...+. ....|+.-+.++.+..|+....+
T Consensus       316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl  395 (432)
T COG5231         316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL  395 (432)
T ss_pred             hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence            1111    111     1111         122334433  3578899999877655 45668888999999999999999


Q ss_pred             HhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598          648 LQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       648 v~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~  680 (689)
                      .+-|+-+.++.|+.+.++++|-.|..++..+-.
T Consensus       396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            999999999999999999999999998877643

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.55  E-value=5e-05  Score=83.59  Aligned_cols=67  Identities=19%  Similarity=0.482  Sum_probs=55.8

Q ss_pred             CCCCccccccccccccCcee-cCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCc-cHHHHHHHHHH
Q 005598           96 PIPSDFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP-NYTVKALIANW  163 (689)
Q Consensus        96 ~~p~~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~p-n~~l~~~i~~~  163 (689)
                      .+.+++.||||..++.||+. +.|||.||+.||..|+.. +..||.|+.++.....+| ...+++.+..|
T Consensus        17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l   85 (391)
T KOG0297|consen   17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL   85 (391)
T ss_pred             CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence            36778999999999999999 599999999999999998 577999999988877666 34456655544

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.54  E-value=0.00014  Score=53.29  Aligned_cols=40  Identities=38%  Similarity=0.521  Sum_probs=37.5

Q ss_pred             CcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005598          435 NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS  474 (689)
Q Consensus       435 s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs  474 (689)
                      +++++..+.+.|+||.|+.+|.+.+.+++++|+++|.||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            3578899999999999999999999999999999999996

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=97.50  E-value=5.4e-05  Score=78.75  Aligned_cols=66  Identities=15%  Similarity=0.331  Sum_probs=53.8

Q ss_pred             CCCccccccccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCCcCCCC----CCCccHHHHHHHHHH
Q 005598           97 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT----TLIPNYTVKALIANW  163 (689)
Q Consensus        97 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~----~l~pn~~l~~~i~~~  163 (689)
                      +=...+|++|..+|.|+-++ .|=|||||+||-+||.. ..+||.|+..+...    .+.++++|+.++.++
T Consensus        12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL   82 (331)
T KOG2660|consen   12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL   82 (331)
T ss_pred             cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence            44678999999999999875 69999999999999998 47799999877654    366677777666543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.50  E-value=0.0096  Score=64.24  Aligned_cols=184  Identities=24%  Similarity=0.327  Sum_probs=131.6

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI  483 (689)
Q Consensus       404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i  483 (689)
                      ..+..+++.+.+.+..++..|...+..+..           ..+++.|..+|...+..++..|+.+|+.+-         
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~---------  102 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG---------  102 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence            478889999999888888888888555432           347899999999999999999999887762         


Q ss_pred             HHcCCHHHHHHHHc-CCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHH------------HHHHHH
Q 005598          484 ANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRG------------KKDAAT  550 (689)
Q Consensus       484 ~~~g~l~~Lv~lL~-s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v------------~~~Al~  550 (689)
                       ....++.|+..|. +.+..+|..++.+|..+-          ...++..|+.++.+.....            +..++.
T Consensus       103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~  171 (335)
T COG1413         103 -DPEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE  171 (335)
T ss_pred             -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence             2357889999998 588999999999999874          3456888888888765333            222222


Q ss_pred             HHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHH
Q 005598          551 ALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENA  629 (689)
Q Consensus       551 aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~A  629 (689)
                      +|..          +-....++.+..++ +....+...|..+|..+....        ......+...+...+..++..+
T Consensus       172 ~l~~----------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~  233 (335)
T COG1413         172 ALGE----------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA  233 (335)
T ss_pred             HHHH----------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence            2222          12244667777777 555677778888888877643        2345667777777777777666


Q ss_pred             HHHHHHH
Q 005598          630 AAALLQL  636 (689)
Q Consensus       630 v~aL~~L  636 (689)
                      +.+|..+
T Consensus       234 ~~~l~~~  240 (335)
T COG1413         234 LLALGEI  240 (335)
T ss_pred             HHHhccc
Confidence            6665543

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.49  E-value=0.0034  Score=70.90  Aligned_cols=267  Identities=13%  Similarity=0.082  Sum_probs=172.5

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSINDNNKS  481 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~  481 (689)
                      .-.++.+++..++.++.++..|+.++..+.-..  ....+... .+++.|..+-...+++|+.+.+.+|..|..-...|.
T Consensus       173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~--~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl  250 (885)
T KOG2023|consen  173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ--TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL  250 (885)
T ss_pred             HHhHHHHHHHHhCCChhHHHHHHhhhhheeecC--cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc
Confidence            457899999999999999999999998776532  33333332 466667677777889999999999987753211111


Q ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhh--CChHHHHHhhcCCC------------------
Q 005598          482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--GAIGPLVDLLGNGT------------------  541 (689)
Q Consensus       482 ~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~--g~I~~Lv~LL~~~~------------------  541 (689)
                      .---.+.++.++..-++.+.++...|+.....++..+-.+..+...  ..+|.|+.-+.-.+                  
T Consensus       251 ~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDr  330 (885)
T KOG2023|consen  251 VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDR  330 (885)
T ss_pred             ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCch
Confidence            1111256777777777888889999999999998877666655543  66676665443110                  


Q ss_pred             --------------------------------------HHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-----
Q 005598          542 --------------------------------------PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-----  578 (689)
Q Consensus       542 --------------------------------------~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-----  578 (689)
                                                            ...++..+.+|--|+       .+....+++.++.+|     
T Consensus       331 eeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L~  403 (885)
T KOG2023|consen  331 EEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHLS  403 (885)
T ss_pred             hhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHcC
Confidence                                                  112232233332222       123445566666655     


Q ss_pred             CCChHHHHHHHHHHHHHhCCchhHHHHHhc--CcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCChHH
Q 005598          579 DPAAGMVDKAVAVLANLATIPDGRVAIGQE--NGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPP  655 (689)
Q Consensus       579 ~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~--g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~-~~~~~lv~~g~i~~  655 (689)
                      +++..++|.++-+|+.+|..  +-+-+...  ..+|.|+.+|..+.+.++.-.||+|...+..-- +..+.... .++..
T Consensus       404 ~~~W~vrEagvLAlGAIAEG--cM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~-pvL~~  480 (885)
T KOG2023|consen  404 SEEWKVREAGVLALGAIAEG--CMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PVLEG  480 (885)
T ss_pred             cchhhhhhhhHHHHHHHHHH--HhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH-HHHHH
Confidence            45567788888888888751  11223322  257899999999999999999999977654321 11111111 23555


Q ss_pred             HHHhhhcCCHHHHHHHHHHHHHhhcC
Q 005598          656 LVALSQSGTPRAKEKAQALLSYFRNQ  681 (689)
Q Consensus       656 L~~LL~~~~~~vr~~A~~lL~~L~~~  681 (689)
                      |+.-+..++.++++.|..++..+...
T Consensus       481 ll~~llD~NK~VQEAAcsAfAtleE~  506 (885)
T KOG2023|consen  481 LLRRLLDSNKKVQEAACSAFATLEEE  506 (885)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            66666778899999999988877643

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.41  E-value=0.00098  Score=67.83  Aligned_cols=182  Identities=20%  Similarity=0.188  Sum_probs=111.6

Q ss_pred             hcCCCHHHHHHHHHHHHHhhccC--cccHHHHHhc--CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCC
Q 005598          413 LKSTSLDTQREATAELRLLAKHN--MDNRMVIANC--GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANA  488 (689)
Q Consensus       413 L~s~~~~~q~~Al~~L~~La~~s--~~nr~~i~~~--g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~  488 (689)
                      -.+.+++.+..|+..|+.+...+  ......+...  ..+..++..+.+....+...|+.+|..|+..-...-.-.-...
T Consensus        16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~   95 (228)
T PF12348_consen   16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL   95 (228)
T ss_dssp             HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            35789999999999999998876  2333333331  4556666777666778889999999998743222111113357


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchH-HHHHHHH
Q 005598          489 IEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE-NKARIVQ  567 (689)
Q Consensus       489 l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~-n~~~lv~  567 (689)
                      ++.|+..+.++...++..|..+|..+...-.....+    .++.+...+.+.++.++..++..|..+..... ....+-.
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~  171 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK  171 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence            889999999988899999999999887643311111    15666677788899999999999888766433 1111111


Q ss_pred             ----hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC
Q 005598          568 ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATI  598 (689)
Q Consensus       568 ----~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~  598 (689)
                          ..+++.+...+ |.+.++.+.|-.++..+...
T Consensus       172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence                44667777777 78889999888888888653

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.38  E-value=0.00037  Score=51.03  Aligned_cols=41  Identities=34%  Similarity=0.447  Sum_probs=38.1

Q ss_pred             CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 005598          598 IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT  638 (689)
Q Consensus       598 ~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~  638 (689)
                      +++++..+++.|+++.|+++|.+.++.+++.|+++|+||++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            35788999999999999999999999999999999999984

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.37  E-value=0.028  Score=63.37  Aligned_cols=239  Identities=19%  Similarity=0.238  Sum_probs=160.6

Q ss_pred             hhHHHHHHHHh----------cCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCC-----CHHHHHHHH
Q 005598          403 ETQVRKLVEDL----------KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-----ETKIQENAV  467 (689)
Q Consensus       403 ~~~V~~Lv~~L----------~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~-----~~~v~~~Al  467 (689)
                      ...+..|+++-          ...+..+..+|+++|.|+...++..|..+.+.|..+.++..|+..     +.++.....
T Consensus        21 ~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~  100 (446)
T PF10165_consen   21 EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDS  100 (446)
T ss_pred             HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHH
Confidence            45566666665          245788889999999999999999999999999999999999875     678888889


Q ss_pred             HHHHHhhc-CCccHHHHHHc-CCHHHHHHHHcC-----------------CCHHHHHHHHHHHHhcccCchhHHHHHhhC
Q 005598          468 TALLNLSI-NDNNKSAIANA-NAIEPLIHVLQT-----------------GSPEARENAAATLFSLSVIEDNKIKIGRSG  528 (689)
Q Consensus       468 ~aL~nLs~-~~~~k~~i~~~-g~l~~Lv~lL~s-----------------~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g  528 (689)
                      ++|.-++. ....+..+++. +++..|+..|..                 ........++.+++|+.........-....
T Consensus       101 RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~  180 (446)
T PF10165_consen  101 RLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSP  180 (446)
T ss_pred             HHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhH
Confidence            99887764 45566666554 788877776531                 134466778899999976433221101123


Q ss_pred             ChHHHHHhhc-------C--CCHHHHHHHHHHHHhhhhch-HH-------HH----HHHHhCcHHHHHHhcC------CC
Q 005598          529 AIGPLVDLLG-------N--GTPRGKKDAATALFNLSIYH-EN-------KA----RIVQAGAVKHLVDLMD------PA  581 (689)
Q Consensus       529 ~I~~Lv~LL~-------~--~~~~v~~~Al~aL~nLs~~~-~n-------~~----~lv~~G~v~~Lv~LL~------~~  581 (689)
                      .++.|+.+|.       .  ........++.+|.|+=... ..       ..    .......+..|+.+|+      ..
T Consensus       181 ~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~  260 (446)
T PF10165_consen  181 SIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEA  260 (446)
T ss_pred             HHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCc
Confidence            3444443332       1  13466777888888873211 11       00    0122346777777762      11


Q ss_pred             ---hHHHHHHHHHHHHHhCC-chhHHHHHh--------------cC--cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH
Q 005598          582 ---AGMVDKAVAVLANLATI-PDGRVAIGQ--------------EN--GIPVLVEVVELGSARGKENAAAALLQLCTNSS  641 (689)
Q Consensus       582 ---~~v~e~Al~~L~nLa~~-~e~r~~i~~--------------~g--~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~  641 (689)
                         .......+.+|..++.. ...|..+..              .|  .-..|++++.+..+.++..+...|+.||..+.
T Consensus       261 ~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~  340 (446)
T PF10165_consen  261 LKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA  340 (446)
T ss_pred             ccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence               24566778888888885 444555532              12  35689999998889999999999999998765

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.048  Score=64.52  Aligned_cols=110  Identities=21%  Similarity=0.260  Sum_probs=85.1

Q ss_pred             HHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 005598          405 QVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI  483 (689)
Q Consensus       405 ~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i  483 (689)
                      ..+.++..|+ ..++.+|.-|+..+..++. +..+-..++..|.+..|+.+|.+ -+..++.++.+|..|+.+.+....-
T Consensus      1772 ~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA 1849 (2235)
T KOG1789|consen 1772 NFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEA 1849 (2235)
T ss_pred             ccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHH
Confidence            4455666666 3567788889998888776 45677778888999999999976 5677889999999998877766666


Q ss_pred             HHcCCHHHHHHHHcC-CCHHHHHHHHHHHHhccc
Q 005598          484 ANANAIEPLIHVLQT-GSPEARENAAATLFSLSV  516 (689)
Q Consensus       484 ~~~g~l~~Lv~lL~s-~~~~~~~~Aa~aL~nLs~  516 (689)
                      ++.|++..+..++-. ..++.|..|+..+..|..
T Consensus      1850 ~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1850 LEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred             HhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence            777888888877654 458888888888887754

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.30  E-value=0.0024  Score=64.92  Aligned_cols=181  Identities=17%  Similarity=0.091  Sum_probs=114.6

Q ss_pred             cCCCHHHHHHHHHHHHhcccCc---hhHHHHHhh--CChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcH
Q 005598          497 QTGSPEARENAAATLFSLSVIE---DNKIKIGRS--GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAV  571 (689)
Q Consensus       497 ~s~~~~~~~~Aa~aL~nLs~~~---~~k~~I~~~--g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v  571 (689)
                      .+.+.+.+..|+..|..+....   .....+...  .++..+...+.+....+.+.|+.++..|+..-.....-.-...+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            4567888888888888886533   233333332  56677777777777889999999999998854444333456688


Q ss_pred             HHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHH--
Q 005598          572 KHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVL--  648 (689)
Q Consensus       572 ~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv--  648 (689)
                      +.|++.+ +....+.+.|..+|..++..-..-..+    .++.+...+.+.++.++..++..|..+....+.....+-  
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~  172 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS  172 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence            8999988 666778889999999988854411111    146667777889999999999999988776551111111  


Q ss_pred             --hCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 005598          649 --QEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ  681 (689)
Q Consensus       649 --~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~  681 (689)
                        -...++.|...+.+.++.+|+.|..++..+..+
T Consensus       173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence              134677888899999999999999998888654

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>TIGR02270 conserved hypothetical protein

Probab=97.25  E-value=0.022  Score=63.31  Aligned_cols=151  Identities=18%  Similarity=0.072  Sum_probs=97.9

Q ss_pred             hHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 005598          404 TQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA  482 (689)
Q Consensus       404 ~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~  482 (689)
                      ..++.|+..|. ..+.++...++..+.  ....         ..++..|+..|...++.++..++.+|..+         
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~---------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i---------  113 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALL--AQED---------ALDLRSVLAVLQAGPEGLCAGIQAALGWL---------  113 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHh--ccCC---------hHHHHHHHHHhcCCCHHHHHHHHHHHhcC---------
Confidence            45666777774 445555444333332  1211         11377888888877777888888887654         


Q ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHH
Q 005598          483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK  562 (689)
Q Consensus       483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~  562 (689)
                       ......+.|+.+|++.++.++..++.++...           .....+.|..+|++.++.++..|+.+|..|-      
T Consensus       114 -~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~------  175 (410)
T TIGR02270       114 -GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELP------  175 (410)
T ss_pred             -CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhc------
Confidence             2335667788888888888887777666542           2235677888888888888888888887763      


Q ss_pred             HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHh
Q 005598          563 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLA  596 (689)
Q Consensus       563 ~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa  596 (689)
                          ...+++.|...+ +.+..+...|+..|..+.
T Consensus       176 ----~~~a~~~L~~al~d~~~~VR~aA~~al~~lG  206 (410)
T TIGR02270       176 ----RRLSESTLRLYLRDSDPEVRFAALEAGLLAG  206 (410)
T ss_pred             ----cccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence                234555566666 566777777787776653

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=0.0013  Score=72.45  Aligned_cols=182  Identities=12%  Similarity=0.109  Sum_probs=140.8

Q ss_pred             cHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598          479 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI  557 (689)
Q Consensus       479 ~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~  557 (689)
                      -|.-+.+....++|+++|..++.-+.--+...++|+.. ...-+..+...|+|..|+.++.+.+...+.+..|.|.+|..
T Consensus       423 LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmy  502 (743)
T COG5369         423 LRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMY  502 (743)
T ss_pred             HHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhh
Confidence            36667778899999999999877777778888898865 56668888899999999999998888999999999999988


Q ss_pred             chH--HHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCc----hhHHHHHhcC----cHHHHHHHhccCCHHHH
Q 005598          558 YHE--NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP----DGRVAIGQEN----GIPVLVEVVELGSARGK  626 (689)
Q Consensus       558 ~~~--n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~----e~r~~i~~~g----~v~~Lv~lL~s~s~~~~  626 (689)
                      +..  .+-++++.-++..++++. ++.-.+.+.++.+|.|+..+.    +.+..+....    ....|++.+...+|...
T Consensus       503 ncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i  582 (743)
T COG5369         503 NCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEI  582 (743)
T ss_pred             cCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhh
Confidence            543  456778888899999998 788899999999999987622    1222222211    34667777788888888


Q ss_pred             HHHHHHHHHHhhCCHhhHHHHHh-CCChHHHHHhh
Q 005598          627 ENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLVALS  660 (689)
Q Consensus       627 e~Av~aL~~L~~~~~~~~~~lv~-~g~i~~L~~LL  660 (689)
                      +..+.+|.+++.-++.....+.+ ...+..+..+|
T Consensus       583 ~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil  617 (743)
T COG5369         583 LEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL  617 (743)
T ss_pred             hhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence            88899999988887766666654 44555555544

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.21  E-value=0.018  Score=62.16  Aligned_cols=160  Identities=31%  Similarity=0.379  Sum_probs=114.9

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHH
Q 005598          446 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG  525 (689)
Q Consensus       446 g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~  525 (689)
                      ..++.++.++.+.+..++..|...|..+          ....+++.+..+|.+.+..+|..|+.+|..+-          
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----------  102 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDPRVRDAAADALGELG----------  102 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------
Confidence            4788889999988888998888886554          23457899999999999999999999887762          


Q ss_pred             hhCChHHHHHhhc-CCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhcCCChHHHHHHHHHH-HHHhCCchhH-
Q 005598          526 RSGAIGPLVDLLG-NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVL-ANLATIPDGR-  602 (689)
Q Consensus       526 ~~g~I~~Lv~LL~-~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L-~nLa~~~e~r-  602 (689)
                      ....++.|+.+|. +.+..++..+..+|..+-.          ..++..|+.++.......  +...+ ..+.   ..| 
T Consensus       103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~--a~~~~~~~~~---~~r~  167 (335)
T COG1413         103 DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGS--AAAALDAALL---DVRA  167 (335)
T ss_pred             ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhh--hhhhccchHH---HHHH
Confidence            3467899999999 5889999999999988733          334677777773322111  11111 0000   111 


Q ss_pred             ---HHH---HhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCC
Q 005598          603 ---VAI---GQENGIPVLVEVVELGSARGKENAAAALLQLCTNS  640 (689)
Q Consensus       603 ---~~i---~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~  640 (689)
                         ..+   .....++.+...+......++..|+.+|..+....
T Consensus       168 ~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~  211 (335)
T COG1413         168 AAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN  211 (335)
T ss_pred             HHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence               111   12346788999999888999999999999888765

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=0.0026  Score=70.23  Aligned_cols=183  Identities=15%  Similarity=0.130  Sum_probs=132.8

Q ss_pred             HHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHHHHcCCCH
Q 005598          423 EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSP  501 (689)
Q Consensus       423 ~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k~~i~~~g~l~~Lv~lL~s~~~  501 (689)
                      .++..|..+++.-..-|..+.++.+++.|+.+|..++..+.-.+...++|+... ..-+..+.+.+.+..|+.++.+.+.
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd  487 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD  487 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence            455566777765445577778889999999999887777777778888888644 5568888999999999999999899


Q ss_pred             HHHHHHHHHHHhcccCchh--HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchH----HHHHHHHhC----cH
Q 005598          502 EARENAAATLFSLSVIEDN--KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE----NKARIVQAG----AV  571 (689)
Q Consensus       502 ~~~~~Aa~aL~nLs~~~~~--k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~----n~~~lv~~G----~v  571 (689)
                      .++.+..|++..+-.+.+.  +-.+...-++..++.+..++.-.++..++..|.|++.+..    .+.-+++..    ..
T Consensus       488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf  567 (743)
T COG5369         488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF  567 (743)
T ss_pred             hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence            9999999999999875443  4455566778999999999999999999999999987322    222222222    23


Q ss_pred             HHHHHhcCC-ChHHHHHHHHHHHHHhCCchhHHHH
Q 005598          572 KHLVDLMDP-AAGMVDKAVAVLANLATIPDGRVAI  605 (689)
Q Consensus       572 ~~Lv~LL~~-~~~v~e~Al~~L~nLa~~~e~r~~i  605 (689)
                      ..|++.+.. ++-..+..+.+|.+++.+.+....+
T Consensus       568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~  602 (743)
T COG5369         568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLDYI  602 (743)
T ss_pred             HHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHH
Confidence            334444432 3333456688888887766654433

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.00022  Score=73.21  Aligned_cols=47  Identities=17%  Similarity=0.116  Sum_probs=43.9

Q ss_pred             ccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCC
Q 005598          102 CCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT  148 (689)
Q Consensus       102 ~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~  148 (689)
                      .|+||+.-|.-||.++|+|.||.-||+--...+..+||+||.++++.
T Consensus         9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            59999999999999999999999999998887778899999999875

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.11  E-value=0.0027  Score=54.07  Aligned_cols=86  Identities=30%  Similarity=0.406  Sum_probs=69.8

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHh
Q 005598          448 INILVDML-HSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR  526 (689)
Q Consensus       448 I~~Lv~lL-~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~  526 (689)
                      |+.|+..| ++.++.++..++.+|+.+.          ....++.|+.+++++++.++..|+.+|..+-          .
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence            67899988 7889999999999998542          2245899999999999999999999999872          4


Q ss_pred             hCChHHHHHhhcCCC-HHHHHHHHHHHH
Q 005598          527 SGAIGPLVDLLGNGT-PRGKKDAATALF  553 (689)
Q Consensus       527 ~g~I~~Lv~LL~~~~-~~v~~~Al~aL~  553 (689)
                      ..+++.|.+++.+.+ ..++..|+.+|.
T Consensus        61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            568999999998764 556788887763

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.08  E-value=0.048  Score=61.76  Aligned_cols=268  Identities=15%  Similarity=0.146  Sum_probs=165.2

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHH-HHHHHHHhhcCCccHH
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN-AVTALLNLSINDNNKS  481 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~-Al~aL~nLs~~~~~k~  481 (689)
                      ....+.+.+.+.+.....+..+...+..+..+.  .-..+.+.+++..|...+.......... +.-+...++.+-.   
T Consensus       133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---  207 (569)
T KOG1242|consen  133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---  207 (569)
T ss_pred             HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---
Confidence            456778888888888888888999998887743  3445556688888888887654433332 2222222211100   


Q ss_pred             HHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598          482 AIANANAIEPLIHVLQ---TGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI  557 (689)
Q Consensus       482 ~i~~~g~l~~Lv~lL~---s~~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~  557 (689)
                      ...+...++.+-.+|.   +....+|..|..+...+-. .+....    .-.++.++.-+.....+.+..++..|..|+.
T Consensus       208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~  283 (569)
T KOG1242|consen  208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMAD  283 (569)
T ss_pred             CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            1123344444444443   4556777777766655522 111111    1234444444444467889999999999988


Q ss_pred             chHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHH-----------------------------HH--
Q 005598          558 YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV-----------------------------AI--  605 (689)
Q Consensus       558 ~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~-----------------------------~i--  605 (689)
                      ....+-...-..++|.|.+.| +...++...+..+|..++..-++..                             .+  
T Consensus       284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~  363 (569)
T KOG1242|consen  284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVA  363 (569)
T ss_pred             hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeee
Confidence            888788888899999999999 7788888888887777654222111                             00  


Q ss_pred             -HhcCcHHHHHHHhcc----CCHHHHHHHHHHHHHHhhCCH--hhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHH-HH
Q 005598          606 -GQENGIPVLVEVVEL----GSARGKENAAAALLQLCTNSS--RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL-SY  677 (689)
Q Consensus       606 -~~~g~v~~Lv~lL~s----~s~~~~e~Av~aL~~L~~~~~--~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL-~~  677 (689)
                       ++.-.+..++.+|.+    .+...+..++.+++|+|.--+  ....-++ .-.+|.|-..+....|++|..|..+| .+
T Consensus       364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PEvR~vaarAL~~l  442 (569)
T KOG1242|consen  364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPEVRAVAARALGAL  442 (569)
T ss_pred             eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence             112234555555543    355677889999999998653  2111111 23566666666666799999998888 44


Q ss_pred             hhc
Q 005598          678 FRN  680 (689)
Q Consensus       678 L~~  680 (689)
                      +++
T Consensus       443 ~e~  445 (569)
T KOG1242|consen  443 LER  445 (569)
T ss_pred             HHH
Confidence            443

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.08  E-value=0.048  Score=60.98  Aligned_cols=265  Identities=18%  Similarity=0.124  Sum_probs=135.6

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc----
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN----  479 (689)
Q Consensus       404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~----  479 (689)
                      ...+.|-..|++.-..++.++++.+..|+..+-  -..+. ...|..|-.+|.+.....+..|+++|..|+.....    
T Consensus       264 q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v  340 (898)
T COG5240         264 QLRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV  340 (898)
T ss_pred             HHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee
Confidence            456677777877667889999999999877541  11122 14677888889998999999999999999853211    


Q ss_pred             -----HHHHHHcC---CHHHHHHHHcCCCHHHHHHHHHHHHhccc--CchhHHHHHhhCChHHHHHhhcCCCHHHHHHHH
Q 005598          480 -----KSAIANAN---AIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAA  549 (689)
Q Consensus       480 -----k~~i~~~g---~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~--~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al  549 (689)
                           -..|-+.+   ..-++..+|+.|+.+....-+..|-+...  .+..+..++  .++..|.-++    ++-+..-+
T Consensus       341 cN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~i--da~rsLsl~F----p~k~~s~l  414 (898)
T COG5240         341 CNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAI--DALRSLSLLF----PSKKLSYL  414 (898)
T ss_pred             cChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeH--HHHHHHHhhC----cHHHHHHH
Confidence                 12222221   23345566666665543333333333221  111111110  0111111000    01111111


Q ss_pred             HHHHhhhhchHHHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhHHHHH-------hcC--------cHHHH
Q 005598          550 TALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIG-------QEN--------GIPVL  614 (689)
Q Consensus       550 ~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~-------~~g--------~v~~L  614 (689)
                      ..|.+...+...-  -.+.-.|.++.++++..++..+.|+..|+......+..+..+       ++|        .|..+
T Consensus       415 ~FL~~~L~~eGg~--eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhI  492 (898)
T COG5240         415 DFLGSSLLQEGGL--EFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHI  492 (898)
T ss_pred             HHHHHHHHhcccc--hHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHH
Confidence            1111111110000  001112334444444444555666555555433222211110       111        13333


Q ss_pred             HHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCc
Q 005598          615 VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR  682 (689)
Q Consensus       615 v~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~  682 (689)
                      ..-+--.+.-++..|+.+|...+.+-.   ..+....+...|..++...++.+|..|..+|+.++..+
T Consensus       493 yNR~iLEN~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~d  557 (898)
T COG5240         493 YNRLILENNIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSD  557 (898)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhh
Confidence            333333556677788888877666533   12223345567778888889999999999999998644

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=0.017  Score=64.32  Aligned_cols=236  Identities=14%  Similarity=0.081  Sum_probs=164.6

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHH
Q 005598          446 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI  524 (689)
Q Consensus       446 g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~-~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I  524 (689)
                      ++||.|-.-+...++..+...+..|..|-.-+ ..+.+.- ...++.|..+|.+.+.+++..+-.+|.++-..-.++...
T Consensus       167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s  245 (675)
T KOG0212|consen  167 EFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS  245 (675)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence            56777766666678888888888887663222 2333332 367888899999999999877666665543211122222


Q ss_pred             Hhh-CChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhcCCChH--HHHHHH---HHHHHHhCC
Q 005598          525 GRS-GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAG--MVDKAV---AVLANLATI  598 (689)
Q Consensus       525 ~~~-g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~~~~~--v~e~Al---~~L~nLa~~  598 (689)
                      .+. ..++.++.-+.+..+.++..|+..|.......+......-.|++..++..+.++..  +.+.+.   +.|..++..
T Consensus       246 ~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~  325 (675)
T KOG0212|consen  246 MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSS  325 (675)
T ss_pred             cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhh
Confidence            232 67888999999999999999999998887766666666668888888888843332  333222   345556665


Q ss_pred             chhHHHHHhcC-cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 005598          599 PDGRVAIGQEN-GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY  677 (689)
Q Consensus       599 ~e~r~~i~~~g-~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~  677 (689)
                      +...+. ++.| .+..|.+.+......++-.+..-+..|-...+. +-.+.....++.|+.-+.+.++.+...+.++|..
T Consensus       326 ~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~  403 (675)
T KOG0212|consen  326 ERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS  403 (675)
T ss_pred             hhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence            555555 4444 578889999888899998888888887776652 2223346788999998988889999999999988


Q ss_pred             hhcCcCC
Q 005598          678 FRNQRHG  684 (689)
Q Consensus       678 L~~~~~~  684 (689)
                      +....+.
T Consensus       404 i~~s~~~  410 (675)
T KOG0212|consen  404 ICSSSNS  410 (675)
T ss_pred             HhcCccc
Confidence            8876655

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=96.99  E-value=0.0052  Score=52.32  Aligned_cols=85  Identities=29%  Similarity=0.425  Sum_probs=67.6

Q ss_pred             HHHHHHHH-cCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHH
Q 005598          489 IEPLIHVL-QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ  567 (689)
Q Consensus       489 l~~Lv~lL-~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~  567 (689)
                      |+.|++.| +++++.+|..|+.+|..+-          ...+++.|+.++++.++.++..|+.+|..+.          .
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence            57889988 7888999999999999652          3366999999999999999999999999872          3


Q ss_pred             hCcHHHHHHhc-CC-ChHHHHHHHHHHH
Q 005598          568 AGAVKHLVDLM-DP-AAGMVDKAVAVLA  593 (689)
Q Consensus       568 ~G~v~~Lv~LL-~~-~~~v~e~Al~~L~  593 (689)
                      ..+++.|.+++ ++ +..+...|+.+|+
T Consensus        61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            45888999988 43 3445677777764

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.92  E-value=0.00066  Score=74.07  Aligned_cols=51  Identities=18%  Similarity=0.319  Sum_probs=44.6

Q ss_pred             CccccccccccccCceecCCCccccHHHHHHHHhc----CCCCCCCCCCcCCCCC
Q 005598           99 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL----GLFVCPKTRQTLAHTT  149 (689)
Q Consensus        99 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~----~~~~cP~t~~~l~~~~  149 (689)
                      .+..|-+|.+.-+||+...|.|+|||-||.+|...    .+-+||.|..+|+.+.
T Consensus       535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl  589 (791)
T KOG1002|consen  535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL  589 (791)
T ss_pred             CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence            35789999999999999999999999999998754    3467999999998763

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.00055  Score=70.20  Aligned_cols=58  Identities=16%  Similarity=0.181  Sum_probs=47.1

Q ss_pred             cccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHH
Q 005598          101 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALI  160 (689)
Q Consensus       101 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i  160 (689)
                      |.|-||.+.|.+||++.|||+||..|-.+.++.+ ..|++|++.... .+-+...|....
T Consensus       242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~-~~c~vC~~~t~g-~~~~akeL~~~L  299 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKG-EKCYVCSQQTHG-SFNVAKELLVSL  299 (313)
T ss_pred             ccccccccccccchhhcCCceeehhhhccccccC-Ccceeccccccc-ccchHHHHHHHH
Confidence            7899999999999999999999999999999876 569999987654 344444444433

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.00052  Score=79.14  Aligned_cols=47  Identities=26%  Similarity=0.584  Sum_probs=41.7

Q ss_pred             CCccccccccccccC-----ceecCCCccccHHHHHHHHhcCCCCCCCCCCcC
Q 005598           98 PSDFCCPLSLELMTD-----PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL  145 (689)
Q Consensus        98 p~~f~CpI~~~lm~d-----PV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l  145 (689)
                      ..+-.|+||.+.|..     |-.++|||.|...|+.+|+++. .+||.||..+
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~-qtCP~CR~~~  340 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ-QTCPTCRTVL  340 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh-CcCCcchhhh
Confidence            346789999999999     7789999999999999999984 7899999843

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.082  Score=55.56  Aligned_cols=236  Identities=14%  Similarity=0.162  Sum_probs=162.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-c----HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHH
Q 005598          448 INILVDMLHSSETKIQENAVTALLNLSINDN-N----KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKI  522 (689)
Q Consensus       448 I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~-~----k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~  522 (689)
                      .+.|-.=|..++..|+.-++..++-+..+.+ |    ...++.++.++.++..+...+.++...|...|..++..+..-.
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaale  163 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALE  163 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHH
Confidence            3344444445666777777777666654322 1    3345578999999999999999999999999999999888888


Q ss_pred             HHHhhCChHHH--HHhhcCCCHHHHHHHHHHHHhhhh-chHHHHHHHHhCcHHHHHHhcCC--ChHHHHHHHHHHHHHhC
Q 005598          523 KIGRSGAIGPL--VDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMDP--AAGMVDKAVAVLANLAT  597 (689)
Q Consensus       523 ~I~~~g~I~~L--v~LL~~~~~~v~~~Al~aL~nLs~-~~~n~~~lv~~G~v~~Lv~LL~~--~~~v~e~Al~~L~nLa~  597 (689)
                      .|.+...+..+  +.+--..+.-++...+..+..+.+ .++.....-..|.+..|..-|..  +.-+.-.++.....|+.
T Consensus       164 aiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae  243 (524)
T KOG4413|consen  164 AIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE  243 (524)
T ss_pred             HhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence            88777666554  333233455566677777777766 55555666678888888877733  33345678888899999


Q ss_pred             CchhHHHHHhcCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhhC------CH-hhHHHHHhCCChHHHHHhhhcCCHHHH
Q 005598          598 IPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQLCTN------SS-RFCSMVLQEGAVPPLVALSQSGTPRAK  668 (689)
Q Consensus       598 ~~e~r~~i~~~g~v~~Lv~lL~s--~s~~~~e~Av~aL~~L~~~------~~-~~~~~lv~~g~i~~L~~LL~~~~~~vr  668 (689)
                      ..-+++.+.+.|.+..+..++..  .+|-.+..+...-..+...      .+ ..+..+.  -++..-++.+...++.+.
T Consensus       244 teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali--iaidgsfEmiEmnDpdai  321 (524)
T KOG4413|consen  244 TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI--IAIDGSFEMIEMNDPDAI  321 (524)
T ss_pred             HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH--HHHHhhHHhhhcCCchHH
Confidence            99999999999999999999864  3455555555444433322      11 1122221  235556677788889999


Q ss_pred             HHHHHHHHHhhcCcCCC
Q 005598          669 EKAQALLSYFRNQRHGN  685 (689)
Q Consensus       669 ~~A~~lL~~L~~~~~~~  685 (689)
                      +.|...|..|-...+|.
T Consensus       322 eaAiDalGilGSnteGa  338 (524)
T KOG4413|consen  322 EAAIDALGILGSNTEGA  338 (524)
T ss_pred             HHHHHHHHhccCCcchh
Confidence            99999999888777664

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.71  E-value=0.13  Score=59.12  Aligned_cols=219  Identities=14%  Similarity=0.184  Sum_probs=136.4

Q ss_pred             chhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcC-Cc
Q 005598          401 GIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSIN-DN  478 (689)
Q Consensus       401 ~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s-~~~~v~~~Al~aL~nLs~~-~~  478 (689)
                      +....++.|++.|.++++.+|..|+..|+.||+.+|.|.-.+     -|.+..+|.. .+.=+....+.+.++|+-- +.
T Consensus       178 Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPR  252 (877)
T KOG1059|consen  178 ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR  252 (877)
T ss_pred             hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCch
Confidence            345678999999999999999999999999999988775443     4677777744 3333445566777777532 22


Q ss_pred             cHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHhc--ccC-chhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHh
Q 005598          479 NKSAIANANAIEPLIHVLQTGS-PEARENAAATLFSL--SVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN  554 (689)
Q Consensus       479 ~k~~i~~~g~l~~Lv~lL~s~~-~~~~~~Aa~aL~nL--s~~-~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n  554 (689)
                      -     ....+++|..++.+.. ..+...++.++...  +.. ++.-..+  .-++..|-.++.+.++..+..++.|+..
T Consensus       253 L-----gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~K  325 (877)
T KOG1059|consen  253 L-----GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSK  325 (877)
T ss_pred             h-----hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHH
Confidence            2     2246788888887764 44555555554433  221 1111111  1246666677778899999999999999


Q ss_pred             hhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCC-HHHHHHHHHH
Q 005598          555 LSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS-ARGKENAAAA  632 (689)
Q Consensus       555 Ls~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s-~~~~e~Av~a  632 (689)
                      +...+.-....    --..+++.| +.+..+.-+|+.+|.-+... ++-.+     ++..|+..+...+ ..-+..-+.-
T Consensus       326 I~ktHp~~Vqa----~kdlIlrcL~DkD~SIRlrALdLl~gmVsk-kNl~e-----IVk~LM~~~~~ae~t~yrdell~~  395 (877)
T KOG1059|consen  326 ILKTHPKAVQA----HKDLILRCLDDKDESIRLRALDLLYGMVSK-KNLME-----IVKTLMKHVEKAEGTNYRDELLTR  395 (877)
T ss_pred             HhhhCHHHHHH----hHHHHHHHhccCCchhHHHHHHHHHHHhhh-hhHHH-----HHHHHHHHHHhccchhHHHHHHHH
Confidence            88755432211    123556667 66788889999999887652 22222     2344444443332 2444455555


Q ss_pred             HHHHhhCCH
Q 005598          633 LLQLCTNSS  641 (689)
Q Consensus       633 L~~L~~~~~  641 (689)
                      +..+|+.+.
T Consensus       396 II~iCS~sn  404 (877)
T KOG1059|consen  396 IISICSQSN  404 (877)
T ss_pred             HHHHhhhhh
Confidence            566666543

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.71  E-value=0.13  Score=59.38  Aligned_cols=274  Identities=13%  Similarity=0.085  Sum_probs=171.4

Q ss_pred             hhHHHHHHHHhcCCCHH-HHHHHHHHHHHhhccCcccHHHHHhc-CcHHHHHHhhcC--CCHHHHHHHHHHHHHhhcC-C
Q 005598          403 ETQVRKLVEDLKSTSLD-TQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHS--SETKIQENAVTALLNLSIN-D  477 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~-~q~~Al~~L~~La~~s~~nr~~i~~~-g~I~~Lv~lL~s--~~~~v~~~Al~aL~nLs~~-~  477 (689)
                      .+.+..|+.....+.+. ++..++..|.-++.+- .-....... .++-.++.=.++  .+..++..|+.+|.|--.- .
T Consensus       128 p~li~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~  206 (859)
T KOG1241|consen  128 PELIVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK  206 (859)
T ss_pred             HHHHHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH
Confidence            57788888888765544 6778888999888742 222333222 445555554433  4677899999999875311 1


Q ss_pred             ccHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhh
Q 005598          478 NNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL  555 (689)
Q Consensus       478 ~~k~~i~~-~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL  555 (689)
                      .|-..=.+ .-.+...+..-++++.+++..|..+|..|.. +.+.-..-.....+..-+.-+++.+.++...+...=.++
T Consensus       207 ~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsti  286 (859)
T KOG1241|consen  207 ANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTI  286 (859)
T ss_pred             HhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            11111111 1234445566677889999999999888754 333333323334455556667788888888888877777


Q ss_pred             hhchHH----HHHHHH---------------hCcHHHHHHhc-C--C-----ChHHHHHHHHHHHHHhCCchhHHHHHhc
Q 005598          556 SIYHEN----KARIVQ---------------AGAVKHLVDLM-D--P-----AAGMVDKAVAVLANLATIPDGRVAIGQE  608 (689)
Q Consensus       556 s~~~~n----~~~lv~---------------~G~v~~Lv~LL-~--~-----~~~v~e~Al~~L~nLa~~~e~r~~i~~~  608 (689)
                      |...-.    -..+++               .+++|.|+++| +  +     +......|-.+|..++.+-.  ..|+. 
T Consensus       287 ceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~--D~Iv~-  363 (859)
T KOG1241|consen  287 CEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG--DDIVP-  363 (859)
T ss_pred             HHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc--ccchh-
Confidence            653211    011111               36788999988 2  1     12344555555655554211  11111 


Q ss_pred             CcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598          609 NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       609 g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~  680 (689)
                      .+++.+-+-+++.+.+-++.|+.++..+..+....+..-+-.++++.++.++...+--+++-++|.|..+..
T Consensus       364 ~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d  435 (859)
T KOG1241|consen  364 HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIAD  435 (859)
T ss_pred             hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHh
Confidence            334444445678899999999999999887766556555567899999999997777888889988776654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.67  E-value=0.068  Score=63.51  Aligned_cols=198  Identities=15%  Similarity=0.153  Sum_probs=140.5

Q ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHh-cccCchhHHHHHhhCChHHHHHhhcC-C--CHHHHHHHHHHHHhhh
Q 005598          481 SAIANANAIEPLIHVLQTGSPEARENAAATLFS-LSVIEDNKIKIGRSGAIGPLVDLLGN-G--TPRGKKDAATALFNLS  556 (689)
Q Consensus       481 ~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~n-Ls~~~~~k~~I~~~g~I~~Lv~LL~~-~--~~~v~~~Al~aL~nLs  556 (689)
                      ..-...|.+|.++++|++...+++..-+.+=.. |+.++.++..+++.++-...+..|.. .  +++-+..|+..|.-++
T Consensus       506 ~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv  585 (1387)
T KOG1517|consen  506 DLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIV  585 (1387)
T ss_pred             hhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHH
Confidence            344456999999999999988887765544433 46677788888888777777777776 3  4577777888888887


Q ss_pred             h-chHHHHHHHHhCcHHHHHHhcCC--ChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHH
Q 005598          557 I-YHENKARIVQAGAVKHLVDLMDP--AAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAA  632 (689)
Q Consensus       557 ~-~~~n~~~lv~~G~v~~Lv~LL~~--~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~a  632 (689)
                      . .+-.+....+.+.+..+++.|.+  ..-+..-++-+|+.|=. ..+.|=.=++.++...|..+|....++++..|+.+
T Consensus       586 ~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFA  665 (1387)
T KOG1517|consen  586 RNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFA  665 (1387)
T ss_pred             cccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHH
Confidence            7 45667778889999999999943  23344556666666655 34445444678889999999999999999999999


Q ss_pred             HHHHhhCC----HhhHHHH------------HhCCCh---HHHHHhhhcCCHHHHHHHHHHHHHh
Q 005598          633 LLQLCTNS----SRFCSMV------------LQEGAV---PPLVALSQSGTPRAKEKAQALLSYF  678 (689)
Q Consensus       633 L~~L~~~~----~~~~~~l------------v~~g~i---~~L~~LL~~~~~~vr~~A~~lL~~L  678 (689)
                      |..+..+.    ++....+            ++..+.   ..|+.+++.+++-++....-.|..+
T Consensus       666 Lgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~  730 (1387)
T KOG1517|consen  666 LGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHF  730 (1387)
T ss_pred             HHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            99988753    2111111            121122   3677788888887776655555444

>PF04641 Rtf2: Rtf2 RING-finger

Probab=96.65  E-value=0.0013  Score=68.53  Aligned_cols=54  Identities=17%  Similarity=0.381  Sum_probs=43.3

Q ss_pred             CCCccccccccccccC--cee--cCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCc
Q 005598           97 IPSDFCCPLSLELMTD--PVI--VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP  152 (689)
Q Consensus        97 ~p~~f~CpI~~~lm~d--PV~--~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~p  152 (689)
                      -...|.||||+..|..  +.+  .+|||+|...+|.+--  ....||+|+.+++..+++|
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~  167 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP  167 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence            3567999999999954  333  4999999999999983  2356999999999887664

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=96.63  E-value=0.085  Score=59.81  Aligned_cols=242  Identities=15%  Similarity=0.161  Sum_probs=149.2

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI  483 (689)
Q Consensus       404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i  483 (689)
                      ..++.++....+....++..|......+...-+....    .-.+|.++.-+.....+....++..|..++.....+...
T Consensus       216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~  291 (569)
T KOG1242|consen  216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL  291 (569)
T ss_pred             hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH
Confidence            4567777777777777887777766665442111100    012333333333335566778888998887666666667


Q ss_pred             HHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHH
Q 005598          484 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKA  563 (689)
Q Consensus       484 ~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~  563 (689)
                      .....+|.+.+.|-+..++++..+..+|..++..-+|...   .-.++.|++.+.+....+.. ++..|..-+.     .
T Consensus       292 ~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttF-----V  362 (569)
T KOG1242|consen  292 CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYTPE-CLDSLGATTF-----V  362 (569)
T ss_pred             HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccchHH-HHHhhcceee-----e
Confidence            7789999999999999999999999999999875555442   14578888888776422222 2222221111     1


Q ss_pred             HHHHhCcHHHHHHhc-----CCChHHHHHHHHHHHHHhCCchhHHHHHh--cCcHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005598          564 RIVQAGAVKHLVDLM-----DPAAGMVDKAVAVLANLATIPDGRVAIGQ--ENGIPVLVEVVELGSARGKENAAAALLQL  636 (689)
Q Consensus       564 ~lv~~G~v~~Lv~LL-----~~~~~v~e~Al~~L~nLa~~~e~r~~i~~--~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L  636 (689)
                      ..|++-.+..++.+|     +.+..+...++.+..|+|.--+....+..  ...+|.|-..+....|++|..+..+|..+
T Consensus       363 ~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l  442 (569)
T KOG1242|consen  363 AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGAL  442 (569)
T ss_pred             eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence            123445555566665     34566778899999999984433333332  12345555555556899999999999877


Q ss_pred             hhCCHhhHHHHHhCCChHHHHHhhhc
Q 005598          637 CTNSSRFCSMVLQEGAVPPLVALSQS  662 (689)
Q Consensus       637 ~~~~~~~~~~lv~~g~i~~L~~LL~~  662 (689)
                      -..-....    ..+.++.|.+.+..
T Consensus       443 ~e~~g~~~----f~d~~p~l~e~~~~  464 (569)
T KOG1242|consen  443 LERLGEVS----FDDLIPELSETLTS  464 (569)
T ss_pred             HHHHHhhc----ccccccHHHHhhcc
Confidence            65433111    14445555554433

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=96.48  E-value=0.0024  Score=54.17  Aligned_cols=47  Identities=26%  Similarity=0.450  Sum_probs=34.2

Q ss_pred             cccccccccccC-ceec-CCCccccHHHHHHHHhcC--CCCCCCCCCcCCC
Q 005598          101 FCCPLSLELMTD-PVIV-ASGQTYERAFIKKWIDLG--LFVCPKTRQTLAH  147 (689)
Q Consensus       101 f~CpI~~~lm~d-PV~~-~~G~ty~r~~I~~~l~~~--~~~cP~t~~~l~~  147 (689)
                      -.||.|...=.| |++. .|||.|-..||.+|+...  ..+||.||++...
T Consensus        33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            345555444334 6554 799999999999999863  4679999998643

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.0018  Score=68.07  Aligned_cols=47  Identities=21%  Similarity=0.492  Sum_probs=39.7

Q ss_pred             CCccccccccccc-cCc------------eecCCCccccHHHHHHHHhcCCCCCCCCCCcC
Q 005598           98 PSDFCCPLSLELM-TDP------------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTL  145 (689)
Q Consensus        98 p~~f~CpI~~~lm-~dP------------V~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l  145 (689)
                      -++-+|-||++-| .-|            -.+||||.+--+|++.|+++. .+||.||.|+
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCPICr~p~  344 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCPICRRPV  344 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCCcccCcc
Confidence            3567899999764 433            579999999999999999976 7899999995

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.47  E-value=0.0062  Score=43.89  Aligned_cols=38  Identities=29%  Similarity=0.527  Sum_probs=35.4

Q ss_pred             ccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005598          437 DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS  474 (689)
Q Consensus       437 ~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs  474 (689)
                      .++..+.+.|+++.|+.+|.+.+.+++..++++|.||+
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            47888999999999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.46  E-value=0.24  Score=57.17  Aligned_cols=153  Identities=12%  Similarity=0.102  Sum_probs=100.7

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCccc--HHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-c
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDN--RMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN-N  479 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~n--r~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~-~  479 (689)
                      ...+...+..|++.++.++.+|+..+..++.--...  -..+...|.|  |..-|....+++.-..+.+|..+...-. .
T Consensus       798 pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~  875 (1172)
T KOG0213|consen  798 PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMT  875 (1172)
T ss_pred             HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhcccc
Confidence            456677888899999999999999998887632111  1223333443  5677777888887666666655532110 0


Q ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHH-hhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598          480 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG-RSGAIGPLVDLLGNGTPRGKKDAATALFNLSI  557 (689)
Q Consensus       480 k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~-~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~  557 (689)
                      +..--..+.+|.|.-+|++....++++.+..+..++....-..... ...+--.|+++|+..+..++++|..++..++.
T Consensus       876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak  954 (1172)
T KOG0213|consen  876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK  954 (1172)
T ss_pred             ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            0000124789999999999999999999999999876332111111 11334467888888888888888877776654

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=96.44  E-value=0.51  Score=56.37  Aligned_cols=136  Identities=21%  Similarity=0.259  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHhhccCcccHHHHHh----cCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHH
Q 005598          421 QREATAELRLLAKHNMDNRMVIAN----CGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHV  495 (689)
Q Consensus       421 q~~Al~~L~~La~~s~~nr~~i~~----~g~I~~Lv~lL~s-~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~l  495 (689)
                      ...++.+|+++.+.++.-...+..    .|-++.++.+|.. .+++++.-|+.++..+..+.++-..++..+.+..|+.+
T Consensus      1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred             HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHH
Confidence            456788999998877755444432    2778888888865 57889999999998888888888899999999999999


Q ss_pred             HcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcC-CCHHHHHHHHHHHHhhhh
Q 005598          496 LQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-GTPRGKKDAATALFNLSI  557 (689)
Q Consensus       496 L~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~-~~~~v~~~Al~aL~nLs~  557 (689)
                      |.+ -+..|+.++.+|..|+++.+....-.+.|++..+.+++-. .+++.+..++..+..|..
T Consensus      1822 LHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1822 LHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred             Hhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence            954 5778999999999999988877777788888888877754 467777778888877765

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.41  E-value=0.0069  Score=43.63  Aligned_cols=40  Identities=35%  Similarity=0.395  Sum_probs=35.7

Q ss_pred             chhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598          518 EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI  557 (689)
Q Consensus       518 ~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~  557 (689)
                      ++++..+.+.|+++.|+++|.+++..+++.++++|.||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            3467778889999999999998899999999999999863

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.41  E-value=0.022  Score=56.53  Aligned_cols=124  Identities=19%  Similarity=0.213  Sum_probs=92.1

Q ss_pred             CCCHHHHHHHHHHHHhhhhchHHHHHHHH----------------hCcHHHHHHhc-C------CChHHHHHHHHHHHHH
Q 005598          539 NGTPRGKKDAATALFNLSIYHENKARIVQ----------------AGAVKHLVDLM-D------PAAGMVDKAVAVLANL  595 (689)
Q Consensus       539 ~~~~~v~~~Al~aL~nLs~~~~n~~~lv~----------------~G~v~~Lv~LL-~------~~~~v~e~Al~~L~nL  595 (689)
                      +........++.+|.||+..+..+..++.                ...+..|++++ .      ....-.+....+|.||
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            33445566788899999998887776554                23567777776 3      2234567889999999


Q ss_pred             hCCchhHHHHHhc--Cc--HHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHh--CCChHHHHHhhhc
Q 005598          596 ATIPDGRVAIGQE--NG--IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ--EGAVPPLVALSQS  662 (689)
Q Consensus       596 a~~~e~r~~i~~~--g~--v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~--~g~i~~L~~LL~~  662 (689)
                      +..+++|..+.+.  +.  +..|+..+.+.+..-+.-++.+|.|+|.....+...+-.  .++++.|+.-+..
T Consensus        86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaG  158 (192)
T PF04063_consen   86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAG  158 (192)
T ss_pred             cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccC
Confidence            9999999999864  34  677888888888899999999999999988755444432  3677777776663

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=0.0022  Score=68.47  Aligned_cols=46  Identities=17%  Similarity=0.452  Sum_probs=39.3

Q ss_pred             cccccccccccC--ce-ecCCCccccHHHHHHHHhcCCCCCCCCCCcCC
Q 005598          101 FCCPLSLELMTD--PV-IVASGQTYERAFIKKWIDLGLFVCPKTRQTLA  146 (689)
Q Consensus       101 f~CpI~~~lm~d--PV-~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~  146 (689)
                      +.|-||++-+++  -| ++||+|.|=..||..||......||+|++...
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~  278 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR  278 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence            799999998875  33 58999999999999999987677999998543

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=96.38  E-value=0.1  Score=61.51  Aligned_cols=263  Identities=16%  Similarity=0.159  Sum_probs=141.9

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHH-HhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccHHHHHH
Q 005598          408 KLVEDLKSTSLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIAN  485 (689)
Q Consensus       408 ~Lv~~L~s~~~~~q~~Al~~L~-~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k~~i~~  485 (689)
                      .|++.+.+.+.+.+..|+.-|. .|-+.+ .+-..=.+...+..|+++|...+.+||..|+.+|+-|+.. .+.+  +  
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkds-i~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~--l--   83 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKDS-IKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQ--L--   83 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhhh-hhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHH--H--
Confidence            7889999999999988887654 332221 1111112236788999999999999999999999988621 1111  0  


Q ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHH-hcccCchhHHHHHhh----CChHHHHHhhcC--CCHHHHHHHHHHHHhhhhc
Q 005598          486 ANAIEPLIHVLQTGSPEARENAAATLF-SLSVIEDNKIKIGRS----GAIGPLVDLLGN--GTPRGKKDAATALFNLSIY  558 (689)
Q Consensus       486 ~g~l~~Lv~lL~s~~~~~~~~Aa~aL~-nLs~~~~~k~~I~~~----g~I~~Lv~LL~~--~~~~v~~~Al~aL~nLs~~  558 (689)
                      ...+..|+.-+-++....+.-+.-.|. .++..+.........    .+.+.|...+..  ....++..++..+..+-..
T Consensus        84 e~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr  163 (1233)
T KOG1824|consen   84 ETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR  163 (1233)
T ss_pred             HHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence            012333333322343333333332222 222212111111111    223334443332  2334566666666544321


Q ss_pred             -hHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhcc-CCHHHHHHHHHHHHH
Q 005598          559 -HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQ  635 (689)
Q Consensus       559 -~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s-~s~~~~e~Av~aL~~  635 (689)
                       ..--.. ...+....++.-| .....+..+|+.+|+.|+....+- ..  .+.+..|++-|.. ........-+.+|..
T Consensus       164 ~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~-ly--~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~  239 (1233)
T KOG1824|consen  164 FGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD-LY--VELIEHLLKGLSNRTQMSATRTYIQCLAA  239 (1233)
T ss_pred             hcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH-HH--HHHHHHHHhccCCCCchHHHHHHHHHHHH
Confidence             110000 2234445555545 455677889999999998733221 11  1234444444432 345555556777777


Q ss_pred             HhhCCHhhHHHHHhCCChHHHHHhh---hcCCHHHHHHHHHHHHHhhc
Q 005598          636 LCTNSSRFCSMVLQEGAVPPLVALS---QSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       636 L~~~~~~~~~~lv~~g~i~~L~~LL---~~~~~~vr~~A~~lL~~L~~  680 (689)
                      +|+.... +-----...++.+..+.   +.++++.|+.....|..|-.
T Consensus       240 i~r~ag~-r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~  286 (1233)
T KOG1824|consen  240 ICRQAGH-RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR  286 (1233)
T ss_pred             HHHHhcc-hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence            8776542 11111146788888888   66778999999888877644

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=96.37  E-value=0.0031  Score=63.78  Aligned_cols=62  Identities=21%  Similarity=0.274  Sum_probs=47.2

Q ss_pred             ccccccccccccCcee-cCCCccccHHHHHHHHhcC-CCCCCCCCCc----CCCCCCCccHHHHHHHH
Q 005598          100 DFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLG-LFVCPKTRQT----LAHTTLIPNYTVKALIA  161 (689)
Q Consensus       100 ~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~l~~~-~~~cP~t~~~----l~~~~l~pn~~l~~~i~  161 (689)
                      +++|||+......||+ ..|||.|+|..|+.++... ...||+-+..    +....+.+...++..|+
T Consensus       176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr  243 (262)
T KOG2979|consen  176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIR  243 (262)
T ss_pred             cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHH
Confidence            4899999999999998 5899999999999998752 2459998766    22345556555655554

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.30  E-value=0.068  Score=61.90  Aligned_cols=170  Identities=16%  Similarity=0.163  Sum_probs=97.7

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc-HH
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN-KS  481 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~-k~  481 (689)
                      ...+..|.+.+++.++.++..|+..+.++-.   .+.......|.++.|-.++...++.|..+|+.+|..+.....+ -.
T Consensus       120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~  196 (734)
T KOG1061|consen  120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL  196 (734)
T ss_pred             HHHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence            4677889999999999999999999888855   3556677789999999999988999999999999998643322 00


Q ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHH
Q 005598          482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN  561 (689)
Q Consensus       482 ~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n  561 (689)
                      .......+..++..|..-+.=.+.....++.+-...+. +..   ...+..+...|.+.+..+...+...+.++......
T Consensus       197 ~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~  272 (734)
T KOG1061|consen  197 LELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-REA---EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ  272 (734)
T ss_pred             ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hhH---HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence            00011122222222222111122222222222211111 110   13345555556666666666666666666554444


Q ss_pred             HHHHHHhCcHHHHHHhcC
Q 005598          562 KARIVQAGAVKHLVDLMD  579 (689)
Q Consensus       562 ~~~lv~~G~v~~Lv~LL~  579 (689)
                      ....+-...-+.|+.+++
T Consensus       273 ~~~~~~~K~~~pl~tlls  290 (734)
T KOG1061|consen  273 VNELLFKKVAPPLVTLLS  290 (734)
T ss_pred             HHHHHHHHhcccceeeec
Confidence            333333344444555553

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.29  E-value=0.071  Score=51.04  Aligned_cols=120  Identities=15%  Similarity=0.161  Sum_probs=97.9

Q ss_pred             HHHHhhCChHHHHHhhcCCC------HHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhcC---CChHHHHHHHHHH
Q 005598          522 IKIGRSGAIGPLVDLLGNGT------PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD---PAAGMVDKAVAVL  592 (689)
Q Consensus       522 ~~I~~~g~I~~Lv~LL~~~~------~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~---~~~~v~e~Al~~L  592 (689)
                      ..+...+++..|++++.++.      ......++.++..|-...-..+..+....|..++.++.   .+..+...|+++|
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL   84 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL   84 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence            34567799999999999875      36777889999998777666788888888999999882   2578889999999


Q ss_pred             HHHhCCchh-HHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH
Q 005598          593 ANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS  641 (689)
Q Consensus       593 ~nLa~~~e~-r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~  641 (689)
                      .++..+... ...+.++=.++.|+..|+..++..+.+|+..+-.|....+
T Consensus        85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~  134 (160)
T PF11841_consen   85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD  134 (160)
T ss_pred             HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence            999997776 4555555569999999999999999999999988766544

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=0.083  Score=60.09  Aligned_cols=181  Identities=22%  Similarity=0.212  Sum_probs=114.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccC-----ch--h
Q 005598          448 INILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-----ED--N  520 (689)
Q Consensus       448 I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~-----~~--~  520 (689)
                      +.-|+.+....+..|+..|+.+|+.|+..-..-     .......++.|++.+..+|..|+.+++-.+..     +.  .
T Consensus       200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~-----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~  274 (823)
T KOG2259|consen  200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLS-----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE  274 (823)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHhhccccccc-----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence            334778888889999999999998886422111     12355677888888899999998777655431     11  1


Q ss_pred             HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc-hHHHHH-----------------------------------
Q 005598          521 KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKAR-----------------------------------  564 (689)
Q Consensus       521 k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~~n~~~-----------------------------------  564 (689)
                      ...+ ...++..+.+.+++.+..++..|+.+|..+..- .+...+                                   
T Consensus       275 e~kl-~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~  353 (823)
T KOG2259|consen  275 EEKL-KDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW  353 (823)
T ss_pred             hhhh-HHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence            1111 224666777777777777777777776655331 111111                                   


Q ss_pred             ---------------HHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchh-HHHHHhcCcHHHHHHHhccCCHHHHH
Q 005598          565 ---------------IVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKE  627 (689)
Q Consensus       565 ---------------lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~-r~~i~~~g~v~~Lv~lL~s~s~~~~e  627 (689)
                                     ++..|+.-+++.=| ++--++...|+..+..|+.+..+ ..     .++..|+.++...-..++.
T Consensus       354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL  428 (823)
T KOG2259|consen  354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRL  428 (823)
T ss_pred             cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHH
Confidence                           11222233333333 22346777888888888874332 22     2467889999888899999


Q ss_pred             HHHHHHHHHhhC
Q 005598          628 NAAAALLQLCTN  639 (689)
Q Consensus       628 ~Av~aL~~L~~~  639 (689)
                      .|+.+|..++.+
T Consensus       429 ~ai~aL~~Is~~  440 (823)
T KOG2259|consen  429 KAIFALTMISVH  440 (823)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988876

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.24  E-value=0.0029  Score=63.11  Aligned_cols=54  Identities=22%  Similarity=0.438  Sum_probs=46.5

Q ss_pred             CccccccccccccCce----ecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCcc
Q 005598           99 SDFCCPLSLELMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN  153 (689)
Q Consensus        99 ~~f~CpI~~~lm~dPV----~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn  153 (689)
                      ..|.||+|.+.+.+-+    +-+|||+|+..|.++.+... ..||+|+.+++.+++++-
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-~v~pv~d~plkdrdiI~L  277 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-MVDPVTDKPLKDRDIIGL  277 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-ccccCCCCcCcccceEee
Confidence            4689999999988764    34899999999999998865 669999999999998873

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.23  E-value=0.36  Score=49.09  Aligned_cols=178  Identities=16%  Similarity=0.119  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHhcccCchh--HHHHHhhCChHHH
Q 005598          461 KIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG-----SPEARENAAATLFSLSVIEDN--KIKIGRSGAIGPL  533 (689)
Q Consensus       461 ~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~-----~~~~~~~Aa~aL~nLs~~~~~--k~~I~~~g~I~~L  533 (689)
                      .-..+|+.+|--++.+++.|..+.++..--.|-.+|..+     ...+|..++++|..|..+++.  -..+...+++|.+
T Consensus        94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC  173 (293)
T KOG3036|consen   94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC  173 (293)
T ss_pred             chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence            345677777777788999999999886555555566532     367899999999999885543  3334567999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHH--------hCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHH
Q 005598          534 VDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ--------AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRV  603 (689)
Q Consensus       534 v~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~--------~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~  603 (689)
                      ++.+..|+...+..|..++..+-.++.+-..+..        .-.+..++.-+  .+...+...++.+.-+|+.++..|.
T Consensus       174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~  253 (293)
T KOG3036|consen  174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA  253 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence            9999999999999999999888777665433332        12222233323  3667788899999999999998888


Q ss_pred             HHHh---cCcHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 005598          604 AIGQ---ENGIPVLVEVVELGSARGKENAAAALLQLCT  638 (689)
Q Consensus       604 ~i~~---~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~  638 (689)
                      ++..   .+.-..-...+...++..+..-...+.++|.
T Consensus       254 aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~  291 (293)
T KOG3036|consen  254 ALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCT  291 (293)
T ss_pred             HHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhcc
Confidence            8753   1111111222223455555555555555553

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.17  E-value=0.066  Score=60.89  Aligned_cols=215  Identities=19%  Similarity=0.163  Sum_probs=136.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---C---c
Q 005598          405 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN---D---N  478 (689)
Q Consensus       405 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~---~---~  478 (689)
                      ...-|+.+..+.+..++..|+..|..|.....-.+      -.....+.++..++..|+..|+.++..+..-   +   +
T Consensus       199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~------~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e  272 (823)
T KOG2259|consen  199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSK------ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE  272 (823)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccH------HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence            33447888888888889999998888765332221      2345567788888888988887776655421   1   1


Q ss_pred             cHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCch---------------------------------------
Q 005598          479 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED---------------------------------------  519 (689)
Q Consensus       479 ~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~---------------------------------------  519 (689)
                      +-+.-....++..++..+.+.+..+|..|+.+|..+-...+                                       
T Consensus       273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~  352 (823)
T KOG2259|consen  273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE  352 (823)
T ss_pred             hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence            11111112456667777776666666666665543321100                                       


Q ss_pred             ------------hHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHH
Q 005598          520 ------------NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVD  586 (689)
Q Consensus       520 ------------~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e  586 (689)
                                  ....|...|+-..+|.-|.++-.+++++|+..++.|+.+...    ....++..|++++ ++-..+..
T Consensus       353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VRL  428 (823)
T KOG2259|consen  353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDEIEVVRL  428 (823)
T ss_pred             ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHHH
Confidence                        112233445666777777777789999999999999885443    2234678899999 55566778


Q ss_pred             HHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHH
Q 005598          587 KAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL  634 (689)
Q Consensus       587 ~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~  634 (689)
                      .|+.+|..|+.+-.     ++..-++.+++.|...+..+++..-..|.
T Consensus       429 ~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~  471 (823)
T KOG2259|consen  429 KAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLK  471 (823)
T ss_pred             HHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999998887522     23334566666776667776665444443

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.16  E-value=0.002  Score=62.20  Aligned_cols=45  Identities=16%  Similarity=0.275  Sum_probs=40.4

Q ss_pred             cccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCC
Q 005598          101 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA  146 (689)
Q Consensus       101 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~  146 (689)
                      |.|-||.+-++.||++.|||.||-.|-.+-++.+ .+|-+|+....
T Consensus       197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~t~  241 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-DECGVCGKATY  241 (259)
T ss_pred             eeehhchhhccchhhhhcchhHHHHHHHHHhccC-Ccceecchhhc
Confidence            9999999999999999999999999988888766 66999987643

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.12  E-value=0.029  Score=49.73  Aligned_cols=66  Identities=20%  Similarity=0.221  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhc--cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhC
Q 005598          585 VDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVE--LGSARGKENAAAALLQLCTNSSRFCSMVLQE  650 (689)
Q Consensus       585 ~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~--s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~  650 (689)
                      ....+.+|+||+. ++..+..+.+.|+++.++....  ..+|..+++|+.++.+||.++++++..|.+.
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            4567889999998 6777899999999999998863  4689999999999999999999988888753

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.08  E-value=0.39  Score=49.57  Aligned_cols=190  Identities=17%  Similarity=0.157  Sum_probs=126.0

Q ss_pred             CHHHHHHHHHHHHHhhccCcccHHHHHh--cCcHHHHHHhh-------cCCC--H---HHHHHHHHHHHHhhcCCccHHH
Q 005598          417 SLDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDML-------HSSE--T---KIQENAVTALLNLSINDNNKSA  482 (689)
Q Consensus       417 ~~~~q~~Al~~L~~La~~s~~nr~~i~~--~g~I~~Lv~lL-------~s~~--~---~v~~~Al~aL~nLs~~~~~k~~  482 (689)
                      +++.+..|+..|..--... .+-..+.-  .|.+..|++=+       ....  +   .-..+|+..|--++.+++.|..
T Consensus         8 ~~~~Re~Al~eLsk~r~~~-~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESF-PDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC--TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcc-cchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence            4666777777766543322 22332222  37777776532       2211  2   2345666666667889999999


Q ss_pred             HHHcCCHHHHHHHHcCCC-----HHHHHHHHHHHHhcccCch--hHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhh
Q 005598          483 IANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIED--NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL  555 (689)
Q Consensus       483 i~~~g~l~~Lv~lL~s~~-----~~~~~~Aa~aL~nLs~~~~--~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL  555 (689)
                      +.++...--|.-+|+..+     ..+|..+.+++..|...++  .-..+...+++|.+++.+..++.-.+..|.-.+..+
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            999876666666665432     5689999999999987443  344456679999999999999999999999999998


Q ss_pred             hhchHHHHHHHH--------hCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHh
Q 005598          556 SIYHENKARIVQ--------AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQ  607 (689)
Q Consensus       556 s~~~~n~~~lv~--------~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~  607 (689)
                      -.++.+-..+..        ..++..++.-+  +++..+....+.+-..|+.++..++++.+
T Consensus       167 L~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~  228 (262)
T PF04078_consen  167 LLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ  228 (262)
T ss_dssp             HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred             HcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence            887765444332        23334444433  57788889999999999999998888763

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.06  E-value=0.26  Score=55.71  Aligned_cols=153  Identities=17%  Similarity=0.135  Sum_probs=101.3

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc--ccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccH
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM--DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK  480 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~--~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k  480 (689)
                      ...|...+..|++..+.++..|+.....|+.-=.  .....+...|.|  |..-|....+++.-..+.++..+......+
T Consensus       603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~  680 (975)
T COG5181         603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFR  680 (975)
T ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence            4678889999999999999999988887765211  011223333332  455666678888776666666653211111


Q ss_pred             H-HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHh-hCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598          481 S-AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSI  557 (689)
Q Consensus       481 ~-~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~-~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~  557 (689)
                      . .--..|.+|.|.-+|++....+..+.+..+..++.......-..+ ..+--.|+++|++.+.+++++|..++..++.
T Consensus       681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence            1 011247899999999999999999999999888764332111111 1334568888888899999988877776654

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=96.04  E-value=0.2  Score=59.12  Aligned_cols=233  Identities=13%  Similarity=0.112  Sum_probs=135.5

Q ss_pred             hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHH-HHHHHHHHhhcCCccH
Q 005598          402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE-NAVTALLNLSINDNNK  480 (689)
Q Consensus       402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~-~Al~aL~nLs~~~~~k  480 (689)
                      ....+..|++.|.+.+.++|..|+++|.-|+..-++.+  +.  ..+..|+.-+-++-...+. .++.....++.-+...
T Consensus        45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~--le--~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~  120 (1233)
T KOG1824|consen   45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQ--LE--TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSS  120 (1233)
T ss_pred             hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHH--HH--HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcc
Confidence            35688999999999999999999999999985432222  11  2344444432222222222 2222222222222222


Q ss_pred             HHHHHcCCHHHHHHHHcCC-----C-HHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHH
Q 005598          481 SAIANANAIEPLIHVLQTG-----S-PEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF  553 (689)
Q Consensus       481 ~~i~~~g~l~~Lv~lL~s~-----~-~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~  553 (689)
                      .......+++.+...|...     + ..++..++..|..+-. ....-.. ...+.+..++.-|.+....+++.|+.+|.
T Consensus       121 ~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~  199 (1233)
T KOG1824|consen  121 SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALG  199 (1233)
T ss_pred             ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHH
Confidence            2233344555555555432     1 2355555555554322 1111111 23356667777777778899999999999


Q ss_pred             hhhhchHHHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHh---ccCCHHHHHH
Q 005598          554 NLSIYHENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV---ELGSARGKEN  628 (689)
Q Consensus       554 nLs~~~~n~~~lv~~G~v~~Lv~LL~--~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL---~s~s~~~~e~  628 (689)
                      .|+..-..   .+-.+++..|++=|.  .....+..-+.+|+.+|.....|-----...+|.+.+..   ...+++.++.
T Consensus       200 ~la~~~~~---~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~  276 (1233)
T KOG1824|consen  200 HLASSCNR---DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREY  276 (1233)
T ss_pred             HHHHhcCH---HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHH
Confidence            99874321   233456677777773  233344455666666666433332212234688888888   6678999999


Q ss_pred             HHHHHHHHhhCCHh
Q 005598          629 AAAALLQLCTNSSR  642 (689)
Q Consensus       629 Av~aL~~L~~~~~~  642 (689)
                      +..+|-.+...++.
T Consensus       277 ~lQale~fl~rcp~  290 (1233)
T KOG1824|consen  277 CLQALESFLRRCPK  290 (1233)
T ss_pred             HHHHHHHHHHhChh
Confidence            99999998887774

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.02  E-value=0.32  Score=56.35  Aligned_cols=264  Identities=15%  Similarity=0.150  Sum_probs=168.4

Q ss_pred             hHHHHHHHHhcC--CCHHHHHHHHHHHHHh---hcc---CcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhh-
Q 005598          404 TQVRKLVEDLKS--TSLDTQREATAELRLL---AKH---NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS-  474 (689)
Q Consensus       404 ~~V~~Lv~~L~s--~~~~~q~~Al~~L~~L---a~~---s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs-  474 (689)
                      ..+-.++..++.  ++..++..|+.+|.+-   ++.   ++..|+.     +....+..-++++.+++..|..+|..+. 
T Consensus       172 ~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~-----iMqvvcEatq~~d~~i~~aa~~ClvkIm~  246 (859)
T KOG1241|consen  172 DILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY-----IMQVVCEATQSPDEEIQVAAFQCLVKIMS  246 (859)
T ss_pred             HHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce-----eeeeeeecccCCcHHHHHHHHHHHHHHHH
Confidence            455666766664  4667888888887643   221   1222222     3445666777889999999999998874 


Q ss_pred             cCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCc-h----hH-----------HHHHh---hCChHHHHH
Q 005598          475 INDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-D----NK-----------IKIGR---SGAIGPLVD  535 (689)
Q Consensus       475 ~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~-~----~k-----------~~I~~---~g~I~~Lv~  535 (689)
                      ..-+....-+....+..-+.-+++.++++...++..=.+++..+ +    ..           ..+..   .+++|.|++
T Consensus       247 LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~  326 (859)
T KOG1241|consen  247 LYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLE  326 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHH
Confidence            22233333334445555566778889999888887766665311 0    00           11111   267788888


Q ss_pred             hhcC-------CCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-----CCChHHHHHHHHHHHHHhCCchh-H
Q 005598          536 LLGN-------GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-----DPAAGMVDKAVAVLANLATIPDG-R  602 (689)
Q Consensus       536 LL~~-------~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-----~~~~~v~e~Al~~L~nLa~~~e~-r  602 (689)
                      +|..       ++....++|..+|.-++..       ++..+|+.++.++     .++..-.+.|+-+++.+-..++. +
T Consensus       327 ~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~  399 (859)
T KOG1241|consen  327 LLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDK  399 (859)
T ss_pred             HHHhCCCCcccccCcHHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhh
Confidence            8863       1345677777777766542       3445555666555     46667788888888887776554 3


Q ss_pred             HHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHh-CCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598          603 VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       603 ~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~-~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~  680 (689)
                      -.-+..+++|.++.++...+-.++..+++.|..++...+..+.-... ...++.|+.=+ .+.|++..++.|.+-.|..
T Consensus       400 Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Lae  477 (859)
T KOG1241|consen  400 LTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAE  477 (859)
T ss_pred             hhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHH
Confidence            33345678999999999888899999999999999887743322211 22222222222 3458999999998888874

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.96  E-value=0.0045  Score=61.86  Aligned_cols=37  Identities=35%  Similarity=0.598  Sum_probs=33.3

Q ss_pred             CCCccccccccccccCceecCCCccccHHHHHHHHhc
Q 005598           97 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL  133 (689)
Q Consensus        97 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~  133 (689)
                      |-+.=+|.+|++.++|||+.+.||.|||.||.+++..
T Consensus        40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila   76 (303)
T KOG3039|consen   40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA   76 (303)
T ss_pred             cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence            5555689999999999999999999999999999864

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=95.91  E-value=0.41  Score=50.39  Aligned_cols=220  Identities=15%  Similarity=0.131  Sum_probs=137.1

Q ss_pred             CHHHHHHHHHHHHHhhccCcccHHHH-HhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCccHHHHHHc-CCHHHH
Q 005598          417 SLDTQREATAELRLLAKHNMDNRMVI-ANCGAINILVDMLHS--SETKIQENAVTALLNLSINDNNKSAIANA-NAIEPL  492 (689)
Q Consensus       417 ~~~~q~~Al~~L~~La~~s~~nr~~i-~~~g~I~~Lv~lL~s--~~~~v~~~Al~aL~nLs~~~~~k~~i~~~-g~l~~L  492 (689)
                      ++-.+.-|+.++.++... ++.|..+ ++...-..++.+++.  .+.++|.+.+-+++-|+.++.....+-.. ..+..|
T Consensus       162 ~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl  240 (432)
T COG5231         162 DFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL  240 (432)
T ss_pred             HHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            444456677888888774 4555544 344445566777755  35678999999999998777665444332 566777


Q ss_pred             HHHHcCCC-HHHHHHHHHHHHhcccCchhHHH---HHhhCChHHHHHhhcCC---CHHHHHHHHH---HH----Hhhhhc
Q 005598          493 IHVLQTGS-PEARENAAATLFSLSVIEDNKIK---IGRSGAIGPLVDLLGNG---TPRGKKDAAT---AL----FNLSIY  558 (689)
Q Consensus       493 v~lL~s~~-~~~~~~Aa~aL~nLs~~~~~k~~---I~~~g~I~~Lv~LL~~~---~~~v~~~Al~---aL----~nLs~~  558 (689)
                      +.+.+... ..+..-.++.+.++.. ...+..   +.-.|-+...|++|..+   +.+.+...-.   .|    ..||..
T Consensus       241 i~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f  319 (432)
T COG5231         241 IAIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF  319 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            77777543 4566667777777765 222333   33346566777777643   2222221110   00    011111


Q ss_pred             ------------------------hHHHHHHHH--hCcHHHHHHhcCC--ChHHHHHHHHHHHHHhC-CchhHHHHHhcC
Q 005598          559 ------------------------HENKARIVQ--AGAVKHLVDLMDP--AAGMVDKAVAVLANLAT-IPDGRVAIGQEN  609 (689)
Q Consensus       559 ------------------------~~n~~~lv~--~G~v~~Lv~LL~~--~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g  609 (689)
                                              +.|...+.+  -.++..|.++|..  ......-|+.=+..+.+ .|+++..+...|
T Consensus       320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg  399 (432)
T COG5231         320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG  399 (432)
T ss_pred             HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence                                    223344444  3467778888832  22233445555555554 789999999999


Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 005598          610 GIPVLVEVVELGSARGKENAAAALLQLCT  638 (689)
Q Consensus       610 ~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~  638 (689)
                      +-..++.++.+.+++++..|..++..+..
T Consensus       400 ~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         400 VKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            99999999999999999999999877643

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=95.79  E-value=0.0034  Score=67.13  Aligned_cols=34  Identities=15%  Similarity=0.447  Sum_probs=30.3

Q ss_pred             CCccccccccccccCceecCCCccccHHHHHHHH
Q 005598           98 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWI  131 (689)
Q Consensus        98 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l  131 (689)
                      .+++.||||...|+||++++|||+.||.|-..-+
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~   35 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNIL   35 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence            4689999999999999999999999999976443

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.79  E-value=0.68  Score=54.70  Aligned_cols=144  Identities=19%  Similarity=0.225  Sum_probs=112.0

Q ss_pred             hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 005598          402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS  481 (689)
Q Consensus       402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~  481 (689)
                      +....+.+++.+.+.+.++++-.-..|..+++..+  ..++   -++..+..=|++.++.++-.|++.|..|-..     
T Consensus        53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~l---LavNti~kDl~d~N~~iR~~AlR~ls~l~~~-----  122 (757)
T COG5096          53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELAL---LAVNTIQKDLQDPNEEIRGFALRTLSLLRVK-----  122 (757)
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHH---HHHHHHHhhccCCCHHHHHHHHHHHHhcChH-----
Confidence            45677888888888898888877778888888765  2222   2577777888889999999999998776311     


Q ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc
Q 005598          482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY  558 (689)
Q Consensus       482 ~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~  558 (689)
                       -.-...++++.+.+.++++.+|..|+-+|+.+=..  .+..+.+.|.+..+..++.+.++.+..+|+.+|..+...
T Consensus       123 -el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         123 -ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             -HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence             12235688899999999999999999999988432  233444568999999999999999999999999987543

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=95.77  E-value=0.027  Score=43.75  Aligned_cols=55  Identities=27%  Similarity=0.161  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhh
Q 005598          501 PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL  555 (689)
Q Consensus       501 ~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL  555 (689)
                      +.+|..|+++|.+++........-....+++.|+.+|++.+..++..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4688999999999876555444445568899999999999999999999999875

...

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=95.76  E-value=0.27  Score=56.74  Aligned_cols=150  Identities=11%  Similarity=0.148  Sum_probs=101.3

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHH--HH-HhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHH
Q 005598          529 AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR--IV-QAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVA  604 (689)
Q Consensus       529 ~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~--lv-~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~  604 (689)
                      ++..++..|++.++.++..|+.++..|+.--.++..  +. ..|+  +|.+.| ...+++.-..+++|..+...-..-..
T Consensus       800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km  877 (1172)
T KOG0213|consen  800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM  877 (1172)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence            345567788899999999999999988875444432  22 2333  477777 45566666666666655542111000


Q ss_pred             H-HhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598          605 I-GQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       605 i-~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~  680 (689)
                      . =-.+.+|.|.-+|++...+++++++..+..+|..+++....--=..+---|+.+|.+.+..+|+.|...+..+.+
T Consensus       878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak  954 (1172)
T KOG0213|consen  878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK  954 (1172)
T ss_pred             CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            0 013578999999999999999999999999999987522111112233457888888888899998877666554

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.76  E-value=0.0069  Score=61.68  Aligned_cols=49  Identities=27%  Similarity=0.358  Sum_probs=41.1

Q ss_pred             CCccccccccccccCceec-CCCccccHHHHHHHHhcC-CCCCCCCCCcCC
Q 005598           98 PSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLG-LFVCPKTRQTLA  146 (689)
Q Consensus        98 p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~l~~~-~~~cP~t~~~l~  146 (689)
                      -....||+|++-..-|.+. +|||.||.-||..-+... ..+||.|+.+..
T Consensus       237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            3568999999999999986 599999999999987643 357999998764

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.72  E-value=1.1  Score=52.47  Aligned_cols=106  Identities=10%  Similarity=0.055  Sum_probs=66.4

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCccHHH
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSA  482 (689)
Q Consensus       404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~-~~~~k~~  482 (689)
                      ...+.+.++|+..++.++..|+-+...+-+..|.--..     +++....+|...+..|...++..+..++. +++.-..
T Consensus       142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~  216 (866)
T KOG1062|consen  142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSY  216 (866)
T ss_pred             HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHH
Confidence            56678888888899999999888888777766544333     35566667766666666666777766653 2333333


Q ss_pred             HHHcCCHHHHHHHHcC---------------CCHHHHHHHHHHHHhccc
Q 005598          483 IANANAIEPLIHVLQT---------------GSPEARENAAATLFSLSV  516 (689)
Q Consensus       483 i~~~g~l~~Lv~lL~s---------------~~~~~~~~Aa~aL~nLs~  516 (689)
                      +.+  .++.|+.+|++               .++-++...+.+|.-|-.
T Consensus       217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq  263 (866)
T KOG1062|consen  217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQ  263 (866)
T ss_pred             HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcC
Confidence            322  55556665541               134566666666665544

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.72  E-value=2.4  Score=49.16  Aligned_cols=241  Identities=16%  Similarity=0.148  Sum_probs=143.1

Q ss_pred             HHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHc-CCCHH
Q 005598          424 ATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ-TGSPE  502 (689)
Q Consensus       424 Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~-s~~~~  502 (689)
                      .+...-+|+.+-+.....+.  .++..|.++|.+....++.-|+..+..|+........+-..  ...++..|+ ..+..
T Consensus       309 VLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvS  384 (938)
T KOG1077|consen  309 VLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVS  384 (938)
T ss_pred             HHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchH
Confidence            44455555555444444444  36777888888877788888888888887665555555444  777888898 56889


Q ss_pred             HHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc--------hHHH-------HHHHH
Q 005598          503 ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY--------HENK-------ARIVQ  567 (689)
Q Consensus       503 ~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~--------~~n~-------~~lv~  567 (689)
                      +|..|+..|..++.... ...|     +..|+++|.+.+..+++.-+.=+.-|+..        -+..       ...+.
T Consensus       385 irrravDLLY~mcD~~N-ak~I-----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vs  458 (938)
T KOG1077|consen  385 IRRRAVDLLYAMCDVSN-AKQI-----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVS  458 (938)
T ss_pred             HHHHHHHHHHHHhchhh-HHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccccc
Confidence            99999999999875443 3333     56777888777666666544433333330        1111       12345


Q ss_pred             hCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhHHHHHhcCc--H---------------HHHHHHh----ccCCHHHH
Q 005598          568 AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENG--I---------------PVLVEVV----ELGSARGK  626 (689)
Q Consensus       568 ~G~v~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~--v---------------~~Lv~lL----~s~s~~~~  626 (689)
                      .++...+++++-.+.++..-|+..+......+...+.++..|+  +               ..+..+|    ...++.++
T Consensus       459 deVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr  538 (938)
T KOG1077|consen  459 DEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTR  538 (938)
T ss_pred             HHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHH
Confidence            6788888888766677777666665554444444555544332  1               1222333    33566666


Q ss_pred             HHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 005598          627 ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR  679 (689)
Q Consensus       627 e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~  679 (689)
                      ..-..+...++...++....+.+     .+......-+.+++..|.+-|.+..
T Consensus       539 ~lLLtTyiKl~nl~PEi~~~v~~-----vFq~~~n~~D~ElQqRa~EYLql~k  586 (938)
T KOG1077|consen  539 ALLLTTYIKLINLFPEIKSNVQK-----VFQLYSNLIDVELQQRAVEYLQLSK  586 (938)
T ss_pred             HHHHHHHHHHHhhChhhhHHHHH-----HHHhhcccCCHHHHHHHHHHHHHHH
Confidence            66666667777766654333321     1122222245667777766555443

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=95.66  E-value=0.0039  Score=64.94  Aligned_cols=52  Identities=21%  Similarity=0.354  Sum_probs=43.1

Q ss_pred             CCCccccccccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 005598           97 IPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT  149 (689)
Q Consensus        97 ~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~  149 (689)
                      .|+.=.||+|..--.+|-++. +|.+||-.||-.|+.+ ..+||+|+.|..-.+
T Consensus       297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v~~  349 (357)
T KOG0826|consen  297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASVDH  349 (357)
T ss_pred             CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchHHH
Confidence            355678999999888888765 6999999999999995 467999998876543

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.64  E-value=0.12  Score=59.93  Aligned_cols=243  Identities=20%  Similarity=0.246  Sum_probs=150.2

Q ss_pred             hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 005598          402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS  481 (689)
Q Consensus       402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~  481 (689)
                      +....+.+++.+...+.+.+.-+--.+.+.+...+.-     ..+++..++.=..+.++.++..|++.+..+-.+.    
T Consensus        47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~----  117 (734)
T KOG1061|consen   47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK----  117 (734)
T ss_pred             hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH----
Confidence            4567889999999988887777777788888765432     2245666666556678888888877776553211    


Q ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHH
Q 005598          482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN  561 (689)
Q Consensus       482 ~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n  561 (689)
                        +-.....+|.+.+++.++.+|..|+..+.++-  ..........|.++.|-+++.+.++.+..+|+.+|..+...+.+
T Consensus       118 --i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~  193 (734)
T KOG1061|consen  118 --ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS  193 (734)
T ss_pred             --HHHHHHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence              11235678899999999999999888877763  33344455679999999999999999999999999998775432


Q ss_pred             -HHHHHHhCcHHHHHHhcCCChHHHH-HHHHHHHHHhCC-ch-hHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 005598          562 -KARIVQAGAVKHLVDLMDPAAGMVD-KAVAVLANLATI-PD-GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC  637 (689)
Q Consensus       562 -~~~lv~~G~v~~Lv~LL~~~~~v~e-~Al~~L~nLa~~-~e-~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~  637 (689)
                       -...+....+..+++.+.   +..+ .-+.+|.+++.. +. .+++.   ..+..+...|+..+..+...++.++.++.
T Consensus       194 ~~~~~l~~~~~~~lL~al~---ec~EW~qi~IL~~l~~y~p~d~~ea~---~i~~r~~p~Lqh~n~avvlsavKv~l~~~  267 (734)
T KOG1061|consen  194 VNLLELNPQLINKLLEALN---ECTEWGQIFILDCLAEYVPKDSREAE---DICERLTPRLQHANSAVVLSAVKVILQLV  267 (734)
T ss_pred             CCcccccHHHHHHHHHHHH---HhhhhhHHHHHHHHHhcCCCCchhHH---HHHHHhhhhhccCCcceEeehHHHHHHHH
Confidence             111111223333444331   1111 223344444441 11 12211   13455555666666677777777777766


Q ss_pred             hCCHhhHHHHHhCCChHHHHHhhhcCC
Q 005598          638 TNSSRFCSMVLQEGAVPPLVALSQSGT  664 (689)
Q Consensus       638 ~~~~~~~~~lv~~g~i~~L~~LL~~~~  664 (689)
                      ..-......+ -...-++|+.++....
T Consensus       268 ~~~~~~~~~~-~~K~~~pl~tlls~~~  293 (734)
T KOG1061|consen  268 KYLKQVNELL-FKKVAPPLVTLLSSES  293 (734)
T ss_pred             HHHHHHHHHH-HHHhcccceeeecccc
Confidence            6554322222 2334455555555554

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.63  E-value=0.44  Score=57.85  Aligned_cols=216  Identities=17%  Similarity=0.201  Sum_probs=127.7

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCccHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHhcccC--chhHHHHHhhCChH
Q 005598          456 HSSETKIQENAVTALLNLSINDNNKSAIANA--NAIEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIG  531 (689)
Q Consensus       456 ~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~--g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~--~~~k~~I~~~g~I~  531 (689)
                      ++.+..+|..+-.+|..++..+.......+.  .....|..-+++.....+.....+|..|-..  .+....+  ...|+
T Consensus       664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~  741 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIP  741 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence            4457889999999999998665444433332  2333444444444445555555555555321  1222222  13455


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhC------cHHHHHHhcC-----CChHHHHHHHHHHHHHhCCch
Q 005598          532 PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAG------AVKHLVDLMD-----PAAGMVDKAVAVLANLATIPD  600 (689)
Q Consensus       532 ~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G------~v~~Lv~LL~-----~~~~v~e~Al~~L~nLa~~~e  600 (689)
                      .++-.+++.+...+..|..+|..|+.    .....+.|      .+...+.++.     +...++...+-++..+...  
T Consensus       742 EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e--  815 (1176)
T KOG1248|consen  742 EVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE--  815 (1176)
T ss_pred             HHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH--
Confidence            55555588889999999999998873    11112222      3334444331     1111111113333333221  


Q ss_pred             hHHHHHhc----CcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHH
Q 005598          601 GRVAIGQE----NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS  676 (689)
Q Consensus       601 ~r~~i~~~----g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~  676 (689)
                       ...++..    +.+..+.-.|.+.++.+...|+..+..++..-+..+-.-..+-.++.++.+++..+-.+|.++..+|.
T Consensus       816 -~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle  894 (1176)
T KOG1248|consen  816 -FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE  894 (1176)
T ss_pred             -HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence             1112222    23455555567889999999999999999988754443334457899999999989999999998888


Q ss_pred             Hhhc
Q 005598          677 YFRN  680 (689)
Q Consensus       677 ~L~~  680 (689)
                      .|.+
T Consensus       895 kLir  898 (1176)
T KOG1248|consen  895 KLIR  898 (1176)
T ss_pred             HHHH
Confidence            7754

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.63  E-value=0.46  Score=54.81  Aligned_cols=130  Identities=15%  Similarity=0.147  Sum_probs=83.6

Q ss_pred             HHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCH
Q 005598          411 EDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAI  489 (689)
Q Consensus       411 ~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k~~i~~~g~l  489 (689)
                      +.+++.+....--|+..|..+...+ -.|      +.-+-++.+|.+.-+-++..|+.+|..+... ++.     -..++
T Consensus       116 kdl~S~n~ye~giAL~GLS~fvTpd-LAR------DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-----lr~~F  183 (877)
T KOG1059|consen  116 KDLNSSNVYEVGLALSGLSCIVTPD-LAR------DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-----LRPCF  183 (877)
T ss_pred             HHhccCccchhhheecccccccCch-hhH------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-----HhhhH
Confidence            4445655444445566655554422 222      3445678999999999999999999887532 221     12578


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhh
Q 005598          490 EPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSI  557 (689)
Q Consensus       490 ~~Lv~lL~s~~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~  557 (689)
                      +.|..-|.++++.++..|+.+++.|+. ++.+--     ..-|.+.++|... +.-+....+....+|+-
T Consensus       184 prL~EkLeDpDp~V~SAAV~VICELArKnPknyL-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtp  248 (877)
T KOG1059|consen  184 PRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTP  248 (877)
T ss_pred             HHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-----cccHHHHHHHhccCCCeehHHHHHHHhhccc
Confidence            999999999999999999999999986 444322     2235555555432 34444445555555554

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.61  E-value=0.8  Score=53.56  Aligned_cols=253  Identities=13%  Similarity=0.136  Sum_probs=138.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCcc----
Q 005598          405 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNN----  479 (689)
Q Consensus       405 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~-~~~~----  479 (689)
                      .+..|.+.|++.+..++-.|+..|.+++..  +   .+  ....|-+..+|++.++-++..|+.++..+-. .++.    
T Consensus       108 ltNslknDL~s~nq~vVglAL~alg~i~s~--E---ma--rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f  180 (866)
T KOG1062|consen  108 LTNSLKNDLNSSNQYVVGLALCALGNICSP--E---MA--RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF  180 (866)
T ss_pred             HHHHHHhhccCCCeeehHHHHHHhhccCCH--H---Hh--HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh
Confidence            556777888899988888899999888662  2   11  1456777788889999999999998887753 2322    


Q ss_pred             ----HHHHHHc--C----CHHHHHHHHcCCCH------HHHHHHHHHHHhcccC---chh-----HHHHHhhCChHHHHH
Q 005598          480 ----KSAIANA--N----AIEPLIHVLQTGSP------EARENAAATLFSLSVI---EDN-----KIKIGRSGAIGPLVD  535 (689)
Q Consensus       480 ----k~~i~~~--g----~l~~Lv~lL~s~~~------~~~~~Aa~aL~nLs~~---~~~-----k~~I~~~g~I~~Lv~  535 (689)
                          +..+.+.  |    ++..+.++++.+..      .+...-+..|.++...   +++     ...+.+-. +=.++.
T Consensus       181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~-iLrlLr  259 (866)
T KOG1062|consen  181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR-ILRLLR  259 (866)
T ss_pred             hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH-HHHHHH
Confidence                2233321  2    33333444433211      1222223333333220   000     00000000 011333


Q ss_pred             hhcCCCHHHHHHHHHHHHhhhhch---HHHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhH-HH-------
Q 005598          536 LLGNGTPRGKKDAATALFNLSIYH---ENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGR-VA-------  604 (689)
Q Consensus       536 LL~~~~~~v~~~Al~aL~nLs~~~---~n~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r-~~-------  604 (689)
                      +|..++++....-...|..++.+.   .|....+--.+|..++.+ .++..+...|+.+|+....+++.- ..       
T Consensus       260 iLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I-~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~  338 (866)
T KOG1062|consen  260 ILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI-RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLL  338 (866)
T ss_pred             HhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHhcCCccceeeeehhhHH
Confidence            444455555555555555555422   233333333444444444 466778888888888876655431 11       


Q ss_pred             -HH--hcCcH----HHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHH
Q 005598          605 -IG--QENGI----PVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQA  673 (689)
Q Consensus       605 -i~--~~g~v----~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~  673 (689)
                       ++  +..++    ..+++.|+..+...+..|...++.|...+  +...+     +..|+.+|...++..|...+.
T Consensus       339 r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~~m-----v~eLl~fL~~~d~~~k~~~as  407 (866)
T KOG1062|consen  339 RVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES--NVRVM-----VKELLEFLESSDEDFKADIAS  407 (866)
T ss_pred             hhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHHHH-----HHHHHHHHHhccHHHHHHHHH
Confidence             11  12222    35667777778888888888888777554  33333     456777777777777765444

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=95.55  E-value=0.16  Score=48.66  Aligned_cols=118  Identities=15%  Similarity=0.152  Sum_probs=93.7

Q ss_pred             HHHHHHhCcHHHHHHhcC-CC------hHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccC--CHHHHHHHHHH
Q 005598          562 KARIVQAGAVKHLVDLMD-PA------AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG--SARGKENAAAA  632 (689)
Q Consensus       562 ~~~lv~~G~v~~Lv~LL~-~~------~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~--s~~~~e~Av~a  632 (689)
                      ...++..|++..|+++++ ..      ..+...++.++..|-.+.-.-=.......|..++..+...  +..+...|..+
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            356788999999999993 22      3566778888888877654222345556788888888653  58889999999


Q ss_pred             HHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 005598          633 LLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR  679 (689)
Q Consensus       633 L~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~  679 (689)
                      |-+++.+++..-..+.++=-++.|+..++..++.++.+|..++..|-
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~  130 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF  130 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99999999977788878888999999999999999999999887765

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.45  E-value=0.011  Score=60.90  Aligned_cols=47  Identities=15%  Similarity=0.403  Sum_probs=38.0

Q ss_pred             ccccccccccc--Cce-ecCCCccccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005598          101 FCCPLSLELMT--DPV-IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH  147 (689)
Q Consensus       101 f~CpI~~~lm~--dPV-~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~  147 (689)
                      .-|-||+.=|.  |-+ ++||.|.|-+.||++|+..-...||+||.++.+
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            57999986552  444 589999999999999998655679999988754

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.43  E-value=1.1  Score=48.11  Aligned_cols=177  Identities=18%  Similarity=0.229  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHhhcCCccHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccC---chhHHHHHhhCChHHHH
Q 005598          460 TKIQENAVTALLNLSINDNNKSAIAN--ANAIEPLIHVLQTGSPEARENAAATLFSLSVI---EDNKIKIGRSGAIGPLV  534 (689)
Q Consensus       460 ~~v~~~Al~aL~nLs~~~~~k~~i~~--~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~---~~~k~~I~~~g~I~~Lv  534 (689)
                      ...++.++..|.++.........+.+  ...+..+.+.++.+..+-+..|+.++.-++..   ......+.+ ...+.|.
T Consensus        57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~  135 (309)
T PF05004_consen   57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELKPVLK  135 (309)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHH
Confidence            34445555555444322222222221  23567778888888765555666666555443   222333333 4667888


Q ss_pred             HhhcCCC--HHHHHHHHHHHHhhhhch----HHHHHHHHhCcHHHHHH--hcC-----------CChHHHHHHHHHHHHH
Q 005598          535 DLLGNGT--PRGKKDAATALFNLSIYH----ENKARIVQAGAVKHLVD--LMD-----------PAAGMVDKAVAVLANL  595 (689)
Q Consensus       535 ~LL~~~~--~~v~~~Al~aL~nLs~~~----~n~~~lv~~G~v~~Lv~--LL~-----------~~~~v~e~Al~~L~nL  595 (689)
                      ..+.++.  ..++..++.+|.-++...    +.....  ...+..+..  .+.           +...++..|+..++.|
T Consensus       136 ~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lL  213 (309)
T PF05004_consen  136 RILTDSSASPKARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALL  213 (309)
T ss_pred             HHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHH
Confidence            8888764  455556666666554421    111111  112221111  111           1245788899999888


Q ss_pred             hCCchh-HHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhC
Q 005598          596 ATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN  639 (689)
Q Consensus       596 a~~~e~-r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~  639 (689)
                      ...-+. .-.-.-...++.|+.+|.+.+..+|..|..+|.-|...
T Consensus       214 lt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~  258 (309)
T PF05004_consen  214 LTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL  258 (309)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            874333 21212234689999999999999999988888776543

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=95.42  E-value=1.8  Score=48.91  Aligned_cols=273  Identities=14%  Similarity=0.108  Sum_probs=146.5

Q ss_pred             hhHHHH-HHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCccH
Q 005598          403 ETQVRK-LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNNK  480 (689)
Q Consensus       403 ~~~V~~-Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~-~~~v~~~Al~aL~nLs~~~~~k  480 (689)
                      +..|+. .++-|++..+.....|+..|..++.-.-.+   -.-.|....++...... ...++..++.++++.+......
T Consensus        92 k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~---~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe  168 (858)
T COG5215          92 KEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPN---SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPE  168 (858)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCcc---ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHH
Confidence            345554 456778888888888888888887632111   00113333344433332 3457888999999998776665


Q ss_pred             HHHHHcC-CHHHHH-HHHcCC-CHHHHHHHHHHHHh-cccCchhHHHHHhh----CChHHHHHhhcCCCHHHHHHHHHHH
Q 005598          481 SAIANAN-AIEPLI-HVLQTG-SPEARENAAATLFS-LSVIEDNKIKIGRS----GAIGPLVDLLGNGTPRGKKDAATAL  552 (689)
Q Consensus       481 ~~i~~~g-~l~~Lv-~lL~s~-~~~~~~~Aa~aL~n-Ls~~~~~k~~I~~~----g~I~~Lv~LL~~~~~~v~~~Al~aL  552 (689)
                      ..+...+ .+-.++ ..++++ +..+|..|+.+|.+ |-..   +..+...    -++...++.-+.++.+++.+|..+|
T Consensus       169 ~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv---~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl  245 (858)
T COG5215         169 DLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV---QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCL  245 (858)
T ss_pred             HHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH---HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHH
Confidence            5554443 333343 345554 46789999999887 3221   1122111    1233344444556778888888888


Q ss_pred             Hhhhh-chHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCc-hhHHHHHh----------------cCcHHH
Q 005598          553 FNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP-DGRVAIGQ----------------ENGIPV  613 (689)
Q Consensus       553 ~nLs~-~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~-e~r~~i~~----------------~g~v~~  613 (689)
                      ..+.. +=..-....+.-....+...+ +.+..+...|+..+..+|..+ ++.-++..                ..++|.
T Consensus       246 ~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~  325 (858)
T COG5215         246 NKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPE  325 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHH
Confidence            77654 112112223332333333334 455666667777776666522 11111111                124666


Q ss_pred             HHHHhcc---------------------------------------------CCHHHHHHHHHHHHHHhhCCHhhHHHHH
Q 005598          614 LVEVVEL---------------------------------------------GSARGKENAAAALLQLCTNSSRFCSMVL  648 (689)
Q Consensus       614 Lv~lL~s---------------------------------------------~s~~~~e~Av~aL~~L~~~~~~~~~~lv  648 (689)
                      |+.+|.+                                             .+...++.|+.++..+..+....+..-+
T Consensus       326 lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~  405 (858)
T COG5215         326 LLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKI  405 (858)
T ss_pred             HHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhh
Confidence            6666643                                             2222334444444444433222222222


Q ss_pred             hCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 005598          649 QEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ  681 (689)
Q Consensus       649 ~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~  681 (689)
                      -..++|.+..++...+--++..++|++..+..+
T Consensus       406 V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~  438 (858)
T COG5215         406 VPQALPGIENEMSDSCLWVKSTTAWCFGAIADH  438 (858)
T ss_pred             HHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence            234567777777766667888888888777653

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.40  E-value=1  Score=45.97  Aligned_cols=146  Identities=16%  Similarity=0.153  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCC--ccHHHHHHcCCHHHH
Q 005598          420 TQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-----SETKIQENAVTALLNLSIND--NNKSAIANANAIEPL  492 (689)
Q Consensus       420 ~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s-----~~~~v~~~Al~aL~nLs~~~--~~k~~i~~~g~l~~L  492 (689)
                      -..+|+..+.-++. .++.|..|.++-.--.|-.+|..     ..+-++..++.+++.|...+  +....+...+.++..
T Consensus        95 RVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC  173 (293)
T KOG3036|consen   95 RVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC  173 (293)
T ss_pred             hHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence            34567777777787 46888888887665556666643     35668899999999997543  344556678999999


Q ss_pred             HHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhh--------CChHHH-HHhhcCCCHHHHHHHHHHHHhhhhchHHHH
Q 005598          493 IHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--------GAIGPL-VDLLGNGTPRGKKDAATALFNLSIYHENKA  563 (689)
Q Consensus       493 v~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~--------g~I~~L-v~LL~~~~~~v~~~Al~aL~nLs~~~~n~~  563 (689)
                      ++++..|+...+..|+.++-.+-.++..-..|+..        -.+..+ ..+.+.++.+..+.++++..+|+.++..+.
T Consensus       174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~  253 (293)
T KOG3036|consen  174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA  253 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence            99999999999999999998887777654443321        223333 344456789999999999999999888776


Q ss_pred             HHH
Q 005598          564 RIV  566 (689)
Q Consensus       564 ~lv  566 (689)
                      .+.
T Consensus       254 aL~  256 (293)
T KOG3036|consen  254 ALR  256 (293)
T ss_pred             HHH
Confidence            543

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.33  E-value=0.66  Score=54.82  Aligned_cols=167  Identities=20%  Similarity=0.179  Sum_probs=116.5

Q ss_pred             hcCCCHHHHHHHHHH-HHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHH
Q 005598          413 LKSTSLDTQREATAE-LRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEP  491 (689)
Q Consensus       413 L~s~~~~~q~~Al~~-L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~  491 (689)
                      +.+++...+..|++. |..++.+.+ .-      ...+-+++...+.|.+++.-.-.=|.+.+...... .+.   ++..
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~-~lL---avNt   96 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL-ALL---AVNT   96 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH-HHH---HHHH
Confidence            667777778888874 445555432 11      23455666666778777765555555555433221 111   3566


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcH
Q 005598          492 LIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAV  571 (689)
Q Consensus       492 Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v  571 (689)
                      +.+=|+++++.+|..|++++..|=.    ...  ..-+++++.+++.++++.+++.|+.|++++-.-  .+....+.|.+
T Consensus        97 i~kDl~d~N~~iR~~AlR~ls~l~~----~el--~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~  168 (757)
T COG5096          97 IQKDLQDPNEEIRGFALRTLSLLRV----KEL--LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLI  168 (757)
T ss_pred             HHhhccCCCHHHHHHHHHHHHhcCh----HHH--HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHH
Confidence            7777889999999999999987721    111  124678899999999999999999999998542  34455678888


Q ss_pred             HHHHHhc-CCChHHHHHHHHHHHHHhCC
Q 005598          572 KHLVDLM-DPAAGMVDKAVAVLANLATI  598 (689)
Q Consensus       572 ~~Lv~LL-~~~~~v~e~Al~~L~nLa~~  598 (689)
                      ..+..++ ++++.++..|+.+|..+...
T Consensus       169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         169 DILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            8888888 78888889999999988654

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=95.33  E-value=0.031  Score=43.42  Aligned_cols=55  Identities=24%  Similarity=0.149  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 005598          460 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSL  514 (689)
Q Consensus       460 ~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nL  514 (689)
                      +.++..|+++|++++........-.....++.|+.+|++.+..+|..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4688999999999875554444445567899999999999999999999999875

...

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.32  E-value=0.91  Score=53.15  Aligned_cols=242  Identities=15%  Similarity=0.156  Sum_probs=157.6

Q ss_pred             cccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHH-HhhcCCccHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHh
Q 005598          436 MDNRMVIANCGAINILVDMLHSSETKIQENAVTALL-NLSINDNNKSAIANANAIEPLIHVLQTGS-PEARENAAATLFS  513 (689)
Q Consensus       436 ~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~-nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~-~~~~~~Aa~aL~n  513 (689)
                      ..-|...++.|+...|+.+.....+.....+..+|. .+... ..+    ....++++...+.+.. .--...++.++.|
T Consensus       494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-~~~----~~~v~~~~~s~~~~d~~~~en~E~L~altn  568 (748)
T KOG4151|consen  494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-GER----SYEVVKPLDSALHNDEKGLENFEALEALTN  568 (748)
T ss_pred             HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-CCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence            345666777899999999988777777777777776 22211 000    1133444444443221 1123457788889


Q ss_pred             cccC-chhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHH-H-hCcHHHHHHhcCC-ChHHHHHHH
Q 005598          514 LSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV-Q-AGAVKHLVDLMDP-AAGMVDKAV  589 (689)
Q Consensus       514 Ls~~-~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv-~-~G~v~~Lv~LL~~-~~~v~e~Al  589 (689)
                      |+.. +..|..|...-+++.+-.++-..++..+..++..+.||...+-.-.+.+ + ...++.....++. .......++
T Consensus       569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a  648 (748)
T KOG4151|consen  569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGA  648 (748)
T ss_pred             ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhcc
Confidence            9874 4457778777666666777778899999999999999998776655444 3 3455555555532 233334555


Q ss_pred             HHHHHHhCCchh-HH-HHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHH
Q 005598          590 AVLANLATIPDG-RV-AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRA  667 (689)
Q Consensus       590 ~~L~nLa~~~e~-r~-~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~v  667 (689)
                      +++..++...++ .. ...-......++.++.+.++.+++..+.+.+++.....+....+.+...++.+..+-+-.....
T Consensus       649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~  728 (748)
T KOG4151|consen  649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPK  728 (748)
T ss_pred             ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhh
Confidence            666655554433 22 2223456788899999999999999999999977777777777777777666666544445667


Q ss_pred             HHHHHHHHHHhhcCc
Q 005598          668 KEKAQALLSYFRNQR  682 (689)
Q Consensus       668 r~~A~~lL~~L~~~~  682 (689)
                      ++.|...|...-.+.
T Consensus       729 ~~~~~~~l~~a~~~~  743 (748)
T KOG4151|consen  729 REDAAPCLSAAEEYG  743 (748)
T ss_pred             hhhhhhHHHHHHHhh
Confidence            777777766655443

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.29  E-value=2.1  Score=51.33  Aligned_cols=238  Identities=18%  Similarity=0.196  Sum_probs=143.9

Q ss_pred             HHhcCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHc----CCC----HHHHHHHH
Q 005598          442 IANCGAINILVDMLHS-----SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ----TGS----PEARENAA  508 (689)
Q Consensus       442 i~~~g~I~~Lv~lL~s-----~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~----s~~----~~~~~~Aa  508 (689)
                      +.+.|++..|+.++.+     ....+....+.+|...+.-..||..+.+.++++.|+..|.    .+.    .++.+...
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL  192 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL  192 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence            4567999999999875     2345566667777777777899999999999999998775    333    56666666


Q ss_pred             HHHHhcccCch---hHHHHH--h--------hCChHHHHHhhcCC----CHHHHHHHHHHHHhhhhchHHHHHHHHhCcH
Q 005598          509 ATLFSLSVIED---NKIKIG--R--------SGAIGPLVDLLGNG----TPRGKKDAATALFNLSIYHENKARIVQAGAV  571 (689)
Q Consensus       509 ~aL~nLs~~~~---~k~~I~--~--------~g~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v  571 (689)
                      .++..|.....   ......  .        ..-+..|++.+.+.    ++.+....+++|-+|+.....+...+-.-. 
T Consensus       193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F-  271 (802)
T PF13764_consen  193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF-  271 (802)
T ss_pred             HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH-
Confidence            66665543211   111110  1        12356666666644    578888899999999986655433221111 


Q ss_pred             HHHHHh--cCC-C---h-HHHHHHHHHHHHHhCCchh---HHHHHhcCcHHHHHHHhccC--------CHHHH-------
Q 005598          572 KHLVDL--MDP-A---A-GMVDKAVAVLANLATIPDG---RVAIGQENGIPVLVEVVELG--------SARGK-------  626 (689)
Q Consensus       572 ~~Lv~L--L~~-~---~-~v~e~Al~~L~nLa~~~e~---r~~i~~~g~v~~Lv~lL~s~--------s~~~~-------  626 (689)
                      ...+++  ++. .   . -..+..+.+...|-.+..|   ++.+++.|++...++.|...        ++.-+       
T Consensus       272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps  351 (802)
T PF13764_consen  272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS  351 (802)
T ss_pred             HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence            111122  111 1   1 1122233333334333333   68889999999888888532        23222       


Q ss_pred             -HHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCC-HHHHHHHHHHHHHhhcC
Q 005598          627 -ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT-PRAKEKAQALLSYFRNQ  681 (689)
Q Consensus       627 -e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~-~~vr~~A~~lL~~L~~~  681 (689)
                       ..+...|.-||.+... .+.++..++++.|..|=+... ..+-..|-.+|.-|+..
T Consensus       352 Lp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~  407 (802)
T PF13764_consen  352 LPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAEN  407 (802)
T ss_pred             HHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence             3477788888888764 344466677876666655553 45555666677777654

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.94  E-value=1.4  Score=50.93  Aligned_cols=105  Identities=15%  Similarity=0.153  Sum_probs=66.8

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCC--HHHHHHHHHHHHHhhcCCccH
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE--TKIQENAVTALLNLSINDNNK  480 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~--~~v~~~Al~aL~nLs~~~~~k  480 (689)
                      +..+..+-+.|.+.++..+.-|+.++.++...  +++..+.  .-|+   ++|.+.+  .-|+..|+-+|+.|-..  .-
T Consensus       110 klvin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~--sp  180 (938)
T KOG1077|consen  110 KLVINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRK--SP  180 (938)
T ss_pred             HHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhc--Cc
Confidence            45667777888889988889999999998653  3444332  2333   5555543  34666777777666422  11


Q ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 005598          481 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV  516 (689)
Q Consensus       481 ~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~  516 (689)
                      ..+--.+....++.+|.+.+..+...+...|..|+.
T Consensus       181 Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk  216 (938)
T KOG1077|consen  181 DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVK  216 (938)
T ss_pred             cccChhhHHHHHHHHhCccccceeeehHHHHHHHHH
Confidence            122223567778888887777766667776666654

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.89  E-value=0.034  Score=58.36  Aligned_cols=53  Identities=15%  Similarity=0.182  Sum_probs=43.8

Q ss_pred             CCCCC--CccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005598           94 PVPIP--SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH  147 (689)
Q Consensus        94 ~~~~p--~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~  147 (689)
                      ..+.|  ++=+||||..=--..|..||||.-|..||.+|+.+. ..|=+|+.....
T Consensus       414 ~~~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~-k~CFfCktTv~~  468 (489)
T KOG4692|consen  414 NKDLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC-KRCFFCKTTVID  468 (489)
T ss_pred             cCCCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcC-CeeeEecceeee
Confidence            34455  578999999888888999999999999999999865 569999776543

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=94.88  E-value=0.009  Score=64.68  Aligned_cols=43  Identities=26%  Similarity=0.560  Sum_probs=36.7

Q ss_pred             cccccccccccCce----ecCCCccccHHHHHHHHhcCCCCCCCCCCcCC
Q 005598          101 FCCPLSLELMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLA  146 (689)
Q Consensus       101 f~CpI~~~lm~dPV----~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~  146 (689)
                      -+||+|++=|.+-|    ++.|.|+|--.|+.+|+.   .+||+||--.+
T Consensus       176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~  222 (493)
T KOG0804|consen  176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS  222 (493)
T ss_pred             CCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence            48999999999887    368999999999999986   45999986544

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.87  E-value=0.018  Score=61.80  Aligned_cols=43  Identities=26%  Similarity=0.587  Sum_probs=37.8

Q ss_pred             cccccccccccC---ceecCCCccccHHHHHHHHhcCC--CCCCCCCC
Q 005598          101 FCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGL--FVCPKTRQ  143 (689)
Q Consensus       101 f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~l~~~~--~~cP~t~~  143 (689)
                      |.|||..+--.|   |+.+.|||+.+|.+|.+-...|.  ..||.|-.
T Consensus       335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~  382 (394)
T KOG2817|consen  335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV  382 (394)
T ss_pred             eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence            799999987766   88999999999999999998876  56999953

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.85  E-value=0.086  Score=48.00  Aligned_cols=72  Identities=19%  Similarity=0.302  Sum_probs=60.5

Q ss_pred             hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005598          403 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS  474 (689)
Q Consensus       403 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs  474 (689)
                      -..++.|++.|. +.++....-|+.-|..+++..|..|..+.+.|+-..+..++.++|++|+.+|+.++..|.
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            357899999995 456666777889999999999999999988999999999999999999999999987663

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=94.71  E-value=0.14  Score=45.39  Aligned_cols=64  Identities=20%  Similarity=0.243  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhhhh-chHHHHHHHHhCcHHHHHHhc--C-CChHHHHHHHHHHHHHhC-CchhHHHHHh
Q 005598          544 GKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM--D-PAAGMVDKAVAVLANLAT-IPDGRVAIGQ  607 (689)
Q Consensus       544 v~~~Al~aL~nLs~-~~~n~~~lv~~G~v~~Lv~LL--~-~~~~v~e~Al~~L~nLa~-~~e~r~~i~~  607 (689)
                      .+...+.+|.||+. ++.++..+.+.|+++.++...  + .++-+.+.|+.++.||+. ++++++.+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            35677889999998 667888999999999999986  3 466788999999999998 5566666654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.68  E-value=1.3  Score=51.73  Aligned_cols=257  Identities=20%  Similarity=0.223  Sum_probs=147.9

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-Cc----
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DN----  478 (689)
Q Consensus       404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~----  478 (689)
                      ...+.+-.+|++....+..+|++.+..|...+.   +.+.  .++..|-.++.+..+-++..|+++|..++.- +.    
T Consensus       245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~---r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~  319 (865)
T KOG1078|consen  245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS---RELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV  319 (865)
T ss_pred             hHHHHHHHHHhchhHHHHHHHHHHHhhccccCH---hhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence            466777788888888899999999999876432   2222  2788888889899999999999999999742 21    


Q ss_pred             -c---HHHHHHcC---CHHHHHHHHcCCCHHH----HHHHHHHHHhcccCchhHHHH-------------HhhCChHHHH
Q 005598          479 -N---KSAIANAN---AIEPLIHVLQTGSPEA----RENAAATLFSLSVIEDNKIKI-------------GRSGAIGPLV  534 (689)
Q Consensus       479 -~---k~~i~~~g---~l~~Lv~lL~s~~~~~----~~~Aa~aL~nLs~~~~~k~~I-------------~~~g~I~~Lv  534 (689)
                       |   -..|-+.+   .-..+..+|+.|....    ....+..+.+++.  +++..+             -..+.+..|-
T Consensus       320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disD--eFKivvvdai~sLc~~fp~k~~~~m~FL~  397 (865)
T KOG1078|consen  320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISD--EFKIVVVDAIRSLCLKFPRKHTVMMNFLS  397 (865)
T ss_pred             cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc--cceEEeHHHHHHHHhhccHHHHHHHHHHH
Confidence             1   12222221   3445667777776443    3333344444432  222111             0124445555


Q ss_pred             HhhcC-CCHHHHHHHHHHHHhhhh-chHHHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHH
Q 005598          535 DLLGN-GTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIP  612 (689)
Q Consensus       535 ~LL~~-~~~~v~~~Al~aL~nLs~-~~~n~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~  612 (689)
                      .+|++ +.-+.+++...+|..+.. +++.|..     ++..|.+++. +......+..+|..|...  +-....-..-+.
T Consensus       398 ~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIE-Dce~~~i~~rILhlLG~E--gP~a~~Pskyir  469 (865)
T KOG1078|consen  398 NMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIE-DCEFTQIAVRILHLLGKE--GPKAPNPSKYIR  469 (865)
T ss_pred             HHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHH-hccchHHHHHHHHHHhcc--CCCCCCcchhhH
Confidence            55553 234555555555554444 3333322     3334444441 112233444444444321  000001112244


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598          613 VLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       613 ~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~  680 (689)
                      .+...+.-.+..++..|+.+|.++...++..     ...+...|...+.+.+..+|+.|...|+.+..
T Consensus       470 ~iyNRviLEn~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~  532 (865)
T KOG1078|consen  470 FIYNRVILENAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE  532 (865)
T ss_pred             HHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence            4444444467788888999999988554422     23455567777778889999999999999884

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=94.49  E-value=1.7  Score=46.52  Aligned_cols=182  Identities=18%  Similarity=0.135  Sum_probs=96.3

Q ss_pred             cCCCHHHHHHHHHHHHhcccCchhHHHHHh--hCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc---hHHHHHHHHhCcH
Q 005598          497 QTGSPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLLGNGTPRGKKDAATALFNLSIY---HENKARIVQAGAV  571 (689)
Q Consensus       497 ~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~--~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~---~~n~~~lv~~G~v  571 (689)
                      .......|+.++..|..+....-....+..  .-.+..+.+.++.+..+-+..|+.++.-|+..   ......++ ....
T Consensus        53 ~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~  131 (309)
T PF05004_consen   53 TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EELK  131 (309)
T ss_pred             HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HHHH
Confidence            334455666666666655432222222222  24577788888888766677777777777664   12333333 3567


Q ss_pred             HHHHHhc-CCC--hHHHHHHHHHHHHHhCC-chhHHHHH-hcCcHHHHHH--Hhcc-C---------CHHHHHHHHHHHH
Q 005598          572 KHLVDLM-DPA--AGMVDKAVAVLANLATI-PDGRVAIG-QENGIPVLVE--VVEL-G---------SARGKENAAAALL  634 (689)
Q Consensus       572 ~~Lv~LL-~~~--~~v~e~Al~~L~nLa~~-~e~r~~i~-~~g~v~~Lv~--lL~s-~---------s~~~~e~Av~aL~  634 (689)
                      +.|..++ +..  ...+..++.+|+.++.. ...-..+. -...+..+..  .++. +         ++.+...|+.+-.
T Consensus       132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~  211 (309)
T PF05004_consen  132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA  211 (309)
T ss_pred             HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence            7888877 332  23334555566655441 11111111 0112221111  1221 1         2344555544443


Q ss_pred             HHhhCCHh-hHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598          635 QLCTNSSR-FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       635 ~L~~~~~~-~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~  680 (689)
                      -|...-+. .....+ ...++.|..+|.+.+..+|-.|.+.|.+|-.
T Consensus       212 lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  212 LLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            34333332 222222 3468999999999999999999998888743

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.40  E-value=0.028  Score=56.57  Aligned_cols=50  Identities=18%  Similarity=0.280  Sum_probs=41.9

Q ss_pred             CccccccccccccCcee----cCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCC
Q 005598           99 SDFCCPLSLELMTDPVI----VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI  151 (689)
Q Consensus        99 ~~f~CpI~~~lm~dPV~----~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~  151 (689)
                      ..|+|||++-.|.+-..    -+|||+|.-.++++.-   ...||+|++.+..++.+
T Consensus       110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvI  163 (293)
T KOG3113|consen  110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVI  163 (293)
T ss_pred             ceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeE
Confidence            46999999999998763    5899999999988874   35699999999987644

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.38  E-value=0.22  Score=49.58  Aligned_cols=118  Identities=13%  Similarity=0.149  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHhhcCCccHHHHHHc----------------CCHHHHHHHHcCC------CHHHHHHHHHHHHhcccCc
Q 005598          461 KIQENAVTALLNLSINDNNKSAIANA----------------NAIEPLIHVLQTG------SPEARENAAATLFSLSVIE  518 (689)
Q Consensus       461 ~v~~~Al~aL~nLs~~~~~k~~i~~~----------------g~l~~Lv~lL~s~------~~~~~~~Aa~aL~nLs~~~  518 (689)
                      .....++.+|.||+..+.....+...                .++..|+..+..|      ...-..+.+.++.|++..+
T Consensus        10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~   89 (192)
T PF04063_consen   10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP   89 (192)
T ss_pred             chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence            34566778888888776665544322                3667777666552      2445678899999999999


Q ss_pred             hhHHHHHhh--CC--hHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHh---CcHHHHHHhc
Q 005598          519 DNKIKIGRS--GA--IGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQA---GAVKHLVDLM  578 (689)
Q Consensus       519 ~~k~~I~~~--g~--I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~---G~v~~Lv~LL  578 (689)
                      +.|..+.+.  +.  +..|+.++.+.+.--+.-++.+|.|+|...+....++..   ++++.|+--|
T Consensus        90 ~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL  156 (192)
T PF04063_consen   90 EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL  156 (192)
T ss_pred             HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence            999999875  44  777888888776666777888999999988877777763   4445444433

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=94.33  E-value=1.4  Score=47.82  Aligned_cols=197  Identities=13%  Similarity=0.145  Sum_probs=141.7

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHH-----HHHhc--CcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRM-----VIANC--GAINILVDMLHSSETKIQENAVTALLNLSI  475 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~-----~i~~~--g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~  475 (689)
                      .+.+..|+..|..-+.+.+..+.....++.+.....+.     .+...  ..+..|+.--  +++++...+..+|.....
T Consensus        75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k  152 (335)
T PF08569_consen   75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK  152 (335)
T ss_dssp             HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred             hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence            46778889999888889899988888888876655543     22221  2333333333  355566677777777777


Q ss_pred             CCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhccc-CchhHHHHHh-h--CChHHHHHhhcCCCHHHHHHHHHH
Q 005598          476 NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGR-S--GAIGPLVDLLGNGTPRGKKDAATA  551 (689)
Q Consensus       476 ~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~-~~~~k~~I~~-~--g~I~~Lv~LL~~~~~~v~~~Al~a  551 (689)
                      ++.....+.....+..+...+..++-++...|..++..|-. +......... .  .++.....||.+++--+++.++..
T Consensus       153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL  232 (335)
T PF08569_consen  153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL  232 (335)
T ss_dssp             SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred             hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence            77767777888888889999999999999999999988644 4444333333 2  677888999999999999999999


Q ss_pred             HHhhhhchHHHHHHHH----hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchh
Q 005598          552 LFNLSIYHENKARIVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG  601 (689)
Q Consensus       552 L~nLs~~~~n~~~lv~----~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~  601 (689)
                      |..|-.+..|...|..    ..-+..++.+| +....++-.|..++.....+|..
T Consensus       233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K  287 (335)
T PF08569_consen  233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK  287 (335)
T ss_dssp             HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred             HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence            9999999888765544    56788888888 67788899999999988776543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.29  E-value=3.8  Score=48.16  Aligned_cols=207  Identities=16%  Similarity=0.147  Sum_probs=131.1

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHH-hhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Q 005598          407 RKLVEDLKSTSLDTQREATAELRL-LAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN  485 (689)
Q Consensus       407 ~~Lv~~L~s~~~~~q~~Al~~L~~-La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~  485 (689)
                      ..|..+|.+.....+..|...|.. ++++. ..      ...+|..++...+.+.+++.-.---|...+....+-..   
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~-dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL---  107 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGK-DV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL---  107 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhcCC-cH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee---
Confidence            567788888887888888885554 45532 21      24577888888888988877655445555533222111   


Q ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc-hHHHHH
Q 005598          486 ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKAR  564 (689)
Q Consensus       486 ~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~~n~~~  564 (689)
                       =-|..+-+-|+++++.+|..|+++|..+-      ..+...=++-++-+...+..+.+++.|+.||-.|-.- ++.+.+
T Consensus       108 -LSIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q  180 (968)
T KOG1060|consen  108 -LSINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ  180 (968)
T ss_pred             -eeHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH
Confidence             13566778899999999999999998772      1111111122233344567899999999999988663 343333


Q ss_pred             HHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhC
Q 005598          565 IVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN  639 (689)
Q Consensus       565 lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~  639 (689)
                           .+..+-.|| +.+..++-.|+.+...+|-  +. -.++ ++-...|-.+|...++..|-..+..|..-|+.
T Consensus       181 -----L~e~I~~LLaD~splVvgsAv~AF~evCP--er-ldLI-HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~  247 (968)
T KOG1060|consen  181 -----LEEVIKKLLADRSPLVVGSAVMAFEEVCP--ER-LDLI-HKNYRKLCRLLPDVDEWGQVVLINMLTRYARH  247 (968)
T ss_pred             -----HHHHHHHHhcCCCCcchhHHHHHHHHhch--hH-HHHh-hHHHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence                 334555566 5666677777777777664  22 2222 23356666777667777777777777666653

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.21  E-value=0.024  Score=60.83  Aligned_cols=62  Identities=19%  Similarity=0.469  Sum_probs=50.1

Q ss_pred             ccccccccccccCce-----ecCCCccccHHHHHHHHhcC-CCCCCCCCCcCCCCCCCccHHHHHHHH
Q 005598          100 DFCCPLSLELMTDPV-----IVASGQTYERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPNYTVKALIA  161 (689)
Q Consensus       100 ~f~CpI~~~lm~dPV-----~~~~G~ty~r~~I~~~l~~~-~~~cP~t~~~l~~~~l~pn~~l~~~i~  161 (689)
                      ..+||||++-..=|+     ++.|||-|--.||++|+... ...||.|.-.-+..++.|-+.+|...+
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~   71 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAM   71 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHH
Confidence            468999999887775     57899999999999999522 234999998888888999888876544

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=94.19  E-value=4.1  Score=46.25  Aligned_cols=226  Identities=12%  Similarity=0.029  Sum_probs=135.7

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHH----cCC-CHHHHHHHHHHHHhcccCchhHHHHHh
Q 005598          452 VDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVL----QTG-SPEARENAAATLFSLSVIEDNKIKIGR  526 (689)
Q Consensus       452 v~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL----~s~-~~~~~~~Aa~aL~nLs~~~~~k~~I~~  526 (689)
                      ++.|.+..++.-..|..+|..++.-+      .-.+..|-|+..+    ..+ ....+.+++.++.+.+........+..
T Consensus       100 l~aL~s~epr~~~~Aaql~aaIA~~E------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~  173 (858)
T COG5215         100 LRALKSPEPRFCTMAAQLLAAIARME------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQM  173 (858)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHHHhh------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHH
Confidence            45566666776666777776665221      0123444444433    333 356888999999999887666555544


Q ss_pred             h-CChHHHHH-hhcCC-CHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-----CCChHHHHHHHHHHHHHhC-
Q 005598          527 S-GAIGPLVD-LLGNG-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-----DPAAGMVDKAVAVLANLAT-  597 (689)
Q Consensus       527 ~-g~I~~Lv~-LL~~~-~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-----~~~~~v~e~Al~~L~nLa~-  597 (689)
                      . .++-.++. -++.+ +..++.+|+.+|.+-+.  ..+..+..++-...++...     .++.++...|.++|..|.. 
T Consensus       174 sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~--fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~L  251 (858)
T COG5215         174 SNVILFAIVMGALKNETTSAVRLAALKALMDSLM--FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMML  251 (858)
T ss_pred             hhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH--HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHH
Confidence            4 33333333 34544 67888899999998322  2233344445445555544     3567888899999887754 


Q ss_pred             CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHh----------------CCChHHHHHhhh
Q 005598          598 IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ----------------EGAVPPLVALSQ  661 (689)
Q Consensus       598 ~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~----------------~g~i~~L~~LL~  661 (689)
                      .-.--+...+..........+++.++.+...|+..-..+|...-+.--.+.+                ..++|-|+.||.
T Consensus       252 yY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~  331 (858)
T COG5215         252 YYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLE  331 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHH
Confidence            1111223333333455566678899999999998876777654321111111                236888999987


Q ss_pred             cCC------H-HHHHHHHHHHHHhhcCcCCC
Q 005598          662 SGT------P-RAKEKAQALLSYFRNQRHGN  685 (689)
Q Consensus       662 ~~~------~-~vr~~A~~lL~~L~~~~~~~  685 (689)
                      ..+      . .+...|..+|.++.....++
T Consensus       332 ~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~  362 (858)
T COG5215         332 KQGEDYYGDDWNPSMAASSCLQLFAQLKGDK  362 (858)
T ss_pred             hcCCCccccccchhhhHHHHHHHHHHHhhhH
Confidence            632      1 36677888998887654443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=94.13  E-value=0.31  Score=42.92  Aligned_cols=68  Identities=16%  Similarity=0.215  Sum_probs=55.4

Q ss_pred             CcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHh--CCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 005598          609 NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ--EGAVPPLVALSQSGTPRAKEKAQALLSYFR  679 (689)
Q Consensus       609 g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~--~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~  679 (689)
                      ..++.++..+...+.+++..|+.+|++++....   ..++.  ..++..|..++...++.+|..|.-+-++|+
T Consensus        27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~---~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk   96 (97)
T PF12755_consen   27 EILPPVLKCFDDQDSRVRYYACEALYNISKVAR---GEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK   96 (97)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence            467889999999999999999999999997654   23332  467889999999999999988877766654

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=94.11  E-value=0.8  Score=52.04  Aligned_cols=233  Identities=13%  Similarity=0.115  Sum_probs=126.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc---HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHH-
Q 005598          448 INILVDMLHSSETKIQENAVTALLNLSINDNN---KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK-  523 (689)
Q Consensus       448 I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~---k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~-  523 (689)
                      |..++.+|++..+.++..|+.....|+.--.+   -..+...|  ..|.+-|....+++.-..+.+++.+......+.. 
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq  683 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ  683 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence            44455677788888888888887777522111   11122212  2244556666788877777777777543332211 


Q ss_pred             HHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHH-hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchh
Q 005598          524 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG  601 (689)
Q Consensus       524 I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~-~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~  601 (689)
                      ---.|++|.|..+|++....+..+....+..+|.+.....-..+ -.+.--|+++| +.++++...|...++.++..-..
T Consensus       684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP  763 (975)
T COG5181         684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP  763 (975)
T ss_pred             CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH
Confidence            11248999999999999999999998888888875432211111 11222345555 44566666666555554431110


Q ss_pred             ----------------HH---------HHHhcC----cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHh-hHHHHHhCC
Q 005598          602 ----------------RV---------AIGQEN----GIPVLVEVVELGSARGKENAAAALLQLCTNSSR-FCSMVLQEG  651 (689)
Q Consensus       602 ----------------r~---------~i~~~g----~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~-~~~~lv~~g  651 (689)
                                      ++         .+.+..    ++|.|+.=-...+..+|.-...+++.+-..-.+ ....+  .-
T Consensus       764 qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv--y~  841 (975)
T COG5181         764 QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV--YS  841 (975)
T ss_pred             HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH--HH
Confidence                            00         111221    223332222334556666555555554433221 11111  12


Q ss_pred             ChHHHHHhhhcCCHHHHHHHHHHHHHhhcCcCC
Q 005598          652 AVPPLVALSQSGTPRAKEKAQALLSYFRNQRHG  684 (689)
Q Consensus       652 ~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~~~  684 (689)
                      +.|.|-..|...++.-|.-|..++++|.=...|
T Consensus       842 itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g  874 (975)
T COG5181         842 ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG  874 (975)
T ss_pred             hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence            345555566666777777888888887654433

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=93.96  E-value=5.8  Score=43.80  Aligned_cols=96  Identities=13%  Similarity=0.244  Sum_probs=75.4

Q ss_pred             HHH-cCCHHHHHHHHcCCC---HHHHHHHHHHHHhcccCchh-HHHHHhhCChHHHHHhhc-CC---CHHHHHHHHHHHH
Q 005598          483 IAN-ANAIEPLIHVLQTGS---PEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLG-NG---TPRGKKDAATALF  553 (689)
Q Consensus       483 i~~-~g~l~~Lv~lL~s~~---~~~~~~Aa~aL~nLs~~~~~-k~~I~~~g~I~~Lv~LL~-~~---~~~v~~~Al~aL~  553 (689)
                      +++ ...+..|..++++..   ..+...|+.++..+..++.. -..|.+.|.++.+++.+. .+   +.++....-.+|.
T Consensus       101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~  180 (379)
T PF06025_consen  101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS  180 (379)
T ss_pred             ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence            444 455666777887753   66778888888888765554 445666799999999988 54   5677777777999


Q ss_pred             hhhhchHHHHHHHHhCcHHHHHHhc
Q 005598          554 NLSIYHENKARIVQAGAVKHLVDLM  578 (689)
Q Consensus       554 nLs~~~~n~~~lv~~G~v~~Lv~LL  578 (689)
                      .||.+......+.+.+.++.+++++
T Consensus       181 AicLN~~Gl~~~~~~~~l~~~f~if  205 (379)
T PF06025_consen  181 AICLNNRGLEKVKSSNPLDKLFEIF  205 (379)
T ss_pred             HHhcCHHHHHHHHhcChHHHHHHHh
Confidence            9999999999999999999999988

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=93.75  E-value=1.8  Score=47.50  Aligned_cols=246  Identities=17%  Similarity=0.185  Sum_probs=137.0

Q ss_pred             hhhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC-CCH-HHHHHHHHHHHHhhcCCc
Q 005598          402 IETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SET-KIQENAVTALLNLSINDN  478 (689)
Q Consensus       402 ~~~~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s-~~~-~v~~~Al~aL~nLs~~~~  478 (689)
                      ..+.|..++..|.+ .....++.++-.|..-+. ++..|..+..+|.+..++..+.. .+. ..-..++.++.-++.+..
T Consensus        19 f~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~   97 (361)
T PF07814_consen   19 FADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL   97 (361)
T ss_pred             HHHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc
Confidence            35678888888883 345667777777777777 67899999999999999999944 333 233344444555555555


Q ss_pred             cHHHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhc---------CCCHHHHHHH
Q 005598          479 NKSAIANANAIEPLIHVLQTGSP-EARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG---------NGTPRGKKDA  548 (689)
Q Consensus       479 ~k~~i~~~g~l~~Lv~lL~s~~~-~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~---------~~~~~v~~~A  548 (689)
                      .-..+.+.+.+..++++|..... ......-      .....+-..+ ....+..+.+++.         ......+..|
T Consensus        98 ~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~-~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~la  170 (361)
T PF07814_consen   98 NMHLLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKV-QQKSRSLCKELLSSGSSWKSPKPPELSPQTLA  170 (361)
T ss_pred             chhhhhchhHHHHHHHHhccccccccccchh------hhhhhhhhHH-HHHHHHHHHHHHhccccccccCCcccccccHH
Confidence            55555566677777888871100 0000000      0000000000 0111222222221         1122344455


Q ss_pred             HHHHHhhhh------------c---hHHHHHHHHhCcHHHHHHhcC----CC-------------hHHHHHHHHHHHHHh
Q 005598          549 ATALFNLSI------------Y---HENKARIVQAGAVKHLVDLMD----PA-------------AGMVDKAVAVLANLA  596 (689)
Q Consensus       549 l~aL~nLs~------------~---~~n~~~lv~~G~v~~Lv~LL~----~~-------------~~v~e~Al~~L~nLa  596 (689)
                      +.+|..++.            .   +--+..+...|++..+++++.    ..             -...+.++.+|.+.+
T Consensus       171 ll~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T  250 (361)
T PF07814_consen  171 LLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVT  250 (361)
T ss_pred             HHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHH
Confidence            555555531            1   112556677888888888762    10             123467889999877


Q ss_pred             C-CchhHHHHHhc--CcHHH-HHHHhcc---CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHH
Q 005598          597 T-IPDGRVAIGQE--NGIPV-LVEVVEL---GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPP  655 (689)
Q Consensus       597 ~-~~e~r~~i~~~--g~v~~-Lv~lL~s---~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~  655 (689)
                      . +.+++..+...  +.++. +..++..   ........++.+|.|+..+++..+..+...+....
T Consensus       251 ~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~  316 (361)
T PF07814_consen  251 FLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQ  316 (361)
T ss_pred             hcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccc
Confidence            6 44556655543  23333 3333332   23344678999999999999888777776544333

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.72  E-value=0.068  Score=41.05  Aligned_cols=45  Identities=18%  Similarity=0.328  Sum_probs=25.6

Q ss_pred             ccccccccccccCcee-cCCCcc--ccHHHHHHHHh-cCCCCCCCCCCc
Q 005598          100 DFCCPLSLELMTDPVI-VASGQT--YERAFIKKWID-LGLFVCPKTRQT  144 (689)
Q Consensus       100 ~f~CpI~~~lm~dPV~-~~~G~t--y~r~~I~~~l~-~~~~~cP~t~~~  144 (689)
                      .+.|||+...|+-||- ..|-|.  ||-....+... .+.-.||.|+++
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            3789999999999997 468876  77755555444 344569999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=93.68  E-value=0.46  Score=41.84  Aligned_cols=68  Identities=22%  Similarity=0.277  Sum_probs=49.4

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHh
Q 005598          528 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLA  596 (689)
Q Consensus       528 g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa  596 (689)
                      .++++++..+.+.+.+++..|+.+|+|++..........-..++..|.+++ +++.. +..++.+|.+|-
T Consensus        27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~ll   95 (97)
T PF12755_consen   27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN-VRSAAELLDRLL   95 (97)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHh
Confidence            678999999999999999999999999986443322222367788888888 44444 555556666653

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.68  E-value=0.57  Score=54.75  Aligned_cols=193  Identities=17%  Similarity=0.177  Sum_probs=133.0

Q ss_pred             CCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH-hcccCchhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHH
Q 005598          476 NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLF-SLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALF  553 (689)
Q Consensus       476 ~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~-nLs~~~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~  553 (689)
                      ....+...+..|+...|+++...+....+..+..+|. .+....+ +    ....++.+...+... ...-...++.++.
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-~----~~~v~~~~~s~~~~d~~~~en~E~L~alt  567 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-R----SYEVVKPLDSALHNDEKGLENFEALEALT  567 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-c----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence            3444566778899999999999888888888888887 2221111 0    114556665555543 2344557899999


Q ss_pred             hhhh-chHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHH-Hh-cCcHHHHHHHhccCCHHHHHHH
Q 005598          554 NLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAI-GQ-ENGIPVLVEVVELGSARGKENA  629 (689)
Q Consensus       554 nLs~-~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i-~~-~g~v~~Lv~lL~s~s~~~~e~A  629 (689)
                      ||+. +...+++++..-+++.+-.++ +++...+..++..+.||..++.--+.. ++ ...++.....+..........+
T Consensus       568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~  647 (748)
T KOG4151|consen  568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG  647 (748)
T ss_pred             cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence            9988 445677888877777766665 677778889999999999988765443 44 3456777777766666667777


Q ss_pred             HHHHHHHhhCCHhhHHHHHh-CCChHHHHHhhhcCCHHHHHHHHH
Q 005598          630 AAALLQLCTNSSRFCSMVLQ-EGAVPPLVALSQSGTPRAKEKAQA  673 (689)
Q Consensus       630 v~aL~~L~~~~~~~~~~lv~-~g~i~~L~~LL~~~~~~vr~~A~~  673 (689)
                      +.++..+.......+..+.+ ......+..+++++...++.....
T Consensus       648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~  692 (748)
T KOG4151|consen  648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLV  692 (748)
T ss_pred             cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhh
Confidence            77777677776666664333 466777888888887777765444

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=93.65  E-value=2.4  Score=51.89  Aligned_cols=265  Identities=15%  Similarity=0.155  Sum_probs=140.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC----CccH
Q 005598          405 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN----DNNK  480 (689)
Q Consensus       405 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~----~~~k  480 (689)
                      .+..-++.|+.  .+.+.+|+..|..|+.-.. .-  ..-..++|.++.++.....+|+..|+.+|..+-..    +..-
T Consensus       426 ~lts~IR~lk~--~~tK~~ALeLl~~lS~~i~-de--~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d  500 (1431)
T KOG1240|consen  426 VLTSCIRALKT--IQTKLAALELLQELSTYID-DE--VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD  500 (1431)
T ss_pred             HHHHHHHhhhc--chhHHHHHHHHHHHhhhcc-hH--HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence            44444555544  3467889999999876321 11  11225799999999999999999999998876321    2222


Q ss_pred             HHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHhcccCch----hHHHHHhhC------------------------ChH
Q 005598          481 SAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIED----NKIKIGRSG------------------------AIG  531 (689)
Q Consensus       481 ~~i~~~g~l~~Lv~lL~s~-~~~~~~~Aa~aL~nLs~~~~----~k~~I~~~g------------------------~I~  531 (689)
                      ..|.-.-.+|.|-.++.+. ...+|..-|..|..|+....    ....+...|                        .+.
T Consensus       501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~  580 (1431)
T KOG1240|consen  501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVE  580 (1431)
T ss_pred             chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHH
Confidence            3444456777788888773 34455554555544432100    000000001                        111


Q ss_pred             -HHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcC
Q 005598          532 -PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQEN  609 (689)
Q Consensus       532 -~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g  609 (689)
                       ..+.||.+..+-+++.-+..|.-||..-.-..  ...=+++.|+.+| +.+..+.-.-...+.-++..-..|  -+++.
T Consensus       581 ~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~sey  656 (1431)
T KOG1240|consen  581 QMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEY  656 (1431)
T ss_pred             HHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHH
Confidence             22333334344455544445555544211000  0011344555555 333222222222222222211111  12345


Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598          610 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       610 ~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~  680 (689)
                      .+|.|.+-|..+.+.+...|..+|.-||..+--.+..+++  .++...-+|-..+.-+|+.+..++-...+
T Consensus       657 llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  657 LLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             HHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence            6788888888889999999999999998876422222222  23344445556777788888876655544

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=93.58  E-value=3.9  Score=40.03  Aligned_cols=93  Identities=17%  Similarity=0.195  Sum_probs=70.7

Q ss_pred             CHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHH
Q 005598          417 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVL  496 (689)
Q Consensus       417 ~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL  496 (689)
                      ++.++.+++..+..|+..-+.    +++ ..++.+...|.++++.|+..|+.+|..|...+-.|   .+...+..++..|
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~----~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik---~k~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN----LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK---VKGQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH----HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee---ehhhhhHHHHHHH
Confidence            467888999999999875432    222 46888999999999999999999999986443221   1112347788888


Q ss_pred             cCCCHHHHHHHHHHHHhcccC
Q 005598          497 QTGSPEARENAAATLFSLSVI  517 (689)
Q Consensus       497 ~s~~~~~~~~Aa~aL~nLs~~  517 (689)
                      .+.+++++..|...+..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            899999999999999988654

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.54  E-value=0.037  Score=42.85  Aligned_cols=47  Identities=11%  Similarity=0.079  Sum_probs=34.9

Q ss_pred             ccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 005598          100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT  149 (689)
Q Consensus       100 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~  149 (689)
                      +..|=.+...=...++++|||..|+.|-.-+   +-+-||+|+.++...+
T Consensus         7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD   53 (55)
T ss_pred             ceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence            3456667777677889999999999884333   3344999999987653

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=93.51  E-value=0.032  Score=59.47  Aligned_cols=46  Identities=22%  Similarity=0.325  Sum_probs=39.8

Q ss_pred             ccccccccccCceecCCCccccHHHHHHHHhcC-CCCCCCCCCcCCC
Q 005598          102 CCPLSLELMTDPVIVASGQTYERAFIKKWIDLG-LFVCPKTRQTLAH  147 (689)
Q Consensus       102 ~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~-~~~cP~t~~~l~~  147 (689)
                      .|-||-+==+|=-+-||||-.|-.|+..|.... +.+||+||..+.-
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG  417 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence            699999988886677999999999999998654 7889999977654

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=93.46  E-value=0.35  Score=40.25  Aligned_cols=65  Identities=14%  Similarity=0.161  Sum_probs=56.8

Q ss_pred             HHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhcC
Q 005598          545 KKDAATALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQEN  609 (689)
Q Consensus       545 ~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g  609 (689)
                      .+.|++|+.+++..+.....+-+.++++.++++.  .+--.++--|+.+|..++...++.+.+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            5789999999999888888888889999999998  3556777889999999999999999887765

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=93.40  E-value=0.93  Score=46.85  Aligned_cols=145  Identities=16%  Similarity=0.138  Sum_probs=107.3

Q ss_pred             HHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHhhcC--CccHHHHHHcCCHHHHHH
Q 005598          422 REATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE-----TKIQENAVTALLNLSIN--DNNKSAIANANAIEPLIH  494 (689)
Q Consensus       422 ~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~-----~~v~~~Al~aL~nLs~~--~~~k~~i~~~g~l~~Lv~  494 (689)
                      .+|+..+.-+|. +++.|..|.++...-.|..+|+..+     +.++..++.+++.|...  .+....+...+.+|..++
T Consensus        68 cnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr  146 (262)
T PF04078_consen   68 CNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLR  146 (262)
T ss_dssp             HHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHH
T ss_pred             HHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHH
Confidence            467777778888 6789999999988888888886543     45778888899888754  344556677899999999


Q ss_pred             HHcCCCHHHHHHHHHHHHhcccCchhHHHHHh--------hCChHHHHHh-hcCCCHHHHHHHHHHHHhhhhchHHHHHH
Q 005598          495 VLQTGSPEARENAAATLFSLSVIEDNKIKIGR--------SGAIGPLVDL-LGNGTPRGKKDAATALFNLSIYHENKARI  565 (689)
Q Consensus       495 lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~--------~g~I~~Lv~L-L~~~~~~v~~~Al~aL~nLs~~~~n~~~l  565 (689)
                      .++.|+.-.+..|..++..+-.++..-..++.        ..++..+|.- .+..+++..+..+++-..|+.++.++..+
T Consensus       147 ~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL  226 (262)
T PF04078_consen  147 IMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREAL  226 (262)
T ss_dssp             HHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHH
Confidence            99999999999999999988777765444432        1344444443 34668999999999999999999888876


Q ss_pred             HH
Q 005598          566 VQ  567 (689)
Q Consensus       566 v~  567 (689)
                      ..
T Consensus       227 ~~  228 (262)
T PF04078_consen  227 RQ  228 (262)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.37  E-value=0.68  Score=48.30  Aligned_cols=42  Identities=31%  Similarity=0.639  Sum_probs=36.3

Q ss_pred             cccccccccccC---ceecCCCccccHHHHHHHHhcCCC--CCCCCC
Q 005598          101 FCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGLF--VCPKTR  142 (689)
Q Consensus       101 f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~l~~~~~--~cP~t~  142 (689)
                      |+||+..+.-.|   ||.+.|||..-+.++.+--++|..  .||.|.
T Consensus       337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP  383 (396)
T COG5109         337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP  383 (396)
T ss_pred             eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence            899999988776   899999999999999888877643  499994

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=93.36  E-value=7  Score=41.59  Aligned_cols=167  Identities=14%  Similarity=0.145  Sum_probs=109.9

Q ss_pred             hHHHHHH-HHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--CccH
Q 005598          404 TQVRKLV-EDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN--DNNK  480 (689)
Q Consensus       404 ~~V~~Lv-~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~--~~~k  480 (689)
                      +.+..|| ..+++.++.++..|+.+|..++--+.+   ...  ..++.+...+..++..++..|+.+|..+...  ....
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~a~--~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---LAK--EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---HHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            5566555 778899999999999999998875532   111  3577788888778899999999999888531  1111


Q ss_pred             H-------HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCC----CHHHHHHHH
Q 005598          481 S-------AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG----TPRGKKDAA  549 (689)
Q Consensus       481 ~-------~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~----~~~v~~~Al  549 (689)
                      .       .......++.+...|.+.+++++..|+..++.|-.......   ...++..|+-+--++    +...+..-.
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~  177 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS  177 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence            1       12234577788889998999999999999988754332211   123444444443222    344444444


Q ss_pred             HHHHhhhhchHHHHHHHHhCcHHHHHHhc
Q 005598          550 TALFNLSIYHENKARIVQAGAVKHLVDLM  578 (689)
Q Consensus       550 ~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL  578 (689)
                      ..+-..+..+...+..+....++.+..++
T Consensus       178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~  206 (298)
T PF12719_consen  178 VFFPVYASSSPENQERLAEAFLPTLRTLS  206 (298)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            45556666666556667777777777766

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=93.35  E-value=14  Score=40.08  Aligned_cols=197  Identities=12%  Similarity=0.067  Sum_probs=140.6

Q ss_pred             HHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccHH-----HHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005598          442 IANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS-----AIANA--NAIEPLIHVLQTGSPEARENAAATLFS  513 (689)
Q Consensus       442 i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k~-----~i~~~--g~l~~Lv~lL~s~~~~~~~~Aa~aL~n  513 (689)
                      +...+.+..|+..|..-+-+.+..++.+..++... ...+.     .+...  ..+..|+.--.  ++++...+...|..
T Consensus        72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRe  149 (335)
T PF08569_consen   72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHH
Confidence            44458899999999888889999999999888643 22222     22211  23333333322  46666777888888


Q ss_pred             cccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh-chHHHHHHHHh---CcHHHHHHhc-CCChHHHHHH
Q 005598          514 LSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQA---GAVKHLVDLM-DPAAGMVDKA  588 (689)
Q Consensus       514 Ls~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~~n~~~lv~~---G~v~~Lv~LL-~~~~~v~e~A  588 (689)
                      ....+.....|.....+..+.+.+..++-++...|..++..|-. ++.....++..   ..+.....+| +++--+...+
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs  229 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS  229 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence            88888777778788888889999999999999999999998665 45555666653   4556666777 4555667899


Q ss_pred             HHHHHHHhCCchhHHHHHh----cCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCC
Q 005598          589 VAVLANLATIPDGRVAIGQ----ENGIPVLVEVVELGSARGKENAAAALLQLCTNS  640 (689)
Q Consensus       589 l~~L~nLa~~~e~r~~i~~----~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~  640 (689)
                      +.+|+.|-..+.+...+..    ..-+..++.+|++.+..++..|..+.--...+.
T Consensus       230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence            9999999998888766653    234888899999999999999999887766654

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=93.32  E-value=0.85  Score=47.28  Aligned_cols=95  Identities=15%  Similarity=0.227  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhc-cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhh
Q 005598          584 MVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ  661 (689)
Q Consensus       584 v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~-s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~  661 (689)
                      ....|+.+|.-++- ++..+..+.+...+..|+.+|. ...+.++-.++.+|..+...++.+...+-+.+|+..++.+++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            34567788888776 8889999999999999999995 467899999999999999999999999999999999999999


Q ss_pred             cCC--HHHHHHHHHHHHHh
Q 005598          662 SGT--PRAKEKAQALLSYF  678 (689)
Q Consensus       662 ~~~--~~vr~~A~~lL~~L  678 (689)
                      +..  ..+|-|+.+.|-..
T Consensus       187 ~~~~~~~~r~K~~EFL~fy  205 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFY  205 (257)
T ss_pred             cccccHHHhHHHHHHHHHH
Confidence            874  67888888855443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.12  E-value=1.7  Score=52.10  Aligned_cols=253  Identities=15%  Similarity=0.201  Sum_probs=151.5

Q ss_pred             HHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhh-cCCccHHHHHHcCCHHHHHHHHcCCC----
Q 005598          426 AELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS-INDNNKSAIANANAIEPLIHVLQTGS----  500 (689)
Q Consensus       426 ~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs-~~~~~k~~i~~~g~l~~Lv~lL~s~~----  500 (689)
                      .+|..|.+.+.+|...+.++.++..++.++-+  .+-+...+.++.-|. .++..    +....+-.++..|+++-    
T Consensus       664 DcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq----vhhqelmalVdtLksgmvt~I  737 (2799)
T KOG1788|consen  664 DCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ----VHHQELMALVDTLKSGMVTRI  737 (2799)
T ss_pred             HHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc----ccHHHHHHHHHHHHhcceecc
Confidence            46667778888999999999888888888733  233333444444442 22221    11223445666666531    


Q ss_pred             --------HHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHhhcC----------CCHHHHHHHHHHHHhh-----h
Q 005598          501 --------PEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGN----------GTPRGKKDAATALFNL-----S  556 (689)
Q Consensus       501 --------~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~----------~~~~v~~~Al~aL~nL-----s  556 (689)
                              ..+....++++|.+.. +...+..+++.+++..|..+|..          ++.-+...-...|+.+     +
T Consensus       738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc  817 (2799)
T KOG1788|consen  738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC  817 (2799)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence                    2345566778887754 45567778888888887777641          1222222333333332     3


Q ss_pred             hchHHHHHHH-------------HhC---------cHHHHHHhc-C--CChHHH--HHHHHHHHHHhC------Cc----
Q 005598          557 IYHENKARIV-------------QAG---------AVKHLVDLM-D--PAAGMV--DKAVAVLANLAT------IP----  599 (689)
Q Consensus       557 ~~~~n~~~lv-------------~~G---------~v~~Lv~LL-~--~~~~v~--e~Al~~L~nLa~------~~----  599 (689)
                      .++.|+.++.             ..|         +|..|+++- +  ....+.  ..|+.-+-.+-.      .+    
T Consensus       818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf  897 (2799)
T KOG1788|consen  818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF  897 (2799)
T ss_pred             hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence            3455554332             222         222222220 0  001111  122322222211      12    


Q ss_pred             -hhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhh---cCCHHHHHHHHHHH
Q 005598          600 -DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ---SGTPRAKEKAQALL  675 (689)
Q Consensus       600 -e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~---~~~~~vr~~A~~lL  675 (689)
                       ..++.+...|++..|+..+....++.+..-...|-.+++.++.+.......|.+..|++++.   +|+...--.|..++
T Consensus       898 npdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIv  977 (2799)
T KOG1788|consen  898 NPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIV  977 (2799)
T ss_pred             CchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHH
Confidence             23567778899999999999899999999999999999999988888888999999998864   56656666677777


Q ss_pred             HHhhcCcCC
Q 005598          676 SYFRNQRHG  684 (689)
Q Consensus       676 ~~L~~~~~~  684 (689)
                      .+|..++-.
T Consensus       978 emLgayrls  986 (2799)
T KOG1788|consen  978 EMLGAYRLS  986 (2799)
T ss_pred             HHHhhccCC
Confidence            777666543

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=93.05  E-value=9.1  Score=39.71  Aligned_cols=60  Identities=20%  Similarity=0.210  Sum_probs=46.6

Q ss_pred             cHHHHHHHhcc--CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598          610 GIPVLVEVVEL--GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       610 ~v~~Lv~lL~s--~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~  680 (689)
                      .|+.|.+.|..  ..+.++..|+.+|..++..           ..++.|.+++....+-+++.+.-.|.++.-
T Consensus       219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e~~~D~~~vv~esc~valdm~ey  280 (289)
T KOG0567|consen  219 AIPSLIKVLLDETEHPMVRHEAAEALGAIADE-----------DCVEVLKEYLGDEERVVRESCEVALDMLEY  280 (289)
T ss_pred             hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------HHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence            58888888864  5789999999999987742           346677788888888888888888777653

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.97  E-value=1.6  Score=49.22  Aligned_cols=153  Identities=19%  Similarity=0.148  Sum_probs=112.1

Q ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCH----HHHHHHHHHHHhhhhchHHHH
Q 005598          488 AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTP----RGKKDAATALFNLSIYHENKA  563 (689)
Q Consensus       488 ~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~----~v~~~Al~aL~nLs~~~~n~~  563 (689)
                      ....+.+++.+++...+..|...|.+++.+......+....++..|..++.++..    .....++.++..|-...-..+
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            3455677888898888888999999999998888888888899999999998743    455555666555544333333


Q ss_pred             HHHHhCcHHHHHHhc---CCChHHHHHHHHHHHHHhCCch-hHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhC
Q 005598          564 RIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPD-GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN  639 (689)
Q Consensus       564 ~lv~~G~v~~Lv~LL---~~~~~v~e~Al~~L~nLa~~~e-~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~  639 (689)
                      ..+....|.....+.   ..+..+...|+..|.++..+.. -++.+.++--+..|+..|+..+..++..|...|-.+...
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~  243 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK  243 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence            344444454554444   2344567789999999988666 466667777799999999999999999888888777655


Q ss_pred             C
Q 005598          640 S  640 (689)
Q Consensus       640 ~  640 (689)
                      .
T Consensus       244 a  244 (713)
T KOG2999|consen  244 A  244 (713)
T ss_pred             C
Confidence            4

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=92.92  E-value=2.9  Score=44.52  Aligned_cols=168  Identities=16%  Similarity=0.199  Sum_probs=109.6

Q ss_pred             CcHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhH--H
Q 005598          446 GAINILV-DMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK--I  522 (689)
Q Consensus       446 g~I~~Lv-~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k--~  522 (689)
                      +.+..|+ ..+++.++.+++.|+.+|+-.+.-+..    .....++.+...++.++..++..|+.+|+.+.......  .
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~----~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~  101 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE----LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD  101 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence            3444443 677888999999999999988754331    11234677888887788999999999999886522111  1


Q ss_pred             -------HHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHh-cCC---ChHHHHHHH-H
Q 005598          523 -------KIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDL-MDP---AAGMVDKAV-A  590 (689)
Q Consensus       523 -------~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~L-L~~---~~~v~e~Al-~  590 (689)
                             .......++.+.+.|.+.++.++..|+..++.|...+....   ...++..|+-+ +++   +..-...++ .
T Consensus       102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~  178 (298)
T PF12719_consen  102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV  178 (298)
T ss_pred             chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence                   12223677888888888899999999999998876543322   13344444443 232   222233444 4


Q ss_pred             HHHHHhCCchhHHHHHhcCcHHHHHHHhcc
Q 005598          591 VLANLATIPDGRVAIGQENGIPVLVEVVEL  620 (689)
Q Consensus       591 ~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s  620 (689)
                      .+-..|......+..+...+++.+..+...
T Consensus       179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  179 FFPVYASSSPENQERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence            455566666656667777778888777754

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.86  E-value=4.9  Score=49.24  Aligned_cols=218  Identities=18%  Similarity=0.224  Sum_probs=125.3

Q ss_pred             CCCHHHHHHHHHHHHHhhccCcccHHHHHhc--CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--CccHHHHHHcCCHH
Q 005598          415 STSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLHSSETKIQENAVTALLNLSIN--DNNKSAIANANAIE  490 (689)
Q Consensus       415 s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~--g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~--~~~k~~i~~~g~l~  490 (689)
                      +.+..+|..+-+.|..+... +.......+.  .....|..-+++.....+...+.+|..|-..  .+....+.  ..|+
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~  741 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIP  741 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHH
Confidence            44778899999999888775 3333333221  3344455555555666677777777666422  12222222  2345


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhccc----CchhHHHHHhhCChHHHHHhhcCC--CHHHHHHH--HHHHHhhhhchHHH
Q 005598          491 PLIHVLQTGSPEARENAAATLFSLSV----IEDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDA--ATALFNLSIYHENK  562 (689)
Q Consensus       491 ~Lv~lL~s~~~~~~~~Aa~aL~nLs~----~~~~k~~I~~~g~I~~Lv~LL~~~--~~~v~~~A--l~aL~nLs~~~~n~  562 (689)
                      -++-.++.-+...+.+|..+|..|..    .+.....  ....|...+..+..+  .......+  +.++..+..   ..
T Consensus       742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~---e~  816 (1176)
T KOG1248|consen  742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ---EF  816 (1176)
T ss_pred             HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH---HH
Confidence            55555577788899999999988862    1111000  112455555555544  22222222  334444332   22


Q ss_pred             HHHHHhCcHHHHHHh----c-CCChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005598          563 ARIVQAGAVKHLVDL----M-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL  636 (689)
Q Consensus       563 ~~lv~~G~v~~Lv~L----L-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L  636 (689)
                      ..+.+.+.++.+++.    | .....++..|++.+..++. .++..-.--....++.++.+++.....++...-..|-.|
T Consensus       817 ~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL  896 (1176)
T KOG1248|consen  817 KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL  896 (1176)
T ss_pred             hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            334445555555554    3 5778899999999999887 444433333344678888887777777777766677666


Q ss_pred             hhCC
Q 005598          637 CTNS  640 (689)
Q Consensus       637 ~~~~  640 (689)
                      ++..
T Consensus       897 irkf  900 (1176)
T KOG1248|consen  897 IRKF  900 (1176)
T ss_pred             HHHh
Confidence            6643

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=92.80  E-value=2.1  Score=50.83  Aligned_cols=217  Identities=15%  Similarity=0.105  Sum_probs=139.1

Q ss_pred             CCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHhcccCchhHHHHH--hhCChHH
Q 005598          457 SSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIG--RSGAIGP  532 (689)
Q Consensus       457 s~~~~v~~~Al~aL~nLs~~-~~~k~~i~~~g~l~~Lv~lL~-s~~~~~~~~Aa~aL~nLs~~~~~k~~I~--~~g~I~~  532 (689)
                      +..+.+.-.+.+++...+.. ..+...+-  -.+...+..+. +..+.++..|+++++..+.    ...+.  ..+++..
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~----~~vl~~~~p~ild~  534 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK----VKVLLSLQPMILDG  534 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC----ceeccccchHHHHH
Confidence            34455555777777655422 11211111  12233333333 3345677788887777662    11111  2378888


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc---CCChHHHHHHHHHHHHHhCCchhHHHHHhcC
Q 005598          533 LVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVAIGQEN  609 (689)
Q Consensus       533 Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL---~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g  609 (689)
                      |+++....+.++......+|...+..+.-.....++-+.|.++.++   .+++-++..+-.++..|+....+..- ....
T Consensus       535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~-m~e~  613 (1005)
T KOG2274|consen  535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP-MQER  613 (1005)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc-hHHH
Confidence            9999888888888888889999988887777778888889888876   45555666777777766652222211 1234


Q ss_pred             cHHHHHHHhccCC----HHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHh-hhcCCHHHHHHHHHHHHHhhc
Q 005598          610 GIPVLVEVVELGS----ARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL-SQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       610 ~v~~Lv~lL~s~s----~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~L-L~~~~~~vr~~A~~lL~~L~~  680 (689)
                      .+|.|+..|....    .....-|+.+|..+.++.+.-....+-.-++|.+.++ +.+++..+-..|.++|+.+-.
T Consensus       614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is  689 (1005)
T KOG2274|consen  614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS  689 (1005)
T ss_pred             HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence            6899999997654    5667778888888888765322222233467777776 556667888999999998754

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.58  E-value=0.037  Score=42.42  Aligned_cols=45  Identities=20%  Similarity=0.194  Sum_probs=37.8

Q ss_pred             cccccccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCCcC
Q 005598          101 FCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTL  145 (689)
Q Consensus       101 f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~l~~~~~~cP~t~~~l  145 (689)
                      -.|-||.+-..|-|+--|||- .|-.|=.+-|...+..||.||.|+
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi   53 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI   53 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence            359999998888888899997 788887777776778899999875

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=92.32  E-value=3.9  Score=45.14  Aligned_cols=96  Identities=9%  Similarity=0.232  Sum_probs=77.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhc-C---CCHHHHHHHHHHHHHhhcCCccH
Q 005598          405 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-S---SETKIQENAVTALLNLSINDNNK  480 (689)
Q Consensus       405 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~-s---~~~~v~~~Al~aL~nLs~~~~~k  480 (689)
                      .+..+++.-..--+.+-..|+..+..+....|..-..+.+.|.++.++..+. .   ...++....-.+|..||.+....
T Consensus       110 sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl  189 (379)
T PF06025_consen  110 SLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGL  189 (379)
T ss_pred             HHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHH
Confidence            3344444444444567788999999999988989999999999999999887 4   35677777778888899999999


Q ss_pred             HHHHHcCCHHHHHHHHcCCC
Q 005598          481 SAIANANAIEPLIHVLQTGS  500 (689)
Q Consensus       481 ~~i~~~g~l~~Lv~lL~s~~  500 (689)
                      +.+.+.+.++.+++++.+..
T Consensus       190 ~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  190 EKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             HHHHhcChHHHHHHHhCCHH
Confidence            99999999999999987653

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.16  E-value=0.3  Score=44.50  Aligned_cols=70  Identities=10%  Similarity=0.107  Sum_probs=59.1

Q ss_pred             cHHHHHHHhc-cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 005598          610 GIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR  679 (689)
Q Consensus       610 ~v~~Lv~lL~-s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~  679 (689)
                      .+..|+++|. +.++.+...|+.=|..+++..|..+..+-+.|+-..++.||.+.++.+|..|..++..|-
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            5789999994 457788888999999999999988888888999999999999999999999999877653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=91.89  E-value=0.11  Score=55.43  Aligned_cols=53  Identities=26%  Similarity=0.370  Sum_probs=48.2

Q ss_pred             ccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCcc
Q 005598          100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN  153 (689)
Q Consensus       100 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn  153 (689)
                      ...|.+++..|.|||-+..|..||-..|--||+.. .+-|.||+++..++|++-
T Consensus        40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~-g~nP~tG~kl~~~dLIkL   92 (518)
T KOG0883|consen   40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKH-GTNPITGQKLDGKDLIKL   92 (518)
T ss_pred             hhhceeccccccCcccccCCcEEeeehhhHHHHHc-CCCCCCCCccccccceee
Confidence            46899999999999999999999999999999975 568999999999998873

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=91.87  E-value=2.2  Score=41.61  Aligned_cols=76  Identities=13%  Similarity=0.267  Sum_probs=62.4

Q ss_pred             HHHHHHhCcHHHHHHhcC----------CChHHHHHHHHHHHHHhCCchhHHHHHh-cCcHHHHHHHhccCCHHHHHHHH
Q 005598          562 KARIVQAGAVKHLVDLMD----------PAAGMVDKAVAVLANLATIPDGRVAIGQ-ENGIPVLVEVVELGSARGKENAA  630 (689)
Q Consensus       562 ~~~lv~~G~v~~Lv~LL~----------~~~~v~e~Al~~L~nLa~~~e~r~~i~~-~g~v~~Lv~lL~s~s~~~~e~Av  630 (689)
                      ...|++.||+..|+++|.          .+......++.+|..|..+..|...++. .+++..|+..|.+.+..++..|+
T Consensus       100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l  179 (187)
T PF06371_consen  100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL  179 (187)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred             HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence            457889999999999871          2235667899999999999999988886 56799999999999999999999


Q ss_pred             HHHHHHh
Q 005598          631 AALLQLC  637 (689)
Q Consensus       631 ~aL~~L~  637 (689)
                      .+|..+|
T Consensus       180 eiL~~lc  186 (187)
T PF06371_consen  180 EILAALC  186 (187)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999988

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.61  E-value=26  Score=41.50  Aligned_cols=249  Identities=13%  Similarity=0.113  Sum_probs=129.4

Q ss_pred             HHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHH
Q 005598          411 EDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIE  490 (689)
Q Consensus       411 ~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~  490 (689)
                      +...+..+.++..|+.+|-+|-.-+++.+..+     +..+-.||....+.|.-.|+.+...+|-+  .-+.|  .+...
T Consensus       150 ~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPe--rldLI--Hknyr  220 (968)
T KOG1060|consen  150 KAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPE--RLDLI--HKNYR  220 (968)
T ss_pred             HHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchh--HHHHh--hHHHH
Confidence            33446788889999999988877776665544     44555677777788888888888777632  11111  12233


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhccc----Cc--------h-------------hHHHHHhhC----ChHHHHHhhcCCC
Q 005598          491 PLIHVLQTGSPEARENAAATLFSLSV----IE--------D-------------NKIKIGRSG----AIGPLVDLLGNGT  541 (689)
Q Consensus       491 ~Lv~lL~s~~~~~~~~Aa~aL~nLs~----~~--------~-------------~k~~I~~~g----~I~~Lv~LL~~~~  541 (689)
                      .|+.+|.+=+.=-+......|..-+.    .+        +             .+..+...-    .+...-.||.+.+
T Consensus       221 klC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n  300 (968)
T KOG1060|consen  221 KLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRN  300 (968)
T ss_pred             HHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCC
Confidence            34444432111111122222211111    00        0             000011111    1222333456778


Q ss_pred             HHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhC------------------Cchh--
Q 005598          542 PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLAT------------------IPDG--  601 (689)
Q Consensus       542 ~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L~nLa~------------------~~e~--  601 (689)
                      +.+..+++.+.+.|+-..++      ..++..|+.+|.+...++.-.+..++.++.                  .+..  
T Consensus       301 ~sVVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk  374 (968)
T KOG1060|consen  301 PSVVMAVAQLFYHLAPKNQV------TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVK  374 (968)
T ss_pred             cHHHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHH
Confidence            89999999999998764322      224667777774443333333333332221                  1110  


Q ss_pred             --H----HHHHhcCcHHHH----HHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHH
Q 005598          602 --R----VAIGQENGIPVL----VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKA  671 (689)
Q Consensus       602 --r----~~i~~~g~v~~L----v~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A  671 (689)
                        +    ..++.+.-+..+    ...+.+.+......|+.+|..++.....     +...++..|+.++.+.+..+.-.|
T Consensus       375 ~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~ea  449 (968)
T KOG1060|consen  375 ILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEA  449 (968)
T ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHH
Confidence              0    111223333333    3334455555666777777776654332     234567778888888877666666


Q ss_pred             HHHHHHhh
Q 005598          672 QALLSYFR  679 (689)
Q Consensus       672 ~~lL~~L~  679 (689)
                      ...++.|-
T Consensus       450 V~vIk~Ll  457 (968)
T KOG1060|consen  450 VVVIKRLL  457 (968)
T ss_pred             HHHHHHHH
Confidence            66555554

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.60  E-value=0.042  Score=55.84  Aligned_cols=55  Identities=18%  Similarity=0.421  Sum_probs=43.5

Q ss_pred             CccccccccccccCce----------ecCCCccccHHHHHHHHhcC-CCCCCCCCCcCCCCCCCcc
Q 005598           99 SDFCCPLSLELMTDPV----------IVASGQTYERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPN  153 (689)
Q Consensus        99 ~~f~CpI~~~lm~dPV----------~~~~G~ty~r~~I~~~l~~~-~~~cP~t~~~l~~~~l~pn  153 (689)
                      ++=.|.||++-+.+-|          .++|+|+|--.||.-|..-| ..+||.|++.+..+.+..|
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn  288 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN  288 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence            3568999998776666          58999999999999997654 4689999988766555544

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=91.59  E-value=0.047  Score=62.67  Aligned_cols=47  Identities=17%  Similarity=0.389  Sum_probs=40.0

Q ss_pred             ccccccccccccCcee---cCCCccccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005598          100 DFCCPLSLELMTDPVI---VASGQTYERAFIKKWIDLGLFVCPKTRQTLAH  147 (689)
Q Consensus       100 ~f~CpI~~~lm~dPV~---~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~  147 (689)
                      .-.||+|..-+.|-.+   .+|||-||.+||..|-... .+||+|+..+..
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-qTCPiDR~EF~~  172 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-QTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-ccCchhhhhhhe
Confidence            4579999999999876   4799999999999998864 789999987754

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=91.47  E-value=5.7  Score=48.78  Aligned_cols=228  Identities=15%  Similarity=0.161  Sum_probs=130.2

Q ss_pred             chhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---c-CcccHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHhhc
Q 005598          401 GIETQVRKLVEDLKSTSLDTQREATAELRLLAK---H-NMDNRMVIANCGAINILVDMLHSSE-TKIQENAVTALLNLSI  475 (689)
Q Consensus       401 ~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~---~-s~~nr~~i~~~g~I~~Lv~lL~s~~-~~v~~~Al~aL~nLs~  475 (689)
                      ..+-.++.++.++.++...+|..|+..|..+..   . .+.+-..+.+ =.+|.|-.++...+ ..++..-+..|..|+.
T Consensus       459 ~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e-YlfP~L~~l~~d~~~~~vRiayAsnla~LA~  537 (1431)
T KOG1240|consen  459 KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPE-YLFPHLNHLLNDSSAQIVRIAYASNLAQLAK  537 (1431)
T ss_pred             HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHh-hhhhhhHhhhccCccceehhhHHhhHHHHHH
Confidence            345678999999999999999999988776532   1 2222223332 34566666665522 2223222222333321


Q ss_pred             ------------------C-CccHHHHHH-----c----CCHH-HHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHh
Q 005598          476 ------------------N-DNNKSAIAN-----A----NAIE-PLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR  526 (689)
Q Consensus       476 ------------------~-~~~k~~i~~-----~----g~l~-~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~  526 (689)
                                        + +++......     .    ..+. ....+|....+-++..-+..|.-|+.      -++.
T Consensus       538 tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~------FFGk  611 (1431)
T KOG1240|consen  538 TAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCV------FFGK  611 (1431)
T ss_pred             HHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH------Hhhh
Confidence                              1 111000000     0    1122 22334444445555555555554432      2222


Q ss_pred             h----CChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchh
Q 005598          527 S----GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG  601 (689)
Q Consensus       527 ~----g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~  601 (689)
                      .    -.++.|+.+|.+.+...+-+=...|..++..-.-  +-++...+|.|.+-| +.+..++..|+++|..|+...--
T Consensus       612 ~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll  689 (1431)
T KOG1240|consen  612 EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLL  689 (1431)
T ss_pred             cccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhccc
Confidence            1    3567788888888776666544455544443222  225678888888888 77888999999999999874432


Q ss_pred             H-HHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhC
Q 005598          602 R-VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN  639 (689)
Q Consensus       602 r-~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~  639 (689)
                      + .++.  ..++...-+|-..+.-++..++.+|..+...
T Consensus       690 ~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~  726 (1431)
T KOG1240|consen  690 RKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ  726 (1431)
T ss_pred             chHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence            2 2221  2344455566778999999999999887654

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=91.36  E-value=0.045  Score=64.23  Aligned_cols=48  Identities=21%  Similarity=0.365  Sum_probs=40.9

Q ss_pred             cccccccccccCceecCCCccccHHHHHHHHhcCC-CCCCCCCCcCCCCC
Q 005598          101 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGL-FVCPKTRQTLAHTT  149 (689)
Q Consensus       101 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~-~~cP~t~~~l~~~~  149 (689)
                      +.|+||.+ ..+||++.|||.||+.|+...+.... ..||.|+..+....
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~  503 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK  503 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence            89999999 88999999999999999999987543 35999987766543

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=91.25  E-value=3.2  Score=43.22  Aligned_cols=183  Identities=17%  Similarity=0.181  Sum_probs=113.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcC--CHHHHHHHHcC----CCHHHHHHHHHHHHhcccCchhH
Q 005598          448 INILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANAN--AIEPLIHVLQT----GSPEARENAAATLFSLSVIEDNK  521 (689)
Q Consensus       448 I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g--~l~~Lv~lL~s----~~~~~~~~Aa~aL~nLs~~~~~k  521 (689)
                      +..+..++.+...+-+.-++-++.-+..++..-..+...+  ....+..++..    ..+..+..+++++.|+-.....+
T Consensus        65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~  144 (268)
T PF08324_consen   65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR  144 (268)
T ss_dssp             HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred             HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence            4445555555444445666777766666665555554432  23444444433    45778889999999999888888


Q ss_pred             HHHHhh-C-ChHHHHHhhcCC----CHHHHHHHHHHHHhhhhchH-HH-HHHHHhCcHHHHHHhc---CCChHHHHHHHH
Q 005598          522 IKIGRS-G-AIGPLVDLLGNG----TPRGKKDAATALFNLSIYHE-NK-ARIVQAGAVKHLVDLM---DPAAGMVDKAVA  590 (689)
Q Consensus       522 ~~I~~~-g-~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~~~~-n~-~~lv~~G~v~~Lv~LL---~~~~~v~e~Al~  590 (689)
                      ..+... + .+-.++..+...    +..++..++.+++|++..-. .+ ..-.....+..+++.+   ..+.+..-+++-
T Consensus       145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv  224 (268)
T PF08324_consen  145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV  224 (268)
T ss_dssp             HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred             HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence            877665 4 455555555544    67888899999999987322 11 1112233556666644   257888899999


Q ss_pred             HHHHHhCCchhHHHHHhc-CcHHHHHHHh-ccCCHHHHHHHH
Q 005598          591 VLANLATIPDGRVAIGQE-NGIPVLVEVV-ELGSARGKENAA  630 (689)
Q Consensus       591 ~L~nLa~~~e~r~~i~~~-g~v~~Lv~lL-~s~s~~~~e~Av  630 (689)
                      +|++|...+......... ++-..+...- ....+++++.+.
T Consensus       225 AlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~  266 (268)
T PF08324_consen  225 ALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA  266 (268)
T ss_dssp             HHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence            999999877666666553 3333333333 345667666554

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.21  E-value=9.1  Score=44.94  Aligned_cols=133  Identities=18%  Similarity=0.256  Sum_probs=75.2

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhc-----------CCCHHHHHHHHHHHHhhhh-c
Q 005598          491 PLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG-----------NGTPRGKKDAATALFNLSI-Y  558 (689)
Q Consensus       491 ~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~-----------~~~~~v~~~Al~aL~nLs~-~  558 (689)
                      -++++|.+++.+++..+......|+.          ..-+..++.+|+           +.+...+..-+.+|...+. .
T Consensus       321 DvLrvLss~dldvr~Ktldi~ldLvs----------srNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~F  390 (948)
T KOG1058|consen  321 DVLRVLSSPDLDVRSKTLDIALDLVS----------SRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKF  390 (948)
T ss_pred             HHHHHcCcccccHHHHHHHHHHhhhh----------hccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcC
Confidence            34455666666666666666665543          233455555554           1134456666667776665 2


Q ss_pred             hHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhcc-CCHHHHHHHHHHHHH
Q 005598          559 HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQ  635 (689)
Q Consensus       559 ~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s-~s~~~~e~Av~aL~~  635 (689)
                      ++     +.+.+|+.|++++ +.+.......+..+..... .+.-|.     ..+..|++-+.. .+.++-+.|+|++..
T Consensus       391 p~-----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~-----~ii~~l~~~~~~irS~ki~rgalwi~Ge  460 (948)
T KOG1058|consen  391 PE-----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRA-----SIIEKLLETFPQIRSSKICRGALWILGE  460 (948)
T ss_pred             hH-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHH-----HHHHHHHHhhhhhcccccchhHHHHHHH
Confidence            33     5577899999999 4443333333333332221 222232     234555555533 467788889999988


Q ss_pred             HhhCCHhh
Q 005598          636 LCTNSSRF  643 (689)
Q Consensus       636 L~~~~~~~  643 (689)
                      -|....+.
T Consensus       461 Yce~~~~i  468 (948)
T KOG1058|consen  461 YCEGLSEI  468 (948)
T ss_pred             HHhhhHHH
Confidence            88776543

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=91.12  E-value=0.25  Score=37.74  Aligned_cols=41  Identities=15%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             ccccccc--cccCceecCCC-----ccccHHHHHHHHhcC-CCCCCCCC
Q 005598          102 CCPLSLE--LMTDPVIVASG-----QTYERAFIKKWIDLG-LFVCPKTR  142 (689)
Q Consensus       102 ~CpI~~~--lm~dPV~~~~G-----~ty~r~~I~~~l~~~-~~~cP~t~  142 (689)
                      .|-||++  --.+|.+.||.     +-+=+.|+.+|+... ..+||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            3778875  55778888875     668899999999765 45699985

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.07  E-value=6.6  Score=46.67  Aligned_cols=215  Identities=14%  Similarity=0.135  Sum_probs=127.8

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChH
Q 005598          452 VDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIG  531 (689)
Q Consensus       452 v~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~  531 (689)
                      +..+..+-+.++-.++..|..+....+.+..+...+.+...+..|++.+.-+-.+|...+..|+..       .....++
T Consensus       733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~  805 (982)
T KOG4653|consen  733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILP  805 (982)
T ss_pred             HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHH
Confidence            334444556678888888888876666666777788999999999999888888888877777642       2345666


Q ss_pred             HHHH-hhcCC---CHHHHHHHHHHHHhhhhc-hHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhH-HH
Q 005598          532 PLVD-LLGNG---TPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR-VA  604 (689)
Q Consensus       532 ~Lv~-LL~~~---~~~v~~~Al~aL~nLs~~-~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r-~~  604 (689)
                      -|.+ +....   .++.+...-.++.++... .+...... +-.+...+..+ +++...+..+++.|++||.--..+ ..
T Consensus       806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd  884 (982)
T KOG4653|consen  806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD  884 (982)
T ss_pred             HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence            6666 33322   133444444666665542 22222222 24445555555 455566778899999988733221 11


Q ss_pred             HHhcCcHHHHHHHhc-cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhC---CChHHHHHhhhcCC-HHHHHHHHHHH
Q 005598          605 IGQENGIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQE---GAVPPLVALSQSGT-PRAKEKAQALL  675 (689)
Q Consensus       605 i~~~g~v~~Lv~lL~-s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~---g~i~~L~~LL~~~~-~~vr~~A~~lL  675 (689)
                      . =..++..++.+.+ .++..+++.|+-+|..+-.+.....-.+.++   .....+..+..... +.++-.|..+|
T Consensus       885 ~-~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l  959 (982)
T KOG4653|consen  885 F-FHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL  959 (982)
T ss_pred             H-HHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            1 1123445555554 4688899999999988877655333333322   23344444544443 44554544433

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=91.04  E-value=0.17  Score=38.29  Aligned_cols=43  Identities=26%  Similarity=0.320  Sum_probs=22.2

Q ss_pred             cccccccc--cCceec--CCCccccHHHHHHHHhcCCCCCCCCCCcC
Q 005598          103 CPLSLELM--TDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTL  145 (689)
Q Consensus       103 CpI~~~lm--~dPV~~--~~G~ty~r~~I~~~l~~~~~~cP~t~~~l  145 (689)
                      ||+|.+.|  +|=-..  +||+-+||.|..+-...++..||-||+++
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            78888887  221223  58999999998888876667799999875

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.98  E-value=0.13  Score=54.86  Aligned_cols=50  Identities=16%  Similarity=0.384  Sum_probs=37.7

Q ss_pred             CCccccccccccccCcee-----c-CCCccccHHHHHHHHhcCCC--CCCCCCCcCCCCC
Q 005598           98 PSDFCCPLSLELMTDPVI-----V-ASGQTYERAFIKKWIDLGLF--VCPKTRQTLAHTT  149 (689)
Q Consensus        98 p~~f~CpI~~~lm~dPV~-----~-~~G~ty~r~~I~~~l~~~~~--~cP~t~~~l~~~~  149 (689)
                      |-.-.|.||-+.+  |+.     + .|||+|.-.|+.+||...+.  +||.|+-.+....
T Consensus         2 pi~A~C~Ic~d~~--p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~   59 (465)
T KOG0827|consen    2 PIMAECHICIDGR--PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERH   59 (465)
T ss_pred             CccceeeEeccCC--ccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccccee
Confidence            4456799996655  443     3 49999999999999997655  6999985555443

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=90.74  E-value=0.18  Score=52.23  Aligned_cols=47  Identities=19%  Similarity=0.415  Sum_probs=38.4

Q ss_pred             cccccc-ccccCcee----cCCCccccHHHHHHHHhcCCCCCCCCCCcCCCC
Q 005598          102 CCPLSL-ELMTDPVI----VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT  148 (689)
Q Consensus       102 ~CpI~~-~lm~dPV~----~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~  148 (689)
                      .||+|. +....|-+    -+|||+.|-+|.-+-+..|...||.|+..|...
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~   53 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN   53 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence            388887 55566643    289999999999999999988899999987653

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=90.66  E-value=36  Score=41.18  Aligned_cols=230  Identities=19%  Similarity=0.234  Sum_probs=125.1

Q ss_pred             hHHHHHHHHhcC-----CCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhc----CCC----HHHHHHHHHHH
Q 005598          404 TQVRKLVEDLKS-----TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH----SSE----TKIQENAVTAL  470 (689)
Q Consensus       404 ~~V~~Lv~~L~s-----~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~----s~~----~~v~~~Al~aL  470 (689)
                      +.+..|+..|.+     +..+.....+..|...++ -..||..+.+.|+++.|+..|.    ...    ..+.+..+.++
T Consensus       117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii  195 (802)
T PF13764_consen  117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII  195 (802)
T ss_pred             CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence            455666666653     222333344555555566 4789999999999999998774    333    56677777776


Q ss_pred             HHhhcCCccHHH-----HHH--------cCCHHHHHHHHcCC----CHHHHHHHHHHHHhcccCchhHH-HHHhhCChHH
Q 005598          471 LNLSINDNNKSA-----IAN--------ANAIEPLIHVLQTG----SPEARENAAATLFSLSVIEDNKI-KIGRSGAIGP  532 (689)
Q Consensus       471 ~nLs~~~~~k~~-----i~~--------~g~l~~Lv~lL~s~----~~~~~~~Aa~aL~nLs~~~~~k~-~I~~~g~I~~  532 (689)
                      ..|.........     ...        ...+..|+..+.+.    +..+....+++|-.|+..+..+. .+++.  +.+
T Consensus       196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p  273 (802)
T PF13764_consen  196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKP  273 (802)
T ss_pred             HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHH
Confidence            666422111000     001        12366666666643    57788889999999987544332 22221  122


Q ss_pred             HHHhhc--CC-CHHHHHHHHHHHHhhhh----c---hHHHHHHHHhCcHHHHHHhc-C--C------Ch--------HHH
Q 005598          533 LVDLLG--NG-TPRGKKDAATALFNLSI----Y---HENKARIVQAGAVKHLVDLM-D--P------AA--------GMV  585 (689)
Q Consensus       533 Lv~LL~--~~-~~~v~~~Al~aL~nLs~----~---~~n~~~lv~~G~v~~Lv~LL-~--~------~~--------~v~  585 (689)
                      .+++=+  .. ...- ...+.+++.++.    +   ..-|..+++.|++...++.| .  +      ..        +..
T Consensus       274 ~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL  352 (802)
T PF13764_consen  274 YLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL  352 (802)
T ss_pred             hcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence            222111  11 1111 122344444433    1   23467889999999888876 1  1      11        123


Q ss_pred             HHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccC--CHHHHHHHHHHHHHHhh
Q 005598          586 DKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG--SARGKENAAAALLQLCT  638 (689)
Q Consensus       586 e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~--s~~~~e~Av~aL~~L~~  638 (689)
                      ..++.+|.-||......+.++..++++ ++..|...  ...+-..|=.+|-.|+.
T Consensus       353 p~iL~lL~GLa~gh~~tQ~~~~~~~l~-~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  353 PYILRLLRGLARGHEPTQLLIAEQLLP-LLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHhhHHH-HHHHhhcCCCccchHHHHHHHHHHHhc
Confidence            457788888888655555556566664 44444332  23333344444444444

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=90.64  E-value=6.4  Score=43.88  Aligned_cols=146  Identities=20%  Similarity=0.146  Sum_probs=98.5

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcccCch----hHHHHHhhCChHHHHHhhcCC-----C-H-HHHHHHHHHHHhhhhch
Q 005598          491 PLIHVLQTGSPEARENAAATLFSLSVIED----NKIKIGRSGAIGPLVDLLGNG-----T-P-RGKKDAATALFNLSIYH  559 (689)
Q Consensus       491 ~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~----~k~~I~~~g~I~~Lv~LL~~~-----~-~-~v~~~Al~aL~nLs~~~  559 (689)
                      .+..+++..+++-+-.|+-.+..+...++    +|..+.+.=+++.+-++|.++     . + -.+..++..|...|..+
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            35566666666667777777777766444    577788886678888888743     1 2 23445677888888877


Q ss_pred             HHHHHHHHhCcHHHHHHhc----CCC----hHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCC-HHHHHHHH
Q 005598          560 ENKARIVQAGAVKHLVDLM----DPA----AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS-ARGKENAA  630 (689)
Q Consensus       560 ~n~~~lv~~G~v~~Lv~LL----~~~----~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s-~~~~e~Av  630 (689)
                      +....----..+|.|++++    +++    ..+++.+-.+|..++..+.|...++..|+++.+.++-...+ ......|.
T Consensus        95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal  174 (698)
T KOG2611|consen   95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALAL  174 (698)
T ss_pred             hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHH
Confidence            7543211234688888888    222    23788999999999999999999999999999987754322 23334444


Q ss_pred             HHHHHH
Q 005598          631 AALLQL  636 (689)
Q Consensus       631 ~aL~~L  636 (689)
                      .++.-+
T Consensus       175 ~Vlll~  180 (698)
T KOG2611|consen  175 KVLLLL  180 (698)
T ss_pred             HHHHHH
Confidence            444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=90.62  E-value=19  Score=43.01  Aligned_cols=170  Identities=12%  Similarity=0.097  Sum_probs=112.6

Q ss_pred             HHHhccc-CchhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhchHHHHHHHHhCcH--HHHHHhc-CCCh-H
Q 005598          510 TLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQAGAV--KHLVDLM-DPAA-G  583 (689)
Q Consensus       510 aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v--~~Lv~LL-~~~~-~  583 (689)
                      +|+++.. .+++...+.+.|++..+...++.. .......+++.+.|++...+.+....-..-+  ..+-.++ ..+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            5666655 566778888999999999999865 5788899999999998866544332211111  1222233 2223 5


Q ss_pred             HHHHHHHHHHHHhCCch------hHH----HHHh--------------cCcHHH-HHHHhc-cCCHHHHHHHHHHHHHHh
Q 005598          584 MVDKAVAVLANLATIPD------GRV----AIGQ--------------ENGIPV-LVEVVE-LGSARGKENAAAALLQLC  637 (689)
Q Consensus       584 v~e~Al~~L~nLa~~~e------~r~----~i~~--------------~g~v~~-Lv~lL~-s~s~~~~e~Av~aL~~L~  637 (689)
                      ..-.|+++|+.+....+      .+.    .+.+              ...+.. +..++. +..+..+..|++++.+++
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~  653 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL  653 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence            56788889988876422      111    1111              111222 444453 457888999999999999


Q ss_pred             hCCHhhHHHHHhCCChHHHHHhhhcC-CHHHHHHHHHHHHHhh
Q 005598          638 TNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFR  679 (689)
Q Consensus       638 ~~~~~~~~~lv~~g~i~~L~~LL~~~-~~~vr~~A~~lL~~L~  679 (689)
                      ...++++..+.+.|+++.+..+-... ...+++.+..++..+.
T Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  696 (699)
T KOG3665|consen  654 EQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE  696 (699)
T ss_pred             HcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence            99998999999999999988875443 3456666666655544

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.56  E-value=3.2  Score=51.97  Aligned_cols=233  Identities=16%  Similarity=0.108  Sum_probs=119.2

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHH-hcCcHHHHHHhhcCCCHHHHHHHHHHHHHh-hc-CCccH
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIA-NCGAINILVDMLHSSETKIQENAVTALLNL-SI-NDNNK  480 (689)
Q Consensus       404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~-~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nL-s~-~~~~k  480 (689)
                      .....|...+.+.+++.+..++..|..+.+.-...+.... ......++..+|..+|+-+|..|..-|+-+ .. +...|
T Consensus       818 ~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k  897 (1702)
T KOG0915|consen  818 IILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK  897 (1702)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH
Confidence            3456677777899999887766655555443222222222 224557788888888877777777666433 11 22223


Q ss_pred             HHHHHcCCHHHHHHHHcCCCHH-------HHHHHHHHHH------hcccCchhHH---HHHhhCChHHHHHhhcCC-CHH
Q 005598          481 SAIANANAIEPLIHVLQTGSPE-------ARENAAATLF------SLSVIEDNKI---KIGRSGAIGPLVDLLGNG-TPR  543 (689)
Q Consensus       481 ~~i~~~g~l~~Lv~lL~s~~~~-------~~~~Aa~aL~------nLs~~~~~k~---~I~~~g~I~~Lv~LL~~~-~~~  543 (689)
                      .     +.+..|+.-|-.|...       ...-.-++|.      +|+.+.+...   .+.+.+.|-..++|-++. ...
T Consensus       898 ~-----~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wn  972 (1702)
T KOG0915|consen  898 K-----SLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWN  972 (1702)
T ss_pred             H-----HHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhh
Confidence            2     2334444444322110       1001111111      1111111000   111223444455555543 233


Q ss_pred             HHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCC
Q 005598          544 GKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS  622 (689)
Q Consensus       544 v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s  622 (689)
                      .++-|+.=+..|+.....+.+-.-...||.|...= |++..+......++..|...+.....-.-..++.-|+.-|.+..
T Consensus       973 Sk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~ke 1052 (1702)
T KOG0915|consen  973 SKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKE 1052 (1702)
T ss_pred             cccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchh
Confidence            33333333333333222222222345667777664 67777766666666666654333222222345666777777889


Q ss_pred             HHHHHHHHHHHHHHhhCCH
Q 005598          623 ARGKENAAAALLQLCTNSS  641 (689)
Q Consensus       623 ~~~~e~Av~aL~~L~~~~~  641 (689)
                      .++++.+|.+|..|..+.+
T Consensus      1053 wRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 1053 WRVREASCLALADLLQGRP 1071 (1702)
T ss_pred             HHHHHHHHHHHHHHHcCCC
Confidence            9999999999999998865

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.34  E-value=0.17  Score=54.51  Aligned_cols=49  Identities=18%  Similarity=0.375  Sum_probs=40.1

Q ss_pred             CCccccccccccccCce-----e---cCCCccccHHHHHHHHhcCC------CCCCCCCCcCC
Q 005598           98 PSDFCCPLSLELMTDPV-----I---VASGQTYERAFIKKWIDLGL------FVCPKTRQTLA  146 (689)
Q Consensus        98 p~~f~CpI~~~lm~dPV-----~---~~~G~ty~r~~I~~~l~~~~------~~cP~t~~~l~  146 (689)
                      -.+..|=||++.-.+++     .   .+|.|+||-.||.+|-....      ..||+||.+..
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            35799999999999998     3   46999999999999975432      45999997754

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=90.11  E-value=2.8  Score=43.48  Aligned_cols=94  Identities=17%  Similarity=0.215  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhh-cCCccHHHHHHcCCHHHHHHHHcC
Q 005598          421 QREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLS-INDNNKSAIANANAIEPLIHVLQT  498 (689)
Q Consensus       421 q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s-~~~~v~~~Al~aL~nLs-~~~~~k~~i~~~g~l~~Lv~lL~s  498 (689)
                      ...|+..|.-++--.+..|..+.+...+..|+.+|.. ..+.++..++.+|..+. .++.|...+-+.+|+..++.++++
T Consensus       108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~  187 (257)
T PF08045_consen  108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS  187 (257)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence            4567788888888889999999999999999999954 56788888888887764 567888888899999999999987


Q ss_pred             C--CHHHHHHHHHHHHhc
Q 005598          499 G--SPEARENAAATLFSL  514 (689)
Q Consensus       499 ~--~~~~~~~Aa~aL~nL  514 (689)
                      .  +.+++...+..|+-.
T Consensus       188 ~~~~~~~r~K~~EFL~fy  205 (257)
T PF08045_consen  188 KSTDRELRLKCIEFLYFY  205 (257)
T ss_pred             ccccHHHhHHHHHHHHHH
Confidence            5  466777777666543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.07  E-value=0.16  Score=55.74  Aligned_cols=51  Identities=16%  Similarity=0.441  Sum_probs=37.8

Q ss_pred             CCCcccccccccccc-----------------CceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005598           97 IPSDFCCPLSLELMT-----------------DPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH  147 (689)
Q Consensus        97 ~p~~f~CpI~~~lm~-----------------dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~  147 (689)
                      +-+.--|+||+.-..                 +=.++||.|.|-|.|+++|.+.-.-.||+||.+|..
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            444567999985321                 123459999999999999998654569999999864

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=90.05  E-value=4.4  Score=45.84  Aligned_cols=152  Identities=16%  Similarity=0.156  Sum_probs=109.4

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhcC-CC----hHHHHHHHHHHHHHhCCchhHH
Q 005598          529 AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD-PA----AGMVDKAVAVLANLATIPDGRV  603 (689)
Q Consensus       529 ~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~-~~----~~v~e~Al~~L~nLa~~~e~r~  603 (689)
                      ....+++++.+++...+..|+.-|..|+........++...++..|..++. .+    ..+....+.++..+-.+.-.-=
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            346678888899888888899999999999999999999999999999983 22    2344455555555443221100


Q ss_pred             HHHhcCcHHHHHHHh--ccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598          604 AIGQENGIPVLVEVV--ELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       604 ~i~~~g~v~~Lv~lL--~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~  680 (689)
                      ......+|..+..+.  +.....+-..|...|-++...+....+.+.++--++.|+..++.++.++...|..+|..+-.
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            011122333333333  22355567788899999988888788888899999999999999999999999888876643

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=89.77  E-value=0.67  Score=44.55  Aligned_cols=143  Identities=18%  Similarity=0.154  Sum_probs=88.2

Q ss_pred             HHHHHHHHcC--CCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc-hHHHH-H
Q 005598          489 IEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKA-R  564 (689)
Q Consensus       489 l~~Lv~lL~s--~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~~n~~-~  564 (689)
                      +..++..|..  ...++|..+.-++..+-  +..+... ..-+-+.+-.++..+..+....+..++..|-.- ++... .
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l   81 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL   81 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence            4455555543  45667777777777662  3333333 222233333444444444666677777766553 33333 3


Q ss_pred             HHHhCcHHHHHHhcC---CChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhc-cCCHH-HHHHHHHHHHH
Q 005598          565 IVQAGAVKHLVDLMD---PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE-LGSAR-GKENAAAALLQ  635 (689)
Q Consensus       565 lv~~G~v~~Lv~LL~---~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~-s~s~~-~~e~Av~aL~~  635 (689)
                      +...|.++.++.++.   .+..+...++.+|..-|.....|..+.+. +++.|-++++ +.++. ++..|+.+|..
T Consensus        82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            446899999999884   44556677888888888877777777655 4588888885 44565 68888777764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=89.70  E-value=6.4  Score=46.83  Aligned_cols=121  Identities=16%  Similarity=0.239  Sum_probs=83.6

Q ss_pred             HHHHHHhCcHHHHHHhc---------CCChHHHHHHHHHHHHHhCCchhHHHHHh--------cCcHHHHHHHhc----c
Q 005598          562 KARIVQAGAVKHLVDLM---------DPAAGMVDKAVAVLANLATIPDGRVAIGQ--------ENGIPVLVEVVE----L  620 (689)
Q Consensus       562 ~~~lv~~G~v~~Lv~LL---------~~~~~v~e~Al~~L~nLa~~~e~r~~i~~--------~g~v~~Lv~lL~----s  620 (689)
                      ...+.+.+++..++++.         .+..+++..|+++|..+...++.+.+++.        ..++..++..-.    -
T Consensus       594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i  673 (1516)
T KOG1832|consen  594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSI  673 (1516)
T ss_pred             HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccc
Confidence            34567788888888875         13457888999999999999999888763        124555544432    1


Q ss_pred             CCHHHHHHHHHHHHHHhhCCHh-----------------------------------hHHHHHhCCChHHHHHhhhcCC-
Q 005598          621 GSARGKENAAAALLQLCTNSSR-----------------------------------FCSMVLQEGAVPPLVALSQSGT-  664 (689)
Q Consensus       621 ~s~~~~e~Av~aL~~L~~~~~~-----------------------------------~~~~lv~~g~i~~L~~LL~~~~-  664 (689)
                      .++..+..|..+|.|+.+..+.                                   ....+...+||..|+.|++... 
T Consensus       674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P  753 (1516)
T KOG1832|consen  674 VDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNP  753 (1516)
T ss_pred             cCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Confidence            4789999999999997654321                                   1122223578999999998764 


Q ss_pred             ----HHHHHHHHHHHHHhhcCc
Q 005598          665 ----PRAKEKAQALLSYFRNQR  682 (689)
Q Consensus       665 ----~~vr~~A~~lL~~L~~~~  682 (689)
                          .-+|.-|..+|--|.++.
T Consensus       754 ~t~aD~IRalAc~~L~GLaR~~  775 (1516)
T KOG1832|consen  754 PTTADCIRALACRVLLGLARDD  775 (1516)
T ss_pred             CCcHHHHHHHHHHHHhccccCc
Confidence                347777777776666554

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=89.55  E-value=2.2  Score=41.72  Aligned_cols=110  Identities=16%  Similarity=0.221  Sum_probs=77.3

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCccc-HHHHHhcCcHHHHHHhhcC---------CCHHHHHHHHHHHHHh
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDN-RMVIANCGAINILVDMLHS---------SETKIQENAVTALLNL  473 (689)
Q Consensus       404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~n-r~~i~~~g~I~~Lv~lL~s---------~~~~v~~~Al~aL~nL  473 (689)
                      .....+++.+++.....  ..+..|...-+..+.. -..|.+.||+..|+.+|..         .+...+..++.+|..|
T Consensus        66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            45677888887665432  4455555444433322 3456678999999998853         3457888899999999


Q ss_pred             hcCCccHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 005598          474 SINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLS  515 (689)
Q Consensus       474 s~~~~~k~~i~~-~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs  515 (689)
                      ..+..+...+.. .+++..|+..|.+.+..++..++.+|..++
T Consensus       144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            887777777776 489999999999999999999999988775

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=89.27  E-value=0.12  Score=42.73  Aligned_cols=48  Identities=17%  Similarity=0.424  Sum_probs=23.8

Q ss_pred             cccccccccccc-C---ceec----CCCccccHHHHHHHHhc--CC--------CCCCCCCCcCCC
Q 005598          100 DFCCPLSLELMT-D---PVIV----ASGQTYERAFIKKWIDL--GL--------FVCPKTRQTLAH  147 (689)
Q Consensus       100 ~f~CpI~~~lm~-d---PV~~----~~G~ty~r~~I~~~l~~--~~--------~~cP~t~~~l~~  147 (689)
                      +..|+||..... +   |+++    .||++|=..|+.+||..  +.        .+||.|+++++-
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            467999998754 2   5553    58999999999999974  11        249999988753

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=89.26  E-value=8.6  Score=46.39  Aligned_cols=187  Identities=16%  Similarity=0.143  Sum_probs=114.8

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCccHHH
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSA  482 (689)
Q Consensus       404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s-~~~~v~~~Al~aL~nLs~~~~~k~~  482 (689)
                      ...+.+-..+.+.++..+.+|+..+........ ........|.+-.++..... .+..+...|+.+|..++..-..-..
T Consensus       253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~  331 (815)
T KOG1820|consen  253 KITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR  331 (815)
T ss_pred             hcChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence            445667777888999999999998888776432 11111112344444444433 4566778888888877632111111


Q ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh-ch-H
Q 005598          483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YH-E  560 (689)
Q Consensus       483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~-~  560 (689)
                      =...+.++.|+.-+......++..+..++-.++.      .......++.+...++++++..+..+..++-.... .. .
T Consensus       332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~  405 (815)
T KOG1820|consen  332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK  405 (815)
T ss_pred             HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence            1223677888888877766666666665554432      01122567778888999999988887776655444 22 2


Q ss_pred             HHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 005598          561 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT  597 (689)
Q Consensus       561 n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~  597 (689)
                      ....-.-.++++.++... +.+.++...|+.+++.+..
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence            222223355677777776 6778888888877776654

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=89.25  E-value=12  Score=36.44  Aligned_cols=92  Identities=21%  Similarity=0.225  Sum_probs=67.3

Q ss_pred             CHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-
Q 005598          500 SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-  578 (689)
Q Consensus       500 ~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-  578 (689)
                      ++.+|.+++.++.-|+....+   + -...++.+...|+++++.+++.|+.+|.+|...+-.+.+   ...+..++.++ 
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~---~-ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~   73 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN---L-VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLV   73 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH---H-HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHc
Confidence            367888999999988753221   1 124578899999999999999999999999765432221   22225555555 


Q ss_pred             CCChHHHHHHHHHHHHHhCC
Q 005598          579 DPAAGMVDKAVAVLANLATI  598 (689)
Q Consensus       579 ~~~~~v~e~Al~~L~nLa~~  598 (689)
                      +++..++..|..++..+...
T Consensus        74 D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   74 DENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             CCCHHHHHHHHHHHHHHHHh
Confidence            88889999999999988774

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=88.41  E-value=29  Score=36.34  Aligned_cols=216  Identities=18%  Similarity=0.151  Sum_probs=123.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCccHHHHHH
Q 005598          408 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSINDNNKSAIAN  485 (689)
Q Consensus       408 ~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s--~~~~v~~~Al~aL~nLs~~~~~k~~i~~  485 (689)
                      .|=..|.+.++..+..|+..|......-+...   ....-+..|+.++.+  .|......++.+|..|.......... .
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~   78 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-A   78 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-H
Confidence            44567888899999999988887655433221   122235556665533  45555555677776665322211100 0


Q ss_pred             cCCHHHHHHHHc--CCCHHHHHHHHHHHHhcccCchhHHHHH--hhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhchH
Q 005598          486 ANAIEPLIHVLQ--TGSPEARENAAATLFSLSVIEDNKIKIG--RSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHE  560 (689)
Q Consensus       486 ~g~l~~Lv~lL~--s~~~~~~~~Aa~aL~nLs~~~~~k~~I~--~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~~  560 (689)
                      ...+..+.+-..  +-....|..+-..|..|...  ....+.  ..+++..+++++..+ +|+....+...+..+...-+
T Consensus        79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence            111222222111  12245677777777776543  223332  236788888888765 88888888877776655322


Q ss_pred             HHHHHHHhCcHHHHHHhc--------CC--Ch--HHH--HHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHH
Q 005598          561 NKARIVQAGAVKHLVDLM--------DP--AA--GMV--DKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGK  626 (689)
Q Consensus       561 n~~~lv~~G~v~~Lv~LL--------~~--~~--~v~--e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~  626 (689)
                           . ...++.+.+.+        .+  +.  .+.  +...++...|+.++.-.     .-++|.|++.|.+.++.++
T Consensus       157 -----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K  225 (262)
T PF14500_consen  157 -----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVK  225 (262)
T ss_pred             -----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHH
Confidence                 1 33444444443        11  11  122  23334444455544322     3368999999999999999


Q ss_pred             HHHHHHHHHHhhCC
Q 005598          627 ENAAAALLQLCTNS  640 (689)
Q Consensus       627 e~Av~aL~~L~~~~  640 (689)
                      .-+..+|..++..-
T Consensus       226 ~D~L~tL~~c~~~y  239 (262)
T PF14500_consen  226 LDSLQTLKACIENY  239 (262)
T ss_pred             HHHHHHHHHHHHHC
Confidence            99999999987654

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.37  E-value=0.25  Score=55.88  Aligned_cols=60  Identities=20%  Similarity=0.348  Sum_probs=40.9

Q ss_pred             Cccccccccccc----cCceecCCCccccHHHHHHHHhcCCCCCCCCC--Cc--CCCCCCCccHHHHHHHH
Q 005598           99 SDFCCPLSLELM----TDPVIVASGQTYERAFIKKWIDLGLFVCPKTR--QT--LAHTTLIPNYTVKALIA  161 (689)
Q Consensus        99 ~~f~CpI~~~lm----~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~--~~--l~~~~l~pn~~l~~~i~  161 (689)
                      +-++|+||..+|    ..||.+-||||.|+.|.+.-...   +||.-+  -.  ...+...-|++|-+.+.
T Consensus        10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp~~~De~~~~~~~~e~p~n~alL~~~~   77 (861)
T KOG3161|consen   10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCPTKRDEDSSLMQLKEEPRNYALLRREH   77 (861)
T ss_pred             HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCCCCccccchhcChhhcchhHHHHHhhc
Confidence            347899997666    47999999999999999987654   477222  11  12234555677766543

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=88.20  E-value=2.9  Score=43.62  Aligned_cols=169  Identities=17%  Similarity=0.119  Sum_probs=98.5

Q ss_pred             HHHHHHHhcccCchhHHHHHhh--CChHHHHHhhcC----CCHHHHHHHHHHHHhhhhchHHHHHHHHhC--cHHHHHHh
Q 005598          506 NAAATLFSLSVIEDNKIKIGRS--GAIGPLVDLLGN----GTPRGKKDAATALFNLSIYHENKARIVQAG--AVKHLVDL  577 (689)
Q Consensus       506 ~Aa~aL~nLs~~~~~k~~I~~~--g~I~~Lv~LL~~----~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G--~v~~Lv~L  577 (689)
                      -+...++-++.++.....+...  +....+..++..    .....+..+++++.|+..+...+..+....  .+-..+..
T Consensus        82 P~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~  161 (268)
T PF08324_consen   82 PALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSS  161 (268)
T ss_dssp             HHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHC
T ss_pred             hHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHH
Confidence            3334444444444433333332  123444444432    367888899999999999888888777633  23333333


Q ss_pred             c-CC----ChHHHHHHHHHHHHHhCCch-hH-HHHHhcCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhhCCHhhHHHHH
Q 005598          578 M-DP----AAGMVDKAVAVLANLATIPD-GR-VAIGQENGIPVLVEVVEL--GSARGKENAAAALLQLCTNSSRFCSMVL  648 (689)
Q Consensus       578 L-~~----~~~v~e~Al~~L~nLa~~~e-~r-~~i~~~g~v~~Lv~lL~s--~s~~~~e~Av~aL~~L~~~~~~~~~~lv  648 (689)
                      + ..    +..+...+..++.|++..-- .+ ..=.....+..+++.+..  .++++...++.+|.+|+..+........
T Consensus       162 ~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~  241 (268)
T PF08324_consen  162 LLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAK  241 (268)
T ss_dssp             CCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCC
T ss_pred             HhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHH
Confidence            3 33    45666777788888865111 01 000011134555553322  6899999999999999977765554444


Q ss_pred             hCCChHHHHHhhhcC-CHHHHHHHHHH
Q 005598          649 QEGAVPPLVALSQSG-TPRAKEKAQAL  674 (689)
Q Consensus       649 ~~g~i~~L~~LL~~~-~~~vr~~A~~l  674 (689)
                      ..|+...+......+ .+++++.+.+|
T Consensus       242 ~l~~~~~~~~~~~~~~e~ri~~v~~ei  268 (268)
T PF08324_consen  242 SLDVKSVLSKKANKSKEPRIKEVAAEI  268 (268)
T ss_dssp             CCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HcChHHHHHHHHhcccchHHHHHhccC
Confidence            456665655555444 58899888765

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=88.16  E-value=36  Score=41.78  Aligned_cols=244  Identities=17%  Similarity=0.153  Sum_probs=131.4

Q ss_pred             hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCc-c
Q 005598          402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDN-N  479 (689)
Q Consensus       402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~-~~~v~~~Al~aL~nLs~~~~-~  479 (689)
                      .+..+..|+..|++.+..++-.|++.+..++...|  +... + .+|...+.++.-. +...-..|+.+|+.|+.--- .
T Consensus       339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~La-d-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl  414 (1133)
T KOG1943|consen  339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELA-D-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL  414 (1133)
T ss_pred             HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHH-H-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence            35788889999999998899999999999999776  2222 2 3555556655432 34455688888888873210 0


Q ss_pred             HHHHHHcCCHHHHHHHHcC--------CCHHHHHHHHHHHHhcccCchhH--HHHHhhCChHHHHHhhcCCCHHHHHHHH
Q 005598          480 KSAIANANAIEPLIHVLQT--------GSPEARENAAATLFSLSVIEDNK--IKIGRSGAIGPLVDLLGNGTPRGKKDAA  549 (689)
Q Consensus       480 k~~i~~~g~l~~Lv~lL~s--------~~~~~~~~Aa~aL~nLs~~~~~k--~~I~~~g~I~~Lv~LL~~~~~~v~~~Al  549 (689)
                      -..+  ...++.+++-|.-        ....+|..|+.++|.++...+..  ..+...=+-..|...+-+....++++|.
T Consensus       415 ps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs  492 (1133)
T KOG1943|consen  415 PSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS  492 (1133)
T ss_pred             hHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence            0001  1345555555532        23568999999999997643322  1121111111223334455677888888


Q ss_pred             HHHHhhhhchHHHHHHHHhCcHHHHHHhcC-CChHHHHHHHHHHHH-HhCCchhHHHHHhcCcHHHHH-HHhccCCHHHH
Q 005598          550 TALFNLSIYHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLAN-LATIPDGRVAIGQENGIPVLV-EVVELGSARGK  626 (689)
Q Consensus       550 ~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~-~~~~v~e~Al~~L~n-La~~~e~r~~i~~~g~v~~Lv-~lL~s~s~~~~  626 (689)
                      .|+.....-..|..     -+++.+. ..+ -.-.....+-..|.. ++..+..++-+     +..|+ +.+..-+..++
T Consensus       493 AAlqE~VGR~~n~p-----~Gi~Lis-~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~-----f~~L~t~Kv~HWd~~ir  561 (1133)
T KOG1943|consen  493 AALQENVGRQGNFP-----HGISLIS-TIDYFSVTNRSNCYLDLCVSIAEFSGYREPV-----FNHLLTKKVCHWDVKIR  561 (1133)
T ss_pred             HHHHHHhccCCCCC-----Cchhhhh-hcchhhhhhhhhHHHHHhHHHHhhhhHHHHH-----HHHHHhcccccccHHHH
Confidence            77765432211110     1111111 110 000011111111111 12222222222     22222 22455689999


Q ss_pred             HHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHH
Q 005598          627 ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPR  666 (689)
Q Consensus       627 e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~  666 (689)
                      +.|+++|..|....++    ....+.+++|+....+.+..
T Consensus       562 elaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~  597 (1133)
T KOG1943|consen  562 ELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDAS  597 (1133)
T ss_pred             HHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChH
Confidence            9999999998876653    33456777777776666543

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=88.01  E-value=17  Score=42.59  Aligned_cols=105  Identities=19%  Similarity=0.176  Sum_probs=76.3

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHH
Q 005598          446 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG  525 (689)
Q Consensus       446 g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~  525 (689)
                      |.+..|++...+++..|+...+.+|..+..........+-.+....|..-|.+..+.+|..|+.+|..+=.++..-    
T Consensus        85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de----  160 (892)
T KOG2025|consen   85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE----  160 (892)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC----
Confidence            6777777888888999999999999888764333444444566677777777888999999999999885322110    


Q ss_pred             hhCChHHHHHhhcCC-CHHHHHHHHHHHHh
Q 005598          526 RSGAIGPLVDLLGNG-TPRGKKDAATALFN  554 (689)
Q Consensus       526 ~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~n  554 (689)
                      +..++..++.+++.+ +++++++|+..|.+
T Consensus       161 e~~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  161 ECPVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence            125677888888865 78999987765543

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=87.70  E-value=31  Score=41.50  Aligned_cols=221  Identities=15%  Similarity=0.114  Sum_probs=132.6

Q ss_pred             CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCccHHHHH--HcCCHHH
Q 005598          415 STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNNKSAIA--NANAIEP  491 (689)
Q Consensus       415 s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~-~~~v~~~Al~aL~nLs~~~~~k~~i~--~~g~l~~  491 (689)
                      +..|.....+...+..++.....+...+.  -++...+..+..+ .+-++..|+.++.-.+.    ...+.  ..+.+..
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~----~~vl~~~~p~ild~  534 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK----VKVLLSLQPMILDG  534 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC----ceeccccchHHHHH
Confidence            34555555666666665554333333322  1233334444332 33455666666655541    11111  1256677


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhc--CCCHHHHHHHHHHHHhhhhchHHHHHHHHhC
Q 005598          492 LIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG--NGTPRGKKDAATALFNLSIYHENKARIVQAG  569 (689)
Q Consensus       492 Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~--~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G  569 (689)
                      |+++....+.++.-..+.+|...+..+.-.....+.-+.|..+.++.  +.++.+...+-.++..|+....+... ....
T Consensus       535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~-m~e~  613 (1005)
T KOG2274|consen  535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP-MQER  613 (1005)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc-hHHH
Confidence            77777777778877778888887765544444445566777777754  34677777777777777764333332 4456


Q ss_pred             cHHHHHHhcC-CC----hHHHHHHHHHHHHHhCCc-hhHHHHHhcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhhCCHh
Q 005598          570 AVKHLVDLMD-PA----AGMVDKAVAVLANLATIP-DGRVAIGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTNSSR  642 (689)
Q Consensus       570 ~v~~Lv~LL~-~~----~~v~e~Al~~L~nLa~~~-e~r~~i~~~g~v~~Lv~lL-~s~s~~~~e~Av~aL~~L~~~~~~  642 (689)
                      .+|.|+..|. +.    ..++.-|+.+|..+.+.. ..-....-.-+.|.+.+.. .+++..+-.+|..+|..+...+.+
T Consensus       614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~e  693 (1005)
T KOG2274|consen  614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLE  693 (1005)
T ss_pred             HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHH
Confidence            8899999983 22    466777888888776633 2222222223456666664 567888889999999998887764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.69  E-value=2.5  Score=49.87  Aligned_cols=39  Identities=18%  Similarity=0.306  Sum_probs=33.4

Q ss_pred             cccccccccccCcee-cCCCccccHHHHHHHHhcCCCCCCCCCC
Q 005598          101 FCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQ  143 (689)
Q Consensus       101 f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~l~~~~~~cP~t~~  143 (689)
                      -.|..|.-.+.=|++ ..|||.|-++|.+    .+...||.|.-
T Consensus       841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~  880 (933)
T KOG2114|consen  841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP  880 (933)
T ss_pred             eeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence            579999999999998 6999999999988    45566999965

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.53  E-value=23  Score=42.32  Aligned_cols=186  Identities=13%  Similarity=0.146  Sum_probs=111.5

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA  482 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~  482 (689)
                      ....++.+..+.+..+.++..++..|+.+.... +....+...+++...+..|...|+-+-.+|+..+..||.-      
T Consensus       726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev------  798 (982)
T KOG4653|consen  726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV------  798 (982)
T ss_pred             HHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh------
Confidence            456778888888888889999999999998854 4555566678999999999999988888888877777632      


Q ss_pred             HHHcCCHHHHHH-HHcCC---CHHHHHHHHHHHHhcccC-chhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598          483 IANANAIEPLIH-VLQTG---SPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI  557 (689)
Q Consensus       483 i~~~g~l~~Lv~-lL~s~---~~~~~~~Aa~aL~nLs~~-~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~  557 (689)
                       .....++.+.. ..+..   ..+.+...-.++.++... .+-.... ..-.+...+..+++++...+..++.++.+||.
T Consensus       799 -y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y-~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq  876 (982)
T KOG4653|consen  799 -YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKY-KAVLINTFLSGVREPDHEFRASSLANLGQLCQ  876 (982)
T ss_pred             -cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHH-HHHHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence             33345666655 33221   123333334444444321 1100000 01234455555666666678888888888877


Q ss_pred             chHHHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhC
Q 005598          558 YHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLAT  597 (689)
Q Consensus       558 ~~~n~~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~  597 (689)
                      -...+..=.=..++..++.+.  +...-++..|+-++..+-.
T Consensus       877 ~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~  918 (982)
T KOG4653|consen  877 LLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN  918 (982)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence            322111111233444444444  3334455666666666554

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=87.51  E-value=32  Score=35.80  Aligned_cols=195  Identities=23%  Similarity=0.227  Sum_probs=116.6

Q ss_pred             hhHHHHHHHHhcC--CCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC---
Q 005598          403 ETQVRKLVEDLKS--TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND---  477 (689)
Q Consensus       403 ~~~V~~Lv~~L~s--~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~---  477 (689)
                      ...|+.|+.-|..  ..+.++..|..+|..+..           .+.++.|-+..+..-..|.+....+|..+-+..   
T Consensus        66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~  134 (289)
T KOG0567|consen   66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID  134 (289)
T ss_pred             chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence            3577888888874  556677788888877652           134555656665555566666556665553211   


Q ss_pred             --ccHHHHH--------HcCCHHHHHHHHcCCC--HHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHH
Q 005598          478 --NNKSAIA--------NANAIEPLIHVLQTGS--PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGK  545 (689)
Q Consensus       478 --~~k~~i~--------~~g~l~~Lv~lL~s~~--~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~  545 (689)
                        .+.....        ...-+..|-..|...+  .--+..|...|.|+-          ...+|..|++-|..++.-.+
T Consensus       135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g----------~EeaI~al~~~l~~~Salfr  204 (289)
T KOG0567|consen  135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG----------TEEAINALIDGLADDSALFR  204 (289)
T ss_pred             cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC----------cHHHHHHHHHhcccchHHHH
Confidence              0000111        1122344443333322  223444444444441          23456677777777777777


Q ss_pred             HHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-C--CChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCC
Q 005598          546 KDAATALFNLSIYHENKARIVQAGAVKHLVDLM-D--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS  622 (689)
Q Consensus       546 ~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~--~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s  622 (689)
                      ..++.++..|          ...-+++.|.+.| +  +..-+...|+.+|+.++.          ..+++.|.+.+...+
T Consensus       205 hEvAfVfGQl----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~  264 (289)
T KOG0567|consen  205 HEVAFVFGQL----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEE  264 (289)
T ss_pred             HHHHHHHhhc----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcH
Confidence            7777777665          3345678888877 2  334455688888888765          346788888888888


Q ss_pred             HHHHHHHHHHHHHHhh
Q 005598          623 ARGKENAAAALLQLCT  638 (689)
Q Consensus       623 ~~~~e~Av~aL~~L~~  638 (689)
                      +-+++.+..+|-.+-.
T Consensus       265 ~vv~esc~valdm~ey  280 (289)
T KOG0567|consen  265 RVVRESCEVALDMLEY  280 (289)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888888888765544

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=87.16  E-value=0.44  Score=50.06  Aligned_cols=50  Identities=20%  Similarity=0.275  Sum_probs=35.5

Q ss_pred             CccccccccccccC--cee--cCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 005598           99 SDFCCPLSLELMTD--PVI--VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT  149 (689)
Q Consensus        99 ~~f~CpI~~~lm~d--PV~--~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~  149 (689)
                      +++ ||+|.+.|.-  --.  -+||+..||.|-..--+.-+..||.||..++.+.
T Consensus        14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den   67 (480)
T COG5175          14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN   67 (480)
T ss_pred             ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence            445 9999998842  222  3689999999865544443456999998887654

>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]

Probab=87.15  E-value=0.48  Score=47.44  Aligned_cols=63  Identities=17%  Similarity=0.298  Sum_probs=46.6

Q ss_pred             cccccccccccCcee-cCCCccccHHHHHHHHhcC-CCCCCC--CCCcCCCCCCCccHHH--HHHHHHH
Q 005598          101 FCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLG-LFVCPK--TRQTLAHTTLIPNYTV--KALIANW  163 (689)
Q Consensus       101 f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~l~~~-~~~cP~--t~~~l~~~~l~pn~~l--~~~i~~~  163 (689)
                      .+|||+.....-|++ ..|.|.|||..|..+++-. ...||.  |-+.+..+.++-.+-|  |..|...
T Consensus       190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~i  258 (275)
T COG5627         190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKREAMKYI  258 (275)
T ss_pred             ccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHHHHHHHH
Confidence            589999999999987 5799999999999999843 234885  6566777777755544  4444433

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=86.75  E-value=44  Score=38.66  Aligned_cols=132  Identities=22%  Similarity=0.311  Sum_probs=80.0

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccHHH
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSA  482 (689)
Q Consensus       404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k~~  482 (689)
                      ..-..++...+ ++...+.-|+..|..+.+.-|....     .+|..++.|...++..|+..|+..|-.+|.+ ++....
T Consensus        23 ~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k   96 (556)
T PF05918_consen   23 EDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK   96 (556)
T ss_dssp             HHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH
T ss_pred             HHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH
Confidence            34455555554 5677888899999999886655433     4688999999999999999999999999865 344444


Q ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhc---CCCHHHHHHHHHHHH
Q 005598          483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG---NGTPRGKKDAATALF  553 (689)
Q Consensus       483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~---~~~~~v~~~Al~aL~  553 (689)
                      +     ...|+++|.+.+..-...+-.+|..|...+       ..+.+..|..-+.   .++..++..++..|.
T Consensus        97 v-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen   97 V-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             H-----HHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            4     457888998776544444444444432110       1245555555554   456667777776664

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.09  E-value=58  Score=39.68  Aligned_cols=216  Identities=14%  Similarity=0.094  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHhhcc---CcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhh-cCCccHHHHHHcCCHHHHHHHH
Q 005598          421 QREATAELRLLAKH---NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS-INDNNKSAIANANAIEPLIHVL  496 (689)
Q Consensus       421 q~~Al~~L~~La~~---s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs-~~~~~k~~i~~~g~l~~Lv~lL  496 (689)
                      ..-|+..+..|+..   ....+..+ +.=.++.+...++++.--++..||+++..++ .+=....  .-..++......|
T Consensus       435 kdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~--~l~~ale~t~~~l  511 (1010)
T KOG1991|consen  435 KDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPN--NLSEALELTHNCL  511 (1010)
T ss_pred             hhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChH--HHHHHHHHHHHHh
Confidence            34566666666521   21222222 2234566667777877889999999999987 3322222  2234566667767


Q ss_pred             c-CCCHHHHHHHHHHHHhcccCch-hHHHHHhh--CChHHHHHhhcCCCHHHHHHHHHHHH-hhhhchHHHHHHHH--hC
Q 005598          497 Q-TGSPEARENAAATLFSLSVIED-NKIKIGRS--GAIGPLVDLLGNGTPRGKKDAATALF-NLSIYHENKARIVQ--AG  569 (689)
Q Consensus       497 ~-s~~~~~~~~Aa~aL~nLs~~~~-~k~~I~~~--g~I~~Lv~LL~~~~~~v~~~Al~aL~-nLs~~~~n~~~lv~--~G  569 (689)
                      . +....++..|+-+|..+..+.. ....+...  +.+..|+.+.+.-..+.....+..+. ..+.  +.....++  ..
T Consensus       512 ~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fse--ElsPfA~eL~q~  589 (1010)
T KOG1991|consen  512 LNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSE--ELSPFAVELCQN  589 (1010)
T ss_pred             ccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH--hhchhHHHHHHH
Confidence            6 6678899999999998866544 33444433  67778888877655444444444332 2111  11111111  22


Q ss_pred             cHHHHHHhcC----CC---hHHHHHHHHHHHHHhC---CchhHHHHH---hcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005598          570 AVKHLVDLMD----PA---AGMVDKAVAVLANLAT---IPDGRVAIG---QENGIPVLVEVVELGSARGKENAAAALLQL  636 (689)
Q Consensus       570 ~v~~Lv~LL~----~~---~~v~e~Al~~L~nLa~---~~e~r~~i~---~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L  636 (689)
                      .....++++.    .+   .+-.-.|.++|..+..   +-+....+.   +..+++.+-.+|++.-.+.-+.+..++..+
T Consensus       590 La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~  669 (1010)
T KOG1991|consen  590 LAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSL  669 (1010)
T ss_pred             HHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence            3344444442    11   2223355566655443   333444343   233567777777777777888888888877


Q ss_pred             hhCCH
Q 005598          637 CTNSS  641 (689)
Q Consensus       637 ~~~~~  641 (689)
                      ....+
T Consensus       670 t~~~~  674 (1010)
T KOG1991|consen  670 TFLSK  674 (1010)
T ss_pred             hhhhc
Confidence            76653

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=86.00  E-value=58  Score=36.69  Aligned_cols=186  Identities=13%  Similarity=0.101  Sum_probs=108.1

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCC----ccHHHHHHcCCHHHHHHHHcCCC-------HHHHHHHHHHHHhcccCch
Q 005598          451 LVDMLHSSETKIQENAVTALLNLSIND----NNKSAIANANAIEPLIHVLQTGS-------PEARENAAATLFSLSVIED  519 (689)
Q Consensus       451 Lv~lL~s~~~~v~~~Al~aL~nLs~~~----~~k~~i~~~g~l~~Lv~lL~s~~-------~~~~~~Aa~aL~nLs~~~~  519 (689)
                      +..++...+..-+..|+-....++.+.    .+|..+.++=+.+-+=++|.+++       .-.+..++.+|.-.+..++
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            344444444444555555556665443    45777888866666777776431       2345566667777777666


Q ss_pred             hHHHHHhhCChHHHHHhhcCC-CH------HHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc--CCChHHHHHHHH
Q 005598          520 NKIKIGRSGAIGPLVDLLGNG-TP------RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVA  590 (689)
Q Consensus       520 ~k~~I~~~g~I~~Lv~LL~~~-~~------~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~  590 (689)
                      ....----..||.|..++..+ ++      -....+-.+|..++..+.+...++..|+++++.++-  .+...-...|+.
T Consensus        96 lAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~  175 (698)
T KOG2611|consen   96 LASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALK  175 (698)
T ss_pred             hccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHH
Confidence            422111115688888888743 22      367788899999999999999999999999999874  222222334444


Q ss_pred             HHHHHhC----CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 005598          591 VLANLAT----IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT  638 (689)
Q Consensus       591 ~L~nLa~----~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~  638 (689)
                      ++-.+..    .++.-..+..  .+..+..=+...+...+...+..|..+..
T Consensus       176 Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~  225 (698)
T KOG2611|consen  176 VLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS  225 (698)
T ss_pred             HHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            4444333    1222222211  13333333333455666777777765433

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.77  E-value=68  Score=36.26  Aligned_cols=261  Identities=13%  Similarity=0.099  Sum_probs=135.6

Q ss_pred             hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCCccH
Q 005598          402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVD-MLHSSETKIQENAVTALLNLSINDNNK  480 (689)
Q Consensus       402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~-lL~s~~~~v~~~Al~aL~nLs~~~~~k  480 (689)
                      .+.++..+....++++...+..|++.|.+.+...|........ -.+..++. +.+..+.+|+.+++.+|.-+.....++
T Consensus       256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~  334 (533)
T KOG2032|consen  256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND  334 (533)
T ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence            3567788888888888888899999999999875444333332 23444444 444456889999999887765322221


Q ss_pred             HHHHHcCC---HHHHHHHHcCCCHHHHHHHHHHHHhcccCch--hHHHHHh--hCChHHHHHhhcCCCHHHHHHHHHHHH
Q 005598          481 SAIANANA---IEPLIHVLQTGSPEARENAAATLFSLSVIED--NKIKIGR--SGAIGPLVDLLGNGTPRGKKDAATALF  553 (689)
Q Consensus       481 ~~i~~~g~---l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~--~k~~I~~--~g~I~~Lv~LL~~~~~~v~~~Al~aL~  553 (689)
                      .  ...+.   .-.+..+.++.+++.+.+|..+...|+....  .+..+.+  .+...+++..|.+.++.+-. |++...
T Consensus       335 ~--l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~  411 (533)
T KOG2032|consen  335 D--LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSEL  411 (533)
T ss_pred             c--hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHH
Confidence            1  12222   3335567778889999999888888876332  2333332  23445555566666665444 444444


Q ss_pred             hhhhchHHHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHH-----Hh-CCchhHHHHHhcCcHHHHHHHhccCCHHHHH
Q 005598          554 NLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLAN-----LA-TIPDGRVAIGQENGIPVLVEVVELGSARGKE  627 (689)
Q Consensus       554 nLs~~~~n~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L~n-----La-~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e  627 (689)
                      ..+...-.+..  ..+.++..++.     ...  -...+.|     |. .+++--..+     ......++.+.-+.+++
T Consensus       412 ~~c~p~l~rke--~~~~~q~~ld~-----~~~--~~q~Fyn~~c~~L~~i~~d~l~~~-----~t~~~~~f~sswe~vr~  477 (533)
T KOG2032|consen  412 RTCYPNLVRKE--LYHLFQESLDT-----DMA--RFQAFYNQWCIQLNHIHPDILMLL-----LTEDQHIFSSSWEQVRE  477 (533)
T ss_pred             HhcCchhHHHH--HHHHHhhhhHH-----hHH--HHHHHHHHHHHHHhhhCHHHHHHH-----HHhchhheecchHHHHH
Confidence            43332211211  11222222110     000  1111111     00 011100000     01111122223345555


Q ss_pred             HHHHHHHHHhhCC-HhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598          628 NAAAALLQLCTNS-SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       628 ~Av~aL~~L~~~~-~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~  680 (689)
                      .|+..-.++.-+. +.++..+-..-....|..+.+...+.+++.|..+|..+..
T Consensus       478 aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  478 AAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            5555444444332 2333333223345567777778889999999988877653

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=85.42  E-value=22  Score=39.76  Aligned_cols=187  Identities=16%  Similarity=0.172  Sum_probs=110.4

Q ss_pred             hhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCccH
Q 005598          403 ETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQENAVTALLNLSINDNNK  480 (689)
Q Consensus       403 ~~~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL-~s~~~~v~~~Al~aL~nLs~~~~~k  480 (689)
                      ...+..++....+ .++..+..++..+..+.-.-+..- .+  ..++..+...+ .......+..++.++.-++     |
T Consensus       188 ~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~-----K  259 (415)
T PF12460_consen  188 EELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DL--DEFLDSLLQSISSSEDSELRPQALEILIWIT-----K  259 (415)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHH-----H
Confidence            3577778877664 456667777777777765311111 11  12333443333 2223333334444333322     2


Q ss_pred             HHHHH-----cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccC-chh--------HHHHHhh----CChHHHHHhhcCCCH
Q 005598          481 SAIAN-----ANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDN--------KIKIGRS----GAIGPLVDLLGNGTP  542 (689)
Q Consensus       481 ~~i~~-----~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~-~~~--------k~~I~~~----g~I~~Lv~LL~~~~~  542 (689)
                      ..++.     ...+..|+.+|.+  .++...|+..+.-|..+ ++.        -..+...    -.+|.|++..+..+.
T Consensus       260 aLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~  337 (415)
T PF12460_consen  260 ALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD  337 (415)
T ss_pred             HHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence            22222     1346667788866  66777888888877665 331        1122222    456777777777676


Q ss_pred             HHHHHHHHHHHhhhhchHHHHHHHH-hCcHHHHHHhcC-CChHHHHHHHHHHHHHhCCc
Q 005598          543 RGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMD-PAAGMVDKAVAVLANLATIP  599 (689)
Q Consensus       543 ~v~~~Al~aL~nLs~~~~n~~~lv~-~G~v~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~  599 (689)
                      ..+..-+.||.++..+-+....+-+ ...+|.|++-|+ ++..+...++.+|..+....
T Consensus       338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            6888888899988875443333333 568888999884 56678889999999888755

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=85.15  E-value=23  Score=41.17  Aligned_cols=160  Identities=14%  Similarity=0.195  Sum_probs=97.5

Q ss_pred             hhcCCCHHHHHHHHHHHHHhhcCCccHHHHHH----cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCC
Q 005598          454 MLHSSETKIQENAVTALLNLSINDNNKSAIAN----ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGA  529 (689)
Q Consensus       454 lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~----~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~  529 (689)
                      .+.....+++.-|+-+|.-+..+...-..+..    ...+..++..+. +.+..+..++++|.|+-.+...+..+...  
T Consensus       552 ~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--  628 (745)
T KOG0301|consen  552 ILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--  628 (745)
T ss_pred             HHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--
Confidence            33445667777777777666655443333322    246666676665 66778889999999998887777666543  


Q ss_pred             hHHHHHhh---cC-CCHHHHHHHHHHHHhhhh--chHHHHHHHHhCcHHHHHHhc----CCChH--HHHHHHHHHHHHhC
Q 005598          530 IGPLVDLL---GN-GTPRGKKDAATALFNLSI--YHENKARIVQAGAVKHLVDLM----DPAAG--MVDKAVAVLANLAT  597 (689)
Q Consensus       530 I~~Lv~LL---~~-~~~~v~~~Al~aL~nLs~--~~~n~~~lv~~G~v~~Lv~LL----~~~~~--v~e~Al~~L~nLa~  597 (689)
                      +..++..+   +. .+..+..+.+....|++.  ...+-+    .+..+.|..++    ++-.+  -.-+.+-+|.+|+.
T Consensus       629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t  704 (745)
T KOG0301|consen  629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT  704 (745)
T ss_pred             HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence            22222222   22 245566665556666654  122211    45555555443    33222  23456778888998


Q ss_pred             CchhHHHHHhcCcHHHHHHHhcc
Q 005598          598 IPDGRVAIGQENGIPVLVEVVEL  620 (689)
Q Consensus       598 ~~e~r~~i~~~g~v~~Lv~lL~s  620 (689)
                      .+.....+.+.-.+..+++.++.
T Consensus       705 ~~~~~~~~A~~~~v~sia~~~~~  727 (745)
T KOG0301|consen  705 VDASVIQLAKNRSVDSIAKKLKE  727 (745)
T ss_pred             ccHHHHHHHHhcCHHHHHHHHHH
Confidence            88888888887778888888864

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=85.13  E-value=0.41  Score=56.41  Aligned_cols=46  Identities=17%  Similarity=0.442  Sum_probs=35.0

Q ss_pred             ccccccccccc--C---cee--cCCCccccHHHHHHHHhcC-CCCCCCCCCcCC
Q 005598          101 FCCPLSLELMT--D---PVI--VASGQTYERAFIKKWIDLG-LFVCPKTRQTLA  146 (689)
Q Consensus       101 f~CpI~~~lm~--d---PV~--~~~G~ty~r~~I~~~l~~~-~~~cP~t~~~l~  146 (689)
                      -.|+||..++.  |   |--  ..|.|.|--+|+-+|+..+ ..+||.||..++
T Consensus      1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            46999998875  3   322  2377899999999999864 567999997654

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=85.08  E-value=15  Score=42.30  Aligned_cols=97  Identities=18%  Similarity=0.297  Sum_probs=59.3

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhh-cCCccHH
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS-INDNNKS  481 (689)
Q Consensus       403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs-~~~~~k~  481 (689)
                      ...+..++.+..+.+..++.+|++.|-.+|+++++.-..+     +..|+++|.++++.....+-.+|..|- .++    
T Consensus        58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~----  128 (556)
T PF05918_consen   58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDP----  128 (556)
T ss_dssp             HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-H----
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCc----
Confidence            4678889999999999999999999999999877665555     568999999887654444444444432 111    


Q ss_pred             HHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHH
Q 005598          482 AIANANAIEPLIHVLQ---TGSPEARENAAATLF  512 (689)
Q Consensus       482 ~i~~~g~l~~Lv~lL~---s~~~~~~~~Aa~aL~  512 (689)
                          .+.+..|+..+.   +++..+|+.++..|.
T Consensus       129 ----k~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen  129 ----KGTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             ----HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence                234455554443   566778888776663

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=84.89  E-value=20  Score=41.68  Aligned_cols=165  Identities=18%  Similarity=0.193  Sum_probs=100.2

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHh---cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Q 005598          409 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN---CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN  485 (689)
Q Consensus       409 Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~---~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~  485 (689)
                      .+..+..-.++.+..|+..||.+.++...+-..+-.   +..+..|+..+. .++..+..++++|.|+-.++.++..+..
T Consensus       549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s  627 (745)
T KOG0301|consen  549 ALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMS  627 (745)
T ss_pred             HHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHH
Confidence            334444556778889999999998876555444332   235555555554 4566778889999999877777777665


Q ss_pred             c--CCHHHHHHHHcCCCHHHHHHHHHHHHhccc--CchhHHHHHhhCChHHHHHhhcC-----CCHHHHHHHHHHHHhhh
Q 005598          486 A--NAIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIGRSGAIGPLVDLLGN-----GTPRGKKDAATALFNLS  556 (689)
Q Consensus       486 ~--g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~--~~~~k~~I~~~g~I~~Lv~LL~~-----~~~~v~~~Al~aL~nLs  556 (689)
                      .  -.+..++..=...+..++...+....|++.  ...+-    +.+..+.|..++..     .+-+.....+.||.+|+
T Consensus       628 ~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~  703 (745)
T KOG0301|consen  628 RLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM  703 (745)
T ss_pred             HHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence            4  122222222222334555555555555543  11111    13445554444432     13456778888999999


Q ss_pred             hchHHHHHHHHhCcHHHHHHhc
Q 005598          557 IYHENKARIVQAGAVKHLVDLM  578 (689)
Q Consensus       557 ~~~~n~~~lv~~G~v~~Lv~LL  578 (689)
                      ..+....++...--|..+++-+
T Consensus       704 t~~~~~~~~A~~~~v~sia~~~  725 (745)
T KOG0301|consen  704 TVDASVIQLAKNRSVDSIAKKL  725 (745)
T ss_pred             cccHHHHHHHHhcCHHHHHHHH
Confidence            9888888877766677666655

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=84.88  E-value=0.22  Score=41.09  Aligned_cols=49  Identities=31%  Similarity=0.496  Sum_probs=33.1

Q ss_pred             CCccccccccccccC-ceec-CCCccccHHHHHHHHhcC--CCCCCCCCCcCC
Q 005598           98 PSDFCCPLSLELMTD-PVIV-ASGQTYERAFIKKWIDLG--LFVCPKTRQTLA  146 (689)
Q Consensus        98 p~~f~CpI~~~lm~d-PV~~-~~G~ty~r~~I~~~l~~~--~~~cP~t~~~l~  146 (689)
                      |-+-.||-|.-.=.| |.++ -|-|.|-+.||.+|+...  ...||.||+...
T Consensus        29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            444455555432222 4444 689999999999999753  345999998754

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=84.78  E-value=0.69  Score=38.57  Aligned_cols=44  Identities=34%  Similarity=0.567  Sum_probs=31.9

Q ss_pred             cccccccccc----Ccee-cCCCccccHHHHHHHHhcCCCCCCCCCCcCC
Q 005598          102 CCPLSLELMT----DPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLA  146 (689)
Q Consensus       102 ~CpI~~~lm~----dPV~-~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~  146 (689)
                      +||=|+-=|.    =||+ --|.|.|--.||.+||... ..||.++++..
T Consensus        33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk-~~CPld~q~w~   81 (88)
T COG5194          33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK-GVCPLDRQTWV   81 (88)
T ss_pred             cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC-CCCCCCCceeE
Confidence            4555555441    1344 3699999999999999985 56999998754

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.81  E-value=89  Score=40.02  Aligned_cols=213  Identities=15%  Similarity=0.131  Sum_probs=117.2

Q ss_pred             hHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCcccHHHHHhc--CcHHHHHHhhcCCCHHHHHHHHHHHHHhh-cCCcc
Q 005598          404 TQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLHSSETKIQENAVTALLNLS-INDNN  479 (689)
Q Consensus       404 ~~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~--g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs-~~~~~  479 (689)
                      ..|.....+-++ ..+..+.-|+.-+..++...   +..+...  -.||.|.+.-..++..|+. |+.-+++.- .+...
T Consensus       956 dLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~ 1031 (1702)
T KOG0915|consen  956 DLVYKFMQLANHNATWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKK 1031 (1702)
T ss_pred             HHHHHHHHHhhhhchhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHH
Confidence            445555555443 24444556666666666533   2223221  3567776666667777765 566666643 33222


Q ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhh-CChHHHHHhhcCCCHHHHHH---HHHHHHhh
Q 005598          480 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS-GAIGPLVDLLGNGTPRGKKD---AATALFNL  555 (689)
Q Consensus       480 k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~-g~I~~Lv~LL~~~~~~v~~~---Al~aL~nL  555 (689)
                      ..--.-...++-|+.-|.+....+|+.++.+|..|....+.-...-.. ..+..+.+.+.+=...++++   ++.+|..|
T Consensus      1032 ~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1032 VVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKL 1111 (1702)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211222356777777777888999999999999997754332222111 45666666665444445554   45555555


Q ss_pred             hh-----chHHHHHHHHhCcHHHHHH--hcCCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhcc
Q 005598          556 SI-----YHENKARIVQAGAVKHLVD--LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL  620 (689)
Q Consensus       556 s~-----~~~n~~~lv~~G~v~~Lv~--LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s  620 (689)
                      +.     .+..+..-+-..++|.|++  +++.-.++...+++++.-|+.+....-.-.-...++.|+.....
T Consensus      1112 ~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~ 1183 (1702)
T KOG0915|consen 1112 CVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE 1183 (1702)
T ss_pred             HhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccc
Confidence            54     1222233333445555544  23445677888999999998865542111112234555555433

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=83.79  E-value=2.3  Score=28.84  Aligned_cols=29  Identities=21%  Similarity=0.377  Sum_probs=25.7

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhhC
Q 005598          611 IPVLVEVVELGSARGKENAAAALLQLCTN  639 (689)
Q Consensus       611 v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~  639 (689)
                      +|.+++++.+.++.+|..|+.+|..++..
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            68899999999999999999999998864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=83.63  E-value=1.9  Score=29.25  Aligned_cols=29  Identities=17%  Similarity=0.360  Sum_probs=25.1

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005598          447 AINILVDMLHSSETKIQENAVTALLNLSI  475 (689)
Q Consensus       447 ~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~  475 (689)
                      .+|.|++++++++++|+..|+.+|..++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            37889999999999999999999998863

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=83.38  E-value=19  Score=43.17  Aligned_cols=263  Identities=14%  Similarity=0.093  Sum_probs=130.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-CcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhh-cCCccHHH
Q 005598          405 QVRKLVEDLKSTSLDTQREATAELRLLAKH-NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS-INDNNKSA  482 (689)
Q Consensus       405 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~-s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs-~~~~~k~~  482 (689)
                      .++.....++....+.+..++.....++.. +...+..+.....+|.+-.+..+.+..++...+..+..++ ..+  +..
T Consensus       356 ~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~  433 (759)
T KOG0211|consen  356 LVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KER  433 (759)
T ss_pred             chhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCc
Confidence            455566666666556565555555555442 2223344444455677767776666666655555554442 111  000


Q ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHH
Q 005598          483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN  561 (689)
Q Consensus       483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n  561 (689)
                       .-.-.++.++..++...+.++.+....+..+-. .+.........-.++.++.+-.....+++.+.+..+..++.... 
T Consensus       434 -ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~-  511 (759)
T KOG0211|consen  434 -TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG-  511 (759)
T ss_pred             -CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh-
Confidence             012355666677777778888887766655433 22233334445567777777666677788887777777766433 


Q ss_pred             HHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCC
Q 005598          562 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS  640 (689)
Q Consensus       562 ~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~  640 (689)
                       ..+.+.-..+.+...+ +....+.+.|...|..++..-. .+. .....++.++.+...++...+...+..+..++.-.
T Consensus       512 -~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w-~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~  588 (759)
T KOG0211|consen  512 -VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEW-ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVL  588 (759)
T ss_pred             -hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cch-hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHh
Confidence             2333333333333333 2334555666666665554111 111 11122344444443333333333333333222211


Q ss_pred             HhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 005598          641 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY  677 (689)
Q Consensus       641 ~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~  677 (689)
                      .   ..+.....++.+..+.....+.+|-+++..|..
T Consensus       589 g---~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~  622 (759)
T KOG0211|consen  589 G---QEITCEDLLPVFLDLVKDPVANVRINVAKHLPK  622 (759)
T ss_pred             c---cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHH
Confidence            1   222233345555555555555555555544443

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=83.32  E-value=6.2  Score=32.87  Aligned_cols=66  Identities=11%  Similarity=0.119  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCC
Q 005598          585 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSSRFCSMVLQEG  651 (689)
Q Consensus       585 ~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s-~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g  651 (689)
                      ...|++++++++..+.+.+.+.+.++++.++++... ....+|-.|..+|.-+++... .++.+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~-G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE-GAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH-HHHHHHHcC
Confidence            467999999999999999999989999999999975 567788888888877776544 555554444

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=83.18  E-value=37  Score=37.44  Aligned_cols=82  Identities=16%  Similarity=0.137  Sum_probs=57.3

Q ss_pred             CHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhh-cCCccHHH-HHHcCCH
Q 005598          417 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-----ETKIQENAVTALLNLS-INDNNKSA-IANANAI  489 (689)
Q Consensus       417 ~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~-----~~~v~~~Al~aL~nLs-~~~~~k~~-i~~~g~l  489 (689)
                      +.++...++++|.++...++..|..+.+...+..++.++...     ...+...-+..|.-|. .....|.. +++.+++
T Consensus       110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl  189 (532)
T KOG4464|consen  110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL  189 (532)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence            446778999999999999999999988887777666665331     1234445555665553 34455554 5567999


Q ss_pred             HHHHHHHcC
Q 005598          490 EPLIHVLQT  498 (689)
Q Consensus       490 ~~Lv~lL~s  498 (689)
                      +.+...|..
T Consensus       190 ~~lt~~led  198 (532)
T KOG4464|consen  190 ELLTNWLED  198 (532)
T ss_pred             HHHHHHhhc
Confidence            999988864

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=83.01  E-value=11  Score=38.12  Aligned_cols=144  Identities=16%  Similarity=0.132  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCCc--cHHHHHHcCCHHHHH
Q 005598          421 QREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-----SETKIQENAVTALLNLSINDN--NKSAIANANAIEPLI  493 (689)
Q Consensus       421 q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s-----~~~~v~~~Al~aL~nLs~~~~--~k~~i~~~g~l~~Lv  493 (689)
                      ...|+..|.-++. .++.+..+.++.+--.|-.+|..     ..+-++..++.+++.|..++.  ....+..-..+|.++
T Consensus       117 vcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         117 VCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            3567777777877 56888888877554444555532     234577888999998876543  344455668999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhh--------CChHHHHH-hhcCCCHHHHHHHHHHHHhhhhchHHHHH
Q 005598          494 HVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--------GAIGPLVD-LLGNGTPRGKKDAATALFNLSIYHENKAR  564 (689)
Q Consensus       494 ~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~--------g~I~~Lv~-LL~~~~~~v~~~Al~aL~nLs~~~~n~~~  564 (689)
                      +++..++.-.+..|+.++..+..++..-..|+..        .++..++. +...+..+..+.++++-..|+..+..|..
T Consensus       196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l  275 (315)
T COG5209         196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL  275 (315)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence            9999999888888888887777766654444331        22333332 23456778888888888888887776654


Q ss_pred             H
Q 005598          565 I  565 (689)
Q Consensus       565 l  565 (689)
                      +
T Consensus       276 L  276 (315)
T COG5209         276 L  276 (315)
T ss_pred             H
Confidence            3

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=82.61  E-value=40  Score=37.68  Aligned_cols=128  Identities=18%  Similarity=0.229  Sum_probs=80.9

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHhhhhc-hH--------HHHHHHHh----CcHHHHHHhc-CCChHHHHHHHHHHHH
Q 005598          529 AIGPLVDLLGNGTPRGKKDAATALFNLSIY-HE--------NKARIVQA----GAVKHLVDLM-DPAAGMVDKAVAVLAN  594 (689)
Q Consensus       529 ~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~~--------n~~~lv~~----G~v~~Lv~LL-~~~~~v~e~Al~~L~n  594 (689)
                      .+..|+.+|.+  +.+...++.++.-|..+ ++        +...+.+.    -++|.|++-. ..+.......+.+|.+
T Consensus       272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~  349 (415)
T PF12460_consen  272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSH  349 (415)
T ss_pred             HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence            45667777776  55566666666666554 22        22333343    3556666665 3344467788889999


Q ss_pred             HhCCchhHHHHHh-cCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHh
Q 005598          595 LATIPDGRVAIGQ-ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL  659 (689)
Q Consensus       595 La~~~e~r~~i~~-~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~L  659 (689)
                      |..+-.....+-+ ...+|.|++-|...+..++..+..+|..+....++....=+ ...|+.|+.+
T Consensus       350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl-~sLI~~LL~l  414 (415)
T PF12460_consen  350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHL-SSLIPRLLKL  414 (415)
T ss_pred             HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH-HHHHHHHHhc
Confidence            8885443333333 24689999999889999999999999999988764333211 1345555543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=82.58  E-value=26  Score=41.30  Aligned_cols=132  Identities=21%  Similarity=0.213  Sum_probs=83.3

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHhcccCchhHHHH
Q 005598          446 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIKI  524 (689)
Q Consensus       446 g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~l-L~s~~~~~~~~Aa~aL~nLs~~~~~k~~I  524 (689)
                      ++=+.+-.++...++-++...+..+..-=...      ...+++..|+.+ .++.+.++|..|+-+|.-++..+.     
T Consensus       519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp-----  587 (929)
T KOG2062|consen  519 DADPLIKELLRDKDPILRYGGMYTLALAYVGT------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP-----  587 (929)
T ss_pred             hhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc------CchhhHHHhhcccccccchHHHHHHHHHheeeEecCh-----
Confidence            34444555666677777776665553210111      123566777776 667889999999999988765433     


Q ss_pred             HhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 005598          525 GRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT  597 (689)
Q Consensus       525 ~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~  597 (689)
                         ..++..|.+|... ++.++.-++.+|.--|....++..      +..|-.+. ++..-++..|+-+++.+..
T Consensus       588 ---~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA------i~lLepl~~D~~~fVRQgAlIa~amIm~  653 (929)
T KOG2062|consen  588 ---EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA------INLLEPLTSDPVDFVRQGALIALAMIMI  653 (929)
T ss_pred             ---hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH------HHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence               4567778888754 788999999999887776555543      22222233 4444556677777776543

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=82.38  E-value=65  Score=38.18  Aligned_cols=151  Identities=17%  Similarity=0.144  Sum_probs=86.6

Q ss_pred             HHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHh-hcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHH
Q 005598          494 HVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDL-LGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVK  572 (689)
Q Consensus       494 ~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~L-L~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~  572 (689)
                      +++.+.++-+|...+.++..- ..     --++.++|..|+++ +.+.+.+++++|+.+|.-++..+..        .++
T Consensus       526 el~~dkdpilR~~Gm~t~alA-y~-----GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~  591 (929)
T KOG2062|consen  526 ELLRDKDPILRYGGMYTLALA-YV-----GTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLP  591 (929)
T ss_pred             HHhcCCchhhhhhhHHHHHHH-Hh-----ccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChh--------hch
Confidence            455555565655554443321 00     01133667777777 5567899999999999877663332        345


Q ss_pred             HHHHhc-C-CChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHH-hhCCHhhHHHHHh
Q 005598          573 HLVDLM-D-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL-CTNSSRFCSMVLQ  649 (689)
Q Consensus       573 ~Lv~LL-~-~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L-~~~~~~~~~~lv~  649 (689)
                      ..+.+| + -+..++-.++-+|...|.....++++      ..|-.++.....-++..|+-++..+ +..++..+..+  
T Consensus       592 s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--  663 (929)
T KOG2062|consen  592 STVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--  663 (929)
T ss_pred             HHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--
Confidence            667777 2 34556666777777777655444443      3444444556677888888777664 33344333322  


Q ss_pred             CCChHHHHHhhhcCCHH
Q 005598          650 EGAVPPLVALSQSGTPR  666 (689)
Q Consensus       650 ~g~i~~L~~LL~~~~~~  666 (689)
                      .+....|.+++....+.
T Consensus       664 ~~frk~l~kvI~dKhEd  680 (929)
T KOG2062|consen  664 NGFRKQLEKVINDKHED  680 (929)
T ss_pred             HHHHHHHHHHhhhhhhH
Confidence            23444555566555543

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=82.22  E-value=2.2  Score=47.42  Aligned_cols=176  Identities=17%  Similarity=0.103  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHhhcCCccHHHH-HHcCCHHHHHHHHcCCCHHHHHHHHHHHHhccc-----Cch---hHHHHHhhCChHH
Q 005598          462 IQENAVTALLNLSINDNNKSAI-ANANAIEPLIHVLQTGSPEARENAAATLFSLSV-----IED---NKIKIGRSGAIGP  532 (689)
Q Consensus       462 v~~~Al~aL~nLs~~~~~k~~i-~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~-----~~~---~k~~I~~~g~I~~  532 (689)
                      +...|++++..+..++..+... .-.++...++..|.+.....|+.+++++.|++.     .+.   ..+.+.. -.+..
T Consensus       407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~  485 (728)
T KOG4535|consen  407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLK  485 (728)
T ss_pred             HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHH
Confidence            4556666766666666554432 334566777777777777889999999999864     111   1222211 11222


Q ss_pred             HHHhhc---CCCHHHHHHHHHHHHhhhhchHHH----HHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhH-
Q 005598          533 LVDLLG---NGTPRGKKDAATALFNLSIYHENK----ARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGR-  602 (689)
Q Consensus       533 Lv~LL~---~~~~~v~~~Al~aL~nLs~~~~n~----~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r-  602 (689)
                      ++.+-.   -...+++.+|..+|.|+...-...    ......|.+..++.-.  ...-.+.-+|+.+++||-.++.-. 
T Consensus       486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l  565 (728)
T KOG4535|consen  486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL  565 (728)
T ss_pred             HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence            222221   235788889999999987632211    1122233333333322  345577889999999999876542 


Q ss_pred             HHH-HhcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhh
Q 005598          603 VAI-GQENGIPVLVEVVEL-GSARGKENAAAALLQLCT  638 (689)
Q Consensus       603 ~~i-~~~g~v~~Lv~lL~s-~s~~~~e~Av~aL~~L~~  638 (689)
                      +.. ....+.+.|..++.. .+-+++.+|+.+|..-..
T Consensus       566 q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  566 QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence            111 112246777777754 577888888888876554

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=82.19  E-value=2  Score=47.61  Aligned_cols=173  Identities=18%  Similarity=0.103  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHhcccCchhHHHH-HhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc-----hH---HHHHHHHhCcHHH
Q 005598          503 ARENAAATLFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-----HE---NKARIVQAGAVKH  573 (689)
Q Consensus       503 ~~~~Aa~aL~nLs~~~~~k~~I-~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-----~~---n~~~lv~~G~v~~  573 (689)
                      ++..|.+++.-+..++..+... ....+...++..|.+..-..+..+++++.|++..     +.   ...++.. -.+..
T Consensus       407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~  485 (728)
T KOG4535|consen  407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLK  485 (728)
T ss_pred             HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHH
Confidence            4444555554444455544432 2335556666666666677888899999988651     11   1122222 12222


Q ss_pred             HHHhc----CCChHHHHHHHHHHHHHhCCchhH-----HHHHhcCcHHHH-HHHhccCCHHHHHHHHHHHHHHhhCCHh-
Q 005598          574 LVDLM----DPAAGMVDKAVAVLANLATIPDGR-----VAIGQENGIPVL-VEVVELGSARGKENAAAALLQLCTNSSR-  642 (689)
Q Consensus       574 Lv~LL----~~~~~v~e~Al~~L~nLa~~~e~r-----~~i~~~g~v~~L-v~lL~s~s~~~~e~Av~aL~~L~~~~~~-  642 (689)
                      ++..-    ..+..+...|+.+|.|+...-...     .++. .+.+..+ -.....+.-.++-+|+.+|.||.++..- 
T Consensus       486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~-~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~  564 (728)
T KOG4535|consen  486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEII-EESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALP  564 (728)
T ss_pred             HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHH-HHHHHhcccceecccccccchHHHHHHHHhhcCcccc
Confidence            22221    234567788999999986532211     1111 2222222 2222346778999999999999987641 


Q ss_pred             hHHHHHhCCChHHHHHhhhcC-CHHHHHHHHHHHHH
Q 005598          643 FCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSY  677 (689)
Q Consensus       643 ~~~~lv~~g~i~~L~~LL~~~-~~~vr~~A~~lL~~  677 (689)
                      .+..-+-.-+++.|+.|+... +-++|-.|+.+|..
T Consensus       565 lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v  600 (728)
T KOG4535|consen  565 LQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV  600 (728)
T ss_pred             ccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence            223333345688888887765 45777777776643

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.19  E-value=0.87  Score=48.67  Aligned_cols=47  Identities=19%  Similarity=0.224  Sum_probs=37.7

Q ss_pred             ccccccccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005598          100 DFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH  147 (689)
Q Consensus       100 ~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~l~~~~~~cP~t~~~l~~  147 (689)
                      .-.|=||+.=-+|=|++||-|. .|..|-+.--- ....||+||+++..
T Consensus       290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRY-QTNNCPICRQPIEE  337 (349)
T ss_pred             CCeeEEEecCCcceEEecchhhehhHhHHHHHHH-hhcCCCccccchHh
Confidence            4689999999999999999998 79998665432 22449999998754

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=82.18  E-value=11  Score=38.06  Aligned_cols=145  Identities=14%  Similarity=0.080  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHc---CC--CHHHHHHHHHHHHhcccCchh--HHHHHhhCChHHHH
Q 005598          462 IQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ---TG--SPEARENAAATLFSLSVIEDN--KIKIGRSGAIGPLV  534 (689)
Q Consensus       462 v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~---s~--~~~~~~~Aa~aL~nLs~~~~~--k~~I~~~g~I~~Lv  534 (689)
                      -..+|+.+|.-++.+++.|..+.++-.---|..+|.   +.  -..+|..++++|..|..+++.  -..+....++|.++
T Consensus       116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            345667777667788898888887643333334443   22  256899999999999886543  33344568999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHH----hC----cHHHHHHhc-C-CChHHHHHHHHHHHHHhCCchhHHH
Q 005598          535 DLLGNGTPRGKKDAATALFNLSIYHENKARIVQ----AG----AVKHLVDLM-D-PAAGMVDKAVAVLANLATIPDGRVA  604 (689)
Q Consensus       535 ~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~----~G----~v~~Lv~LL-~-~~~~v~e~Al~~L~nLa~~~e~r~~  604 (689)
                      +++..++.-.+..|+.++..+..++.+-+.+.+    --    ++..++.-+ + ....+...++.+--.|+..+..|..
T Consensus       196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l  275 (315)
T COG5209         196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL  275 (315)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence            999999888888888777776666654433322    12    222222222 2 3456677888888888888887776


Q ss_pred             HH
Q 005598          605 IG  606 (689)
Q Consensus       605 i~  606 (689)
                      +.
T Consensus       276 L~  277 (315)
T COG5209         276 LS  277 (315)
T ss_pred             Hh
Confidence            64

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=81.50  E-value=99  Score=35.70  Aligned_cols=106  Identities=18%  Similarity=0.103  Sum_probs=60.9

Q ss_pred             HHHHHHHHhcCCC----HHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccH
Q 005598          405 QVRKLVEDLKSTS----LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK  480 (689)
Q Consensus       405 ~V~~Lv~~L~s~~----~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k  480 (689)
                      ..-.|++.+.+..    ......-++.+..|.+.++..+..+     .|.|-.-|.+....|..+++.++..++...-.-
T Consensus       224 a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~  298 (898)
T COG5240         224 AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENVGS  298 (898)
T ss_pred             HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhccCH
Confidence            3445666665432    1111223344455555444333332     345555555556778888888888876322111


Q ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccC
Q 005598          481 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI  517 (689)
Q Consensus       481 ~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~  517 (689)
                       .++ ...+..|-.+|++.....|-.|+++|..|+..
T Consensus       299 -~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~  333 (898)
T COG5240         299 -QFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMK  333 (898)
T ss_pred             -HHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhh
Confidence             111 13455666778888888999999999998863

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.30  E-value=0.68  Score=49.55  Aligned_cols=49  Identities=22%  Similarity=0.387  Sum_probs=41.9

Q ss_pred             ccccccccccccC---ceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCC
Q 005598          100 DFCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT  148 (689)
Q Consensus       100 ~f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~  148 (689)
                      .+.|.|++++|.|   |++.|.|++|-...|+.|=..++-.||.++..+...
T Consensus       330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~  381 (389)
T KOG0396|consen  330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS  381 (389)
T ss_pred             HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence            3789999999986   999999999999999999776657799998877553

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=81.21  E-value=60  Score=35.06  Aligned_cols=157  Identities=15%  Similarity=0.109  Sum_probs=110.2

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-cCcccHHHHHh-cCc-HHHHHHhhcCC-----C--------HHHHHHHH
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAK-HNMDNRMVIAN-CGA-INILVDMLHSS-----E--------TKIQENAV  467 (689)
Q Consensus       404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~-~s~~nr~~i~~-~g~-I~~Lv~lL~s~-----~--------~~v~~~Al  467 (689)
                      ..++.+-+.|.+.....+..+++.|..++. .+......+.. -+. .+.|..++...     .        +.++...+
T Consensus        56 ~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI  135 (330)
T PF11707_consen   56 NHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI  135 (330)
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence            457788888888888888899999999887 55444444443 343 44566665321     1        16777777


Q ss_pred             HHHHHhhc--CCccHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHh-cccCc----hhHHHHHhhCChHHHHHhhcC
Q 005598          468 TALLNLSI--NDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFS-LSVIE----DNKIKIGRSGAIGPLVDLLGN  539 (689)
Q Consensus       468 ~aL~nLs~--~~~~k~~i~~-~g~l~~Lv~lL~s~~~~~~~~Aa~aL~n-Ls~~~----~~k~~I~~~g~I~~Lv~LL~~  539 (689)
                      ..+..+..  +...+..+.. .+.+..+.+-|...+.++....+.+|.. +..++    ..|..+....++..|+.+...
T Consensus       136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~  215 (330)
T PF11707_consen  136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR  215 (330)
T ss_pred             HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence            77666643  3445665555 4678889999988889999999988885 33332    346667778899999998876


Q ss_pred             CCH----HHHHHHHHHHHhhhhchH
Q 005598          540 GTP----RGKKDAATALFNLSIYHE  560 (689)
Q Consensus       540 ~~~----~v~~~Al~aL~nLs~~~~  560 (689)
                      ...    .+...+-..|..+|.++.
T Consensus       216 ~~~~~~~~~~~~vh~fL~~lcT~p~  240 (330)
T PF11707_consen  216 DGEDEKSSVADLVHEFLLALCTDPK  240 (330)
T ss_pred             cCCcccchHHHHHHHHHHHHhcCCC
Confidence            655    788888888888887544

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74)

Probab=81.14  E-value=1  Score=40.00  Aligned_cols=58  Identities=19%  Similarity=0.478  Sum_probs=34.8

Q ss_pred             CCCCCCC-ccccccccccccCceecC-CC-----ccccHHHHHHHHhcCCCCCCCCCCcCCCCCCC
Q 005598           93 SPVPIPS-DFCCPLSLELMTDPVIVA-SG-----QTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI  151 (689)
Q Consensus        93 ~~~~~p~-~f~CpI~~~lm~dPV~~~-~G-----~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~  151 (689)
                      ..+.-|+ .+.|||++++.+.-|.+. ++     .-||+.++.+-...|. .=|.+|+|++...++
T Consensus        32 ~~f~C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~-~HPLSREpit~sMIv   96 (113)
T PF06416_consen   32 EEFQCPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGA-PHPLSREPITPSMIV   96 (113)
T ss_dssp             CCCTS-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TTTEE
T ss_pred             hhccCCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCC-CCCCccCCCChhhEe
Confidence            3444555 589999999999999763 22     2399999999998873 469999998876543

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=81.07  E-value=3.2  Score=42.43  Aligned_cols=81  Identities=26%  Similarity=0.238  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHhhhhchHHHHHHHHhC-------cHHHHHHhc--CCChHHHHHHHHHHHHHhCCchh--HHHHHhcCc
Q 005598          542 PRGKKDAATALFNLSIYHENKARIVQAG-------AVKHLVDLM--DPAAGMVDKAVAVLANLATIPDG--RVAIGQENG  610 (689)
Q Consensus       542 ~~v~~~Al~aL~nLs~~~~n~~~lv~~G-------~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~--r~~i~~~g~  610 (689)
                      -.-++.|+.+|+.|+..+.|...++..+       .+..|+++|  ..+.-..|-|+.+|.+||...+.  |....+.+.
T Consensus       138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            3568899999999999999887776644       555666666  34556678999999999996654  344457788


Q ss_pred             HHHHHHHhccCC
Q 005598          611 IPVLVEVVELGS  622 (689)
Q Consensus       611 v~~Lv~lL~s~s  622 (689)
                      |..|+.++....
T Consensus       218 i~~Li~FiE~a~  229 (257)
T PF12031_consen  218 ISHLIAFIEDAE  229 (257)
T ss_pred             HHHHHHHHHHHH
Confidence            999999986543

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF04641 Rtf2: Rtf2 RING-finger

Probab=80.90  E-value=1.7  Score=45.39  Aligned_cols=37  Identities=22%  Similarity=0.349  Sum_probs=32.5

Q ss_pred             CccccccccccccCceec-CCCccccHHHHHHHHhcCC
Q 005598           99 SDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGL  135 (689)
Q Consensus        99 ~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~l~~~~  135 (689)
                      ..++|+|+++.+.+||+. .-|+-|.+..|..||....
T Consensus        33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~   70 (260)
T PF04641_consen   33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKK   70 (260)
T ss_pred             CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcC
Confidence            357899999999999975 5799999999999998653

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.78  E-value=1.3  Score=46.98  Aligned_cols=52  Identities=21%  Similarity=0.337  Sum_probs=41.9

Q ss_pred             CceecCCCccccHHHHHHHHhcCCCCCCCCCCcC--C---CCCCCccHHHHHHHHHH
Q 005598          112 DPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL--A---HTTLIPNYTVKALIANW  163 (689)
Q Consensus       112 dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l--~---~~~l~pn~~l~~~i~~~  163 (689)
                      -|=++.||||+|..|+...+..+...||+||.+.  .   .+.|..|+.+...|+..
T Consensus        21 ~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen   21 IPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            3556779999999999999988777799999983  2   24578888888888765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=80.56  E-value=28  Score=41.61  Aligned_cols=191  Identities=16%  Similarity=0.144  Sum_probs=111.6

Q ss_pred             HHHHhhccCcccHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHH--HHHHHHcCCCH-H
Q 005598          427 ELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIE--PLIHVLQTGSP-E  502 (689)
Q Consensus       427 ~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s-~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~--~Lv~lL~s~~~-~  502 (689)
                      .|...+..++.+...+.+.|++..+...++. ....++..++..|.|++...+.+........+.  .+-.++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            7788899999999999999999999999985 456788999999999986554444333222222  33335544444 7


Q ss_pred             HHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHH-HHHhc--C
Q 005598          503 ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKH-LVDLM--D  579 (689)
Q Consensus       503 ~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~-Lv~LL--~  579 (689)
                      .-.+|+.+|+.+..+.+.   ....+..+....++..           ++-..   .....++....-+.. +..++  .
T Consensus       574 rsY~~~siLa~ll~~~~~---~~~~~~r~~~~~~l~e-----------~i~~~---~~~~~~~~~~~~f~~~~~~il~~s  636 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEK---TTECVFRNSVNELLVE-----------AISRW---LTSEIRVINDRSFFPRILRILRLS  636 (699)
T ss_pred             HHHHHHHHHHHHHhCCCc---CccccchHHHHHHHHH-----------Hhhcc---CccceeehhhhhcchhHHHHhccc
Confidence            788888888888654332   1122222222222211           11111   111111222222222 33344  3


Q ss_pred             CChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhcc-CCHHHHHHHHHHHH
Q 005598          580 PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALL  634 (689)
Q Consensus       580 ~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s-~s~~~~e~Av~aL~  634 (689)
                      .....+-.|++++.++.. .++....+.+.++++.+..+-.. ....+++.+..++-
T Consensus       637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  693 (699)
T KOG3665|consen  637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE  693 (699)
T ss_pred             CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence            445566788888888887 45566667777777777666432 23444444444443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=80.30  E-value=16  Score=45.14  Aligned_cols=140  Identities=22%  Similarity=0.190  Sum_probs=103.6

Q ss_pred             hHHHHHHHHhc----CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcC-C
Q 005598          404 TQVRKLVEDLK----STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSIN-D  477 (689)
Q Consensus       404 ~~V~~Lv~~L~----s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~-s~~~~v~~~Al~aL~nLs~~-~  477 (689)
                      .+++.+++..+    .++|+.|..|.-+|..+..-+.+...     ...|.|+..+. ++++.++.+++-+|+.|+.. +
T Consensus       919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence            45566677664    46899999999999988765533222     35889999997 67899999999999988743 2


Q ss_pred             ccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598          478 NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI  557 (689)
Q Consensus       478 ~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~  557 (689)
                      ...     .-.-+.|...|.+.++.+|..|.-+|.+|...+    .|--.|.+..+..+|.+++.++...|-.....|+.
T Consensus       994 nli-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen  994 NLI-----EPWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred             ccc-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence            111     123455777888999999999999999986543    34346999999999999998888877755555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	689
1t1h_A	78	Nmr Solution Structure Of The U Box Domain From Atp		4e-21
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		3e-11
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		6e-05
2c2v_S	78	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		8e-05
2oxq_C	80	Structure Of The Ubch5 :chip U-Box Complex Length =		1e-04
2f42_A	179	Dimerization And U-Box Domains Of Zebrafish C-Termi		1e-04
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		4e-04
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		7e-04
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		8e-04
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		8e-04
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		8e-04
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		8e-04
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		9e-04

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/73 (58%), Positives = 56/73 (76%)
Query: 98  PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVK 157
           P  F CP+SLELM DPVIV++GQTYER+ I+KW+D G   CPK+++TL H  L PNY +K
Sbjct: 6   PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 158 ALIANWCELNNVK 170
           +LIA WCE N ++
Sbjct: 66  SLIALWCESNGIE 78

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 107/214 (50%), Gaps = 5/214 (2%)
Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 465
           V KLV+ L ST  +TQ+EA  +L  +A         I + G + +LV +L S+++++Q+ 
Sbjct: 4   VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 466 AVTALLNL-SXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK- 523
           A  AL N+ S               E L+ +L +   E ++ AA  L +++   D  IK 
Sbjct: 64  AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 123
Query: 524 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR-IVQAGAVKHLVDLMDPAA 582
           I  +G +  LV LL +     +K+AA AL N++   +   + IV AG V+ LV L+    
Sbjct: 124 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 183
Query: 583 GMVDKAVA-VLANLATIPDGRV-AIGQENGIPVL 614
             V K  A  LAN+A+ P   + AI    G+ VL
Sbjct: 184 SEVQKEAARALANIASGPTSAIKAIVDAGGVEVL 217

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 33/64 (51%)
Query: 97  IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 156
           IP   C  +S ELM +P I  SG TY+R  I++ +       P TR  L    LIPN  +
Sbjct: 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 264
Query: 157 KALI 160
           K +I
Sbjct: 265 KEVI 268

>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 33/64 (51%)
Query: 97  IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 156
           IP   C  +S ELM +P I  SG TY+R  I++ +       P TR  L    LIPN  +
Sbjct: 2   IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 61
Query: 157 KALI 160
           K +I
Sbjct: 62  KEVI 65

>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex Length = 80

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 97  IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 156
           IP   C  +S ELM +P I  SG TY+R  I++ +       P TR  L    LIPN  +
Sbjct: 10  IPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAM 69
Query: 157 KALIANWCELN 167
           K +I  + + N
Sbjct: 70  KEVIDAFIQEN 80

>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 12/145 (8%)
Query: 30  KVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQS 89
           ++++   L +    LI A    +L +  +Q++ +     + +M S     HD+ +M    
Sbjct: 34  RISQENELHAYLSKLILAEKERELDDRVKQSDDSQNGGDISKMKS----KHDKYLM-DMD 88
Query: 90  QICSPV-------PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTR 142
           ++ S V        IP   C  +S ELM +P I  SG TY+R  I++ +       P TR
Sbjct: 89  ELFSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTR 148
Query: 143 QTLAHTTLIPNYTVKALIANWCELN 167
             L    LIPN  +K +I  + + N
Sbjct: 149 SPLTQDQLIPNLAMKEVIDAFIQEN 173

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 565 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVAIGQE-NGIPVLVEVVEL 620
           ++QAG V  LV+ M    P    ++ A A L N+A+    +  +  + + +P+ ++++  
Sbjct: 126 VIQAGVVPRLVEFMRENQPEMLQLEAAWA-LTNIASGTSAQTKVVVDADAVPLFIQLLYT 184
Query: 621 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 676
           GS   KE A  AL  +  +S+ +   VLQ  A+ P++ L  S  P     A   LS
Sbjct: 185 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 240

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 565 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVAIGQE-NGIPVLVEVVEL 620
           ++QAG V  LV+ M    P    ++ A A L N+A+    +  +  + + +P+ ++++  
Sbjct: 39  VIQAGVVPRLVEFMRENQPEMLQLEAAWA-LTNIASGTSAQTKVVVDADAVPLFIQLLYT 97
Query: 621 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 676
           GS   KE A  AL  +  +S+ +   VLQ  A+ P++ L  S  P     A   LS
Sbjct: 98  GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 153

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 565 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVAIGQE-NGIPVLVEVVEL 620
           ++QAG V  LV+ M    P    ++ A A L N+A+    +  +  + + +P+ ++++  
Sbjct: 39  VIQAGVVPRLVEFMRENQPEMLQLEAAWA-LTNIASGTSAQTKVVVDADAVPLFIQLLYT 97
Query: 621 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 676
           GS   KE A  AL  +  +S+ +   VLQ  A+ P++ L  S  P     A   LS
Sbjct: 98  GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 153

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 565 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVAIGQE-NGIPVLVEVVEL 620
           ++QAG V  LV+ M    P    ++ A A L N+A+    +  +  + + +P+ ++++  
Sbjct: 38  VIQAGVVPRLVEFMRENQPEMLQLEAAWA-LTNIASGTSAQTKVVVDADAVPLFIQLLYT 96
Query: 621 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 676
           GS   KE A  AL  +  +S+ +   VLQ  A+ P++ L  S  P     A   LS
Sbjct: 97  GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 152

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 565 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVAIGQE-NGIPVLVEVVEL 620
           ++QAG V  LV+ M    P    ++ A A L N+A+    +  +  + + +P+ ++++  
Sbjct: 40  VIQAGVVPRLVEFMRENQPEMLQLEAAWA-LTNIASGTSAQTKVVVDADAVPLFIQLLYT 98
Query: 621 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 676
           GS   KE A  AL  +  +S+ +   VLQ  A+ P++ L  S  P     A   LS
Sbjct: 99  GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 154

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 565 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVAIGQE-NGIPVLVEVVEL 620
           ++QAG V  LV+ M    P    ++ A A L N+A+    +  +  + + +P+ ++++  
Sbjct: 38  VIQAGVVPRLVEFMRENQPEMLQLEAAWA-LTNIASGTSAQTKVVVDADAVPLFIQLLYT 96
Query: 621 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 676
           GS   KE A  AL  +  +S+ +   VLQ  A+ P++ L  S  P     A   LS
Sbjct: 97  GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 152

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 565 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVAIGQE-NGIPVLVEVVEL 620
           ++QAG V  LV+ M    P    ++ A A L N+A+    +  +  + + +P+ ++++  
Sbjct: 40  VIQAGVVPRLVEFMRENQPEMLQLEAAWA-LTNIASGTSAQTKVVVDADAVPLFIQLLYT 98
Query: 621 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 676
           GS   KE A  AL  +  +S+ +   VLQ  A+ P++ L  S  P     A   LS
Sbjct: 99  GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 154

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	689
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	7e-73
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-39
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-26
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-09
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-70
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-64
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-57
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-57
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-38
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-29
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-67
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-62
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-56
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-52
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-44
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-36
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-29
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-25
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-65
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-44
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-40
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-40
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-30
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-65
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-56
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-52
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-31
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-26
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-61
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-44
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-38
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-36
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-29
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-24
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-60
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-41
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-26
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	6e-09
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	8e-57
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	7e-41
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-31
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-26
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-47
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-32
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-23
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-22
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	9e-44
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-41
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-40
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-26
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	9e-43
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-22
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-22
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-20
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-05
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-42
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-23
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-22
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-05
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	5e-40
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	2e-38
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-36
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-33
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-19
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-13
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-05
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	6e-36
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	4e-11
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	6e-08
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	9e-29
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	1e-28
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	2e-25
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	9e-25
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-22
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-18
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-21
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	1e-15
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	1e-15
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	1e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	8e-12
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	5e-11
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	4e-11
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-08
3grl_A	651	General vesicular transport factor P115; vesicle t	4e-09
3grl_A	651	General vesicular transport factor P115; vesicle t	6e-05
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	2e-08
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	2e-08
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	3e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-06
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	4e-07
1z6u_A	150	NP95-like ring finger protein isoform B; structura	3e-06
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	3e-06
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	3e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	5e-06
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	7e-06
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	1e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-04
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	3e-04
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	4e-04
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	4e-04
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	5e-04
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	6e-04

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  235 bits (601), Expect = 7e-73
 Identities = 52/236 (22%), Positives = 117/236 (49%), Gaps = 5/236 (2%)

Query: 409 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVT 468
           + + L S  +  Q  AT +   +     +    + + GA+  LV +L S   +I + A+ 
Sbjct: 17  MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76

Query: 469 ALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK-IGR 526
           AL N++   +    A+ +A A+  L+ +L + + +  + A   L +++   + +I+ +  
Sbjct: 77  ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136

Query: 527 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM-DPAAGM 584
           +GA+  LV LL +   +  ++A  AL N++    E    ++ AGA+  LV L+  P   +
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 196

Query: 585 VDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 639
           + +A+  L+N+A+   + + A+ +   +  L ++    + + ++ A  AL +L ++
Sbjct: 197 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  143 bits (364), Expect = 4e-39
 Identities = 42/203 (20%), Positives = 92/203 (45%), Gaps = 4/203 (1%)

Query: 479 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSL-SVIEDNKIKIGRSGAIGPLVDLL 537
           +     + + +  +   L +   + + +A      + S   +    +  +GA+  LV LL
Sbjct: 4   SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63

Query: 538 GNGTPRGKKDAATALFNLSIYHENKAR-IVQAGAVKHLVDLMD-PAAGMVDKAVAVLANL 595
            +   +  ++A  AL N++     + + ++ AGA+  LV L+  P   ++ +A+  L+N+
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123

Query: 596 ATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVP 654
           A+   +   A+     +P LV+++   + +  + A  AL  + +  +     V+  GA+P
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 183

Query: 655 PLVALSQSGTPRAKEKAQALLSY 677
            LV L  S   +  ++A   LS 
Sbjct: 184 ALVQLLSSPNEQILQEALWALSN 206

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  106 bits (268), Expect = 4e-26
 Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 3/165 (1%)

Query: 517 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLV 575
           +  +         +  +   L +   + +  A      +     E    ++ AGA+  LV
Sbjct: 1   MRGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALV 60

Query: 576 DLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAAL 633
            L+  P   ++ +A+  L+N+A+  +    A+     +P LV+++   + +  + A  AL
Sbjct: 61  QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120

Query: 634 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 678
             + +  +     V+  GA+P LV L  S   +  ++A   LS  
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 18/71 (25%), Positives = 30/71 (42%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 465
           +  LV+ L S +    +EA   L  +A    + +  +   GA+  L  +      KIQ+ 
Sbjct: 182 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 241

Query: 466 AVTALLNLSIN 476
           A  AL  L  +
Sbjct: 242 AQEALEKLQSH 252

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  237 bits (606), Expect = 3e-70
 Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 8/275 (2%)

Query: 406 VRKLVEDLKSTS-LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 464
           V  +V  +++T+ ++T R     L  L+ H  +  + I   G I  LV ML S    +  
Sbjct: 61  VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 119

Query: 465 NAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKI 522
            A+T L NL +  +  K A+  A  ++ ++ +L   + +        L  L+   +++K+
Sbjct: 120 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179

Query: 523 KIGRSGAIGPLVDLLGNGTPRGKKDAAT-ALFNLSIYHENKARIVQAGAVKHLVDLM-DP 580
            I  SG    LV+++   T        +  L  LS+   NK  IV+AG ++ L   + DP
Sbjct: 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 239

Query: 581 AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 640
           +  +V   +  L NL+     +  +  E  +  LV+++          AA  L  L  N+
Sbjct: 240 SQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297

Query: 641 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 675
            +   MV Q G +  LV        R      A+ 
Sbjct: 298 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 332

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  221 bits (564), Expect = 3e-64
 Identities = 55/276 (19%), Positives = 107/276 (38%), Gaps = 8/276 (2%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQE 464
           + +L + L         +A   +  L+K       ++ +   ++ +V  + ++++ +   
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78

Query: 465 NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIK 523
                L NLS +     AI  +  I  L+ +L +        A  TL +L +  E  K+ 
Sbjct: 79  CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138

Query: 524 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLMDP-- 580
           +  +G +  +V LL     +        L  L+  + E+K  I+ +G  + LV++M    
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198

Query: 581 AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 640
              ++     VL  L+     + AI +  G+  L   +   S R  +N    L  L   +
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258

Query: 641 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 676
           ++       EG +  LV L  S        A  +LS
Sbjct: 259 TK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILS 291

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  201 bits (514), Expect = 3e-57
 Identities = 66/280 (23%), Positives = 123/280 (43%), Gaps = 11/280 (3%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQE 464
           ++K+V  L  T++      T  L++LA  N +++++I   G    LV+++ + +  K+  
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 204

Query: 465 NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 524
                L  LS+  +NK AI  A  ++ L   L   S    +N   TL +LS  +    + 
Sbjct: 205 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQE 262

Query: 525 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM---DP 580
           G  G +G LV LLG+        AA  L NL+  + +NK  + Q G ++ LV  +     
Sbjct: 263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322

Query: 581 AAGMVDKAVAVLANLATIPD----GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 636
              + + A+  L +L +        + A+    G+PV+V+++   S      A   L++ 
Sbjct: 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 382

Query: 637 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 676
                   + + ++GA+P LV L        + +     +
Sbjct: 383 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 422

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  201 bits (514), Expect = 4e-57
 Identities = 64/303 (21%), Positives = 101/303 (33%), Gaps = 35/303 (11%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 465
           ++ L   L   S    +     LR L+             G +  LV +L S +  +   
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAA---TKQEGMEGLLGTLVQLLGSDDINVVTC 285

Query: 466 AVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSP--EARENAAATLFSLSVI----E 518
           A   L NL+  N  NK  +     IE L+  +       +  E A   L  L+      E
Sbjct: 286 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 345

Query: 519 DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF-NLSIYHENKARIVQAGAVKHLVDL 577
             +  +     +  +V LL   +      A   L  NL++   N A + + GA+  LV L
Sbjct: 346 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 405

Query: 578 M-----------------------DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 614
           +                            +V+     L  LA     R+ I   N IP+ 
Sbjct: 406 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 465

Query: 615 VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQAL 674
           V+++       +  AA  L +L  +       +  EGA  PL  L  S        A A+
Sbjct: 466 VQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 524

Query: 675 LSY 677
           L  
Sbjct: 525 LFR 527

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  148 bits (376), Expect = 2e-38
 Identities = 47/215 (21%), Positives = 84/215 (39%), Gaps = 7/215 (3%)

Query: 469 ALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS- 527
           A++NL IN  +  A     AI  L  +L          AA  +  LS  E ++  I RS 
Sbjct: 1   AVVNL-INYQDD-AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58

Query: 528 GAIGPLVDLLGNGT-PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMV 585
             +  +V  + N       +  A  L NLS + E    I ++G +  LV ++  P   ++
Sbjct: 59  QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 118

Query: 586 DKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC 644
             A+  L NL    +G ++A+    G+  +V ++   + +        L  L   +    
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178

Query: 645 SMVLQEGAVPPLVALSQSGTPRA-KEKAQALLSYF 678
            ++L  G    LV + ++ T          +L   
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  121 bits (304), Expect = 5e-29
 Identities = 39/170 (22%), Positives = 59/170 (34%), Gaps = 22/170 (12%)

Query: 409 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQ----- 463
           +V+ L   S     +AT  L         N   +   GAI  LV +L  +    Q     
Sbjct: 360 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 419

Query: 464 -----------------ENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEAREN 506
                            E    AL  L+ + +N+  I   N I   + +L +     +  
Sbjct: 420 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRV 479

Query: 507 AAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 556
           AA  L  L+  ++    I   GA  PL +LL +        AA  LF +S
Sbjct: 480 AAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  230 bits (589), Expect = 8e-67
 Identities = 67/275 (24%), Positives = 116/275 (42%), Gaps = 8/275 (2%)

Query: 406 VRKLVEDLKSTS-LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 464
           V  +V  +++T+ ++T R     L  L+ H  +  + I   G I  LV ML S    +  
Sbjct: 58  VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 116

Query: 465 NAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKI 522
            A+T L NL ++ +  K A+  A  ++ ++ +L   + +        L  L+   +++K+
Sbjct: 117 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 176

Query: 523 KIGRSGAIGPLVDLLGNGTPRGKK-DAATALFNLSIYHENKARIVQAGAVKHLVDLM-DP 580
            I  SG    LV+++   T        +  L  LS+   NK  IV+AG ++ L   + DP
Sbjct: 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 236

Query: 581 AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 640
           +  +V   +  L NL+         G E  +  LV+++          AA  L  L  N+
Sbjct: 237 SQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294

Query: 641 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 675
            +   MV Q G +  LV        R      A+ 
Sbjct: 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 329

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  218 bits (557), Expect = 2e-62
 Identities = 55/276 (19%), Positives = 107/276 (38%), Gaps = 8/276 (2%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQE 464
           + +L + L         +A   +  L+K       ++ +   ++ +V  + ++++ +   
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75

Query: 465 NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIK 523
                L NLS +     AI  +  I  L+ +L +        A  TL +L +  E  K+ 
Sbjct: 76  CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135

Query: 524 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLMD--P 580
           +  +G +  +V LL     +        L  L+  + E+K  I+ +G  + LV++M    
Sbjct: 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195

Query: 581 AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 640
              ++     VL  L+     + AI +  G+  L   +   S R  +N    L  L   +
Sbjct: 196 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 255

Query: 641 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 676
           ++       EG +  LV L  S        A  +LS
Sbjct: 256 TK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILS 288

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  202 bits (516), Expect = 1e-56
 Identities = 66/282 (23%), Positives = 122/282 (43%), Gaps = 11/282 (3%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE-TKIQE 464
           ++K+V  L  T++      T  L++LA  N +++++I   G    LV+++ +    K+  
Sbjct: 142 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 201

Query: 465 NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 524
                L  LS+  +NK AI  A  ++ L   L   S    +N   TL +LS  +    + 
Sbjct: 202 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQE 259

Query: 525 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM---DP 580
           G  G +G LV LLG+        AA  L NL+  + +NK  + Q G ++ LV  +     
Sbjct: 260 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 319

Query: 581 AAGMVDKAVAVLANLATIPD----GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 636
              + + A+  L +L +        + A+    G+PV+V+++   S      A   L++ 
Sbjct: 320 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 379

Query: 637 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 678
                   + + ++GA+P LV L        + +     +  
Sbjct: 380 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 421

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  190 bits (484), Expect = 3e-52
 Identities = 63/317 (19%), Positives = 110/317 (34%), Gaps = 36/317 (11%)

Query: 390 TSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAIN 449
           +  A  +  + G+   +  LV+ L S  ++    A   L  L  +N  N+M++   G I 
Sbjct: 252 SDAATKQEGMEGL---LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 308

Query: 450 ILVDML--HSSETKIQENAVTALLNLSI----NDNNKSAIANANAIEPLIHVLQTGSPEA 503
            LV  +        I E A+ AL +L+      +  ++A+     +  ++ +L   S   
Sbjct: 309 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 368

Query: 504 RENAAATLFS-LSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAAT------------ 550
              A   L   L++   N   +   GAI  LV LL       ++  +             
Sbjct: 369 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 428

Query: 551 ----------ALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP 599
                     AL  L+    N+  I     +   V L+  P   +   A  VL  LA   
Sbjct: 429 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 488

Query: 600 DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 659
           +   AI  E     L E++   +      AAA L ++  +         +  +V    +L
Sbjct: 489 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP---QDYKKRLSVELTSSL 545

Query: 660 SQSGTPRAKEKAQALLS 676
            ++      E A   L 
Sbjct: 546 FRTEPMAWNETADLGLD 562

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  168 bits (427), Expect = 1e-44
 Identities = 46/246 (18%), Positives = 93/246 (37%), Gaps = 5/246 (2%)

Query: 437 DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND-NNKSAIANANAIEPLIHV 495
                     AI  L  +L+  +  +   A   +  LS  + +  + + +   +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 496 LQTGS-PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 554
           +Q  +  E     A TL +LS   +  + I +SG I  LV +LG+        A T L N
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 555 LSIYHEN-KARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATI-PDGRVAIGQENGI 611
           L ++ E  K  +  AG ++ +V L++      +      L  LA    + ++ I    G 
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 612 PVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKA 671
             LV ++   +        + +L++ +  S     +++ G +  L       + R  +  
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 244

Query: 672 QALLSY 677
              L  
Sbjct: 245 LWTLRN 250

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  142 bits (360), Expect = 7e-36
 Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 7/210 (3%)

Query: 472 NLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS-GAI 530
           NL IN  +  A     AI  L  +L          AA  +  LS  E ++  I RS   +
Sbjct: 1   NL-INYQDD-AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 58

Query: 531 GPLVDLLGNGT-PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKA 588
             +V  + N       +  A  L NLS + E    I ++G +  LV ++  P   ++  A
Sbjct: 59  SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYA 118

Query: 589 VAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMV 647
           +  L NL    +G ++A+    G+  +V ++   + +        L  L   +     ++
Sbjct: 119 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178

Query: 648 LQEGAVPPLVALSQSGTPRA-KEKAQALLS 676
           L  G    LV + ++ T          +L 
Sbjct: 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLK 208

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  122 bits (308), Expect = 2e-29
 Identities = 44/214 (20%), Positives = 71/214 (33%), Gaps = 25/214 (11%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQ-- 463
           +  +V+ L   S     +AT  L         N   +   GAI  LV +L  +    Q  
Sbjct: 354 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 413

Query: 464 --------------------ENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEA 503
                               E    AL  L+ + +N+  I   N I   + +L +     
Sbjct: 414 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENI 473

Query: 504 RENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKA 563
           +  AA  L  L+  ++    I   GA  PL +LL +        AA  LF +S   +   
Sbjct: 474 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS--EDKPQ 531

Query: 564 RIVQAGAVKHLVDLMDPAAGMVDK-AVAVLANLA 596
              +  +V+    L        ++ A   L   A
Sbjct: 532 DYKKRLSVELTSSLFRTEPMAWNETADLGLDIGA 565

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  110 bits (276), Expect = 2e-25
 Identities = 37/178 (20%), Positives = 59/178 (33%), Gaps = 3/178 (1%)

Query: 383 FVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVI 442
            +PR+V       +           +          +     T  L +LA+    NR+VI
Sbjct: 395 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV-HNRIVI 453

Query: 443 ANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPE 502
                I + V +L+S    IQ  A   L  L+ +     AI    A  PL  +L + +  
Sbjct: 454 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEG 513

Query: 503 ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 560
               AAA LF +S  ED      +  ++     L         + A   L   +    
Sbjct: 514 VATYAAAVLFRMS--EDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEP 569

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  218 bits (557), Expect = 3e-65
 Identities = 63/308 (20%), Positives = 119/308 (38%), Gaps = 32/308 (10%)

Query: 396 RADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML 455
            A   G++    +    + +        A   L  L+    ++R  +   G +  + ++L
Sbjct: 28  EAHEPGMD----QDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIAELL 82

Query: 456 HSSET-----------KIQENAVTALLNLSIND-NNKSAI-ANANAIEPLIHVLQTGSPE 502
                            ++  A  AL NL+  D  NK+ + +    +  L+  L++ S +
Sbjct: 83  QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 142

Query: 503 ARENAAATLFSLSVIED--NKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATALFNLSIYH 559
            ++  A+ L +LS   D  +K  +   G++  L++           K   +AL+NLS + 
Sbjct: 143 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202

Query: 560 -ENKARIVQA-GAVKHLVDLMDPAA-----GMVDKAVAVLANL----ATIPDGRVAIGQE 608
            ENKA I    GA+  LV  +   +      +++    +L N+    AT  D R  + + 
Sbjct: 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 262

Query: 609 NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAK 668
           N +  L++ ++  S     NA   L  L   + +    +   GAV  L  L  S      
Sbjct: 263 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIA 322

Query: 669 EKAQALLS 676
             + A L 
Sbjct: 323 MGSAAALR 330

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  161 bits (409), Expect = 3e-44
 Identities = 49/272 (18%), Positives = 104/272 (38%), Gaps = 19/272 (6%)

Query: 402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNR-MVIANCGAINILVDMLHSSET 460
           ++             S+  +R A   L  L   ++ N+  + +  G +  LV  L S   
Sbjct: 82  LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 141

Query: 461 KIQENAVTALLNLSI--NDNNKSAIANANAIEPLIHVLQTGS-PEARENAAATLFSLSVI 517
            +Q+   + L NLS   + N+K  +    +++ L+            ++  + L++LS  
Sbjct: 142 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201

Query: 518 -EDNKIKIGR-SGAIGPLVDLLGNGTPRG----KKDAATALFNLSIY----HENKARIVQ 567
             +NK  I    GA+  LV  L   +        +     L N+S       +++  + +
Sbjct: 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 261

Query: 568 AGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARG 625
              ++ L+  +   +  +V  A   L NL+   P  + A+     + +L  ++       
Sbjct: 262 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMI 321

Query: 626 KENAAAALLQLCTNSS---RFCSMVLQEGAVP 654
              +AAAL  L  N     +  +++    ++P
Sbjct: 322 AMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  150 bits (380), Expect = 3e-40
 Identities = 51/242 (21%), Positives = 106/242 (43%), Gaps = 18/242 (7%)

Query: 389 STSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLA-KHNMDNRMVIANCGA 447
           +      +A L  ++  +R LV  LKS S D Q+   + LR L+ + +++++  +   G+
Sbjct: 112 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGS 171

Query: 448 INILVDML-HSSETKIQENAVTALLNLSI-NDNNKSAIANAN-AIEPLIHVL----QTGS 500
           +  L++      +    ++ ++AL NLS     NK+ I   + A+  L+  L    QT +
Sbjct: 172 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231

Query: 501 PEARENAAATLFSLSVI----EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 556
               E+    L ++S +    ED++  +  +  +  L+  L + +     +A   L+NLS
Sbjct: 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291

Query: 557 IYH-ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT----IPDGRVAIGQENG 610
             + +++  +   GAV  L +L+      +   + A L NL             +   + 
Sbjct: 292 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSS 351

Query: 611 IP 612
           +P
Sbjct: 352 LP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  149 bits (377), Expect = 8e-40
 Identities = 47/289 (16%), Positives = 101/289 (34%), Gaps = 31/289 (10%)

Query: 418 LDTQREATAELRLLAKH----NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNL 473
           +         L LL +             A+   ++   + + +        AV  L+ L
Sbjct: 1   MGHHHHHHM-LHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL 59

Query: 474 SINDNNKSAIANANAIEPLIHVLQTG-----------SPEARENAAATLFSLSVIED-NK 521
           S ++ ++ A+     ++ +  +LQ             S   R  A   L +L+  +  NK
Sbjct: 60  SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK 119

Query: 522 IKIGRS-GAIGPLVDLLGNGTPRGKKDAATALFNLSIYH--ENKARIVQAGAVKHLVDLM 578
             +    G +  LV  L + +   ++  A+ L NLS      +K  + + G+VK L++  
Sbjct: 120 ATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 179

Query: 579 DPA--AGMVDKAVAVLANLATI-PDGRVAIGQENG-IPVLVEVV----ELGSARGKENAA 630
                   +   ++ L NL+    + +  I   +G +  LV  +    +  +    E+  
Sbjct: 180 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 239

Query: 631 AAL---LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 676
             L     L   +     ++ +   +  L+   +S +      A   L 
Sbjct: 240 GILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 288

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  121 bits (304), Expect = 4e-30
 Identities = 39/224 (17%), Positives = 79/224 (35%), Gaps = 22/224 (9%)

Query: 476 NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVD 535
               +   A+   ++   + +          A   L  LS  E+++  +   G +  + +
Sbjct: 21  ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAE 80

Query: 536 LLGNGTPRGKKD-----------AATALFNLSIY-HENKARIVQ-AGAVKHLVDLMD-PA 581
           LL                     A  AL NL+     NKA +    G ++ LV  +   +
Sbjct: 81  LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 140

Query: 582 AGMVDKAVAVLANLATI--PDGRVAIGQENGIPVLVE-VVELGSARGKENAAAALLQLCT 638
             +     +VL NL+     + +  + +   +  L+E  +E+      ++  +AL  L  
Sbjct: 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200

Query: 639 NSSRFC-SMVLQEGAVPPLVAL----SQSGTPRAKEKAQALLSY 677
           + +     +   +GA+  LV      SQ+ T    E    +L  
Sbjct: 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 244

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  228 bits (582), Expect = 6e-65
 Identities = 66/275 (24%), Positives = 121/275 (44%), Gaps = 8/275 (2%)

Query: 406 VRKLVEDLKSTS-LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 464
           V  +V  +++T+ ++T R  +  L  L+ H+ +  + I   G I  LV+ML S    +  
Sbjct: 194 VSAIVRTMQNTNDVETARCTSGTLHNLS-HHREGLLAIFKSGGIPALVNMLGSPVDSVLF 252

Query: 465 NAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKI 522
           +A+T L NL ++ +  K A+  A  ++ ++ +L   + +        L  L+   +++K+
Sbjct: 253 HAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 312

Query: 523 KIGRSGAIGPLVDLLGNGTPRGKK-DAATALFNLSIYHENKARIVQAGAVKHLVDLM-DP 580
            I  SG    LV+++   T        +  L  LS+   NK  IV+AG ++ L   + DP
Sbjct: 313 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 372

Query: 581 AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 640
           +  +V   +  L NL+     +  +  E  +  LV+++          AA  L  L  N+
Sbjct: 373 SQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 430

Query: 641 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 675
            +   MV Q G +  LV        R      A+ 
Sbjct: 431 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 465

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  204 bits (519), Expect = 3e-56
 Identities = 66/281 (23%), Positives = 123/281 (43%), Gaps = 11/281 (3%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQE 464
           ++K+V  L  T++      T  L++LA  N +++++I   G    LV+++ + +  K+  
Sbjct: 278 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 337

Query: 465 NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 524
                L  LS+  +NK AI  A  ++ L   L   S    +N   TL +LS  +    + 
Sbjct: 338 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQE 395

Query: 525 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM---DP 580
           G  G +G LV LLG+        AA  L NL+  + +NK  + Q G ++ LV  +     
Sbjct: 396 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 455

Query: 581 AAGMVDKAVAVLANLATIPDG----RVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 636
              + + A+  L +L +        + A+    G+PV+V+++   S      A   L++ 
Sbjct: 456 REDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 515

Query: 637 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 677
                   + + ++GA+P LV L        + +     + 
Sbjct: 516 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 556

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  192 bits (489), Expect = 3e-52
 Identities = 64/303 (21%), Positives = 102/303 (33%), Gaps = 35/303 (11%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 465
           ++ L   L   S    +     LR L+             G +  LV +L S +  +   
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAA---TKQEGMEGLLGTLVQLLGSDDINVVTC 418

Query: 466 AVTALLNLSINDN-NKSAIANANAIEPLIHVLQTGS--PEARENAAATLFSLSVIEDNKI 522
           A   L NL+ N+  NK  +     IE L+  +       +  E A   L  L+    +  
Sbjct: 419 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAE 478

Query: 523 K----IGRSGAIGPLVDLLGNGTPRGKKDAATALF-NLSIYHENKARIVQAGAVKHLVDL 577
                +     +  +V LL   +      A   L  NL++   N A + + GA+  LV L
Sbjct: 479 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 538

Query: 578 MDPA-----------------------AGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 614
           +  A                         +V+     L  LA     R+ I   N IP+ 
Sbjct: 539 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLF 598

Query: 615 VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQAL 674
           V+++       +  AA  L +L  +       +  EGA  PL  L  S        A A+
Sbjct: 599 VQLLYSPIENIQRVAAGVLCELAQDK-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 657

Query: 675 LSY 677
           L  
Sbjct: 658 LFR 660

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  128 bits (324), Expect = 4e-31
 Identities = 49/257 (19%), Positives = 81/257 (31%), Gaps = 31/257 (12%)

Query: 406 VRKLVEDL--KSTSLDTQREATAELRLLAKHNMDNRMV---IANCGAINILVDMLHSSET 460
           +  LV  +       D    A   LR L   + D  M    +     + ++V +LH    
Sbjct: 443 IEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSH 502

Query: 461 KIQENAVTALL-NLSINDNNKSAIANANAIEPLIHVLQTGSPEAR--------------- 504
                A   L+ NL++   N + +    AI  L+ +L     + +               
Sbjct: 503 WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 562

Query: 505 -------ENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 557
                  E     L  L+    N+I I     I   V LL +     ++ AA  L  L+ 
Sbjct: 563 VRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 622

Query: 558 YHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVE 616
             E    I   GA   L +L+     G+   A AVL  ++   D      +   + +   
Sbjct: 623 DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE--DKPQDYKKRLSVELTSS 680

Query: 617 VVELGSARGKENAAAAL 633
           +         E     L
Sbjct: 681 LFRTEPMTWNETGDLGL 697

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  113 bits (284), Expect = 3e-26
 Identities = 44/282 (15%), Positives = 76/282 (26%), Gaps = 14/282 (4%)

Query: 400 SGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE 459
           SGI +        L         +   ++    +   +          I+        + 
Sbjct: 33  SGIHSGATTTAPSLSGKGNPEDDDVDNQVLYEWEQGFNQSFNQEQVADID-----GQYAM 87

Query: 460 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED 519
           T+ Q                  +    +A    +  L   S   +            I  
Sbjct: 88  TRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNL------INY 141

Query: 520 NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLM 578
                  + AI  L  LL +        AA  +  LS    ++  I++    V  +V  M
Sbjct: 142 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 201

Query: 579 DPA--AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 636
                          L NL+   +G +AI +  GIP LV ++         +A   L  L
Sbjct: 202 QNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNL 261

Query: 637 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 678
             +       V   G +  +VAL      +        L   
Sbjct: 262 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  210 bits (537), Expect = 3e-61
 Identities = 62/308 (20%), Positives = 117/308 (37%), Gaps = 28/308 (9%)

Query: 396 RADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML 455
                  E  + +    + +        A   L  L+    ++R  +   G +  + ++L
Sbjct: 140 WEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIAELL 198

Query: 456 HSSET-----------KIQENAVTALLNLSIND-NNKSAI-ANANAIEPLIHVLQTGSPE 502
                            ++  A  AL NL+  D  NK+ + +    +  L+  L++ S +
Sbjct: 199 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 258

Query: 503 ARENAAATLFSLSVIED--NKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATALFNLSIY- 558
            ++  A+ L +LS   D  +K  +   G++  L++           K   +AL+NLS + 
Sbjct: 259 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 318

Query: 559 HENKARIVQA-GAVKHLVDLMDPAA-----GMVDKAVAVLANL----ATIPDGRVAIGQE 608
            ENKA I    GA+  LV  +   +      +++    +L N+    AT  D R  + + 
Sbjct: 319 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378

Query: 609 NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAK 668
           N +  L++ ++  S     NA   L  L   + +    +   GAV  L  L  S      
Sbjct: 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIA 438

Query: 669 EKAQALLS 676
             + A L 
Sbjct: 439 MGSAAALR 446

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  165 bits (419), Expect = 1e-44
 Identities = 48/256 (18%), Positives = 98/256 (38%), Gaps = 16/256 (6%)

Query: 402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNR-MVIANCGAINILVDMLHSSET 460
           ++             S+  +R A   L  L   ++ N+  + +  G +  LV  L S   
Sbjct: 198 LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 257

Query: 461 KIQENAVTALLNLSI--NDNNKSAIANANAIEPLIHVL-QTGSPEARENAAATLFSLSVI 517
            +Q+   + L NLS   + N+K  +    +++ L+    +       ++  + L++LS  
Sbjct: 258 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 317

Query: 518 -EDNKIKIGR-SGAIGPLVDLLGNGTPRG----KKDAATALFNLSIY----HENKARIVQ 567
             +NK  I    GA+  LV  L   +        +     L N+S       +++  + +
Sbjct: 318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 377

Query: 568 AGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARG 625
              ++ L+  +   +  +V  A   L NL+   P  + A+     + +L  ++       
Sbjct: 378 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMI 437

Query: 626 KENAAAALLQLCTNSS 641
              +AAAL  L  N  
Sbjct: 438 AMGSAAALRNLMANRP 453

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  147 bits (372), Expect = 2e-38
 Identities = 49/324 (15%), Positives = 108/324 (33%), Gaps = 50/324 (15%)

Query: 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL----------- 451
                 ++      S + +  A+A L  +     D++        +++L           
Sbjct: 81  GNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCW 140

Query: 452 -------------VDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQT 498
                         + + +        AV  L+ LS ++ ++ A+     ++ +  +LQ 
Sbjct: 141 EWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQV 200

Query: 499 G-----------SPEARENAAATLFSLSVI-EDNKIKIGRS-GAIGPLVDLLGNGTPRGK 545
                       S   R  A   L +L+     NK  +    G +  LV  L + +   +
Sbjct: 201 DCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ 260

Query: 546 KDAATALFNLSIYH--ENKARIVQAGAVKHLVDLMDPA--AGMVDKAVAVLANLATI-PD 600
           +  A+ L NLS      +K  + + G+VK L++          +   ++ L NL+    +
Sbjct: 261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 320

Query: 601 GRVAIGQENG-IPVLVEVV----ELGSARGKENAAAAL---LQLCTNSSRFCSMVLQEGA 652
            +  I   +G +  LV  +    +  +    E+    L     L   +     ++ +   
Sbjct: 321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 380

Query: 653 VPPLVALSQSGTPRAKEKAQALLS 676
           +  L+   +S +      A   L 
Sbjct: 381 LQTLLQHLKSHSLTIVSNACGTLW 404

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  140 bits (353), Expect = 9e-36
 Identities = 54/346 (15%), Positives = 112/346 (32%), Gaps = 60/346 (17%)

Query: 391 SGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINI 450
                    S + T+V  +   L       + + +  L  ++  + D+ + +   G + +
Sbjct: 16  PRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMS-SSQDSCISMRQSGCLPL 74

Query: 451 LVDMLHSSE------------TKIQENAVTALLNLSINDNNKSAIANANAIEPL------ 492
           L+ +LH ++             + +  A  AL N+  +  +         +  L      
Sbjct: 75  LIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRA 134

Query: 493 -------------------IHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPL 533
                               + +          A   L  LS  E+++  +   G +  +
Sbjct: 135 YCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAI 194

Query: 534 VDLLGNGTPRGKKD-----------AATALFNLSIYH-ENKARIVQ-AGAVKHLVDLMD- 579
            +LL                     A  AL NL+     NKA +    G ++ LV  +  
Sbjct: 195 AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS 254

Query: 580 PAAGMVDKAVAVLANLATIPDG--RVAIGQENGIPVLVEVV-ELGSARGKENAAAALLQL 636
            +  +     +VL NL+   D   +  + +   +  L+E   E+      ++  +AL  L
Sbjct: 255 ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL 314

Query: 637 CTNSSRFC-SMVLQEGAVPPLVAL----SQSGTPRAKEKAQALLSY 677
             + +     +   +GA+  LV      SQ+ T    E    +L  
Sbjct: 315 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 360

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  120 bits (302), Expect = 3e-29
 Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 11/170 (6%)

Query: 406 VRKLVEDL-KSTSLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDML----HSSE 459
           V+ L+E   +     T +   + L  L+ H  +N+  I    GA+  LV  L     ++ 
Sbjct: 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 347

Query: 460 TKIQENAVTALLNLSI----NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLS 515
             I E+    L N+S     N++++  +   N ++ L+  L++ S     NA  TL++LS
Sbjct: 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407

Query: 516 V-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR 564
                ++  +   GA+  L +L+ +        +A AL NL      K +
Sbjct: 408 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  106 bits (265), Expect = 2e-24
 Identities = 40/289 (13%), Positives = 90/289 (31%), Gaps = 53/289 (18%)

Query: 450 ILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ------------ 497
           ++  +L    T  +++    LL +S + ++  ++  +  +  LI +L             
Sbjct: 33  MVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNS 92

Query: 498 TGSPEARENAAATLFSLSVIEDN-------------------------KIKIGRSGAIGP 532
            GS EAR  A+A L ++   + +                         + +      +  
Sbjct: 93  RGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQ 152

Query: 533 LVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM------------DP 580
             + +          A   L  LS   E++  + + G ++ + +L+              
Sbjct: 153 DKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHY 212

Query: 581 AAGMVDKAVAVLANLATIPDG--RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 638
           +  +   A   L NL              +  +  LV  ++  S   ++  A+ L  L  
Sbjct: 213 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW 272

Query: 639 NSSRFCSMVLQE-GAVPPLV-ALSQSGTPRAKEKAQALLSYFRNQRHGN 685
            +       L+E G+V  L+    +       +   + L         N
Sbjct: 273 RADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 321

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  200 bits (511), Expect = 2e-60
 Identities = 42/196 (21%), Positives = 91/196 (46%), Gaps = 4/196 (2%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 465
           + ++V+ L S      + A  +L  +A    +    + + GA+  LV +L S   +I + 
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73

Query: 466 AVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIK 523
           A+ AL N++   +    A+ +A A+  L+ +L + + +  + A   L +++    +    
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133

Query: 524 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR-IVQAGAVKHLVDLM-DPA 581
           +  +GA+  LV LL +   +  ++A  AL N++     + + + +AGA++ L  L     
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193

Query: 582 AGMVDKAVAVLANLAT 597
             +  +A   L  L +
Sbjct: 194 EKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  149 bits (378), Expect = 2e-41
 Identities = 41/207 (19%), Positives = 104/207 (50%), Gaps = 5/207 (2%)

Query: 438 NRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVL 496
           +     +   +  +V  L+S + +  ++A+  L  ++   +    A+ +A A+  L+ +L
Sbjct: 4   SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL 63

Query: 497 QTGSPEARENAAATLFSLSVIEDNKIK-IGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 555
            + + +  + A   L +++   + +I+ +  +GA+  LV LL +   +  ++A  AL N+
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123

Query: 556 S-IYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIP 612
           +   +E    ++ AGA+  LV L+  P   ++ +A+  L+N+A+   + + A+ +   + 
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183

Query: 613 VLVEVVELGSARGKENAAAALLQLCTN 639
            L ++    + + ++ A  AL +L ++
Sbjct: 184 KLEQLQSHENEKIQKEAQEALEKLQSH 210

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  106 bits (268), Expect = 1e-26
 Identities = 32/158 (20%), Positives = 69/158 (43%), Gaps = 3/158 (1%)

Query: 517 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLV 575
           +  +         +  +V  L +   +  + A   L  ++    E    ++ AGA+  LV
Sbjct: 1   MRGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALV 60

Query: 576 DLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAAL 633
            L+  P   ++ +A+  L+N+A+  +    A+     +P LV+++   + +  + A  AL
Sbjct: 61  QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120

Query: 634 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKA 671
             + +  +     V+  GA+P LV L  S   +  ++A
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 18/71 (25%), Positives = 30/71 (42%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 465
           +  LV+ L S +    +EA   L  +A    + +  +   GA+  L  +      KIQ+ 
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 199

Query: 466 AVTALLNLSIN 476
           A  AL  L  +
Sbjct: 200 AQEALEKLQSH 210

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  198 bits (506), Expect = 8e-57
 Identities = 59/278 (21%), Positives = 115/278 (41%), Gaps = 7/278 (2%)

Query: 406 VRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 464
           V + VE LK   +   Q E+   L  +A  N     ++   GA+ I +++L S    +QE
Sbjct: 66  VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQE 125

Query: 465 NAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSP-EARENAAATLFSLSVIEDNKI 522
            AV AL N++  +   +  + + N + PL+ +    +      NA   L +L   +    
Sbjct: 126 QAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185

Query: 523 KIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-D 579
           +  + S  +  L  LL         DA  AL  LS   ++    ++ AG  + LV+L+  
Sbjct: 186 EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH 245

Query: 580 PAAGMVDKAVAVLANLATIPD-GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 638
               +V  A+  + N+ T  D     I   + +  L+ ++       K+ A   +  +  
Sbjct: 246 NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA 305

Query: 639 NSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 676
            +      V+     P L+++ Q+   R +++A   ++
Sbjct: 306 GNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAIT 343

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  154 bits (390), Expect = 7e-41
 Identities = 57/279 (20%), Positives = 109/279 (39%), Gaps = 7/279 (2%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQE 464
           V   +E L S   D Q +A   L  +A  +   R  + +C  +  L+ +    +   +  
Sbjct: 109 VPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTR 168

Query: 465 NAVTALLNLSINDNNKSAIA-NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 523
           NAV AL NL    +     A  +  +  L  +L     +   +A   L  LS   ++KI+
Sbjct: 169 NAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQ 228

Query: 524 -IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLMD-P 580
            +  +G    LV+LL +   +    A  A+ N+          I+   A++ L+ L+  P
Sbjct: 229 AVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP 288

Query: 581 AAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 639
              +  +A   ++N+          +   N  P L+ +++    R ++ AA A+    + 
Sbjct: 289 KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348

Query: 640 SSR-FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 677
            S      +++ G + PL  L      +  + A   L  
Sbjct: 349 GSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLEN 387

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  126 bits (319), Expect = 2e-31
 Identities = 47/235 (20%), Positives = 99/235 (42%), Gaps = 5/235 (2%)

Query: 392 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 451
           G     + + +   +  L   L  +  D   +A   L  L+    D    + + G    L
Sbjct: 180 GKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239

Query: 452 VDMLHSSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAAT 510
           V++L  ++ K+   A+ A+ N+ + +D     I N +A++ L+H+L +     ++ A  T
Sbjct: 240 VELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299

Query: 511 LFSLSVIEDNKIK-IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH--ENKARIVQ 567
           + +++     +I+ +  +     L+ +L     R +K+AA A+ N +     E    +V+
Sbjct: 300 ISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVE 359

Query: 568 AGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG 621
            G +K L DL+    + +V  A+  L N+  + +           P    + E  
Sbjct: 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAY 414

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  112 bits (281), Expect = 2e-26
 Identities = 47/217 (21%), Positives = 76/217 (35%), Gaps = 8/217 (3%)

Query: 469 ALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN---KIKIG 525
           A+       NN            +I ++ + SPE + +A      L   E N      I 
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61

Query: 526 RSGAIGPLVDLLGNGT-PRGKKDAATALFNL-SIYHENKARIVQAGAVKHLVDLM-DPAA 582
             G +   V+ L        + ++A  L N+ S        ++QAGAV   ++L+     
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121

Query: 583 GMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTNS 640
            + ++AV  L N+A      R  +   N +P L+++  +        NA  AL  LC   
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181

Query: 641 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 677
           S           +  L  L           A   LSY
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSY 218

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  174 bits (443), Expect = 1e-47
 Identities = 58/282 (20%), Positives = 106/282 (37%), Gaps = 11/282 (3%)

Query: 406 VRKLVEDL-KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 464
           + K V  L K+     Q E+   L  +A    +    + + GAI   + +L S    I E
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161

Query: 465 NAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPE-----ARENAAATLFSLSVIE 518
            AV AL N++      +  +    AI+PL+ +L              N   TL +L   +
Sbjct: 162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221

Query: 519 DNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVD 576
           +    +      +  LV LL +  P    D+  A+  L+    E    +V+ G V  LV 
Sbjct: 222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 281

Query: 577 LM-DPAAGMVDKAVAVLANLATIPD-GRVAIGQENGIPVLVEVVELGSARGKENAAAALL 634
           L+      +V  A+  + N+ T  D     +     + V   ++       ++ A   + 
Sbjct: 282 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341

Query: 635 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 676
            +          V+  G VP LV +      + +++A   ++
Sbjct: 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT 383

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  131 bits (330), Expect = 1e-32
 Identities = 46/280 (16%), Positives = 103/280 (36%), Gaps = 13/280 (4%)

Query: 412 DLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALL 471
           DL + +    R  T  L  L ++      + A    +  LV +LH ++ ++  ++  A+ 
Sbjct: 198 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257

Query: 472 NLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGRSGA 529
            L+   +     +     +  L+ +L          A   + ++    D    K+  +GA
Sbjct: 258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 317

Query: 530 IGPLVDLLGNGTPRGKKDAATALFNL-SIYHENKARIVQAGAVKHLVDLMDPAAGMVDK- 587
           +     LL N     +K+A   + N+ +   +   ++V  G V  LV ++  A     K 
Sbjct: 318 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 377

Query: 588 AVAVLANLAT--IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT------N 639
           A   + N  +    +  V +     I  L+ ++     +  +    A+  +         
Sbjct: 378 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 437

Query: 640 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS-YF 678
           + +   M+ + G +  + AL +       + +  L+  YF
Sbjct: 438 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  104 bits (260), Expect = 1e-23
 Identities = 33/202 (16%), Positives = 77/202 (38%), Gaps = 11/202 (5%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 465
           V +LV+ L +T L     A   +  +     +    + + GA+ +   +L + +T IQ+ 
Sbjct: 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 335

Query: 466 AVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK--I 522
           A   + N+ +   +    + N   +  L+ VL     + ++ AA  + + +     +  +
Sbjct: 336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIV 395

Query: 523 KIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR-------IVQAGAVKHLV 575
            +   G I PL++LL     +  +    A+ N+    E           I + G +  + 
Sbjct: 396 YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIE 455

Query: 576 DLMD-PAAGMVDKAVAVLANLA 596
            L       +   ++ ++    
Sbjct: 456 ALQRHENESVYKASLNLIEKYF 477

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 99.3 bits (247), Expect = 5e-22
 Identities = 47/226 (20%), Positives = 85/226 (37%), Gaps = 11/226 (4%)

Query: 463 QENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK- 521
             +  T   + ++ D   +      ++E ++  + + + E++  A      L   E    
Sbjct: 33  SPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPP 92

Query: 522 -IKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNL-SIYHENKARIVQAGAVKHLVDLM 578
              I R+G I   V  LG       + ++A AL N+ S   E    +V  GA+   + L+
Sbjct: 93  IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 152

Query: 579 D-PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARG-----KENAAA 631
             P A + ++AV  L N+A      R  + +   I  L+ ++ +            N   
Sbjct: 153 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212

Query: 632 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 677
            L  LC N +    +   E  +P LV L     P     +   +SY
Sbjct: 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  164 bits (416), Expect = 9e-44
 Identities = 61/301 (20%), Positives = 125/301 (41%), Gaps = 7/301 (2%)

Query: 385 PRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELR-LLAKHNMDNRMVIA 443
                +S +  +   S ++ ++ ++ + L S  +  Q  AT + R +L++ +     V+ 
Sbjct: 68  DEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVI 127

Query: 444 NCGAINILVDMLHSSE-TKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSP 501
             G +  LV+ +  ++   +Q  A  AL N+ S        + +A+A+   I +L TGS 
Sbjct: 128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV 187

Query: 502 EARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 560
           E +E A   L +++    D +  + +  A+ P++ L  +  P   + A   L NL    +
Sbjct: 188 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK 247

Query: 561 NKARIVQ-AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENG-IPVLVEV 617
            +      + A+  L  L+       +  A   ++ L+  P   +    +      LVE+
Sbjct: 248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL 307

Query: 618 VELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 677
           +   S   +  A  A+  + T +     +V+  G +P L  L  S     K++A   +S 
Sbjct: 308 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367

Query: 678 F 678
            
Sbjct: 368 I 368

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  157 bits (398), Expect = 2e-41
 Identities = 54/280 (19%), Positives = 109/280 (38%), Gaps = 8/280 (2%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 465
           V   ++ L + S++ + +A   L  +A  + D R  +  C A+  ++ + +S++  +   
Sbjct: 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 234

Query: 466 AVTALLNLSINDNN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 524
           A   L NL             + A+  L  ++ +   E   +A   +  LS      I+ 
Sbjct: 235 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQA 294

Query: 525 G-RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLMD-PA 581
                    LV+LL + +   +  A  A+ N+          ++ AG +  L  L+  P 
Sbjct: 295 VIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK 354

Query: 582 AGMVDKAVAVLANL-ATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC--- 637
             +  +A   ++N+ A   +   A+   N IP LV+++E+   + K+ A  A+       
Sbjct: 355 ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG 414

Query: 638 TNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 677
                    ++ +G + PL  L +    R  E     L  
Sbjct: 415 LQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 454

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  155 bits (392), Expect = 1e-40
 Identities = 56/279 (20%), Positives = 116/279 (41%), Gaps = 6/279 (2%)

Query: 406 VRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 464
           V +LVE ++ +     Q EA   L  +A        V+ +  A+ + + +L++   +++E
Sbjct: 132 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 191

Query: 465 NAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 523
            A+ AL N++  + + +  +   NA+EP++ +  +  P     A  TL +L   +  +  
Sbjct: 192 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 251

Query: 524 IGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLS-IYHENKARIVQAGAVKHLVDLM-DP 580
               S A+  L  L+ +       DA  A+  LS    E    ++     K LV+L+   
Sbjct: 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 311

Query: 581 AAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 639
           +  +   A+  + N+ T        +     +P L  ++       K+ A   +  +   
Sbjct: 312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 371

Query: 640 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 678
           ++     V+    +PPLV L +    + K++A   +S  
Sbjct: 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 410

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  113 bits (283), Expect = 2e-26
 Identities = 54/297 (18%), Positives = 109/297 (36%), Gaps = 38/297 (12%)

Query: 392 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 451
           G + + D S +   +  L + + S   +T  +A   +  L+    +    + +      L
Sbjct: 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRL 304

Query: 452 VDMLHSSETKIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAAT 510
           V++L    T +Q  A+ A+ N+   ND     + NA  +  L  +L +     ++ A  T
Sbjct: 305 VELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWT 364

Query: 511 LFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR----I 565
           + +++    +    +  +  I PLV LL     + KK+A  A+ N S     +      +
Sbjct: 365 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYL 424

Query: 566 VQAGAVKHLVDLMDPA-AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSAR 624
           V  G +K L DL++ A   +++  +  L N+                             
Sbjct: 425 VSQGCIKPLCDLLEIADNRIIEVTLDALENIL---------------------------- 456

Query: 625 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS-YFRN 680
             +   A       N +     + + G +  +    Q+   +  EKA  ++  YF  
Sbjct: 457 --KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 81.6 bits (201), Expect = 2e-16
 Identities = 37/184 (20%), Positives = 68/184 (36%), Gaps = 5/184 (2%)

Query: 500 SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 559
            P      +      SV  D +        +  +   L +   + +  A      +    
Sbjct: 59  IPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSRE 118

Query: 560 EN--KARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVL 614
                  ++QAG V  LV+ M  +    +  +A   L N+A+        +   + +P+ 
Sbjct: 119 HRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLF 178

Query: 615 VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQAL 674
           ++++  GS   KE A  AL  +  +S+ +   VLQ  A+ P++ L  S  P     A   
Sbjct: 179 IQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWT 238

Query: 675 LSYF 678
           LS  
Sbjct: 239 LSNL 242

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  159 bits (404), Expect = 9e-43
 Identities = 52/318 (16%), Positives = 96/318 (30%), Gaps = 36/318 (11%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 465
           + K V+ L S     Q      ++     +   +  +   G I  LVD+L S    +Q+ 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 466 AVTALLNLSI-NDNNKSAIANANAIEPLIHVL-QTGSPEARENAAATLFSLSVIEDNKIK 523
           A  AL NL   +  NK      N I   + +L +TG+ E ++     L++LS  ++ K +
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 524 IGRSGAIGPLVDLL---GNGTPRGK-------------KDAATALFNLSIYHENKARIVQ 567
           +    A+  L D +    +G   G               +A   L NLS     +  +  
Sbjct: 124 LIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 568 -AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG----- 621
            +G +  L+  +             + N   +                 ++         
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 622 -----------SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEK 670
                      S +   N     L     + +    +    A+   + L       A  +
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 671 AQALLSYFRNQRHGNAGR 688
           A A          G    
Sbjct: 303 ACAGALQNLTASKGLMSS 320

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  101 bits (251), Expect = 1e-22
 Identities = 23/174 (13%), Positives = 62/174 (35%), Gaps = 15/174 (8%)

Query: 404 TQVRKLVEDLKSTSLDTQREATAE-LRLLAKHN-----MDNRMVIANCGAINILVDMLHS 457
             +R  +  +  +  D   EA A  L+ L           ++++      +  +  +L S
Sbjct: 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS 342

Query: 458 SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSP------EARENAAATL 511
             + +  +  + L N+S +      + N      +  +L + +       +   +A  T+
Sbjct: 343 GNSDVVRSGASLLSNMSRHPLLHRVMGNQ-VFPEVTRLLTSHTGNTSNSEDILSSACYTV 401

Query: 512 FSLSVI-EDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKA 563
            +L         +   S  +  +++L  +  +P+  + A   L ++    E + 
Sbjct: 402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG 455

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  100 bits (249), Expect = 2e-22
 Identities = 38/294 (12%), Positives = 93/294 (31%), Gaps = 32/294 (10%)

Query: 414 KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNL 473
           +    +    AT  LR L+  +   + +    G I+ L+  + +     + +  +    +
Sbjct: 153 EVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCM 212

Query: 474 SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAA----------------TLFSLSVI 517
            +  N    +                +    +++                   L      
Sbjct: 213 CVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETN 272

Query: 518 EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAAT-ALFNLSIYHENKAR------IVQAGA 570
                 +  S AI   ++L+G        +A   AL NL+      +        ++   
Sbjct: 273 PKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKG 332

Query: 571 VKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGK--- 626
           +  +  L+    + +V    ++L+N++  P     +G     P +  ++   +       
Sbjct: 333 LPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSE 391

Query: 627 ---ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLS 676
               +A   +  L  +  +          +  ++ L +S  +P+A E A+ LLS
Sbjct: 392 DILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 92.6 bits (229), Expect = 5e-20
 Identities = 34/251 (13%), Positives = 77/251 (30%), Gaps = 23/251 (9%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 465
           V   +  L + S     E     R L  +  +     ++ G         + S+  +  N
Sbjct: 208 VENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGC------FSNKSDKMMNNN 261

Query: 466 AVTALLNLSINDNNKSAIANANAIEPLIHVLQTGS-PEARENAAATLFSLSV------IE 518
               L     N      + +++AI   ++++         E  A  L +L+         
Sbjct: 262 YDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321

Query: 519 DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM 578
            +++   +   +  +  LL +G     +  A+ L N+S +      +        +  L+
Sbjct: 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQV-FPEVTRLL 380

Query: 579 DPAAGMVDK-------AVAVLANLATI-PDGRVAIGQENGIPVLVEVVELG-SARGKENA 629
               G           A   + NL    P         + +  ++ +     S +  E A
Sbjct: 381 TSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440

Query: 630 AAALLQLCTNS 640
              L  + ++ 
Sbjct: 441 RLLLSDMWSSK 451

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 3/87 (3%)

Query: 400 SGIETQVRKLVEDL--KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS 457
                  R L       S S D    A   +R L            +   +N ++++  S
Sbjct: 371 QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRS 430

Query: 458 SET-KIQENAVTALLNLSINDNNKSAI 483
           S + K  E A   L ++  +   +  +
Sbjct: 431 SASPKAAEAARLLLSDMWSSKELQGVL 457

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  160 bits (405), Expect = 4e-42
 Identities = 67/380 (17%), Positives = 129/380 (33%), Gaps = 64/380 (16%)

Query: 360 EFPSRVMETRSRSQVIWRRPS--ERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTS 417
                + E     Q  W   +  ER     + +         +  + ++ +++  L    
Sbjct: 2   SPEFMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRL 61

Query: 418 LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-- 475
              +  A A L+ L   N   +  +     I +LV +L   + ++   A  AL N+S   
Sbjct: 62  DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121

Query: 476 NDNNKSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLV 534
           + +NK AI N + +  L+ +L+     +  E    TL++LS  +  K++I    A+  L 
Sbjct: 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALT 180

Query: 535 DLL---GNGTPRGKKDA---------------ATALFNLSIYHEN--KARIVQAGAVKHL 574
           D +    +G  R   +                A  L N+S       +      G V  L
Sbjct: 181 DEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDAL 240

Query: 575 VDLM-------DPAAGMVDKAVAVLANL--------------------------ATIPDG 601
           + ++       D  + +V+  V +L NL                           +   G
Sbjct: 241 IFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARG 300

Query: 602 RVAIGQENGIPVLVEVVELGSARG-KENAAAALLQLCTN----SSRFCSMVLQEGAVPPL 656
              + Q   + + + +++        E +A A+  LC           S + QE A+  +
Sbjct: 301 YELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI 360

Query: 657 VALSQSGTPRAKEKAQALLS 676
             L  +   R  + A   L 
Sbjct: 361 ADLLTNEHERVVKAASGALR 380

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  104 bits (260), Expect = 1e-23
 Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 17/180 (9%)

Query: 406 VRKLVEDLK-STSLDTQREATAELRLLAKHNM----DNRMVIANCGAINILVDMLHSSET 460
           VR  +  LK S +      +   ++ L           R  +    A++ + D+L +   
Sbjct: 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHE 369

Query: 461 KIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG--------SPEARENAAATLF 512
           ++ + A  AL NL+++  NK  I   +AI  L+  L  G        S +   +   T+ 
Sbjct: 370 RVVKAASGALRNLAVDARNKELIGK-HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTIN 428

Query: 513 SLSVI-EDNKIKIGRSGAIGPLVDLL--GNGTPRGKKDAATALFNLSIYHENKARIVQAG 569
            +     +   K+  +  I  LV +   GN + +  + AA  L  +  Y E +  + + G
Sbjct: 429 EVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEG 488

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  101 bits (252), Expect = 1e-22
 Identities = 53/285 (18%), Positives = 99/285 (34%), Gaps = 50/285 (17%)

Query: 399 LSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHS 457
            SG E +  +  +                LR ++    + R  +  C G ++ L+ ++ +
Sbjct: 187 HSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246

Query: 458 S------ETKIQENAVTALLNLS--------------------------INDNNKSAIAN 485
                  ++K+ EN V  L NLS                                  +  
Sbjct: 247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQ 306

Query: 486 ANAIEPLIHVLQTGS-PEARENAAATLFSLS-----VIEDNKIKIGRSGAIGPLVDLLGN 539
              +   I +L+    P   E +A  + +L           +  + +  A+  + DLL N
Sbjct: 307 PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN 366

Query: 540 GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDL---------MDPAAGMVDKAVA 590
              R  K A+ AL NL++   NK  I +  A+ +LV            + +   V   + 
Sbjct: 367 EHERVVKAASGALRNLAVDARNKELIGK-HAIPNLVKNLPGGQQNSSWNFSEDTVISILN 425

Query: 591 VLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 634
            +  +     +    + +  GI  LV + + G+   KE  AAAL+
Sbjct: 426 TINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALV 470

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 46.5 bits (109), Expect = 3e-05
 Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 2/106 (1%)

Query: 417 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLS 474
           S DT       +  +   N++    +     I  LV +  S     K    A   L  + 
Sbjct: 416 SEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475

Query: 475 INDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN 520
                +  +      +    V    +  ++ + +    +L +I+ N
Sbjct: 476 GYKELRKPLEKEGWKKSDFQVNLNNASRSQSSHSYDDSTLPLIDRN 521

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score =  143 bits (363), Expect = 5e-40
 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 2/145 (1%)

Query: 25  SEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRL- 83
           S    ++++   L +    LI A    +L +  +Q++ +     + +M S   +    + 
Sbjct: 29  SIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDDSQNGGDISKMKSKHDKYLMDMD 88

Query: 84  -VMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTR 142
            +  +  +      IP   C  +S ELM +P I  SG TY+R  I++ +       P TR
Sbjct: 89  ELFSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTR 148

Query: 143 QTLAHTTLIPNYTVKALIANWCELN 167
             L    LIPN  +K +I  + + N
Sbjct: 149 SPLTQDQLIPNLAMKEVIDAFIQEN 173

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score =  135 bits (343), Expect = 2e-38
 Identities = 43/74 (58%), Positives = 56/74 (75%)

Query: 97  IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 156
            P  F CP+SLELM DPVIV++GQTYER+ I+KW+D G   CPK+++TL H  L PNY +
Sbjct: 5   FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64

Query: 157 KALIANWCELNNVK 170
           K+LIA WCE N ++
Sbjct: 65  KSLIALWCESNGIE 78

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  144 bits (363), Expect = 5e-36
 Identities = 48/292 (16%), Positives = 96/292 (32%), Gaps = 8/292 (2%)

Query: 393 AETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILV 452
             T  +L     +   L E ++      Q                   V+AN G    L 
Sbjct: 442 VTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC 501

Query: 453 DMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLF 512
            +  +     QE     L  +      +  +     ++ L+ +   G+ + + +A   L 
Sbjct: 502 ALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALA 561

Query: 513 SLSVIEDNKIKIGRSG---AIGPLVDLLGNG-TPRGKKDAATALFNL-SIYHENKARIVQ 567
            + +  + ++          I PL++LL    T     ++  AL NL S+    + RI++
Sbjct: 562 RIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK 621

Query: 568 AGAVKHLVDLMDPAAGMVDK-AVAVLANLATIPDGRVAIGQENG-IPVLVEVVELGSARG 625
              V  +   +      + + A   L NL    D        N  +  L  + E      
Sbjct: 622 EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEET 681

Query: 626 KENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLVALSQSGTPRAKEKAQALLS 676
               A AL  + + S + C  +L     +  L  L  + +P  + +   ++ 
Sbjct: 682 ATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIIL 733

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  136 bits (344), Expect = 1e-33
 Identities = 51/320 (15%), Positives = 103/320 (32%), Gaps = 40/320 (12%)

Query: 398 DLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS 457
               +    R+ +        D +R A   L  L         +I +  +I+ L+D+   
Sbjct: 374 AALKLAEACRRFLIKP-GKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARG 432

Query: 458 SETKIQENAVTALLNLS---------------------------------INDNNKSAIA 484
                    VT  +NL                                    +   + +A
Sbjct: 433 GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLA 492

Query: 485 NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRG 544
           N      L  + +T S  ++E  A  L ++  +++ + K+ + G +  L+ +   GT +G
Sbjct: 493 NEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKG 552

Query: 545 KKDAATALFNLSIYHENKARIVQAG---AVKHLVDLMDPAAGMVDK--AVAVLANLATIP 599
           K+ A  AL  + I    +           ++ L++L+      ++   ++  L NLA++ 
Sbjct: 553 KRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612

Query: 600 DG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVA 658
           +  R  I +E G+  +   +          AA  L  L  +             V  L  
Sbjct: 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLAL 672

Query: 659 LSQSGTPRAKEKAQALLSYF 678
           L +             L+  
Sbjct: 673 LCEDEDEETATACAGALAII 692

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 91.4 bits (226), Expect = 3e-19
 Identities = 35/214 (16%), Positives = 69/214 (32%), Gaps = 5/214 (2%)

Query: 386 RIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQR-EATAELRLLAKHNMDNRMVIAN 444
           RI  T   E           +R L+  L+      +  E+   L  LA  N   R  I  
Sbjct: 562 RIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK 621

Query: 445 CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANAN-AIEPLIHVLQTGSPEA 503
              ++ +   L      +   A   L NL ++++        N  ++ L  + +    E 
Sbjct: 622 EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEET 681

Query: 504 RENAAATLFSLSVIEDNKIK--IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-E 560
               A  L  ++ +     +  +  +  +  L  L+ N +P  +      + N+     E
Sbjct: 682 ATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEE 741

Query: 561 NKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLAN 594
              ++ +   ++ L  L         KA  V   
Sbjct: 742 IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQ 775

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 71.8 bits (175), Expect = 4e-13
 Identities = 20/148 (13%), Positives = 49/148 (33%), Gaps = 2/148 (1%)

Query: 390 TSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD-NRMVIANCGAI 448
               +      G   +V+ L    +    +T       L ++   ++     ++A    +
Sbjct: 651 VMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWL 710

Query: 449 NILVDMLHSSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENA 507
           +IL  ++ +    +Q   +  +LN+ +  +     +   + +E L  + Q       +  
Sbjct: 711 DILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAR 770

Query: 508 AATLFSLSVIEDNKIKIGRSGAIGPLVD 535
                 L+  E  +I      A  P V 
Sbjct: 771 EVATQCLAAAERYRIIERSDNAEIPDVF 798

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 20/180 (11%), Positives = 52/180 (28%), Gaps = 5/180 (2%)

Query: 500 SPEARENAAATLFSL--SVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL-S 556
           +  +   A+  L  +  ++  D             + D L       K     A+  L +
Sbjct: 217 TGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLN 276

Query: 557 IYHENKARIVQA-GAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLV 615
              +   ++V   G ++ ++ +      +  +        A+    +     E G+ +L 
Sbjct: 277 GPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILK 336

Query: 616 EVVELGSARGKENAAAALLQLCTNS-SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQAL 674
            +    +   +  A   L +L +            +GA   L    +    +  +     
Sbjct: 337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIR 396

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  134 bits (338), Expect = 6e-36
 Identities = 43/226 (19%), Positives = 83/226 (36%), Gaps = 30/226 (13%)

Query: 400 SGIETQVRKLVEDLKSTSLD--TQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS 457
           + +E  + + V  L++  +       A   ++       + R  +     I  L+ +L  
Sbjct: 4   ADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV 63

Query: 458 SETKIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVL-QTGSPEARENAAATLFSLS 515
               +Q     AL NL   +++NK  +A  N +  L+ VL QT   E ++     L++LS
Sbjct: 64  QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123

Query: 516 VIEDNKIKIGRSGAIGPLVDLL---GNGTPRGKKD-------------AATALFNLSIYH 559
             +  K  +    A+  L + +    +G P G                    L N+S   
Sbjct: 124 SNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG 182

Query: 560 -ENKARIVQA-GAVKHLVDLM-------DPAAGMVDKAVAVLANLA 596
            + +  + +  G +  LV  +        P     +  V +L NL+
Sbjct: 183 ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 62.7 bits (152), Expect = 4e-11
 Identities = 25/176 (14%), Positives = 52/176 (29%), Gaps = 47/176 (26%)

Query: 489 IEPLIHVLQTGS--PEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNGTPRGK 545
           +E  + +L+     P     AA  +      + + + ++ +   I  L+ LL       +
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 546 KDAATALFNLSIYH-ENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVA 604
           +    AL NL     +NK  + +                                     
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELN----------------------------------- 94

Query: 605 IGQENGIPVLVEVVELGSARG-KENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 659
                G+P L++V++       K+     L  L +N       ++   A+  L   
Sbjct: 95  -----GVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL--KNLMITEALLTLTEN 143

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 53.0 bits (127), Expect = 6e-08
 Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 5/114 (4%)

Query: 568 AGAVKHLVDLM---DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSA 623
              ++  V ++         +  A   + +      + R  + Q  GI  L++++++ + 
Sbjct: 7   EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE 66

Query: 624 RGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVA-LSQSGTPRAKEKAQALLS 676
             +     AL  L    +     V +   VP L+  L Q+     K++   LL 
Sbjct: 67  DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLW 120

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score =  109 bits (274), Expect = 9e-29
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 97  IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 156
            P +F  PL   LMTDPV + SG   +R+ I + +       P  RQTL  + L P   +
Sbjct: 26  APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPT-DPFNRQTLTESMLEPVPEL 84

Query: 157 KALIANWCE 165
           K  I  W  
Sbjct: 85  KEQIQAWMR 93

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score =  108 bits (271), Expect = 1e-28
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 97  IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 156
            P +F  PL   LMTDPV + SG   +R+ I + +       P  RQ L  + L P   +
Sbjct: 11  APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPT-DPFNRQMLTESMLEPVPEL 69

Query: 157 KALIANWCELNNVK 170
           K  I  W       
Sbjct: 70  KEQIQAWMREKQSS 83

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score =  111 bits (278), Expect = 2e-25
 Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 13/151 (8%)

Query: 26  EILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGE----------AEFMDQMISL 75
           ++L  +       S Q   I AVA ++   N     +A +           EF++++++ 
Sbjct: 808 DLLKALTTVYINLSEQSEFISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNF 867

Query: 76  VTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLG 134
             +  ++    ++  +     +P +F  PL   +M DPVI+  S    +R+ IK  + L 
Sbjct: 868 ANKAEEQRKADEEEDLEYG-DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL-LS 925

Query: 135 LFVCPKTRQTLAHTTLIPNYTVKALIANWCE 165
               P  R  L    + PN  ++  I  + +
Sbjct: 926 DSTDPFNRMPLKLEDVTPNEELRQKILCFKK 956

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score = 97.9 bits (244), Expect = 9e-25
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 86  IKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQ-TYERAFIKKWIDLGLFVCPKTRQT 144
           ++Q +  +      +F  P+   LM DPV++ S + T +R+ I + +       P  R  
Sbjct: 8   LQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQT-DPFNRSP 66

Query: 145 LAHTTLIPNYTVKALIANWCELN 167
           L    + PN  +K  I  W    
Sbjct: 67  LTMDQIRPNTELKEKIQRWLAER 89

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 97.0 bits (241), Expect = 2e-22
 Identities = 41/251 (16%), Positives = 84/251 (33%), Gaps = 8/251 (3%)

Query: 394 ETRADLSGIETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILV 452
           + ++ L  +   +     + + +     +  A   L  L   NMDN         +++LV
Sbjct: 29  QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLV 87

Query: 453 D-MLHSSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQT-GSPEARENAAA 509
              L +    ++  A   +          +  +    A+  L+ +L        R  A  
Sbjct: 88  GRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALF 147

Query: 510 TLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQ 567
            +  L    E   ++  R      L+  +     + K  +A  L NL + H E+K  +  
Sbjct: 148 AISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS 207

Query: 568 AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGK 626
            G V+ LV L+    +   +  +  L +L T     V   +E  + +   +        +
Sbjct: 208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQ 267

Query: 627 ENAAAALLQLC 637
                  L+ C
Sbjct: 268 HEEYQEELEFC 278

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 86.2 bits (213), Expect = 1e-18
 Identities = 42/210 (20%), Positives = 73/210 (34%), Gaps = 7/210 (3%)

Query: 476 NDNNKSAIANANAIEPLIHVL--QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPL 533
            +  KS +   +   P       Q    + RE A   L  L    DN     +   +  L
Sbjct: 27  VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLL 86

Query: 534 VD-LLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM--DPAAGMVDKAV 589
           V   L  G    +  AA  +   S      + +++  GA++ L+ L+  D    +  KA+
Sbjct: 87  VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKAL 146

Query: 590 AVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVL 648
             ++ L      G +   + +G  VL+  ++    + K  +A  L  L          + 
Sbjct: 147 FAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 206

Query: 649 QEGAVPPLVALSQSGTPRAKEKAQALLSYF 678
             G V  LVAL ++      E     L   
Sbjct: 207 SMGMVQQLVALVRTEHSPFHEHVLGALCSL 236

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 93.4 bits (232), Expect = 3e-21
 Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 6/144 (4%)

Query: 30  KVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLV----- 84
           ++ +   L S    LI A    +L+E     E   +   +    + +   HD+ +     
Sbjct: 132 RIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDE 191

Query: 85  MIKQSQI-CSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQ 143
           +  Q         IP   C  +S ELM +P I  SG TY+R  I++ +       P TR 
Sbjct: 192 LFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRS 251

Query: 144 TLAHTTLIPNYTVKALIANWCELN 167
            L    LIPN  +K +I  +   N
Sbjct: 252 PLTQEQLIPNLAMKEVIDAFISEN 275

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 71.9 bits (176), Expect = 1e-15
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 98  PSDFCCPLSLELMTDPVIVAS-GQTYERAFIKKWID-----LGLFVCPKT---RQTLAHT 148
            S F CP++ E M  PV     G TYE   I + I+          CP+       +  +
Sbjct: 5   SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64

Query: 149 TLIPNYTVKALIANWCELNNVKLPDPTKTA 178
            LI +  ++  I N  +  +        + 
Sbjct: 65  DLIQDEALRRAIENHNKKRHRHSESGPSSG 94

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 79.8 bits (196), Expect = 1e-15
 Identities = 40/261 (15%), Positives = 87/261 (33%), Gaps = 35/261 (13%)

Query: 434 HNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLI 493
             + N   I     I+ L   +H+     ++  V  + N++ + N    +A   A++ ++
Sbjct: 445 ILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIIL 504

Query: 494 HVLQTGSP---EARENAAATLFSLSVIEDNKI---KIGRSGAIGPLVDLLGNGTPRGKK- 546
             L          R      L  + +  +  +   K     AI  L +LL   TP     
Sbjct: 505 EYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNP 564

Query: 547 -------------DAATALFNLSIYHEN------KARIVQAGAVKHLVDLMDPAAGMVDK 587
                        +A  AL NL+    +      K  +        + +LM      + +
Sbjct: 565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQR 624

Query: 588 A-VAVLANLATIPDGRVAIGQENGIP-------VLVEVVELGSARGKENAAAALLQLCTN 639
           + + +++N+ + P    A       P       +LV++++L     +   AA    + T 
Sbjct: 625 STLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684

Query: 640 SSRFCSMVLQ-EGAVPPLVAL 659
                  +L  +  +   + +
Sbjct: 685 IPLIAKELLTKKELIENAIQV 705

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 61.0 bits (147), Expect = 1e-09
 Identities = 29/246 (11%), Positives = 77/246 (31%), Gaps = 33/246 (13%)

Query: 463 QENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKI 522
            +          I   N+  I     I  L   +   SP  ++     +++++  ++   
Sbjct: 433 DKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIP 492

Query: 523 KIGRSGAIGPLVDLLGNGTPRGKKD---AATALFNLSIY---HENKARIVQAGAVKHLVD 576
           ++ + GA+  +++ L N    G+        AL  + I+        +     A+  L +
Sbjct: 493 QLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFE 552

Query: 577 LMDPAAGMVD---------------KAVAVLANLATIPDG------RVAIGQENGIPVLV 615
           L+  +  + D               +A+  L NLA+          +  +  +     + 
Sbjct: 553 LLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612

Query: 616 EVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEG------AVPPLVALSQSGTPRAKE 669
            ++   +   + +    +  + ++     +                LV L Q     ++ 
Sbjct: 613 NLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQR 672

Query: 670 KAQALL 675
              A+ 
Sbjct: 673 AVAAIF 678

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 50.9 bits (121), Expect = 1e-06
 Identities = 36/247 (14%), Positives = 81/247 (32%), Gaps = 50/247 (20%)

Query: 448 INILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA-NANAIEPLIHVLQTGS------ 500
             I ++ +        E +V AL  LS+  + K  I  N +  E L+ ++++        
Sbjct: 336 SEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLY 395

Query: 501 ----------------------------------PEARENAAATLFSLSVIEDNKIKIGR 526
                                             P A +  A       ++  N+  I R
Sbjct: 396 GLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILR 455

Query: 527 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVD 586
           +  I  L   + N +P  K+     ++N++       ++ Q GAVK +++ +     + +
Sbjct: 456 TELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGE 515

Query: 587 K----AVAVLANLATIPDGRVAIGQE---NGIPVLVEVVELGSARGKENAAAALLQLCTN 639
                    L  +    +  +   +    N IP L E+  L  +   ++      +    
Sbjct: 516 PIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFEL--LPRSTPVDDNPLHNDEQIKL 573

Query: 640 SSRFCSM 646
           +  + ++
Sbjct: 574 TDNYEAL 580

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.7 bits (180), Expect = 1e-13
 Identities = 90/681 (13%), Positives = 180/681 (26%), Gaps = 241/681 (35%)

Query: 14  IRDQVDGVAPSSEI--LVKVAESLS--------LRSNQEILIEAVALEKLKENAE----- 58
           ++D    +    EI  ++   +++S        L S QE +++    E L+ N +     
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97

Query: 59  -QAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSL-----ELMTD 112
            + E+   +      I    R+++   +  +  +    P        L L     EL   
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY-------LKLRQALLELRPA 150

Query: 113 PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIAN---WCELNNV 169
             ++  G             LG     KT   +A      +Y V+  +     W  L N 
Sbjct: 151 KNVLIDG------------VLG---SGKT--WVALDVC-LSYKVQCKMDFKIFWLNLKNC 192

Query: 170 KLP--------------DPTKTASLNQPSPLFVHADSNAPRDSHIFPHTRGNQQ--IM-- 211
             P              DP  T+  +  S + +   S       +           ++  
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 212 ---PESTRSTNSPAKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLDIARISLTSS 268
               ++  + N   K L++   TR               +  +           ISL   
Sbjct: 253 VQNAKAWNAFNLSCKILLT---TR---------------FKQVTDFLSAATTTHISLDHH 294

Query: 269 EDRFSNSEERSMELV-----------------GQP---SM-SKSIKEFPATIDTSEQSSH 307
               +  E     L+                   P   S+ ++SI++  AT D  +    
Sbjct: 295 SMTLTPDE--VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-- 350

Query: 308 IHNRTASASSVLSNLNLSQGDANETSELSNHSDASGEGKLESQPATTMRRE-------PE 360
                                     +L+   ++S    L        R+        P 
Sbjct: 351 -----------------------NCDKLTTIIESS----LNVLEPAEYRKMFDRLSVFPP 383

Query: 361 ---FPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTS 417
               P+ ++       +IW    +  V  +V+                  KL +   S  
Sbjct: 384 SAHIPTILLS------LIWFDVIKSDVMVVVN------------------KLHK--YS-- 415

Query: 418 LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSI 475
                       L+ K   ++ + I              S   E K++     AL    +
Sbjct: 416 ------------LVEKQPKESTISI-------------PSIYLELKVKLENEYALHRSIV 450

Query: 476 NDNNKSAIANANAIEPLI-----------HVLQTGSPEARENAAATLFSLSVIEDNKIKI 524
           +  N     +++ + P             H+     PE              +E  KI+ 
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-QKIRH 509

Query: 525 GRS--GAIGPLVDLLG-------------NGTPRGKKDAATALFNLS--IYHENKARIVQ 567
             +   A G +++ L                  R        L  +   +       +++
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569

Query: 568 AGAVKHLVDLMDPAAGMVDKA 588
                    LM     + ++A
Sbjct: 570 IA-------LMAEDEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 5e-08
 Identities = 58/426 (13%), Positives = 125/426 (29%), Gaps = 128/426 (30%)

Query: 290 KSIKEFPATIDTSEQSSHIHNR--TASASSVLSNLNLSQGDANETSELSNHSDASGEGKL 347
           K +++ P +I + E+  HI       S +  L    LS+       +            L
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-EEMVQKFVEEVLRINYKFL 94

Query: 348 ESQPATTMRREPEFPSRVM----ETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIE 403
                + ++ E   PS +     E R R   ++    + F    V      +R       
Sbjct: 95  ----MSPIKTEQRQPSMMTRMYIEQRDR---LYNDN-QVFAKYNV------SRLQP---Y 137

Query: 404 TQVRKLVEDLKS--------------TSLDTQREATAELR-LLAKHNMDNR---MVIANC 445
            ++R+ + +L+               T +     A         +  MD +   + + NC
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWV-----ALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 446 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARE 505
            +   +++ML     +I  N        S +D++ +     ++I+  +  L    P    
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWT------SRSDHSSNIKLRIHSIQAELRRLLKSKPYEN- 245

Query: 506 NAAATLFSLSVIEDNKI--------KIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 557
                L  L  +++ K         KI        L+      T R             +
Sbjct: 246 ----CLLVLLNVQNAKAWNAFNLSCKI--------LL------TTR----------FKQV 277

Query: 558 YHENKARIVQAGAVKHLVDLMDPAAGMV-DKAVAVLANLATIPDG---RVAIGQENGIPV 613
                   + A    H + L   +  +  D+  ++L            R  +      P 
Sbjct: 278 -----TDFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT---TNPR 328

Query: 614 LVEVVELGSARGKENAA-------------AALLQLCTNS-------SRFCSM-VLQEGA 652
            + ++   +   ++  A               +++   N          F  + V    A
Sbjct: 329 RLSII---AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385

Query: 653 -VPPLV 657
            +P ++
Sbjct: 386 HIPTIL 391

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 1e-04
 Identities = 34/309 (11%), Positives = 90/309 (29%), Gaps = 93/309 (30%)

Query: 13  AIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEK------AGEA 66
            + D +     +   L   + +L+    + +L++ +   + ++   +         +  A
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIA 334

Query: 67  EFMDQMISLVTR----MHDRLVMIKQSQI--------------CS--P--VPIPSDFCCP 104
           E +   ++          D+L  I +S +               S  P    IP+     
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394

Query: 105 LSLELMTDPVIVASGQTYERAFIKKWI--------DLGLFVCPKTRQTLA-HTTLIPNYT 155
           +  +++   V+V   + ++ + ++K           + L +  K     A H +++ +Y 
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY- 453

Query: 156 VKALIANWCELNNVKLPDPT------------KTASLNQPSPLF--------------VH 189
              +   +   ++  +P               K     +   LF               H
Sbjct: 454 --NIPKTFD--SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509

Query: 190 ADS--NAPRD------------SHIFPHTRGNQQIMPE--------STRSTNSPAKNLV- 226
             +  NA                +I  +    ++++                S   +L+ 
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569

Query: 227 -SLNNTREG 234
            +L    E 
Sbjct: 570 IALMAEDEA 578

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 59.7 bits (145), Expect = 8e-12
 Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 99  SDFCCPLSLELMTDPVI-VASGQTYERAFIKKWI-DLGLFVCPKTRQTLAHTTLIPNYT 155
           S   C +S ++   PV+   S   +E++ +++++ D G    P T + L+   ++    
Sbjct: 2   SHMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG--NDPITNEPLSIEEIVEIVP 58

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 48/235 (20%), Positives = 84/235 (35%), Gaps = 52/235 (22%)

Query: 447 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEAREN 506
            + + +  L      ++  A  AL            I +  A+EPLI  L+      R  
Sbjct: 20  KVEMYIKNLQDDSYYVRRAAAYAL----------GKIGDERAVEPLIKALKDEDAWVRRA 69

Query: 507 AAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV 566
           AA  L           +IG   A+ PL+  L +     ++ AA AL           +I 
Sbjct: 70  AADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVAL----------GQIG 109

Query: 567 QAGAVKHLVD-LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARG 625
              AV+ L+  L D    +   A   L            IG E  +  L++ ++      
Sbjct: 110 DERAVEPLIKALKDEDWFVRIAAAFALGE----------IGDERAVEPLIKALKDEDGWV 159

Query: 626 KENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 680
           +++AA AL ++             E     +  L+++GT  A++ A   L   ++
Sbjct: 160 RQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 48/232 (20%), Positives = 79/232 (34%), Gaps = 52/232 (22%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 465
           V   +++L+  S   +R A   L             I +  A+  L+  L   +  ++  
Sbjct: 21  VEMYIKNLQDDSYYVRRAAAYALG-----------KIGDERAVEPLIKALKDEDAWVRRA 69

Query: 466 AVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 525
           A  AL            I +  A+EPLI  L+      R++AA  L           +IG
Sbjct: 70  AADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVAL----------GQIG 109

Query: 526 RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGM 584
              A+ PL+  L +     +  AA AL            I    AV+ L+  + D    +
Sbjct: 110 DERAVEPLIKALKDEDWFVRIAAAFAL----------GEIGDERAVEPLIKALKDEDGWV 159

Query: 585 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 636
              A   L            IG E     + ++ E G+   ++ A   L   
Sbjct: 160 RQSAADALGE----------IGGERVRAAMEKLAETGTGFARKVAVNYLETH 201

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 48/229 (20%), Positives = 79/229 (34%), Gaps = 52/229 (22%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 465
           V   +++L+  S   +R A   L             I +  A+  L+  L   +  ++  
Sbjct: 16  VEMYIKNLQDDSYYVRRAAAYALG-----------KIGDERAVEPLIKALKDEDAWVRRA 64

Query: 466 AVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 525
           A  AL            I +  A+EPLI  L+      R++AA  L           +IG
Sbjct: 65  AADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVALG----------QIG 104

Query: 526 RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGM 584
              A+ PL+  L +     +  AA AL            I    AV+ L+  + D    +
Sbjct: 105 DERAVEPLIKALKDEDWFVRIAAAFAL----------GEIGDERAVEPLIKALKDEDGWV 154

Query: 585 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 633
              A   L            IG E     + ++ E G+   ++ A   L
Sbjct: 155 RQSAADALGE----------IGGERVRAAMEKLAETGTGFARKVAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 45/210 (21%), Positives = 69/210 (32%), Gaps = 58/210 (27%)

Query: 483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTP 542
             +   +E  I  LQ  S   R  AA  L           KIG   A+ PL+  L +   
Sbjct: 10  HTDPEKVEMYIKNLQDDSYYVRRAAAYAL----------GKIGDERAVEPLIKALKDEDA 59

Query: 543 RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG 601
             ++ AA AL           +I    AV+ L+  + D    +   A   L         
Sbjct: 60  WVRRAAADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ------- 102

Query: 602 RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLV---- 657
              IG E  +  L++ ++      +  AA AL ++             E AV PL+    
Sbjct: 103 ---IGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEPLIKALK 148

Query: 658 ------------ALSQSGTPRAKEKAQALL 675
                       AL + G  R +   + L 
Sbjct: 149 DEDGWVRQSAADALGEIGGERVRAAMEKLA 178

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 58.6 bits (141), Expect = 4e-09
 Identities = 52/292 (17%), Positives = 106/292 (36%), Gaps = 35/292 (11%)

Query: 391 SGAETRADLSGIETQVRKLVEDL-KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAIN 449
            G       +  ET ++KL + +  ST LD +R A   L+ L+K     R+ +    A+ 
Sbjct: 9   GGQSAGPQHTEAET-IQKLCDRVASSTLLDDRRNAVRALKSLSK---KYRLEVGI-QAME 63

Query: 450 ILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAA 509
            L+ +L                     D + S I    A++ L +++     E  E  + 
Sbjct: 64  HLIHVLQ-------------------TDRSDSEIIGY-ALDTLYNIISNDEEEEVEENST 103

Query: 510 TLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR---IV 566
                   +  +I I +   +  L+ LL       +      L +L      + +   +V
Sbjct: 104 RQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILV 163

Query: 567 QAGAVKHLVDLMDPAAGMV-DKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVEL-GSA 623
               V  L+DL+  +  ++ +  V +L  L       +  +  EN    L++++   G++
Sbjct: 164 SPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNS 223

Query: 624 RGK---ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQ 672
            G    E+    L  L  N++   +   +   +  +    + G   +   AQ
Sbjct: 224 DGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQ 275

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 45.1 bits (106), Expect = 6e-05
 Identities = 30/187 (16%), Positives = 72/187 (38%), Gaps = 8/187 (4%)

Query: 322 LNLSQGDANETSELSNHSDASGEGKLESQPATTMRREPEFPSRVMETRSRSQVIWRRPSE 381
            N+   D  E  E ++   +     L SQ      ++ E  + ++          R P  
Sbjct: 87  YNIISNDEEEEVEENSTRQSE---DLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGV 143

Query: 382 RFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMV 441
           + +  ++   G + +  +      V +L++ L  +    + +    L+ L + N   + +
Sbjct: 144 KLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKI 203

Query: 442 IANCGAINILVDMLH----SSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVL 496
           +A   A   L+D++     S    + E+ +  L NL   N++N++     + I+ +    
Sbjct: 204 VAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWF 263

Query: 497 QTGSPEA 503
           + G   +
Sbjct: 264 EVGDENS 270

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 55.3 bits (132), Expect = 2e-08
 Identities = 17/176 (9%), Positives = 52/176 (29%), Gaps = 9/176 (5%)

Query: 2   EYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAE 61
            +++    +K+  +   D        L    +  +       L E        E A    
Sbjct: 82  SFDEHIKDLKKNFKQSSDACPQID--LSTWDKYRTGELTAPKLSELYLNMPTPEPATMVN 139

Query: 62  KAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPS---DFCCPLSLELMTDPVIVAS 118
                + +  +  +       +  ++       + I     +  CP++ +    P+I   
Sbjct: 140 NTDTLKILKVLPYIWNDPTCVIPDLQNPADEDDLQIEGGKIELTCPITCKPYEAPLISRK 199

Query: 119 -GQTYERAFIKKWIDL-GLFVCPKT--RQTLAHTTLIPNYTVKALIANWCELNNVK 170
               ++R  I+ ++       CP+    Q ++    + +  ++          + +
Sbjct: 200 CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMKESQE 255

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 93  SPVPIPSDFCCPLSLELMTDPVIVAS-GQTYERAFIKK-WIDLGLFVCPKTRQTLAHT-T 149
              PIP +  C +  ++MTD V++   G +Y    I+   ++     CP   Q       
Sbjct: 6   EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 65

Query: 150 LIPNYTVKALIANW 163
           LI N  ++  + N+
Sbjct: 66  LIANKFLRQAVNNF 79

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 33/245 (13%), Positives = 70/245 (28%), Gaps = 54/245 (22%)

Query: 447 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEAREN 506
             + L  +L    +  + ++   L                +A+   I      +   R+ 
Sbjct: 24  NDDELFRLLDDHNSLKRISSARVL----------QLRGGQDAVRLAIEFCSDKNYIRRDI 73

Query: 507 AAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV 566
            A  L                G I            +  +D    +   ++   +K+  V
Sbjct: 74  GAFIL----------------GQI---------KICKKCEDNVFNIL-NNMALNDKSACV 107

Query: 567 QAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRV---------AIGQENGIPVLVEV 617
           +A A++              K V      A      V          I  +  IP+L+ +
Sbjct: 108 RATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINL 167

Query: 618 VELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 677
           ++  +   +  AA A+     ++                V + Q      + +A   LSY
Sbjct: 168 LKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAIIGLSY 218

Query: 678 FRNQR 682
            +++R
Sbjct: 219 RKDKR 223

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 32/147 (21%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 465
           +      +   +   +R+ +  L  +               A   L++ L + + +I+  
Sbjct: 14  LVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGA 61

Query: 466 AVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 525
           A   +              +  A+EPLI +L+  S   R  AA +L           +IG
Sbjct: 62  AAWII----------GNFQDERAVEPLIKLLEDDSGFVRSGAARSL----------EQIG 101

Query: 526 RSGAIGPLVDLLGNGTPRGKKDAATAL 552
                  +  L   GT   +K A   L
Sbjct: 102 GERVRAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 32/150 (21%)

Query: 485 NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRG 544
           +++ + P    +   +   R + +  L           ++G   A  PL++ L N   R 
Sbjct: 10  HSSGLVPRGSHMADENKWVRRDVSTAL----------SRMG-DEAFEPLLESLSNEDWRI 58

Query: 545 KKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV 603
           +  AA  +                 AV+ L+ L+ D +  +   A   L           
Sbjct: 59  RGAAAWII----------GNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQ--------- 99

Query: 604 AIGQENGIPVLVEVVELGSARGKENAAAAL 633
            IG E     + ++ E G+   ++ A   L
Sbjct: 100 -IGGERVRAAMEKLAETGTGFARKVAVNYL 128

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 46.7 bits (111), Expect = 4e-07
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 93  SPVPIPSDFCCPLSLELMTDPVIVAS-GQTYERAFIKK-WIDLGLFVCPKTRQTL 145
              PIP +  C +  ++MTD V++   G +Y    I+   ++     CP   Q  
Sbjct: 8   EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 99  SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-TLIPNYTVK 157
             F C    EL+  PV         +  +++     +F CP  R  L     +IPN  ++
Sbjct: 77  QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQ 136

Query: 158 ALI 160
            L+
Sbjct: 137 TLL 139

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 18/67 (26%), Positives = 27/67 (40%)

Query: 94  PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 153
             P+ S + CP+ L  + + V    G  + +A I K I      CP   + L    L P+
Sbjct: 12  DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71

Query: 154 YTVKALI 160
              K  I
Sbjct: 72  NFAKREI 78

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 93  SPVPIPSDFCCPLSLELMTDPV-IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-TL 150
           SP  + S+  CP+ L+++ + +        +    I   +  G   CP  R+ L    +L
Sbjct: 47  SPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSL 106

Query: 151 IPNYTVKALIA 161
            P+    ALI+
Sbjct: 107 RPDPNFDALIS 117

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 96  PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-TLIPNY 154
            +   F C    EL+  P+         +  + +     +F CP  R  L  +  +  N 
Sbjct: 48  KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQ 107

Query: 155 TVKALI 160
            ++ ++
Sbjct: 108 PLQTVL 113

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 44.1 bits (104), Expect = 7e-06
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 97  IPSDFCCPLSLELMTDPVIVAS-GQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYT 155
           I   F C + +E + D  +     +    + I++W+      CP  R  L    L+    
Sbjct: 19  IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRW 78

Query: 156 VKALIANWCELNNVKLPDPTK 176
            + +     +L+ ++L   TK
Sbjct: 79  AEEVTQ---QLDTLQLCSLTK 96

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 18/69 (26%), Positives = 28/69 (40%)

Query: 94  PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 153
             P+ S + CP+ L  + + V    G  + +A I K I      CP   + L    L P+
Sbjct: 12  DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71

Query: 154 YTVKALIAN 162
              K  I +
Sbjct: 72  NFAKREILS 80

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 4/50 (8%), Positives = 16/50 (32%)

Query: 96  PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 145
            +   + C     ++  P     G  +  + +   +      C   ++++
Sbjct: 11  TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESI 60

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 2/69 (2%)

Query: 96  PIPSDFCCPLSLELMTDPVIVAS-GQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNY 154
            I     C +  E     +I+      Y    I+K++      CP    T+    L  N 
Sbjct: 18  TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTEPDLKNNR 76

Query: 155 TVKALIANW 163
            +  L+ + 
Sbjct: 77  ILDELVKSL 85

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 8/77 (10%), Positives = 19/77 (24%)

Query: 94  PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 153
              + + + C     ++  P     G  Y    +   +  G   C        +   I  
Sbjct: 25  GTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISI 84

Query: 154 YTVKALIANWCELNNVK 170
               +   +      V+
Sbjct: 85  LESSSAFPDNAARREVE 101

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 93  SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI- 151
             +P  S+  C + +E++ +PV +    T  +   +  ++     CP  R+ ++  T   
Sbjct: 8   DAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYH 67

Query: 152 --PNYTVKALIANWCE 165
              N  V   +    +
Sbjct: 68  TRRNSLVNVELWTIIQ 83

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKTRQTLAHTTLIPNYTVK 157
              CP+ LEL+ +PV       + +  + K ++   G   CP  +  +   +L  +    
Sbjct: 21  ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFS 80

Query: 158 ALI 160
            L+
Sbjct: 81  QLV 83

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWID-----LGLFVCPKTRQTLAHTTLIPNY 154
           +  CP+ LEL+ +PV      ++ RA I    +      G   CP  R       L PN 
Sbjct: 19  EVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNL 78

Query: 155 TVKALI 160
            V  ++
Sbjct: 79  HVANIV 84

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 93  SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 152
           +  P  +   C + L+    PV +     +    +K    LG   C   RQ +    L  
Sbjct: 8   NTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK-RCALCRQEIPEDFLDS 66

Query: 153 NY 154
             
Sbjct: 67  GP 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	689
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	3e-22
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-22
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-19
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-19
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	9e-19
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-17
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	9e-16
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-04
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-21
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	7e-17
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-16
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-07
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-06
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	6e-18
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-08
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	0.002
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	8e-18
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-16
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	9e-10
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-08
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-07
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-06
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	6e-05
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-11
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	2e-11
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-11
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	1e-09
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	6e-08
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	4e-07
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	4e-06
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.001

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 89.0 bits (220), Expect = 3e-22
 Identities = 43/74 (58%), Positives = 56/74 (75%)

Query: 97  IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 156
            P  F CP+SLELM DPVIV++GQTYER+ I+KW+D G   CPK+++TL H  L PNY +
Sbjct: 5   FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64

Query: 157 KALIANWCELNNVK 170
           K+LIA WCE N ++
Sbjct: 65  KSLIALWCESNGIE 78

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (243), Expect = 3e-22
 Identities = 39/185 (21%), Positives = 56/185 (30%), Gaps = 20/185 (10%)

Query: 413 LKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLN 472
           L   S     +AT  L         N   +   GAI  LV +L  +    Q         
Sbjct: 364 LHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423

Query: 473 LSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGP 532
               +  +                     E  E     L  L+    N+I I     I  
Sbjct: 424 QQFVEGVRM-------------------EEIVEGCTGALHILARDVHNRIVIRGLNTIPL 464

Query: 533 LVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAV 591
            V LL +     ++ AA  L  L+   E    I   GA   L +L+     G+   A AV
Sbjct: 465 FVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 524

Query: 592 LANLA 596
           L  ++
Sbjct: 525 LFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.2 bits (219), Expect = 4e-19
 Identities = 55/278 (19%), Positives = 102/278 (36%), Gaps = 8/278 (2%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQE 464
           + +L + L         +A   +  L+K       ++ +   ++ +V  + ++++ +   
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78

Query: 465 NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 524
                L NLS +     AI  +  I  L+ +L +        A  TL +L + ++     
Sbjct: 79  CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138

Query: 525 GR-SGAIGPLVDLLGNGTPRGKKDAATALFNL-SIYHENKARIVQAGAVKHLVDLMD--P 580
            R +G +  +V LL     +        L  L     E+K  I+ +G  + LV++M    
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198

Query: 581 AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 640
              ++     VL  L+     + AI +  G+  L   +   S R  +N    L  L   S
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---S 255

Query: 641 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 678
                    EG +  LV L  S        A  +LS  
Sbjct: 256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 293

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.4 bits (217), Expect = 6e-19
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 21/205 (10%)

Query: 434 HNMDNRMVIANCGAINILVDMLHSSETK-IQENAVTALLNLSINDNNKSAIANANAIEPL 492
                +  +     + ++V +LH      + +  V  + NL++   N + +    AI  L
Sbjct: 343 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 402

Query: 493 IHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL 552
           + +L     + +   +        +E  +++    G  G                   AL
Sbjct: 403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG-------------------AL 443

Query: 553 FNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGI 611
             L+    N+  I     +   V L+  P   +   A  VL  LA   +   AI  E   
Sbjct: 444 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 503

Query: 612 PVLVEVVELGSARGKENAAAALLQL 636
             L E++   +      AAA L ++
Sbjct: 504 APLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.6 bits (215), Expect = 9e-19
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 3/138 (2%)

Query: 446 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA-NAIEPLIHVLQT-GSPEA 503
            AI  L  +L+  +  +   A   +  LS  + ++ AI  +   +  ++  +Q     E 
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 504 RENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENK 562
               A TL +LS   +  + I +SG I  LV +LG+        A T L NL ++    K
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 563 ARIVQAGAVKHLVDLMDP 580
             +  AG ++ +V L++ 
Sbjct: 137 MAVRLAGGLQKMVALLNK 154

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 6e-17
 Identities = 52/282 (18%), Positives = 92/282 (32%), Gaps = 26/282 (9%)

Query: 402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETK 461
           +E  +  LV+ L S  ++    A   L  L  +N  N+M++   G I  LV  +  +  +
Sbjct: 264 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 323

Query: 462 IQENAVTALLNLSI------NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSL- 514
                        +       +  ++A+     +  ++ +L   S      A   L    
Sbjct: 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 383

Query: 515 SVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHL 574
           ++   N   +   GAI  LV LL       ++  +            +   +        
Sbjct: 384 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI-------- 435

Query: 575 VDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 634
                     V+     L  LA     R+ I   N IP+ V+++       +  AA  L 
Sbjct: 436 ----------VEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485

Query: 635 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 676
           +L  +       +  EGA  PL  L  S        A A+L 
Sbjct: 486 ELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.4 bits (191), Expect = 9e-16
 Identities = 46/220 (20%), Positives = 80/220 (36%), Gaps = 7/220 (3%)

Query: 469 ALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS- 527
           A++NL IN  + + +A   AI  L  +L          AA  +  LS  E ++  I RS 
Sbjct: 1   AVVNL-INYQDDAELAT-RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58

Query: 528 GAIGPLVDLLGN-GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD-LMDPAAGMV 585
             +  +V  + N       +  A  L NLS + E    I ++G +  LV  L  P   ++
Sbjct: 59  QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 118

Query: 586 DKAVAVLANLATIPDGRVAIGQENG-IPVLVEVVELGSARGKENAAAALLQLCTNSSRFC 644
             A+  L NL    +G     +  G +  +V ++   + +        L  L   +    
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178

Query: 645 SMVLQEGAVPPLV-ALSQSGTPRAKEKAQALLSYFRNQRH 683
            ++L  G    LV  +      +       +L        
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 218

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 7e-10
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 465
           +   V+ L S   + QR A   L  LA  + +    I   GA   L ++LHS    +   
Sbjct: 462 IPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATY 520

Query: 466 AVTALLNLS 474
           A   L  +S
Sbjct: 521 AAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 8e-04
 Identities = 53/322 (16%), Positives = 98/322 (30%), Gaps = 49/322 (15%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 465
           +  LV+ L S        A   L  L  H    +M +   G +  +V +L+ +  K    
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 162

Query: 466 AVTALLNLSINDNNKSAIANANAIEPLIHVL--QTGSPEARENAAATLFSLSVIEDNKIK 523
               L  L+  +     I  A+     +  +       +     +  L  LSV   NK  
Sbjct: 163 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA 222

Query: 524 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN---------------------- 561
           I  +G +  L   L + + R  ++    L NLS                           
Sbjct: 223 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINV 282

Query: 562 ------------------KARIVQAGAVKHLVDLMDPAAGMVDKAVAVL-------ANLA 596
                             K  + Q G ++ LV  +  A    D     +       +   
Sbjct: 283 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 342

Query: 597 TIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPL 656
                + A+    G+PV+V+++   S      A   L++         + + ++GA+P L
Sbjct: 343 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 402

Query: 657 VALSQSGTPRAKEKAQALLSYF 678
           V L        + +     +  
Sbjct: 403 VQLLVRAHQDTQRRTSMGGTQQ 424

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.1 bits (237), Expect = 1e-21
 Identities = 45/299 (15%), Positives = 86/299 (28%), Gaps = 34/299 (11%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 465
           + K V+ L S     Q      ++     +   +  +   G I  LVD+L S    +Q+ 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 466 AVTALLNLSI-NDNNKSAIANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIK 523
           A  AL NL   +  NK      N I   + +  +TG+ E ++     L++LS  ++ K +
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 524 IGRSGAI---------------GPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV-Q 567
           +                     G          P    +A   L NLS     +  +   
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183

Query: 568 AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG------ 621
           +G +  L+  +             + N   +                 ++          
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243

Query: 622 ----------SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEK 670
                     S +   N     L     + +    +    A+   + L       A  +
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (199), Expect = 7e-17
 Identities = 41/305 (13%), Positives = 91/305 (29%), Gaps = 32/305 (10%)

Query: 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKI 462
                      +    +    AT  LR L+  +   + +    G I+ L+  + +     
Sbjct: 142 GWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAAS 201

Query: 463 Q------ENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ----------TGSPEAREN 506
           +      EN +  L NLS   + +             +                     N
Sbjct: 202 RCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNN 261

Query: 507 AAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE------ 560
               L            +  S AI   ++L+G        +A           +      
Sbjct: 262 YDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321

Query: 561 -NKARIVQAGAVKHLVDLMDPAAGMVDK-AVAVLANLATIPDGRVAIGQENGIPVLVEVV 618
            ++   ++   +  +  L+      V +   ++L+N++  P     +G +   P +  ++
Sbjct: 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQ-VFPEVTRLL 380

Query: 619 ELG------SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS-GTPRAKEKA 671
                    S     +A   +  L  +  +          +  ++ L +S  +P+A E A
Sbjct: 381 TSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440

Query: 672 QALLS 676
           + LLS
Sbjct: 441 RLLLS 445

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (196), Expect = 2e-16
 Identities = 22/169 (13%), Positives = 59/169 (34%), Gaps = 15/169 (8%)

Query: 406 VRKLVEDLKSTSLDTQREATAELRLLAKHN------MDNRMVIANCGAINILVDMLHSSE 459
           +R  +  +  +  D   EA A        +        ++++      +  +  +L S  
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344

Query: 460 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG------SPEARENAAATLFS 513
           + +  +  + L N+S +      + N      +  +L +       S +   +A  T+ +
Sbjct: 345 SDVVRSGASLLSNMSRHPLLHRVMGNQ-VFPEVTRLLTSHTGNTSNSEDILSSACYTVRN 403

Query: 514 LSVI-EDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLSIYHE 560
           L         +   S  +  +++L   + +P+  + A   L ++    E
Sbjct: 404 LMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 5e-07
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 3/86 (3%)

Query: 401 GIETQVRKLVED--LKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS 458
                 R L       S S D    A   +R L            +   +N ++++  SS
Sbjct: 372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS 431

Query: 459 ET-KIQENAVTALLNLSINDNNKSAI 483
            + K  E A   L ++  +   +  +
Sbjct: 432 ASPKAAEAARLLLSDMWSSKELQGVL 457

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 14/65 (21%), Positives = 23/65 (35%)

Query: 611 IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEK 670
           IP  V+ +     + +   A  +   C         V Q G +  LV L +S     ++ 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 671 AQALL 675
           A   L
Sbjct: 64  AAGAL 68

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.2 bits (209), Expect = 6e-18
 Identities = 59/287 (20%), Positives = 117/287 (40%), Gaps = 7/287 (2%)

Query: 399 LSGIETQVRKLVEDLKSTSLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHS 457
            S ++ ++ ++ + L S  +  Q  AT + R +L++ +     V+   G +  LV+ +  
Sbjct: 71  YSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE 130

Query: 458 SET-KIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLS 515
           ++   +Q  A  AL N+ S        + +A+A+   I +L TGS E +E A   L +++
Sbjct: 131 NQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA 190

Query: 516 VI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARI-VQAGAVKH 573
               D +  + +  A+ P++ L  +  P   + A   L NL    + +    V + A+  
Sbjct: 191 GDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT 250

Query: 574 LVDLMDPAAGMVDKAVA--VLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAA 631
           L  L+              +        +   A+        LVE++   S   +  A  
Sbjct: 251 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALR 310

Query: 632 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 678
           A+  + T +     +V+  G +P L  L  S     K++A   +S  
Sbjct: 311 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 357

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 17/183 (9%)

Query: 414 KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNL 473
              S   Q  A   +  +   N     V+ N G +  L  +L S +  I++ A   + N+
Sbjct: 298 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 357

Query: 474 SI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR----SG 528
           +  N     A+ +AN I PL+ +L+    + ++ A   + + S     +  I R     G
Sbjct: 358 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 417

Query: 529 AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR------------IVQAGAVKHLVD 576
            I PL DLL     R  +    AL N+    E                I +AG ++ + +
Sbjct: 418 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 477

Query: 577 LMD 579
              
Sbjct: 478 CQQ 480

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 15/109 (13%)

Query: 414 KSTSLDTQREATAELRLLAKHNMDNRMVI---ANCGAINILVDMLHSSETKIQENAVTAL 470
           +     T++EA   +   +   +    +I    + G I  L D+L  ++ +I E  + AL
Sbjct: 382 EVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL 441

Query: 471 LNL------------SINDNNKSAIANANAIEPLIHVLQTGSPEARENA 507
            N+               + N   I  A  +E + +  Q  + +  E A
Sbjct: 442 ENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKA 490

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.4 bits (187), Expect = 8e-18
 Identities = 26/71 (36%), Positives = 35/71 (49%)

Query: 97  IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 156
           IP   C  +S ELM +P I  SG TY+R  I++ +       P TR  L    LIPN  +
Sbjct: 4   IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 63

Query: 157 KALIANWCELN 167
           K +I  +   N
Sbjct: 64  KEVIDAFISEN 74

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.6 bits (197), Expect = 1e-16
 Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 6/200 (3%)

Query: 393 AETRADLSGIETQVRKLVEDLKSTSLDTQREATAELR-LLAKHNMDNRMVIANCGAINIL 451
           A+  ++   +   V  +V+ + S +L++Q +AT   R LL++        I   G I   
Sbjct: 2   ADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKF 61

Query: 452 VDMLHSSE-TKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAA 509
           V  L  ++ + IQ  +  AL N+ S       A+ +  AI   I +L +      E A  
Sbjct: 62  VSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVW 121

Query: 510 TLFSLSVIEDNKIK-IGRSGAIGPLVDLLGNGTPRGKKDAA--TALFNLSIYHENKARIV 566
            L +++         + + GAI PL+ LL                 + LS    NK    
Sbjct: 122 ALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP 181

Query: 567 QAGAVKHLVDLMDPAAGMVD 586
              AV+ ++  +       D
Sbjct: 182 PLDAVEQILPTLVRLLHHND 201

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.0 bits (141), Expect = 9e-10
 Identities = 54/282 (19%), Positives = 99/282 (35%), Gaps = 11/282 (3%)

Query: 406 VRKLVEDLKSTSL-DTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 464
           + K V  L  T     Q E+   L  +A    +    + + GAI   + +L S    I E
Sbjct: 58  IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 117

Query: 465 NAVTALLNL-SINDNNKSAIANANAIEPLIHVL-----QTGSPEARENAAATLFSLSVI- 517
            AV AL N+       +  +    AI+PL+ +L      T +     N   TL +L    
Sbjct: 118 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 177

Query: 518 EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARI-VQAGAVKHLVD 576
                       +  LV LL +  P    D+  A+  L+     +  + V+ G V  LV 
Sbjct: 178 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 237

Query: 577 LMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 634
           L+       +     A+   +    +    +     + V   ++       ++ A   + 
Sbjct: 238 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 297

Query: 635 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 676
            +          V+  G VP LV +      + +++A   ++
Sbjct: 298 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT 339

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.8 bits (130), Expect = 2e-08
 Identities = 31/180 (17%), Positives = 70/180 (38%), Gaps = 10/180 (5%)

Query: 410 VEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTA 469
           V+ L +T L     A   +  +     +    + + GA+ +   +L + +T IQ+ A   
Sbjct: 236 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 295

Query: 470 LLNLSINDNN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIGR 526
           + N++    +    + N   +  L+ VL     + ++ AA  + + +     +  + +  
Sbjct: 296 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 355

Query: 527 SGAIGPLVDLLGNGTPRGKKDAATALFNL-----SIYHENKAR--IVQAGAVKHLVDLMD 579
            G I PL++LL     +  +    A+ N+      +    K    I + G +  +  L  
Sbjct: 356 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 415

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 11/120 (9%)

Query: 405 QVRKLVEDLKSTSLDTQREATAELRLLAKH-NMDNRMVIANCGAINILVDMLHSSETKIQ 463
            V  LV  L      TQ+EA   +        ++  + + +CG I  L+++L + +TKI 
Sbjct: 315 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 374

Query: 464 ENAVTALLNL-------SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATL---FS 513
           +  + A+ N+          +     I     ++ +  + +  +    + +   +   FS
Sbjct: 375 QVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 434

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.5 bits (111), Expect = 4e-06
 Identities = 44/280 (15%), Positives = 103/280 (36%), Gaps = 13/280 (4%)

Query: 412 DLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALL 471
           DL + +    R  T  L  L ++      + A    +  LV +LH ++ ++  ++  A+ 
Sbjct: 154 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 213

Query: 472 NLSINDNNK--SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGA 529
            L+   N +    +      + +  +  T  P       A    ++  ++   K+  +GA
Sbjct: 214 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 273

Query: 530 IGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-DPAAGMVDK 587
           +     LL N     +K+A   + N++    +   ++V  G V  LV ++         +
Sbjct: 274 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 333

Query: 588 AVAVLANLAT--IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT------N 639
           A   + N  +    +  V +     I  L+ ++     +  +    A+  +         
Sbjct: 334 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 393

Query: 640 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS-YF 678
           + +   M+ + G +  + AL +       + +  L+  YF
Sbjct: 394 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 433

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (101), Expect = 6e-05
 Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 41/154 (26%)

Query: 527 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR--IVQAGAVKHLVDLMDPAAGM 584
           + ++  +V  + +     +  A  A   L    +      I++AG +   V  +      
Sbjct: 12  NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL------ 65

Query: 585 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC 644
                                G+ +  P+            +  +A AL  + + +S   
Sbjct: 66  ---------------------GKTDCSPI------------QFESAWALTNIASGTSEQT 92

Query: 645 SMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 678
             V+  GA+P  ++L  S      E+A   L   
Sbjct: 93  KAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 126

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 1e-11
 Identities = 40/243 (16%), Positives = 80/243 (32%), Gaps = 7/243 (2%)

Query: 408 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVD-MLHSSETKIQENA 466
              E  ++     +  A   L  L   NMDN         +++LV   L +    ++  A
Sbjct: 21  TAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 79

Query: 467 VTALLNLS-INDNNKSAIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKI 524
              +   S      +  +    A+  L+ +L        R  A   +  L   ++  +  
Sbjct: 80  AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 139

Query: 525 GRSGAIGPLV-DLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM-DPA 581
                   ++   +     + K  +A  L NL + H E+K  +   G V+ LV L+    
Sbjct: 140 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH 199

Query: 582 AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 641
           +   +  +  L +L T     V   +E  + +   +        +       L+ C    
Sbjct: 200 SPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLL 259

Query: 642 RFC 644
           + C
Sbjct: 260 QTC 262

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 2e-11
 Identities = 39/251 (15%), Positives = 86/251 (34%), Gaps = 6/251 (2%)

Query: 436 MDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIH- 494
           M + + + +        +   +++ + +E A+  L +L  N +N +     + +  L+  
Sbjct: 7   MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGR 66

Query: 495 VLQTGSPEARENAAATLFSLS-VIEDNKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATAL 552
            L+ G+   R  AA  + + S  +   + ++   GA+  L+ LL        +  A  A+
Sbjct: 67  YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAI 126

Query: 553 FNLSIYHENKA---RIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQEN 609
             L    E        +   +V             V  A  +   L   P+ +  +    
Sbjct: 127 SCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 186

Query: 610 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKE 669
            +  LV +V    +   E+   AL  L T+  +      +       +   +    +  E
Sbjct: 187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHE 246

Query: 670 KAQALLSYFRN 680
           + Q  L +   
Sbjct: 247 EYQEELEFCEK 257

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 2e-11
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 97  IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKTRQTLAHTTLIPNY 154
           +     CP+ LEL+ +PV       + +  + K ++   G   CP  +  +   +L  + 
Sbjct: 18  MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77

Query: 155 TVKALIANWCEL 166
               L+    ++
Sbjct: 78  RFSQLVEELLKI 89

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 1e-09
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 97  IPSDFCCPLSLELMTDPVIVASGQ-TYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYT 155
              +F  P+   LM DPV++ S + T +R+ I + +       P  R  L    + PN  
Sbjct: 19  ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLL-SDQTDPFNRSPLTMDQIRPNTE 77

Query: 156 VKALIANWCE 165
           +K  I  W  
Sbjct: 78  LKEKIQRWLA 87

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 6e-08
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 84  VMIKQSQICSPVPIPSDF-CCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTR 142
           + + Q Q      + S F  C +  E   D  I   G     + +  W +     CP  R
Sbjct: 6   IKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 65

Query: 143 QTLAHTTLIP 152
             +  T  I 
Sbjct: 66  CEIKGTEPIV 75

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (109), Expect = 4e-07
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 94  PVPIPSDF----CCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 149
            V  P+ F     C +   ++ DPV  +    + R  I + + +    CP  R     T 
Sbjct: 13  AVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72

Query: 150 LIPNYTVKALI 160
           L     VK+ +
Sbjct: 73  LESP--VKSFL 81

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.4 bits (99), Expect = 4e-06
 Identities = 9/55 (16%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 102 CCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYT 155
            C +S ++   PV+   S   +E++ +++++       P T + L+   ++    
Sbjct: 2   LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVK-DTGNDPITNEPLSIEEIVEIVP 55

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 29/194 (14%), Positives = 54/194 (27%), Gaps = 29/194 (14%)

Query: 405  QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 464
            +    V    ++    Q      L+ +        +         +L+     +E   + 
Sbjct: 887  EYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRN 946

Query: 465  NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 524
                 L  L++       I     +  L   L +GS  AR +    +          I  
Sbjct: 947  VVAECLGKLTL-------IDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDP 999

Query: 525  GRSGAIGPLVDLLGNGTPRGKKDAATALFNLS-----------------IYHENKA---- 563
                 IG  +  L +     ++ A     + +                 +Y+E K     
Sbjct: 1000 LLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKEL 1059

Query: 564  -RIVQAGAVKHLVD 576
             R V+ G  KH VD
Sbjct: 1060 IREVEMGPFKHTVD 1073

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	689
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.97
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.97
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.97
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.88
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.88
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.86
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.85
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.83
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.49
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.45
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.42
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.35
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.34
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.34
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.29
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	99.2
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.16
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.15
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.07
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.01
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.99
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.86
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.84
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.81
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.76
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.74
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.73
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.67
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.58
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.5
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.46
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.44
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.44
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.42
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.37
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.37
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.31
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.17
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.1
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.95
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.68
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.49
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.13
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.11
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.69
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.06
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	90.6

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-29  Score=191.56  Aligned_cols=277  Identities=21%  Similarity=0.214  Sum_probs=151.0

Q ss_pred             HHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC-CCCHH
Q ss_conf             599999999339-9999999999999996314903089999539399999965389999999999999995169-83089
Q 005598          404 TQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS  481 (689)
Q Consensus       404 ~~I~~Li~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Li~lL~s~~~~v~e~Al~aL~nLs~~-~~~k~  481 (689)
                      +.++.|+..++. .+..++..|+++|.+++..++.....+...|+++.|+.+|.+.+.++++.++++|+|++.+ +..+.
T Consensus       119 g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~  198 (503)
T d1wa5b_         119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD  198 (503)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98499999871799999999999999999749888779999678747899985599715899999999998541189999


Q ss_pred             HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHH-HHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCH-
Q ss_conf             999718999999977479999999999999850168325-889885087599998504999889999999999631230-
Q 005598          482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-  559 (689)
Q Consensus       482 ~i~~~g~i~~Li~lL~s~~~~~r~~Aa~aL~nLs~~~~~-k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~-  559 (689)
                      .+...|+++.|+.++.+....++..++++|.+++..... .......++++.|+.++.+.+..++..++++|.+|+... 
T Consensus       199 ~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~  278 (503)
T d1wa5b_         199 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ  278 (503)
T ss_dssp             HHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH
T ss_pred             HHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             88741355630120456888999999999999846874204799999999999987235638999999999875322771


Q ss_pred             HHHHHHHHHCCHHHHHHHC-CCCHHHHHHHHHHHHHHHCCCHH-HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             7899999827099999813-99947999999999998279015-999995694999999960699999999999999994
Q 005598          560 ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC  637 (689)
Q Consensus       560 ~n~~~iv~~G~v~~Lv~LL-~~~~~i~e~Al~~L~nLa~~~~~-r~~i~~~g~i~~Lv~lL~s~s~~~~e~Av~aL~~L~  637 (689)
                      +....+++.|+++.|+.++ +.+..+...++.+|.+++...+. ...+.+.|+++.|..++.+.++.++..++++|.+++
T Consensus       279 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~  358 (503)
T d1wa5b_         279 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT  358 (503)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             11100112233111011025786364456777777787788887876312340999999963997888999987788886


Q ss_pred             HCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             0898659999948996989992506998999999999999460
Q 005598          638 TNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       638 ~~~~~~~~~iv~~g~i~~L~~LL~~~~~~vk~~A~~lL~~L~~  680 (689)
                      ..++.....+++.|+++.|+.++..++..++..|.++|..+..
T Consensus       359 ~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~  401 (503)
T d1wa5b_         359 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS  401 (503)
T ss_dssp             TSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HCCHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             1469888999971465236776026873689999999999973

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.8e-29  Score=193.45  Aligned_cols=273  Identities=23%  Similarity=0.230  Sum_probs=233.4

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC-CCCHH
Q ss_conf             55999999993399999999999999996314903089999539399999965389999999999999995169-83089
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS  481 (689)
Q Consensus       403 ~~~I~~Li~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Li~lL~s~~~~v~e~Al~aL~nLs~~-~~~k~  481 (689)
                      .+.++.|+..+.+++..++..+++.+.+++.....   .....|+++.|+.++.+++..++..++.+|.+++.+ +.++.
T Consensus       226 ~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~---~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  302 (529)
T d1jdha_         226 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM  302 (529)
T ss_dssp             TTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC---HHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             43334699986254015553015677750432110---256640101445412454288999999988750122037888


Q ss_pred             HHHHCCCHHHHHHHHC--CCCHHHHHHHHHHHHHCCCCCH----HHHHHHHHCCHHHHHHHHCCC-CHHHHHHHHHHHHH
Q ss_conf             9997189999999774--7999999999999985016832----588988508759999850499-98899999999996
Q 005598          482 AIANANAIEPLIHVLQ--TGSPEARENAAATLFSLSVIED----NKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFN  554 (689)
Q Consensus       482 ~i~~~g~i~~Li~lL~--s~~~~~r~~Aa~aL~nLs~~~~----~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~n  554 (689)
                      .+.+.++++.|+.++.  .+..+++..++.+|++++....    .+..+...++++.|+.++..+ .......++++|.|
T Consensus       303 ~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~  382 (529)
T d1jdha_         303 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN  382 (529)
T ss_dssp             HHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             88875007899999984001113788999885002200000003566677645612478987153127899999998750


Q ss_pred             HHHCHHHHHHHHHHCCHHHHHHHCC-CC----------------------HHHHHHHHHHHHHHHCCCHHHHHHHHCCCH
Q ss_conf             3123078999998270999998139-99----------------------479999999999982790159999956949
Q 005598          555 LSIYHENKARIVQAGAVKHLVDLMD-PA----------------------AGMVDKAVAVLANLATIPDGRVAIGQENGI  611 (689)
Q Consensus       555 Ls~~~~n~~~iv~~G~v~~Lv~LL~-~~----------------------~~i~e~Al~~L~nLa~~~~~r~~i~~~g~i  611 (689)
                      ++.+.+++..+.+.|+++.|++++. ..                      .++++.++++|..++..+..+..+...+++
T Consensus       383 l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i  462 (529)
T d1jdha_         383 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTI  462 (529)
T ss_dssp             HTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH
T ss_conf             00035666666532657999999866788999999860346776412131999999999999984498889999978889


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             99999960699999999999999994089865999994899698999250699899999999999946
Q 005598          612 PVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR  679 (689)
Q Consensus       612 ~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~iv~~g~i~~L~~LL~~~~~~vk~~A~~lL~~L~  679 (689)
                      +.|+.+|.+.++.++..|+.+|++|+.+ ++.++.+.+.|+++.|..++.++++.+++.|..+|..|+
T Consensus       463 ~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~ls  529 (529)
T d1jdha_         463 PLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHCC-HHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf             9999986799989999999999998659-466999998888999999857999999999999999749

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.4e-30  Score=197.22  Aligned_cols=276  Identities=19%  Similarity=0.219  Sum_probs=208.3

Q ss_pred             HHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             5599999999339-999999999999999631490308999953939999996538999999999999999516983089
Q 005598          403 ETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS  481 (689)
Q Consensus       403 ~~~I~~Li~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Li~lL~s~~~~v~e~Al~aL~nLs~~~~~k~  481 (689)
                      .+.++.|+..+.. .....+..++..+.+++. +++++..+.+.|+++.|+.++.+.+.+++..++++|.+++.....  
T Consensus       184 ~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~--  260 (529)
T d1jdha_         184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--  260 (529)
T ss_dssp             TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT--
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC--
T ss_conf             05636899999861048999999998751101-332330456543334699986254015553015677750432110--


Q ss_pred             HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHCCHHHHHHHHC--CCCHHHHHHHHHHHHHHHHC
Q ss_conf             99971899999997747999999999999985016-8325889885087599998504--99988999999999963123
Q 005598          482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLG--NGTPRGKKDAATALFNLSIY  558 (689)
Q Consensus       482 ~i~~~g~i~~Li~lL~s~~~~~r~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~--~~~~~v~~~Al~aL~nLs~~  558 (689)
                      .....|+++.|+.++.+++..++..++.+|++++. .++++..+.+.++++.|+.++.  .+...++..++.+|.+|+..
T Consensus       261 ~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~  340 (529)
T d1jdha_         261 QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  340 (529)
T ss_dssp             CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCH
T ss_conf             25664010144541245428899999998875012203788888875007899999984001113788999885002200


Q ss_pred             HH----HHHHHHHHCCHHHHHHHCC--CCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCC----------
Q ss_conf             07----8999998270999998139--9947999999999998279015999995694999999960699----------
Q 005598          559 HE----NKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS----------  622 (689)
Q Consensus       559 ~~----n~~~iv~~G~v~~Lv~LL~--~~~~i~e~Al~~L~nLa~~~~~r~~i~~~g~i~~Lv~lL~s~s----------  622 (689)
                      ..    .+..+...++++.|+.++.  ....+...+++++.+++.+++.+..+.+.|+++.|+.+|.+..          
T Consensus       341 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~  420 (529)
T d1jdha_         341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG  420 (529)
T ss_dssp             STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred             HHCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             00000356667764561247898715312789999999875000035666666532657999999866788999999860


Q ss_pred             ------------HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             ------------999999999999994089865999994899698999250699899999999999946085
Q 005598          623 ------------ARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR  682 (689)
Q Consensus       623 ------------~~~~e~Av~aL~~L~~~~~~~~~~iv~~g~i~~L~~LL~~~~~~vk~~A~~lL~~L~~~~  682 (689)
                                  ....+.++.+|..++.. ...+..+.+.|+++.|+.++.++++.+++.|..+|..|....
T Consensus       421 ~~~~~~~~~~~~~~~~~~~~~al~~la~~-~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~  491 (529)
T d1jdha_         421 GTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK  491 (529)
T ss_dssp             -----CBTTBCHHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHCCC-HHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCH
T ss_conf             34677641213199999999999998449-888999997888999999867999899999999999986594

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.7e-27  Score=180.28  Aligned_cols=280  Identities=19%  Similarity=0.206  Sum_probs=242.8

Q ss_pred             CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC-C
Q ss_conf             001559999999933999999999999999963149030899995393999999653899999999999999951698-3
Q 005598          400 SGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND-N  478 (689)
Q Consensus       400 ~~~~~~I~~Li~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Li~lL~s~~~~v~e~Al~aL~nLs~~~-~  478 (689)
                      ....+.++.++.+|.+++.+++..|+++|.+++..++.+|..+.+.|+++.|+.++...+..++..++++|.+++.+. .
T Consensus       158 ~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~  237 (503)
T d1wa5b_         158 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP  237 (503)
T ss_dssp             HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             99678747899985599715899999999998541189999887413556301204568889999999999998468742


Q ss_pred             CHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-HHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             0899997189999999774799999999999998501683-258898850875999985049998899999999996312
Q 005598          479 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI  557 (689)
Q Consensus       479 ~k~~i~~~g~i~~Li~lL~s~~~~~r~~Aa~aL~nLs~~~-~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~  557 (689)
                      ........++++.|+.++.+.+.+++..++++|.+++... +....+.+.|+++.|+.++.+++..++..++.+|.+++.
T Consensus       238 ~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~  317 (503)
T d1wa5b_         238 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT  317 (503)
T ss_dssp             CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             04799999999999987235638999999999875322771111001122331110110257863644567777777877


Q ss_pred             CHH-HHHHHHHHCCHHHHHHHC-CCCHHHHHHHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             307-899999827099999813-99947999999999998279-015999995694999999960699999999999999
Q 005598          558 YHE-NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL  634 (689)
Q Consensus       558 ~~~-n~~~iv~~G~v~~Lv~LL-~~~~~i~e~Al~~L~nLa~~-~~~r~~i~~~g~i~~Lv~lL~s~s~~~~e~Av~aL~  634 (689)
                      ..+ ....++..|+++.|..++ +++..++..++++|+|++.+ +.....+.+.++++.++.++.+.+..++..|+++|.
T Consensus       318 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~  397 (503)
T d1wa5b_         318 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS  397 (503)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             88887876312340999999963997888999987788886146988899997146523677602687368999999999


Q ss_pred             HHHHCC---HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             994089---865999994899698999250699899999999999946
Q 005598          635 QLCTNS---SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR  679 (689)
Q Consensus       635 ~L~~~~---~~~~~~iv~~g~i~~L~~LL~~~~~~vk~~A~~lL~~L~  679 (689)
                      +++...   ......+++.|+++.|+.++...+.++...+..+|..+-
T Consensus       398 nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll  445 (503)
T d1wa5b_         398 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL  445 (503)
T ss_dssp             HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             997365354899999998976999999865998899999999999999

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.1e-27  Score=182.53  Aligned_cols=276  Identities=20%  Similarity=0.246  Sum_probs=178.7

Q ss_pred             HHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC-CCCHH
Q ss_conf             599999999339-9999999999999996314903089999539399999965389999999999999995169-83089
Q 005598          404 TQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS  481 (689)
Q Consensus       404 ~~I~~Li~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Li~lL~s~~~~v~e~Al~aL~nLs~~-~~~k~  481 (689)
                      +.++.|+++|++ .++++|..++++|.+++..+++.+..+.+.|+++.|+.+|.+++..+++.++++|.|++.+ +..+.
T Consensus        56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~  135 (434)
T d1q1sc_          56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD  135 (434)
T ss_dssp             TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             89999999874699889999999999998639855104766446315666403568799999999999988500168999


Q ss_pred             HHHHC-----------------------------------------------CCHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             99971-----------------------------------------------8999999977479999999999999850
Q 005598          482 AIANA-----------------------------------------------NAIEPLIHVLQTGSPEARENAAATLFSL  514 (689)
Q Consensus       482 ~i~~~-----------------------------------------------g~i~~Li~lL~s~~~~~r~~Aa~aL~nL  514 (689)
                      .+...                                               +.++.|+.++.+++.+++..++++|.++
T Consensus       136 ~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l  215 (434)
T d1q1sc_         136 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL  215 (434)
T ss_dssp             HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
T ss_conf             99986300589999872232100189999999999888642642211443656999999998524420125677664022


Q ss_pred             CCCCH-HHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-HHHHHHHHHHCCHHHHHHHC-CCCHHHHHHHHHH
Q ss_conf             16832-588988508759999850499988999999999963123-07899999827099999813-9994799999999
Q 005598          515 SVIED-NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAV  591 (689)
Q Consensus       515 s~~~~-~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~~n~~~iv~~G~v~~Lv~LL-~~~~~i~e~Al~~  591 (689)
                      +.... ....+...|+++.|+.++.+++..++..++.+|.+++.. +..+..+++.|+++.|+.++ +.+.+++..++++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~  295 (434)
T d1q1sc_         216 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT  295 (434)
T ss_dssp             TSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHH
T ss_conf             01234567777631542010000234306554021221356776666778999852564057776136414666888878


Q ss_pred             HHHHHCC-CHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
Q ss_conf             9998279-01599999569499999996069999999999999999408-986599999489969899925069989999
Q 005598          592 LANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN-SSRFCSMVLQEGAVPPLVALSQSGTPRAKE  669 (689)
Q Consensus       592 L~nLa~~-~~~r~~i~~~g~i~~Lv~lL~s~s~~~~e~Av~aL~~L~~~-~~~~~~~iv~~g~i~~L~~LL~~~~~~vk~  669 (689)
                      |.+++.. .+....+.+.|+++.++.++.+.+..++..|+++|.+++.. +.+....+.+.|+++.|+.++...++++..
T Consensus       296 L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~  375 (434)
T d1q1sc_         296 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ  375 (434)
T ss_dssp             HHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHH
T ss_conf             86520045045777766546899998775158688999999999998349999999999897699999986599989999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999946
Q 005598          670 KAQALLSYFR  679 (689)
Q Consensus       670 ~A~~lL~~L~  679 (689)
                      .+.++|..+-
T Consensus       376 ~~l~~l~~ll  385 (434)
T d1q1sc_         376 VILDAISNIF  385 (434)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.2e-27  Score=179.83  Aligned_cols=232  Identities=15%  Similarity=0.187  Sum_probs=142.2

Q ss_pred             CCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC-CHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-HHHHH
Q ss_conf             939999996538999999999999999516983-0899997189999999774799999999999998501683-25889
Q 005598          446 GAINILVDMLHSSETKIQENAVTALLNLSINDN-NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIK  523 (689)
Q Consensus       446 g~I~~Li~lL~s~~~~v~e~Al~aL~nLs~~~~-~k~~i~~~g~i~~Li~lL~s~~~~~r~~Aa~aL~nLs~~~-~~k~~  523 (689)
                      ++++.|+.++.+.+.+++..++++|.+++.+.. ....+...|+++.|+.++.+++..++..++.+|.+++... +.+..
T Consensus       188 ~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~  267 (434)
T d1q1sc_         188 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK  267 (434)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf             69999999985244201256776640220123456777763154201000023430655402122135677666677899


Q ss_pred             HHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-HHHHHHHHHHCCHHHHHHHC-CCCHHHHHHHHHHHHHHHCC--C
Q ss_conf             88508759999850499988999999999963123-07899999827099999813-99947999999999998279--0
Q 005598          524 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI--P  599 (689)
Q Consensus       524 I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~~n~~~iv~~G~v~~Lv~LL-~~~~~i~e~Al~~L~nLa~~--~  599 (689)
                      +.+.|+++.|+.++.+.+..++..++++|.+|+.. .+....+.+.|+++.++.++ +.+..++..|+++|.+++..  .
T Consensus       268 ~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~  347 (434)
T d1q1sc_         268 VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV  347 (434)
T ss_dssp             HHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCH
T ss_conf             98525640577761364146668888788652004504577776654689999877515868899999999999834999


Q ss_pred             HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC------HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             15999995694999999960699999999999999994089------865999994899698999250699899999999
Q 005598          600 DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS------SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQA  673 (689)
Q Consensus       600 ~~r~~i~~~g~i~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~------~~~~~~iv~~g~i~~L~~LL~~~~~~vk~~A~~  673 (689)
                      +....+.+.|+++.|+.++...++.....++.+|.+++...      ...+..+.+.|+++.|-.|..+.++.+++.|..
T Consensus       348 ~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~  427 (434)
T d1q1sc_         348 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLN  427 (434)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99999998976999999865999899999999999999988754774899999998687999999886998999999999


Q ss_pred             HHHH
Q ss_conf             9999
Q 005598          674 LLSY  677 (689)
Q Consensus       674 lL~~  677 (689)
                      +|..
T Consensus       428 il~~  431 (434)
T d1q1sc_         428 LIEK  431 (434)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             9999

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-26  Score=175.26  Aligned_cols=282  Identities=20%  Similarity=0.272  Sum_probs=219.4

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CCCCHHH
Q ss_conf             599999999339999999999999999631490308999953939999996538999999999999999516-9830899
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSA  482 (689)
Q Consensus       404 ~~I~~Li~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Li~lL~s~~~~v~e~Al~aL~nLs~-~~~~k~~  482 (689)
                      ..||.|+++|+++++++|..|++.|.+|+..++++|..+.+.|+||.|+.+|.+++.+++..|+++|.+|+. +++++..
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             97899999857999999999999999998499999999998885999999877999899999999999997499888999


Q ss_pred             HHHCCCHHHHHHHHCC-CCHHHHHHHHHHHHHCCCCCHH-----------------------------------------
Q ss_conf             9971899999997747-9999999999999850168325-----------------------------------------
Q 005598          483 IANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDN-----------------------------------------  520 (689)
Q Consensus       483 i~~~g~i~~Li~lL~s-~~~~~r~~Aa~aL~nLs~~~~~-----------------------------------------  520 (689)
                      +.+.|+++.|+.++.+ .+..++..++++|.+++..+..                                         
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHH
T ss_conf             99879828999998433738899999999999986413578888601078899987532211000035530214499999


Q ss_pred             ---------------HHHHHH-HCCHHHHHHHHCCC--------------------------------------------
Q ss_conf             ---------------889885-08759999850499--------------------------------------------
Q 005598          521 ---------------KIKIGR-SGAIGPLVDLLGNG--------------------------------------------  540 (689)
Q Consensus       521 ---------------k~~I~~-~g~I~~Lv~LL~~~--------------------------------------------  540 (689)
                                     +..+.. .|+++.|+.++.+.                                            
T Consensus       162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T d1xm9a1         162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999998736866789999870327999998724125444588999999987751235567888889999876442235


Q ss_pred             -------------------------------------------------------CHHHHHHHHHHHHHHHHCHH-----
Q ss_conf             -------------------------------------------------------98899999999996312307-----
Q 005598          541 -------------------------------------------------------TPRGKKDAATALFNLSIYHE-----  560 (689)
Q Consensus       541 -------------------------------------------------------~~~v~~~Al~aL~nLs~~~~-----  560 (689)
                                                                             +......+..++.+++....     
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  321 (457)
T d1xm9a1         242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             57876542000127888888764667753316777899860479999998733663578899999988886144000488


Q ss_pred             -HHHHHHHHCCHHHHHHHC-CCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCC------CCHHHHHHHHHH
Q ss_conf             -899999827099999813-999479999999999982790159999956949999999606------999999999999
Q 005598          561 -NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL------GSARGKENAAAA  632 (689)
Q Consensus       561 -n~~~iv~~G~v~~Lv~LL-~~~~~i~e~Al~~L~nLa~~~~~r~~i~~~g~i~~Lv~lL~s------~s~~~~e~Av~a  632 (689)
                       .+..+...|+++.|++++ +.+..+...++.+|.+|+.+++.+..+.+ ++++.|+.+|..      .++.++..|+.+
T Consensus       322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~  400 (457)
T d1xm9a1         322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYT  400 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             9999999839768897540375089999999999998607667999999-659999999855366767859999999999


Q ss_pred             HHHHHHCCHHHHHHHHHCCCHHHHHHHHHCC-CHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             9999408986599999489969899925069-98999999999999460858778
Q 005598          633 LLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRNQRHGNA  686 (689)
Q Consensus       633 L~~L~~~~~~~~~~iv~~g~i~~L~~LL~~~-~~~vk~~A~~lL~~L~~~~~~~~  686 (689)
                      |.+++..++..+..+++.|+++.|+.++.+. ++.+++.|..+|..|..+++-|+
T Consensus       401 L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~~  455 (457)
T d1xm9a1         401 VRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG  455 (457)
T ss_dssp             HHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred             HHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             9998617999999999888899999998689989999999999999974986474

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.4e-20  Score=139.30  Aligned_cols=190  Identities=21%  Similarity=0.249  Sum_probs=133.0

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHH-HHCCCCHHHHHHHHHHHHHHHCC-CCCHHHHHHCCCHHHHHH
Q ss_conf             9999999999999963149030899995393999999-65389999999999999995169-830899997189999999
Q 005598          417 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVD-MLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIH  494 (689)
Q Consensus       417 ~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Li~-lL~s~~~~v~e~Al~aL~nLs~~-~~~k~~i~~~g~i~~Li~  494 (689)
                      +.+.+..|+..|..|+. +..++..+...|+++.|+. ++.+.+.+++..|+++|.+++.+ +..+..+.+.|+++.|+.
T Consensus        30 ~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~  108 (264)
T d1xqra1          30 DQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  108 (264)
T ss_dssp             HHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHC-CHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             99999999999999976-97889999986999999999837999999999999999999888888899997276379999


Q ss_pred             HHCC-CCHHHHHHHHHHHHHCCCC-CHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH-CHHHHHHHHHHCCH
Q ss_conf             7747-9999999999999850168-3258898850875999985049998899999999996312-30789999982709
Q 005598          495 VLQT-GSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAV  571 (689)
Q Consensus       495 lL~s-~~~~~r~~Aa~aL~nLs~~-~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~~n~~~iv~~G~v  571 (689)
                      +|.+ .+..++..++++|.+++.. +.++..+...|+++.|+.++++++..++..++++|.+|+. .++++..++..|++
T Consensus       109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v  188 (264)
T d1xqra1         109 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV  188 (264)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             96049989999999999998742440267899872012688998805865788999999999874457788888876468


Q ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHHHC-CCHHHHHHHH
Q ss_conf             9999813-9994799999999999827-9015999995
Q 005598          572 KHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQ  607 (689)
Q Consensus       572 ~~Lv~LL-~~~~~i~e~Al~~L~nLa~-~~~~r~~i~~  607 (689)
                      +.|+.++ +++..+++.++++|.+|+. ++.....+..
T Consensus       189 ~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         189 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             99999973999899999999999998648899999987

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.7e-20  Score=135.23  Aligned_cols=159  Identities=14%  Similarity=0.163  Sum_probs=116.8

Q ss_pred             HHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHCCCCCH------HHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             999718999999977479-99999999999985016832------58898850875999985049998899999999996
Q 005598          482 AIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIED------NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN  554 (689)
Q Consensus       482 ~i~~~g~i~~Li~lL~s~-~~~~r~~Aa~aL~nLs~~~~------~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n  554 (689)
                      .+...++++.++.++... +...+..+.+++.+++....      .+..+...++++.|+.++.+.+..++..++.+|.+
T Consensus       278 ~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~  357 (457)
T d1xm9a1         278 WLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSN  357 (457)
T ss_dssp             GGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             99860479999998733663578899999988886144000488999999983976889754037508999999999999


Q ss_pred             HHHCHHHHHHHHHHCCHHHHHHHCC-------CCHHHHHHHHHHHHHHHC-CCHHHHHHHHCCCHHHHHHHHCC-CCHHH
Q ss_conf             3123078999998270999998139-------994799999999999827-90159999956949999999606-99999
Q 005598          555 LSIYHENKARIVQAGAVKHLVDLMD-------PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL-GSARG  625 (689)
Q Consensus       555 Ls~~~~n~~~iv~~G~v~~Lv~LL~-------~~~~i~e~Al~~L~nLa~-~~~~r~~i~~~g~i~~Lv~lL~s-~s~~~  625 (689)
                      |+.+++++..+. .++++.|+.+|.       ...++...++++|.+|+. +++.++.+.+.|+++.|+.++.+ .++.+
T Consensus       358 La~~~~~~~~i~-~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~  436 (457)
T d1xm9a1         358 MSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKA  436 (457)
T ss_dssp             HHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHCHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCHHH
T ss_conf             860766799999-9659999999855366767859999999999999861799999999988889999999868998999


Q ss_pred             HHHHHHHHHHHHHCCH
Q ss_conf             9999999999940898
Q 005598          626 KENAAAALLQLCTNSS  641 (689)
Q Consensus       626 ~e~Av~aL~~L~~~~~  641 (689)
                      ++.|+.+|++|+.+.+
T Consensus       437 ~~aA~~~L~~L~~~~~  452 (457)
T d1xm9a1         437 AEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHHHHCCHH
T ss_conf             9999999999974986

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.2e-20  Score=136.49  Aligned_cols=222  Identities=19%  Similarity=0.166  Sum_probs=181.6

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHH-HHCCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHCCHHHHH
Q ss_conf             89999999999999995169830899997189999999-77479999999999999850168-32588988508759999
Q 005598          457 SSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIH-VLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLV  534 (689)
Q Consensus       457 s~~~~v~e~Al~aL~nLs~~~~~k~~i~~~g~i~~Li~-lL~s~~~~~r~~Aa~aL~nLs~~-~~~k~~I~~~g~I~~Lv  534 (689)
                      +.+.+.+..|+.+|.+|+.+.+++..+...|++++++. +|++++.+++..|+.+|.+++.+ +..+..+...|+++.|+
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             79999999999999999769788999998699999999983799999999999999999988888889999727637999


Q ss_pred             HHHC-CCCHHHHHHHHHHHHHHHH-CHHHHHHHHHHCCHHHHHHHC-CCCHHHHHHHHHHHHHHHC-CCHHHHHHHHCCC
Q ss_conf             8504-9998899999999996312-307899999827099999813-9994799999999999827-9015999995694
Q 005598          535 DLLG-NGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENG  610 (689)
Q Consensus       535 ~LL~-~~~~~v~~~Al~aL~nLs~-~~~n~~~iv~~G~v~~Lv~LL-~~~~~i~e~Al~~L~nLa~-~~~~r~~i~~~g~  610 (689)
                      .+|. +.+..++..++++|.+++. ++.++..+...|+++.|+.++ +.+..+...++.+|.+++. .++.+..+.+.|+
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  187 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM  187 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             99604998999999999999874244026789987201268899880586578899999999987445778888887646


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCC-CHH-HHH---HHHHCCC--HHHHHHHHHHHHHH
Q ss_conf             99999996069999999999999999408986599999489-969-899---9250699--89999999999994
Q 005598          611 IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEG-AVP-PLV---ALSQSGT--PRAKEKAQALLSYF  678 (689)
Q Consensus       611 i~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~iv~~g-~i~-~L~---~LL~~~~--~~vk~~A~~lL~~L  678 (689)
                      ++.|+.+|.+.++.+++.|+++|++|+..++.....+...+ +.. .|.   .++....  .+..+.+..++..+
T Consensus       188 v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~~~~~~ll~~~  262 (264)
T d1xqra1         188 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC  262 (264)
T ss_dssp             HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             899999973999899999999999998648899999987444599999999976311577899999999999986

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2.1e-22  Score=150.47  Aligned_cols=77  Identities=34%  Similarity=0.495  Sum_probs=72.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             99998422656521266953258896104888999996199999999976789999762999999999999859999
Q 005598           95 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKL  171 (689)
Q Consensus        95 ~~~p~~~~CPI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~  171 (689)
                      .++|++|.||||+++|+|||+++|||||||.||.+|+..++.+||.|+++++..++.||..|+++|++|+++|++..
T Consensus         2 ~eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~~~   78 (80)
T d2c2la2           2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVE   78 (80)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSS
T ss_pred             CCCCCCCCCCCCCCHHHHHCCCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             98970011858373234033058868563889999986377657875666542355519999999999999877847

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=3.9e-22  Score=148.82  Aligned_cols=75  Identities=57%  Similarity=1.063  Sum_probs=71.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             999984226565212669532588961048889999961999999999767899997629999999999998599
Q 005598           95 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNV  169 (689)
Q Consensus        95 ~~~p~~~~CPI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~  169 (689)
                      .++|++|.||||+++|+|||+++|||+|||.||++|+..+..+||.|+.++...+++||++||++|+.|+++|++
T Consensus         3 peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~   77 (78)
T d1t1ha_           3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI   77 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCHHHCCEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             989962799171812108337267774339999999998888788655637756562469999999999999586

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.7e-21  Score=142.92  Aligned_cols=75  Identities=25%  Similarity=0.362  Sum_probs=68.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEECCCC-CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             999999842265652126695325889-6104888999996199999999976789999762999999999999859
Q 005598           93 SPVPIPSDFCCPLSLELMTDPVIVASG-QTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNN  168 (689)
Q Consensus        93 ~~~~~p~~~~CPI~~~lm~dPV~~~~G-~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~  168 (689)
                      ...++|++|.||||+++|+|||+++|| |||||.||.+|+..+ .+||+|++++...+|+||++||+.|+.|+.++.
T Consensus        15 ~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~-~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~   90 (98)
T d1wgma_          15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD-QTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK   90 (98)
T ss_dssp             CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS-CBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred             HHCCCCHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf             5159907748867346887777623553201499999998706-876655566640112013999999999999998

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.7e-15  Score=105.73  Aligned_cols=68  Identities=18%  Similarity=0.377  Sum_probs=59.2

Q ss_pred             CCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             98422656521266953258896104888999996199--999999976789999762999999999999
Q 005598           98 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGL--FVCPKTRQTLAHTTLIPNYTVKALIANWCE  165 (689)
Q Consensus        98 p~~~~CPI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~--~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~  165 (689)
                      -+.|.||||+++|.+||+++|||+||+.||.+|+....  ..||.||.++...++.||..+.++++.+.+
T Consensus        19 ~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~   88 (103)
T d1jm7a_          19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (103)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             CCCCCCCCCCCHHCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHH
T ss_conf             3584997218231891883799864167899999977999809698883875528757899999999999

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=3.4e-14  Score=100.45  Aligned_cols=67  Identities=21%  Similarity=0.380  Sum_probs=55.9

Q ss_pred             CCCCCCC----CCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCHHHHHHH
Q ss_conf             9999984----226565212669532588961048889999961999999999767899997-629999999
Q 005598           94 PVPIPSD----FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI-PNYTVKALI  160 (689)
Q Consensus        94 ~~~~p~~----~~CPI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~-pn~~l~~~i  160 (689)
                      ..+.|++    |.||||+++|.|||+++|||+||+.||++|+..++.+||.||.++...++. |..++.+.+
T Consensus        13 ~~d~~~d~~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l   84 (86)
T d1rmda2          13 AVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL   84 (86)
T ss_dssp             SSCCCHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred             CCCCHHHHCCCCCCCCCCCCHHCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHH
T ss_conf             211224305675995678444155526788763199999999648790703699799666359899999986

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.1e-14  Score=101.78  Aligned_cols=67  Identities=15%  Similarity=0.254  Sum_probs=59.6

Q ss_pred             CCCCCCCCCCCCCCCCCEEC-CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99842265652126695325-88961048889999961999999999767899997629999999999998
Q 005598           97 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCEL  166 (689)
Q Consensus        97 ~p~~~~CPI~~~lm~dPV~~-~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~  166 (689)
                      +++.|.||||+++|.|||++ +|||+||+.||.+|+.   ..||.||.++...++.+|..|..+|+.+...
T Consensus        19 l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~   86 (97)
T d1jm7b_          19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKL   86 (97)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCCCHHHCCCEECCCCCCHHHHHHHHHHH---CCCCCCCCCCCHHHCCCCHHHHHHHHHHHHH
T ss_conf             2122899258722112746588999302999999985---3666227867655186058999999999999

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=1.1e-13  Score=97.30  Aligned_cols=52  Identities=17%  Similarity=0.341  Sum_probs=47.5

Q ss_pred             CCCCCCCCCCCCCEEC-CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2265652126695325-8896104888999996199999999976789999762
Q 005598          101 FCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN  153 (689)
Q Consensus       101 ~~CPI~~~lm~dPV~~-~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn  153 (689)
                      +.||||+++|+|||++ .|||+|||.||.+|+... .+||+||++++..+|+|.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~-~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEEC
T ss_pred             CCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHC-CCCCCCCCCCCHHHCEEC
T ss_conf             99936785688657457899845599999987603-679854781887753647

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8.8e-10  Score=73.62  Aligned_cols=182  Identities=14%  Similarity=0.082  Sum_probs=95.1

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf             99999977479999999999999850168325889885087599998504999889999999999631230789999982
Q 005598          489 IEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQA  568 (689)
Q Consensus       489 i~~Li~lL~s~~~~~r~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~iv~~  568 (689)
                      ++.+..++.+.++.+|..++.++..++..-.  .........+.+..++.+....++..|+.+|..|+..-...  ....
T Consensus       404 l~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~--~~~~  479 (588)
T d1b3ua_         404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLG--VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHA  479 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC--GGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCH--HHHH
T ss_conf             8999999843358899999999999997718--47677888888776356874168999999999999983938--7899


Q ss_pred             CCHHHHHHHC-CCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             7099999813-999479999999999982790159999956949999999606999999999999999940898659999
Q 005598          569 GAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMV  647 (689)
Q Consensus       569 G~v~~Lv~LL-~~~~~i~e~Al~~L~nLa~~~~~r~~i~~~g~i~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~i  647 (689)
                      ..++.+..++ +.+...+..++.++..+...-.  ........+|.|++++....+.+|..++.+|..+...-..   ..
T Consensus       480 ~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~--~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~---~~  554 (588)
T d1b3ua_         480 TIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG--QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN---ST  554 (588)
T ss_dssp             HTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH--HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH---HH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC---HH
T ss_conf             999999998659987899999999999999869--6878999999999885999879999999999999987080---75


Q ss_pred             HHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             94899698999250699899999999999946
Q 005598          648 LQEGAVPPLVALSQSGTPRAKEKAQALLSYFR  679 (689)
Q Consensus       648 v~~g~i~~L~~LL~~~~~~vk~~A~~lL~~L~  679 (689)
                      .+....+.|..++.+.+..+|..|.++|..|.
T Consensus       555 ~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         555 LQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             79999999999757998779999999999874

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.4e-10  Score=77.09  Aligned_cols=264  Identities=9%  Similarity=0.080  Sum_probs=142.0

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC--CCCHHHH
Q ss_conf             99999993399999999999999996314903089999539399999965389999999999999995169--8308999
Q 005598          406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN--DNNKSAI  483 (689)
Q Consensus       406 I~~Li~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Li~lL~s~~~~v~e~Al~aL~nLs~~--~~~k~~i  483 (689)
                      ++.+...+.+.++.++..++..|..++..-.  . .+.....++.+..++...+.+++..++..|..++..  .......
T Consensus       244 ~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~--~-~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~  320 (588)
T d1b3ua_         244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVG--P-EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENV  320 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--H-HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999972023568888999985788887766--5-343444168999987213357779999879999998766554332


Q ss_pred             HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCC---------------------------------------CCCHHHHHH
Q ss_conf             97189999999774799999999999998501---------------------------------------683258898
Q 005598          484 ANANAIEPLIHVLQTGSPEARENAAATLFSLS---------------------------------------VIEDNKIKI  524 (689)
Q Consensus       484 ~~~g~i~~Li~lL~s~~~~~r~~Aa~aL~nLs---------------------------------------~~~~~k~~I  524 (689)
                      .....++.+...+.+.+..++..++.++..++                                       ..-.. .. 
T Consensus       321 ~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~-~~-  398 (588)
T d1b3ua_         321 IMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-RQ-  398 (588)
T ss_dssp             HHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-HH-
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HH-
T ss_conf             1999988888761388767899999988655430131678888888899998751022226778888888750031-34-


Q ss_pred             HHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHC-CCCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             850875999985049998899999999996312307899999827099999813-9994799999999999827901599
Q 005598          525 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV  603 (689)
Q Consensus       525 ~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~iv~~G~v~~Lv~LL-~~~~~i~e~Al~~L~nLa~~~~~r~  603 (689)
                      .....++.+..++.+.+.+++..++.++..++..-.  .........+.++.++ ++...++..|+.+|..|+..-. .+
T Consensus       399 ~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~-~~  475 (588)
T d1b3ua_         399 LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG--VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG-KE  475 (588)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC--GGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-HH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CH
T ss_conf             436778999999843358899999999999997718--476778888887763568741689999999999999839-38


Q ss_pred             HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf             999569499999996069999999999999999408986599999489969899925069989999999999994608
Q 005598          604 AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ  681 (689)
Q Consensus       604 ~i~~~g~i~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~iv~~g~i~~L~~LL~~~~~~vk~~A~~lL~~L~~~  681 (689)
                       ......++.+..++.+.+...+..++.++..+....+   ........+|.|+.++.+..+.+|..|+.+|..+...
T Consensus       476 -~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~---~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~  549 (588)
T d1b3ua_         476 -WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             -HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred             -HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             -7899999999998659987899999999999999869---6878999999999885999879999999999999987

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=4.6e-09  Score=69.26  Aligned_cols=274  Identities=10%  Similarity=0.054  Sum_probs=180.5

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHC-CCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             999999339999999999999999631490308999953-9399999965389999999999999995169830899997
Q 005598          407 RKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN  485 (689)
Q Consensus       407 ~~Li~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-g~I~~Li~lL~s~~~~v~e~Al~aL~nLs~~~~~k~~i~~  485 (689)
                      ..+...+..++.-....+...+..++............. .....+-.+..+.+.+.+.-++.+|..+...+..|..+..
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~  204 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWL  204 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHT
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             78887315760589999899999998456535434788877569999851213232489999999988267507899988


Q ss_pred             --CCCHHHHHHHHCC-----------------CCHHHHHHHHHHHHHCCCCCHHHHHHHHH--CCHHHHHHHHCCC-CHH
Q ss_conf             --1899999997747-----------------99999999999998501683258898850--8759999850499-988
Q 005598          486 --ANAIEPLIHVLQT-----------------GSPEARENAAATLFSLSVIEDNKIKIGRS--GAIGPLVDLLGNG-TPR  543 (689)
Q Consensus       486 --~g~i~~Li~lL~s-----------------~~~~~r~~Aa~aL~nLs~~~~~k~~I~~~--g~I~~Lv~LL~~~-~~~  543 (689)
                        ...+++|+.+|+.                 ...+.+++++.++|-|+...+....+...  +.++.|+++++.. ...
T Consensus       205 ~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEK  284 (477)
T d1ho8a_         205 HEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEK  284 (477)
T ss_dssp             THHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             13221788999999874256542000036888537999999999999975897899987732678999999988631778


Q ss_pred             HHHHHHHHHHHHHHCHH------HHHHHHHHCCHHHHHHHCC---CCHHHHHHHHHHHHH-------HHC----------
Q ss_conf             99999999996312307------8999998270999998139---994799999999999-------827----------
Q 005598          544 GKKDAATALFNLSIYHE------NKARIVQAGAVKHLVDLMD---PAAGMVDKAVAVLAN-------LAT----------  597 (689)
Q Consensus       544 v~~~Al~aL~nLs~~~~------n~~~iv~~G~v~~Lv~LL~---~~~~i~e~Al~~L~n-------La~----------  597 (689)
                      +.+.++.+|.|+.....      ....++..++++.+-.|..   .+.++.+..-.+-..       ++.          
T Consensus       285 vvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~S  364 (477)
T d1ho8a_         285 VSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDS  364 (477)
T ss_dssp             HHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             99999999999862122233567899999715168999974399997789999999999999988850759999999954


Q ss_pred             -----CCHHH-HHHHH----------CCCHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
Q ss_conf             -----90159-99995----------694999999960----------69999999999999999408986599999489
Q 005598          598 -----IPDGR-VAIGQ----------ENGIPVLVEVVE----------LGSARGKENAAAALLQLCTNSSRFCSMVLQEG  651 (689)
Q Consensus       598 -----~~~~r-~~i~~----------~g~i~~Lv~lL~----------s~s~~~~e~Av~aL~~L~~~~~~~~~~iv~~g  651 (689)
                           ++.-+ +.|..          ...+..|+++|.          +.++.+...||.=|..+|++.+..+..+-+.|
T Consensus       365 g~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg  444 (477)
T d1ho8a_         365 KLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTG  444 (477)
T ss_dssp             TCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf             98777787677258999998624135489999999986204455554578823331335007799997853367998828


Q ss_pred             CHHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             96989992506998999999999999460
Q 005598          652 AVPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       652 ~i~~L~~LL~~~~~~vk~~A~~lL~~L~~  680 (689)
                      +-..+..|+.+.++.+|..|..++..+-.
T Consensus       445 ~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         445 GKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             39999988649997999999999999998

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1e-11  Score=85.34  Aligned_cols=52  Identities=19%  Similarity=0.218  Sum_probs=46.1

Q ss_pred             CCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             8422656521266953258896104888999996199999999976789999
Q 005598           99 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL  150 (689)
Q Consensus        99 ~~~~CPI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l  150 (689)
                      +...||||++.+.+||+++|||+||+.||.+|+..+..+||+||+.+.....
T Consensus        22 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~   73 (79)
T d1fbva4          22 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP   73 (79)
T ss_dssp             CTTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCC
T ss_pred             CCCCCCCCCCCCCCEEEECCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCE
T ss_conf             9899935897689969958999352999999999785818997958647766

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=3.2e-08  Score=64.12  Aligned_cols=230  Identities=12%  Similarity=0.066  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             59999999933999999999999999963149030899995393999999653899999999999999951698308999
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI  483 (689)
Q Consensus       404 ~~I~~Li~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Li~lL~s~~~~v~e~Al~aL~nLs~~~~~k~~i  483 (689)
                      .....|+++|+++++.++..|+..|..+..           ..+++.|+.++++.++.++..|+.+|..+.........+
T Consensus        19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~   87 (276)
T d1oyza_          19 LNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV   87 (276)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH
T ss_pred             CCHHHHHHHHCCCCHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf             799999988469999999999999986188-----------739999999980999899999999998720221212022


Q ss_pred             HHCCCHHHHH-HHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHH
Q ss_conf             9718999999-977479999999999999850168325889885087599998504999889999999999631230789
Q 005598          484 ANANAIEPLI-HVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK  562 (689)
Q Consensus       484 ~~~g~i~~Li-~lL~s~~~~~r~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~  562 (689)
                           ++.+. .++++.+..++..++.+|..+......    .....++.+...+.+.+..++..++.++.....     
T Consensus        88 -----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-----  153 (276)
T d1oyza_          88 -----FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-----  153 (276)
T ss_dssp             -----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred             -----HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCH-----
T ss_conf             -----999999986699766899999999987024621----018999999998647204899999998741023-----


Q ss_pred             HHHHHHCCHHHHHHHC-CCCHHHHHHHHHHHHHHHCCCHH----------------HH----HH---HHCCCHHHHHHHH
Q ss_conf             9999827099999813-99947999999999998279015----------------99----99---9569499999996
Q 005598          563 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG----------------RV----AI---GQENGIPVLVEVV  618 (689)
Q Consensus       563 ~~iv~~G~v~~Lv~LL-~~~~~i~e~Al~~L~nLa~~~~~----------------r~----~i---~~~g~i~~Lv~lL  618 (689)
                           ...++.+..++ +........+..++..+......                +.    .+   ....+++.|+..+
T Consensus       154 -----~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l  228 (276)
T d1oyza_         154 -----KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDEL  228 (276)
T ss_dssp             ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             -----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             -----889999887404664011135777877651021113316666411000012333200100000000499999995


Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCC-CHHHHHHHHHHHH
Q ss_conf             069999999999999999408986599999489969899925069-9899999999999
Q 005598          619 ELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLS  676 (689)
Q Consensus       619 ~s~s~~~~e~Av~aL~~L~~~~~~~~~~iv~~g~i~~L~~LL~~~-~~~vk~~A~~lL~  676 (689)
                      .+.  .++..++.+|..+.           ...+++.|..++... +..++..|...|+
T Consensus       229 ~d~--~vr~~a~~aL~~ig-----------~~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         229 KKN--TVYDDIIEAAGELG-----------DKTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             TSS--SCCHHHHHHHHHHC-----------CGGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             CCH--HHHHHHHHHHHHCC-----------CHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf             795--99999999998759-----------98799999999804999999999999970

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=6.3e-09  Score=68.42  Aligned_cols=106  Identities=13%  Similarity=0.084  Sum_probs=40.1

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH--CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC--CCCHH
Q ss_conf             999999933999999999999999963149030899995--39399999965389999999999999995169--83089
Q 005598          406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDMLHSSETKIQENAVTALLNLSIN--DNNKS  481 (689)
Q Consensus       406 I~~Li~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~--~g~I~~Li~lL~s~~~~v~e~Al~aL~nLs~~--~~~k~  481 (689)
                      ++.+...+.+.++..+..|+.++..++....+   .+..  ...++.|+.++.+.++.++..++++|+.++..  .....
T Consensus       397 l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~---~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~  473 (888)
T d1qbkb_         397 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQ---GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD  473 (888)
T ss_dssp             HHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHH---HHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99988751220568999999986435555787---742120355679998426998999999999999999986654156


Q ss_pred             HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf             9997189999999774799999999999998501
Q 005598          482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLS  515 (689)
Q Consensus       482 ~i~~~g~i~~Li~lL~s~~~~~r~~Aa~aL~nLs  515 (689)
                      . .-...++.++..+.+.+..++..|+.+|.++.
T Consensus       474 ~-~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~  506 (888)
T d1qbkb_         474 T-YLKPLMTELLKRILDSNKRVQEAACSAFATLE  506 (888)
T ss_dssp             H-HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             5-54555899998842898789998999999999

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.2e-09  Score=70.17  Aligned_cols=70  Identities=10%  Similarity=0.089  Sum_probs=35.7

Q ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             49999999606999999999999999940898659999948996989992506998999999999999460
Q 005598          610 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       610 ~i~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~iv~~g~i~~L~~LL~~~~~~vk~~A~~lL~~L~~  680 (689)
                      .+|.|...+.+.+..++..++.++..+....+......+. ..++.++..+.+.+..+|+.|..+|..+.+
T Consensus       963 ~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~-~li~~ll~~l~d~~~~vR~~al~~l~~~~~ 1032 (1207)
T d1u6gc_         963 LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDPDLNVRRVALVTFNSAAH 1032 (1207)
T ss_dssp             THHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHH-HHSTTTHHHHSSSSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             9999999857999999999999999999866554678999-999999998679998999999999999998

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=3.7e-08  Score=63.72  Aligned_cols=72  Identities=15%  Similarity=0.126  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC-CCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             15599999999339999999999999999631490-30899995393999999653899999999999999951
Q 005598          402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS  474 (689)
Q Consensus       402 ~~~~I~~Li~~L~s~~~~~q~~Al~~L~~La~~s~-~nr~~i~~~g~I~~Li~lL~s~~~~v~e~Al~aL~nLs  474 (689)
                      ....++.|+..+++.++.++..++++|..++.... .....+ -...++.++..+.+.+..+++.|+++|.++.
T Consensus       434 l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~  506 (888)
T d1qbkb_         434 LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLE  506 (888)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             035567999842699899999999999999998665415655-4555899998842898789998999999999

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=1.6e-06  Score=53.73  Aligned_cols=200  Identities=15%  Similarity=0.097  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             55999999993399999999999999996314903089999539399999-96538999999999999999516983089
Q 005598          403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILV-DMLHSSETKIQENAVTALLNLSINDNNKS  481 (689)
Q Consensus       403 ~~~I~~Li~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Li-~lL~s~~~~v~e~Al~aL~nLs~~~~~k~  481 (689)
                      ...++.|++++++.++.++..|+..|..+.... ....     ..++.|. .++...++.++..++.+|.++....... 
T Consensus        49 ~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~-~~~~-----~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~-  121 (276)
T d1oyza_          49 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-KCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-  121 (276)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-TTHH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-CCCC-----CHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHH-
T ss_conf             739999999980999899999999998720221-2120-----229999999866997668999999999870246210-


Q ss_pred             HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHH
Q ss_conf             99971899999997747999999999999985016832588988508759999850499988999999999963123078
Q 005598          482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN  561 (689)
Q Consensus       482 ~i~~~g~i~~Li~lL~s~~~~~r~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n  561 (689)
                         ....++.+...+.+....++..++.++..+.          ....++.+..++...+..++..+..++..+......
T Consensus       122 ---~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~----------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  188 (276)
T d1oyza_         122 ---SPKIVEQSQITAFDKSTNVRRATAFAISVIN----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSD  188 (276)
T ss_dssp             ---HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH
T ss_pred             ---HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC----------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             ---1899999999864720489999999874102----------388999988740466401113577787765102111


Q ss_pred             -HH----------------------HHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf             -99----------------------9998270999998139994799999999999827901599999569499999996
Q 005598          562 -KA----------------------RIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV  618 (689)
Q Consensus       562 -~~----------------------~iv~~G~v~~Lv~LL~~~~~i~e~Al~~L~nLa~~~~~r~~i~~~g~i~~Lv~lL  618 (689)
                       ..                      .+....+++.|++.+.+ ..+...++.+|+.+.          +..+++.|..++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l~d-~~vr~~a~~aL~~ig----------~~~~~~~L~~~l  257 (276)
T d1oyza_         189 IRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK-NTVYDDIIEAAGELG----------DKTLLPVLDTML  257 (276)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS-SSCCHHHHHHHHHHC----------CGGGHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCC----------CHHHHHHHHHHH
T ss_conf             331666641100001233320010000000049999999579-599999999998759----------987999999998


Q ss_pred             CC-CCHHHHHHHHHHH
Q ss_conf             06-9999999999999
Q 005598          619 EL-GSARGKENAAAAL  633 (689)
Q Consensus       619 ~s-~s~~~~e~Av~aL  633 (689)
                      .. .+..++..|+.+|
T Consensus       258 ~~~~d~~vr~~A~~~L  273 (276)
T d1oyza_         258 YKFDDNEIITSAIDKL  273 (276)
T ss_dssp             TTSSCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHH
T ss_conf             0499999999999997

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=9.8e-10  Score=73.31  Aligned_cols=53  Identities=17%  Similarity=0.250  Sum_probs=43.4

Q ss_pred             CCCCCCCCCCCCCCC-----EECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             842265652126695-----32588961048889999961999999999767899997
Q 005598           99 SDFCCPLSLELMTDP-----VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI  151 (689)
Q Consensus        99 ~~~~CPI~~~lm~dP-----V~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~  151 (689)
                      ++..||||++.+..+     ++++|||+||+.||.+|+..+..+||.||+++...++.
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~~   59 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR   59 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred             CCCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             9899870882600399567984763727648899998570819799998681304541

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.5e-06  Score=54.02  Aligned_cols=69  Identities=14%  Similarity=0.146  Sum_probs=32.4

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCH-HHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             9999999606999999999999999940898-659999948996989992506998999999999999460
Q 005598          611 IPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN  680 (689)
Q Consensus       611 i~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~-~~~~~iv~~g~i~~L~~LL~~~~~~vk~~A~~lL~~L~~  680 (689)
                      ++.+.+.+.+.+..+++.|+.+|..++.... ...... -...++.|+..+++.++++|..|.++|..+..
T Consensus       367 ~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         367 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999985699989999999999999975477678988-99999999988489989999999999999999

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=7.6e-10  Score=73.99  Aligned_cols=51  Identities=12%  Similarity=0.117  Sum_probs=42.9

Q ss_pred             CCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8422656521266953258896104888999996199999999976789999762
Q 005598           99 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN  153 (689)
Q Consensus        99 ~~~~CPI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn  153 (689)
                      +.+.||||++.|.||++++|||+||+.||++|    ..+||.||+++....-.|.
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~~a   55 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTPA   55 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSCCC
T ss_pred             CCCCCCCCCCCCCCCEEECCCCHHHHHHHHCC----CCCCCCCCCCCCCCCCCCC
T ss_conf             78898402941589789017777859988729----7968497996669989888

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.5e-07  Score=57.82  Aligned_cols=25  Identities=24%  Similarity=0.185  Sum_probs=10.3

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             9999606999999999999999940
Q 005598          614 LVEVVELGSARGKENAAAALLQLCT  638 (689)
Q Consensus       614 Lv~lL~s~s~~~~e~Av~aL~~L~~  638 (689)
                      +++.+.+.++.++..|+.+|.+++.
T Consensus       858 l~~~l~~~~~~vr~aAa~aLg~l~~  882 (1207)
T d1u6gc_         858 ILEAFSSPSEEVKSAASYALGSISV  882 (1207)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             9998089988999999999999997

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.73  E-value=3.3e-09  Score=70.11  Aligned_cols=45  Identities=20%  Similarity=0.456  Sum_probs=39.7

Q ss_pred             CCCCCCCCCCCCEE-CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             26565212669532-58896104888999996199999999976789
Q 005598          102 CCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLAH  147 (689)
Q Consensus       102 ~CPI~~~lm~dPV~-~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~  147 (689)
                      .||||++.|.+|++ ++|||+||..||.+|+..+ .+||.||.++..
T Consensus         7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~-~~CP~CR~~i~~   52 (68)
T d1chca_           7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVES   52 (68)
T ss_dssp             CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCCC
T ss_pred             CCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHC-CCCCCCCCCHHH
T ss_conf             9944993966883882899917689999999829-908887816372

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=4.6e-06  Score=50.99  Aligned_cols=26  Identities=8%  Similarity=0.162  Sum_probs=9.8

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             99999993399999999999999996
Q 005598          406 VRKLVEDLKSTSLDTQREATAELRLL  431 (689)
Q Consensus       406 I~~Li~~L~s~~~~~q~~Al~~L~~L  431 (689)
                      ++.++..+.+.++.++..+++.+..+
T Consensus       413 l~~l~~~l~d~~~~vr~~a~~~l~~l  438 (861)
T d2bpta1         413 LPSILNLMNDQSLQVKETTAWCIGRI  438 (861)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             99998873376205666898899999

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=3.4e-08  Score=63.97  Aligned_cols=53  Identities=9%  Similarity=0.246  Sum_probs=42.0

Q ss_pred             CCCCCCCCCCCCCCCCCC------------------EECCCCCCCCHHHHHHHHHCC----CCCCCCCCCCCCCC
Q ss_conf             999842265652126695------------------325889610488899999619----99999999767899
Q 005598           96 PIPSDFCCPLSLELMTDP------------------VIVASGQTYERAFIKKWIDLG----LFVCPKTRQTLAHT  148 (689)
Q Consensus        96 ~~p~~~~CPI~~~lm~dP------------------V~~~~G~ty~r~~I~~~l~~~----~~~cP~t~~~l~~~  148 (689)
                      ..+.+..||||++-|.++                  .+++|||.|+..||.+|+...    +.+||.||..+...
T Consensus        21 ~~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          21 KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             SSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             CCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCC
T ss_conf             046565345301000134443354333454554346879999905699999999966757897665501220667

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=2.3e-05  Score=46.69  Aligned_cols=225  Identities=14%  Similarity=0.163  Sum_probs=133.1

Q ss_pred             HCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHC--CCHHHHHHHHCC-----------------CCHHHHHHHHHHHHHH
Q ss_conf             339999999999999999631490308999953--939999996538-----------------9999999999999995
Q 005598          413 LKSTSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLHS-----------------SETKIQENAVTALLNL  473 (689)
Q Consensus       413 L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~--g~I~~Li~lL~s-----------------~~~~v~e~Al~aL~nL  473 (689)
                      ..+++.+.+.-++.++..+.+ .+..|..+-..  ..++.|+..|..                 .+..++.+++-+++-|
T Consensus       174 ~~~~~~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlL  252 (477)
T d1ho8a_         174 QNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLL  252 (477)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHH
T ss_pred             HCCCCCCHHHHHHHHHHHHHC-CCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             121323248999999998826-7507899988132217889999998742565420000368885379999999999999


Q ss_pred             HCCCCCHHHHHHC--CCHHHHHHHHCCC-CHHHHHHHHHHHHHCCCCC--HH----HHHHHHHCCHHHHHHHHCCC---C
Q ss_conf             1698308999971--8999999977479-9999999999998501683--25----88988508759999850499---9
Q 005598          474 SINDNNKSAIANA--NAIEPLIHVLQTG-SPEARENAAATLFSLSVIE--DN----KIKIGRSGAIGPLVDLLGNG---T  541 (689)
Q Consensus       474 s~~~~~k~~i~~~--g~i~~Li~lL~s~-~~~~r~~Aa~aL~nLs~~~--~~----k~~I~~~g~I~~Lv~LL~~~---~  541 (689)
                      +.+++....+.+.  +.++.|+.+++.. -..+...++.++.|+....  .+    ...+...++++. +..|...   +
T Consensus       253 SF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~D  331 (477)
T d1ho8a_         253 TFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSD  331 (477)
T ss_dssp             TTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSS
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHCCCCCC
T ss_conf             75897899987732678999999988631778999999999998621222335678999997151689-99974399997


Q ss_pred             HHHHHHHH-------HHHHHHHHCHHHH------------------------HHHHH--HCCHHHHHHHCC---------
Q ss_conf             88999999-------9999631230789------------------------99998--270999998139---------
Q 005598          542 PRGKKDAA-------TALFNLSIYHENK------------------------ARIVQ--AGAVKHLVDLMD---------  579 (689)
Q Consensus       542 ~~v~~~Al-------~aL~nLs~~~~n~------------------------~~iv~--~G~v~~Lv~LL~---------  579 (689)
                      +++....-       .-+..++..++-.                        .++-+  ...+..|+++|+         
T Consensus       332 edl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~  411 (477)
T d1ho8a_         332 EELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVN  411 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf             78999999999999998885075999999995498777787677258999998624135489999999986204455554


Q ss_pred             C--CHHHHHHHHHHHHHHHC-CCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             9--94799999999999827-901599999569499999996069999999999999999408
Q 005598          580 P--AAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN  639 (689)
Q Consensus       580 ~--~~~i~e~Al~~L~nLa~-~~~~r~~i~~~g~i~~Lv~lL~s~s~~~~e~Av~aL~~L~~~  639 (689)
                      .  +..+..-||.=++.++. .|.||..+-+.|+=..++++|.+.++.++.+|..++..+..+
T Consensus       412 ~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~  474 (477)
T d1ho8a_         412 AKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY  474 (477)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             578823331335007799997853367998828399999886499979999999999999985

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=6.1e-08  Score=62.41  Aligned_cols=48  Identities=19%  Similarity=0.244  Sum_probs=39.7

Q ss_pred             CCCCCCCCCCCCC----EECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             2265652126695----32588961048889999961999999999767899
Q 005598          101 FCCPLSLELMTDP----VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT  148 (689)
Q Consensus       101 ~~CPI~~~lm~dP----V~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~  148 (689)
                      +.||||++-|.+.    ++++|||+|++.||.+|+..+..+||+||+++..+
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~d   52 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED   52 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSCC
T ss_pred             CCCCCCCHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             9995878235189825986699770455899999966489898657948899

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.3e-05  Score=48.16  Aligned_cols=254  Identities=14%  Similarity=0.125  Sum_probs=150.6

Q ss_pred             HHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHCCCCCCHH-HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC-CC
Q ss_conf             5599999999339--9999999999999996314903089-999539399999965389999999999999995169-83
Q 005598          403 ETQVRKLVEDLKS--TSLDTQREATAELRLLAKHNMDNRM-VIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DN  478 (689)
Q Consensus       403 ~~~I~~Li~~L~s--~~~~~q~~Al~~L~~La~~s~~nr~-~i~~~g~I~~Li~lL~s~~~~v~e~Al~aL~nLs~~-~~  478 (689)
                      ...++.++..+.+  .+.+++..++..+..+......... ........+.+..++.+.+++++..++.+|..+... ..
T Consensus       170 ~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~  249 (458)
T d1ibrb_         170 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ  249 (458)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999986154567999999999999998861324566777777676688772599899999999999999987199


Q ss_pred             CHHHHHHCCCH-HHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHH---------------------HHHHHHCCHHHHHHH
Q ss_conf             08999971899-99999774799999999999998501683258---------------------898850875999985
Q 005598          479 NKSAIANANAI-EPLIHVLQTGSPEARENAAATLFSLSVIEDNK---------------------IKIGRSGAIGPLVDL  536 (689)
Q Consensus       479 ~k~~i~~~g~i-~~Li~lL~s~~~~~r~~Aa~aL~nLs~~~~~k---------------------~~I~~~g~I~~Lv~L  536 (689)
                      .-.... ...+ ..+...+.+.+..++..++..+..++......                     ........++.+...
T Consensus       250 ~~~~~l-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  328 (458)
T d1ibrb_         250 YMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT  328 (458)
T ss_dssp             GCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999888-7789999999843545999999999999989988999985036787641899999999998899872667764


Q ss_pred             HCC-------CCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHC-CCCHHHHHHHHHHHHHHHCCCHHHH-HHHH
Q ss_conf             049-------998899999999996312307899999827099999813-9994799999999999827901599-9995
Q 005598          537 LGN-------GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV-AIGQ  607 (689)
Q Consensus       537 L~~-------~~~~v~~~Al~aL~nLs~~~~n~~~iv~~G~v~~Lv~LL-~~~~~i~e~Al~~L~nLa~~~~~r~-~i~~  607 (689)
                      +..       .....+..+..++..++......  + -...++.+.+.+ +++...++.++.+|+.++....... .-.-
T Consensus       329 ~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~-~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l  405 (458)
T d1ibrb_         329 LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD--I-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV  405 (458)
T ss_dssp             TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT--H-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT
T ss_pred             HHCCHHHHCCCCCCHHHHHHHHHHHHHHHCCHH--H-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             000102101122339999999999998755175--5-6678999999856999899999999999999754776789889


Q ss_pred             CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf             69499999996069999999999999999408986599999489969899925069
Q 005598          608 ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG  663 (689)
Q Consensus       608 ~g~i~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~iv~~g~i~~L~~LL~~~  663 (689)
                      ...++.|+..+.+.++.++..|+++|..++..-+..   ....-.++.|+..+..|
T Consensus       406 ~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~---~~~~~~l~~ll~~ll~g  458 (458)
T d1ibrb_         406 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA---AINDVYLAPLLQCLIEG  458 (458)
T ss_dssp             TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG---CCSTTTHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHCC
T ss_conf             999999998848998999999999999999972010---01356899999998285

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=3.9e-05  Score=45.31  Aligned_cols=231  Identities=15%  Similarity=0.081  Sum_probs=100.1

Q ss_pred             HHHHHHHHCC--CCHHHHHHHHHHHHHHHCC--CCCHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             9999996538--9999999999999995169--83089999718999999977479-99999999999985016832588
Q 005598          448 INILVDMLHS--SETKIQENAVTALLNLSIN--DNNKSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKI  522 (689)
Q Consensus       448 I~~Li~lL~s--~~~~v~e~Al~aL~nLs~~--~~~k~~i~~~g~i~~Li~lL~s~-~~~~r~~Aa~aL~nLs~~~~~k~  522 (689)
                      ++.+..++..  .+..+++.++.++..++..  +.....+  ...++.++..|++. ..+++..++.++..+........
T Consensus       608 ~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l--~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~  685 (876)
T d1qgra_         608 MASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM--EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNI  685 (876)
T ss_dssp             HHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999863788863589999999999987221067779--98999999998188858999999999999998727765


Q ss_pred             HHHHHCCHHHHHHHHCCC--CHHHHHHHHHHHHHHHHCH-HHHHHHHHHCCHHHHHHHC----CC-CHHH-------HHH
Q ss_conf             988508759999850499--9889999999999631230-7899999827099999813----99-9479-------999
Q 005598          523 KIGRSGAIGPLVDLLGNG--TPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM----DP-AAGM-------VDK  587 (689)
Q Consensus       523 ~I~~~g~I~~Lv~LL~~~--~~~v~~~Al~aL~nLs~~~-~n~~~iv~~G~v~~Lv~LL----~~-~~~i-------~e~  587 (689)
                      ...-...++.++..+.+.  +..++..++.++..++..- +.-...+ ...++.|.+.+    +. +.+.       .+.
T Consensus       686 ~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl-~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~  764 (876)
T d1qgra_         686 IPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL-EVVLNTLQQASQAQVDKSDYDMVDYLNELRES  764 (876)
T ss_dssp             HHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             42699999999998187668899999999999999999708658789-99999999998624676515689999999999


Q ss_pred             HHHHHHHH----HCCCHH-HHHHH-HCCCHHHHHHHH------CCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHCCCHH
Q ss_conf             99999998----279015-99999-569499999996------0699999999999999994089-86599999489969
Q 005598          588 AVAVLANL----ATIPDG-RVAIG-QENGIPVLVEVV------ELGSARGKENAAAALLQLCTNS-SRFCSMVLQEGAVP  654 (689)
Q Consensus       588 Al~~L~nL----a~~~~~-r~~i~-~~g~i~~Lv~lL------~s~s~~~~e~Av~aL~~L~~~~-~~~~~~iv~~g~i~  654 (689)
                      ++.++..+    ...... ...+. -...++.++.++      ...+..+...|+..|..++..- ......+.....+.
T Consensus       765 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~v~  844 (876)
T d1qgra_         765 CLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIH  844 (876)
T ss_dssp             HHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             99999999998422321112449999999989999999986488778999999999999999997778999884680899


Q ss_pred             -HHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf             -899925069989999999999994608
Q 005598          655 -PLVALSQSGTPRAKEKAQALLSYFRNQ  681 (689)
Q Consensus       655 -~L~~LL~~~~~~vk~~A~~lL~~L~~~  681 (689)
                       .|.....+.++..|..|.|+.+.+.+.
T Consensus       845 ~ll~~~~~s~~~~~~~~a~~~~~~~~~~  872 (876)
T d1qgra_         845 ELLTEGRRSKTNKAKTLARWATKELRKL  872 (876)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999987199878999999999999974

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=4.9e-05  Score=44.70  Aligned_cols=70  Identities=10%  Similarity=0.068  Sum_probs=27.5

Q ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHCCC--CHHHHHHHHHHHHHHHH
Q ss_conf             99999997747999999999999985016832588988508759999850499--98899999999996312
Q 005598          488 AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDAATALFNLSI  557 (689)
Q Consensus       488 ~i~~Li~lL~s~~~~~r~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~--~~~v~~~Al~aL~nLs~  557 (689)
                      .++.|+..|.+.+..++..|+.++..++..-.....-.....++.|+..+++.  +..++..++.+|..++.
T Consensus       640 i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~  711 (861)
T d2bpta1         640 FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIAS  711 (861)
T ss_dssp             HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             705999873799889999999999999997578727119999999999857888889999999999999999

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.31  E-value=1.7e-07  Score=59.68  Aligned_cols=49  Identities=18%  Similarity=0.466  Sum_probs=40.0

Q ss_pred             CCCCCCCCCCCCCCCCC---EEC-CCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             99842265652126695---325-889610488899999619999999997678
Q 005598           97 IPSDFCCPLSLELMTDP---VIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLA  146 (689)
Q Consensus        97 ~p~~~~CPI~~~lm~dP---V~~-~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~  146 (689)
                      +.++..||||++-|.+.   +.+ .|||.|+..||.+|+... .+||+||.++-
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~-~~CP~CR~~i~   54 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH-STCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC-CSCSSSCCCSC
T ss_pred             CCCCCCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHC-CCCCCCCCEEE
T ss_conf             889999849790010798899908989810599999999849-93878897848

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=0.00014  Score=41.89  Aligned_cols=30  Identities=17%  Similarity=0.207  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Q ss_conf             599999999339999999999999999631
Q 005598          404 TQVRKLVEDLKSTSLDTQREATAELRLLAK  433 (689)
Q Consensus       404 ~~I~~Li~~L~s~~~~~q~~Al~~L~~La~  433 (689)
                      ..++.++..+.+.++.++..+++.+..++.
T Consensus       408 ~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~  437 (876)
T d1qgra_         408 QAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (876)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             999999986157860899999988999999

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.1e-06  Score=54.78  Aligned_cols=45  Identities=16%  Similarity=0.410  Sum_probs=36.4

Q ss_pred             CCCCCCCCCCC-----------------C-EECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             26565212669-----------------5-3258896104888999996199999999976789
Q 005598          102 CCPLSLELMTD-----------------P-VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH  147 (689)
Q Consensus       102 ~CPI~~~lm~d-----------------P-V~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~  147 (689)
                      .|+||++-|.+                 + +.++|||.|...||.+|+..+ .+||+||+++..
T Consensus        23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~   85 (88)
T d3dplr1          23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWEF   85 (88)
T ss_dssp             CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-SBCSSSCSBCCE
T ss_pred             CCEECCCHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHC-CCCCCCCCCCCC
T ss_conf             287836024186543233332133556872872654746579999999879-968788972312

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=97.95  E-value=5.1e-06  Score=50.69  Aligned_cols=50  Identities=14%  Similarity=0.260  Sum_probs=42.1

Q ss_pred             CCCCCCCCCCCCCCCCEECCCC-----CCCCHHHHHHHHHC-CCCCCCCCCCCCCC
Q ss_conf             9842265652126695325889-----61048889999961-99999999976789
Q 005598           98 PSDFCCPLSLELMTDPVIVASG-----QTYERAFIKKWIDL-GLFVCPKTRQTLAH  147 (689)
Q Consensus        98 p~~~~CPI~~~lm~dPV~~~~G-----~ty~r~~I~~~l~~-~~~~cP~t~~~l~~  147 (689)
                      .+...|+||++-+.++.+.+|+     |.|.+.||++|+.. ++.+||+||+++..
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCCCCCCCCCCCCCEEEECCCCCCCCEECHHHHHHHHHHCCCCCCCCCCCEEEC
T ss_conf             88999923886277751673145897788738999999710789889166971242

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.68  E-value=4.8e-05  Score=44.77  Aligned_cols=87  Identities=17%  Similarity=0.194  Sum_probs=58.6

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             99999999339999999999999999631490308999953939999996538999999999999999516983089999
Q 005598          405 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA  484 (689)
Q Consensus       405 ~I~~Li~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Li~lL~s~~~~v~e~Al~aL~nLs~~~~~k~~i~  484 (689)
                      .++.|+..|.+.++.++..|+..|..+..           ..+++.|+.+|.+.++.++..++.+|..+.          
T Consensus        23 ~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~----------   81 (111)
T d1te4a_          23 AFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------   81 (111)
T ss_dssp             THHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHCCH-----------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHC----------
T ss_conf             99999999749987899999999876101-----------232799873302303379999999999867----------


Q ss_pred             HCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             7189999999774799999999999998
Q 005598          485 NANAIEPLIHVLQTGSPEARENAAATLF  512 (689)
Q Consensus       485 ~~g~i~~Li~lL~s~~~~~r~~Aa~aL~  512 (689)
                      ....++.|..++++++..+|..|+.+|.
T Consensus        82 ~~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          82 GERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             CCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             6114999999882998999999999987

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.49  E-value=0.00018  Score=41.28  Aligned_cols=88  Identities=26%  Similarity=0.296  Sum_probs=53.1

Q ss_pred             CCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             93999999653899999999999999951698308999971899999997747999999999999985016832588988
Q 005598          446 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG  525 (689)
Q Consensus       446 g~I~~Li~lL~s~~~~v~e~Al~aL~nLs~~~~~k~~i~~~g~i~~Li~lL~s~~~~~r~~Aa~aL~nLs~~~~~k~~I~  525 (689)
                      .+++.|+.+|.+++..++..++.+|.++.          ..+.++.|+.+|++.+..+|..++.+|..+.          
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~----------   81 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQ----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------   81 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHCC----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC----------
T ss_conf             89999999974998789999999987610----------1232799873302303379999999999867----------


Q ss_pred             HHCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             5087599998504999889999999999
Q 005598          526 RSGAIGPLVDLLGNGTPRGKKDAATALF  553 (689)
Q Consensus       526 ~~g~I~~Lv~LL~~~~~~v~~~Al~aL~  553 (689)
                      ...+++.|..++.+++..++..|+.+|.
T Consensus        82 ~~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          82 GERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             CCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             6114999999882998999999999987

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00012  Score=42.44  Aligned_cols=45  Identities=22%  Similarity=0.418  Sum_probs=33.6

Q ss_pred             CCCCCCCCCCCC--C-CEECCCCCCCCHHHHHHHHHC----CCC---CCCCCCCC
Q ss_conf             422656521266--9-532588961048889999961----999---99999976
Q 005598          100 DFCCPLSLELMT--D-PVIVASGQTYERAFIKKWIDL----GLF---VCPKTRQT  144 (689)
Q Consensus       100 ~~~CPI~~~lm~--d-PV~~~~G~ty~r~~I~~~l~~----~~~---~cP~t~~~  144 (689)
                      ...||||++.+.  + |+.+.|||.||+.||..|+..    +..   +||.++.+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~   59 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACP   59 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred             CCCCCCCCCCCCCCCEEEECCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             9849317983607755777899998488179999999985179665589199988

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.0052  Score=32.38  Aligned_cols=239  Identities=13%  Similarity=0.094  Sum_probs=152.9

Q ss_pred             HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC-CCCH----HHHHHC-CCHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf             99539399999965389999999999999995169-8308----999971-89999999774799999999999998501
Q 005598          442 IANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK----SAIANA-NAIEPLIHVLQTGSPEARENAAATLFSLS  515 (689)
Q Consensus       442 i~~~g~I~~Li~lL~s~~~~v~e~Al~aL~nLs~~-~~~k----~~i~~~-g~i~~Li~lL~s~~~~~r~~Aa~aL~nLs  515 (689)
                      +...+.+..|+..|..=+.+.+..++.+..++-.. ...+    ..+... ..+..|+.--.  +.++...+...|....
T Consensus        65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLREci  142 (330)
T d1upka_          65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECI  142 (330)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHH
T ss_pred             HHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHCC--CCCHHHHHHHHHHHHH
T ss_conf             99858499999857779971132299999999616789998608998839789999986328--8603235659999999


Q ss_pred             CCCHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH-CHHHHHHHHHH---CCHHHHHHHC-CCCHHHHHHHHH
Q ss_conf             683258898850875999985049998899999999996312-30789999982---7099999813-999479999999
Q 005598          516 VIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQA---GAVKHLVDLM-DPAAGMVDKAVA  590 (689)
Q Consensus       516 ~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~~n~~~iv~~---G~v~~Lv~LL-~~~~~i~e~Al~  590 (689)
                      ..+.....|.....+..+.+++..++-++...|..++..|.. ++.....++..   ..+...-.+| +++--++..++.
T Consensus       143 k~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlK  222 (330)
T d1upka_         143 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK  222 (330)
T ss_dssp             TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             33999999973388999999973871588898999999999708899999999849999999999964884277998899


Q ss_pred             HHHHHHCCCHHHHHHHH----CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC---HHHHHHHHHC--CCHHHHHHHHH
Q ss_conf             99998279015999995----694999999960699999999999999994089---8659999948--99698999250
Q 005598          591 VLANLATIPDGRVAIGQ----ENGIPVLVEVVELGSARGKENAAAALLQLCTNS---SRFCSMVLQE--GAVPPLVALSQ  661 (689)
Q Consensus       591 ~L~nLa~~~~~r~~i~~----~g~i~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~---~~~~~~iv~~--g~i~~L~~LL~  661 (689)
                      .|+.+.....+...+..    ..-+..++.+|++.+..++..|..+.--...+.   +.....+...  ..+..|-....
T Consensus       223 LLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f~~  302 (330)
T d1upka_         223 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQN  302 (330)
T ss_dssp             HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999865567999999967888899999982173133779866585530118999779999999839999999986788


Q ss_pred             CC--CHHHHHHHHHHHHHHHCCC
Q ss_conf             69--9899999999999946085
Q 005598          662 SG--TPRAKEKAQALLSYFRNQR  682 (689)
Q Consensus       662 ~~--~~~vk~~A~~lL~~L~~~~  682 (689)
                      +.  ++.-...=..+++.+...+
T Consensus       303 d~~~DeqF~~EK~~lI~~I~~L~  325 (330)
T d1upka_         303 DRTEDEQFNDEKTYLVKQIRDLK  325 (330)
T ss_dssp             TC-CCSHHHHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             88731407899999999998488

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.69  E-value=0.00096  Score=36.86  Aligned_cols=43  Identities=12%  Similarity=0.006  Sum_probs=22.7

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             99999960699999999999999994089865999994899698999250699899999999
Q 005598          612 PVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQA  673 (689)
Q Consensus       612 ~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~iv~~g~i~~L~~LL~~~~~~vk~~A~~  673 (689)
                      +.|..++...+..++..++.                  . ..+.++..|...++.+++.|..
T Consensus       189 ~~L~~l~~D~d~~VR~aaae------------------~-~~~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         189 DDLLELLHDPDWTVRLAAVE------------------H-ASLEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             GGGGGGGGCSSHHHHHHHHH------------------H-SCHHHHHHCCCCCHHHHHHHHC
T ss_pred             HHHHHHHHCCCHHHHHHHHH------------------H-CCHHHHHHHCCCCHHHHHHHHH
T ss_conf             99999873998899999997------------------0-6399999867999999999997

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.06  E-value=0.0044  Score=32.80  Aligned_cols=20  Identities=5%  Similarity=-0.087  Sum_probs=11.3

Q ss_pred             HHHHHHHCCCCHHHHHHHHH
Q ss_conf             99999960699999999999
Q 005598          612 PVLVEVVELGSARGKENAAA  631 (689)
Q Consensus       612 ~~Lv~lL~s~s~~~~e~Av~  631 (689)
                      +.++..|...++.+++.|+.
T Consensus       212 ~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         212 LEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             HHHHHHCCCCCHHHHHHHHC
T ss_pred             HHHHHHHCCCCHHHHHHHHH
T ss_conf             99999867999999999997

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.60  E-value=0.31  Score=21.60  Aligned_cols=117  Identities=19%  Similarity=0.233  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHH-CCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC---HHH----------HHHHH
Q ss_conf             9999999999995169830899997-189999999774799999999999998501683---258----------89885
Q 005598          461 KIQENAVTALLNLSINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIE---DNK----------IKIGR  526 (689)
Q Consensus       461 ~v~e~Al~aL~nLs~~~~~k~~i~~-~g~i~~Li~lL~s~~~~~r~~Aa~aL~nLs~~~---~~k----------~~I~~  526 (689)
                      ..+..++.+|..+.....+...+.. ..++..|+..|.++...++..|+.+|..++...   +.-          ....+
T Consensus        71 ~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e  150 (343)
T d2bnxa1          71 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE  150 (343)
T ss_dssp             HHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             88999999999983648999999818499999997259984589999999999997425787449999999899987557


Q ss_pred             HCCHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCHH-------HHHHHHHHCCHHHHHHH
Q ss_conf             08759999850499-98899999999996312307-------89999982709999981
Q 005598          527 SGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHE-------NKARIVQAGAVKHLVDL  577 (689)
Q Consensus       527 ~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~~-------n~~~iv~~G~v~~Lv~L  577 (689)
                      .+-+..+++.|+.+ +...+..++..+-.|....+       .+..+...|..+.+-++
T Consensus       151 ~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l  209 (343)
T d2bnxa1         151 VERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL  209 (343)
T ss_dssp             SCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             78689999987464648899999999999983953499999999999988829999998