Citrus Sinensis ID: 005605

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------69

MGTERKRKVSLFDVVDETSVSAKLVKTNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDVRGEW

cccHHHHHccccccccccHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccEEEEEEcccccccccHHHHHHHcccccccccccccEEEEccccccHHHHHHHHHHHHHcccccccccEEEEccccccccccEEEcccHHHHHHHccccccccccEEEEEccccccHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHcccccccEEEEccccccccEEEcccccHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHccccccccccccccccccEEEEEccccccEEEcccEEEEEcccccccccccccccccEEEEcccHHHHHHHHccccccccccEEEEcccHHHHHccccccccccHHccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHccccccccHHHHHHccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccccccccccEEEccccEEEEEEccccccccccEEEEEEEEcccccccEEcccccccc

cccccccccccccccccccccHHHHccccccHHHccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHcccccccccccccEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEEEccccccccEEEEcccHHHHHHHHccccHHHcEEEEEccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHccccEEEcccccccEEEEEccccHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccHHHHHHHccccccccccccccccEEEEEEEEEEEEEEEccEEEEEcccccccccccccccccEEEEccHcHHHHHHHcccccccccccEEEEEcHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHcccccEEccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccEEEEccccHccccccEEEEEEEEEEcHHHHHEHEcccccc

mgterkrkVSLFDVVDETSVSAKLvktngvgpgammnnnnslinrwngkpysQRYYEILEkrkslpvwQQKEEFLQVLKANQVIILVGetgsgkttqipqfvlegvdietpDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVlknrpdlkLVVMSATLEAEKfqgyfygaplmkvpgrlhpveifytqepERDYLEAAIRTVVQIhmcepsgdiLVFLTGEEEIEDACRKITKEITnmgdqvgpvkvvplystlppamqqkifepapppskeggppgrkivvstniaetsltidgivyvidpgfakqkvynprvrvesllvspiskasahqrsgragrtqpgkcfrlyteksfnndlqpqtypeiLRSNLANTVLTLKKlgiddlvhfdfmdppapETLMRALEVLNYLgaldddgnltemgekmsefpldpqmskmlvespkyncsneILSISAMlsvpncfvrpreAQKAADEAKARfghidgdhlTLLNVYHAYkqnnedpswcydnfvnhralksADNVRQQLVRIMARFNLKlcsndfnsrDYYVNIRKAMLAGYFMQVAHLertgqyltvkdnqvvhlhpsncldhkpewviYNEYVLTSRNFIRTVTDVRGEW

mgterkrkvslfdvvdetsvsaklvktngvgpgammnnnnslinrwnGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGetgsgkttqipqfvlegvdietpdrrRKMMiactqprrvaamsvsrrvAEEMdvtigeevgysirfedcsSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEitnmgdqvgpvKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVspiskasahqrsgragrtqpgKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFnlklcsndfnSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLhpsncldhkpeWVIYNEyvltsrnfirtvtdvrgew

MGTERKRKVSLFDVVDETSVSAKLVKTNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPrrvaamsvsrrvaEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEpapppskeggppgRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDVRGEW

**********LFDVVDETSVSAKLVKTNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYST**************************IVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLV*********************KCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDD****************************KYNCSNEILSISAMLSVPNCFVRP*********AKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTD*****

************************************************************KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKI*************VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFV***************FGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKL****FNSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDVRGEW

********VSLFDVVDETSVSAKLVKTNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPA*********PGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI***************QPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPR*********KARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDVRGEW

******************************************INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKAS************PGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDVRGE*

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		688	2.2.26 [Sep-21-2011]
O22899		729	Probable pre-mRNA-splicin	no	no	1.0	0.943	0.872	0.0
Q5RAZ4		795	Putative pre-mRNA-splicin	yes	no	0.933	0.807	0.720	0.0
O35286		795	Putative pre-mRNA-splicin	yes	no	0.933	0.807	0.720	0.0
O43143		795	Putative pre-mRNA-splicin	yes	no	0.933	0.807	0.720	0.0
Q20875		739	Putative pre-mRNA-splicin	yes	no	0.937	0.872	0.691	0.0
O42945		735	Probable pre-mRNA-splicin	yes	no	0.928	0.869	0.671	0.0
Q54NJ4		727	Putative pre-mRNA-splicin	yes	no	0.921	0.872	0.659	0.0
P53131		767	Pre-mRNA-splicing factor	yes	no	0.922	0.827	0.641	0.0
O17438		455	Putative pre-mRNA-splicin	no	no	0.659	0.997	0.763	0.0
Q54F05		1160	ATP-dependent RNA helicas	no	no	0.892	0.529	0.534	0.0

>sp\|O22899\|DHX15_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1	Back alignment and function desciption

 Score = 1267 bits (3279), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/688 (87%), Positives = 649/688 (94%)

Query: 1   MGTERKRKVSLFDVVDETSVSAKLVKTNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILE 60
           MGTERKRKVSLFDV+++ S+S+K  K+NG+G  A     ++LIN+WNGK YSQRY+EILE
Sbjct: 1   MGTERKRKVSLFDVMEDPSLSSKNTKSNGLGLAAAAGGGSNLINKWNGKAYSQRYFEILE 60

Query: 61  KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120
           KR+ LPVW QK++FL  L +NQ +ILVGETGSGKTTQIPQFVL+ V  +  D+ RK ++ 
Sbjct: 61  KRRDLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKGRKWLVG 120

Query: 121 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP 180
           CTQPRRVAAMSVSRRVA+EMDV+IGEEVGYSIRFEDC+S+RT+LKYLTDGMLLREAM DP
Sbjct: 121 CTQPRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLREAMADP 180

Query: 181 LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPL 240
           LLERYKVI+LDEAHERTLATDVLFGLLKEVL+NRPDLKLVVMSATLEAEKFQ YF GAPL
Sbjct: 181 LLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPL 240

Query: 241 MKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKIT 300
           MKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEP GDILVFLTGEEEIEDACRKI 
Sbjct: 241 MKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKIN 300

Query: 301 KEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLT 360
           KE++N+GDQVGPVKVVPLYSTLPPAMQQKIF+PAP P  EGGP GRKIVVSTNIAETSLT
Sbjct: 301 KEVSNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSLT 360

Query: 361 IDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKS 420
           IDGIVYVIDPGFAKQKVYNPR+RVESLLVSPISKASAHQRSGRAGRT+PGKCFRLYTEKS
Sbjct: 361 IDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKS 420

Query: 421 FNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL 480
           FNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL
Sbjct: 421 FNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL 480

Query: 481 DDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKA 540
           DD+GNLT+ GE MSEFPLDPQMSKML+ SP++NCSNEILS+SAMLSVPNCFVRPREAQKA
Sbjct: 481 DDEGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKA 540

Query: 541 ADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMA 600
           ADEAKARFGHIDGDHLTLLNVYHAYKQNNEDP+WC++NFVN+RA+KSADNVRQQLVRIM+
Sbjct: 541 ADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPNWCFENFVNNRAMKSADNVRQQLVRIMS 600

Query: 601 RFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLDH 660
           RFNLK+CS DFNSRDYYVNIRKAMLAGYFMQVAHLERTG YLTVKDNQVVHLHPSNCLDH
Sbjct: 601 RFNLKMCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDH 660

Query: 661 KPEWVIYNEYVLTSRNFIRTVTDVRGEW 688
           KPEWVIYNEYVLT+RNFIRTVTD+RGEW
Sbjct: 661 KPEWVIYNEYVLTTRNFIRTVTDIRGEW 688

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3

>sp\|Q5RAZ4\|DHX15_PONAB Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Pongo abelii GN=DHX15 PE=2 SV=2	Back alignment and function description

>sp\|O35286\|DHX15_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Mus musculus GN=Dhx15 PE=2 SV=2	Back alignment and function description

>sp\|O43143\|DHX15_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2	Back alignment and function description

>sp\|Q20875\|DHX15_CAEEL Putative pre-mRNA-splicing factor ATP-dependent RNA helicase F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1	Back alignment and function description

>sp\|O42945\|DHX15_SCHPO Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp43 PE=3 SV=1	Back alignment and function description

>sp\|Q54NJ4\|DHX15_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1	Back alignment and function description

>sp\|P53131\|PRP43_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP43 PE=1 SV=1	Back alignment and function description

>sp\|O17438\|DHX15_STRPU Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 (Fragment) OS=Strongylocentrotus purpuratus GN=PRP1 PE=2 SV=1	Back alignment and function description

>sp\|Q54F05\|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		688
255548377		731	ATP-dependent RNA helicase, putative [Ri	0.998	0.939	0.929	0.0
225437618		728	PREDICTED: probable pre-mRNA-splicing fa	0.998	0.943	0.934	0.0
356499785		722	PREDICTED: probable pre-mRNA-splicing fa	0.989	0.943	0.933	0.0
357442187		721	ATP-dependent RNA helicase-like protein	0.988	0.943	0.924	0.0
356572811		721	PREDICTED: probable pre-mRNA-splicing fa	0.988	0.943	0.921	0.0
356505645		720	PREDICTED: probable pre-mRNA-splicing fa	0.986	0.943	0.924	0.0
224130944		728	predicted protein [Populus trichocarpa]	0.998	0.943	0.902	0.0
449436399		732	PREDICTED: probable pre-mRNA-splicing fa	1.0	0.939	0.908	0.0
224064627		728	predicted protein [Populus trichocarpa]	0.998	0.943	0.917	0.0
15228730		726	pre-mRNA-splicing factor ATP-dependent R	0.994	0.942	0.885	0.0

>gi\|255548377\|ref\|XP_002515245.1\| ATP-dependent RNA helicase, putative [Ricinus communis] gi\|223545725\|gb\|EEF47229.1\| ATP-dependent RNA helicase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1345 bits (3480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/691 (92%), Positives = 667/691 (96%), Gaps = 4/691 (0%)

Query: 1   MGTERKRKVSLFDVVDETSVSAKLVKTNGVGPGAMMNNN---NSLINRWNGKPYSQRYYE 57
           MGT+RKRKVSLFDVVDETSVSAK+ K+NG G GA MNNN   NSLIN WNGKPYSQRYYE
Sbjct: 1   MGTDRKRKVSLFDVVDETSVSAKIAKSNG-GGGAAMNNNGSSNSLINSWNGKPYSQRYYE 59

Query: 58  ILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKM 117
           ILEKRK+LPVW QKEEFL VLK NQV+ILVGETGSGKTTQIPQFVLE VDIETPD+RRKM
Sbjct: 60  ILEKRKTLPVWHQKEEFLSVLKKNQVLILVGETGSGKTTQIPQFVLEAVDIETPDKRRKM 119

Query: 118 MIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAM 177
           MIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSA+TVLKYLTDGMLLREAM
Sbjct: 120 MIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLTDGMLLREAM 179

Query: 178 TDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYG 237
           TDPLLERYKVI+LDEAHERTLATDVLFGLLKEVL+NRPDLKLVVMSATLEAEKFQGYF  
Sbjct: 180 TDPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFND 239

Query: 238 APLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACR 297
           APLM+VPGRLHPVEIFYTQ+PERDYLEAAIRTVVQIHMCEP GDILVFLTGEEEIEDACR
Sbjct: 240 APLMRVPGRLHPVEIFYTQDPERDYLEAAIRTVVQIHMCEPLGDILVFLTGEEEIEDACR 299

Query: 298 KITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357
           KITKEI+NMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPP  EGGP GRKIVVSTNIAET
Sbjct: 300 KITKEISNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPLNEGGPAGRKIVVSTNIAET 359

Query: 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYT 417
           SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYT
Sbjct: 360 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYT 419

Query: 418 EKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYL 477
           EKSF+ DLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALE+LNYL
Sbjct: 420 EKSFHQDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEMLNYL 479

Query: 478 GALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREA 537
           GALDDDGNLT++GE MSEFPLDPQM+KMLV SP++NCSNEILS+SAMLSVPNCFVRPREA
Sbjct: 480 GALDDDGNLTKLGEIMSEFPLDPQMAKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREA 539

Query: 538 QKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVR 597
           QKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCY+NF+NHRALK+ADNVRQQLVR
Sbjct: 540 QKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFINHRALKAADNVRQQLVR 599

Query: 598 IMARFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNC 657
           IM RFNLKLCS DFNSRDYYVNIRKAMLAGYFMQVAHLERTG YLTVKDNQVVHLHPSNC
Sbjct: 600 IMTRFNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNC 659

Query: 658 LDHKPEWVIYNEYVLTSRNFIRTVTDVRGEW 688
           LDHKPEWVIY+EYVLTSRNFIRTVTD+RGEW
Sbjct: 660 LDHKPEWVIYSEYVLTSRNFIRTVTDIRGEW 690

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225437618\|ref\|XP_002278247.1\| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Vitis vinifera] gi\|147787427\|emb\|CAN64445.1\| hypothetical protein VITISV_036050 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356499785\|ref\|XP_003518717.1\| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Glycine max]	Back alignment and taxonomy information

>gi\|357442187\|ref\|XP_003591371.1\| ATP-dependent RNA helicase-like protein [Medicago truncatula] gi\|355480419\|gb\|AES61622.1\| ATP-dependent RNA helicase-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356572811\|ref\|XP_003554559.1\| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356505645\|ref\|XP_003521600.1\| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Glycine max]	Back alignment and taxonomy information

>gi\|224130944\|ref\|XP_002320963.1\| predicted protein [Populus trichocarpa] gi\|222861736\|gb\|EEE99278.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449436399\|ref\|XP_004135980.1\| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Cucumis sativus] gi\|449515243\|ref\|XP_004164659.1\| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224064627\|ref\|XP_002301528.1\| predicted protein [Populus trichocarpa] gi\|222843254\|gb\|EEE80801.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi|15228730|ref|NP_191790.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana] gi|7340702|emb|CAB82945.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gi|21539575|gb|AAM53340.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gi|34098783|gb|AAQ56774.1| At3g62310 [Arabidopsis thaliana] gi|332646816|gb|AEE80337.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		688
TAIR\|locus:2095989		726	AT3G62310 [Arabidopsis thalian	0.994	0.942	0.851	0.0
TAIR\|locus:2065210		729	AT2G47250 [Arabidopsis thalian	1.0	0.943	0.840	0.0
FB\|FBgn0033160		729	CG11107 [Drosophila melanogast	0.944	0.891	0.703	1.2e-253
UNIPROTKB\|F1NHI3		762	DHX15 "Uncharacterized protein	0.979	0.884	0.667	2e-250
UNIPROTKB\|A5D7D9		795	DHX15 "Uncharacterized protein	0.933	0.807	0.692	2.6e-250
UNIPROTKB\|E2R2U3		795	DHX15 "Uncharacterized protein	0.933	0.807	0.692	2.6e-250
UNIPROTKB\|O43143		795	DHX15 "Putative pre-mRNA-splic	0.933	0.807	0.692	2.6e-250
UNIPROTKB\|F1S5A8		795	DHX15 "Uncharacterized protein	0.933	0.807	0.692	2.6e-250
MGI\|MGI:1099786		795	Dhx15 "DEAH (Asp-Glu-Ala-His)	0.933	0.807	0.692	2.6e-250
RGD\|1308072		795	Dhx15 "DEAH (Asp-Glu-Ala-His)	0.933	0.807	0.692	2.6e-250

TAIR\|locus:2095989 AT3G62310 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3090 (1092.8 bits), Expect = 0., P = 0.
 Identities = 586/688 (85%), Positives = 628/688 (91%)

Query:     1 MGTERKRKVSLFDVVDETSVSAKLVKTNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILE 60
             MGTERKRK+SLFDV+D+ S  AK  KT+G+  G +    NSLIN+WNGKPYSQRYY+ILE
Sbjct:     1 MGTERKRKISLFDVMDDPSAPAKNAKTSGLPDGGI----NSLINKWNGKPYSQRYYDILE 56

Query:    61 KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120
             KR++LPVW QKEEFL+ L  NQ +ILVGETGSGKTTQIPQFV++ VD ET D+RRK ++ 
Sbjct:    57 KRRTLPVWLQKEEFLKTLNNNQTLILVGETGSGKTTQIPQFVIDAVDAETSDKRRKWLVG 116

Query:   121 CTQPXXXXXXXXXXXXXEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP 180
             CTQP             EEMDVTIGEEVGYSIRFEDCSS RTVLKYLTDGMLLREAM DP
Sbjct:   117 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSPRTVLKYLTDGMLLREAMADP 176

Query:   181 LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPL 240
             LLERYKVI+LDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQ YF GAPL
Sbjct:   177 LLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQDYFSGAPL 236

Query:   241 MKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKIT 300
             MKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEP GDILVFLTGEEEIEDACRKI 
Sbjct:   237 MKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKIN 296

Query:   301 KEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEXXXXXXXXXXXXXRKIVVSTNIAETSLT 360
             KE+ N+GDQVGP+KVVPLYSTLPPAMQQKIF+             RKIVVSTNIAETSLT
Sbjct:   297 KEVGNLGDQVGPIKVVPLYSTLPPAMQQKIFDPAPEPVTEGGPPGRKIVVSTNIAETSLT 356

Query:   361 IDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKS 420
             IDGIVYVIDPGFAKQKVYNPR+RVESLLVSPISKASAHQRSGRAGRT+PGKCFRLYTEKS
Sbjct:   357 IDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKS 416

Query:   421 FNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL 480
             FNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL
Sbjct:   417 FNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL 476

Query:   481 DDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKA 540
             DDDGNLT+ GE MSEFPLDPQM+KML+ SP++NCSNEILS+SAMLSVPNCF+RPREAQKA
Sbjct:   477 DDDGNLTKTGEIMSEFPLDPQMAKMLIVSPEFNCSNEILSVSAMLSVPNCFIRPREAQKA 536

Query:   541 ADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMA 600
             ADEAKARFGHI+GDHLTLLNVYHA+KQNNEDP+WCY+NF+N+RA+KSADNVRQQLVRIM+
Sbjct:   537 ADEAKARFGHIEGDHLTLLNVYHAFKQNNEDPNWCYENFINNRAMKSADNVRQQLVRIMS 596

Query:   601 RFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLDH 660
             RFNLK+CS DFNSRDYY+NIRKAMLAGYFMQVAHLERTG YLTVKDNQVVHLHPSNCLDH
Sbjct:   597 RFNLKMCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDH 656

Query:   661 KPEWVIYNEYVLTSRNFIRTVTDVRGEW 688
             KPEWVIYNEYVLTSRNFIRTVTD+RGEW
Sbjct:   657 KPEWVIYNEYVLTSRNFIRTVTDIRGEW 684

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003724 "RNA helicase activity" evidence=ISS

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR\|locus:2065210 AT2G47250 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

FB\|FBgn0033160 CG11107 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NHI3 DHX15 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|A5D7D9 DHX15 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R2U3 DHX15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|O43143 DHX15 "Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S5A8 DHX15 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:1099786 Dhx15 "DEAH (Asp-Glu-Ala-His) box polypeptide 15" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1308072 Dhx15 "DEAH (Asp-Glu-Ala-His) box polypeptide 15" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q20875	DHX15_CAEEL	3, ., 6, ., 4, ., 1, 3	0.6918	0.9375	0.8728	yes	no
Q54NJ4	DHX15_DICDI	3, ., 6, ., 4, ., 1, 3	0.6595	0.9215	0.8720	yes	no
Q5RAZ4	DHX15_PONAB	3, ., 6, ., 4, ., 1, 3	0.7202	0.9331	0.8075	yes	no
O35286	DHX15_MOUSE	3, ., 6, ., 4, ., 1, 3	0.7202	0.9331	0.8075	yes	no
P53131	PRP43_YEAST	3, ., 6, ., 4, ., 1, 3	0.6413	0.9229	0.8279	yes	no
O43143	DHX15_HUMAN	3, ., 6, ., 4, ., 1, 3	0.7202	0.9331	0.8075	yes	no
O22899	DHX15_ARATH	3, ., 6, ., 4, ., 1, 3	0.8720	1.0	0.9437	no	no
O42945	DHX15_SCHPO	3, ., 6, ., 4, ., 1, 3	0.6712	0.9287	0.8693	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.13	0.946
3rd Layer	3.6.4	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028144001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_42, whole genome shotgun sequence); (728 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)	•	•	•	0.449
	GSVIVG00034559001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)	•	•	•	0.427
	GSVIVG00037695001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)	•	•	•	0.404

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		688
COG1643		845	COG1643, HrpA, HrpA-like helicases [DNA replicatio	0.0
TIGR01967		1283	TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H	1e-164
PRK11131		1294	PRK11131, PRK11131, ATP-dependent RNA helicase Hrp	1e-151
TIGR01970		819	TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H	7e-98
PRK11664		812	PRK11664, PRK11664, ATP-dependent RNA helicase Hrp	4e-87
pfam04408		91	pfam04408, HA2, Helicase associated domain (HA2)	5e-40
smart00847		82	smart00847, HA2, Helicase associated domain (HA2)	8e-31
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	1e-30
pfam07717		109	pfam07717, OB_NTP_bind, Oligonucleotide/oligosacch	3e-29
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	7e-26
PHA02653		675	PHA02653, PHA02653, RNA helicase NPH-II; Provision	1e-13
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	4e-13
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	3e-11
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	3e-09
pfam00270		169	pfam00270, DEAD, DEAD/DEAH box helicase	6e-04
smart00962		197	smart00962, SRP54, SRP54-type protein, GTPase doma	0.002

>gnl\|CDD\|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

 Score =  744 bits (1922), Expect = 0.0
 Identities = 282/679 (41%), Positives = 389/679 (57%), Gaps = 58/679 (8%)

Query: 39  NNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQI 98
           N    +  + +  S    +ILE R  LPV   ++E L+ ++ NQV+I+VGETGSGKTTQ+
Sbjct: 23  NQVRGSGMDARSRSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQL 82

Query: 99  PQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS 158
           PQF+LE              I CTQPRR+AA SV+ RVAEE+   +GE VGYSIRFE   
Sbjct: 83  PQFLLEE------GLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKV 136

Query: 159 SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DL 217
           S RT +K +TDG+LLRE   DPLL  Y V+++DEAHER+L TD+L GLLK++L  R  DL
Sbjct: 137 SPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDL 196

Query: 218 KLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDY-LEAAIRTVVQIHMC 276
           KL++MSATL+AE+F  YF  AP++++ GR +PVEI Y  E E DY L  AI   V IH+ 
Sbjct: 197 KLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLR 256

Query: 277 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGP-VKVVPLYSTLPPAMQQKIFEPAP 335
           E SG ILVFL G+ EIE     +         ++G  ++++PLY  L    Q ++FEPAP
Sbjct: 257 EGSGSILVFLPGQREIERTAEWL------EKAELGDDLEILPLYGALSAEEQVRVFEPAP 310

Query: 336 PPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKA 395
                     RK+V++TNIAETSLTI GI YVID G AK+K Y+PR  +  L   PISKA
Sbjct: 311 GGK-------RKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKA 363

Query: 396 SAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGID-DLV 454
           SA QR+GRAGRT PG C+RLY+E+ F       T PEILR++L+  VL LK LGI  D+ 
Sbjct: 364 SADQRAGRAGRTGPGICYRLYSEEDF-LAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIA 422

Query: 455 HFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNC 514
            F F+DPP    +  AL +L  LGALDD G LT +G++MS  PLDP++++ML+ +P+  C
Sbjct: 423 PFPFLDPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGC 482

Query: 515 SNEILSISAMLSVPNC------FVRPREAQKAADEAK-ARF---GHIDGDHLTLLNVYHA 564
             E  +I++MLS  +        V+ R+ + A D  K  +        GDHL LL  +  
Sbjct: 483 LGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPD 542

Query: 565 YKQNNEDP------SWCYDNFVNHRALKSADNVRQQLVRIMAR-FNLKLCSNDFNSRD-- 615
                         + C       +AL  A  +   L+   +      L + + +  +  
Sbjct: 543 RIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWA 602

Query: 616 ------------YYVNIRKAMLAGYFMQVAHLE-RTGQYLTVKDNQVVHLHPSNCLD--H 660
                        + +IR A+ AG  + +A L+     Y+T+ DN  V  HPS+      
Sbjct: 603 AQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQLDGRPYVTLSDNTPVFAHPSSVRLGLV 662

Query: 661 KPEWVIYNEYVLTSRNFIR 679
             EW+ Y E++ T + ++R
Sbjct: 663 LLEWIKYAEFLRTRKGYLR 681

Length = 845

>gnl\|CDD\|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA	Back alignment and domain information

>gnl\|CDD\|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>gnl\|CDD\|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB	Back alignment and domain information

>gnl\|CDD\|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>gnl\|CDD\|218070 pfam04408, HA2, Helicase associated domain (HA2)	Back alignment and domain information

>gnl\|CDD\|214852 smart00847, HA2, Helicase associated domain (HA2) Add an annotation	Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|219532 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding (OB)-fold	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl\|CDD\|215832 pfam00270, DEAD, DEAD/DEAH box helicase	Back alignment and domain information

>gnl\|CDD\|214940 smart00962, SRP54, SRP54-type protein, GTPase domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		688
KOG0922		674	consensus DEAH-box RNA helicase [RNA processing an	100.0
KOG0925		699	consensus mRNA splicing factor ATP-dependent RNA h	100.0
KOG0924		1042	consensus mRNA splicing factor ATP-dependent RNA h	100.0
KOG0923		902	consensus mRNA splicing factor ATP-dependent RNA h	100.0
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	100.0
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	100.0
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	100.0
KOG0920		924	consensus ATP-dependent RNA helicase A [RNA proces	100.0
KOG0926		1172	consensus DEAH-box RNA helicase [RNA processing an	100.0
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	100.0
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	100.0
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	100.0
PHA02653		675	RNA helicase NPH-II; Provisional	100.0
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	100.0
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	100.0
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	100.0
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	100.0
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0343		758	consensus RNA Helicase [RNA processing and modific	100.0
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	100.0
PTZ00110		545	helicase; Provisional	100.0
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	100.0
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	100.0
KOG0326		459	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	100.0
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	100.0
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	100.0
PRK01172		674	ski2-like helicase; Provisional	100.0
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	100.0
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	100.0
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	100.0
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	100.0
PRK02362		737	ski2-like helicase; Provisional	100.0
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	100.0
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	100.0
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	100.0
PTZ00424		401	helicase 45; Provisional	100.0
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0332		477	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0347		731	consensus RNA helicase [RNA processing and modific	100.0
PRK00254		720	ski2-like helicase; Provisional	100.0
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	100.0
KOG0346		569	consensus RNA helicase [RNA processing and modific	100.0
KOG0327		397	consensus Translation initiation factor 4F, helica	100.0
KOG0334		997	consensus RNA helicase [RNA processing and modific	100.0
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	100.0
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	100.0
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	100.0
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	100.0
KOG4284		980	consensus DEAD box protein [Transcription]	100.0
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	100.0
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	100.0
PRK13767		876	ATP-dependent helicase; Provisional	99.98
COG1202		830	Superfamily II helicase, archaea-specific [General	99.97
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.97
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.97
COG1201		814	Lhr Lhr-like helicases [General function predictio	99.96
PRK10689		1147	transcription-repair coupling factor; Provisional	99.96
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.96
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.96
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.95
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	99.95
COG1204		766	Superfamily II helicase [General function predicti	99.95
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.95
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.94
PRK09401		1176	reverse gyrase; Reviewed	99.94
KOG0329		387	consensus ATP-dependent RNA helicase [RNA processi	99.93
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.92
PRK14701		1638	reverse gyrase; Provisional	99.92
KOG0349		725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	99.92
COG1205		851	Distinct helicase family with a unique C-terminal	99.92
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.91
PHA02558		501	uvsW UvsW helicase; Provisional	99.91
PRK13766		773	Hef nuclease; Provisional	99.91
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.91
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.91
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.9
KOG0354		746	consensus DEAD-box like helicase [General function	99.89
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.88
PRK09694		878	helicase Cas3; Provisional	99.87
PRK05580		679	primosome assembly protein PriA; Validated	99.85
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	99.85
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	99.85
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	99.85
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	99.84
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	99.83
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	99.82
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.81
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	99.78
PF04408		102	HA2: Helicase associated domain (HA2); InterPro: I	99.76
PRK04914		956	ATP-dependent helicase HepA; Validated	99.76
PF07717		114	OB_NTP_bind: Oligonucleotide/oligosaccharide-bindi	99.76
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	99.74
KOG0353		695	consensus ATP-dependent DNA helicase [General func	99.73
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.71
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	99.7
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	99.69
smart00847		92	HA2 Helicase associated domain (HA2) Add an annota	99.68
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	99.67
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.66
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.66
PRK12904		830	preprotein translocase subunit SecA; Reviewed	99.65
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	99.64
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	99.63
KOG0950		1008	consensus DNA polymerase theta/eta, DEAD-box super	99.63
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	99.62
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	99.61
PRK05298		652	excinuclease ABC subunit B; Provisional	99.57
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	99.55
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	99.53
PRK13107		908	preprotein translocase subunit SecA; Reviewed	99.51
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.5
COG1116		248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.49
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	99.47
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	99.45
COG1126		240	GlnQ ABC-type polar amino acid transport system, A	99.45
KOG4150		1034	consensus Predicted ATP-dependent RNA helicase [RN	99.45
COG1136		226	SalX ABC-type antimicrobial peptide transport syst	99.45
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.41
COG1135		339	AbcC ABC-type metal ion transport system, ATPase c	99.41
COG1121		254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.4
COG1120		258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.39
COG1117		253	PstB ABC-type phosphate transport system, ATPase c	99.36
COG1124		252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.33
COG3839		338	MalK ABC-type sugar transport systems, ATPase comp	99.32
COG3638		258	ABC-type phosphate/phosphonate transport system, A	99.26
COG4525		259	TauB ABC-type taurine transport system, ATPase com	99.26
COG1127		263	Ttg2A ABC-type transport system involved in resist	99.25
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.24
COG1125		309	OpuBA ABC-type proline/glycine betaine transport s	99.24
COG2884		223	FtsE Predicted ATPase involved in cell division [C	99.24
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	99.23
COG3842		352	PotA ABC-type spermidine/putrescine transport syst	99.21
TIGR02314		343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.21
TIGR01186		363	proV glycine betaine/L-proline transport ATP bindi	99.2
PRK11650		356	ugpC glycerol-3-phosphate transporter ATP-binding	99.2
COG1131		293	CcmA ABC-type multidrug transport system, ATPase c	99.2
PRK11432		351	fbpC ferric transporter ATP-binding subunit; Provi	99.19
COG1122		235	CbiO ABC-type cobalt transport system, ATPase comp	99.19
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	99.18
TIGR03265		353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.18
TIGR00960		216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.18
PRK09452		375	potA putrescine/spermidine ABC transporter ATPase	99.17
COG3840		231	ThiQ ABC-type thiamine transport system, ATPase co	99.17
cd03255		218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.17
PRK11607		377	potG putrescine transporter ATP-binding subunit; P	99.17
cd03226		205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.16
PRK13537		306	nodulation ABC transporter NodI; Provisional	99.16
cd03261		235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.16
cd03259		213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.16
cd03293		220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.15
cd03298		211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.15
COG1118		345	CysA ABC-type sulfate/molybdate transport systems,	99.15
PRK11000		369	maltose/maltodextrin transporter ATP-binding prote	99.15
PRK10851		353	sulfate/thiosulfate transporter subunit; Provision	99.15
cd03230		173	ABC_DR_subfamily_A This family of ATP-binding prot	99.14
cd03256		241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.14
TIGR02673		214	FtsE cell division ATP-binding protein FtsE. This	99.14
PRK13536		340	nodulation factor exporter subunit NodI; Provision	99.13
COG1198		730	PriA Primosomal protein N' (replication factor Y)	99.13
PRK11153		343	metN DL-methionine transporter ATP-binding subunit	99.13
TIGR01188		302	drrA daunorubicin resistance ABC transporter ATP-b	99.13
PRK10070		400	glycine betaine transporter ATP-binding subunit; P	99.12
TIGR02315		243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.12
COG0411		250	LivG ABC-type branched-chain amino acid transport	99.12
PRK11144		352	modC molybdate transporter ATP-binding protein; Pr	99.12
cd03229		178	ABC_Class3 This class is comprised of all BPD (Bin	99.11
PRK13543		214	cytochrome c biogenesis protein CcmA; Provisional	99.11
cd03258		233	ABC_MetN_methionine_transporter MetN (also known a	99.11
PRK09536		402	btuD corrinoid ABC transporter ATPase; Reviewed	99.11
cd03269		210	ABC_putative_ATPase This subfamily is involved in	99.11
PRK11629		233	lolD lipoprotein transporter ATP-binding subunit;	99.11
cd03296		239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.1
PRK10584		228	putative ABC transporter ATP-binding protein YbbA;	99.1
TIGR02211		221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.1
PRK12326		764	preprotein translocase subunit SecA; Reviewed	99.1
COG4555		245	NatA ABC-type Na+ transport system, ATPase compone	99.1
cd03266		218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.1
cd03301		213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.1
cd03265		220	ABC_DrrA DrrA is the ATP-binding protein component	99.1
cd03246		173	ABCC_Protease_Secretion This family represents the	99.09
PRK11247		257	ssuB aliphatic sulfonates transport ATP-binding su	99.09
TIGR01288		303	nodI ATP-binding ABC transporter family nodulation	99.09
cd03219		236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.09
TIGR01166		190	cbiO cobalt transport protein ATP-binding subunit.	99.09
cd03294		269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.09
TIGR03258		362	PhnT 2-aminoethylphosphonate ABC transport system,	99.09
KOG0953		700	consensus Mitochondrial RNA helicase SUV3, DEAD-bo	99.09
TIGR03608		206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.09
cd03215		182	ABC_Carb_Monos_II This family represents domain II	99.09
cd03262		213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.08
cd03292		214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.08
cd03268		208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.08
TIGR01277		213	thiQ thiamine ABC transporter, ATP-binding protein	99.08
PRK13650		279	cbiO cobalt transporter ATP-binding subunit; Provi	99.08
cd03225		211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.08
TIGR02142		354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.08
cd03224		222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.07
cd03235		213	ABC_Metallic_Cations ABC component of the metal-ty	99.07
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	99.07
PRK15079		331	oligopeptide ABC transporter ATP-binding protein O	99.07
cd03218		232	ABC_YhbG The ABC transporters belonging to the Yhb	99.07
PRK11831		269	putative ABC transporter ATP-binding protein YrbF;	99.07
PRK11248		255	tauB taurine transporter ATP-binding subunit; Prov	99.07
cd03237		246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.07
TIGR03864		236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.07
TIGR01184		230	ntrCD nitrate transport ATP-binding subunits C and	99.06
PRK10771		232	thiQ thiamine transporter ATP-binding subunit; Pro	99.06
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.06
PRK13637		287	cbiO cobalt transporter ATP-binding subunit; Provi	99.06
TIGR03522		301	GldA_ABC_ATP gliding motility-associated ABC trans	99.05
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	99.05
PRK11308		327	dppF dipeptide transporter ATP-binding subunit; Pr	99.05
PRK13647		274	cbiO cobalt transporter ATP-binding subunit; Provi	99.04
PRK10908		222	cell division protein FtsE; Provisional	99.04
COG1137		243	YhbG ABC-type (unclassified) transport system, ATP	99.04
COG0444		316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.04
PRK13538		204	cytochrome c biogenesis protein CcmA; Provisional	99.04
cd03295		242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.04
TIGR03415		382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.04
PRK13646		286	cbiO cobalt transporter ATP-binding subunit; Provi	99.04
PRK11300		255	livG leucine/isoleucine/valine transporter ATP-bin	99.04
PRK13635		279	cbiO cobalt transporter ATP-binding subunit; Provi	99.03
PRK11264		250	putative amino-acid ABC transporter ATP-binding pr	99.03
cd03257		228	ABC_NikE_OppD_transporters The ABC transporter sub	99.03
PRK11124		242	artP arginine transporter ATP-binding subunit; Pro	99.03
PRK13540		200	cytochrome c biogenesis protein CcmA; Provisional	99.03
PRK13634		290	cbiO cobalt transporter ATP-binding subunit; Provi	99.03
cd03232		192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.02
TIGR03411		242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.02
PRK13539		207	cytochrome c biogenesis protein CcmA; Provisional	99.02
PRK09493		240	glnQ glutamine ABC transporter ATP-binding protein	99.02
PRK10575		265	iron-hydroxamate transporter ATP-binding subunit;	99.01
cd03233		202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.01
COG4175		386	ProV ABC-type proline/glycine betaine transport sy	99.01
cd03213		194	ABCG_EPDR ABCG transporters are involved in eye pi	99.01
cd03247		178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.01
cd03223		166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.0
TIGR03740		223	galliderm_ABC gallidermin-class lantibiotic protec	99.0
PRK10895		241	lipopolysaccharide ABC transporter ATP-binding pro	99.0
PRK13651		305	cobalt transporter ATP-binding subunit; Provisiona	99.0
TIGR03005		252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.0
COG4096		875	HsdR Type I site-specific restriction-modification	99.0
cd03297		214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.0
cd03234		226	ABCG_White The White subfamily represents ABC tran	99.0
cd03231		201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.0
PRK13643		288	cbiO cobalt transporter ATP-binding subunit; Provi	99.0
cd03263		220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.99
TIGR01189		198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.99
PRK09984		262	phosphonate/organophosphate ester transporter subu	98.99
TIGR02982		220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.99
PRK13632		271	cbiO cobalt transporter ATP-binding subunit; Provi	98.99
TIGR02769		265	nickel_nikE nickel import ATP-binding protein NikE	98.99
PRK13644		274	cbiO cobalt transporter ATP-binding subunit; Provi	98.99
PRK10619		257	histidine/lysine/arginine/ornithine transporter su	98.99
PRK10247		225	putative ABC transporter ATP-binding protein YbbL;	98.99
PRK13548		258	hmuV hemin importer ATP-binding subunit; Provision	98.99
PRK15439		510	autoinducer 2 ABC transporter ATP-binding protein	98.98
PRK15093		330	antimicrobial peptide ABC transporter ATP-binding	98.98
TIGR03410		230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.98
PRK14250		241	phosphate ABC transporter ATP-binding protein; Pro	98.98
PRK13642		277	cbiO cobalt transporter ATP-binding subunit; Provi	98.98
PRK11614		237	livF leucine/isoleucine/valine transporter ATP-bin	98.98
PRK13652		277	cbiO cobalt transporter ATP-binding subunit; Provi	98.98
cd03238		176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.98
PRK10762		501	D-ribose transporter ATP binding protein; Provisio	98.98
PRK13631		320	cbiO cobalt transporter ATP-binding subunit; Provi	98.98
PRK10253		265	iron-enterobactin transporter ATP-binding protein;	98.98
PRK13636		283	cbiO cobalt transporter ATP-binding subunit; Provi	98.98
COG1123		539	ATPase components of various ABC-type transport sy	98.97
PRK13639		275	cbiO cobalt transporter ATP-binding subunit; Provi	98.97
cd03228		171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.97
PRK13633		280	cobalt transporter ATP-binding subunit; Provisiona	98.97
cd03264		211	ABC_drug_resistance_like ABC-type multidrug transp	98.97
cd03300		232	ABC_PotA_N PotA is an ABC-type transporter and the	98.97
cd03216		163	ABC_Carb_Monos_I This family represents the domain	98.96
PRK11022		326	dppD dipeptide transporter ATP-binding subunit; Pr	98.96
PRK09473		330	oppD oligopeptide transporter ATP-binding componen	98.96
PRK11231		255	fecE iron-dicitrate transporter ATP-binding subuni	98.96
PRK09700		510	D-allose transporter ATP-binding protein; Provisio	98.96
COG0410		237	LivF ABC-type branched-chain amino acid transport	98.96
PRK13641		287	cbiO cobalt transporter ATP-binding subunit; Provi	98.96
cd03217		200	ABC_FeS_Assembly ABC-type transport system involve	98.95
PRK09544		251	znuC high-affinity zinc transporter ATPase; Review	98.95
TIGR03873		256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.95
cd03299		235	ABC_ModC_like Archeal protein closely related to M	98.95
PRK13640		282	cbiO cobalt transporter ATP-binding subunit; Provi	98.95
TIGR03771		223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.95
TIGR00968		237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.94
PRK13541		195	cytochrome c biogenesis protein CcmA; Provisional	98.94
cd03267		236	ABC_NatA_like Similar in sequence to NatA, this is	98.93
PRK03695		248	vitamin B12-transporter ATPase; Provisional	98.93
PRK13645		289	cbiO cobalt transporter ATP-binding subunit; Provi	98.93
COG3845		501	ABC-type uncharacterized transport systems, ATPase	98.93
PRK10982		491	galactose/methyl galaxtoside transporter ATP-bindi	98.93
PRK13649		280	cbiO cobalt transporter ATP-binding subunit; Provi	98.93
COG4148		352	ModC ABC-type molybdate transport system, ATPase c	98.92
PRK13648		269	cbiO cobalt transporter ATP-binding subunit; Provi	98.92
PRK15112		267	antimicrobial peptide ABC system ATP-binding prote	98.92
PRK13638		271	cbiO cobalt transporter ATP-binding subunit; Provi	98.92
PRK10261		623	glutathione transporter ATP-binding protein; Provi	98.92
COG4181		228	Predicted ABC-type transport system involved in ly	98.91
cd03222		177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.91
PRK13549		506	xylose transporter ATP-binding subunit; Provisiona	98.91
COG4152		300	ABC-type uncharacterized transport system, ATPase	98.91
TIGR01187		325	potA spermidine/putrescine ABC transporter ATP-bin	98.9
PRK15056		272	manganese/iron transporter ATP-binding protein; Pr	98.9
PRK10419		268	nikE nickel transporter ATP-binding protein NikE;	98.9
TIGR01978		243	sufC FeS assembly ATPase SufC. SufC is part of the	98.89
TIGR02323		253	CP_lyasePhnK phosphonate C-P lyase system protein	98.89
cd03245		220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.89
PRK11288		501	araG L-arabinose transporter ATP-binding protein;	98.89
cd03214		180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.89
cd03260		227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.88
PRK11701		258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.88
KOG0949		1330	consensus Predicted helicase, DEAD-box superfamily	98.88
COG1123		539	ATPase components of various ABC-type transport sy	98.88
TIGR02324		224	CP_lyasePhnL phosphonate C-P lyase system protein	98.87
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	98.87
cd03369		207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.87
COG1119		257	ModF ABC-type molybdenum transport system, ATPase	98.87
cd03254		229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.87
cd03252		237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.87
COG4608		268	AppF ABC-type oligopeptide transport system, ATPas	98.86
PRK10261		623	glutathione transporter ATP-binding protein; Provi	98.86
COG2274		709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.86
cd03248		226	ABCC_TAP TAP, the Transporter Associated with Anti	98.86
COG1129		500	MglA ABC-type sugar transport system, ATPase compo	98.85
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	98.85
PRK09700		510	D-allose transporter ATP-binding protein; Provisio	98.85
PRK10762		501	D-ribose transporter ATP binding protein; Provisio	98.85
PRK14259		269	phosphate ABC transporter ATP-binding protein; Pro	98.85
TIGR00972		247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.85
PRK11288		501	araG L-arabinose transporter ATP-binding protein;	98.85
PRK13409		590	putative ATPase RIL; Provisional	98.85
cd03290		218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.85
PRK14247		250	phosphate ABC transporter ATP-binding protein; Pro	98.85
PRK14265		274	phosphate ABC transporter ATP-binding protein; Pro	98.85
TIGR03269		520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.85
PRK15134		529	microcin C ABC transporter ATP-binding protein Yej	98.84
PRK14242		253	phosphate transporter ATP-binding protein; Provisi	98.84
PRK13547		272	hmuV hemin importer ATP-binding subunit; Provision	98.84
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	98.84
cd03251		234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.84
TIGR03269		520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.84
TIGR02770		230	nickel_nikD nickel import ATP-binding protein NikD	98.83
cd03249		238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.83
PRK14273		254	phosphate ABC transporter ATP-binding protein; Pro	98.83
PRK10418		254	nikD nickel transporter ATP-binding protein NikD;	98.83
COG4988		559	CydD ABC-type transport system involved in cytochr	98.83
PRK14258		261	phosphate ABC transporter ATP-binding protein; Pro	98.82
COG1101		263	PhnK ABC-type uncharacterized transport system, AT	98.82
PRK14267		253	phosphate ABC transporter ATP-binding protein; Pro	98.82
PRK14269		246	phosphate ABC transporter ATP-binding protein; Pro	98.82
COG4598		256	HisP ABC-type histidine transport system, ATPase c	98.82
cd03253		236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.81
PRK14268		258	phosphate ABC transporter ATP-binding protein; Pro	98.81
cd03221		144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.81
PRK10938		490	putative molybdenum transport ATP-binding protein	98.81
PRK14262		250	phosphate ABC transporter ATP-binding protein; Pro	98.81
CHL00131		252	ycf16 sulfate ABC transporter protein; Validated	98.8
TIGR02633		500	xylG D-xylose ABC transporter, ATP-binding protein	98.8
PRK10744		260	pstB phosphate transporter ATP-binding protein; Pr	98.8
PRK14245		250	phosphate ABC transporter ATP-binding protein; Pro	98.8
cd03289		275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.79
PRK14239		252	phosphate transporter ATP-binding protein; Provisi	98.79
PRK14251		251	phosphate ABC transporter ATP-binding protein; Pro	98.79
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	98.79
PRK14241		258	phosphate transporter ATP-binding protein; Provisi	98.78
PRK15439		510	autoinducer 2 ABC transporter ATP-binding protein	98.78
PRK13546		264	teichoic acids export protein ATP-binding subunit;	98.77
PRK14240		250	phosphate transporter ATP-binding protein; Provisi	98.77
PRK13549		506	xylose transporter ATP-binding subunit; Provisiona	98.77
TIGR01257		2272	rim_protein retinal-specific rim ABC transporter.	98.77
PRK15134		529	microcin C ABC transporter ATP-binding protein Yej	98.76
PRK14243		264	phosphate transporter ATP-binding protein; Provisi	98.76
TIGR02633		500	xylG D-xylose ABC transporter, ATP-binding protein	98.76
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	98.76
KOG0058		716	consensus Peptide exporter, ABC superfamily [Intra	98.76
PRK14254		285	phosphate ABC transporter ATP-binding protein; Pro	98.76
PRK14275		286	phosphate ABC transporter ATP-binding protein; Pro	98.76
PRK14260		259	phosphate ABC transporter ATP-binding protein; Pro	98.75
COG4172		534	ABC-type uncharacterized transport system, duplica	98.75
cd03244		221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.75
COG4161		242	ArtP ABC-type arginine transport system, ATPase co	98.75
cd03250		204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.75
PRK14248		268	phosphate ABC transporter ATP-binding protein; Pro	98.75
PRK14235		267	phosphate transporter ATP-binding protein; Provisi	98.74
cd03220		224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.74
COG0396		251	sufC Cysteine desulfurase activator ATPase [Posttr	98.74
PRK14249		251	phosphate ABC transporter ATP-binding protein; Pro	98.74
PRK11819		556	putative ABC transporter ATP-binding protein; Revi	98.74
PRK14256		252	phosphate ABC transporter ATP-binding protein; Pro	98.73
PRK14263		261	phosphate ABC transporter ATP-binding protein; Pro	98.73
COG4172		534	ABC-type uncharacterized transport system, duplica	98.73
PRK14255		252	phosphate ABC transporter ATP-binding protein; Pro	98.73
TIGR01257		2272	rim_protein retinal-specific rim ABC transporter.	98.73
PRK14253		249	phosphate ABC transporter ATP-binding protein; Pro	98.72
TIGR01842		544	type_I_sec_PrtD type I secretion system ABC transp	98.72
PRK14237		267	phosphate transporter ATP-binding protein; Provisi	98.71
PRK14272		252	phosphate ABC transporter ATP-binding protein; Pro	98.71
PRK10982		491	galactose/methyl galaxtoside transporter ATP-bindi	98.71
cd00267		157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.7
PRK13409		590	putative ATPase RIL; Provisional	98.7
PF00005		137	ABC_tran: ABC transporter This structure is on hol	98.7
COG4136		213	ABC-type uncharacterized transport system, ATPase	98.7
PRK14257		329	phosphate ABC transporter ATP-binding protein; Pro	98.7
PRK14270		251	phosphate ABC transporter ATP-binding protein; Pro	98.7
PRK11174		588	cysteine/glutathione ABC transporter membrane/ATP-	98.7
PRK15064		530	ABC transporter ATP-binding protein; Provisional	98.7
TIGR03719		552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.69
PRK13545		549	tagH teichoic acids export protein ATP-binding sub	98.69
PRK14236		272	phosphate transporter ATP-binding protein; Provisi	98.69
PRK14244		251	phosphate ABC transporter ATP-binding protein; Pro	98.69
cd03278		197	ABC_SMC_barmotin Barmotin is a tight junction-asso	98.68
PRK14271		276	phosphate ABC transporter ATP-binding protein; Pro	98.68
PRK10535		648	macrolide transporter ATP-binding /permease protei	98.68
PRK11160		574	cysteine/glutathione ABC transporter membrane/ATP-	98.68
COG1132		567	MdlB ABC-type multidrug transport system, ATPase a	98.68
TIGR02868		529	CydC thiol reductant ABC exporter, CydC subunit. T	98.68
PRK14274		259	phosphate ABC transporter ATP-binding protein; Pro	98.67
PRK14264		305	phosphate ABC transporter ATP-binding protein; Pro	98.67
PRK10790		592	putative multidrug transporter membrane\ATP-bindin	98.67
PRK15177		213	Vi polysaccharide export ATP-binding protein VexC;	98.67
PRK14246		257	phosphate ABC transporter ATP-binding protein; Pro	98.67
PRK14238		271	phosphate transporter ATP-binding protein; Provisi	98.67
TIGR03797		686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.66
PLN03211		659	ABC transporter G-25; Provisional	98.66
TIGR02857		529	CydD thiol reductant ABC exporter, CydD subunit. U	98.66
PRK09580		248	sufC cysteine desulfurase ATPase component; Review	98.66
cd03291		282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	98.65
cd03236		255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.65
TIGR02203		571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.65
PRK15064		530	ABC transporter ATP-binding protein; Provisional	98.65
TIGR01193		708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.65
PRK14252		265	phosphate ABC transporter ATP-binding protein; Pro	98.65
KOG0055		1228	consensus Multidrug/pheromone exporter, ABC superf	98.65
PRK14261		253	phosphate ABC transporter ATP-binding protein; Pro	98.65
PRK14266		250	phosphate ABC transporter ATP-binding protein; Pro	98.63
TIGR03375		694	type_I_sec_LssB type I secretion system ATPase, Ls	98.63
TIGR00954		659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	98.63
TIGR01194		555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.63
TIGR00955		617	3a01204 The Eye Pigment Precursor Transporter (EPP	98.63
TIGR01192		585	chvA glucan exporter ATP-binding protein. This mod	98.63
cd03288		257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.62
PRK11176		582	lipid transporter ATP-binding/permease protein; Pr	98.62
COG4178		604	ABC-type uncharacterized transport system, permeas	98.62
TIGR03796		710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.62
PRK13657		588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.62
COG4586		325	ABC-type uncharacterized transport system, ATPase	98.61
TIGR00958		711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.61
PRK10522		547	multidrug transporter membrane component/ATP-bindi	98.61
PRK11819		556	putative ABC transporter ATP-binding protein; Revi	98.59
COG0488		530	Uup ATPase components of ABC transporters with dup	98.59
PRK11147		635	ABC transporter ATPase component; Reviewed	98.59
TIGR03719		552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.59
PRK10636		638	putative ABC transporter ATP-binding protein; Prov	98.59
PRK10789		569	putative multidrug transporter membrane\ATP-bindin	98.58
PRK10938		490	putative molybdenum transport ATP-binding protein	98.58
TIGR00957		1522	MRP_assoc_pro multi drug resistance-associated pro	98.58
cd03270		226	ABC_UvrA_I The excision repair protein UvrA domain	98.56
PLN03130		1622	ABC transporter C family member; Provisional	98.55
PTZ00265		1466	multidrug resistance protein (mdr1); Provisional	98.55
CHL00122		870	secA preprotein translocase subunit SecA; Validate	98.55
TIGR02204		576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.55
PLN03232		1495	ABC transporter C family member; Provisional	98.54
COG4604		252	CeuD ABC-type enterochelin transport system, ATPas	98.53
PTZ00243		1560	ABC transporter; Provisional	98.53
TIGR01271		1490	CFTR_protein cystic fibrosis transmembrane conduct	98.52
KOG0055		1228	consensus Multidrug/pheromone exporter, ABC superf	98.52
KOG0057		591	consensus Mitochondrial Fe/S cluster exporter, ABC	98.51
PRK11147		635	ABC transporter ATPase component; Reviewed	98.51
PLN03140		1470	ABC transporter G family member; Provisional	98.5
COG4618		580	ArpD ABC-type protease/lipase transport system, AT	98.5
TIGR01846		694	type_I_sec_HlyB type I secretion system ABC transp	98.49
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	98.48
COG1134		249	TagH ABC-type polysaccharide/polyol phosphate tran	98.48
KOG1123		776	consensus RNA polymerase II transcription initiati	98.47
TIGR00956		1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.46
PRK10636		638	putative ABC transporter ATP-binding protein; Prov	98.44
COG4167		267	SapF ABC-type antimicrobial peptide transport syst	98.43
cd03240		204	ABC_Rad50 The catalytic domains of Rad50 are simil	98.41
COG4619		223	ABC-type uncharacterized transport system, ATPase	98.4
PLN03073		718	ABC transporter F family; Provisional	98.4
PTZ00265		1466	multidrug resistance protein (mdr1); Provisional	98.4
PLN03140		1470	ABC transporter G family member; Provisional	98.38
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	98.37
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	98.36
COG4107		258	PhnK ABC-type phosphonate transport system, ATPase	98.36
COG4559		259	ABC-type hemin transport system, ATPase component	98.35
KOG0060		659	consensus Long-chain acyl-CoA transporter, ABC sup	98.35
COG0488		530	Uup ATPase components of ABC transporters with dup	98.33
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	98.32
KOG0061		613	consensus Transporter, ABC superfamily (Breast can	98.32
COG4674		249	Uncharacterized ABC-type transport system, ATPase	98.31
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	98.3

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=7.1e-145  Score=1158.93  Aligned_cols=615  Identities=55%  Similarity=0.948  Sum_probs=589.1

Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHH
Q 005605           54 RYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVS  133 (688)
Q Consensus        54 ~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~  133 (688)
                      ...++.+.|..||++..+.+|+..+.++++++|+|+||||||||+||++++.. +..    ++. |+||||||++++++|
T Consensus        39 ~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG-~~~----~g~-I~~TQPRRVAavslA  112 (674)
T KOG0922|consen   39 TNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAG-FAS----SGK-IACTQPRRVAAVSLA  112 (674)
T ss_pred             cccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcc-ccc----CCc-EEeecCchHHHHHHH
Confidence            33456678899999999999999999999999999999999999999999887 543    243 999999999999999


Q ss_pred             HHHHHhhcccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHHHHHHHHHhc
Q 005605          134 RRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKN  213 (688)
Q Consensus       134 ~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll~~l~~i~~~  213 (688)
                      +||+++++..+|+.|||.+||++..+.+|+|+|+|+|+|+|+++.+++|++|++|||||||||++.+|.++++||.+.++
T Consensus       113 ~RVAeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~  192 (674)
T KOG0922|consen  113 KRVAEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKK  192 (674)
T ss_pred             HHHHHHhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEecccccHHHHHchhcCCCeeeeCCcccccceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHH
Q 005605          214 RPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIE  293 (688)
Q Consensus       214 ~~~~~vil~SAT~~~~~~~~~~~~~p~~~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~  293 (688)
                      ++++++|+||||+|+++|++||.++|++.++||.|||+++|.+.+..||+++.+.++.+||.++++|+|||||+|++||+
T Consensus       193 R~~LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe  272 (674)
T KOG0922|consen  193 RPDLKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIE  272 (674)
T ss_pred             CCCceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcc
Q 005605          294 DACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFA  373 (688)
Q Consensus       294 ~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~  373 (688)
                      .+++.|.+....+..+.+. .++|+||.|+.++|.++|.+.+.|       .||||+||||||||||||||.||||+|++
T Consensus       273 ~~~~~l~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g-------~RKvIlsTNIAETSlTI~GI~YVVDsG~v  344 (674)
T KOG0922|consen  273 AACELLRERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPG-------KRKVILSTNIAETSLTIDGIRYVVDSGFV  344 (674)
T ss_pred             HHHHHHHHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCC-------cceEEEEcceeeeeEEecceEEEEcCCce
Confidence            9999999987776666555 789999999999999999999999       99999999999999999999999999999


Q ss_pred             cceeecCCCCcccceeeecchhhHHhhccccCCCCCceEEEccchhhhcccCCCCCCCcccccCcHHHHHHHHHcCCCCC
Q 005605          374 KQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDL  453 (688)
Q Consensus       374 k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~  453 (688)
                      |++.|||..|+++|.++|+|++++.||+|||||++||+|||||++++|+. |++.++|||.|++|+.++|+||++|++|+
T Consensus       345 K~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~-~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~  423 (674)
T KOG0922|consen  345 KQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDK-MPLQTVPEIQRVNLSSAVLQLKALGINDP  423 (674)
T ss_pred             EEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhh-cccCCCCceeeechHHHHHHHHhcCCCCc
Confidence            99999999999999999999999999999999999999999999999966 99999999999999999999999999999


Q ss_pred             ccccCCCCCcHHHHHHHHHHHHHcCCccCCCCcCh-hhhhcccCCCChhhhhhhhhcCCCCChHHHHHHHHHhcCCCCCC
Q 005605          454 VHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTE-MGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFV  532 (688)
Q Consensus       454 ~~f~~~~~P~~~~i~~a~~~L~~lgald~~~~lT~-lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~  532 (688)
                      ..|+|+|||+++++..|++.|+.+||||++|.||. +|+.|+.||++|.++|||+.|..+||++++++|+||||++++|.
T Consensus       424 l~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~  503 (674)
T KOG0922|consen  424 LRFPFIDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFS  503 (674)
T ss_pred             ccCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceec
Confidence            99999999999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             CChHHHHH-HHHHHHHhCCCCCcHHHHHHHHHHHHhcCCChhhHHhhcCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCC
Q 005605          533 RPREAQKA-ADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDF  611 (688)
Q Consensus       533 ~~~~~~~~-~~~~~~~~~~~~sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~qL~~~l~~~~~~~~~~~~  611 (688)
                      .|.+.+.+ ++..+.+|.+.+|||+|+|++|+.|..++...+||.+||||++.|++|.++|+||.+++.+.+++..+++.
T Consensus       504 ~p~~~~~~~a~~~~~kf~~~eGDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~~  583 (674)
T KOG0922|consen  504 RPKDKKAEDADRKRAKFANPEGDHLTLLNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSCGG  583 (674)
T ss_pred             CccchhhhhhhHHHHhhcCcccCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence            99887666 88999999999999999999999999999999999999999999999999999999999999998866543


Q ss_pred             CCcchHHHHHHHHHhccccceeEec-CCCcEEEeecCeEEEECCCCCC-CCCCCEEEEEeeeccccceeeeccccCCCC
Q 005605          612 NSRDYYVNIRKAMLAGYFMQVAHLE-RTGQYLTVKDNQVVHLHPSNCL-DHKPEWVIYNEYVLTSRNFIRTVTDVRGEW  688 (688)
Q Consensus       612 ~~~~~~~~i~~~l~~g~~~niA~~~-~~~~y~~~~~~~~~~ihpsS~l-~~~~~~vvy~e~~~t~k~y~r~vt~i~~~W  688 (688)
                          +.+.|++|||+|||.|+|++. ++| |+++.+|+.|+|||||++ ..+|+||||+|++.|+|.|||+||.|+++|
T Consensus       584 ----d~~~i~k~l~aGff~N~A~~~~~~~-Yrti~~~~~v~IHPSS~l~~~~p~~viy~el~~Ttk~Y~r~Vt~i~~~w  657 (674)
T KOG0922|consen  584 ----DMEKIRKCLCAGFFRNVAERDYQDG-YRTIRGGQPVYIHPSSVLFRRKPEWVIYHELLQTTKEYMRNVTAIDPEW  657 (674)
T ss_pred             ----CHHHHHHHHHHHHHHHHHHhhcCCC-eEEccCCcEEEEechHHhhcCCCCEEEEEEEeecchHhHhheeecCHHH
Confidence                467899999999999999997 556 999999999999999999 456899999999999999999999999999

>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]	Back alignment and domain information

>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO)	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>smart00847 HA2 Helicase associated domain (HA2) Add an annotation	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	Back alignment and domain information

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	Back alignment and domain information

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein	Back alignment and domain information

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit	Back alignment and domain information

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional	Back alignment and domain information

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional	Back alignment and domain information

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	Back alignment and domain information

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein	Back alignment and domain information

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed	Back alignment and domain information

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]	Back alignment and domain information

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)	Back alignment and domain information

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota	Back alignment and domain information

>PRK13537 nodulation ABC transporter NodI; Provisional	Back alignment and domain information

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules	Back alignment and domain information

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup	Back alignment and domain information

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively	Back alignment and domain information

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP	Back alignment and domain information

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional	Back alignment and domain information

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity	Back alignment and domain information

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system	Back alignment and domain information

>TIGR02673 FtsE cell division ATP-binding protein FtsE	Back alignment and domain information

>PRK13536 nodulation factor exporter subunit NodI; Provisional	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit	Back alignment and domain information

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein	Back alignment and domain information

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment	Back alignment and domain information

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport	Back alignment and domain information

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed	Back alignment and domain information

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity	Back alignment and domain information

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import	Back alignment and domain information

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional	Back alignment and domain information

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]	Back alignment and domain information

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake	Back alignment and domain information

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK	Back alignment and domain information

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin	Back alignment and domain information

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain	Back alignment and domain information

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI	Back alignment and domain information

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine	Back alignment and domain information

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit	Back alignment and domain information

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea	Back alignment and domain information

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT	Back alignment and domain information

>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group	Back alignment and domain information

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)	Back alignment and domain information

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively	Back alignment and domain information

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane	Back alignment and domain information

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance	Back alignment and domain information

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota	Back alignment and domain information

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein	Back alignment and domain information

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids	Back alignment and domain information

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional	Back alignment and domain information

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids	Back alignment and domain information

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional	Back alignment and domain information

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor	Back alignment and domain information

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system	Back alignment and domain information

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D	Back alignment and domain information

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK10908 cell division protein FtsE; Provisional	Back alignment and domain information

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]	Back alignment and domain information

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment	Back alignment and domain information

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional	Back alignment and domain information

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)	Back alignment and domain information

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters	Back alignment and domain information

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD	Back alignment and domain information

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed	Back alignment and domain information

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters	Back alignment and domain information

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)	Back alignment and domain information

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis	Back alignment and domain information

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome	Back alignment and domain information

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit	Back alignment and domain information

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13651 cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB	Back alignment and domain information

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors	Back alignment and domain information

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter	Back alignment and domain information

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds	Back alignment and domain information

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA	Back alignment and domain information

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional	Back alignment and domain information

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family	Back alignment and domain information

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE	Back alignment and domain information

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional	Back alignment and domain information

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional	Back alignment and domain information

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional	Back alignment and domain information

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional	Back alignment and domain information

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE	Back alignment and domain information

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion	Back alignment and domain information

>PRK10762 D-ribose transporter ATP binding protein; Provisional	Back alignment and domain information

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	Back alignment and domain information

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export	Back alignment and domain information

>PRK13633 cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component	Back alignment and domain information

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D	Back alignment and domain information

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)	Back alignment and domain information

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional	Back alignment and domain information

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK09700 D-allose transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component	Back alignment and domain information

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed	Back alignment and domain information

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein	Back alignment and domain information

>cd03299 ABC_ModC_like Archeal protein closely related to ModC	Back alignment and domain information

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit	Back alignment and domain information

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake	Back alignment and domain information

>PRK03695 vitamin B12-transporter ATPase; Provisional	Back alignment and domain information

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]	Back alignment and domain information

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional	Back alignment and domain information

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK10261 glutathione transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids	Back alignment and domain information

>PRK13549 xylose transporter ATP-binding subunit; Provisional	Back alignment and domain information

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]	Back alignment and domain information

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit	Back alignment and domain information

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional	Back alignment and domain information

>TIGR01978 sufC FeS assembly ATPase SufC	Back alignment and domain information

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK	Back alignment and domain information

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters	Back alignment and domain information

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea	Back alignment and domain information

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient	Back alignment and domain information

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional	Back alignment and domain information

>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	Back alignment and domain information

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)	Back alignment and domain information

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein	Back alignment and domain information

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E	Back alignment and domain information

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>PRK10261 glutathione transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	Back alignment and domain information

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules	Back alignment and domain information

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>PRK09700 D-allose transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK10762 D-ribose transporter ATP binding protein; Provisional	Back alignment and domain information

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13409 putative ATPase RIL; Provisional	Back alignment and domain information

>cd03290 ABCC_SUR1_N The SUR domain 1	Back alignment and domain information

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2	Back alignment and domain information

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional	Back alignment and domain information

>PRK14242 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins	Back alignment and domain information

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2	Back alignment and domain information

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD	Back alignment and domain information

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1	Back alignment and domain information

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional	Back alignment and domain information

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]	Back alignment and domain information

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria	Back alignment and domain information

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth	Back alignment and domain information

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional	Back alignment and domain information

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>CHL00131 ycf16 sulfate ABC transporter protein; Validated	Back alignment and domain information

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2	Back alignment and domain information

>PRK14239 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK14241 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional	Back alignment and domain information

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional	Back alignment and domain information

>PRK14240 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13549 xylose transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR01257 rim_protein retinal-specific rim ABC transporter	Back alignment and domain information

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional	Back alignment and domain information

>PRK14243 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	Back alignment and domain information

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C	Back alignment and domain information

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C	Back alignment and domain information

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14235 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export	Back alignment and domain information

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed	Back alignment and domain information

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	Back alignment and domain information

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR01257 rim_protein retinal-specific rim ABC transporter	Back alignment and domain information

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family	Back alignment and domain information

>PRK14237 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules	Back alignment and domain information

>PRK13409 putative ATPase RIL; Provisional	Back alignment and domain information

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems	Back alignment and domain information

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]	Back alignment and domain information

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	Back alignment and domain information

>PRK15064 ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family	Back alignment and domain information

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional	Back alignment and domain information

>PRK14236 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function	Back alignment and domain information

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional	Back alignment and domain information

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	Back alignment and domain information

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	Back alignment and domain information

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit	Back alignment and domain information

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional	Back alignment and domain information

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional	Back alignment and domain information

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14238 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein	Back alignment and domain information

>PLN03211 ABC transporter G-25; Provisional	Back alignment and domain information

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit	Back alignment and domain information

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed	Back alignment and domain information

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1	Back alignment and domain information

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor	Back alignment and domain information

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA	Back alignment and domain information

>PRK15064 ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter	Back alignment and domain information

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family	Back alignment and domain information

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei	Back alignment and domain information

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter	Back alignment and domain information

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein	Back alignment and domain information

>TIGR01192 chvA glucan exporter ATP-binding protein	Back alignment and domain information

>cd03288 ABCC_SUR2 The SUR domain 2	Back alignment and domain information

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional	Back alignment and domain information

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	Back alignment and domain information

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein	Back alignment and domain information

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional	Back alignment and domain information

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]	Back alignment and domain information

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein	Back alignment and domain information

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional	Back alignment and domain information

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed	Back alignment and domain information

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	Back alignment and domain information

>PRK11147 ABC transporter ATPase component; Reviewed	Back alignment and domain information

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family	Back alignment and domain information

>PRK10636 putative ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional	Back alignment and domain information

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional	Back alignment and domain information

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)	Back alignment and domain information

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion	Back alignment and domain information

>PLN03130 ABC transporter C family member; Provisional	Back alignment and domain information

>PTZ00265 multidrug resistance protein (mdr1); Provisional	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein	Back alignment and domain information

>PLN03232 ABC transporter C family member; Provisional	Back alignment and domain information

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PTZ00243 ABC transporter; Provisional	Back alignment and domain information

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)	Back alignment and domain information

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK11147 ABC transporter ATPase component; Reviewed	Back alignment and domain information

>PLN03140 ABC transporter G family member; Provisional	Back alignment and domain information

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	Back alignment and domain information

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein	Back alignment and domain information

>PRK10636 putative ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains	Back alignment and domain information

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]	Back alignment and domain information

>PLN03073 ABC transporter F family; Provisional	Back alignment and domain information

>PTZ00265 multidrug resistance protein (mdr1); Provisional	Back alignment and domain information

>PLN03140 ABC transporter G family member; Provisional	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]	Back alignment and domain information

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		688
3kx2_B		767	Crystal Structure Of Prp43p In Complex With Adp Len		0.0
2xau_A		773	Crystal Structure Of The Prp43p Deah-Box Rna Helica		0.0
3i4u_A		270	Crystal Structure Analysis Of A Helicase Associated		2e-53
3llm_A		235	Crystal Structure Analysis Of A Rna Helicase Length		2e-24

>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767

Back alignment and structure

Iteration: 1

Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/658 (61%), Positives = 505/658 (76%), Gaps = 23/658 (3%) Query: 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV 102 IN + G+ ++ +Y +IL+ R+ LPV Q++EFL++ + NQ+++ VGETGSGKTTQIPQFV Sbjct: 71 INPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFV 130 Query: 103 LEGVDIETPDRRRKMMIACTQPXXXXXXXXXXXXXEEMDVTIGEEVGYSIRFEDCSSART 162 L E P +ACTQP EEMDV +GEEVGYSIRFE+ +S +T Sbjct: 131 LFD---EMP-HLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKT 186 Query: 163 VLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 +LKY+TDGMLLREAM D L RY I+LDEAHERTLATD+L GLLK+V+K RPDLK+++M Sbjct: 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIM 246 Query: 223 SATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDI 282 SATL+AEKFQ YF APL+ VPGR +PVE++YT E +RDYL++AIRTV+QIH E +GDI Sbjct: 247 SATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDI 306 Query: 283 LVFLTGEEEIEDACRKITKEITNMGDQV------GPVKVVPLYSTLPPAMQQKIFEXXXX 336 L+FLTGE+EIEDA RKI+ E GDQ+ GP+ V PLY +LPP QQ+IFE Sbjct: 307 LLFLTGEDEIEDAVRKISLE----GDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPE 362 Query: 337 XXXXXXXXXRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKAS 396 RK+V+STNIAETSLTIDGIVYV+DPGF+KQKVYNPR+RVESLLVSPISKAS Sbjct: 363 SHNGRPG--RKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKAS 420 Query: 397 AHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF 456 A QR+GRAGRT+PGKCFRLYTE++F +L Q+YPEILRSNL++TVL LKKLGIDDLVHF Sbjct: 421 AQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHF 480 Query: 457 DFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSN 516 DFMDPPAPET+MRALE LNYL LDD+GNLT +G S+FPLDP ++ ML+ S ++ CS Sbjct: 481 DFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQ 540 Query: 517 EILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDP---- 572 EIL+I AMLSVPN F+RP + +K AD+AK F H DGDH+TLLNVYHA+K + Sbjct: 541 EILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIH 600 Query: 573 SWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQV 632 WC D+++N+R+L +ADN+R QL R+M R+NL+L + D+ S Y+ NIRKA+ +G+FMQV Sbjct: 601 KWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQV 660 Query: 633 AHLERTGQ--YLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDVRGEW 688 A +R+G Y+TVKDNQ V +HPS L H EWVIYNE+VLTS+N+IRTVT VR EW Sbjct: 661 AK-KRSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVRPEW 717

PyMOL of 3kx2

>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773

Back alignment and structure

>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain Length = 270

Back alignment and structure

>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase Length = 235

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		688
2xau_A		773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	0.0
3i4u_A		270	ATP-dependent RNA helicase DHX8; splicing, ATP-bin	1e-140
2v6i_A		431	RNA helicase; membrane, hydrolase, transmembrane,	1e-112
2z83_A		459	Helicase/nucleoside triphosphatase; hydrolase, mem	1e-112
2jlq_A		451	Serine protease subunit NS3; ribonucleoprotein, nu	1e-110
3llm_A		235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	1e-106
2wv9_A		673	Flavivirin protease NS2B regulatory subunit, FLAV	9e-99
2whx_A		618	Serine protease/ntpase/helicase NS3; transcription	4e-98
3o8b_A		666	HCV NS3 protease/helicase; ntpase, RNA, translocat	3e-96
1yks_A		440	Genome polyprotein [contains: flavivirin protease	2e-94
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773	Back alignment and structure

 Score = 1165 bits (3017), Expect = 0.0
 Identities = 415/653 (63%), Positives = 518/653 (79%), Gaps = 13/653 (1%)

Query: 43  INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV 102
           IN + G+ ++ +Y +IL+ R+ LPV  Q++EFL++ + NQ+++ VGETGSGKTTQIPQFV
Sbjct: 71  INPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFV 130

Query: 103 LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSART 162
           L     +         +ACTQPRRVAAMSV++RVAEEMDV +GEEVGYSIRFE+ +S +T
Sbjct: 131 LF----DEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKT 186

Query: 163 VLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVM 222
           +LKY+TDGMLLREAM D  L RY  I+LDEAHERTLATD+L GLLK+V+K RPDLK+++M
Sbjct: 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIM 246

Query: 223 SATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDI 282
           SATL+AEKFQ YF  APL+ VPGR +PVE++YT E +RDYL++AIRTV+QIH  E +GDI
Sbjct: 247 SATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDI 306

Query: 283 LVFLTGEEEIEDACRKITKEITNMGDQ--VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKE 340
           L+FLTGE+EIEDA RKI+ E   +  +   GP+ V PLY +LPP  QQ+IFEPAP     
Sbjct: 307 LLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPES--H 364

Query: 341 GGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQR 400
            G PGRK+V+STNIAETSLTIDGIVYV+DPGF+KQKVYNPR+RVESLLVSPISKASA QR
Sbjct: 365 NGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQR 424

Query: 401 SGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMD 460
           +GRAGRT+PGKCFRLYTE++F  +L  Q+YPEILRSNL++TVL LKKLGIDDLVHFDFMD
Sbjct: 425 AGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMD 484

Query: 461 PPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILS 520
           PPAPET+MRALE LNYL  LDD+GNLT +G   S+FPLDP ++ ML+ S ++ CS EIL+
Sbjct: 485 PPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILT 544

Query: 521 ISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNED----PSWCY 576
           I AMLSVPN F+RP + +K AD+AK  F H DGDH+TLLNVYHA+K +         WC 
Sbjct: 545 IVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCR 604

Query: 577 DNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAHLE 636
           D+++N+R+L +ADN+R QL R+M R+NL+L + D+ S  Y+ NIRKA+ +G+FMQVA   
Sbjct: 605 DHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKR 664

Query: 637 RTGQ-YLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDVRGEW 688
              + Y+TVKDNQ V +HPS  L H  EWVIYNE+VLTS+N+IRTVT VR EW
Sbjct: 665 SGAKGYITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVRPEW 717

PyMOL of 2xau

>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270	Back alignment and structure

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431	Back alignment and structure

>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459	Back alignment and structure

>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451	Back alignment and structure

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235	Back alignment and structure

>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673	Back alignment and structure

>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618	Back alignment and structure

>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666	Back alignment and structure

>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		688
d1yksa2		299	c.37.1.14 (A:325-623) YFV helicase domain {Yellow	6e-62
d2bmfa2		305	c.37.1.14 (A:178-482) Dengue virus helicase {Dengu	5e-49
d1a1va1		136	c.37.1.14 (A:190-325) HCV helicase domain {Human h	2e-29
d1yksa1		140	c.37.1.14 (A:185-324) YFV helicase domain {Yellow	3e-15
d1gkub1		237	c.37.1.16 (B:1-250) Helicase-like "domain" of reve	4e-05
d1sgwa_		200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	5e-04
d3adka_		194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	0.001
d2pmka1		241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	0.002

>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

 Score =  206 bits (526), Expect = 6e-62
 Identities = 47/350 (13%), Positives = 85/350 (24%), Gaps = 63/350 (18%)

Query: 243 VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKE 302
            P     +E   T  P   +            +         FL            + K 
Sbjct: 6   FPHSNGEIEDVQTDIPSEPWNTGHDW------ILADKRPTAWFLPSIRAANVMAASLRKA 59

Query: 303 ITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID 362
                       VV L           I +                +++T+IAE    + 
Sbjct: 60  GK---------SVVVLNRKTFEREYPTIKQK-----------KPDFILATDIAEMGANLC 99

Query: 363 GIVYVIDPGFA-KQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF 421
            +  V+D   A K  + +   +V       IS +SA QR GR GR  P +    Y    +
Sbjct: 100 -VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRN-PNRDGDSYY---Y 154

Query: 422 NNDLQPQTYPEILRSN----LANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYL 477
           +          +        L N  +    +     V          E  +R  +   + 
Sbjct: 155 SEPTSENNAHHVCWLEASMLLDNMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFR 214

Query: 478 GALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREA 537
             + +      +  ++++  L     K                         CF  P E 
Sbjct: 215 ELVRNCDLPVWLSWQVAKAGLKTNDRKW------------------------CFEGPEEH 250

Query: 538 QKAADEA-KARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALK 586
           +   D     +     G    L   +    +           F+     +
Sbjct: 251 EILNDSGETVKCRAPGGAKKPLRPRWC--DERVSSDQSALSEFIKFAEGR 298

PyMOL of d1yksa2

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305	Back information, alignment and structure

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136	Back information, alignment and structure

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140	Back information, alignment and structure

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237	Back information, alignment and structure

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200	Back information, alignment and structure

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194	Back information, alignment and structure

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		688
d2bmfa2		305	Dengue virus helicase {Dengue virus type 2 [TaxId:	100.0
d1yksa2		299	YFV helicase domain {Yellow fever virus [TaxId: 11	99.98
d2j0sa1		222	Probable ATP-dependent RNA helicase DDX48 {Human (	99.97
d2g9na1		218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	99.97
d1qdea_		212	Initiation factor 4a {Baker's yeast (Saccharomyces	99.96
d1veca_		206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	99.96
d1t6na_		207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	99.96
d1s2ma1		206	Putative ATP-dependent RNA helicase DHH1 {Baker's	99.95
d1wrba1		238	putative ATP-dependent RNA helicase VlgB {Flatworm	99.95
d1hv8a1		208	Putative DEAD box RNA helicase {Archaeon Methanoco	99.94
d1q0ua_		209	Probable DEAD box RNA helicase YqfR {Bacillus stea	99.93
d1fuka_		162	Initiation factor 4a {Baker's yeast (Saccharomyces	99.93
d2j0sa2		168	Probable ATP-dependent RNA helicase DDX48 {Human (	99.93
d2rb4a1		168	ATP-dependent RNA helicase DDX25 {Human (Homo sapi	99.93
d1s2ma2		171	Putative ATP-dependent RNA helicase DHH1 {Baker's	99.93
d1oywa3		200	RecQ helicase domain {Escherichia coli [TaxId: 562	99.92
d1hv8a2		155	Putative DEAD box RNA helicase {Archaeon Methanoco	99.91
d1t5ia_		168	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	99.91
d1t5la2		181	Nucleotide excision repair enzyme UvrB {Bacillus c	99.89
d1c4oa2		174	Nucleotide excision repair enzyme UvrB {Thermus th	99.88
d1wp9a2		286	putative ATP-dependent RNA helicase PF2015 {Pyroco	99.85
d1jr6a_		138	HCV helicase domain {Human hepatitis C virus (HCV)	99.83
d2p6ra3		202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	99.82
d1a1va2		299	HCV helicase domain {Human hepatitis C virus (HCV)	99.8
d2p6ra4		201	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	99.76
d1gkub1		237	Helicase-like "domain" of reverse gyrase {Archaeon	99.75
d1oywa2		206	RecQ helicase domain {Escherichia coli [TaxId: 562	99.75
d1gm5a4		206	RecG helicase domain {Thermotoga maritima [TaxId:	99.66
d1gkub2		248	Helicase-like "domain" of reverse gyrase {Archaeon	99.62
d2eyqa5		211	Transcription-repair coupling factor, TRCF {Escher	99.6
d1wp9a1		200	putative ATP-dependent RNA helicase PF2015 {Pyroco	99.58
d2fwra1		200	DNA repair protein RAD25 {Archaeoglobus fulgidus [	99.56
d1a1va1		136	HCV helicase domain {Human hepatitis C virus (HCV)	99.56
d1yksa1		140	YFV helicase domain {Yellow fever virus [TaxId: 11	99.49
d1z3ix1		346	Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI	99.17
d2fz4a1		206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	99.16
d1v43a3		239	Hypothetical protein PH0022, N-terminal domain {Py	99.07
d1l2ta_		230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.06
d3d31a2		229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.05
d1g2912		240	Maltose transport protein MalK, N-terminal domain	99.03
d1tf5a4		175	Translocation ATPase SecA, nucleotide-binding doma	99.02
d1oxxk2		242	Glucose transport protein GlcV, N-terminal domain	99.02
d2awna2		232	Maltose transport protein MalK, N-terminal domain	99.02
d1gm5a3		264	RecG helicase domain {Thermotoga maritima [TaxId:	99.02
d1rifa_		282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	99.01
d1z5za1		244	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	99.0
d3dhwc1		240	Methionine import ATP-binding protein MetN {Escher	98.99
d2eyqa3		233	Transcription-repair coupling factor, TRCF {Escher	98.95
d1vpla_		238	Putative ABC transporter TM0544 {Thermotoga mariti	98.91
d2onka1		240	Molybdate/tungstate import ATP-binding protein Wtp	98.91
d1g6ha_		254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.9
d1ji0a_		240	Branched chain aminoacid ABC transporter {Thermoto	98.87
d1b0ua_		258	ATP-binding subunit of the histidine permease {Sal	98.81
d2pmka1		241	Haemolysin B ATP-binding protein {Escherichia coli	98.71
d2hyda1		255	Putative multidrug export ATP-binding/permease pro	98.68
d1jj7a_		251	Peptide transporter Tap1, C-terminal ABC domain {H	98.67
d1mv5a_		242	Multidrug resistance ABC transporter LmrA, C-termi	98.66
d1sgwa_		200	Putative ABC transporter PF0895 {Pyrococcus furios	98.66
d3b60a1		253	Multidrug resistance ABC transporter MsbA, C-termi	98.6
d1l7vc_		231	ABC transporter involved in vitamin B12 uptake, Bt	98.55
d1r0wa_		281	Cystic fibrosis transmembrane conductance regulato	98.51
d1w36d1		359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	98.44
d1okkd2		207	GTPase domain of the signal recognition particle r	98.28
d1nkta4		219	Translocation ATPase SecA, nucleotide-binding doma	98.27
d2qy9a2		211	GTPase domain of the signal recognition particle r	98.12
d1vmaa2		213	GTPase domain of the signal recognition particle r	98.07
d1ls1a2		207	GTPase domain of the signal sequence recognition p	98.0
d1ye8a1		178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.75
d1j8yf2		211	GTPase domain of the signal sequence recognition p	97.69
d1z3ix2		298	Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI	97.45
d1z63a1		230	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	97.41
d1nkta3		288	Translocation ATPase SecA, nucleotide-binding doma	97.06
d1a5ta2		207	delta prime subunit of DNA polymerase III, N-domai	96.89
d1tf5a3		273	Translocation ATPase SecA, nucleotide-binding doma	96.85
d1njfa_		239	delta prime subunit of DNA polymerase III, N-domai	96.81
d1sxjc2		227	Replication factor C3 {Baker's yeast (Saccharomyce	96.79
d1sxje2		252	Replication factor C5 {Baker's yeast (Saccharomyce	96.49
d1g6oa_		323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.15
d2eyqa3		233	Transcription-repair coupling factor, TRCF {Escher	96.07
d1ixza_		247	AAA domain of cell division protein FtsH {Thermus	96.06
d1tf7a2		242	Circadian clock protein KaiC {Synechococcus sp. st	96.02
d1d2na_		246	Hexamerization domain of N-ethylmalemide-sensitive	95.92
d2i3ba1		189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	95.79
d1sxjb2		224	Replication factor C4 {Baker's yeast (Saccharomyce	95.76
d1iqpa2		231	Replication factor C {Archaeon Pyrococcus furiosus	95.53
d1p9ra_		401	Extracellular secretion NTPase EpsE {Vibrio choler	95.41
d1e32a2		258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.26
d1fnna2		276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.24
d1uaaa1		306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.22
d1cr2a_		277	Gene 4 protein (g4p, DNA primase), helicase domain	95.06
d1tf7a1		242	Circadian clock protein KaiC {Synechococcus sp. st	95.03
d1gm5a3		264	RecG helicase domain {Thermotoga maritima [TaxId:	95.03
d1pjra1		318	DEXX box DNA helicase {Bacillus stearothermophilus	94.94
g1qhh.1		623	DEXX box DNA helicase {Bacillus stearothermophilus	94.92
d2gnoa2		198	gamma subunit of DNA polymerase III, N-domain {The	94.41
d1nlfa_		274	Hexameric replicative helicase repA {Escherichia c	94.14
d1r6bx2		268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.98
d1szpa2		251	DNA repair protein Rad51, catalytic domain {Baker'	93.92
d1w7ja2		730	Myosin S1, motor domain {Chicken (Gallus gallus),	93.78
d3adka_		194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	93.7
d1pzna2		254	DNA repair protein Rad51, catalytic domain {Archae	93.55
d1zp6a1		176	Hypothetical protein Atu3015 {Agrobacterium tumefa	93.54
d1lv7a_		256	AAA domain of cell division protein FtsH {Escheric	93.4
d1znwa1		182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	93.23
d1khta_		190	Adenylate kinase {Archaeon Methanococcus voltae [T	93.09
d1l8qa2		213	Chromosomal replication initiation factor DnaA {Aq	93.07
d1br2a2		710	Myosin S1, motor domain {Chicken (Gallus gallus),	92.89
d1g41a_		443	HslU {Haemophilus influenzae [TaxId: 727]}	92.81
d1s96a_		205	Guanylate kinase {Escherichia coli [TaxId: 562]}	92.78
d2b8ta1		139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	92.72
d1n0wa_		242	DNA repair protein Rad51, catalytic domain {Human	92.66
d1ly1a_		152	Polynucleotide kinase, kinase domain {Bacteriophag	92.5
d1d0xa2		712	Myosin S1, motor domain {Dictyostelium discoideum	92.41
d1knqa_		171	Gluconate kinase {Escherichia coli [TaxId: 562]}	92.38
d1v5wa_		258	Meiotic recombination protein DMC1/LIM15 homolog {	92.14
d1qhxa_		178	Chloramphenicol phosphotransferase {Streptomyces v	92.07
d1lkxa_		684	Myosin S1, motor domain {Dictyostelium discoideum,	92.03
d2fnaa2		283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	91.9
d1np6a_		170	Molybdopterin-guanine dinucleotide biosynthesis pr	91.7
d1ofha_		309	HslU {Haemophilus influenzae [TaxId: 727]}	91.69
d1lw7a2		192	Transcriptional regulator NadR, ribosylnicotinamid	91.56
d2mysa2		794	Myosin S1, motor domain {Chicken (Gallus gallus),	91.5
d1sxjd2		237	Replication factor C2 {Baker's yeast (Saccharomyce	91.41
d1y63a_		174	Probable kinase LmjF30.1890 {Leishmania major [Tax	91.33
d1r6bx3		315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	91.14
d2bdta1		176	Hypothetical protein BH3686 {Bacillus halodurans [	91.0
d1kk8a2		789	Myosin S1, motor domain {Bay scallop (Aequipecten	90.88
d1ukza_		196	Uridylate kinase {Baker's yeast (Saccharomyces cer	90.76
d1kaga_		169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	90.73
d1qf9a_		194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	90.62
d1m8pa3		183	ATP sulfurylase C-terminal domain {Fungus (Penicil	90.57
d1ak2a1		190	Adenylate kinase {Cow (Bos taurus), mitochondrial	90.56
d1zaka1		189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	90.21
d1xjca_		165	Molybdopterin-guanine dinucleotide biosynthesis pr	90.15
d1rkba_		173	Adenylate kinase {Human (Homo sapiens), isoenzyme	90.08
d1teva_		194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	90.02
d1rz3a_		198	Hypothetical protein rbstp0775 {Bacillus stearothe	89.96
d1e4va1		179	Adenylate kinase {Escherichia coli [TaxId: 562]}	89.71
d1xx6a1		141	Thymidine kinase, TK1, N-terminal domain {Clostrid	89.66
d1nksa_		194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	89.63
d1yj5a2		172	5' polynucleotide kinase-3' phosphatase, C-termina	89.62
d4tmka_		210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	89.5
d1gvnb_		273	Plasmid maintenance system epsilon/zeta, toxin zet	89.5
d1zina1		182	Adenylate kinase {Bacillus stearothermophilus [Tax	89.4
d1yrba1		244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	89.31
g1f2t.1		292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.22
g1xew.1		329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	89.2
d2cdna1		181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	89.16
d1s3ga1		182	Adenylate kinase {Bacillus globisporus [TaxId: 145	89.14
d2i1qa2		258	DNA repair protein Rad51, catalytic domain {Archae	89.13
d1kgda_		178	Guanylate kinase-like domain of Cask {Human (Homo	89.08
d1e9ra_		433	Bacterial conjugative coupling protein TrwB {Esche	88.9
d1gkya_		186	Guanylate kinase {Baker's yeast (Saccharomyces cer	88.78
d1ckea_		225	CMP kinase {Escherichia coli [TaxId: 562]}	88.67
d2ak3a1		189	Adenylate kinase {Cow (Bos taurus), mitochondrial	88.48
d1in4a2		238	Holliday junction helicase RuvB {Thermotoga mariti	88.45
d1uj2a_		213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	88.39
d1akya1		180	Adenylate kinase {Baker's yeast (Saccharomyces cer	88.15
d1sxja2		253	Replication factor C1 {Baker's yeast (Saccharomyce	88.15
d1nn5a_		209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	87.98
d1u0la2		225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	87.76
d1lvga_		190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	87.72
d1x6va3		195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	87.66
d1um8a_		364	ClpX {Helicobacter pylori [TaxId: 210]}	87.61
d1qvra3		315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	87.57
d1viaa_		161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	87.36
d1g8pa_		333	ATPase subunit of magnesium chelatase, BchI {Rhodo	87.18
d1xbta1		133	Thymidine kinase, TK1, N-terminal domain {Human (H	87.07
d1w5sa2		287	CDC6-like protein APE0152, N-terminal domain {Aero	87.01
d1ixsb2		239	Holliday junction helicase RuvB {Thermus thermophi	86.83
d1tmka_		214	Thymidylate kinase {Baker's yeast (Saccharomyces c	86.67
d1e69a_		308	Smc head domain {Thermotoga maritima [TaxId: 2336]	86.19
d1e6ca_		170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	85.92
d1q3ta_		223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	85.85
d1p5zb_		241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	84.63
d1bifa1		213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	84.41
d1r7ra3		265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	84.09
d2vp4a1		197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	83.67
d1nija1		222	Hypothetical protein YjiA, N-terminal domain {Esch	83.38
d1m7ga_		208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	83.04
d2p6ra1		85	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	82.64
d1odfa_		286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	82.48
d2fh5b1		207	Signal recognition particle receptor beta-subunit	82.03
d2p67a1		327	LAO/AO transport system kinase ArgK {Escherichia c	81.94
d1tq4a_		400	Interferon-inducible GTPase {Mouse (Mus musculus)	81.91
d2iyva1		165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	81.82
d1h65a_		257	Chloroplast protein translocon GTPase Toc34 {Garde	81.82
d1wb9a2		234	DNA repair protein MutS, the C-terminal domain {Es	81.52
d1a7ja_		288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	81.51
d1v8ka_		362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	81.01
d1htwa_		158	Hypothetical protein HI0065 {Haemophilus influenza	80.87

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=100.00  E-value=8.6e-40  Score=256.22  Aligned_cols=297  Identities=20%  Similarity=0.229  Sum_probs=202.9

Q ss_pred             HHHCCCEEEEEECCCCCHHCCHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHCCHHHHHHHHHCCCCCCEECEEEEECC
Q ss_conf             97519999999389887103052777539667880113745999707731110329999997602222341000242124
Q 005605           77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED  156 (688)
Q Consensus        77 ~i~~g~~vii~g~TGsGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~  156 (688)
                      ++.+|+++++.|+||||||+++..+++... ..  .+.+.+   +..|++..+.++++++.....    .....  ..+.
T Consensus         5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~-~~--~~~~~l---vi~Ptr~La~q~~~~l~~~~~----~~~~~--~~~~   72 (305)
T d2bmfa2           5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREA-IK--RGLRTL---ILAPTRVVAAEMEEALRGLPI----RYQTP--AIRA   72 (305)
T ss_dssp             SSSTTCEEEECCCTTSSTTTTHHHHHHHHH-HH--HTCCEE---EEESSHHHHHHHHHHTTTSCC----BCCC-------
T ss_pred             HHHCCCCEEEEECCCCCHHHHHHHHHHHHH-HH--CCCEEE---EECCHHHHHHHHHHHHHCCCC----CEEEE--EEEE
T ss_conf             864699499997999978799999999998-72--699899---982389999999999854875----21113--7850


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCHHC
Q ss_conf             55536543314979999999114223588078640557581227899999999985199948999436530899980535
Q 005605          157 CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFY  236 (688)
Q Consensus       157 ~~~~~~~i~~~T~g~ll~~l~~~~~l~~~~~iIlDEaher~~~~d~ll~~l~~l~~~~~~~~~il~SAT~~~~~~~~~~~  236 (688)
                      .....+.+.++|++.+..+......+.+++++|+||+|....+...+..+++.+... ++.+++++|||.+.........
T Consensus        73 ~~~~~~~i~~~t~~~l~~~~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~~~-~~~~~v~~SAT~~~~~~~~~~~  151 (305)
T d2bmfa2          73 EHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEM-GEAAGIFMTATPPGSRDPFPQS  151 (305)
T ss_dssp             ---CCCSEEEEEHHHHHHHHTSSSCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHH-TSCEEEEECSSCTTCCCSSCCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCEEEECCC
T ss_conf             125765301377489999984585315400898530111252057888999984166-5313899415787643340234


Q ss_pred             CCCEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             99925407865553100027980128999999999997429999878843869999999999998775229999994999
Q 005605          237 GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVV  316 (688)
Q Consensus       237 ~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~  316 (688)
                      ..|+....          ...+...... ..     ......++++|||++++++++.+++.|...         ++.+.
T Consensus       152 ~~~~~~~~----------~~~~~~~~~~-~~-----~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~  206 (305)
T d2bmfa2         152 NAPIMDEE----------REIPERSWNS-GH-----EWVTDFKGKTVWFVPSIKAGNDIAACLRKN---------GKKVI  206 (305)
T ss_dssp             SSCEEEEE----------CCCCCSCCSS-CC-----HHHHSSCSCEEEECSCHHHHHHHHHHHHHH---------TCCCE
T ss_pred             CCCCEEEE----------EECCHHHHHH-HH-----HHHHHHCCCEEEEECCHHHHHHHHHHHHHC---------CCCEE
T ss_conf             78612799----------8615888999-99-----999960799899963099999999999867---------99899


Q ss_pred             EECCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCE--EECCCCCCCCCEEEECCH
Q ss_conf             936999988760002878888888999942899944853347666990899849964313--224778830000100336
Q 005605          317 PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQK--VYNPRVRVESLLVSPISK  394 (688)
Q Consensus       317 ~lhs~~~~~~r~~~~~~~~~g~~~~~~~~~~viiaT~iae~gidip~v~~VId~g~~k~~--~~d~~~~~~~l~~~p~s~  394 (688)
                      .+||++.+..+.    .++++       .+++++||+++++|+|+ ++++|||+|.....  .||+..+...+...|+|.
T Consensus       207 ~l~~~~~~~~~~----~~~~~-------~~~~lvaT~~~~~G~~~-~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~  274 (305)
T d2bmfa2         207 QLSRKTFDSEYI----KTRTN-------DWDFVVTTDISEMGANF-KAERVIDPRRCMKPVILTDGEERVILAGPMPVTH  274 (305)
T ss_dssp             ECCTTCHHHHGG----GGGTS-------CCSEEEECGGGGTTCCC-CCSEEEECCEEEEEEEECSSSCEEEEEEEEECCH
T ss_pred             EECCCCHHHHHH----HHHCC-------CHHHHHHHHHHHHCCCC-CCCEEEECCCCEEEEEECCCCCCEEEECCCCCCH
T ss_conf             957838477775----43100-------01135556788725788-8408997587414657338987638804456998


Q ss_pred             HHHHHHCCCCCCC-CCCEEEECCCHHHHCC
Q ss_conf             5587212566999-9945999026231200
Q 005605          395 ASAHQRSGRAGRT-QPGKCFRLYTEKSFNN  423 (688)
Q Consensus       395 ~~~~qR~GRaGR~-~~G~~~~l~~~~~~~~  423 (688)
                      ++|+||+||+||. +.|....+|..+..++
T Consensus       275 ~~~~Qr~GR~GR~~~~~~~~~~~~~~~~~~  304 (305)
T d2bmfa2         275 SSAAQRRGRVGRNPKNENDQYIYMGEPLEN  304 (305)
T ss_dssp             HHHHHHHTTSSCSSSCCCEEEEECSCCCCC
T ss_pred             HHHHHHHCCCCCCCCCCEEEEEECCCCCCC
T ss_conf             898324118682899926999989988888

PyMOL of d2bmfa2

>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}	Back information, alignment and structure

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}	Back information, alignment and structure

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}	Back information, alignment and structure

>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}	Back information, alignment and structure

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}	Back information, alignment and structure

>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}	Back information, alignment and structure

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}	Back information, alignment and structure

>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}	Back information, alignment and structure

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}	Back information, alignment and structure

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}	Back information, alignment and structure

>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}	Back information, alignment and structure

>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}	Back information, alignment and structure

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}	Back information, alignment and structure

>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}	Back information, alignment and structure

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}	Back information, alignment and structure

>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}	Back information, alignment and structure

>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}	Back information, alignment and structure

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}	Back information, alignment and structure

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}	Back information, alignment and structure

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}	Back information, alignment and structure

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}	Back information, alignment and structure

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}	Back information, alignment and structure

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}	Back information, alignment and structure

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}	Back information, alignment and structure

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}	Back information, alignment and structure

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}	Back information, alignment and structure

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}	Back information, alignment and structure

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}	Back information, alignment and structure

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}	Back information, alignment and structure

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}	Back information, alignment and structure

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}	Back information, alignment and structure

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}	Back information, alignment and structure

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}	Back information, alignment and structure

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}	Back information, alignment and structure

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}	Back information, alignment and structure

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}	Back information, alignment and structure

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}	Back information, alignment and structure

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}	Back information, alignment and structure

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}	Back information, alignment and structure

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}	Back information, alignment and structure

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}	Back information, alignment and structure

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}	Back information, alignment and structure

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}	Back information, alignment and structure

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}	Back information, alignment and structure

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}	Back information, alignment and structure

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}	Back information, alignment and structure

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}	Back information, alignment and structure

>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}	Back information, alignment and structure

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}	Back information, alignment and structure

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure