Citrus Sinensis ID: 005614
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 688 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FGW9 | 1061 | Transcription factor GTE1 | yes | no | 0.867 | 0.562 | 0.520 | 1e-148 | |
| Q9LK27 | 813 | Transcription factor GTE8 | no | no | 0.867 | 0.734 | 0.460 | 1e-122 | |
| Q93YS6 | 688 | Transcription factor GTE9 | no | no | 0.815 | 0.815 | 0.478 | 1e-120 | |
| Q93ZB7 | 620 | Transcription factor GTE1 | no | no | 0.578 | 0.641 | 0.433 | 1e-85 | |
| Q9S7T1 | 461 | Transcription factor GTE3 | no | no | 0.415 | 0.620 | 0.320 | 7e-40 | |
| Q9LNC4 | 766 | Transcription factor GTE4 | no | no | 0.319 | 0.287 | 0.363 | 6e-38 | |
| Q8H1D7 | 487 | Transcription factor GTE5 | no | no | 0.257 | 0.363 | 0.367 | 1e-30 | |
| Q9LS28 | 494 | Transcription factor GTE1 | no | no | 0.142 | 0.198 | 0.558 | 2e-29 | |
| Q7Y214 | 590 | Transcription factor GTE7 | no | no | 0.293 | 0.342 | 0.340 | 5e-28 | |
| Q84XV2 | 386 | Transcription factor GTE1 | no | no | 0.348 | 0.621 | 0.329 | 4e-26 |
| >sp|Q9FGW9|GTE10_ARATH Transcription factor GTE10 OS=Arabidopsis thaliana GN=GTE10 PE=1 SV=2 | Back alignment and function desciption |
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Score = 526 bits (1356), Expect = e-148, Method: Compositional matrix adjust.
Identities = 332/638 (52%), Positives = 429/638 (67%), Gaps = 41/638 (6%)
Query: 24 MGKSRKYSKGHSSGFVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNI 83
MGK+RK+S+G SGFVPDY AVE + F S R++ SE S KR+ LN
Sbjct: 1 MGKARKHSRGRPSGFVPDYMQAVEP----DEFVYSERMN-----SEASPPLKRRRFGLN- 50
Query: 84 DGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLEQVRVLQKKVASLSSN-VVLSPSSDI 142
DN GV +VL+LSKMS++ER++L KLK +L+QVR L KK+AS SS+ V+LSP +D
Sbjct: 51 --GDNNGVSKEVLSLSKMSRSERKNLVHKLKMELQQVRDLSKKIASFSSDTVLLSPYND- 107
Query: 143 RSCNDGQKRPLLESVGGPSVVLAPKGKKRAPNGRNGPQTKKGNSGRLEPKKPAGAASSSN 202
SC+DG +RP E+ + + +GKKR P + + KKG P + S +
Sbjct: 108 HSCSDGPRRPPPENF---ATFVGSQGKKRPPVRSDKQRNKKG------PSRLNVPTSYTV 158
Query: 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYS 262
A +MK+CE LL RL SH+ GW F TPVD + LNIPDYF VIKHPMDLGTI+ ++ G+YS
Sbjct: 159 ASVMKECETLLNRLWSHKSGWPFRTPVDPVMLNIPDYFNVIKHPMDLGTIRSRLCKGEYS 218
Query: 263 DPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKLPVTVDMTAVPSR 322
PL FAADVRLTFSN++ YNPP N H MA + KYFE WK+IEKK+P++ +P
Sbjct: 219 SPLDFAADVRLTFSNSIAYNPPGNQFHTMAQGISKYFESGWKSIEKKIPMS-KPPVIPLT 277
Query: 323 ADDMIETETRMGMPPMKKKKVSPKETKIKAEPVRRVMTNEEKRILSTELEALLEELPESI 382
+ +E+E + PM+KK+ + + K++ EP + VMT+ EK+ L +L AL E+ P+ I
Sbjct: 278 SSASLESEIPFEVAPMRKKEAAMNDNKLRVEPAKLVMTDGEKKKLGQDLMALEEDFPQKI 337
Query: 383 IDFLKEHSA--GETGEDELEIDIDALSDDTLFALRKLLDDYLLEKQQKQANPGPCEMEVL 440
D L+E S G++GE E+EIDI+ALSD+ LF +RKLLDDYL EK++ PCEME++
Sbjct: 338 ADLLREQSGSDGQSGEGEIEIDIEALSDEILFMVRKLLDDYLREKKKSMEKSEPCEMEIV 397
Query: 441 NESGLSNSSMQLCKGNDLVDEDVDIVGGNDPPVTDIPPVAIEKDAANRNSKCSSSSSSSS 500
++SG SNS +Q KG+ +DEDVDIVGGNDP V+ PP+ IEKDAA RN++ SSSSSSSS
Sbjct: 398 HDSGFSNSPLQPSKGDLQIDEDVDIVGGNDPSVSSHPPLKIEKDAACRNNESSSSSSSSS 457
Query: 501 ESGSSSSDSDSGSSSGSEPDAAKASVPANAVEENLVSGANLDEKKSEGVPD--IGNSSVN 558
ESGSSSSDSDS SSSGSE D+ KAS P + EE G +D+K+ + + + N S+N
Sbjct: 458 ESGSSSSDSDSCSSSGSETDSIKASKPT-SREEKKQPGVGIDKKEDDSNSEKIVVNDSLN 516
Query: 559 SLDQVELNSQGK-----PVAIVADGHHEGESAPSERQV---SPDKLYRAALLRNRFADTI 610
LDQ+E K V +V D E+AP ERQ+ SPDK YRAA L+NRFADTI
Sbjct: 517 ELDQLEHTVGEKSTTMDAVVLVPD----EETAPPERQISPDSPDKRYRAAFLKNRFADTI 572
Query: 611 LKAREKALEKGEKRDPEKLRIEREELERRHREEKARLQ 648
+KAREKA KGEK DPEKLRIEREE E+R REEK RLQ
Sbjct: 573 MKAREKAFTKGEKGDPEKLRIEREEFEKRLREEKERLQ 610
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Acts as a negative regulator in plant response to changes in environmental conditions through the control of ABA-regulated gene expression. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LK27|GTE8_ARATH Transcription factor GTE8 OS=Arabidopsis thaliana GN=GTE8 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q93YS6|GTE9_ARATH Transcription factor GTE9 OS=Arabidopsis thaliana GN=GTE9 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q93ZB7|GTE11_ARATH Transcription factor GTE11 OS=Arabidopsis thaliana GN=GTE11 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9S7T1|GTE3_ARATH Transcription factor GTE3, chloroplastic OS=Arabidopsis thaliana GN=GTE3 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9LNC4|GTE4_ARATH Transcription factor GTE4 OS=Arabidopsis thaliana GN=GTE4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8H1D7|GTE5_ARATH Transcription factor GTE5, chloroplastic OS=Arabidopsis thaliana GN=GTE5 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9LS28|GTE12_ARATH Transcription factor GTE12 OS=Arabidopsis thaliana GN=GTE12 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q7Y214|GTE7_ARATH Transcription factor GTE7 OS=Arabidopsis thaliana GN=GTE7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q84XV2|GTE1_ARATH Transcription factor GTE1 OS=Arabidopsis thaliana GN=GTE1 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 688 | ||||||
| 255540327 | 759 | bromodomain-containing protein, putative | 0.979 | 0.888 | 0.702 | 0.0 | |
| 224136059 | 709 | global transcription factor group [Popul | 0.889 | 0.863 | 0.690 | 0.0 | |
| 359491054 | 770 | PREDICTED: LOW QUALITY PROTEIN: transcri | 0.982 | 0.877 | 0.686 | 0.0 | |
| 356516581 | 786 | PREDICTED: transcription factor GTE10-li | 0.992 | 0.868 | 0.662 | 0.0 | |
| 356508786 | 781 | PREDICTED: transcription factor GTE10-li | 0.989 | 0.871 | 0.665 | 0.0 | |
| 356513665 | 739 | PREDICTED: transcription factor GTE8-lik | 0.931 | 0.867 | 0.607 | 0.0 | |
| 297734375 | 700 | unnamed protein product [Vitis vinifera] | 0.888 | 0.872 | 0.661 | 0.0 | |
| 449440580 | 781 | PREDICTED: transcription factor GTE10-li | 0.991 | 0.873 | 0.647 | 0.0 | |
| 296090258 | 714 | unnamed protein product [Vitis vinifera] | 0.889 | 0.857 | 0.591 | 1e-177 | |
| 359488601 | 739 | PREDICTED: transcription factor GTE8-lik | 0.925 | 0.861 | 0.596 | 1e-174 |
| >gi|255540327|ref|XP_002511228.1| bromodomain-containing protein, putative [Ricinus communis] gi|223550343|gb|EEF51830.1| bromodomain-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/692 (70%), Positives = 555/692 (80%), Gaps = 18/692 (2%)
Query: 1 MAPTVPIDFIGQKQSKKC-LTSQMMGKSRKYSKGHSSGFVPDYRHAVETMAESEGFGSSG 59
MAPTVPI+FIGQK+SKKC L+SQ MGKSRKYSKG SSGFVPDYRHAVET+ ESEGFGSSG
Sbjct: 1 MAPTVPIEFIGQKESKKCWLSSQPMGKSRKYSKGLSSGFVPDYRHAVETVGESEGFGSSG 60
Query: 60 RVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLEQ 119
RVDTEMTASEDS APKRKC+SL+ DG+D F VP+QVL+LSKMS+ ER++L+L+ K +LEQ
Sbjct: 61 RVDTEMTASEDSYAPKRKCMSLSFDGHDTFTVPMQVLSLSKMSRFERKNLKLRFKRELEQ 120
Query: 120 VRVLQKKVASLSSNVV-LSPSSDIRSCNDGQKRPLLESVGGPSVVLAPKGKKRAPNGRNG 178
VR L KKVASL SN LSPSSDIRSC+DG KRP LE++ V AP+ KKR P GRNG
Sbjct: 121 VRFLYKKVASLGSNAAALSPSSDIRSCSDGLKRPPLETLHKSYAVSAPQSKKRGPPGRNG 180
Query: 179 PQTKKGNSGRLEPKKPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPD 238
+TKK + R EP+K A +SNAMLMKQCE LL+RLM HQ+ WVFN PVDV KLNIPD
Sbjct: 181 ARTKKSSHKRSEPEKLAAPVITSNAMLMKQCETLLSRLMLHQYAWVFNNPVDVEKLNIPD 240
Query: 239 YFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKY 298
YFTVIKHPMDLGT+K KIT+G YS PLAFAADVRLTFSNAM YNPP NDVH MA+TL KY
Sbjct: 241 YFTVIKHPMDLGTVKSKITTGAYSSPLAFAADVRLTFSNAMKYNPPGNDVHFMAETLSKY 300
Query: 299 FEVRWKAIEKKLPVTVDMTAVPSRADDMIETETRMGMPPMKKKKVSPKETKIKAEPVRRV 358
FEVRWKAIEKKLPVT+ V RA +ETET++ P KKKK++ ++ +K EP R+V
Sbjct: 301 FEVRWKAIEKKLPVTIGAEPVAPRAGIHVETETKIDPTPAKKKKIAQIDSMVKLEPFRQV 360
Query: 359 MTNEEKRILSTELEALLEELPESIIDFLKEHSAG--ETGEDELEIDIDALSDDTLFALRK 416
M+NEEK LSTELEALL ELPE+IIDFLKEHS + GE E+EIDID LSDDTLF LRK
Sbjct: 361 MSNEEKLKLSTELEALLSELPETIIDFLKEHSHNDDQNGEVEIEIDIDTLSDDTLFELRK 420
Query: 417 LLDDYLLEKQQKQANPGPCEMEVLNESGLSNSSMQLCKGNDLVDEDVDIVGGNDPPVTDI 476
LLDDYLLEK++ QA P EME+LNESG SNSS Q CKGN+ VDED+DI+G NDPPV+
Sbjct: 421 LLDDYLLEKRKNQAKAEPSEMELLNESGFSNSSWQPCKGNEPVDEDIDILGENDPPVSSY 480
Query: 477 PPVAIEKDAANRNSKCSSSSSSSSESGSSSSDSDSGSSSGSEPDAAKASVPANAVEENLV 536
PPV IEKDAA++NSKCSSSSSSSSESGSSS +SG E DAAKASVP + L
Sbjct: 481 PPVEIEKDAAHKNSKCSSSSSSSSESGSSSD-DSDSDNSGGESDAAKASVPYTVTKVYLD 539
Query: 537 SGANLDEKKSEGVPDIGNSSVNSLDQVELNSQGKPVAIVADGHHEGESAPSERQVSPDKL 596
+ L+ S N L ++E NSQG+P+ + DGH EGE+AP +RQVSPDKL
Sbjct: 540 NAIVLE-------------SANGLAKIESNSQGEPLNVETDGHQEGENAPPDRQVSPDKL 586
Query: 597 YRAALLRNRFADTILKAREKALEKGEKRDPEKLRIEREELERRHREEKARLQAEAKAAEE 656
YRAA+LRNRFADTILKAREKALEKGEKRDPEKLR EREELER+ +EEKARLQAEAKAAEE
Sbjct: 587 YRAAILRNRFADTILKAREKALEKGEKRDPEKLRKEREELERQQKEEKARLQAEAKAAEE 646
Query: 657 ARRKAEAEAAAEAKRKRELEREAARQALQMVK 688
A+RKA AEAAAEAKR+RELEREAARQALQ ++
Sbjct: 647 AQRKAAAEAAAEAKRQRELEREAARQALQQME 678
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136059|ref|XP_002322229.1| global transcription factor group [Populus trichocarpa] gi|222869225|gb|EEF06356.1| global transcription factor group [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|359491054|ref|XP_002279401.2| PREDICTED: LOW QUALITY PROTEIN: transcription factor GTE10-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356516581|ref|XP_003526972.1| PREDICTED: transcription factor GTE10-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356508786|ref|XP_003523135.1| PREDICTED: transcription factor GTE10-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356513665|ref|XP_003525531.1| PREDICTED: transcription factor GTE8-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297734375|emb|CBI15622.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449440580|ref|XP_004138062.1| PREDICTED: transcription factor GTE10-like [Cucumis sativus] gi|449501388|ref|XP_004161353.1| PREDICTED: transcription factor GTE10-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|296090258|emb|CBI40077.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359488601|ref|XP_002270843.2| PREDICTED: transcription factor GTE8-like [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 688 | ||||||
| TAIR|locus:2158564 | 1061 | NPX1 "nuclear protein X1" [Ara | 0.802 | 0.520 | 0.442 | 2.3e-110 | |
| TAIR|locus:2086498 | 813 | GTE8 "AT3G27260" [Arabidopsis | 0.617 | 0.522 | 0.451 | 1.4e-103 | |
| TAIR|locus:2082289 | 620 | BET10 "AT3G01770" [Arabidopsis | 0.462 | 0.512 | 0.458 | 1.6e-93 | |
| TAIR|locus:2155715 | 590 | GTE7 "AT5G65630" [Arabidopsis | 0.347 | 0.405 | 0.334 | 2.4e-36 | |
| TAIR|locus:2032692 | 461 | GTE3 "AT1G73150" [Arabidopsis | 0.229 | 0.342 | 0.434 | 5.4e-36 | |
| TAIR|locus:2030958 | 487 | AT1G17790 "AT1G17790" [Arabido | 0.206 | 0.291 | 0.440 | 3.5e-32 | |
| TAIR|locus:2038565 | 766 | GTE4 "AT1G06230" [Arabidopsis | 0.183 | 0.164 | 0.515 | 1.1e-31 | |
| TAIR|locus:2142305 | 494 | AT5G46550 "AT5G46550" [Arabido | 0.184 | 0.257 | 0.476 | 3.5e-28 | |
| TAIR|locus:2044722 | 386 | IMB1 "AT2G34900" [Arabidopsis | 0.348 | 0.621 | 0.305 | 1.5e-23 | |
| MGI|MGI:1888520 | 1400 | Brd4 "bromodomain containing 4 | 0.234 | 0.115 | 0.375 | 4.6e-20 |
| TAIR|locus:2158564 NPX1 "nuclear protein X1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1090 (388.8 bits), Expect = 2.3e-110, P = 2.3e-110
Identities = 254/574 (44%), Positives = 333/574 (58%)
Query: 61 VDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLEQV 120
V +E SE S KR+ LN G DN GV +VL+LSKMS++ER++L KLK +L+QV
Sbjct: 29 VYSERMNSEASPPLKRRRFGLN--G-DNNGVSKEVLSLSKMSRSERKNLVHKLKMELQQV 85
Query: 121 RVLQKKVAXXXXXXXXXXXXDIRSCNDGQKRPLLESVGGPSVVLAPKGKKRAPNGRNGPQ 180
R L KK+A + SC+DG +RP E+ + + +GKKR P + +
Sbjct: 86 RDLSKKIASFSSDTVLLSPYNDHSCSDGPRRPPPENF---ATFVGSQGKKRPPVRSDKQR 142
Query: 181 TKKGNSGRLEPKKPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYF 240
KKG S RL P S + A +MK+CE LL RL SH+ GW F TPVD + LNIPDYF
Sbjct: 143 NKKGPS-RLNV--PT---SYTVASVMKECETLLNRLWSHKSGWPFRTPVDPVMLNIPDYF 196
Query: 241 TVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFE 300
VIKHPMDLGTI+ ++ G+YS PL FAADVRLTFSN++ YNPP N H MA + KYFE
Sbjct: 197 NVIKHPMDLGTIRSRLCKGEYSSPLDFAADVRLTFSNSIAYNPPGNQFHTMAQGISKYFE 256
Query: 301 VRWKAIEKKLPVTVDMTAVPSRADDMIETETRXXXXXXXXXXXXXXXXXXXAEPVRRVMT 360
WK+IEKK+P++ +P + +E+E EP + VMT
Sbjct: 257 SGWKSIEKKIPMSKP-PVIPLTSSASLESEIPFEVAPMRKKEAAMNDNKLRVEPAKLVMT 315
Query: 361 NEEKRIXXXXXXXXXXXXXXSIIDFLKEHSA--GETGEDELEIDIDALSDDTLFALRKLL 418
+ EK+ I D L+E S G++GE E+EIDI+ALSD+ LF +RKLL
Sbjct: 316 DGEKKKLGQDLMALEEDFPQKIADLLREQSGSDGQSGEGEIEIDIEALSDEILFMVRKLL 375
Query: 419 DDYLLEKQQKQANPGPCEMEVLNESGLSNSSMQLCKGNDLVDEDVDIVGGNDPPVTDIPP 478
DDYL EK++ PCEME++++SG SNS +Q KG+ +DEDVDIVGGNDP V+ PP
Sbjct: 376 DDYLREKKKSMEKSEPCEMEIVHDSGFSNSPLQPSKGDLQIDEDVDIVGGNDPSVSSHPP 435
Query: 479 VAIEKDAANRNSKCXXXXXXXXXXXXXXXXXXXXXXXXXXPDAAKASVPANAVEENLVSG 538
+ IEKDAA RN++ D+ KAS P + EE G
Sbjct: 436 LKIEKDAACRNNESSSSSSSSSESGSSSSDSDSCSSSGSETDSIKASKPTSR-EEKKQPG 494
Query: 539 ANLDEKKSEGVPD--IGNSSVNSLDQVELNSQGKPVAIVADGH-HEGESAPSERQVSPD- 594
+D+K+ + + + N S+N LDQ+E K + A + E+AP ERQ+SPD
Sbjct: 495 VGIDKKEDDSNSEKIVVNDSLNELDQLEHTVGEKSTTMDAVVLVPDEETAPPERQISPDS 554
Query: 595 --KLYRAALLRNRFADTILKAREKALEKGEKRDP 626
K YRAA L+NRFADTI+KAREKA KGEK DP
Sbjct: 555 PDKRYRAAFLKNRFADTIMKAREKAFTKGEKGDP 588
|
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| TAIR|locus:2086498 GTE8 "AT3G27260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2082289 BET10 "AT3G01770" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2155715 GTE7 "AT5G65630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2032692 GTE3 "AT1G73150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2030958 AT1G17790 "AT1G17790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2038565 GTE4 "AT1G06230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2142305 AT5G46550 "AT5G46550" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2044722 IMB1 "AT2G34900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| MGI|MGI:1888520 Brd4 "bromodomain containing 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GTE905 | global transcription factor group (709 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 688 | |||
| cd05506 | 99 | cd05506, Bromo_plant1, Bromodomain, uncharacterize | 7e-59 | |
| cd05498 | 102 | cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_lik | 3e-38 | |
| cd04369 | 99 | cd04369, Bromodomain, Bromodomain | 1e-31 | |
| smart00297 | 107 | smart00297, BROMO, bromo domain | 2e-30 | |
| cd05499 | 102 | cd05499, Bromo_BDF1_2_II, Bromodomain | 8e-29 | |
| cd05509 | 101 | cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like s | 7e-26 | |
| cd05500 | 103 | cd05500, Bromo_BDF1_2_I, Bromodomain | 6e-25 | |
| cd05497 | 107 | cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like | 7e-25 | |
| pfam00439 | 84 | pfam00439, Bromodomain, Bromodomain | 2e-22 | |
| cd05503 | 97 | cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BA | 6e-22 | |
| cd05495 | 108 | cd05495, Bromo_cbp_like, Bromodomain, cbp_like sub | 6e-21 | |
| cd05504 | 115 | cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like o | 8e-20 | |
| cd05496 | 119 | cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat I | 1e-18 | |
| cd05502 | 109 | cd05502, Bromo_tif1_like, Bromodomain; tif1_like s | 7e-18 | |
| cd05505 | 97 | cd05505, Bromo_WSTF_like, Bromodomain; Williams sy | 5e-15 | |
| cd05515 | 105 | cd05515, Bromo_polybromo_V, Bromodomain, polybromo | 1e-14 | |
| cd05511 | 112 | cd05511, Bromo_TFIID, Bromodomain, TFIID-like subf | 1e-13 | |
| cd05510 | 112 | cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like s | 2e-13 | |
| cd05528 | 112 | cd05528, Bromo_AAA, Bromodomain; sub-family co-occ | 5e-12 | |
| cd05512 | 98 | cd05512, Bromo_brd1_like, Bromodomain; brd1_like s | 3e-11 | |
| COG5076 | 371 | COG5076, COG5076, Transcription factor involved in | 8e-11 | |
| cd05513 | 98 | cd05513, Bromo_brd7_like, Bromodomain, brd7_like s | 1e-10 | |
| cd05520 | 103 | cd05520, Bromo_polybromo_III, Bromodomain, polybro | 5e-10 | |
| cd05521 | 106 | cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in | 6e-10 | |
| cd05507 | 104 | cd05507, Bromo_brd8_like, Bromodomain, brd8_like s | 7e-10 | |
| cd05517 | 103 | cd05517, Bromo_polybromo_II, Bromodomain, polybrom | 2e-09 | |
| cd05522 | 104 | cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II i | 3e-09 | |
| cd05529 | 128 | cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe | 1e-08 | |
| cd05518 | 103 | cd05518, Bromo_polybromo_IV, Bromodomain, polybrom | 7e-08 | |
| cd05524 | 113 | cd05524, Bromo_polybromo_I, Bromodomain, polybromo | 3e-07 | |
| cd05519 | 103 | cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfam | 8e-07 | |
| cd05525 | 106 | cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-fa | 9e-07 | |
| pfam09726 | 680 | pfam09726, Macoilin, Transmembrane protein | 1e-06 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 4e-06 | |
| cd05516 | 107 | cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like su | 5e-06 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 1e-05 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 1e-05 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 1e-05 | |
| cd05494 | 114 | cd05494, Bromodomain_1, Bromodomain; uncharacteriz | 2e-05 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 6e-05 | |
| PLN02316 | 1036 | PLN02316, PLN02316, synthase/transferase | 1e-04 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 2e-04 | |
| cd05508 | 99 | cd05508, Bromo_RACK7, Bromodomain, RACK7_like subf | 2e-04 | |
| cd05501 | 102 | cd05501, Bromo_SP100C_like, Bromodomain, SP100C_li | 3e-04 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 4e-04 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 0.001 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 0.002 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 0.002 | |
| pfam07321 | 152 | pfam07321, YscO, Type III secretion protein YscO | 0.002 | |
| pfam07946 | 322 | pfam07946, DUF1682, Protein of unknown function (D | 0.002 | |
| pfam13904 | 261 | pfam13904, DUF4207, Domain of unknown function (DU | 0.002 | |
| PRK05035 | 695 | PRK05035, PRK05035, electron transport complex pro | 0.003 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 0.003 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.003 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 0.004 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.004 | |
| PRK07735 | 430 | PRK07735, PRK07735, NADH dehydrogenase subunit C; | 0.004 |
| >gnl|CDD|99938 cd05506, Bromo_plant1, Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
Score = 192 bits (491), Expect = 7e-59
Identities = 65/99 (65%), Positives = 76/99 (76%)
Query: 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDP 264
+MKQC LL +LM H++GWVFN PVDV+ L +PDYF +IK PMDLGT+K K+ G+YS P
Sbjct: 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSP 60
Query: 265 LAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRW 303
FAADVRLTF+NAM YNPP NDVH MA L K FE RW
Sbjct: 61 EEFAADVRLTFANAMRYNPPGNDVHTMAKELLKIFETRW 99
|
Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 99 |
| >gnl|CDD|99930 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
| >gnl|CDD|99922 cd04369, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
| >gnl|CDD|197636 smart00297, BROMO, bromo domain | Back alignment and domain information |
|---|
| >gnl|CDD|99931 cd05499, Bromo_BDF1_2_II, Bromodomain | Back alignment and domain information |
|---|
| >gnl|CDD|99941 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain | Back alignment and domain information |
|---|
| >gnl|CDD|99929 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
| >gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
| >gnl|CDD|99935 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99927 cd05495, Bromo_cbp_like, Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99936 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99928 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99934 cd05502, Bromo_tif1_like, Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99937 cd05505, Bromo_WSTF_like, Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
| >gnl|CDD|99946 cd05515, Bromo_polybromo_V, Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
| >gnl|CDD|99943 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99942 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99957 cd05528, Bromo_AAA, Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
| >gnl|CDD|99944 cd05512, Bromo_brd1_like, Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|99945 cd05513, Bromo_brd7_like, Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
| >gnl|CDD|99952 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >gnl|CDD|99939 cd05507, Bromo_brd8_like, Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|99948 cd05517, Bromo_polybromo_II, Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
| >gnl|CDD|99953 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99949 cd05518, Bromo_polybromo_IV, Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
| >gnl|CDD|99954 cd05524, Bromo_polybromo_I, Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
| >gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >gnl|CDD|99955 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
| >gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|99947 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|99926 cd05494, Bromodomain_1, Bromodomain; uncharacterized subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|99940 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99933 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO | Back alignment and domain information |
|---|
| >gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) | Back alignment and domain information |
|---|
| >gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
| >gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 688 | |||
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| cd05496 | 119 | Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub | 99.94 | |
| cd05495 | 108 | Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb | 99.94 | |
| cd05497 | 107 | Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily | 99.94 | |
| cd05505 | 97 | Bromo_WSTF_like Bromodomain; Williams syndrome tra | 99.94 | |
| cd05506 | 99 | Bromo_plant1 Bromodomain, uncharacterized subfamil | 99.93 | |
| cd05503 | 97 | Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s | 99.93 | |
| cd05498 | 102 | Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil | 99.93 | |
| cd05504 | 115 | Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li | 99.93 | |
| cd05499 | 102 | Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam | 99.92 | |
| cd05507 | 104 | Bromo_brd8_like Bromodomain, brd8_like subgroup. I | 99.92 | |
| cd05500 | 103 | Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami | 99.92 | |
| cd05502 | 109 | Bromo_tif1_like Bromodomain; tif1_like subfamily. | 99.92 | |
| cd05501 | 102 | Bromo_SP100C_like Bromodomain, SP100C_like subfami | 99.92 | |
| cd05510 | 112 | Bromo_SPT7_like Bromodomain; SPT7_like subfamily. | 99.92 | |
| cd05509 | 101 | Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. | 99.92 | |
| cd05508 | 99 | Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC | 99.92 | |
| cd05516 | 107 | Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s | 99.91 | |
| cd05513 | 98 | Bromo_brd7_like Bromodomain, brd7_like subgroup. T | 99.91 | |
| cd05512 | 98 | Bromo_brd1_like Bromodomain; brd1_like subfamily. | 99.9 | |
| cd05528 | 112 | Bromo_AAA Bromodomain; sub-family co-occurring wit | 99.9 | |
| cd05511 | 112 | Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum | 99.9 | |
| cd05519 | 103 | Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci | 99.89 | |
| cd05515 | 105 | Bromo_polybromo_V Bromodomain, polybromo repeat V. | 99.89 | |
| cd05524 | 113 | Bromo_polybromo_I Bromodomain, polybromo repeat I. | 99.88 | |
| cd05529 | 128 | Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like | 99.88 | |
| cd05517 | 103 | Bromo_polybromo_II Bromodomain, polybromo repeat I | 99.87 | |
| smart00297 | 107 | BROMO bromo domain. | 99.87 | |
| cd05525 | 106 | Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 | 99.87 | |
| cd05520 | 103 | Bromo_polybromo_III Bromodomain, polybromo repeat | 99.87 | |
| cd05518 | 103 | Bromo_polybromo_IV Bromodomain, polybromo repeat I | 99.87 | |
| cd05522 | 104 | Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l | 99.84 | |
| PF00439 | 84 | Bromodomain: Bromodomain; InterPro: IPR001487 Brom | 99.84 | |
| cd04369 | 99 | Bromodomain Bromodomain. Bromodomains are found in | 99.84 | |
| cd05521 | 106 | Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik | 99.83 | |
| cd05492 | 109 | Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | 99.82 | |
| cd05526 | 110 | Bromo_polybromo_VI Bromodomain, polybromo repeat V | 99.72 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 99.68 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.67 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 99.38 | |
| cd05494 | 114 | Bromodomain_1 Bromodomain; uncharacterized subfami | 99.37 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 99.1 | |
| cd05491 | 119 | Bromo_TBP7_like Bromodomain; TBP7_like subfamily, | 98.9 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 98.89 | |
| KOG1827 | 629 | consensus Chromatin remodeling complex RSC, subuni | 98.77 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 98.76 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 98.61 | |
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 98.57 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 98.46 | |
| KOG1828 | 418 | consensus IRF-2-binding protein CELTIX-1, contains | 97.91 | |
| KOG1828 | 418 | consensus IRF-2-binding protein CELTIX-1, contains | 97.87 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 97.74 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 96.59 | |
| cd05493 | 131 | Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL- | 95.4 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 95.25 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 94.8 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 94.71 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 93.83 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 93.28 | |
| cd05497 | 107 | Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily | 92.22 | |
| PLN03086 | 567 | PRLI-interacting factor K; Provisional | 92.14 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 91.21 | |
| KOG3054 | 299 | consensus Uncharacterized conserved protein [Funct | 90.77 | |
| cd05518 | 103 | Bromo_polybromo_IV Bromodomain, polybromo repeat I | 90.45 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 90.28 | |
| KOG3054 | 299 | consensus Uncharacterized conserved protein [Funct | 89.19 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 88.49 | |
| PLN03086 | 567 | PRLI-interacting factor K; Provisional | 87.94 | |
| KOG3116 | 177 | consensus Predicted C3H1-type Zn-finger protein [G | 87.76 | |
| cd05495 | 108 | Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb | 87.38 | |
| PTZ00121 | 2084 | MAEBL; Provisional | 86.88 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 86.56 | |
| cd05513 | 98 | Bromo_brd7_like Bromodomain, brd7_like subgroup. T | 86.25 | |
| cd05501 | 102 | Bromo_SP100C_like Bromodomain, SP100C_like subfami | 85.81 | |
| cd05524 | 113 | Bromo_polybromo_I Bromodomain, polybromo repeat I. | 85.77 | |
| cd05509 | 101 | Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. | 85.32 | |
| cd05507 | 104 | Bromo_brd8_like Bromodomain, brd8_like subgroup. I | 85.29 | |
| cd05504 | 115 | Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li | 84.72 | |
| cd05511 | 112 | Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum | 84.23 | |
| cd05520 | 103 | Bromo_polybromo_III Bromodomain, polybromo repeat | 84.14 | |
| cd05508 | 99 | Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC | 83.94 | |
| KOG4364 | 811 | consensus Chromatin assembly factor-I [Chromatin s | 83.9 | |
| cd05505 | 97 | Bromo_WSTF_like Bromodomain; Williams syndrome tra | 83.19 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 82.99 | |
| cd05496 | 119 | Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub | 82.79 | |
| KOG2072 | 988 | consensus Translation initiation factor 3, subunit | 82.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 82.41 | |
| KOG2357 | 440 | consensus Uncharacterized conserved protein [Funct | 81.98 | |
| cd05529 | 128 | Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like | 81.62 | |
| cd05512 | 98 | Bromo_brd1_like Bromodomain; brd1_like subfamily. | 81.54 | |
| cd05517 | 103 | Bromo_polybromo_II Bromodomain, polybromo repeat I | 81.51 | |
| PLN02316 | 1036 | synthase/transferase | 81.21 |
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-43 Score=401.99 Aligned_cols=536 Identities=27% Similarity=0.362 Sum_probs=329.9
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCC--------------------------------Cc
Q 005614 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNID--------------------------------GY 86 (688)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~--------------------------------~~ 86 (688)
+|+|+..|.++|+.+ ++-.||-++||.+...|...+..+.-|.. +-
T Consensus 24 ~~~~~~~~~~~~d~~--~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~ 101 (640)
T KOG1474|consen 24 LPAYYEIIKRPMDIG--TIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSMPSDEEDK 101 (640)
T ss_pred chhhhcccCCCCCch--hhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchhhcccccccccccccCC
Confidence 689999999999888 89999999999998888877765543311 11
Q ss_pred cccCCccceeecCcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCcccCC-CccccccCCCCCCCCccCCCCCccccC
Q 005614 87 DNFGVPLQVLTLSKMSQTERRSLELKLKTDLEQVRVLQKKVASLSSNVVLSP-SSDIRSCNDGQKRPLLESVGGPSVVLA 165 (688)
Q Consensus 87 ~~f~v~~~~~~~s~~s~~e~~~L~~Rl~~eLeqvR~l~kki~~~~~~~~~sp-~~~~~s~~~~~~~~~~~s~~~~s~~~s 165 (688)
..+.++..++++.+++..++++|..||..+|+|||.+.++++.....-++++ ...... .+.+ ...........
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~d~~~ 175 (640)
T KOG1474|consen 102 SSVGPKASKIPLDKDSSSQVRKLSERLKQELQQVRPLTKAVEFSPEPSVVSPVSPASQP--FKSK----NGVKKVADTCV 175 (640)
T ss_pred cccccccccCcCCCCchhhhhhhhhccccccccCCcccccccccccccccCCCCCcccc--cccc----cchhhhhcccc
Confidence 1234666788999999999999999999999999999999972222222333 110000 0000 00000000000
Q ss_pred CCCCCCCCCCCCCCCCcCCC--CC--CCCCC-----CCCCCCCCchHHHHHHHHHHHHHHHcCCCCccccCcccccccCC
Q 005614 166 PKGKKRAPNGRNGPQTKKGN--SG--RLEPK-----KPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNI 236 (688)
Q Consensus 166 ~~~kKr~~~~~~~~~~kr~~--~~--r~~~~-----k~~~~~~~~~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~ 236 (688)
... +.........+.+++. .+ ..... .........+..+++.|..||..||.|+++|+|+.|||++.+++
T Consensus 176 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgL 254 (640)
T KOG1474|consen 176 KSY-KSKSEREPSPGQKREGTVAPNSSRESGDSAAEEEAKPKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGL 254 (640)
T ss_pred ccc-cccCcCCCCccccccccccCccccccccccccccccccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCC
Confidence 000 0000000000101110 00 00000 12233445678999999999999999999999999999999999
Q ss_pred CchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCC
Q 005614 237 PDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKLPVTVDM 316 (688)
Q Consensus 237 PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gs~V~~~A~~L~~~Fe~~~k~i~~k~p~~~~~ 316 (688)
||||+||++||||+||++||.+|.|.++.+|++||||||+|||+||++|++||.||..|+.+|+.+|+.+...+......
T Consensus 255 pDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~ 334 (640)
T KOG1474|consen 255 PDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESA 334 (640)
T ss_pred cchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976554321000
Q ss_pred -CCCCCCCcchhHHhhhcCCCCccccCCCCccccccccccccCCCHHHHHHHHHHHHhhcccChHHHHHHHhhhcCC--C
Q 005614 317 -TAVPSRADDMIETETRMGMPPMKKKKVSPKETKIKAEPVRRVMTNEEKRILSTELEALLEELPESIIDFLKEHSAG--E 393 (688)
Q Consensus 317 -e~~p~~~~~~~e~~~~~~~P~~kkrK~sp~~~~~~~ep~kr~mT~eEK~~L~~~I~~L~~E~l~~Iv~IIk~~~~~--~ 393 (688)
........ .......+....++.+-.......++....|+.+|+..+...+..++.+...+++..++..... .
T Consensus 335 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 410 (640)
T KOG1474|consen 335 VKEEAGMAS----SDQIPSNSVEGPRSSSFESRESASEPSSELMSEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPR 410 (640)
T ss_pred ccccccccc----ccccccccccCcccccchhcccccCcccccccHHhhhhhHhhhhcchhhhhHHHHhhhhccccCccc
Confidence 00000000 0000000001111111111112233345689999999999999999999999999999887733 3
Q ss_pred CCCCcEEEEccCCCHHHHHHHHHH--HHHHHHHhhhccCCCCCCccccccccCCCCCccccccCCCCCCccccccCCCCC
Q 005614 394 TGEDELEIDIDALSDDTLFALRKL--LDDYLLEKQQKQANPGPCEMEVLNESGLSNSSMQLCKGNDLVDEDVDIVGGNDP 471 (688)
Q Consensus 394 ~~~dEIEIDId~L~~~TL~eL~~~--V~~~l~ek~K~~~k~e~~~~e~~~~s~~snSs~~~~k~~e~~eE~vdi~gg~~~ 471 (688)
....++++++..+... |.+... .........+..+..+. ..+-+..+++ .+
T Consensus 411 ~~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~~t~~~~---------------------~~l~~~~~~~----~~ 463 (640)
T KOG1474|consen 411 KIEEELESDKRPLVTG--KLIKEKNKKEKAANENKRDMTAPEK---------------------AKLKELLQNL----LP 463 (640)
T ss_pred cccccccccccccchh--hhhhhhhcccccccccccccccccc---------------------ccchhhccCC----CC
Confidence 3445666666555544 333321 00001111111110000 0111111111 11
Q ss_pred CCCCCCcchhcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCccchhhhcccCCCccccccCCCCC
Q 005614 472 PVTDIPPVAIEKDAANRNSKCSSSSSSSSESGSSSSDSDSGSSSGSEPDAAKASVPANAVEENLVSGANLDEKKSEGVPD 551 (688)
Q Consensus 472 p~ss~~Pv~iek~~~~~~s~sSSsSSSSS~S~SSSS~SdS~sSs~s~s~a~~~~~~~~~~~~~~~s~~~~d~~~~~~~~~ 551 (688)
|-....++.+.+.
T Consensus 464 p~~l~~~~~~~~~------------------------------------------------------------------- 476 (640)
T KOG1474|consen 464 PNKLESIVEILKP------------------------------------------------------------------- 476 (640)
T ss_pred CccccCcccccch-------------------------------------------------------------------
Confidence 1111122222100
Q ss_pred CCCCCCcccccccccCCCCCCcccccCCCCCCCCCCCCCCChhHHHHHHhhhhhhhhhHHHHHH-HHhh-hcCCCChHHH
Q 005614 552 IGNSSVNSLDQVELNSQGKPVAIVADGHHEGESAPSERQVSPDKLYRAALLRNRFADTILKARE-KALE-KGEKRDPEKL 629 (688)
Q Consensus 552 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~sp~k~~raa~l~~rfadti~ka~~-k~l~-~g~k~dp~~~ 629 (688)
......|.+.....+.....+. .--+..|+.-++..++.+++..+...|++-+.+++. +.+- .....+|+++
T Consensus 477 --~~~~~~l~~~~~~~~~~~~~vd----~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 550 (640)
T KOG1474|consen 477 --EKRQLDLSQNDDEIELDLDSVD----GSQSREPSSNPLEIETIRETLKLSTERELELSKASSSRSLMRNRSGSLPERL 550 (640)
T ss_pred --hhhcccccccccchhhcccccc----cccccCCCcccchhhhhhccccchhhHHHHHHHHhhhhhhccCcccccccch
Confidence 0000001010011111111110 001111225677789999999999999999999998 5554 4566789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005614 630 RIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQMVK 688 (688)
Q Consensus 630 ~~e~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~r~~~r~~lq~m~ 688 (688)
.+..++.+.++..++++.++.-..++.++..+.+.+.. .++.++.+++.++.++..|.
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~ 608 (640)
T KOG1474|consen 551 SRSISEEKLREKSEKSSSEASSSSSEDGENKAASSGSL-SPSSSSLERESNNSAEANGS 608 (640)
T ss_pred hhhhhHHhhhhhhHhhhhhhhhhhHHHHhhcccccccc-CccccccccchhHHHHhccc
Confidence 99999999999999999999999998888766543333 46677899999999988763
|
|
| >cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
| >cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
| >cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
| >cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
| >cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
| >cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
| >cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
| >cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
| >cd05499 Bromo_BDF1_2_II Bromodomain | Back alignment and domain information |
|---|
| >cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
| >cd05500 Bromo_BDF1_2_I Bromodomain | Back alignment and domain information |
|---|
| >cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
| >cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
| >cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
| >cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
| >cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
| >cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
| >cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
| >cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
| >cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
| >cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
| >cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
| >cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
| >cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
| >cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
| >smart00297 BROMO bromo domain | Back alignment and domain information |
|---|
| >cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
| >cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
| >cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
| >cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] | Back alignment and domain information |
|---|
| >cd04369 Bromodomain Bromodomain | Back alignment and domain information |
|---|
| >cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | Back alignment and domain information |
|---|
| >cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI | Back alignment and domain information |
|---|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi | Back alignment and domain information |
|---|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] | Back alignment and domain information |
|---|
| >KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] | Back alignment and domain information |
|---|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
| >cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
| >PLN03086 PRLI-interacting factor K; Provisional | Back alignment and domain information |
|---|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG3054 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG3054 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
| >PLN03086 PRLI-interacting factor K; Provisional | Back alignment and domain information |
|---|
| >KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
| >PTZ00121 MAEBL; Provisional | Back alignment and domain information |
|---|
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
| >cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
| >cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
| >cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
| >cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
| >cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
| >cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
| >cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
| >cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
| >KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
| >KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2357 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
| >cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
| >cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
| >PLN02316 synthase/transferase | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 688 | ||||
| 2lsp_B | 128 | Solution Structures Of Brd4 Second Bromodomain With | 3e-20 | ||
| 3jvl_A | 120 | Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Le | 3e-20 | ||
| 2ouo_A | 130 | Crystal Structure Of The Bromo Domain 2 In Human Br | 3e-20 | ||
| 3oni_A | 114 | Crystal Structure Of The Second Bromodomain Of Huma | 4e-20 | ||
| 2dvv_A | 112 | Crystal Structure Of The Second Bromodomain Of The | 1e-19 | ||
| 2g4a_A | 116 | Solution Structure Of A Bromodomain From Ring3 Prot | 3e-19 | ||
| 2e7n_A | 117 | Solution Structure Of The Second Bromodomain From H | 6e-19 | ||
| 2oo1_A | 113 | Crystal Structure Of The Bromo Domain 2 Of Human Br | 8e-19 | ||
| 2i8n_A | 114 | Solution Structure Of The Second Bromodomain Of Brd | 9e-19 | ||
| 2wp1_A | 126 | Structure Of Brdt Bromodomain 2 Bound To An Acetyla | 1e-18 | ||
| 4don_A | 145 | Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihy | 2e-16 | ||
| 4a9e_A | 154 | N-Terminal Bromodomain Of Human Brd2 With 3-Methyl- | 2e-16 | ||
| 3jvj_A | 131 | Crystal Structure Of The Bromodomain 1 In Mouse Brd | 2e-16 | ||
| 2ydw_A | 153 | Crystal Structure Of The First Bromodomain Of Human | 3e-16 | ||
| 2oss_A | 127 | Crystal Structure Of The Bromo Domain 1 In Human Br | 3e-16 | ||
| 4hbw_A | 127 | Crystal Structure Of The First Bromodomain Of Human | 3e-16 | ||
| 3g0l_A | 117 | Crystal Structure Of Human Bromodomain Adjacent To | 4e-16 | ||
| 2dww_A | 114 | Crystal Structure Of Bromodomain-Containing Protein | 6e-16 | ||
| 2l5e_A | 128 | Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Lengt | 8e-16 | ||
| 2e7o_A | 112 | Solution Structure Of The Bromodomain From Human Br | 1e-15 | ||
| 2nxb_A | 123 | Crystal Structure Of Human Bromodomain Containing P | 1e-15 | ||
| 2rfj_A | 119 | Crystal Structure Of The Bromo Domain 1 In Human Br | 1e-15 | ||
| 2yw5_A | 138 | Solution Structure Of The Bromodomain From Human Br | 2e-15 | ||
| 2wp2_A | 120 | Structure Of Brdt Bromodomain Bd1 Bound To A Diacet | 3e-14 | ||
| 2yyn_A | 135 | Crystal Sturcture Of Human Bromodomain Protein Leng | 4e-14 | ||
| 1x0j_A | 122 | Crystal Structure Analysis Of The N-Terminal Bromod | 8e-14 | ||
| 3aqa_A | 128 | Crystal Structure Of The Human Brd2 Bd1 Bromodomain | 1e-13 | ||
| 1jsp_B | 121 | Nmr Structure Of Cbp Bromodomain In Complex With P5 | 2e-13 | ||
| 3dwy_A | 119 | Crystal Structure Of The Bromodomain Of Human Crebb | 2e-13 | ||
| 3i3j_A | 124 | Crystal Structure Of The Bromodomain Of Human Ep300 | 3e-13 | ||
| 3o33_A | 184 | Crystal Structure Of Trim24 Phd-Bromo In The Free S | 4e-13 | ||
| 1e6i_A | 121 | Bromodomain From Gcn5 Complexed With Acetylated H4 | 4e-12 | ||
| 3u5m_A | 207 | Crystal Structure Of Trim33 Phd-Bromo In The Free S | 9e-12 | ||
| 3q2e_A | 123 | Crystal Structure Of The Second Bromodomain Of Huma | 1e-11 | ||
| 3fkm_X | 166 | Plasmodium Falciparum Bromodomain-Containing Protei | 2e-11 | ||
| 3gg3_A | 119 | Crystal Structure Of The Bromodomain Of Human Pcaf | 2e-11 | ||
| 1n72_A | 118 | Structure And Ligand Of A Histone Acetyltransferase | 4e-11 | ||
| 3mb3_A | 135 | Crystal Structure Of The Second Bromodomain Of Plec | 1e-10 | ||
| 3d7c_A | 112 | Crystal Structure Of The Bromodomain Of Human Gcn5, | 3e-10 | ||
| 1f68_A | 103 | Nmr Solution Structure Of The Bromodomain From Huma | 3e-10 | ||
| 3qzv_A | 174 | Crystal Structure Of Bptf Phd-Linker-Bromo In Compl | 1e-09 | ||
| 2ri7_A | 174 | Crystal Structure Of Phd Finger-Linker-Bromodomain | 2e-09 | ||
| 3qzs_A | 115 | Crystal Structure Of Bptf Bromo In Complex With His | 2e-09 | ||
| 3uv2_A | 126 | Crystal Structure Of The Bromodomain Of Human Nucle | 3e-09 | ||
| 3qzt_A | 115 | Crystal Structure Of Bptf Bromo In Complex With His | 3e-09 | ||
| 2ktb_B | 121 | Solution Structure Of The Second Bromodomain Of Hum | 4e-09 | ||
| 3ljw_A | 120 | Crystal Structure Of The Second Bromodomain Of Huma | 4e-09 | ||
| 3hmf_A | 116 | Crystal Structure Of The Second Bromodomain Of Huma | 6e-09 | ||
| 2f6j_A | 174 | Crystal Structure Of Phd Finger-Linker-Bromodomain | 5e-08 | ||
| 3aad_A | 292 | Structure Of The Histone Chaperone Cia/asf1-double | 5e-08 | ||
| 3hme_A | 123 | Crystal Structure Of Human Bromodomain Containing 9 | 7e-08 | ||
| 3uv5_A | 265 | Crystal Structure Of The Tandem Bromodomains Of Hum | 7e-08 | ||
| 1eqf_A | 280 | Crystal Structure Of The Double Bromodomain Module | 9e-08 | ||
| 3uv4_A | 158 | Crystal Structure Of The Second Bromodomain Of Huma | 1e-07 | ||
| 3lxj_A | 136 | Crystal Structure Of The Bromodomain Of Human Aaa D | 1e-07 | ||
| 3hmh_A | 155 | Crystal Structure Of The Second Bromodomain Of Huma | 7e-07 | ||
| 3nxb_A | 116 | Crystal Structure Of The Bromodomain Of Human Cecr2 | 1e-06 | ||
| 2r10_A | 361 | Structure Of An Acetylated Rsc4 Tandem Bromodomain | 3e-06 | ||
| 2r0v_A | 346 | Structure Of The Rsc4 Tandem Bromodomain Acetylated | 3e-06 | ||
| 3g0j_A | 124 | Crystal Structure Of The Fifth Bromodomain Of Human | 5e-06 | ||
| 3dai_A | 130 | Crystal Structure Of The Bromodomain Of The Human A | 6e-06 | ||
| 2yqd_A | 120 | Solution Structure Of The Fifth Bromodomain From Mo | 8e-06 | ||
| 2dkw_A | 131 | Solution Structure Of The Bromodomain Of Human Prot | 2e-05 | ||
| 3tlp_A | 150 | Crystal Structure Of The Fourth Bromodomain Of Huma | 2e-05 | ||
| 2r0s_A | 285 | Crystal Structure Of The Rsc4 Tandem Bromodomain Le | 4e-05 | ||
| 2r0y_A | 311 | Structure Of The Rsc4 Tandem Bromodomain In Complex | 5e-05 | ||
| 3rcw_A | 135 | Crystal Structure Of The Bromodomain Of Human Brd1 | 5e-05 | ||
| 2d9e_A | 121 | Solution Structure Of The Bromodomain Of Peregrin L | 8e-05 | ||
| 2i7k_A | 117 | Solution Structure Of The Bromodomain Of Human Brd7 | 2e-04 | ||
| 3iu5_A | 116 | Crystal Structure Of The First Bromodomain Of Human | 4e-04 |
| >pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With Nf-Kb-K310ac Peptide Length = 128 | Back alignment and structure |
|
| >pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Length = 120 | Back alignment and structure |
| >pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human Bromodomain Containing Protein 4 (Brd4) Length = 130 | Back alignment and structure |
| >pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2 In Complex With The Inhibitor Jq1 Length = 114 | Back alignment and structure |
| >pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human Brd2 Protein Length = 112 | Back alignment and structure |
| >pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein Length = 116 | Back alignment and structure |
| >pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human Bromodomain-Containing Protein 3 Length = 117 | Back alignment and structure |
| >pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human Bromodomain Containing Protein 3 (Brd3) Length = 113 | Back alignment and structure |
| >pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4 Length = 114 | Back alignment and structure |
| >pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated Histone H3 Peptide Length = 126 | Back alignment and structure |
| >pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihydro-3-methyl-2(1h)- Quinazolinon Length = 145 | Back alignment and structure |
| >pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One Length = 154 | Back alignment and structure |
| >pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4 Length = 131 | Back alignment and structure |
| >pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2 With The Inhibitor Gw841819x Length = 153 | Back alignment and structure |
| >pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein 4 (Brd4) Length = 127 | Back alignment and structure |
| >pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In Complex With A Quinazoline Ligand Length = 127 | Back alignment and structure |
| >pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc Finger Domain 2b (Baz2b) Length = 117 | Back alignment and structure |
| >pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4 Length = 114 | Back alignment and structure |
| >pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Length = 128 | Back alignment and structure |
| >pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Adjacent To Zinc Finger Domain 2b Length = 112 | Back alignment and structure |
| >pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein 3 (Brd3) Length = 123 | Back alignment and structure |
| >pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein, Testis Specific (Brdt) Length = 119 | Back alignment and structure |
| >pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Containing Protein 3 Length = 138 | Back alignment and structure |
| >pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated Histone H4 Peptide. Length = 120 | Back alignment and structure |
| >pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein Length = 135 | Back alignment and structure |
| >pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain Of Human Brd2 Length = 122 | Back alignment and structure |
| >pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In Complex With A Brd2-Interactive Compound, Bic1 Length = 128 | Back alignment and structure |
| >pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53 Peptide Length = 121 | Back alignment and structure |
| >pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp Length = 119 | Back alignment and structure |
| >pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300 Length = 124 | Back alignment and structure |
| >pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184 | Back alignment and structure |
| >pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide Length = 121 | Back alignment and structure |
| >pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State Length = 207 | Back alignment and structure |
| >pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Bromodomain And Wd Repeat-Containing Protein 1 Isoform A (Wdr9) Length = 123 | Back alignment and structure |
| >pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein Pf10_0328 Length = 166 | Back alignment and structure |
| >pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf Length = 119 | Back alignment and structure |
| >pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase Bromodomain Length = 118 | Back alignment and structure |
| >pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin Homology Domain Interacting Protein (Phip) Length = 135 | Back alignment and structure |
| >pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The General Control Of Amino-Acid Synthesis Protein 5-Like 2 Length = 112 | Back alignment and structure |
| >pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5 Length = 103 | Back alignment and structure |
| >pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With Histone H4k12ac Peptide Length = 174 | Back alignment and structure |
| >pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e Mutant From Human Bptf In The H3(1-9)k4me2 Bound State Length = 174 | Back alignment and structure |
| >pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form I Length = 115 | Back alignment and structure |
| >pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human Nucleosome-Remodeling Factor Subunit Bptf Length = 126 | Back alignment and structure |
| >pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form Ii Length = 115 | Back alignment and structure |
| >pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human Polybr Complex With An Acetylated Peptide From Histone 3 Length = 121 | Back alignment and structure |
| >pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Polybromo Length = 120 | Back alignment and structure |
| >pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 | Back alignment and structure |
| >pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State Length = 174 | Back alignment and structure |
| >pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double Bromodomain Complex Linking Histone Modifications And Site-specific Histone Eviction Length = 292 | Back alignment and structure |
| >pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9 Isoform 1 (Brd9) Length = 123 | Back alignment and structure |
| >pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 265 | Back alignment and structure |
| >pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From Human Tafii250 Length = 280 | Back alignment and structure |
| >pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 158 | Back alignment and structure |
| >pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain Containing 2b (Atad2b) Length = 136 | Back alignment and structure |
| >pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l) Length = 155 | Back alignment and structure |
| >pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2 Length = 116 | Back alignment and structure |
| >pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone Chimera Length = 361 | Back alignment and structure |
| >pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25 Length = 346 | Back alignment and structure |
| >pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 124 | Back alignment and structure |
| >pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2 Length = 130 | Back alignment and structure |
| >pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse Polybromo-1 Length = 120 | Back alignment and structure |
| >pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein Kiaa1240 Length = 131 | Back alignment and structure |
| >pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 150 | Back alignment and structure |
| >pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain Length = 285 | Back alignment and structure |
| >pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With An Acetylated H3 Peptide Length = 311 | Back alignment and structure |
| >pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1 Length = 135 | Back alignment and structure |
| >pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin Length = 121 | Back alignment and structure |
| >pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7 Protein Length = 117 | Back alignment and structure |
| >pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Length = 120 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 7e-52
Identities = 48/118 (40%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 196 GAASSSNAMLMKQCENLLTRLMSHQ---FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTI 252
GA S + +K C +L + + + + W F PVDV L + DY +IKHPMD+ TI
Sbjct: 1 GAMGSKISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTI 60
Query: 253 KCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKL 310
K K+ S +Y D F ADVRL FSN YNPP ++V MA L+ FE+R+ + +
Sbjct: 61 KSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEP 118
|
| >2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Length = 130 | Back alignment and structure |
|---|
| >2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Length = 127 | Back alignment and structure |
|---|
| >3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Length = 119 | Back alignment and structure |
|---|
| >4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Length = 154 | Back alignment and structure |
|---|
| >3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Length = 166 | Back alignment and structure |
|---|
| >3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
| >2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Length = 135 | Back alignment and structure |
|---|
| >3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Length = 117 | Back alignment and structure |
|---|
| >3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Length = 135 | Back alignment and structure |
|---|
| >1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Length = 121 | Back alignment and structure |
|---|
| >3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Length = 112 | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 | Back alignment and structure |
|---|
| >3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
| >3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 | Back alignment and structure |
|---|
| >2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
| >2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
| >3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Length = 135 | Back alignment and structure |
|---|
| >3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Length = 158 | Back alignment and structure |
|---|
| >3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Length = 120 | Back alignment and structure |
|---|
| >3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Length = 130 | Back alignment and structure |
|---|
| >2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 131 | Back alignment and structure |
|---|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 | Back alignment and structure |
|---|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 | Back alignment and structure |
|---|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
| >3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Length = 150 | Back alignment and structure |
|---|
| >3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Length = 130 | Back alignment and structure |
|---|
| >2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Length = 129 | Back alignment and structure |
|---|
| >3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
| >3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Length = 124 | Back alignment and structure |
|---|
| >2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
| >3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Length = 126 | Back alignment and structure |
|---|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 | Back alignment and structure |
|---|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 | Back alignment and structure |
|---|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 | Back alignment and structure |
|---|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 | Back alignment and structure |
|---|
| >3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
| >2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 90 | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 688 | ||||
| d3dwya1 | 114 | a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { | 4e-31 | |
| d1e6ia_ | 111 | a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces c | 2e-30 | |
| d3d7ca1 | 102 | a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T | 3e-30 | |
| d1eqfa1 | 139 | a.29.2.1 (A:1359-1497) TAFII250 double bromodomain | 7e-30 | |
| d1wuma1 | 118 | a.29.2.1 (A:715-832) P300/CAF histone acetyltransf | 4e-28 | |
| d1eqfa2 | 128 | a.29.2.1 (A:1498-1625) TAFII250 double bromodomain | 9e-27 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-05 |
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: CREB-binding protein, CBP species: Human (Homo sapiens) [TaxId: 9606]
Score = 115 bits (289), Expect = 4e-31
Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 205 LMKQCENLLTRLMSHQ-FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSD 263
L + L L F PVD L IPDYF ++K+PMDL TIK K+ +GQY +
Sbjct: 7 LRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQE 66
Query: 264 PLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKL 310
P + DV L F+NA YN + V+ L + FE + + L
Sbjct: 67 PWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSL 113
|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111 | Back information, alignment and structure |
|---|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
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| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
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| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
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Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 688 | |||
| d1eqfa1 | 139 | TAFII250 double bromodomain module {Human (Homo sa | 99.94 | |
| d3dwya1 | 114 | CREB-binding protein, CBP {Human (Homo sapiens) [T | 99.94 | |
| d1e6ia_ | 111 | GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.93 | |
| d1wuma1 | 118 | P300/CAF histone acetyltransferase bromodomain {Hu | 99.93 | |
| d3d7ca1 | 102 | GCN5 {Human (Homo sapiens) [TaxId: 9606]} | 99.93 | |
| d1eqfa2 | 128 | TAFII250 double bromodomain module {Human (Homo sa | 99.91 | |
| d1eqfa2 | 128 | TAFII250 double bromodomain module {Human (Homo sa | 86.87 | |
| d1eqfa1 | 139 | TAFII250 double bromodomain module {Human (Homo sa | 84.75 | |
| d3d7ca1 | 102 | GCN5 {Human (Homo sapiens) [TaxId: 9606]} | 83.97 | |
| d1wuma1 | 118 | P300/CAF histone acetyltransferase bromodomain {Hu | 82.32 | |
| d3dwya1 | 114 | CREB-binding protein, CBP {Human (Homo sapiens) [T | 82.23 |
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.9e-26 Score=185.35 Aligned_cols=106 Identities=25% Similarity=0.464 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999909988666676662344889601012699997999999717999999989999988665220119
Q 005614 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (688)
Q Consensus 203 ~~~~k~c~~IL~~L~~~k~s~~F~~PVdp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLif~NA~~YN 282 (688)
..+...|..||+.|..++.+|+|..||++. .+||||++|++||||.||++||.++.|.++.+|..||+|||.||++||
T Consensus 25 ~~l~~~l~~il~~l~~~~~s~pF~~Pvd~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 102 (139)
T d1eqfa1 25 VTLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 102 (139)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHCCCCHH--HCCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999998299765551799934--466789880773549999999974890899999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999899999999999999999999638
Q 005614 283 PPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (688)
Q Consensus 283 ~~~s~V~~~A~~L~~~Fe~~~k~i~~kl 310 (688)
++++.++.+|..|+..|++.|+++..++
T Consensus 103 ~~~s~i~~~A~~L~~~~~~~~~~~~~~~ 130 (139)
T d1eqfa1 103 GPKHSLTQISQSMLDLCDEKLKEKEDKL 130 (139)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|