Citrus Sinensis ID: 005624
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 687 | 2.2.26 [Sep-21-2011] | |||||||
| Q05001 | 714 | NADPH--cytochrome P450 re | N/A | no | 0.985 | 0.948 | 0.737 | 0.0 | |
| Q9SUM3 | 711 | NADPH--cytochrome P450 re | yes | no | 0.972 | 0.939 | 0.709 | 0.0 | |
| P37116 | 690 | NADPH--cytochrome P450 re | N/A | no | 0.931 | 0.927 | 0.677 | 0.0 | |
| Q9SB48 | 692 | NADPH--cytochrome P450 re | no | no | 0.925 | 0.919 | 0.635 | 0.0 | |
| P16435 | 677 | NADPH--cytochrome P450 re | yes | no | 0.909 | 0.923 | 0.356 | 1e-119 | |
| Q3SYT8 | 678 | NADPH--cytochrome P450 re | yes | no | 0.882 | 0.893 | 0.358 | 1e-118 | |
| P00388 | 678 | NADPH--cytochrome P450 re | yes | no | 0.892 | 0.904 | 0.366 | 1e-118 | |
| P04175 | 678 | NADPH--cytochrome P450 re | yes | no | 0.902 | 0.914 | 0.361 | 1e-118 | |
| P00389 | 679 | NADPH--cytochrome P450 re | yes | no | 0.893 | 0.904 | 0.359 | 1e-117 | |
| P37040 | 678 | NADPH--cytochrome P450 re | yes | no | 0.892 | 0.904 | 0.365 | 1e-117 |
| >sp|Q05001|NCPR_CATRO NADPH--cytochrome P450 reductase OS=Catharanthus roseus GN=CPR PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1058 bits (2735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/715 (73%), Positives = 605/715 (84%), Gaps = 38/715 (5%)
Query: 9 ESGTMKVSPFDLMSAIIRGGKVDPSNVSSSGSGVE--VASIVLDNKEFVMILTTSIAVLI 66
+S + K+SPF+LMSAI++G K+D SN S SG V V +++L+NKE VMILTTS+AVLI
Sbjct: 2 DSSSEKLSPFELMSAILKGAKLDGSNSSDSGVAVSPAVMAMLLENKELVMILTTSVAVLI 61
Query: 67 GCVVVFILRRSSSSKPKKVEPLKPLVVK---EPEVEVDDGKQKVTIFFGTQTGTAEGFAK 123
GCVVV I RRSS S K VEP K +V K EPE E+D+GK+K TIFFGTQTGTAEGFAK
Sbjct: 62 GCVVVLIWRRSSGSGKKVVEPPKLIVPKSVVEPE-EIDEGKKKFTIFFGTQTGTAEGFAK 120
Query: 124 ALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183
ALA+EA+ARY+KA+ KV+DIDDYA +++EYEEK +KE + FF LATYGDGEPTDNAARFY
Sbjct: 121 ALAEEAKARYEKAVIKVIDIDDYAADDEEYEEKFRKETLAFFILATYGDGEPTDNAARFY 180
Query: 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ 243
KWF E + G+WL+ L+YGVFGLGNRQYEHFNKIAKVVDE +A QG KR+VP+ LGDDDQ
Sbjct: 181 KWFVEGNDRGDWLKNLQYGVFGLGNRQYEHFNKIAKVVDEKVAEQGGKRIVPLVLGDDDQ 240
Query: 244 CIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSW-- 301
CIEDDF+AWRE VWPELDNLLRD+DD TTVST YTAAI EYRVVF D +D+ + E +
Sbjct: 241 CIEDDFAAWRENVWPELDNLLRDEDD-TTVSTTYTAAIPEYRVVFPDKSDSLISEANGHA 299
Query: 302 -GNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCE 360
G ANG+ VYDAQHPCRSNVAVRKELHTP+SDRSCTHL+FDIAGTGL+Y TGDHVGVYC+
Sbjct: 300 NGYANGNTVYDAQHPCRSNVAVRKELHTPASDRSCTHLDFDIAGTGLSYGTGDHVGVYCD 359
Query: 361 NLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSS 420
NLSETVEEA LL L P+TYFSLH DKEDGTPL S+LPP FPPC+LRTALT+YADLL++
Sbjct: 360 NLSETVEEAERLLNLPPETYFSLHADKEDGTPLAGSSLPPPFPPCTLRTALTRYADLLNT 419
Query: 421 PKK----------------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLG 452
PKK DEYAQ +VA+QRSLLEVM+EFPSAKPPLG
Sbjct: 420 PKKSALLALAAYASDPNEADRLKYLASPAGKDEYAQSLVANQRSLLEVMAEFPSAKPPLG 479
Query: 453 VFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPME 512
VFFAAI PRLQPR+YSISSSPR+APSRIHVTCALVYEKTP GR+HKG+CSTWMKN++P+E
Sbjct: 480 VFFAAIAPRLQPRFYSISSSPRMAPSRIHVTCALVYEKTPGGRIHKGVCSTWMKNAIPLE 539
Query: 513 KSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSL 572
+S DCSWAPIFVRQSNFKLPAD KVP+IMIGPGTGLAPFRGFLQER AL+E GAELG ++
Sbjct: 540 ESRDCSWAPIFVRQSNFKLPADPKVPVIMIGPGTGLAPFRGFLQERLALKEEGAELGTAV 599
Query: 573 LFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLS 632
FFGCRNRKMDYIYEDELN+F++ GALS+L+VAFSREGPTK+YVQHKM EK+SDIW M+S
Sbjct: 600 FFFGCRNRKMDYIYEDELNHFLEIGALSELLVAFSREGPTKQYVQHKMAEKASDIWRMIS 659
Query: 633 EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
+GAY+YVCGDAK MARDVHRTLHTI QEQGS+DS++AE VKNLQMTGRYLRDVW
Sbjct: 660 DGAYVYVCGDAKGMARDVHRTLHTIAQEQGSMDSTQAEGFVKNLQMTGRYLRDVW 714
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This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Catharanthus roseus (taxid: 4058) EC: 1EC: .EC: 6EC: .EC: 2EC: .EC: 4 |
| >sp|Q9SUM3|NCPR2_ARATH NADPH--cytochrome P450 reductase 2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1019 bits (2635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/702 (70%), Positives = 590/702 (84%), Gaps = 34/702 (4%)
Query: 18 FDLMSAIIRGGKV---DPSNVSSSGS-GVEVASIVLDNKEFVMILTTSIAVLIGCVVVFI 73
DLM+AII+G V DP+N S+ S E++S++++N++F MI+TTSIAVLIGC+V+ +
Sbjct: 12 IDLMAAIIKGEPVIVSDPANASAYESVAAELSSMLIENRQFAMIVTTSIAVLIGCIVMLV 71
Query: 74 LRRSSSSKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADEARARY 133
RRS S K+VEPLKPLV+K E E+DDG++KVTIFFGTQTGTAEGFAKAL +EA+ARY
Sbjct: 72 WRRSGSGNSKRVEPLKPLVIKPREEEIDDGRKKVTIFFGTQTGTAEGFAKALGEEAKARY 131
Query: 134 DKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGG 193
+K FK+VD+DDYA ++DEYEEKLKKE++ FFFLATYGDGEPTDNAARFYKWFTE + G
Sbjct: 132 EKTRFKIVDLDDYAADDDEYEEKLKKEDVAFFFLATYGDGEPTDNAARFYKWFTEGNDRG 191
Query: 194 EWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 253
EWL+ LKYGVFGLGNRQYEHFNK+AKVVD+IL QGA+RLV VGLGDDDQCIEDDF+AWR
Sbjct: 192 EWLKNLKYGVFGLGNRQYEHFNKVAKVVDDILVEQGAQRLVQVGLGDDDQCIEDDFTAWR 251
Query: 254 ELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQ 313
E +WPELD +LR++ D T V+TPYTAA+ EYRV +D+ DA + + N NG+ V+DAQ
Sbjct: 252 EALWPELDTILREEGD-TAVATPYTAAVLEYRVSIHDSEDAKFNDINMANGNGYTVFDAQ 310
Query: 314 HPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLL 373
HP ++NVAV++ELHTP SDRSC HLEFDIAG+GLTYETGDHVGV C+NLSETV+EAL LL
Sbjct: 311 HPYKANVAVKRELHTPESDRSCIHLEFDIAGSGLTYETGDHVGVLCDNLSETVDEALRLL 370
Query: 374 GLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK---------- 423
+SPDTYFSLH +KEDGTP+ S PP PPC+LRTALT+YA LLSSPKK
Sbjct: 371 DMSPDTYFSLHAEKEDGTPISSSLPPPF-PPCNLRTALTRYACLLSSPKKSALVALAAHA 429
Query: 424 ------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPR 465
DEY++W+V SQRSLLEVM+EFPSAKPPLGVFFA + PRLQPR
Sbjct: 430 SDPTEAERLKHLASPAGKDEYSKWVVESQRSLLEVMAEFPSAKPPLGVFFAGVAPRLQPR 489
Query: 466 YYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525
+YSISSSP++A +RIHVTCALVYEK PTGR+HKG+CSTWMKN++P EKS +CS APIFVR
Sbjct: 490 FYSISSSPKIAETRIHVTCALVYEKMPTGRIHKGVCSTWMKNAVPYEKSENCSSAPIFVR 549
Query: 526 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYI 585
QSNFKLP+D+KVPIIMIGPGTGLAPFRGFLQER AL E+G ELGPS+LFFGCRNR+MD+I
Sbjct: 550 QSNFKLPSDSKVPIIMIGPGTGLAPFRGFLQERLALVESGVELGPSVLFFGCRNRRMDFI 609
Query: 586 YEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKS 645
YE+EL FV+SGAL++L VAFSREGPTKEYVQHKMM+K+SDIWNM+S+GAYLYVCGDAK
Sbjct: 610 YEEELQRFVESGALAELSVAFSREGPTKEYVQHKMMDKASDIWNMISQGAYLYVCGDAKG 669
Query: 646 MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
MARDVHR+LHTI QEQGS+DS+KAE VKNLQ +GRYLRDVW
Sbjct: 670 MARDVHRSLHTIAQEQGSMDSTKAEGFVKNLQTSGRYLRDVW 711
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This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Reduces a variety of substrates in vitro, such as cytochrome c, feericyanide and dichloroindophenol. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P37116|NCPR_VIGRR NADPH--cytochrome P450 reductase OS=Vigna radiata var. radiata PE=1 SV=1 | Back alignment and function description |
|---|
Score = 918 bits (2373), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/682 (67%), Positives = 537/682 (78%), Gaps = 42/682 (6%)
Query: 41 GVEVASIVLDNKEFVMILTTSIAVLIGCVVVFILRRSSSSKPKKVEPLKPLVVKE----- 95
GV + V D+ ++I TTS AV++G +V L + SS + K+V KP+VV
Sbjct: 16 GVSLGDSVSDS--LLLIATTSAAVVVGLLV--FLWKKSSDRSKEV---KPVVVPRDLMME 68
Query: 96 --PEVEVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEY 153
EV+V GK KVTIFFGTQTGTAEGFAKALA+E +ARY+KA KVVD+DDYA ++D Y
Sbjct: 69 EEEEVDVAAGKTKVTIFFGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAADDDLY 128
Query: 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK-EGGEWLQKLKYGVFGLGNRQYE 212
EEKLKKE++VFF LATYGDGEP DNAARFYKWFTE K E G WLQKL YGVFGLGNRQYE
Sbjct: 129 EEKLKKESLVFFMLATYGDGEPIDNAARFYKWFTEGKDERGIWLQKLTYGVFGLGNRQYE 188
Query: 213 HFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTT 272
HFNKI KVVDE LA QGAKRLV VGLGDDDQ IEDDFSAW+E +W ELD LLRD+DD T
Sbjct: 189 HFNKIGKVVDEELAEQGAKRLVAVGLGDDDQSIEDDFSAWKESLWSELDQLLRDEDDANT 248
Query: 273 VSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSD 332
VSTPYTAAI EYRVV +D AS + ANG+ +D HPCR NVAV+KELH P SD
Sbjct: 249 VSTPYTAAILEYRVVIHDPTAASTYDNHSTVANGNTEFDIHHPCRVNVAVQKELHKPESD 308
Query: 333 RSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTP 392
RSC HLEFDI+GT +TY+TGDHVGVY EN +ETVEE LLG + D +FSLHTDK+DGT
Sbjct: 309 RSCIHLEFDISGTSITYDTGDHVGVYAENCNETVEETGKLLGQNLDLFFSLHTDKDDGTS 368
Query: 393 LGKSTLPPTFPPCSLRTALTKYADLLSSPKK---------------------------DE 425
LG S LPP PCSLRTAL +YADLL+ P+K DE
Sbjct: 369 LGGSLLPPFPGPCSLRTALARYADLLNPPRKAALLALATHASEPSDERLKFLSSPQGKDE 428
Query: 426 YAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCA 485
Y++W+V SQRSL+EVM+EFPSAKPPLGVFFAAI PRLQPRYYSISSSPR AP R+HVTCA
Sbjct: 429 YSKWVVGSQRSLVEVMAEFPSAKPPLGVFFAAIAPRLQPRYYSISSSPRFAPQRVHVTCA 488
Query: 486 LVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPG 545
LVY TPTGR+HKG+CSTWMKN++P EKS DCS APIF+R SNFKLP D +PIIM+GPG
Sbjct: 489 LVYGPTPTGRIHKGVCSTWMKNAIPSEKSQDCSSAPIFIRPSNFKLPVDHSIPIIMVGPG 548
Query: 546 TGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 605
TGLAPFRGFLQER+AL+E G +LGP+LLFFGCRNR+MD+IYEDEL +FV+ G+LS+LIVA
Sbjct: 549 TGLAPFRGFLQERYALKEDGVQLGPALLFFGCRNRQMDFIYEDELKSFVEQGSLSELIVA 608
Query: 606 FSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLD 665
FSREG KEYVQHKMM+K++ +W+++S+G YLYVCGDAK MARDVHRTLH+IVQEQ ++D
Sbjct: 609 FSREGAEKEYVQHKMMDKAAHLWSLISQGGYLYVCGDAKGMARDVHRTLHSIVQEQENVD 668
Query: 666 SSKAESMVKNLQMTGRYLRDVW 687
S+KAE++VK LQM GRYLRDVW
Sbjct: 669 STKAEAIVKKLQMDGRYLRDVW 690
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This enzyme is required for electron transfer from NADP to cytochrome P450. Vigna radiata var. radiata (taxid: 3916) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q9SB48|NCPR1_ARATH NADPH--cytochrome P450 reductase 1 OS=Arabidopsis thaliana GN=ATR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 861 bits (2225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/673 (63%), Positives = 520/673 (77%), Gaps = 37/673 (5%)
Query: 49 LDNKEFVMILTTSIAVLIGCVVVFILRRSSSSKPKKVEPL---KPLVVKEPEVEVD--DG 103
L + ++I TTS+A++ G VV + +++++ + +++PL K L+ K+ + ++D G
Sbjct: 23 LSDDVVLVIATTSLALVAG-FVVLLWKKTTADRSGELKPLMIPKSLMAKDEDDDLDLGSG 81
Query: 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIV 163
K +V+IFFGTQTGTAEGFAKAL++E +ARY+KA KV+D+DDYA ++D+YEEKLKKE +
Sbjct: 82 KTRVSIFFGTQTGTAEGFAKALSEEIKARYEKAAVKVIDLDDYAADDDQYEEKLKKETLA 141
Query: 164 FFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDE 223
FF +ATYGDGEPTDNAARFYKWFTE+ E LQ+L YGVF LGNRQYEHFNKI V+DE
Sbjct: 142 FFCVATYGDGEPTDNAARFYKWFTEENERDIKLQQLAYGVFALGNRQYEHFNKIGIVLDE 201
Query: 224 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISE 283
L +GAKRL+ VGLGDDDQ IEDDF+AW+E +W ELD LL+D+DD +V+TPYTA I E
Sbjct: 202 ELCKKGAKRLIEVGLGDDDQSIEDDFNAWKESLWSELDKLLKDEDD-KSVATPYTAVIPE 260
Query: 284 YRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIA 343
YRVV +D + ANG+ D HPCR +VAV+KELHT SDRSC HLEFDI+
Sbjct: 261 YRVVTHDPRFTTQKSMESNVANGNTTIDIHHPCRVDVAVQKELHTHESDRSCIHLEFDIS 320
Query: 344 GTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP 403
TG+TYETGDHVGVY EN E VEEA LLG S D FS+H DKEDG+PL +S +PP FP
Sbjct: 321 RTGITYETGDHVGVYAENHVEIVEEAGKLLGHSLDLVFSIHADKEDGSPL-ESAVPPPFP 379
Query: 404 -PCSLRTALTKYADLLSSPKK----------------------------DEYAQWIVASQ 434
PC+L T L +YADLL+ P+K DEY+QWIVASQ
Sbjct: 380 GPCTLGTGLARYADLLNPPRKSALVALAAYATEPSEAEKLKHLTSPDGKDEYSQWIVASQ 439
Query: 435 RSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG 494
RSLLEVM+ FPSAKPPLGVFFAAI PRLQPRYYSISSSPR+APSR+HVT ALVY TPTG
Sbjct: 440 RSLLEVMAAFPSAKPPLGVFFAAIAPRLQPRYYSISSSPRLAPSRVHVTSALVYGPTPTG 499
Query: 495 RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGF 554
R+HKG+CSTWMKN++P EKS++CS APIF+R SNFKLP++ PI+M+GPGTGLAPFRGF
Sbjct: 500 RIHKGVCSTWMKNAVPAEKSHECSGAPIFIRASNFKLPSNPSTPIVMVGPGTGLAPFRGF 559
Query: 555 LQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKE 614
LQER AL+E G ELG SLLFFGCRNR+MD+IYEDELNNFV G +S+LI+AFSREG KE
Sbjct: 560 LQERMALKEDGEELGSSLLFFGCRNRQMDFIYEDELNNFVDQGVISELIMAFSREGAQKE 619
Query: 615 YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVK 674
YVQHKMMEK++ +W+++ E YLYVCGDAK MARDVHRTLHTIVQEQ + SS+AE++VK
Sbjct: 620 YVQHKMMEKAAQVWDLIKEEGYLYVCGDAKGMARDVHRTLHTIVQEQEGVSSSEAEAIVK 679
Query: 675 NLQMTGRYLRDVW 687
LQ GRYLRDVW
Sbjct: 680 KLQTEGRYLRDVW 692
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Reduces a variety of substrates in vitro, such as cytochrome c, feericyanide and dichloroindophenol. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P16435|NCPR_HUMAN NADPH--cytochrome P450 reductase OS=Homo sapiens GN=POR PE=1 SV=2 | Back alignment and function description |
|---|
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 251/704 (35%), Positives = 384/704 (54%), Gaps = 79/704 (11%)
Query: 30 VDPSNVSSSGSGVEVASIVLDNKEFVMILTTSIAVLIGCVVVFILRRSSSSKPKKVEPLK 89
VD S+ S EV+ + + MIL + I L+ +F ++ + K++ L
Sbjct: 6 VDTSSTVSEAVAEEVSLFSMTD----MILFSLIVGLLTYWFLFRKKKEEVPEFTKIQTLT 61
Query: 90 PLVVKEPEVE-VDDGKQKVTIFFGTQTGTAEGFAKALADEARARY-------DKAIFKVV 141
V + VE + + + +F+G+QTGTAE FA L+ +A RY D + +
Sbjct: 62 SSVRESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAH-RYGMRGMSADPEEYDLA 120
Query: 142 DIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKY 201
D+ + ++ +V F +ATYG+G+PTDNA FY W E L +K+
Sbjct: 121 DLSSLPEIDNA---------LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LSGVKF 168
Query: 202 GVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 261
VFGLGN+ YEHFN + K VD+ L GA+R+ +GLGDDD +E+DF WRE WP +
Sbjct: 169 AVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVC 228
Query: 262 NLLRDDDDPTTVSTPYTAAISEYRVVFYDNADAS---VGE----KSWGNANGHAVYDAQH 314
+T ++I +Y +V + + DA+ +GE KS+ N +DA++
Sbjct: 229 EHF------GVEATGEESSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQK--PPFDAKN 280
Query: 315 PCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLG 374
P + V ++L+ ++R HLE DI+ + + YE+GDHV VY N S V + +LG
Sbjct: 281 PFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILG 339
Query: 375 LSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPK----------- 422
D SL+ E+ S FP P S RTALT Y D+ + P+
Sbjct: 340 ADLDVVMSLNNLDEE------SNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYA 393
Query: 423 -------------------KDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQ 463
K+ Y W+V ++R +L ++ + PS +PP+ ++PRLQ
Sbjct: 394 SEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPID-HLCELLPRLQ 452
Query: 464 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 523
RYYSI+SS +V P+ +H+ +V +T GR++KG+ + W++ P ++ + P+F
Sbjct: 453 ARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPAGENGGRALVPMF 512
Query: 524 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMD 583
VR+S F+LP A P+IM+GPGTG+APF GF+QER L++ G E+G +LL++GCR D
Sbjct: 513 VRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDED 572
Query: 584 YIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDA 643
Y+Y +EL F + GAL+QL VAFSRE K YVQH + + +W ++ GA++YVCGDA
Sbjct: 573 YLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDA 632
Query: 644 KSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
++MARDV T + IV E G+++ ++A +K L GRY DVW
Sbjct: 633 RNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 676
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q3SYT8|NCPR_BOVIN NADPH--cytochrome P450 reductase OS=Bos taurus GN=POR PE=2 SV=3 | Back alignment and function description |
|---|
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 247/689 (35%), Positives = 378/689 (54%), Gaps = 83/689 (12%)
Query: 53 EFVMILTTSIAVLIGCVV-----VFILRRSSSSKPK--KVEPLKPLVVKEPEVE-VDDGK 104
E V + +T+ +L +V F+ R+ P+ K++ V VE +
Sbjct: 18 EEVSLFSTTDVILFSLIVGVMTYWFLFRKKKEEVPEFTKIQTTTSSVKDRSFVEKMKKTG 77
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARY-------DKAIFKVVDIDDYADEEDEYEEKL 157
+ + +F+G+QTGTAE FA L+ +A RY D + + D+ + E
Sbjct: 78 RNIIVFYGSQTGTAEEFANRLSKDAH-RYGMRGMAADPEEYDLADLSSLPEIE------- 129
Query: 158 KKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKI 217
+ + F +ATYG+G+PTDNA FY W E L +KY VF LGN+ YEHFN +
Sbjct: 130 --KALAIFCMATYGEGDPTDNAQDFYDWLQETDVD---LSGVKYAVFALGNKTYEHFNAM 184
Query: 218 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPY 277
K VD+ L GA+R+ +GLGDDD +E+DF WRE WP + +T
Sbjct: 185 GKYVDKRLEQLGAQRIFDLGLGDDDGNLEEDFITWREQFWPAVCEHF------GVEATGE 238
Query: 278 TAAISEYRVVFYDNADAS---VGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPS 330
++I +Y ++ + + D + GE KS+ N +DA++P + V ++L+
Sbjct: 239 ESSIRQYELMVHTDMDMAKVYTGEMGRLKSYENQK--PPFDAKNPFLAVVTTNRKLNQ-G 295
Query: 331 SDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDG 390
++R HLE DI+ + + YE+GDHV VY N S V + +LG D SL+ E+
Sbjct: 296 TERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGEILGADLDIIMSLNNLDEE- 354
Query: 391 TPLGKSTLPPTFP-PCSLRTALTKYADLLSSPK--------------------------- 422
S FP P S RTALT Y D+ + P+
Sbjct: 355 -----SNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPTEHEQLRKMASSS 409
Query: 423 ---KDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSR 479
K+ Y +W++ ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+
Sbjct: 410 GEGKELYLRWVLEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNS 468
Query: 480 IHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPI 539
+H+ V +T TGR++KG+ ++W++ P ++ + P++VR+S F+LP A P+
Sbjct: 469 VHICAVAVEYETKTGRINKGVATSWLRAKEPAGENGGRALVPMYVRKSQFRLPFKATTPV 528
Query: 540 IMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 599
IM+GPGTG+APF GF+QER L++ G E+G +LL++GCR DY+Y +EL F + GAL
Sbjct: 529 IMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAGFHKDGAL 588
Query: 600 SQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIV 658
+QL VAFSRE P K YVQH + + +W ++ E GA++YVCGDA++MARDV T + IV
Sbjct: 589 TQLNVAFSREQPQKVYVQHLLKKDKEHLWKLIHEGGAHIYVCGDARNMARDVQNTFYDIV 648
Query: 659 QEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
EQG+++ ++A VK L GRY DVW
Sbjct: 649 AEQGAMEHAQAVDYVKKLMTKGRYSLDVW 677
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P00388|NCPR_RAT NADPH--cytochrome P450 reductase OS=Rattus norvegicus GN=Por PE=1 SV=3 | Back alignment and function description |
|---|
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 250/682 (36%), Positives = 377/682 (55%), Gaps = 69/682 (10%)
Query: 53 EFVMILTTSIAVLIGCVV-----VFILRRSSSSKPK--KVEPLKPLVVKEPEVE-VDDGK 104
E V + +T+ VL +V FI R+ P+ K++ P V + VE +
Sbjct: 18 EEVSLFSTTDMVLFSLIVGVLTYWFIFRKKKEEIPEFSKIQTTAPPVKESSFVEKMKKTG 77
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVF 164
+ + +F+G+QTGTAE FA L+ +A RY D ++Y D D +++V
Sbjct: 78 RNIIVFYGSQTGTAEEFANRLSKDAH-RYGMRGMSA-DPEEY-DLADLSSLPEIDKSLVV 134
Query: 165 FFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEI 224
F +ATYG+G+PTDNA FY W E L +K+ VFGLGN+ YEHFN + K VD+
Sbjct: 135 FCMATYGEGDPTDNAQDFYDWLQETDVD---LTGVKFAVFGLGNKTYEHFNAMGKYVDQR 191
Query: 225 LANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEY 284
L GA+R+ +GLGDDD +E+DF WRE WP + +T ++I +Y
Sbjct: 192 LEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFF------GVEATGEESSIRQY 245
Query: 285 RVVFYDNADAS---VGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTH 337
+V +++ D + GE KS+ N +DA++P + V ++L+ ++R H
Sbjct: 246 ELVVHEDMDVAKVYTGEMGRLKSYENQK--PPFDAKNPFLAAVTANRKLNQ-GTERHLMH 302
Query: 338 LEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKST 397
LE DI+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 303 LELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEE------SN 356
Query: 398 LPPTFP-PCSLRTALTKYADLLSSPK------------------------------KDEY 426
FP P + RTALT Y D+ + P+ K+ Y
Sbjct: 357 KKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELY 416
Query: 427 AQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCAL 486
W+V ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+
Sbjct: 417 LSWVVEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVA 475
Query: 487 VYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGT 546
V + +GRV+KG+ ++W++ P ++ + P+FVR+S F+LP + P+IM+GPGT
Sbjct: 476 VEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGPGT 535
Query: 547 GLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606
G+APF GF+QER L+E G E+G +LL++GCR DY+Y +EL F + GAL+QL VAF
Sbjct: 536 GIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAF 595
Query: 607 SREGPTKEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLD 665
SRE K YVQH + +W ++ E GA++YVCGDA++MA+DV T + IV E G ++
Sbjct: 596 SREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPME 655
Query: 666 SSKAESMVKNLQMTGRYLRDVW 687
++A VK L GRY DVW
Sbjct: 656 HTQAVDYVKKLMTKGRYSLDVW 677
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P04175|NCPR_PIG NADPH--cytochrome P450 reductase OS=Sus scrofa GN=POR PE=1 SV=2 | Back alignment and function description |
|---|
Score = 424 bits (1091), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/709 (36%), Positives = 382/709 (53%), Gaps = 89/709 (12%)
Query: 33 SNVSSSGSGVEVASIVLDNKEFVMILTTSIAVLIGCVV-----VFILRRSSSSKPK--KV 85
SNV + + E+ + E V + + + VL +V FI R+ P+ K+
Sbjct: 4 SNVDTGTTTSEMVA------EEVSLFSATDMVLFSLIVGLLTYWFIFRKKKDEVPEFSKI 57
Query: 86 EPLKPLVVKEPEVE-VDDGKQKVTIFFGTQTGTAEGFAKALADEARARY-------DKAI 137
E V VE + + + +F+G+QTGTAE FA L+ +A RY D
Sbjct: 58 ETTTSSVKDSSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAH-RYGMRGMAADPEE 116
Query: 138 FKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQ 197
+ + D+ + E+ + F +ATYG+G+PTDNA FY W E L
Sbjct: 117 YDLSDLSSLPEIENA---------LAVFCMATYGEGDPTDNAQDFYDWLQEADVD---LT 164
Query: 198 KLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVW 257
+KY VFGLGN+ YEHFN + K VD+ L GA+R+ +GLGDDD +E+DF WRE W
Sbjct: 165 GVKYAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFDLGLGDDDGNLEEDFITWREQFW 224
Query: 258 PELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASV---GE----KSWGNANGHAVY 310
P + +T ++I +Y +V + + D +V GE KS+ N +
Sbjct: 225 PAVCEHF------GVEATGEESSIRQYELVVHTDMDTAVVYTGEMGRLKSYENQK--PPF 276
Query: 311 DAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEAL 370
DA++P + V ++L+ ++R HLE DI+ + + YE+GDHV VY N S V +
Sbjct: 277 DAKNPFLAVVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLG 335
Query: 371 SLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPK------- 422
+LG D SL+ E+ S FP P + RTALT Y D+ + P+
Sbjct: 336 EILGTDLDIVMSLNNLDEE------SNKRHPFPCPTTYRTALTYYLDITNPPRTNVLYEL 389
Query: 423 -----------------------KDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIV 459
K+ Y W+V ++R +L ++ ++PS +PP+ +
Sbjct: 390 AQYASEPSEQEQLRKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPID-HLCERL 448
Query: 460 PRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSW 519
PRLQ RYYSI+SS +V P+ +H+ +V +T +GRV+KG+ ++W++ P ++ +
Sbjct: 449 PRLQARYYSIASSSKVHPNSVHICAVVVEYETKSGRVNKGVATSWLRAKEPAGENGRRAL 508
Query: 520 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRN 579
P+FVR+S F+LP A P+IM+GPGTG+APF GF+QER LQE G E+G +LL++GCR
Sbjct: 509 VPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLQEQGKEVGETLLYYGCRR 568
Query: 580 RKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSE-GAYLY 638
DY+Y +EL F GAL++L VAFSRE P K YVQH + +W ++ + GA++Y
Sbjct: 569 SDEDYLYREELAQFHAKGALTRLSVAFSREQPQKVYVQHLLKRDKEHLWKLIHDGGAHIY 628
Query: 639 VCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
+CGDA++MARDV T IV EQG ++ ++A VK L GRY DVW
Sbjct: 629 ICGDARNMARDVQNTFCDIVAEQGPMEHAQAVDYVKKLMTKGRYSLDVW 677
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Sus scrofa (taxid: 9823) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P00389|NCPR_RABIT NADPH--cytochrome P450 reductase OS=Oryctolagus cuniculus GN=POR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/676 (35%), Positives = 368/676 (54%), Gaps = 62/676 (9%)
Query: 54 FVMILTTSIAVLIGCVVV-FILRRSSSSKPK--KVEPLKPLVVKEPEV--EVDDGKQKVT 108
F M ++++G + F+ R+ P+ K++ VKE ++ + +
Sbjct: 23 FSMTDVVLFSLIVGLITYWFLFRKKKEEVPEFTKIQAPTSSSVKESSFVEKMKKTGRNIV 82
Query: 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLA 168
+F+G+QTGTAE FA L+ +A + + D ++Y D D + F +A
Sbjct: 83 VFYGSQTGTAEEFANRLSKDAHRYGMRGM--AADPEEY-DLADLSSLPEINNALAVFCMA 139
Query: 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQ 228
TYG+G+PTDNA FY W E L +KY VFGLGN+ YEHFN + K VD+ L
Sbjct: 140 TYGEGDPTDNAQDFYDWLQETDVD---LSGVKYAVFGLGNKTYEHFNAMGKYVDQRLEQL 196
Query: 229 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 288
GA+R+ +G+GDDD +E+DF WRE WP + +T ++I +Y +V
Sbjct: 197 GAQRIFELGMGDDDANLEEDFITWREQFWPAVCEHF------GVEATGEESSIRQYELVL 250
Query: 289 YDNAD-ASVGEKSWGN----ANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIA 343
+ + D A V + G N +DA++P + V ++L+ ++R HLE DI+
Sbjct: 251 HTDIDVAKVYQGEMGRLKSYENQKPPFDAKNPFLATVTTNRKLNQ-GTERHLMHLELDIS 309
Query: 344 GTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP 403
+ + YE+GDHV VY N S V + +LG D SL+ E+ S FP
Sbjct: 310 DSKIRYESGDHVAVYPANDSALVNQLGEILGADLDVVMSLNNLDEE------SNKKHPFP 363
Query: 404 -PCSLRTALTKYADLLSSPK------------------------------KDEYAQWIVA 432
P S RTALT Y D+ + P+ K+ Y W+V
Sbjct: 364 CPTSYRTALTYYLDITNPPRTNVLYELAQYAADPAEQEQLRKMASSSGEGKELYLSWVVE 423
Query: 433 SQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTP 492
++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ V +T
Sbjct: 424 ARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYETK 482
Query: 493 TGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFR 552
GR++KG+ ++W++ P ++ + P+FVR+S F+LP A P+IM+GPGTG+APF
Sbjct: 483 AGRLNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFI 542
Query: 553 GFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT 612
GF+QER L++ G E+G +LL++GCR DY+Y +EL F + G LSQL VAFSRE
Sbjct: 543 GFIQERAWLRQQGKEVGETLLYYGCRRAAEDYLYREELAGFQKDGTLSQLNVAFSREQAQ 602
Query: 613 KEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAES 671
K YVQH + +W ++ E GA++YVCGDA++MARDV T + IV E G+++ ++A
Sbjct: 603 KVYVQHLLRRDKEHLWRLIHEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVD 662
Query: 672 MVKNLQMTGRYLRDVW 687
VK L GRY DVW
Sbjct: 663 YVKKLMTKGRYSLDVW 678
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Oryctolagus cuniculus (taxid: 9986) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P37040|NCPR_MOUSE NADPH--cytochrome P450 reductase OS=Mus musculus GN=Por PE=1 SV=2 | Back alignment and function description |
|---|
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 249/682 (36%), Positives = 376/682 (55%), Gaps = 69/682 (10%)
Query: 53 EFVMILTTSIAVLIGCVV-----VFILRRSSSSKPK--KVEPLKPLVVKEPEVE-VDDGK 104
E V + +T+ VL +V FI ++ P+ K++ P V + VE +
Sbjct: 18 EEVSLFSTTDIVLFSLIVGVLTYWFIFKKKKEEIPEFSKIQTTAPPVKESSFVEKMKKTG 77
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVF 164
+ + +F+G+QTGTAE FA L+ +A RY D ++Y D D +++V
Sbjct: 78 RNIIVFYGSQTGTAEEFANRLSKDAH-RYGMRGMSA-DPEEY-DLADLSSLPEIDKSLVV 134
Query: 165 FFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEI 224
F +ATYG+G+PTDNA FY W E L +K+ VFGLGN+ YEHFN + K VD+
Sbjct: 135 FCMATYGEGDPTDNAQDFYDWLQETDVD---LTGVKFAVFGLGNKTYEHFNAMGKYVDQR 191
Query: 225 LANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEY 284
L GA+R+ +GLGDDD +E+DF WRE WP + +T ++I +Y
Sbjct: 192 LEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFF------GVEATGEESSIRQY 245
Query: 285 RVVFYDNADAS---VGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTH 337
+V +++ D + GE KS+ N +DA++P + V ++L+ ++R H
Sbjct: 246 ELVVHEDMDTAKVYTGEMGRLKSYENQK--PPFDAKNPFLAAVTTNRKLNQ-GTERHLMH 302
Query: 338 LEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKST 397
LE DI+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 303 LELDISDSKIRYESGDHVAVYPANDSTLVNQIGEILGADLDVIMSLNNLDEE------SN 356
Query: 398 LPPTFP-PCSLRTALTKYADLLSSPK------------------------------KDEY 426
FP P + RTALT Y D+ + P+ K+ Y
Sbjct: 357 KKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELY 416
Query: 427 AQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCAL 486
W+V ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+
Sbjct: 417 LSWVVEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVA 475
Query: 487 VYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGT 546
V + +GRV+KG+ ++W++ P ++ + P+FVR+S F+LP P+IM+GPGT
Sbjct: 476 VEYEAKSGRVNKGVATSWLRTKEPAGENGRRALVPMFVRKSQFRLPFKPTTPVIMVGPGT 535
Query: 547 GLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606
G+APF GF+QER L+E G E+G +LL++GCR DY+Y +EL F + GAL+QL VAF
Sbjct: 536 GVAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAF 595
Query: 607 SREGPTKEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLD 665
SRE K YVQH + +W ++ E GA++YVCGDA++MA+DV T + IV E G ++
Sbjct: 596 SREQAHKVYVQHLLKRDKEHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPME 655
Query: 666 SSKAESMVKNLQMTGRYLRDVW 687
++A VK L GRY DVW
Sbjct: 656 HTQAVDYVKKLMTKGRYSLDVW 677
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 687 | ||||||
| 224551852 | 710 | NADPH:cytochrome P450 reductase [Gossypi | 0.973 | 0.942 | 0.781 | 0.0 | |
| 359485011 | 705 | PREDICTED: NADPH--cytochrome P450 reduct | 0.983 | 0.958 | 0.783 | 0.0 | |
| 449457161 | 708 | PREDICTED: NADPH--cytochrome P450 reduct | 0.986 | 0.957 | 0.758 | 0.0 | |
| 449461207 | 708 | PREDICTED: NADPH--cytochrome P450 reduct | 0.985 | 0.956 | 0.775 | 0.0 | |
| 449522700 | 708 | PREDICTED: NADPH--cytochrome P450 reduct | 0.985 | 0.956 | 0.773 | 0.0 | |
| 255587986 | 694 | cytochrome P450, putative [Ricinus commu | 0.963 | 0.953 | 0.772 | 0.0 | |
| 197209812 | 706 | cytochrome P450 reductase [Lotus japonic | 0.979 | 0.953 | 0.756 | 0.0 | |
| 297735398 | 660 | unnamed protein product [Vitis vinifera] | 0.919 | 0.957 | 0.798 | 0.0 | |
| 13183566 | 712 | NADPH-cytochrome P450 oxydoreductase iso | 0.981 | 0.946 | 0.763 | 0.0 | |
| 356562353 | 707 | PREDICTED: NADPH--cytochrome P450 reduct | 0.983 | 0.956 | 0.748 | 0.0 |
| >gi|224551852|gb|ACN54324.1| NADPH:cytochrome P450 reductase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 1171 bits (3029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/701 (78%), Positives = 619/701 (88%), Gaps = 32/701 (4%)
Query: 16 SPFDLMSAIIRGGKVDPSNVSSSGSGVEVASIVLDNKEFVMILTTSIAVLIGCVVVFILR 75
SP DLMSA+++ K+DPSN +SS S +V +++ +N+EFVMILTTSIAVLIGCVV+ I R
Sbjct: 13 SPLDLMSALVKA-KMDPSN-ASSDSAAQVTTVLFENREFVMILTTSIAVLIGCVVILIWR 70
Query: 76 RSSSSKPKKVE-PLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYD 134
RS+S KPK+++ PLKP ++KEPE+EVDDGK+KVTI FGTQTGTAEGFAKAL +EA+ARY+
Sbjct: 71 RSASQKPKQIQLPLKPSIIKEPELEVDDGKKKVTILFGTQTGTAEGFAKALVEEAKARYE 130
Query: 135 KAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGE 194
KA F +VD+DDYA +++EYEEK+KK+N+ FFFLATYGDGEPTDNAARFYKWFTE KE GE
Sbjct: 131 KATFNIVDLDDYAADDEEYEEKMKKDNLAFFFLATYGDGEPTDNAARFYKWFTEGKERGE 190
Query: 195 WLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRE 254
WLQ +KYG+FGLGN+QYEHFNK+AKVVDE+L QGAKR+VP+GLGDDDQCIEDDF+AWRE
Sbjct: 191 WLQNMKYGIFGLGNKQYEHFNKVAKVVDELLTEQGAKRIVPLGLGDDDQCIEDDFTAWRE 250
Query: 255 LVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQH 314
LVWPELD LLRD+DD TVSTPYTAA+ EYRVVFYD ADA + +K+W NANGHA YDAQH
Sbjct: 251 LVWPELDQLLRDEDD-ATVSTPYTAAVLEYRVVFYDPADAPLEDKNWSNANGHATYDAQH 309
Query: 315 PCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLG 374
PCRSNVAVRKELH P SDRSCTHLEFDIAGTGL+YETGDHVGVYCENL E V+EALSLLG
Sbjct: 310 PCRSNVAVRKELHAPESDRSCTHLEFDIAGTGLSYETGDHVGVYCENLDEVVDEALSLLG 369
Query: 375 LSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK----------- 423
LSPDTYFS+HTDKEDGTPLG S+LP +FPPC+LRTAL +YADLLSSPKK
Sbjct: 370 LSPDTYFSVHTDKEDGTPLGGSSLPSSFPPCTLRTALARYADLLSSPKKAALLALAAHAS 429
Query: 424 -----------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRY 466
DEYAQWIVA+QRSLLEVM+EFPSAKPPLGVFFAA+ PRLQPRY
Sbjct: 430 DPTEADRLRHLASPAGKDEYAQWIVANQRSLLEVMAEFPSAKPPLGVFFAAVAPRLQPRY 489
Query: 467 YSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 526
YSISSSPR+APSRIHVTCALVYEKTPTGR+HKG+CSTWMKN++ KS+DC WAPIFVRQ
Sbjct: 490 YSISSSPRLAPSRIHVTCALVYEKTPTGRIHKGVCSTWMKNAVSSGKSDDCGWAPIFVRQ 549
Query: 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIY 586
SNFKLP+D KVPIIMIGPGTGLAPFRGFLQER AL+EAGAELGPS+LFFGCRNRKMD+IY
Sbjct: 550 SNFKLPSDTKVPIIMIGPGTGLAPFRGFLQERLALKEAGAELGPSVLFFGCRNRKMDFIY 609
Query: 587 EDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSM 646
EDELNNFV SGALS+L+VAFSREGPTKEYVQHKMMEK+ DIW+M+S+G YLYVCGDAK M
Sbjct: 610 EDELNNFVNSGALSELVVAFSREGPTKEYVQHKMMEKAKDIWDMISQGGYLYVCGDAKGM 669
Query: 647 ARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
ARDVHR LHTI QEQGSLDSSKAESMVKNLQM+GRYLRDVW
Sbjct: 670 ARDVHRALHTIFQEQGSLDSSKAESMVKNLQMSGRYLRDVW 710
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485011|ref|XP_002270732.2| PREDICTED: NADPH--cytochrome P450 reductase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1137 bits (2941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/707 (78%), Positives = 620/707 (87%), Gaps = 31/707 (4%)
Query: 9 ESGTMKVSPFDLMSAIIRGGKVDPSNVSSSGSGVEVASIVLDNKEFVMILTTSIAVLIGC 68
+S ++KVSPFDLMSAII+G +D SNVSS G A++VL+N+EF+MILTTSIAVLIGC
Sbjct: 2 QSSSVKVSPFDLMSAIIKG-SMDQSNVSSESGGA--AAMVLENREFIMILTTSIAVLIGC 58
Query: 69 VVVFILRRSSSSKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADE 128
VVV I RRS + K EP KPL+VK+ EVEVDDGKQKVTIFFGTQTGTAEGFAKALA+E
Sbjct: 59 VVVLIWRRSGQKQSKTPEPPKPLIVKDLEVEVDDGKQKVTIFFGTQTGTAEGFAKALAEE 118
Query: 129 ARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188
A+ARY+KAIFKVVD+DDYA ++DEYEEKLKKE + FFFLATYGDGEPTDNAARFYKWF E
Sbjct: 119 AKARYEKAIFKVVDLDDYAGDDDEYEEKLKKETLAFFFLATYGDGEPTDNAARFYKWFAE 178
Query: 189 QKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDD 248
KE GEWLQ LKYGVFGLGNRQYEHFNK+AKVVD+I+ QG KR+VPVGLGDDDQCIEDD
Sbjct: 179 GKERGEWLQNLKYGVFGLGNRQYEHFNKVAKVVDDIITEQGGKRIVPVGLGDDDQCIEDD 238
Query: 249 FSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHA 308
F+AWREL+WPELD LLRD+DD TTVSTPYTAA+ EYRVVF+D AS+ +KSWG+ANGH
Sbjct: 239 FAAWRELLWPELDQLLRDEDDATTVSTPYTAAVLEYRVVFHDPEGASLQDKSWGSANGHT 298
Query: 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEE 368
V+DAQHPCR+NVAVRKELHTP+SDRSCTHLEFDI+GTGLTYETGDHVGVYCENL ETVEE
Sbjct: 299 VHDAQHPCRANVAVRKELHTPASDRSCTHLEFDISGTGLTYETGDHVGVYCENLPETVEE 358
Query: 369 ALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK----- 423
A LLG SPD YFS+HT++EDGTPL S+L P FPPC+LRTALT+YAD+LSSPKK
Sbjct: 359 AERLLGFSPDVYFSIHTEREDGTPLSGSSLSPPFPPCTLRTALTRYADVLSSPKKSALVA 418
Query: 424 -----------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVP 460
DEYAQW+VASQRSLLE+M+EFPSAKPPLGVFFAA+ P
Sbjct: 419 LAAHASDPSEADRLKYLASPSGKDEYAQWVVASQRSLLEIMAEFPSAKPPLGVFFAAVAP 478
Query: 461 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 520
RLQPRYYSISSSP++ PSRIHVTCALV +K PTGR+HKG+CSTWMK ++P+E+S DCSWA
Sbjct: 479 RLQPRYYSISSSPKMVPSRIHVTCALVCDKMPTGRIHKGICSTWMKYAVPLEESQDCSWA 538
Query: 521 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 580
PIFVRQSNFKLPAD VPIIMIGPGTGLAPFRGFLQERFAL+EAGAELG S+LFFGCRNR
Sbjct: 539 PIFVRQSNFKLPADTSVPIIMIGPGTGLAPFRGFLQERFALKEAGAELGSSILFFGCRNR 598
Query: 581 KMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVC 640
KMDYIYEDELN FV+SGALS+LIVAFSREGPTKEYVQHKMMEK+SDIWN++S+G Y+YVC
Sbjct: 599 KMDYIYEDELNGFVESGALSELIVAFSREGPTKEYVQHKMMEKASDIWNVISQGGYIYVC 658
Query: 641 GDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
GDAK MARDVHRTLHTI+QEQGSLDSSKAESMVKNLQMTGRYLRDVW
Sbjct: 659 GDAKGMARDVHRTLHTILQEQGSLDSSKAESMVKNLQMTGRYLRDVW 705
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457161|ref|XP_004146317.1| PREDICTED: NADPH--cytochrome P450 reductase 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1135 bits (2936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/708 (75%), Positives = 611/708 (86%), Gaps = 30/708 (4%)
Query: 8 SESGTMKVSPFDLMSAIIRGGKVDPSNVSSSGSGVEVASIVLDNKEFVMILTTSIAVLIG 67
SES +MK SPFD MSAII+G ++DPSN S +G E AS++ +N+E V ILTTSIAV+IG
Sbjct: 3 SESSSMKASPFDFMSAIIKG-RMDPSNSSFQSTG-EGASVIFENRELVAILTTSIAVMIG 60
Query: 68 CVVVFILRRSSSSKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALAD 127
C VV + RRS + K K +E KPL+ KEPE EVDDGK+KVTIFFGTQTGTAEGFAKAL+D
Sbjct: 61 CFVVLVWRRSGNRKVKTIELPKPLLGKEPEPEVDDGKKKVTIFFGTQTGTAEGFAKALSD 120
Query: 128 EARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187
EA+ARYDKA F+VVD+DDY +EDEYE+KLKKE++ FFLATYGDGEPTDNAARFYKWFT
Sbjct: 121 EAKARYDKAKFRVVDLDDYGADEDEYEQKLKKESVAVFFLATYGDGEPTDNAARFYKWFT 180
Query: 188 EQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIED 247
E KE GE LQ L Y VFGLGNRQYEHFNKIAKVVDE+L QG KRLV VGLGDDDQCIED
Sbjct: 181 EGKERGECLQNLNYAVFGLGNRQYEHFNKIAKVVDELLETQGGKRLVKVGLGDDDQCIED 240
Query: 248 DFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGH 307
DFSAWRE +WPELD LLRD+DD TV+TPYTAAISEYRVVF+D +D + +K+W NANGH
Sbjct: 241 DFSAWRESLWPELDQLLRDEDDAATVTTPYTAAISEYRVVFHDPSDVTDDKKNWMNANGH 300
Query: 308 AVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVE 367
AV+DAQHP RSNV VRKELHTP+SDRSCTHLEFDI+ + L YETGDHVGVYCENL+ETV+
Sbjct: 301 AVHDAQHPFRSNVVVRKELHTPASDRSCTHLEFDISESALKYETGDHVGVYCENLTETVD 360
Query: 368 EALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK---- 423
EAL+LLGLSP+TYFS+HTD EDGT LG S+LPP FP C+LRTALT+YADLL+SPKK
Sbjct: 361 EALNLLGLSPETYFSIHTDNEDGTQLGGSSLPPPFPSCTLRTALTRYADLLNSPKKSALL 420
Query: 424 ------------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIV 459
DEY+Q +V SQ+SLLEVM+EFPSAKPPLGVFFAA+
Sbjct: 421 ALAAHASNPIEADRLRYLASPAGKDEYSQSVVGSQKSLLEVMAEFPSAKPPLGVFFAAVA 480
Query: 460 PRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSW 519
PRLQPR+YSISSSPR+APSRIHVTCALVY+K PTGR+HKG+CSTWMKNS+PMEK ++CSW
Sbjct: 481 PRLQPRFYSISSSPRMAPSRIHVTCALVYDKMPTGRIHKGICSTWMKNSVPMEKIHECSW 540
Query: 520 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRN 579
APIFVRQSNFKLP+D+KVPIIM+GPGTGLAPFRGFLQER AL+E+G ELGPS+LFFGCRN
Sbjct: 541 APIFVRQSNFKLPSDSKVPIIMVGPGTGLAPFRGFLQERLALKESGVELGPSILFFGCRN 600
Query: 580 RKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYV 639
R MDYIYEDELNNFV++GALS+L++AFSREGPTKEYVQHKM EK+SDIWN++S+GAYLYV
Sbjct: 601 RAMDYIYEDELNNFVETGALSELVIAFSREGPTKEYVQHKMTEKASDIWNLISQGAYLYV 660
Query: 640 CGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
CGDAK MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQ +GRYLRDVW
Sbjct: 661 CGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQTSGRYLRDVW 708
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461207|ref|XP_004148333.1| PREDICTED: NADPH--cytochrome P450 reductase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1116 bits (2887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/707 (77%), Positives = 615/707 (86%), Gaps = 30/707 (4%)
Query: 9 ESGTMKVSPFDLMSAIIRGGKVDPSNVSSSGSGVEVASIVLDNKEFVMILTTSIAVLIGC 68
ES +MKVSP +LMSAIIR +DPS SS S EVA+++LDN+EFVMILTTSIAVLIGC
Sbjct: 4 ESRSMKVSPLELMSAIIRKA-MDPSQ-DSSESVREVATLILDNREFVMILTTSIAVLIGC 61
Query: 69 VVVFILRRSSSSKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADE 128
VVVF+ +RSS K K EP K L+VKEPE EVDDGK+KVT+FFGTQTGTAEGFAKALA+E
Sbjct: 62 VVVFVWKRSSGQKAKPFEPPKQLIVKEPEPEVDDGKKKVTVFFGTQTGTAEGFAKALAEE 121
Query: 129 ARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188
A+ARYDKA F+VVD+DDYA ++DEYEEKLKKE + FFLATYGDGEPTDNAARFYKWF+E
Sbjct: 122 AKARYDKATFRVVDLDDYAADDDEYEEKLKKETLAIFFLATYGDGEPTDNAARFYKWFSE 181
Query: 189 QKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDD 248
KE GEW+ L+Y VFGLGNRQYEHFNKIAKVVDE LA QG KRLVPVGLGDDDQCIEDD
Sbjct: 182 GKEKGEWISNLQYAVFGLGNRQYEHFNKIAKVVDEQLAEQGGKRLVPVGLGDDDQCIEDD 241
Query: 249 FSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHA 308
FS WRE +WPELD LLRD+DD T+VSTPYTAA+ EYRVVFYD AD S G+K W ANGHA
Sbjct: 242 FSVWREQLWPELDKLLRDEDDSTSVSTPYTAAVLEYRVVFYDAADVSGGDKRWAFANGHA 301
Query: 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEE 368
VYDAQHPCR+NVAVRKELHT +SDRSC HLEFDI+GTGLTYETGDHVGV+CENL E VEE
Sbjct: 302 VYDAQHPCRANVAVRKELHTSASDRSCIHLEFDISGTGLTYETGDHVGVFCENLDEVVEE 361
Query: 369 ALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK----- 423
A+ L+G+SP+TYFS+HTDKEDGTPL S+LPP F PC+LRTALT+YADLLSSPKK
Sbjct: 362 AIRLIGMSPETYFSIHTDKEDGTPLSGSSLPPPFAPCTLRTALTQYADLLSSPKKSALVA 421
Query: 424 -----------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVP 460
DEY+QWIVASQRSLLEVM EFPSA+PPLGVFFAA+ P
Sbjct: 422 LAAHASDPAEADRLRHLSSPAGKDEYSQWIVASQRSLLEVMVEFPSARPPLGVFFAAVAP 481
Query: 461 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 520
RLQPRYYSISSSPR+APSRIHVTCALVY+KTPTGR+HKG+CSTWMKN++ +E+S CSWA
Sbjct: 482 RLQPRYYSISSSPRMAPSRIHVTCALVYDKTPTGRIHKGVCSTWMKNAISLEESQACSWA 541
Query: 521 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 580
PI+VRQSNFKLP D+K+PIIMIGPGTGLAPFRGFLQER AL+E+G ELG S+LFFGCRNR
Sbjct: 542 PIYVRQSNFKLPTDSKLPIIMIGPGTGLAPFRGFLQERLALKESGVELGHSILFFGCRNR 601
Query: 581 KMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVC 640
KMDYIYEDELNNFV++GALS+LI+AFSREGP+KEYVQHKM+EK+SDIWN+LS+GAY+YVC
Sbjct: 602 KMDYIYEDELNNFVETGALSELILAFSREGPSKEYVQHKMVEKASDIWNLLSQGAYIYVC 661
Query: 641 GDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
GDAK MARDVHRTLH IVQEQGSLDSSKAESMVKNLQM+GRYLRDVW
Sbjct: 662 GDAKGMARDVHRTLHNIVQEQGSLDSSKAESMVKNLQMSGRYLRDVW 708
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449522700|ref|XP_004168364.1| PREDICTED: NADPH--cytochrome P450 reductase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1115 bits (2885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/707 (77%), Positives = 615/707 (86%), Gaps = 30/707 (4%)
Query: 9 ESGTMKVSPFDLMSAIIRGGKVDPSNVSSSGSGVEVASIVLDNKEFVMILTTSIAVLIGC 68
ES +MKVSP +LMSAIIR +DPS SS S EVA+++LDN+EFVMILTTSIAVLIGC
Sbjct: 4 ESRSMKVSPLELMSAIIRKA-MDPSQ-DSSESVREVATLILDNREFVMILTTSIAVLIGC 61
Query: 69 VVVFILRRSSSSKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADE 128
VVVF+ +RSS K K EP K L+VKEPE EVDDGK+KVT+FFGTQTGTAEGFAKALA+E
Sbjct: 62 VVVFVWKRSSGQKAKPFEPPKQLIVKEPEPEVDDGKKKVTVFFGTQTGTAEGFAKALAEE 121
Query: 129 ARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188
A+ARYDKA F+VVD+DDYA ++DEYEEKLKKE + FFLATYGDGEPTDNAARFYKWF+E
Sbjct: 122 AKARYDKATFRVVDLDDYAADDDEYEEKLKKETLAIFFLATYGDGEPTDNAARFYKWFSE 181
Query: 189 QKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDD 248
KE GEW+ L+Y VFGLGNRQYEHFNKIAKVVDE LA QG KRLVPVGLGDDDQCIEDD
Sbjct: 182 GKEKGEWISNLQYAVFGLGNRQYEHFNKIAKVVDEQLAEQGGKRLVPVGLGDDDQCIEDD 241
Query: 249 FSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHA 308
FS WRE +WPELD LLRD+DD T+VSTPYTAA+ EYRVVFYD AD S G+K W ANGHA
Sbjct: 242 FSVWREQLWPELDKLLRDEDDSTSVSTPYTAAVLEYRVVFYDAADVSGGDKRWAFANGHA 301
Query: 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEE 368
VYDAQHPCR+NVAVRKELHT +SDRSC HLEFDI+GTGLTYETGDHVGV+CENL E VEE
Sbjct: 302 VYDAQHPCRANVAVRKELHTSASDRSCIHLEFDISGTGLTYETGDHVGVFCENLDEVVEE 361
Query: 369 ALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK----- 423
A+ L+G+SP+TYFS+HTDKEDGTPL S+LPP F PC+LRTALT+YADLLSSPKK
Sbjct: 362 AIRLIGMSPETYFSIHTDKEDGTPLSGSSLPPPFAPCTLRTALTQYADLLSSPKKSALVA 421
Query: 424 -----------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVP 460
DEY+QWIVASQRSLLEVM EFPSA+PPLGVFFAA+ P
Sbjct: 422 LAAHASDPAEADRLRHLSSPAGKDEYSQWIVASQRSLLEVMVEFPSARPPLGVFFAAVAP 481
Query: 461 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 520
RLQPRYYSISSSPR+APSRIHVTCALVY+KTPTGR+HKG+CSTWMKN++ +E+S CSWA
Sbjct: 482 RLQPRYYSISSSPRMAPSRIHVTCALVYDKTPTGRIHKGVCSTWMKNAISLEESQACSWA 541
Query: 521 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 580
PI+VRQSNFKLP D+K+PIIMIGPGTGLAPFRGFLQER A++E+G ELG S+LFFGCRNR
Sbjct: 542 PIYVRQSNFKLPTDSKLPIIMIGPGTGLAPFRGFLQERLAMKESGVELGHSILFFGCRNR 601
Query: 581 KMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVC 640
KMDYIYEDELNNFV++GALS+LI+AFSREGP+KEYVQHKM+EK+SDIWN+LS+GAY+YVC
Sbjct: 602 KMDYIYEDELNNFVETGALSELILAFSREGPSKEYVQHKMVEKASDIWNLLSQGAYIYVC 661
Query: 641 GDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
GDAK MARDVHRTLH IVQEQGSLDSSKAESMVKNLQM+GRYLRDVW
Sbjct: 662 GDAKGMARDVHRTLHNIVQEQGSLDSSKAESMVKNLQMSGRYLRDVW 708
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255587986|ref|XP_002534464.1| cytochrome P450, putative [Ricinus communis] gi|223525245|gb|EEF27920.1| cytochrome P450, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1103 bits (2854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/694 (77%), Positives = 601/694 (86%), Gaps = 32/694 (4%)
Query: 1 MQSSSSSSESGTMKVSPFDLMSAIIRGGKVDPSNVSSSGSGVEVASIVLDNKEFVMILTT 60
MQ SSSS+ S MKVSPFDL+SA+I+G +DPSNVSS S VEVA+++ +N+EFVMILTT
Sbjct: 1 MQPSSSSAGS-IMKVSPFDLISAVIKG-NLDPSNVSSESSAVEVATMLYENREFVMILTT 58
Query: 61 SIAVLIGCVVVFILRRSSSSKPKKV--EPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTA 118
SIAVLIGCVVV + RRS S K K V EPLKPLVVKEPE E DDG+++VTIFFGTQTGTA
Sbjct: 59 SIAVLIGCVVVLVWRRSGSQKSKSVAIEPLKPLVVKEPEPEPDDGQKRVTIFFGTQTGTA 118
Query: 119 EGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDN 178
EGFAKAL++EA+ARY+KA FKVVD+DDYA ++DEYE KLKKE++ FF+ATYGDGEPTDN
Sbjct: 119 EGFAKALSEEAKARYEKATFKVVDLDDYAADDDEYETKLKKESLALFFVATYGDGEPTDN 178
Query: 179 AARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGL 238
AARFYKWFTE KE GEWLQ LK+GVFGLGN+QYEHFNKIAKV+DE+L QGAKRLVPVGL
Sbjct: 179 AARFYKWFTEGKERGEWLQDLKFGVFGLGNKQYEHFNKIAKVLDELLEEQGAKRLVPVGL 238
Query: 239 GDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGE 298
GDDDQCIEDDF+AW+E +WPELD +LR +DD TVSTPYTAA+ EYR+VFYD DA + +
Sbjct: 239 GDDDQCIEDDFTAWKESLWPELDQVLRGEDDAATVSTPYTAAVLEYRIVFYDPEDAPIED 298
Query: 299 KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVY 358
K W N NGHAVYDAQHPCR+NVAVRKELHTP+SDRSCTHLEFDIAGTGL+YETGDHVGVY
Sbjct: 299 KRWSNTNGHAVYDAQHPCRANVAVRKELHTPASDRSCTHLEFDIAGTGLSYETGDHVGVY 358
Query: 359 CENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLL 418
CENL ETVEEAL LLGLSPDTYFS+H DKEDGT L S+LP FPPC+LRTALT+YADLL
Sbjct: 359 CENLDETVEEALQLLGLSPDTYFSIHADKEDGTALSGSSLPAPFPPCTLRTALTRYADLL 418
Query: 419 SSPKK----------------------------DEYAQWIVASQRSLLEVMSEFPSAKPP 450
SSPKK DEY QWIVA+QRSLLEVM+EFPSAKPP
Sbjct: 419 SSPKKSALLALAAHATDPTEADRLRHLASPAGKDEYTQWIVAAQRSLLEVMAEFPSAKPP 478
Query: 451 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP 510
LGVFFA++ PRLQPR+YSISSSPR+APSRIHVTCALV +KTPTGRVHKG+CSTWMKNS+P
Sbjct: 479 LGVFFASVAPRLQPRFYSISSSPRMAPSRIHVTCALVLDKTPTGRVHKGVCSTWMKNSVP 538
Query: 511 MEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGP 570
MEKS++CSWAPIFVRQSNFKLPAD KVPIIMIGPGTGLAPFRGFLQER AL+EAG ELGP
Sbjct: 539 MEKSHECSWAPIFVRQSNFKLPADTKVPIIMIGPGTGLAPFRGFLQERLALKEAGVELGP 598
Query: 571 SLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNM 630
S+LFFGCRN KMDYIYEDELNN+V+S ALS+LIVAFSREGPTK+YVQHKM EK+ DIWNM
Sbjct: 599 SVLFFGCRNSKMDYIYEDELNNYVESDALSELIVAFSREGPTKQYVQHKMSEKALDIWNM 658
Query: 631 LSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSL 664
+S+G Y+YVCGDAK MARDVHRTLHTIVQEQ S
Sbjct: 659 ISQGGYIYVCGDAKGMARDVHRTLHTIVQEQVSF 692
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|197209812|dbj|BAG68945.1| cytochrome P450 reductase [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 1098 bits (2839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/710 (75%), Positives = 606/710 (85%), Gaps = 37/710 (5%)
Query: 9 ESGTMKVSPFDLMSAIIRGGKVDPSNVSS-SGSGVEVASIVLDNKEFVMILTTSIAVLIG 67
ES +MK+SP DLMSA+I+G +DPSNVSS SG+G S+ L+N+EFVM+LTTSIAVLIG
Sbjct: 3 ESSSMKISPLDLMSAMIKG-TLDPSNVSSTSGAG----SVFLENREFVMVLTTSIAVLIG 57
Query: 68 CVVVFILRRSSSSKPKKVEPLKPLVVK-EPEVEVDDGKQKVTIFFGTQTGTAEGFAKALA 126
CVVVFI RRS+ +K K +EP K +V K E EVDDG +KVTIFFGTQTGTAEGFAKA+A
Sbjct: 58 CVVVFIWRRSTGNKAKSIEPPKRVVEKLSDEAEVDDGTRKVTIFFGTQTGTAEGFAKAIA 117
Query: 127 DEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWF 186
+EA+ RY+KA FK+VD+DDYA ++DEYEEKLKKE + FFLATYGDGEPTDNAARFYKWF
Sbjct: 118 EEAKVRYEKAKFKIVDMDDYAQDDDEYEEKLKKETLALFFLATYGDGEPTDNAARFYKWF 177
Query: 187 TEQKEGGE-WLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCI 245
E E E WL+ L+Y VFGLGNRQYEHFNK+A VD+ LA+ G KRLV VGLGDDDQCI
Sbjct: 178 LEGDEKEEGWLRNLEYAVFGLGNRQYEHFNKVAIEVDDKLADFGGKRLVKVGLGDDDQCI 237
Query: 246 EDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNAN 305
EDDF+AW+E +WP LD LLR DDD TTVSTPYTAA+ EYRVV +D DASV EK W N N
Sbjct: 238 EDDFTAWKEELWPALDELLRGDDD-TTVSTPYTAAVLEYRVVIHDPLDASVDEKKWHNVN 296
Query: 306 GHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSET 365
GHA+ DAQHP RSNVAVRKELHTP SDRSCTHLEFDI+GTG+ YETGDHVGVYCENLSET
Sbjct: 297 GHAIVDAQHPVRSNVAVRKELHTPVSDRSCTHLEFDISGTGVAYETGDHVGVYCENLSET 356
Query: 366 VEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK-- 423
VEEA+ LLGLSPDTYFS+HTD EDG PL S+LPPTFPPC+LRTA+ +YAD+LSSPKK
Sbjct: 357 VEEAVRLLGLSPDTYFSVHTDDEDGKPLSGSSLPPTFPPCTLRTAIARYADVLSSPKKSV 416
Query: 424 --------------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAA 457
DEY++W++ASQRSLLEVM+EFPSAKPP+GVFFAA
Sbjct: 417 LLALAAHASNPSEADRLRHLASPAGKDEYSEWVIASQRSLLEVMAEFPSAKPPIGVFFAA 476
Query: 458 IVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 517
I PRLQPR+YSISSSPR+APSRIHVTCALV +K PTGR+H+G+CSTWMKNS+P+EKS DC
Sbjct: 477 IAPRLQPRFYSISSSPRMAPSRIHVTCALVNDKMPTGRIHRGVCSTWMKNSVPLEKSQDC 536
Query: 518 SWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGC 577
SWAPIFVRQSNFKLPAD KVPIIMIGPGTGLAPFRGFLQER AL+E GAELGPS+LFFGC
Sbjct: 537 SWAPIFVRQSNFKLPADNKVPIIMIGPGTGLAPFRGFLQERLALKEDGAELGPSVLFFGC 596
Query: 578 RNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYL 637
RNR+MDYIYEDELN+FV SGALS+LIVAFSREGPTKEYVQHKMMEK+SDIWNM+S+GAY+
Sbjct: 597 RNRQMDYIYEDELNHFVNSGALSELIVAFSREGPTKEYVQHKMMEKASDIWNMISQGAYI 656
Query: 638 YVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
YVCGDAK MARDVHRTLHTI+QEQGSLDSSKAE MVKNLQ+ GRYLRDVW
Sbjct: 657 YVCGDAKGMARDVHRTLHTILQEQGSLDSSKAEGMVKNLQLNGRYLRDVW 706
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297735398|emb|CBI17838.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1087 bits (2810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/660 (79%), Positives = 583/660 (88%), Gaps = 28/660 (4%)
Query: 56 MILTTSIAVLIGCVVVFILRRSSSSKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQT 115
MILTTSIAVLIGCVVV I RRS + K EP KPL+VK+ EVEVDDGKQKVTIFFGTQT
Sbjct: 1 MILTTSIAVLIGCVVVLIWRRSGQKQSKTPEPPKPLIVKDLEVEVDDGKQKVTIFFGTQT 60
Query: 116 GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEP 175
GTAEGFAKALA+EA+ARY+KAIFKVVD+DDYA ++DEYEEKLKKE + FFFLATYGDGEP
Sbjct: 61 GTAEGFAKALAEEAKARYEKAIFKVVDLDDYAGDDDEYEEKLKKETLAFFFLATYGDGEP 120
Query: 176 TDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235
TDNAARFYKWF E KE GEWLQ LKYGVFGLGNRQYEHFNK+AKVVD+I+ QG KR+VP
Sbjct: 121 TDNAARFYKWFAEGKERGEWLQNLKYGVFGLGNRQYEHFNKVAKVVDDIITEQGGKRIVP 180
Query: 236 VGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADAS 295
VGLGDDDQCIEDDF+AWREL+WPELD LLRD+DD TTVSTPYTAA+ EYRVVF+D AS
Sbjct: 181 VGLGDDDQCIEDDFAAWRELLWPELDQLLRDEDDATTVSTPYTAAVLEYRVVFHDPEGAS 240
Query: 296 VGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHV 355
+ +KSWG+ANGH V+DAQHPCR+NVAVRKELHTP+SDRSCTHLEFDI+GTGLTYETGDHV
Sbjct: 241 LQDKSWGSANGHTVHDAQHPCRANVAVRKELHTPASDRSCTHLEFDISGTGLTYETGDHV 300
Query: 356 GVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYA 415
GVYCENL ETVEEA LLG SPD YFS+HT++EDGTPL S+L P FPPC+LRTALT+YA
Sbjct: 301 GVYCENLPETVEEAERLLGFSPDVYFSIHTEREDGTPLSGSSLSPPFPPCTLRTALTRYA 360
Query: 416 DLLSSPKK----------------------------DEYAQWIVASQRSLLEVMSEFPSA 447
D+LSSPKK DEYAQW+VASQRSLLE+M+EFPSA
Sbjct: 361 DVLSSPKKSALVALAAHASDPSEADRLKYLASPSGKDEYAQWVVASQRSLLEIMAEFPSA 420
Query: 448 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN 507
KPPLGVFFAA+ PRLQPRYYSISSSP++ PSRIHVTCALV +K PTGR+HKG+CSTWMK
Sbjct: 421 KPPLGVFFAAVAPRLQPRYYSISSSPKMVPSRIHVTCALVCDKMPTGRIHKGICSTWMKY 480
Query: 508 SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAE 567
++P+E+S DCSWAPIFVRQSNFKLPAD VPIIMIGPGTGLAPFRGFLQERFAL+EAGAE
Sbjct: 481 AVPLEESQDCSWAPIFVRQSNFKLPADTSVPIIMIGPGTGLAPFRGFLQERFALKEAGAE 540
Query: 568 LGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDI 627
LG S+LFFGCRNRKMDYIYEDELN FV+SGALS+LIVAFSREGPTKEYVQHKMMEK+SDI
Sbjct: 541 LGSSILFFGCRNRKMDYIYEDELNGFVESGALSELIVAFSREGPTKEYVQHKMMEKASDI 600
Query: 628 WNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
WN++S+G Y+YVCGDAK MARDVHRTLHTI+QEQGSLDSSKAESMVKNLQMTGRYLRDVW
Sbjct: 601 WNVISQGGYIYVCGDAKGMARDVHRTLHTILQEQGSLDSSKAESMVKNLQMTGRYLRDVW 660
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|13183566|gb|AAK15261.1|AF302498_1 NADPH-cytochrome P450 oxydoreductase isoform 3 [Populus trichocarpa x Populus deltoides] | Back alignment and taxonomy information |
|---|
Score = 1085 bits (2805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/706 (76%), Positives = 606/706 (85%), Gaps = 32/706 (4%)
Query: 13 MKVSPFDLMSAIIRGGKVDPSNVSS--SGSGVEVASIVLDNKEFVMILTTSIAVLIGCVV 70
+KVSP DLM AII+G KVDP+NVSS GS EVA+++L+N+EFVMILTTSIAVLIGCVV
Sbjct: 8 IKVSPLDLMQAIIKG-KVDPANVSSESGGSVAEVATLILENREFVMILTTSIAVLIGCVV 66
Query: 71 VFILRRSSS-SKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADEA 129
V I RRSS +PK P KPL+VK+ E EVDDGK+KVTIFFGTQTGTAEGFAKALA+EA
Sbjct: 67 VLIWRRSSGYQRPKVPVPPKPLIVKDLEPEVDDGKKKVTIFFGTQTGTAEGFAKALAEEA 126
Query: 130 RARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQ 189
+ARYDKA FK VD+DDYA ++DEYEEKLKKE++V FFLATYGDGEPTDNAARFYKWFTE
Sbjct: 127 KARYDKATFKTVDMDDYAGDDDEYEEKLKKEDLVIFFLATYGDGEPTDNAARFYKWFTEG 186
Query: 190 KEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDF 249
E GEWL+ L Y VFGLGNRQYEHFNKIA VVD+I A+QG KRL PVGLGDDDQC+EDDF
Sbjct: 187 NERGEWLKDLPYAVFGLGNRQYEHFNKIAIVVDKIFADQGGKRLAPVGLGDDDQCMEDDF 246
Query: 250 SAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAV 309
+AWREL+WPE+D LL D DDPT VSTPY A +SEYRVVF+ DA + + +W NANGHAV
Sbjct: 247 AAWRELLWPEMDQLLLDGDDPTAVSTPYAATVSEYRVVFHSPEDAPLEDDNWSNANGHAV 306
Query: 310 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEA 369
YDAQHPCR+NVAVR+ELHTP+SDRSCTHLEF+I+GTGL Y TGDHVGVYCENLSETVEEA
Sbjct: 307 YDAQHPCRANVAVRRELHTPASDRSCTHLEFEISGTGLAYGTGDHVGVYCENLSETVEEA 366
Query: 370 LSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK------ 423
L LLGLSPDTYFS+H D EDGTPL LPP FPP +L+TAL +YADLLS PKK
Sbjct: 367 LQLLGLSPDTYFSIHNDNEDGTPLSGGALPPPFPPSTLKTALARYADLLSLPKKSALMAL 426
Query: 424 ----------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPR 461
DEYAQ +VA+QRSLLEVM+EFPSAKPPLGVFFA++ PR
Sbjct: 427 AAHATDPTEADRLRHLASPAGKDEYAQLLVANQRSLLEVMAEFPSAKPPLGVFFASVAPR 486
Query: 462 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 521
LQPRYYSISSSPR+APSRIHVTCALV EKT GR+HKG+CSTWMKN++P+EKS+DCSWAP
Sbjct: 487 LQPRYYSISSSPRMAPSRIHVTCALVLEKTLGGRIHKGVCSTWMKNAVPLEKSHDCSWAP 546
Query: 522 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRK 581
+FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQER AL+EAG+ELG S+LFFGCRNRK
Sbjct: 547 VFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERLALKEAGSELGSSVLFFGCRNRK 606
Query: 582 MDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCG 641
MD+IYEDELNNFV+SGALS+L+VAFSREGPTKEYVQHKMM+K+SDIWNM+S+G YLYVCG
Sbjct: 607 MDFIYEDELNNFVESGALSELVVAFSREGPTKEYVQHKMMQKASDIWNMISQGGYLYVCG 666
Query: 642 DAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
DAK MA+DVHR LHTIVQEQGSLD+SK ES VK+LQM GRYLRDVW
Sbjct: 667 DAKGMAKDVHRALHTIVQEQGSLDNSKTESFVKSLQMNGRYLRDVW 712
|
Source: Populus trichocarpa x Populus deltoides Species: Populus trichocarpa x Populus deltoides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562353|ref|XP_003549436.1| PREDICTED: NADPH--cytochrome P450 reductase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1080 bits (2794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/708 (74%), Positives = 610/708 (86%), Gaps = 32/708 (4%)
Query: 9 ESGTMKVSPFDLMSAIIRGGKVDPSNVSSSGSGVEVASIVLDNKEFVMILTTSIAVLIGC 68
+S +MK+SP DLMSAI +G K+DPSNVSSS + A+ +L+N++F+M+LTTS+AVLIGC
Sbjct: 3 DSSSMKISPLDLMSAIFKG-KLDPSNVSSS-TNAAAAAFLLENRDFLMLLTTSVAVLIGC 60
Query: 69 VVVFILRRSSSSKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADE 128
VVVFI RRSSS K K +EP K +V K PE+EVDDG +KVTI FGTQTGTAEGFAKA A+E
Sbjct: 61 VVVFIWRRSSSPKAKPLEPPKRVVEKLPEIEVDDGTKKVTILFGTQTGTAEGFAKATAEE 120
Query: 129 ARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188
A+ARY+KA F+VVD+DDYA ++DEYEE+ KKE V FFLATYGDGEPTDNAARFYKWFTE
Sbjct: 121 AKARYEKATFRVVDMDDYAADDDEYEERFKKETHVLFFLATYGDGEPTDNAARFYKWFTE 180
Query: 189 QKEGGE-WLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIED 247
E GE WLQ L YGVFGLGNRQYEHFNK+AKVVD++L QG KRLVPVGLGDDDQCIED
Sbjct: 181 GGEKGEGWLQNLHYGVFGLGNRQYEHFNKVAKVVDDMLVEQGGKRLVPVGLGDDDQCIED 240
Query: 248 DFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGH 307
DF+AW+E +WP LD LLRD+DD TVSTPYTAA+ EYRVV +D +ASV EK W N NGH
Sbjct: 241 DFTAWKEELWPALDELLRDEDD-ATVSTPYTAAVLEYRVVIHDPLEASVDEKKWHNVNGH 299
Query: 308 AVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVE 367
A+ DAQHP R+NVAVRKELHTP+SDRSCTHLEFDI+GTG+TYETGDHVGVYCENLSETVE
Sbjct: 300 AIVDAQHPVRANVAVRKELHTPASDRSCTHLEFDISGTGVTYETGDHVGVYCENLSETVE 359
Query: 368 EALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK---- 423
EA+ L+GLSPDTYFS+HTD EDG P S+LPPTFPPC+LRTALT+YAD+LSSPKK
Sbjct: 360 EAIRLIGLSPDTYFSIHTDDEDGKPRSGSSLPPTFPPCTLRTALTRYADVLSSPKKSALL 419
Query: 424 ------------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIV 459
DEY++W++ASQRSLLEVM+EFPSAKPP+GVFFAA+
Sbjct: 420 ALAAHASDPSEADRLRHLASPAGKDEYSEWVIASQRSLLEVMAEFPSAKPPIGVFFAAVA 479
Query: 460 PRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSW 519
PRLQPR+YSISSSPR+ P+RIHVTCALV+EK PTGR+HKG+CSTWMKNS+P+EKS DCSW
Sbjct: 480 PRLQPRFYSISSSPRMVPNRIHVTCALVHEKMPTGRIHKGVCSTWMKNSVPLEKSQDCSW 539
Query: 520 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRN 579
APIFVR SNF+LP+D KVPIIMIGPGTGLAPFRGFLQER AL+E GAELGPS+LFFGCRN
Sbjct: 540 APIFVRTSNFRLPSDNKVPIIMIGPGTGLAPFRGFLQERLALKEGGAELGPSVLFFGCRN 599
Query: 580 RKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYV 639
R+MDYIYEDEL++FV +GAL +LI+AFSREGPTKEYVQHKMMEK+S+IW+M+S+GAY+YV
Sbjct: 600 RQMDYIYEDELSHFVNTGALDELILAFSREGPTKEYVQHKMMEKASEIWSMISQGAYIYV 659
Query: 640 CGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
CGDAK MARDVHR LHTI+QEQGSLDSSKAESMVKNLQ TGRYLRDVW
Sbjct: 660 CGDAKGMARDVHRALHTILQEQGSLDSSKAESMVKNLQTTGRYLRDVW 707
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 687 | ||||||
| TAIR|locus:2121894 | 692 | ATR1 "P450 reductase 1" [Arabi | 0.393 | 0.390 | 0.760 | 4.1e-221 | |
| UNIPROTKB|F1P7R1 | 703 | POR "NADPH--cytochrome P450 re | 0.388 | 0.379 | 0.446 | 9e-111 | |
| UNIPROTKB|P04175 | 678 | POR "NADPH--cytochrome P450 re | 0.388 | 0.393 | 0.457 | 1.1e-110 | |
| UNIPROTKB|A5D9D3 | 680 | POR "NADPH--cytochrome P450 re | 0.388 | 0.392 | 0.450 | 1.9e-110 | |
| UNIPROTKB|Q3SYT8 | 678 | POR "NADPH--cytochrome P450 re | 0.388 | 0.393 | 0.450 | 1.9e-110 | |
| RGD|68335 | 678 | Por "P450 (cytochrome) oxidore | 0.388 | 0.393 | 0.442 | 1.3e-109 | |
| MGI|MGI:97744 | 678 | Por "P450 (cytochrome) oxidore | 0.388 | 0.393 | 0.442 | 1.7e-109 | |
| FB|FBgn0015623 | 679 | Cpr "Cytochrome P450 reductase | 0.382 | 0.387 | 0.457 | 2.4e-108 | |
| ZFIN|ZDB-GENE-050809-121 | 674 | por "P450 (cytochrome) oxidore | 0.387 | 0.394 | 0.430 | 8.3e-104 | |
| ZFIN|ZDB-GENE-030131-5767 | 676 | zgc:63480 "zgc:63480" [Danio r | 0.387 | 0.393 | 0.411 | 3.6e-103 |
| TAIR|locus:2121894 ATR1 "P450 reductase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1118 (398.6 bits), Expect = 4.1e-221, Sum P(2) = 4.1e-221
Identities = 206/271 (76%), Positives = 238/271 (87%)
Query: 418 LSSPK-KDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVA 476
L+SP KDEY+QWIVASQRSLLEVM+ FPSAKPPLGVFFAAI PRLQPRYYSISSSPR+A
Sbjct: 422 LTSPDGKDEYSQWIVASQRSLLEVMAAFPSAKPPLGVFFAAIAPRLQPRYYSISSSPRLA 481
Query: 477 PSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAK 536
PSR+HVT ALVY TPTGR+HKG+CSTWMKN++P EKS++CS APIF+R SNFKLP++
Sbjct: 482 PSRVHVTSALVYGPTPTGRIHKGVCSTWMKNAVPAEKSHECSGAPIFIRASNFKLPSNPS 541
Query: 537 VPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS 596
PI+M+GPGTGLAPFRGFLQER AL+E G ELG SLLFFGCRNR+MD+IYEDELNNFV
Sbjct: 542 TPIVMVGPGTGLAPFRGFLQERMALKEDGEELGSSLLFFGCRNRQMDFIYEDELNNFVDQ 601
Query: 597 GALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656
G +S+LI+AFSREG KEYVQHKMMEK++ +W+++ E YLYVCGDAK MARDVHRTLHT
Sbjct: 602 GVISELIMAFSREGAQKEYVQHKMMEKAAQVWDLIKEEGYLYVCGDAKGMARDVHRTLHT 661
Query: 657 IVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
IVQEQ + SS+AE++VK LQ GRYLRDVW
Sbjct: 662 IVQEQEGVSSSEAEAIVKKLQTEGRYLRDVW 692
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| UNIPROTKB|F1P7R1 POR "NADPH--cytochrome P450 reductase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 658 (236.7 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 121/271 (44%), Positives = 184/271 (67%)
Query: 419 SSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPS 478
S K+ Y W+V ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+
Sbjct: 434 SGEGKELYLSWVVEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPN 492
Query: 479 RIHVTCALVYE-KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKV 537
+H+ CA+ E +T +GR++KG+ ++W++ P ++ + P+FVR+S F+LP A
Sbjct: 493 SVHI-CAVAVEYQTRSGRINKGVATSWLRAKEPAGENGRRALVPMFVRKSQFRLPFKAAT 551
Query: 538 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 597
P+IM+GPGTG+APF GF+QER L++ G E+G +LL++GCR DY+Y +EL F Q G
Sbjct: 552 PVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHQDG 611
Query: 598 ALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHT 656
+L+QL VAFSRE P K YVQH + +W ++ E GA++YVCGDA++MARDV T +
Sbjct: 612 SLTQLNVAFSREQPHKVYVQHLLKRDKEHLWQLIHEAGAHIYVCGDARNMARDVQNTFYD 671
Query: 657 IVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
IV E G+++ ++A +K L GRY DVW
Sbjct: 672 IVAEVGAMEHAQAVDYIKKLMTKGRYSLDVW 702
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| UNIPROTKB|P04175 POR "NADPH--cytochrome P450 reductase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 658 (236.7 bits), Expect = 1.1e-110, Sum P(2) = 1.1e-110
Identities = 124/271 (45%), Positives = 182/271 (67%)
Query: 419 SSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPS 478
S K+ Y W+V ++R +L ++ ++PS +PP+ +PRLQ RYYSI+SS +V P+
Sbjct: 409 SGEGKELYLSWVVEARRHILAILQDYPSLRPPID-HLCERLPRLQARYYSIASSSKVHPN 467
Query: 479 RIHVTCALVYE-KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKV 537
+H+ CA+V E +T +GRV+KG+ ++W++ P ++ + P+FVR+S F+LP A
Sbjct: 468 SVHI-CAVVVEYETKSGRVNKGVATSWLRAKEPAGENGRRALVPMFVRKSQFRLPFKATT 526
Query: 538 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 597
P+IM+GPGTG+APF GF+QER LQE G E+G +LL++GCR DY+Y +EL F G
Sbjct: 527 PVIMVGPGTGVAPFIGFIQERAWLQEQGKEVGETLLYYGCRRSDEDYLYREELAQFHAKG 586
Query: 598 ALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHT 656
AL++L VAFSRE P K YVQH + +W ++ +G A++Y+CGDA++MARDV T
Sbjct: 587 ALTRLSVAFSREQPQKVYVQHLLKRDKEHLWKLIHDGGAHIYICGDARNMARDVQNTFCD 646
Query: 657 IVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
IV EQG ++ ++A VK L GRY DVW
Sbjct: 647 IVAEQGPMEHAQAVDYVKKLMTKGRYSLDVW 677
|
|
| UNIPROTKB|A5D9D3 POR "NADPH--cytochrome P450 reductase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 1.9e-110, Sum P(2) = 1.9e-110
Identities = 122/271 (45%), Positives = 187/271 (69%)
Query: 419 SSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPS 478
S K+ Y +W++ ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+
Sbjct: 411 SGEGKELYLRWVLEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPN 469
Query: 479 RIHVTCALVYE-KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKV 537
+H+ CA+ E +T TGR++KG+ ++W++ P ++ + P++VR+S F+LP A
Sbjct: 470 SVHI-CAVAVEYETKTGRINKGVATSWLRAKEPAGENGGRALVPMYVRKSQFRLPFKATT 528
Query: 538 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 597
P+IM+GPGTG+APF GF+QER L++ G E+G +LL++GCR DY+Y +EL F + G
Sbjct: 529 PVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAGFHKDG 588
Query: 598 ALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHT 656
AL+QL VAFSRE P K YVQH + + +W ++ EG A++YVCGDA++MARDV T +
Sbjct: 589 ALTQLNVAFSREQPQKVYVQHLLKKDKEHLWKLIHEGGAHIYVCGDARNMARDVQNTFYD 648
Query: 657 IVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
IV EQG+++ ++A VK L GRY DVW
Sbjct: 649 IVAEQGAMEHAQAVDYVKKLMTKGRYSLDVW 679
|
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| UNIPROTKB|Q3SYT8 POR "NADPH--cytochrome P450 reductase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 1.9e-110, Sum P(2) = 1.9e-110
Identities = 122/271 (45%), Positives = 187/271 (69%)
Query: 419 SSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPS 478
S K+ Y +W++ ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+
Sbjct: 409 SGEGKELYLRWVLEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPN 467
Query: 479 RIHVTCALVYE-KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKV 537
+H+ CA+ E +T TGR++KG+ ++W++ P ++ + P++VR+S F+LP A
Sbjct: 468 SVHI-CAVAVEYETKTGRINKGVATSWLRAKEPAGENGGRALVPMYVRKSQFRLPFKATT 526
Query: 538 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 597
P+IM+GPGTG+APF GF+QER L++ G E+G +LL++GCR DY+Y +EL F + G
Sbjct: 527 PVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAGFHKDG 586
Query: 598 ALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHT 656
AL+QL VAFSRE P K YVQH + + +W ++ EG A++YVCGDA++MARDV T +
Sbjct: 587 ALTQLNVAFSREQPQKVYVQHLLKKDKEHLWKLIHEGGAHIYVCGDARNMARDVQNTFYD 646
Query: 657 IVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
IV EQG+++ ++A VK L GRY DVW
Sbjct: 647 IVAEQGAMEHAQAVDYVKKLMTKGRYSLDVW 677
|
|
| RGD|68335 Por "P450 (cytochrome) oxidoreductase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 1.3e-109, Sum P(2) = 1.3e-109
Identities = 120/271 (44%), Positives = 181/271 (66%)
Query: 419 SSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPS 478
S K+ Y W+V ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+
Sbjct: 409 SGEGKELYLSWVVEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPN 467
Query: 479 RIHVTCALVYE-KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKV 537
+H+ CA+ E + +GRV+KG+ ++W++ P ++ + P+FVR+S F+LP +
Sbjct: 468 SVHI-CAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTT 526
Query: 538 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 597
P+IM+GPGTG+APF GF+QER L+E G E+G +LL++GCR DY+Y +EL F + G
Sbjct: 527 PVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDG 586
Query: 598 ALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHT 656
AL+QL VAFSRE K YVQH + +W ++ EG A++YVCGDA++MA+DV T +
Sbjct: 587 ALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYD 646
Query: 657 IVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
IV E G ++ ++A VK L GRY DVW
Sbjct: 647 IVAEFGPMEHTQAVDYVKKLMTKGRYSLDVW 677
|
|
| MGI|MGI:97744 Por "P450 (cytochrome) oxidoreductase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 643 (231.4 bits), Expect = 1.7e-109, Sum P(2) = 1.7e-109
Identities = 120/271 (44%), Positives = 180/271 (66%)
Query: 419 SSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPS 478
S K+ Y W+V ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+
Sbjct: 409 SGEGKELYLSWVVEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPN 467
Query: 479 RIHVTCALVYE-KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKV 537
+H+ CA+ E + +GRV+KG+ ++W++ P ++ + P+FVR+S F+LP
Sbjct: 468 SVHI-CAVAVEYEAKSGRVNKGVATSWLRTKEPAGENGRRALVPMFVRKSQFRLPFKPTT 526
Query: 538 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 597
P+IM+GPGTG+APF GF+QER L+E G E+G +LL++GCR DY+Y +EL F + G
Sbjct: 527 PVIMVGPGTGVAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDG 586
Query: 598 ALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHT 656
AL+QL VAFSRE K YVQH + +W ++ EG A++YVCGDA++MA+DV T +
Sbjct: 587 ALTQLNVAFSREQAHKVYVQHLLKRDKEHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYD 646
Query: 657 IVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
IV E G ++ ++A VK L GRY DVW
Sbjct: 647 IVAEFGPMEHTQAVDYVKKLMTKGRYSLDVW 677
|
|
| FB|FBgn0015623 Cpr "Cytochrome P450 reductase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 640 (230.4 bits), Expect = 2.4e-108, Sum P(2) = 2.4e-108
Identities = 124/271 (45%), Positives = 183/271 (67%)
Query: 420 SPK-KDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPS 478
SP+ K++Y WI + R+++ ++ + S +PP+ ++PRLQPRYYSISSS ++ P+
Sbjct: 413 SPEGKEKYQSWIQDACRNIVHILEDIKSCRPPID-HVCELLPRLQPRYYSISSSAKLHPT 471
Query: 479 RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVP 538
+HVT LV KTPTGR++KG+ +T++KN P + S + P+F+R+S F+LP + P
Sbjct: 472 DVHVTAVLVEYKTPTGRINKGVATTYLKNKQP-QGSEEVK-VPVFIRKSQFRLPTKPETP 529
Query: 539 IIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 598
IIM+GPGTGLAPFRGF+QER L++ G +G S+L+FGCR R DYIYE EL +V+ G
Sbjct: 530 IIMVGPGTGLAPFRGFIQERQFLRDEGKTVGESILYFGCRKRSEDYIYESELEEWVKKGT 589
Query: 599 LSQLIVAFSREGPTKEYVQHKMMEKSSD-IWNMLSEG-AYLYVCGDAKSMARDVHRTLHT 656
L+ L AFSR+ K YVQH ++E+ +D IWN++ E + Y+CGDAK+MA DV L
Sbjct: 590 LN-LKAAFSRDQGKKVYVQH-LLEQDADLIWNVIGENKGHFYICGDAKNMAVDVRNILVK 647
Query: 657 IVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
I+ +G++ + A +K ++ RY DVW
Sbjct: 648 ILSTKGNMSEADAVQYIKKMEAQKRYSADVW 678
|
|
| ZFIN|ZDB-GENE-050809-121 por "P450 (cytochrome) oxidoreductase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 8.3e-104, Sum P(2) = 8.3e-104
Identities = 117/272 (43%), Positives = 178/272 (65%)
Query: 419 SSPK-KDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAP 477
+SP+ K Y W++ S+R++L ++ + PS PP+ ++PRLQ RYYSI+SS +V P
Sbjct: 405 ASPEGKALYQSWVLDSERNILAILEDLPSLNPPID-HLCELLPRLQARYYSIASSSKVHP 463
Query: 478 SRIHVTCALVYE-KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAK 536
IH+ CA+V E T TGRV KG+ + W+K + + + P++VR+S F+LP
Sbjct: 464 HCIHI-CAVVIEYNTKTGRVFKGVATNWLKGKHVTDNGHKPT-VPMYVRRSQFRLPFKPS 521
Query: 537 VPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS 596
P+IMIGPGTG+APF GF+QER +E G ++G ++L+FGCR+ D++Y+ EL F ++
Sbjct: 522 NPVIMIGPGTGIAPFMGFIQERAWRKEQGKDVGETILYFGCRHSNEDFLYQQELEEFERA 581
Query: 597 GALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLH 655
G L+QL VAFSR+ K YVQH + + +W ++ ++ A++YVCGDA++MARDVH
Sbjct: 582 GVLTQLNVAFSRDQEQKVYVQHLLKKNKQQLWKLIHTDNAHIYVCGDARNMARDVHAAFS 641
Query: 656 TIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
I +++G L ++A K L GRY +DVW
Sbjct: 642 EIAEQEGRLTHTQALDYFKKLMTKGRYSQDVW 673
|
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| ZFIN|ZDB-GENE-030131-5767 zgc:63480 "zgc:63480" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
Identities = 112/272 (41%), Positives = 180/272 (66%)
Query: 419 SSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPS 478
S+ K +Y W++ S R+++ ++ + PS +PP+ ++PRLQ RYYSISSS +V P+
Sbjct: 407 SAEGKAQYQSWVLDSCRNIVAILEDLPSLRPPID-HLCELLPRLQARYYSISSSSKVHPN 465
Query: 479 RIHVTCALVYE-KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKV 537
IH+ CA+V E +T TGRV+KG+ + W+KN +P + + + P+++R+S F+LP +
Sbjct: 466 SIHI-CAVVVEYQTKTGRVNKGVATNWLKNKMPTDNGHKAT-VPMYIRKSQFRLPFKSTN 523
Query: 538 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 597
PIIMIGPGTG+APF GF+QER L+E G E+G ++L+FGCR++ D++Y++EL F ++G
Sbjct: 524 PIIMIGPGTGIAPFIGFIQERGWLKEQGKEVGETVLYFGCRHKNEDFLYQEELAQFEKTG 583
Query: 598 ALSQLIVAFSREGPTKE-YVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLH 655
L+ L A+ + YVQH + +W ++ ++ A++Y+CGDA++MARDV +
Sbjct: 584 VLTTLNGAYLLYSIFMQVYVQHHLKNNKEAVWKLVHTDNAHIYICGDARNMARDVQTAFY 643
Query: 656 TIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
I +E G + +A +K L GRY +DVW
Sbjct: 644 EIAEELGGMSRPQAVDYIKKLMTKGRYSQDVW 675
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P00389 | NCPR_RABIT | 1, ., 6, ., 2, ., 4 | 0.3594 | 0.8937 | 0.9042 | yes | no |
| P00388 | NCPR_RAT | 1, ., 6, ., 2, ., 4 | 0.3665 | 0.8922 | 0.9041 | yes | no |
| P36587 | NCPR_SCHPO | 1, ., 6, ., 2, ., 4 | 0.3255 | 0.8646 | 0.8761 | yes | no |
| P16603 | NCPR_YEAST | 1, ., 6, ., 2, ., 4 | 0.3042 | 0.8180 | 0.8133 | yes | no |
| Q55CT1 | REDB_DICDI | 1, ., 6, ., -, ., - | 0.3420 | 0.8937 | 0.9205 | yes | no |
| P04175 | NCPR_PIG | 1, ., 6, ., 2, ., 4 | 0.3610 | 0.9024 | 0.9144 | yes | no |
| Q9SUM3 | NCPR2_ARATH | 1, ., 6, ., 2, ., 4 | 0.7094 | 0.9723 | 0.9395 | yes | no |
| P16435 | NCPR_HUMAN | 1, ., 6, ., 2, ., 4 | 0.3565 | 0.9097 | 0.9231 | yes | no |
| Q4WM67 | NCPR_ASPFU | 1, ., 6, ., 2, ., 4 | 0.3436 | 0.8442 | 0.8345 | yes | no |
| P37116 | NCPR_VIGRR | 1, ., 6, ., 2, ., 4 | 0.6774 | 0.9315 | 0.9275 | N/A | no |
| Q05001 | NCPR_CATRO | 1, ., 6, ., 2, ., 4 | 0.7370 | 0.9854 | 0.9481 | N/A | no |
| P37040 | NCPR_MOUSE | 1, ., 6, ., 2, ., 4 | 0.3651 | 0.8922 | 0.9041 | yes | no |
| Q5BFT5 | NCPR_EMENI | 1, ., 6, ., 2, ., 4 | 0.3506 | 0.8340 | 0.8244 | yes | no |
| Q00141 | NCPR_ASPNG | 1, ., 6, ., 2, ., 4 | 0.3493 | 0.8413 | 0.8328 | yes | no |
| A2QS05 | NCPR_ASPNC | 1, ., 6, ., 2, ., 4 | 0.3487 | 0.8413 | 0.8316 | yes | no |
| Q3SYT8 | NCPR_BOVIN | 1, ., 6, ., 2, ., 4 | 0.3584 | 0.8820 | 0.8938 | yes | no |
| Q2UHA7 | NCPR_ASPOR | 1, ., 6, ., 2, ., 4 | 0.3415 | 0.8340 | 0.8244 | yes | no |
| Q27597 | NCPR_DROME | 1, ., 6, ., 2, ., 4 | 0.3639 | 0.8704 | 0.8807 | yes | no |
| P37039 | NCPR_CAVPO | 1, ., 6, ., 2, ., 4 | 0.3545 | 0.9053 | 0.9174 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 1.6.2.4 | 0.979 |
| 3rd Layer | 1.6.2 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00031360001 | SubName- Full=Chromosome chr11 scaffold_56, whole genome shotgun sequence; (709 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00024596001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (668 aa) | • | • | • | • | • | • | 0.906 | ||
 | GSVIVG00025889001 | SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (435 aa) | • | • | • | 0.615 | |||||
 | GSVIVG00008868001 | SubName- Full=Chromosome chr13 scaffold_210, whole genome shotgun sequence; (278 aa) | • | • | 0.583 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 687 | |||
| cd06204 | 416 | cd06204, CYPOR, NADPH cytochrome p450 reductase (C | 0.0 | |
| COG0369 | 587 | COG0369, CysJ, Sulfite reductase, alpha subunit (f | 1e-152 | |
| cd06199 | 360 | cd06199, SiR, Cytochrome p450- like alpha subunits | 1e-116 | |
| TIGR01931 | 597 | TIGR01931, cysJ, sulfite reductase [NADPH] flavopr | 1e-116 | |
| cd06207 | 382 | cd06207, CyPoR_like, NADPH cytochrome p450 reducta | 1e-112 | |
| cd06202 | 406 | cd06202, Nitric_oxide_synthase, The ferredoxin-red | 2e-94 | |
| cd06203 | 398 | cd06203, methionine_synthase_red, Human methionine | 1e-92 | |
| PRK06214 | 530 | PRK06214, PRK06214, sulfite reductase; Provisional | 5e-89 | |
| cd06206 | 384 | cd06206, bifunctional_CYPOR, These bifunctional pr | 1e-87 | |
| cd06182 | 267 | cd06182, CYPOR_like, NADPH cytochrome p450 reducta | 7e-85 | |
| pfam00667 | 217 | pfam00667, FAD_binding_1, FAD binding domain | 6e-83 | |
| PRK10953 | 600 | PRK10953, cysJ, sulfite reductase subunit alpha; P | 2e-77 | |
| pfam00258 | 142 | pfam00258, Flavodoxin_1, Flavodoxin | 4e-41 | |
| cd06200 | 245 | cd06200, SiR_like1, Cytochrome p450- like alpha su | 5e-38 | |
| cd00322 | 223 | cd00322, FNR_like, Ferredoxin reductase (FNR), an | 3e-30 | |
| cd06201 | 289 | cd06201, SiR_like2, Cytochrome p450- like alpha su | 6e-30 | |
| cd06208 | 286 | cd06208, CYPOR_like_FNR, These ferredoxin reductas | 4e-29 | |
| pfam00175 | 106 | pfam00175, NAD_binding_1, Oxidoreductase NAD-bindi | 8e-19 | |
| PLN03116 | 307 | PLN03116, PLN03116, ferredoxin--NADP+ reductase; P | 2e-16 | |
| TIGR03224 | 411 | TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reduc | 3e-12 | |
| PRK08105 | 149 | PRK08105, PRK08105, flavodoxin; Provisional | 1e-10 | |
| PLN03115 | 367 | PLN03115, PLN03115, ferredoxin--NADP(+) reductase; | 1e-09 | |
| COG0716 | 151 | COG0716, FldA, Flavodoxins [Energy production and | 2e-07 | |
| cd06211 | 238 | cd06211, phenol_2-monooxygenase_like, Phenol 2-mon | 9e-07 | |
| cd06182 | 267 | cd06182, CYPOR_like, NADPH cytochrome p450 reducta | 6e-06 | |
| PRK09267 | 169 | PRK09267, PRK09267, flavodoxin FldA; Validated | 1e-05 | |
| cd06216 | 243 | cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur bi | 2e-05 | |
| PRK09004 | 146 | PRK09004, PRK09004, FMN-binding protein MioC; Prov | 2e-05 | |
| COG4097 | 438 | COG4097, COG4097, Predicted ferric reductase [Inor | 4e-05 | |
| cd06209 | 228 | cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reduc | 4e-05 | |
| COG0543 | 252 | COG0543, UbiB, 2-polyprenylphenol hydroxylase and | 5e-05 | |
| cd06195 | 241 | cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase i | 1e-04 | |
| TIGR01752 | 167 | TIGR01752, flav_long, flavodoxin, long chain | 1e-04 | |
| PRK07308 | 146 | PRK07308, PRK07308, flavodoxin; Validated | 4e-04 | |
| cd06187 | 224 | cd06187, O2ase_reductase_like, The oxygenase reduc | 0.001 | |
| cd06184 | 247 | cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P) | 0.002 | |
| COG1018 | 266 | COG1018, Hmp, Flavodoxin reductases (ferredoxin-NA | 0.003 | |
| PRK06703 | 151 | PRK06703, PRK06703, flavodoxin; Provisional | 0.004 |
| >gnl|CDD|99801 cd06204, CYPOR, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Score = 571 bits (1475), Expect = 0.0
Identities = 197/423 (46%), Positives = 262/423 (61%), Gaps = 53/423 (12%)
Query: 311 DAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEAL 370
DA++P + VAV +EL T S DRSC H+EFDI+G+G+ Y+TGDH+ V+ N SE VE L
Sbjct: 1 DAKNPFLAPVAVSRELFTGS-DRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLL 59
Query: 371 SLLGLS-PDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPK------ 422
+LGL DT SL + E ++ FP P + RTAL Y D+ +
Sbjct: 60 KVLGLDDRDTVISLKSLDEP------ASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAA 113
Query: 423 ---------------------KDEYAQWIVASQRSLLEVMSEFPSAKP--PLGVFFAAIV 459
KDEYA+WIV R+LLEV+ +FPSAKP P F ++
Sbjct: 114 LAQFAPDPEEKERLLKLASEGKDEYAKWIVEPHRNLLEVLQDFPSAKPTPPPFDFLIELL 173
Query: 460 PRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPME------- 512
PRLQPRYYSISSS +V P+RIH+T +V TPTGR+ KG+ + W+ P
Sbjct: 174 PRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPT 233
Query: 513 --------KSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA 564
K S P+FVR+SNF+LP P+IMIGPGTG+APFRGF+QER AL+E+
Sbjct: 234 PYYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKES 293
Query: 565 GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKS 624
G ++GP+LLFFGCR+ D+IY+DEL + + G L +L+ AFSRE P K YVQH++ E +
Sbjct: 294 GKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHA 353
Query: 625 SDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLR 684
+W +++EGAY+YVCGDAK+MARDV +TL I+ EQG + ++AE VK L+ GRY
Sbjct: 354 EQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAEQGGMTETEAEEYVKKLKTRGRYQE 413
Query: 685 DVW 687
DVW
Sbjct: 414 DVW 416
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 416 |
| >gnl|CDD|223446 COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 452 bits (1164), Expect = e-152
Identities = 199/592 (33%), Positives = 299/592 (50%), Gaps = 59/592 (9%)
Query: 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIV 163
+ +T+ +G+QTG AEG A+ LA E A V +DDY ++ + +E ++
Sbjct: 47 NKPITVLYGSQTGNAEGLAEELAKELEA--AGLQVLVASLDDYKPKD------IAEERLL 98
Query: 164 FFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDE 223
F ++T G+GEP DNA F+++ +K L L+Y V GLG+ YE F + K D
Sbjct: 99 LFVVSTQGEGEPPDNAVAFHEFLKGKKAPK--LDGLRYAVLGLGDSSYEFFCQAGKDFDR 156
Query: 224 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISE 283
L GA RL P D Q E + WR+ V L + + + S
Sbjct: 157 RLQELGATRLFPRVEADV-QDFEAAAAPWRDDVLELLKSKFPGQEAAPAQVATSPQSESP 215
Query: 284 YRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIA 343
Y SV + ++L SD+ H+E D+
Sbjct: 216 YSKP-----APSVAI---------------------LLENRKLTGRDSDKDVRHIELDLP 249
Query: 344 GTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP 403
+GL YE GD +GV+ EN E V+E L LLGL P+ ++ + KS T
Sbjct: 250 DSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVDGETLPLVEALKSHFEFTSA 309
Query: 404 PCSLRTALTKYADLLSSPKKDEYAQWIVASQ-------RSLLEVMSEFPSAKPPLGVFFA 456
P SL L A + + + + R+L++V+ +FP AK P
Sbjct: 310 PKSLLENL---AHFAGQEELRRLLEQLDIADLQDYAKRRTLIDVLRDFPPAKLPAE-ELI 365
Query: 457 AIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSND 516
++P L+PR YSI+SSP V+P +H+T +V + GR G+CS ++ + L +
Sbjct: 366 DLLPPLKPRLYSIASSPGVSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEEGDT-- 422
Query: 517 CSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFF 575
P+FV+ NF+LP D + PIIMIGPGTG+APFR F+QER A G + LFF
Sbjct: 423 ---IPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFRAFVQERAANGAEGK----NWLFF 475
Query: 576 GCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGA 635
GCR+ D++Y++E +++ G L++L +AFSR+ K YVQ ++ E++ ++W L EGA
Sbjct: 476 GCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQEEKIYVQDRLREQADELWEWLEEGA 535
Query: 636 YLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
++YVCGDAK MA+DV L I+ ++G L +AE +K L+ GRY RDV+
Sbjct: 536 HIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY 587
|
Length = 587 |
| >gnl|CDD|99796 cd06199, SiR, Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Score = 351 bits (904), Expect = e-116
Identities = 146/376 (38%), Positives = 212/376 (56%), Gaps = 25/376 (6%)
Query: 320 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDT 379
V + L P S++ H+E D+ G+GL+YE GD +GVY N V+E L+ LGLS D
Sbjct: 2 VLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDE 61
Query: 380 YFSLHTDKEDGTPLGK---STLPPTFPPCSL---RTALTKYADLLSSPKKDEYAQWIVAS 433
S T PL + T +L A T +LL+ + +
Sbjct: 62 PVS--TVGGGTLPLREALIKHYEITTLLLALLESYAADTGALELLALAALEAVLAFAEL- 118
Query: 434 QRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALV-YEKTP 492
R +L+++ P+ ++ LQPR YSI+SSP+ P +H+T A+V YE
Sbjct: 119 -RDVLDLLPIPPARLTA--EELLDLLRPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH- 174
Query: 493 TGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPF 551
GR KG+ ST++ + L K D P+FV+ + +F+LP D PIIM+GPGTG+APF
Sbjct: 175 -GRERKGVASTFLADRL---KEGDT--VPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPF 228
Query: 552 RGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP 611
R FLQER A GA+ G + LFFG R+ D++Y+DEL +++ G L++L AFSR+
Sbjct: 229 RAFLQEREAT---GAK-GKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAFSRDQA 284
Query: 612 TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAES 671
K YVQ +M E+ +++W L EGA+ YVCGDAK MA+DV L I+ +G +D +AE+
Sbjct: 285 EKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEA 344
Query: 672 MVKNLQMTGRYLRDVW 687
+K L+ RY RDV+
Sbjct: 345 YLKELKKEKRYQRDVY 360
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. Length = 360 |
| >gnl|CDD|233643 TIGR01931, cysJ, sulfite reductase [NADPH] flavoprotein, alpha-component | Back alignment and domain information |
|---|
Score = 359 bits (924), Expect = e-116
Identities = 194/592 (32%), Positives = 305/592 (51%), Gaps = 62/592 (10%)
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVF 164
++VTI +G+QTG A AK LA++ A ++ DDY ++LKKE ++
Sbjct: 59 KRVTILYGSQTGNARRLAKRLAEKLEAA--GFSVRLSSADDYK------FKQLKKERLLL 110
Query: 165 FFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEI 224
++T G+GEP + A F+K+ +K L+ L+Y V GLG+ YE F + K D+
Sbjct: 111 LVISTQGEGEPPEEAISFHKFLHSKK--APKLENLRYSVLGLGDSSYEFFCQTGKDFDKR 168
Query: 225 LANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEY 284
L G KRL+P D D + + + WR V L+ + STP
Sbjct: 169 LEELGGKRLLP--RVDADLDYDANAAEWRAGVLTALNEQA-----KGSASTP-------- 213
Query: 285 RVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAG 344
S+ E + +VY Q+P R+ V +++ +S + H+E D+ G
Sbjct: 214 ----------SLSETPARSQTATSVYSKQNPFRAEVLENQKITGRNSKKDVRHIEIDLEG 263
Query: 345 TGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPP 404
+GL YE GD +GV+ +N V+E L LL L PD ++ PL L F
Sbjct: 264 SGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTI---GGKTIPL-FEALITHFEL 319
Query: 405 CSL-RTALTKYADLLSS-------PKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFA 456
+ L YA+L + ++ +I + L++++ ++P+
Sbjct: 320 TQNTKPLLEAYAELTGNKELKALIADNEKLKAYIQNTP--LIDLIRDYPADLDAEQ--LI 375
Query: 457 AIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSND 516
+++ L PR YSISSS +H+T +V GR G S ++ L K D
Sbjct: 376 SLLRPLTPRLYSISSSQSEVGDEVHLTVGVV-RYQAHGRARLGGASGFLAERL---KEGD 431
Query: 517 CSWAPIFV-RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFF 575
P+++ NF+LP D PIIMIGPGTG+APFR F+QER E GA+ G + LFF
Sbjct: 432 T--VPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQER---AEDGAK-GKNWLFF 485
Query: 576 GCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGA 635
G + D++Y+ E N+++ G L+++ +AFSR+ K YVQH++ E+ +++W L EGA
Sbjct: 486 GNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSRDQAEKIYVQHRIREQGAELWQWLQEGA 545
Query: 636 YLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
++YVCGDAK MA+DVH+ L I+ ++G LD+ +AE + +L++ RY RDV+
Sbjct: 546 HIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQRDVY 597
|
This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase. Length = 597 |
| >gnl|CDD|99803 cd06207, CyPoR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Score = 342 bits (879), Expect = e-112
Identities = 153/391 (39%), Positives = 216/391 (55%), Gaps = 41/391 (10%)
Query: 324 KELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSL 383
K L DRS H+EFD+ G+GL+YETGD++G+Y EN V+E L+ LGL D +
Sbjct: 6 KRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRV 65
Query: 384 HTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKK----------------DEY 426
++ + PP FP P S+R L K+ D+ P K ++
Sbjct: 66 EPNE------QQRGKPP-FPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDL 118
Query: 427 AQWIVASQRS---------LLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAP 477
+ R+ LEV+ +FPS +P L + P ++PRYYSISSSP P
Sbjct: 119 YKLASREGRTEYKRYEKYTYLEVLKDFPSVRPTLE-QLLELCPLIKPRYYSISSSPLKNP 177
Query: 478 SRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKV 537
+ +H+ +LV KTP+GR GLCS+++ +F+++S+FKLP D K
Sbjct: 178 NEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKV------GQRVTVFIKKSSFKLPKDPKK 231
Query: 538 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 597
PIIM+GPGTGLAPFR FLQER AL G E+GP LL+FGCR+ DY+Y++EL + +SG
Sbjct: 232 PIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSG 291
Query: 598 ALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGA-YLYVCGDAKSMARDVHRTLHT 656
L+ L AFSR+ P K YVQ + E S ++ +L EGA +YVCG M DV
Sbjct: 292 VLTTLGTAFSRDQPKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEE 351
Query: 657 IVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
I+++ G D AE ++ L+ GRY+ + W
Sbjct: 352 ILKKHGGGDEELAEKKIEELEERGRYVVEAW 382
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 382 |
| >gnl|CDD|99799 cd06202, Nitric_oxide_synthase, The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain | Back alignment and domain information |
|---|
Score = 298 bits (764), Expect = 2e-94
Identities = 152/408 (37%), Positives = 212/408 (51%), Gaps = 49/408 (12%)
Query: 320 VAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCENLSETVEEALSLL--GLS 376
V R+ L +P S RS ++ D G L Y+ GDHVG++ N E V+ L L
Sbjct: 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPP 61
Query: 377 PDTYFSLHTDKEDGTPLG-KSTLPP--TFPPCSLRTALTKYADLLSSPKK---------- 423
PD L +E T LG T P PPC+LR ALT+Y D+ + P
Sbjct: 62 PDQVIKLEVLEERSTALGIIKTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLA 121
Query: 424 ----------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYY 467
EY W ++LEV+ EFPS + P + + P LQPRYY
Sbjct: 122 TDEKDKERLEVLGKGSSEYEDWKWYKNPNILEVLEEFPSLQVPASLLLTQL-PLLQPRYY 180
Query: 468 SISSSPRVAPSRIHVTCALVYEKTPTGR--VHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525
SISSSP + P IH+T A+V +T G+ VH G+CSTW+ P + P FVR
Sbjct: 181 SISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDT------VPCFVR 234
Query: 526 Q-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQER----FALQEAGAELGPSLLFFGCRNR 580
+F LP D VP+IM+GPGTG+APFR F Q+R ++ G + G LFFGCRN
Sbjct: 235 SAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNS 294
Query: 581 KMDYIYEDELNNFVQSGALSQLIVAFSRE-GPTKEYVQHKMMEKSSDIWNML-SEGAYLY 638
+D IY++E G L+++ A SRE G K YVQ + E++ +++ L EG ++Y
Sbjct: 295 TIDDIYKEETEEAKNKGVLTEVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIY 354
Query: 639 VCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDV 686
VCGD +MA DV +T+ I+ E G++ + +AE + L+ RY D+
Sbjct: 355 VCGDV-TMAEDVSQTIQRILAEHGNMSAEEAEEFILKLRDENRYHEDI 401
|
The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation. Length = 406 |
| >gnl|CDD|99800 cd06203, methionine_synthase_red, Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate | Back alignment and domain information |
|---|
Score = 293 bits (751), Expect = 1e-92
Identities = 137/389 (35%), Positives = 205/389 (52%), Gaps = 49/389 (12%)
Query: 338 LEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSP--DTYFSLHTDKEDGTPLGK 395
L D++ TG Y+ GD +G+ N + VE L LGL D + +
Sbjct: 20 LTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVP-NTKKKN- 77
Query: 396 STLPPTFP-PCSLRTALTKYADLLSSPKK----------------------------DEY 426
+ +P P +LRT LT D+ + PKK ++Y
Sbjct: 78 AKVPVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDY 137
Query: 427 AQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCAL 486
++ SLL+++ FPS +PPL + + PRLQPR YSI+SSP P ++ ++
Sbjct: 138 TDFVRKRGLSLLDLLEAFPSCRPPLSLLIEHL-PRLQPRPYSIASSPLEGPGKLRFIFSV 196
Query: 487 VYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN-FKLPAD-AKVPIIMIGP 544
V GLC++W+++ S+ P ++R S+ F+LP D + PIIM+GP
Sbjct: 197 VEFPAK------GLCTSWLESLCLSASSHGVKV-PFYLRSSSRFRLPPDDLRRPIIMVGP 249
Query: 545 GTGLAPFRGFLQERFALQEA--GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 602
GTG+APF GFLQ R L+E+ G + LFFGCR+R DY++ DEL F++ G L++L
Sbjct: 250 GTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILTRL 309
Query: 603 IVAFSRE---GPTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIV 658
IVAFSR+ G T +YVQ K+ E+ + ++L A +YVCGDAK MA+DV T I+
Sbjct: 310 IVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDIL 369
Query: 659 QEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
++ LD +A+ ++ L+ RYL DVW
Sbjct: 370 SKELGLDKLEAKKLLARLRKEDRYLEDVW 398
|
In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 398 |
| >gnl|CDD|235745 PRK06214, PRK06214, sulfite reductase; Provisional | Back alignment and domain information |
|---|
Score = 287 bits (737), Expect = 5e-89
Identities = 144/422 (34%), Positives = 207/422 (49%), Gaps = 60/422 (14%)
Query: 291 NADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYE 350
A A+ A G +P + R+ L+ P S++ H+E D+AG+GL YE
Sbjct: 144 PAAAAADAAPAAAALGPLGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYE 203
Query: 351 TGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTA 410
GD +G++ N V+ ++ LG P+ P+G TL R A
Sbjct: 204 VGDSLGLFPANDPALVDAVIAALGAPPEF------------PIGGKTL---------REA 242
Query: 411 LTKYADLLSSPKKDEYAQWIV-----------------------ASQRSLLEVMSEFPSA 447
L + L +P D + + A+ +L + +FP
Sbjct: 243 LLEDVSLGPAP--DGLFELLSYITGGAARKKARALAAGEDPDGDAATLDVLAALEKFPGI 300
Query: 448 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALV-YEKTPTGRVHKGLCSTWMK 506
+P F A+ P LQPR YSISSSP+ P R+ +T V YE R+ G+ ST++
Sbjct: 301 RPDPEAFVEALDP-LQPRLYSISSSPKATPGRVSLTVDAVRYEIG--SRLRLGVASTFLG 357
Query: 507 NSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG 565
L ++V+++ F LPAD PIIM+GPGTG+APFR FL ER A + G
Sbjct: 358 ERLAPGTR-----VRVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAATKAPG 412
Query: 566 AELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSS 625
+ LFFG + D+ YEDELN +G L++L +A+SR+G K YVQ +M E +
Sbjct: 413 R----NWLFFGHQRSATDFFYEDELNGLKAAGVLTRLSLAWSRDGEEKTYVQDRMRENGA 468
Query: 626 DIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRD 685
++W L EGA+ YVCGDAK MA+DV R L IV + G +A + V L+ GRY D
Sbjct: 469 ELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAGRYQAD 528
Query: 686 VW 687
V+
Sbjct: 529 VY 530
|
Length = 530 |
| >gnl|CDD|99802 cd06206, bifunctional_CYPOR, These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR) | Back alignment and domain information |
|---|
Score = 279 bits (716), Expect = 1e-87
Identities = 134/395 (33%), Positives = 199/395 (50%), Gaps = 39/395 (9%)
Query: 320 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDT 379
V +EL P S HLE + G+TY GD++ V N E V AL GL+ DT
Sbjct: 2 VVENRELTAPGVGPSKRHLELRLP-DGMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDT 60
Query: 380 YFSLHTDKEDGT-PLGK--------STLPPTFPPCSLRTALTKYAD---------LLSSP 421
++ PLG S+ P + R L A+ LL
Sbjct: 61 VLTISASGSATGLPLGTPISVSELLSSYVELSQPAT-RRQLAALAEATRCPDTKALLERL 119
Query: 422 KKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIH 481
+ YA ++A + S+L+++ FPS PL F A++P ++PR YSISSSP V P
Sbjct: 120 AGEAYAAEVLAKRVSVLDLLERFPSIALPLATF-LAMLPPMRPRQYSISSSPLVDPGHAT 178
Query: 482 VTCALVYEKTPTGRV-HKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN--FKLPADAKVP 538
+T +++ +G+ ++G+ S+++ + P + + VR S+ F+ P+D P
Sbjct: 179 LTVSVLDAPALSGQGRYRGVASSYLSSLRPGDS------IHVSVRPSHSAFRPPSDPSTP 232
Query: 539 IIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 598
+IMI GTGLAPFRGFLQER AL G +L P+LLFFGCR+ D +Y DEL + +G
Sbjct: 233 LIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGV 292
Query: 599 LSQLIVAFSR--EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656
+S + A+SR G + YVQ ++ + ++W + +GA +YVCGD + MA V L
Sbjct: 293 VS-VRRAYSRPPGGGCR-YVQDRLWAEREEVWELWEQGARVYVCGDGR-MAPGVREVLKR 349
Query: 657 IVQEQGSLDS-SKAESMVKNLQM---TGRYLRDVW 687
I E+ S E + L+ GRY DV+
Sbjct: 350 IYAEKDERGGGSDDEEAEEWLEELRNKGRYATDVF 384
|
NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 384 |
| >gnl|CDD|99779 cd06182, CYPOR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 7e-85
Identities = 113/235 (48%), Positives = 154/235 (65%), Gaps = 10/235 (4%)
Query: 457 AIVP--RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKS 514
++P LQPRYYSI+SSP V P +H+ +V + P GR+ KG+CS ++ K
Sbjct: 39 GVIPPNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLGAK- 97
Query: 515 NDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLL 573
+F+R + +F+LP D PIIM+GPGTG+APFRGFLQER AL+ G GP+ L
Sbjct: 98 -----VTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWL 152
Query: 574 FFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT-KEYVQHKMMEKSSDIWNMLS 632
FFGCRN DY+Y +EL ++ GAL++L VAFSRE K YVQ K+ E + ++ +L+
Sbjct: 153 FFGCRNFASDYLYREELQEALKDGALTRLDVAFSREQAEPKVYVQDKLKEHAEELRRLLN 212
Query: 633 EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
EGA++YVCGDAKSMA+DV L I+ + G +D S AE +K L+ GRY+ DVW
Sbjct: 213 EGAHIYVCGDAKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW 267
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 267 |
| >gnl|CDD|216051 pfam00667, FAD_binding_1, FAD binding domain | Back alignment and domain information |
|---|
Score = 261 bits (668), Expect = 6e-83
Identities = 98/223 (43%), Positives = 126/223 (56%), Gaps = 35/223 (15%)
Query: 310 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEA 369
+DA++P ++V V +EL +P SDRSC HLE DI+G+GL Y+TGDH+GVY N E VEE
Sbjct: 2 FDAKNPFLASVVVNRELTSPGSDRSCIHLELDISGSGLRYQTGDHLGVYPSNDEELVEEL 61
Query: 370 LSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPK------- 422
L LLGL PDT SL E P PP +LR ALT Y ++ P
Sbjct: 62 LELLGLDPDTVVSLEALDER------WVKHPFPPPTTLRQALTYYLEITGPPTKQLLEAL 115
Query: 423 ---------------------KDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPR 461
K EY +W + R+LLEV+ EFPSA+ P F ++PR
Sbjct: 116 AQYASDEEEKQRLEKLSSDAGKQEYKEWKLNKARTLLEVLEEFPSAQLPAE-FLLELLPR 174
Query: 462 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW 504
LQPRYYSISSSP+V P+ +HVT +V +T GR+ KG+ S W
Sbjct: 175 LQPRYYSISSSPKVHPNEVHVTVVVVEYETGEGRIRKGVASNW 217
|
This domain is found in sulfite reductase, NADPH cytochrome P450 reductase, Nitric oxide synthase and methionine synthase reductase. Length = 217 |
| >gnl|CDD|182862 PRK10953, cysJ, sulfite reductase subunit alpha; Provisional | Back alignment and domain information |
|---|
Score = 259 bits (663), Expect = 2e-77
Identities = 179/609 (29%), Positives = 295/609 (48%), Gaps = 96/609 (15%)
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKK---EN 161
+T+ +QTG A A+ L D+ A K +V+ DY K K+ E
Sbjct: 62 PGITLISASQTGNARRVAEQLRDDLLAA--KLNVNLVNAGDY---------KFKQIAQEK 110
Query: 162 IVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVV 221
++ +T G+GEP + A +K+ +K L+ + VFGLG+ YE F + K
Sbjct: 111 LLIVVTSTQGEGEPPEEAVALHKFLFSKK--APKLENTAFAVFGLGDTSYEFFCQAGKDF 168
Query: 222 DEILANQGAKRLVP-VGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAA 280
D LA GA+RL+ V D D + S WR V L + V+ P +
Sbjct: 169 DSKLAELGAERLLDRV---DADVEYQAAASEWRARVVDALKSRA------PAVAAPSQSV 219
Query: 281 ISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEF 340
A +V E + Y + P ++++V +++ +S++ H+E
Sbjct: 220 -----------ATGAVNEIH------TSPYSKEAPLTASLSVNQKITGRNSEKDVRHIEI 262
Query: 341 DIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPP 400
D+ +GL Y+ GD +GV+ +N V+E + LL L D ++ GK TLP
Sbjct: 263 DLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVD---------GK-TLP- 311
Query: 401 TFPPCSLRTALTKYADLL--SSPKKDEYAQWIVASQRSLLEV------------------ 440
L AL + +L ++ + YA + +LL +
Sbjct: 312 ------LAEALQWHFELTVNTANIVENYA--TLTRSETLLPLVGDKAALQHYAATTPIVD 363
Query: 441 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALV-YEKTPTGRVHKG 499
M F A+ + P L PR YSI+SS + +H+T +V Y+ GR G
Sbjct: 364 MVRFAPAQLDAEQLIGLLRP-LTPRLYSIASSQAEVENEVHITVGVVRYDIE--GRARAG 420
Query: 500 LCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQER 558
S+++ + L E+ + +F+ + NF+LPA+ + P+IMIGPGTG+APFR F+Q+R
Sbjct: 421 GASSFLADRL--EEEGEVR---VFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQR 475
Query: 559 FALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQH 618
A GA G + LFFG + D++Y+ E +V+ G L+++ +A+SR+ K YVQ
Sbjct: 476 AA---DGAP-GKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKEKIYVQD 531
Query: 619 KMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQM 678
K+ E+ +++W +++GA++YVCGDA MA+DV + L ++ E G +D+ A+ + L++
Sbjct: 532 KLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRV 591
Query: 679 TGRYLRDVW 687
RY RDV+
Sbjct: 592 ERRYQRDVY 600
|
Length = 600 |
| >gnl|CDD|215823 pfam00258, Flavodoxin_1, Flavodoxin | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 4e-41
Identities = 62/149 (41%), Positives = 84/149 (56%), Gaps = 12/149 (8%)
Query: 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLA 168
IF+G+QTG E A+ALA+ + + VV +DD + E+ + +E++V F +
Sbjct: 1 IFYGSQTGNTEKLAEALAEGLKEAGFEV--VVVSLDDVDETEE-----ILEEDLVLFVTS 53
Query: 169 TYGDGEPTDNAARFYKWFTEQKEG--GEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILA 226
TYGDGEP DNA F W G L L+Y VFGLG+ YE F AK +DE LA
Sbjct: 54 TYGDGEPPDNAKPFEDWLLLFGLPLEGGDLSGLRYAVFGLGDSGYEGFCWAAKKLDEKLA 113
Query: 227 NQGAKRLVPVGLGDDD---QCIEDDFSAW 252
GAKR+ P+G GD+D +E+ F AW
Sbjct: 114 ELGAKRVGPLGEGDEDTQEDDLEEAFEAW 142
|
Length = 142 |
| >gnl|CDD|99797 cd06200, SiR_like1, Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 5e-38
Identities = 77/238 (32%), Positives = 109/238 (45%), Gaps = 36/238 (15%)
Query: 456 AAIVPR--LQPRYYSISSSPRVAPSRIHVTCALVYEKT-PTGRVHKGLCSTWMKNSLPME 512
A I PR L R YSI+S P+ + LV + G + GL S W+ P+
Sbjct: 38 AEIGPRHPLPHREYSIAS----LPADGAL-ELLVRQVRHADGGL--GLGSGWLTRHAPI- 89
Query: 513 KSNDCSWAPI---FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELG 569
A + F LP D P+I+IG GTGLA R L+ R A A
Sbjct: 90 ------GASVALRLRENPGFHLPDDG-RPLILIGNGTGLAGLRSHLRAR-----ARAGRH 137
Query: 570 PSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWN 629
+ L FG R D+ +EL + +G L++L +AFSR+ K YVQ ++ + ++
Sbjct: 138 RNWLLFGERQAAHDFFCREELEAWQAAGHLARLDLAFSRDQAQKRYVQDRLRAAADELRA 197
Query: 630 MLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
++EGA +YVCG + MA V L I+ E V+ L GRY RDV+
Sbjct: 198 WVAEGAAIYVCGSLQGMAPGVDAVLDEIL----------GEEAVEALLAAGRYRRDVY 245
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 245 |
| >gnl|CDD|99778 cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 3e-30
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 25/203 (12%)
Query: 454 FFAAIVPRLQPRYYSISSSPRVAPS-RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPME 512
R R YSI+SSP + V V G S W+ + P +
Sbjct: 31 LHLPGDGRGLRRAYSIASSPDEEGELELTV-----------KIVPGGPFSAWLHDLKPGD 79
Query: 513 KSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSL 572
+ + +F LP + P+++I G G+ PFR L+ A G
Sbjct: 80 E------VEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAAD----KPGGEIT 129
Query: 573 LFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNML- 631
L +G R D ++ DEL + G +L++A SRE K ++ ++ + +
Sbjct: 130 LLYGARTPA-DLLFLDELEELAKEGPNFRLVLALSRESEAKLGPGGRIDREAEILALLPD 188
Query: 632 SEGAYLYVCGDAKSMARDVHRTL 654
GA +Y+CG +MA+ V L
Sbjct: 189 DSGALVYICGPP-AMAKAVREAL 210
|
FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 223 |
| >gnl|CDD|99798 cd06201, SiR_like2, Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 6e-30
Identities = 75/227 (33%), Positives = 114/227 (50%), Gaps = 40/227 (17%)
Query: 464 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVH-KGLCSTWMKNSLPMEKSNDCSWAPI 522
PR+YS++SS I V R H GLCS ++ + L K D A
Sbjct: 100 PRFYSLASSSSDGFLEICV------------RKHPGGLCSGYL-HGL---KPGDTIKA-- 141
Query: 523 FVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRK 581
F+R +F+ A P+I+IG GTG+AP GF++ A + P L++G R+
Sbjct: 142 FIRPNPSFRPAKGAA-PVILIGAGTGIAPLAGFIRANAARR-------PMHLYWGGRDPA 193
Query: 582 MDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCG 641
D++YEDEL+ ++ G L+QL AFSR P YVQ ++ + + ++ +GA + VCG
Sbjct: 194 SDFLYEDELDQYLADGRLTQLHTAFSR-TPDGAYVQDRLRADAERLRRLIEDGAQIMVCG 252
Query: 642 DAKSMARDVHRTLHTI-VQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
+++MA+ V L I + SLD K + GRY DV+
Sbjct: 253 -SRAMAQGVAAVLEEILAPQPLSLDELKLQ---------GRYAEDVY 289
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 289 |
| >gnl|CDD|99804 cd06208, CYPOR_like_FNR, These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 4e-29
Identities = 73/231 (31%), Positives = 102/231 (44%), Gaps = 31/231 (13%)
Query: 464 PRYYSISSSPRVAPSRIHVTCAL-----VYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCS 518
R YSI+SS R T +L VY T KG+CS ++ + P +
Sbjct: 64 LRLYSIASS-RYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDD----- 117
Query: 519 WAPIFVR-----QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSL- 572
V+ LP D +IMI GTG+APFR FL+ F + A +
Sbjct: 118 -----VQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAW 172
Query: 573 LFFGCRNRKMDYIYEDELNNFV-QSGALSQLIVAFSREGP----TKEYVQHKMMEKSSDI 627
LFFG N +Y+DEL + Q ++ AFSRE K YVQ ++ E + +I
Sbjct: 173 LFFGVPNSD-SLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEI 231
Query: 628 WNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQ 677
WN+L + ++Y+CG K M V L T V E G ES+ K +
Sbjct: 232 WNLLDKDNTHVYICG-LKGMEPGVDDAL-TSVAEGGLAWEEFWESLKKKGR 280
|
Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. CYPOR serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases, sulfite reducatase, and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal FNR-like FAD and NAD binding module, an FMN-binding domain, and an additional connecting domain (inserted within the FAD binding region) that orients the FNR and FMN -binding domains. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 286 |
| >gnl|CDD|215769 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 8e-19
Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 14/116 (12%)
Query: 541 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS 600
MI GTG+AP L+ ++ L +G R D + +EL + +
Sbjct: 1 MIAGGTGIAPLYSVLKALLEDEDG----TEVYLVYGNRTED-DLLLREELEELAKK-YPN 54
Query: 601 QLIVAFSREGPTKE----YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHR 652
+VA SR YV ++E+ +YVCG M + V +
Sbjct: 55 LKVVAVSRTDDGWYGRKGYVTDALLEEHLSE---DLGDTDVYVCG-PPPMMKAVRK 106
|
Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity. Length = 106 |
| >gnl|CDD|215586 PLN03116, PLN03116, ferredoxin--NADP+ reductase; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 2e-16
Identities = 71/232 (30%), Positives = 108/232 (46%), Gaps = 29/232 (12%)
Query: 464 PRYYSISSSPRVAPSRIHVTCAL-----VYEKTPTGRV---HKGLCSTWMKNSLPMEKSN 515
R YSI+S+ R T +L VY TG+ KG+CS ++ ++ P +K
Sbjct: 81 VRLYSIAST-RYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDK-- 137
Query: 516 DCSWAPIFVRQSNFK---LPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAEL-GP 570
+ + + K LP D IM+ GTG+APFRGFL+ F + G
Sbjct: 138 ------VQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGL 191
Query: 571 SLLFFGCRNRKMDYIYEDELNNFVQSGALS-QLIVAFSREGPTKE----YVQHKMMEKSS 625
+ LF G N +Y+DE +++ + + A SRE K+ YVQ K+ E S
Sbjct: 192 AWLFLGVANSD-SLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSD 250
Query: 626 DIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQ 677
+I+ +L GA++Y CG K M + TL + +E+G K + KN Q
Sbjct: 251 EIFKLLDNGAHIYFCG-LKGMMPGIQDTLKRVAEERGESWEEKLSGLKKNKQ 301
|
Length = 307 |
| >gnl|CDD|132268 TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reductase, BoxA protein | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 3e-12
Identities = 46/145 (31%), Positives = 65/145 (44%), Gaps = 21/145 (14%)
Query: 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIY 586
S F +P + I+MI GTG AP R + R ++ G E G +LFFG R ++
Sbjct: 258 STFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG-EGGKLMLFFGARTKE----- 311
Query: 587 EDELNNFVQSGALSQLI-------VAFSRE-GPTKEYVQHKMMEKSSDIWNML-SEGAYL 637
EL F G L +L AFSR K YVQ + E+++D+ +L Y+
Sbjct: 312 --ELPYF---GPLQKLPKDFIDINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYI 366
Query: 638 YVCGDAKSMARDVHRTLHTIVQEQG 662
Y+CG K M V + G
Sbjct: 367 YICG-LKGMEEGVLDAFRDVCATNG 390
|
Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB [Energy metabolism, Other]. Length = 411 |
| >gnl|CDD|181230 PRK08105, PRK08105, flavodoxin; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-10
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARAR-YDKAIFKVVDIDDYADEEDEYEEKLKKENIVF 164
KV IF GT G A A+ A+ ++ +F+ ++ D+ +DE V
Sbjct: 3 KVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSDWQPYQDEL---------VL 53
Query: 165 FFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEI 224
+T G G+ D+ F K+ + L+YGV LG+ Y++F K D +
Sbjct: 54 VVTSTTGQGDLPDSIV---PLFQALKDTAGYQPNLRYGVIALGDSSYDNFCGAGKQFDAL 110
Query: 225 LANQGAKRLVPV 236
L QGAKR+
Sbjct: 111 LQEQGAKRVGER 122
|
Length = 149 |
| >gnl|CDD|215585 PLN03115, PLN03115, ferredoxin--NADP(+) reductase; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 19/209 (9%)
Query: 465 RYYSISSSP--RVAPSRIHVTCA--LVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 520
R YSI+SS S+ C LVY G + KG+CS ++ + P +
Sbjct: 146 RLYSIASSALGDFGDSKTVSLCVKRLVYTND-QGEIVKGVCSNFLCDLKPGAEVKIT--G 202
Query: 521 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAEL-GPSLLFFGCRN 579
P+ +P D IIM+ GTG+APFR FL + F + + G + LF G
Sbjct: 203 PV---GKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPT 259
Query: 580 RKMDYIYEDELNNFVQSGALS-QLIVAFSREGPT----KEYVQHKMMEKSSDIWNML-SE 633
+Y++E + + +L A SRE K Y+Q +M E + ++W +L +
Sbjct: 260 SS-SLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKD 318
Query: 634 GAYLYVCGDAKSMARDVHRTLHTIVQEQG 662
Y+Y+CG K M + + + ++ + G
Sbjct: 319 NTYVYMCG-LKGMEKGIDDIMVSLAAKDG 346
|
Length = 367 |
| >gnl|CDD|223788 COG0716, FldA, Flavodoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKV-VDIDDYADEEDEYEEKLKKENIVF 164
K+ I +G++TG E A+ +A+E A F+V +DI ++ +
Sbjct: 3 KILIVYGSRTGNTEKVAEIIAEELGA----DGFEVDIDIRPGIKDDLLESYD-----ELL 53
Query: 165 FFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQK--LKYGVFGLGNRQYE-HFNKIAKVV 221
T+G GE D+ F E E + VFGLG++ Y +F +
Sbjct: 54 LGTPTWGAGELPDDWYDFI-------EELEPIDFKGKLVAVFGLGDQSYYGYFCEAGGNF 106
Query: 222 DEILANQGAK--RLVPV-GLGDDDQCIEDDFSA---WRELVWPEL 260
++IL +GAK ++ G D E+D W + + EL
Sbjct: 107 EDILEEKGAKAVGILETLGYIFDASPNEEDEKRIKEWVKQILNEL 151
|
Length = 151 |
| >gnl|CDD|99807 cd06211, phenol_2-monooxygenase_like, Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 9e-07
Identities = 46/154 (29%), Positives = 58/154 (37%), Gaps = 30/154 (19%)
Query: 463 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSND-----C 517
R +SI+SSP A I + LV T VHK L K D
Sbjct: 51 GTRAFSIASSPSDAGE-IELHIRLVPGGIATTYVHKQL------------KEGDELEISG 97
Query: 518 SWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGC 577
+ FVR S + PII I G+GL+ R + L E G LFFG
Sbjct: 98 PYGDFFVRDS-------DQRPIIFIAGGSGLSSPRSMI---LDLLERGDTR-KITLFFGA 146
Query: 578 RNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP 611
R R + Y DE + + + A SRE P
Sbjct: 147 RTRA-ELYYLDEFEALEKDHPNFKYVPALSREPP 179
|
This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases. Length = 238 |
| >gnl|CDD|99779 cd06182, CYPOR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 319 NVAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCEN 361
+ V ++L P S RS HLEFD++G + L Y+ GDH+GV N
Sbjct: 1 AITVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN 44
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 267 |
| >gnl|CDD|236439 PRK09267, PRK09267, flavodoxin FldA; Validated | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ IFFG+ TG E AK + + K + VVDI A +ED + +++
Sbjct: 3 KIGIFFGSDTGNTEDIAKMIQKK----LGKDVADVVDIAK-ASKED-----FEAYDLLIL 52
Query: 166 FLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDE 223
+ T+G GE + F E G+ K +FGLG+++ Y E+F + +
Sbjct: 53 GIPTWGYGELQCDWDDFLPELEEIDFSGK-----KVALFGLGDQEDYAEYFCDAMGTLYD 107
Query: 224 ILANQGAK 231
I+ +GA
Sbjct: 108 IVEPRGAT 115
|
Length = 169 |
| >gnl|CDD|99812 cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 19/130 (14%)
Query: 461 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 520
R YS+SSSP I +T P G V S W+ +
Sbjct: 61 VRHWRSYSLSSSPTQEDGTITLTVK----AQPDGLV-----SNWL-----VNHLAPGDVV 106
Query: 521 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 580
+ Q +F LP +++I G+G+ P L+ + A++ LL++
Sbjct: 107 ELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRT-LLARGPTADV--VLLYYARTRE 163
Query: 581 KMDYIYEDEL 590
D I+ DEL
Sbjct: 164 --DVIFADEL 171
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 243 |
| >gnl|CDD|181608 PRK09004, PRK09004, FMN-binding protein MioC; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-05
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQ 228
T+G G+ DN F++ EQK L ++++ G+G+ +Y+ F ++++L +
Sbjct: 56 THGAGDLPDNLQPFFEELQEQKPD---LSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAK 112
Query: 229 GAKRLVP 235
GAK++
Sbjct: 113 GAKQIGE 119
|
Length = 146 |
| >gnl|CDD|226582 COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 13/116 (11%)
Query: 540 IMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 599
+ I G G+ PF L A + P + F C + +Y +EL Q
Sbjct: 319 VWIAGGIGITPFISMLFT-----LAERKSDPPVHLFYCSRNWEEALYAEELRALAQKLPN 373
Query: 600 SQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLH 655
L + S + Y+ + +E+ D ++ CG M + R L
Sbjct: 374 VVLHIIDSSKDG---YLDQEDLERYPD----RPRTRSVFFCG-PIKMMDSLRRDLK 421
|
Length = 438 |
| >gnl|CDD|99805 cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 13/107 (12%)
Query: 538 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS- 596
P++M+ GTGLAPF L L E G+ P L +G R D + D L +
Sbjct: 104 PLLMLAGGTGLAPFLSMLD---VLAEDGSAH-PVHLVYGV-TRDADLVELDRLEALAERL 158
Query: 597 GALSQLIVAFS--REGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCG 641
S V P K YV + + ++ +Y+CG
Sbjct: 159 PGFSFRTVVADPDSWHPRKGYVTDHLEAE-----DLNDGDVDVYLCG 200
|
Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group. Length = 228 |
| >gnl|CDD|223617 COG0543, UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 53/219 (24%), Positives = 85/219 (38%), Gaps = 40/219 (18%)
Query: 437 LLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPS-RIHVTCALVYEKTPTGR 495
LL + F + G F VP R YS++S+P +H+ VYE
Sbjct: 24 LLRLRLPFVALTFKPGQFVMLRVPGGVRRPYSLASAPDDKGELELHIR---VYEV----- 75
Query: 496 VHKGLCSTWMKNSLPMEKSNDCSWAPIFVR--QSNFKLPADAKVPIIMIGPGTGLAPFRG 553
G + ++ K D I VR N L P+++I GTG+AP
Sbjct: 76 ---GKVTKYIFG----LKEGD----KIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYA 124
Query: 554 FLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT- 612
+E L+E G + L +G R K D + DEL + + + +G
Sbjct: 125 IAKE---LKEKG-DANKVTLLYGARTAK-DLLLLDELEELA-----EKEVHPVTDDGWKG 174
Query: 613 -KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDV 650
K +V ++++ D E +Y+CG +M + V
Sbjct: 175 RKGFVTTDVLKELLD-----LEVDDVYICG-PPAMVKAV 207
|
Length = 252 |
| >gnl|CDD|99792 cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 539 IIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 598
+ ++ GTG+APF L++ E +L G R + + Y+DE+ +
Sbjct: 104 LWLLATGTGIAPFLSMLRD----LEIWERFDKIVLVHGVRYAE-ELAYQDEIEALAKQYN 158
Query: 599 LSQLIV--AFSRE-------GPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD 649
+ SRE G + ++ +E+ + + E +++ +CG+ + M D
Sbjct: 159 -GKFRYVPIVSREKENGALTGRIPDLIESGELEEHAG-LPLDPETSHVMLCGNPQ-MIDD 215
Query: 650 VHRTL 654
L
Sbjct: 216 TQELL 220
|
Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 241 |
| >gnl|CDD|233558 TIGR01752, flav_long, flavodoxin, long chain | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 19/129 (14%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDD-YADEEDEYEEKLKKENIVF 164
K+ IF+GT TG EG A+ + E + V +I ++ + Y+ +
Sbjct: 1 KIGIFYGTDTGNTEGIAEKIQKE----LGEDDVDVFNIAKASKEDLNAYD-------KLI 49
Query: 165 FFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGN-RQY-EHFNKIAKVVD 222
T+G GE ++ F E G+ +FGLG+ Y E F ++
Sbjct: 50 LGTPTWGVGELQEDWEDFLPTLEELDFTGK-----TVALFGLGDQEGYSETFCDGMGILY 104
Query: 223 EILANQGAK 231
+ + +GAK
Sbjct: 105 DKIKARGAK 113
|
Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli [Energy metabolism, Electron transport]. Length = 167 |
| >gnl|CDD|180922 PRK07308, PRK07308, flavodoxin; Validated | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 18/142 (12%)
Query: 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD-EEDEYEEKLKKENIVFFFL 167
I + + TG E A +AD+ R + VD+D+ + ++E+ +I
Sbjct: 6 IVYASMTGNTEEIADIVADKLRE-----LGHDVDVDECTTVDASDFEDA----DIAIVAT 56
Query: 168 ATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILAN 227
TYGDGE D FY+ + G+ YGV G G+ Y++F K + A
Sbjct: 57 YTYGDGELPDEIVDFYEDLADLDLSGK-----IYGVVGSGDTFYDYFCKSVDDFEAQFAL 111
Query: 228 QGAKR---LVPVGLGDDDQCIE 246
GA + V V L +D+ IE
Sbjct: 112 TGATKGAESVKVDLAAEDEDIE 133
|
Length = 146 |
| >gnl|CDD|99784 cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 34/138 (24%), Positives = 47/138 (34%), Gaps = 28/138 (20%)
Query: 463 QPRYYSISSSPRVAPSRI--HVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 520
R YS ++ P I HV V G S + + L K D
Sbjct: 40 TWRAYSPANPPN-EDGEIEFHVR-----------AVPGGRVSNALHDEL---KVGD---- 80
Query: 521 PIFVR--QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCR 578
+ + F L D P++ I GTGLAP R +++ G P LFFG R
Sbjct: 81 RVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVED---ALRRGEPR-PVHLFFGAR 136
Query: 579 NRKMDYIYEDELNNFVQS 596
+ D + L
Sbjct: 137 TER-DLYDLEGLLALAAR 153
|
Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. Length = 224 |
| >gnl|CDD|99781 cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)H binding domain of flavohemoglobin | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 46/198 (23%), Positives = 72/198 (36%), Gaps = 31/198 (15%)
Query: 463 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSND---CSW 519
Q R YS+S +P RI V K R GL S ++ +++ K D S
Sbjct: 56 QIRQYSLSDAPNGDYYRISV-------K----REPGGLVSNYLHDNV---KVGDVLEVS- 100
Query: 520 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRN 579
AP +F L + P+++I G G+ P L+ E P RN
Sbjct: 101 AP----AGDFVLDEASDRPLVLISAGVGITPMLSMLEA--LAAEGPGR--PVTFIHAARN 152
Query: 580 RKMDYIYEDELNNFVQSGALSQLIVAFSREGPT---KEYVQHKMMEKSSDIWNMLSEGAY 636
+ + DEL +L V +S ++Y ++ + +L A
Sbjct: 153 SA-VHAFRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHAGRIDLALLRELLLPADAD 211
Query: 637 LYVCGDAKSMARDVHRTL 654
Y+CG M + V L
Sbjct: 212 FYLCGPVPFM-QAVREGL 228
|
Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling. Length = 247 |
| >gnl|CDD|223949 COG1018, Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 39/196 (19%), Positives = 63/196 (32%), Gaps = 40/196 (20%)
Query: 465 RYYSISSSPRVAPS--RIHVTCALVYEKTPTGRVHKGLCSTWMKNSL--PMEKSNDCSWA 520
R YS+SS+P S RI V R G S W+ + L
Sbjct: 54 RAYSLSSAP-DEDSLYRISVK-----------REDGGGGSNWLHDHLKVGDT-------- 93
Query: 521 PIFVRQS--NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCR 578
+ V +F L + ++++ G G+ PF L+ A +L R
Sbjct: 94 -LEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRGPA-----DVVLVHAAR 147
Query: 579 NRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLY 638
D + DEL + L + R +++ + D G +Y
Sbjct: 148 TPA-DLAFRDELELAAELPNALLLGLYTERGKLQGRIDVSRLLSAAPDG------GREVY 200
Query: 639 VCGDAKSMARDVHRTL 654
+CG + V L
Sbjct: 201 LCGPGP-FMQAVRLAL 215
|
Length = 266 |
| >gnl|CDD|235854 PRK06703, PRK06703, flavodoxin; Provisional | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.004
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 16/135 (11%)
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIV 163
K+ I + + +G E A + A +D + + ++D A+E Y+ +
Sbjct: 2 AKILIAYASMSGNTEDIADLIKVSLDA-FDHEV-VLQEMDGMDAEELLAYD-------GI 52
Query: 164 FFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDE 223
T+GDG+ A F++ L K VFG G+ Y F + + +E
Sbjct: 53 ILGSYTWGDGDLPYEAEDFHEDLENID-----LSGKKVAVFGSGDTAYPLFCEAVTIFEE 107
Query: 224 ILANQGAKRLVPVGL 238
L +GA+ LV GL
Sbjct: 108 RLVERGAE-LVQEGL 121
|
Length = 151 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 687 | |||
| KOG1159 | 574 | consensus NADP-dependent flavoprotein reductase [E | 100.0 | |
| PRK10953 | 600 | cysJ sulfite reductase subunit alpha; Provisional | 100.0 | |
| KOG1158 | 645 | consensus NADP/FAD dependent oxidoreductase [Energ | 100.0 | |
| TIGR01931 | 597 | cysJ sulfite reductase [NADPH] flavoprotein, alpha | 100.0 | |
| COG0369 | 587 | CysJ Sulfite reductase, alpha subunit (flavoprotei | 100.0 | |
| cd06204 | 416 | CYPOR NADPH cytochrome p450 reductase (CYPOR) serv | 100.0 | |
| cd06202 | 406 | Nitric_oxide_synthase The ferredoxin-reductase (FN | 100.0 | |
| cd06207 | 382 | CyPoR_like NADPH cytochrome p450 reductase (CYPOR) | 100.0 | |
| cd06203 | 398 | methionine_synthase_red Human methionine synthase | 100.0 | |
| cd06206 | 384 | bifunctional_CYPOR These bifunctional proteins fus | 100.0 | |
| cd06199 | 360 | SiR Cytochrome p450- like alpha subunits of E. col | 100.0 | |
| PRK06214 | 530 | sulfite reductase; Provisional | 100.0 | |
| PLN03115 | 367 | ferredoxin--NADP(+) reductase; Provisional | 100.0 | |
| PF00667 | 219 | FAD_binding_1: FAD binding domain; InterPro: IPR00 | 100.0 | |
| cd06182 | 267 | CYPOR_like NADPH cytochrome p450 reductase (CYPOR) | 100.0 | |
| PLN03116 | 307 | ferredoxin--NADP+ reductase; Provisional | 100.0 | |
| cd06208 | 286 | CYPOR_like_FNR These ferredoxin reductases are rel | 100.0 | |
| TIGR03224 | 411 | benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p | 100.0 | |
| cd06201 | 289 | SiR_like2 Cytochrome p450- like alpha subunits of | 100.0 | |
| cd06200 | 245 | SiR_like1 Cytochrome p450- like alpha subunits of | 100.0 | |
| PRK09004 | 146 | FMN-binding protein MioC; Provisional | 100.0 | |
| PRK05723 | 151 | flavodoxin; Provisional | 100.0 | |
| PRK08105 | 149 | flavodoxin; Provisional | 100.0 | |
| PF00258 | 143 | Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This | 99.93 | |
| PRK07308 | 146 | flavodoxin; Validated | 99.91 | |
| cd00322 | 223 | FNR_like Ferredoxin reductase (FNR), an FAD and NA | 99.91 | |
| PRK10926 | 248 | ferredoxin-NADP reductase; Provisional | 99.9 | |
| cd06189 | 224 | flavin_oxioreductase NAD(P)H dependent flavin oxid | 99.9 | |
| cd06188 | 283 | NADH_quinone_reductase Na+-translocating NADH:quin | 99.9 | |
| PRK08051 | 232 | fre FMN reductase; Validated | 99.89 | |
| cd06211 | 238 | phenol_2-monooxygenase_like Phenol 2-monooxygenase | 99.89 | |
| PRK07609 | 339 | CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat | 99.89 | |
| cd06190 | 232 | T4MO_e_transfer_like Toluene-4-monoxygenase electr | 99.89 | |
| PRK05464 | 409 | Na(+)-translocating NADH-quinone reductase subunit | 99.89 | |
| PRK13289 | 399 | bifunctional nitric oxide dioxygenase/dihydropteri | 99.89 | |
| cd06209 | 228 | BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD | 99.89 | |
| PRK12359 | 172 | flavodoxin FldB; Provisional | 99.89 | |
| TIGR01941 | 405 | nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo | 99.89 | |
| PRK06703 | 151 | flavodoxin; Provisional | 99.88 | |
| cd06191 | 231 | FNR_iron_sulfur_binding Iron-sulfur binding Ferred | 99.88 | |
| cd06210 | 236 | MMO_FAD_NAD_binding Methane monooxygenase (MMO) re | 99.88 | |
| cd06195 | 241 | FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c | 99.88 | |
| PRK11872 | 340 | antC anthranilate dioxygenase reductase; Provision | 99.88 | |
| cd06187 | 224 | O2ase_reductase_like The oxygenase reductase FAD/N | 99.88 | |
| cd06212 | 232 | monooxygenase_like The oxygenase reductase FAD/NAD | 99.88 | |
| PRK10684 | 332 | HCP oxidoreductase, NADH-dependent; Provisional | 99.87 | |
| PRK08345 | 289 | cytochrome-c3 hydrogenase subunit gamma; Provision | 99.87 | |
| cd06194 | 222 | FNR_N-term_Iron_sulfur_binding Iron-sulfur binding | 99.87 | |
| cd06216 | 243 | FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr | 99.87 | |
| KOG1160 | 601 | consensus Fe-S oxidoreductase [Energy production a | 99.87 | |
| PRK05713 | 312 | hypothetical protein; Provisional | 99.87 | |
| cd06184 | 247 | flavohem_like_fad_nad_binding FAD_NAD(P)H binding | 99.86 | |
| cd06213 | 227 | oxygenase_e_transfer_subunit The oxygenase reducta | 99.86 | |
| cd06221 | 253 | sulfite_reductase_like Anaerobic sulfite reductase | 99.86 | |
| cd06215 | 231 | FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr | 99.86 | |
| cd06196 | 218 | FNR_like_1 Ferredoxin reductase-like proteins cata | 99.85 | |
| cd06214 | 241 | PA_degradation_oxidoreductase_like NAD(P) binding | 99.85 | |
| TIGR02160 | 352 | PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, | 99.84 | |
| cd06217 | 235 | FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr | 99.84 | |
| PRK09271 | 160 | flavodoxin; Provisional | 99.84 | |
| cd06218 | 246 | DHOD_e_trans FAD/NAD binding domain in the electro | 99.84 | |
| PRK08221 | 263 | anaerobic sulfite reductase subunit B; Provisional | 99.84 | |
| PTZ00274 | 325 | cytochrome b5 reductase; Provisional | 99.83 | |
| cd06198 | 216 | FNR_like_3 NAD(P) binding domain of ferredoxin red | 99.83 | |
| cd06183 | 234 | cyt_b5_reduct_like Cytochrome b5 reductase catalyz | 99.83 | |
| PRK06756 | 148 | flavodoxin; Provisional | 99.83 | |
| TIGR02911 | 261 | sulfite_red_B sulfite reductase, subunit B. Member | 99.82 | |
| COG1018 | 266 | Hmp Flavodoxin reductases (ferredoxin-NADPH reduct | 99.82 | |
| TIGR01754 | 140 | flav_RNR ribonucleotide reductase-associated flavo | 99.82 | |
| TIGR01752 | 167 | flav_long flavodoxin, long chain. Flavodoxins are | 99.82 | |
| cd06185 | 211 | PDR_like Phthalate dioxygenase reductase (PDR) is | 99.82 | |
| PTZ00319 | 300 | NADH-cytochrome B5 reductase; Provisional | 99.82 | |
| TIGR01753 | 140 | flav_short flavodoxin, short chain. Flavodoxins ar | 99.8 | |
| cd06197 | 220 | FNR_like_2 FAD/NAD(P) binding domain of ferredoxin | 99.8 | |
| COG2871 | 410 | NqrF Na+-transporting NADH:ubiquinone oxidoreducta | 99.8 | |
| PRK00054 | 250 | dihydroorotate dehydrogenase electron transfer sub | 99.8 | |
| COG0543 | 252 | UbiB 2-polyprenylphenol hydroxylase and related fl | 99.79 | |
| cd06220 | 233 | DHOD_e_trans_like2 FAD/NAD binding domain in the e | 99.79 | |
| cd06192 | 243 | DHOD_e_trans_like FAD/NAD binding domain (electron | 99.77 | |
| PRK06222 | 281 | ferredoxin-NADP(+) reductase subunit alpha; Review | 99.77 | |
| COG0716 | 151 | FldA Flavodoxins [Energy production and conversion | 99.77 | |
| cd06219 | 248 | DHOD_e_trans_like1 FAD/NAD binding domain in the e | 99.76 | |
| PRK09267 | 169 | flavodoxin FldA; Validated | 99.76 | |
| PRK05802 | 320 | hypothetical protein; Provisional | 99.75 | |
| PLN02252 | 888 | nitrate reductase [NADPH] | 99.75 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 99.72 | |
| PF00175 | 109 | NAD_binding_1: Oxidoreductase NAD-binding domain ; | 99.7 | |
| KOG0534 | 286 | consensus NADH-cytochrome b-5 reductase [Coenzyme | 99.69 | |
| COG4097 | 438 | Predicted ferric reductase [Inorganic ion transpor | 99.68 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 99.65 | |
| cd06186 | 210 | NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz | 99.62 | |
| TIGR00333 | 125 | nrdI ribonucleoside-diphosphate reductase 2, opero | 99.62 | |
| cd06193 | 235 | siderophore_interacting Siderophore interacting pr | 99.61 | |
| PRK02551 | 154 | flavoprotein NrdI; Provisional | 99.6 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 99.59 | |
| PRK11921 | 394 | metallo-beta-lactamase/flavodoxin domain-containin | 99.53 | |
| PRK03600 | 134 | nrdI ribonucleotide reductase stimulatory protein; | 99.51 | |
| PRK05452 | 479 | anaerobic nitric oxide reductase flavorubredoxin; | 99.5 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.5 | |
| PRK05569 | 141 | flavodoxin; Provisional | 99.48 | |
| PRK05568 | 142 | flavodoxin; Provisional | 99.48 | |
| PLN02292 | 702 | ferric-chelate reductase | 99.3 | |
| PRK06242 | 150 | flavodoxin; Provisional | 99.29 | |
| PLN02844 | 722 | oxidoreductase/ferric-chelate reductase | 99.28 | |
| PLN02631 | 699 | ferric-chelate reductase | 99.25 | |
| PRK11104 | 177 | hemG protoporphyrinogen oxidase; Provisional | 99.09 | |
| PRK07116 | 160 | flavodoxin; Provisional | 99.06 | |
| PRK03767 | 200 | NAD(P)H:quinone oxidoreductase; Provisional | 99.04 | |
| TIGR01755 | 197 | flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. | 99.03 | |
| PF07972 | 122 | Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: | 99.03 | |
| COG1780 | 141 | NrdI Protein involved in ribonucleotide reduction | 98.87 | |
| PF12724 | 143 | Flavodoxin_5: Flavodoxin domain | 98.85 | |
| COG0426 | 388 | FpaA Uncharacterized flavoproteins [Energy product | 98.8 | |
| KOG3378 | 385 | consensus Globins and related hemoproteins [Energy | 98.8 | |
| PF12641 | 160 | Flavodoxin_3: Flavodoxin domain | 98.58 | |
| PF03358 | 152 | FMN_red: NADPH-dependent FMN reductase; InterPro: | 98.56 | |
| PF08030 | 156 | NAD_binding_6: Ferric reductase NAD binding domain | 98.55 | |
| COG4635 | 175 | HemG Flavodoxin [Energy production and conversion | 98.48 | |
| PF12682 | 156 | Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A. | 98.38 | |
| PRK06934 | 221 | flavodoxin; Provisional | 98.14 | |
| PRK10569 | 191 | NAD(P)H-dependent FMN reductase; Provisional | 98.06 | |
| PRK00170 | 201 | azoreductase; Reviewed | 97.92 | |
| PRK01355 | 199 | azoreductase; Reviewed | 97.82 | |
| TIGR03567 | 171 | FMN_reduc_SsuE FMN reductase, SsuE family. Members | 97.8 | |
| KOG0039 | 646 | consensus Ferric reductase, NADH/NADPH oxidase and | 97.73 | |
| PRK09739 | 199 | hypothetical protein; Provisional | 97.72 | |
| TIGR03566 | 174 | FMN_reduc_MsuE FMN reductase, MsuE subfamily. Memb | 97.68 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 97.6 | |
| PF02525 | 199 | Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR0 | 97.57 | |
| PRK13556 | 208 | azoreductase; Provisional | 97.56 | |
| COG0655 | 207 | WrbA Multimeric flavodoxin WrbA [General function | 97.08 | |
| PF00970 | 99 | FAD_binding_6: Oxidoreductase FAD-binding domain; | 96.87 | |
| TIGR02690 | 219 | resist_ArsH arsenical resistance protein ArsH. Mem | 96.69 | |
| PRK04930 | 184 | glutathione-regulated potassium-efflux system anci | 96.42 | |
| PRK13555 | 208 | azoreductase; Provisional | 96.26 | |
| COG0431 | 184 | Predicted flavoprotein [General function predictio | 94.06 | |
| PRK00871 | 176 | glutathione-regulated potassium-efflux system anci | 93.46 | |
| COG2375 | 265 | ViuB Siderophore-interacting protein [Inorganic io | 91.85 | |
| KOG3135 | 203 | consensus 1,4-benzoquinone reductase-like; Trp rep | 91.58 | |
| COG2249 | 189 | MdaB Putative NADPH-quinone reductase (modulator o | 88.25 | |
| KOG0560 | 638 | consensus Sulfite reductase (ferredoxin) [Inorgani | 86.75 | |
| KOG1160 | 601 | consensus Fe-S oxidoreductase [Energy production a | 86.3 | |
| PRK02261 | 137 | methylaspartate mutase subunit S; Provisional | 81.07 |
| >KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-107 Score=854.81 Aligned_cols=540 Identities=34% Similarity=0.608 Sum_probs=466.7
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
++|+|+||||||||+.+|+.|.+++.+++. .+.|+.+|+|++ ++|.+..++||+|||+|+|++|+||+.||+
T Consensus 1 ~~i~ILYGSqTGtA~dvAe~l~Re~~r~~~--~~~V~s~Deyd~------~~ll~~~~vvFVcSTTGqGe~P~Nmk~~Wr 72 (574)
T KOG1159|consen 1 MKILILYGSQTGTAQDVAESLGREAHRRGL--QCLVMSMDEYDV------EKLLDERLVVFVCSTTGQGEEPDNMKKFWR 72 (574)
T ss_pred CceEEEeecCcccHHHHHHHHHHHHHhccC--CceEeeccccCH------hHhccCceEEEEEecCCCCCCCccHHHHHH
Confidence 579999999999999999999999998874 467899999996 578899999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCC--CcHHhHHHHHHHHHHHHHh
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDN 262 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~ 262 (687)
+|...+.+...|++++|||||||||+|+.||.++|+++++|.+|||+.++++|+|||+. +++..|..|...||..|..
T Consensus 73 fL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~lw~~L~~ 152 (574)
T KOG1159|consen 73 FLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKELWSYLKG 152 (574)
T ss_pred HHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccccccccccccccccchhhhHHHHHHHHHHHHh
Confidence 99988888889999999999999999999999999999999999999999999999954 7999999999999999998
Q ss_pred hhCCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCccc--cCCCCeeEEEeeeecccCCCCCCceEEEEE
Q 005624 263 LLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVY--DAQHPCRSNVAVRKELHTPSSDRSCTHLEF 340 (687)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~a~v~~~~~L~~~~~~r~~~hle~ 340 (687)
+.....+......+ ....+.|++-...... . + ..+..+. ..+-| ++++.|+++|+.++.+.++|++|
T Consensus 153 i~~p~~~~t~l~~~-~~~~~k~~~l~~~~~~-~-----~--~d~~~v~~~~~~~~--~k~~~N~rlT~~~HfQDVR~~~F 221 (574)
T KOG1159|consen 153 IYPPYRPETDLIPT-VQITTKYSLLELGKAS-D-----F--SDSDIVLEPQGQIP--AKLVENRRLTSADHFQDVRLFEF 221 (574)
T ss_pred hcCCCCCcccCCCc-ccccchhhhhhccccc-c-----C--Ccchhhhccccccc--cchhcceeecCcchhheeeEEEE
Confidence 77511110000011 1122334433222210 0 0 0011111 11222 78999999999999999999999
Q ss_pred eecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCCCCCCC-cCcHHHHHHHhhhhcC
Q 005624 341 DIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLS 419 (687)
Q Consensus 341 di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~~~~~p-p~tl~~~l~~y~Dl~~ 419 (687)
+|.++.+.|+|||++.|+|.|+.+.|+++++.+||++++...+.....+. .+..+-+| |+|+++++++|+|+++
T Consensus 222 ~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~-----~~~~~~~~~p~sl~~~lk~~~D~~S 296 (574)
T KOG1159|consen 222 DIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDR-----SSPLPLLPNPLSLLNLLKYVLDFNS 296 (574)
T ss_pred ecCCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCcc-----cccccccCCchhHHHHHHHhccccc
Confidence 99999999999999999999999999999999999998877665433221 11122577 9999999999999999
Q ss_pred CCCh----------------------------hHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccccCC
Q 005624 420 SPKK----------------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISS 471 (687)
Q Consensus 420 ~p~k----------------------------~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsS 471 (687)
.|++ |+|.+|+.+++||++|+|++|+|.+.|++++++. +|.++||+|||||
T Consensus 297 vPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp~~yl~d~-~P~IrPR~fSIas 375 (574)
T KOG1159|consen 297 VPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLPIDYLLDL-LPVIRPRAFSIAS 375 (574)
T ss_pred CcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCCHHHHHHh-ccccccceeeecc
Confidence 9997 7899999999999999999999999999999985 5999999999999
Q ss_pred CCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEEEecCCcchhH
Q 005624 472 SPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPF 551 (687)
Q Consensus 472 sp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiImIa~GTGIAPf 551 (687)
+|..+ .++++|++|.++|.....+.|+||+||+++.+++ .+++.+++|++.+|.+.+.|+||||||||||||
T Consensus 376 ~~~~~--~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~------~i~~~v~~g~l~~p~~~~~PlImVGPGTGvAPf 447 (574)
T KOG1159|consen 376 SPGAH--HLELLVAIVEYKTILKEPRRGLCSNWLASLKPGD------EIPIKVRPGTLYFPSDLNKPLIMVGPGTGVAPF 447 (574)
T ss_pred CCCCC--ceeEEEEEEEEeeeccccccchhHHHHhhcCCCC------eEEEEEecCccccCCCCCCCeEEEcCCCCcccH
Confidence 99754 3999999999999999999999999999999977 479999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhcchHHHHhcc
Q 005624 552 RGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNML 631 (687)
Q Consensus 552 rsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~e~~~~v~~~i 631 (687)
||++++|..++. .+..||||||++++||+|++||....+.+. +.|||||++.|+||||+|++.++.||+++
T Consensus 448 Ra~i~er~~q~~-----~~~~lFfGCR~K~~Df~y~~eW~~~~~~~~----~~AFSRDqe~kvYVQh~i~e~g~~v~~Ll 518 (574)
T KOG1159|consen 448 RALIQERIYQGD-----KENVLFFGCRNKDKDFLYEDEWTELNKRAF----HTAFSRDQEQKVYVQHKIRENGEEVWDLL 518 (574)
T ss_pred HHHHHHHHhhcc-----CCceEEEecccCCccccccchhhhhhcchh----hhhcccccccceeHHHHHHHhhHHHHHHH
Confidence 999999987542 456999999999999999999999887653 44999999999999999999999999998
Q ss_pred -cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 632 -SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 632 -~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
+.||+|||||++..|..+|..+|.+|+.+.++.+.+.|. |++.|++++||+.|+|
T Consensus 519 ~~~gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 519 DNLGAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred hccCCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhccccccCC
Confidence 599999999999999999999999999999999776666 9999999999999999
|
|
| >PRK10953 cysJ sulfite reductase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-105 Score=909.20 Aligned_cols=519 Identities=29% Similarity=0.517 Sum_probs=451.5
Q ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHH
Q 005624 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (687)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~ 181 (687)
..+++|+|+|||||||||.+|++|++.+.+.+ ..++++++++|++ .+|.+++.+||++||||+|+|||||..
T Consensus 59 ~~~~~v~IlygSqTGnae~lA~~la~~l~~~g--~~~~v~~~~d~~~------~~L~~~~~vl~v~ST~G~Ge~Pdna~~ 130 (600)
T PRK10953 59 AEMPGITLISASQTGNARRVAEQLRDDLLAAK--LNVNLVNAGDYKF------KQIAQEKLLIVVTSTQGEGEPPEEAVA 130 (600)
T ss_pred CCCCeEEEEEEcCchHHHHHHHHHHHHHHhCC--CCcEEechHhCCH------hHhccCCeEEEEECCCCCCCCChhHHH
Confidence 34788999999999999999999999998876 4468899999985 458889999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHH
Q 005624 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 261 (687)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 261 (687)
||+||.... ...|.+++||||||||++|++||.++|.+|++|+++||+|+++++.+|. +.+++|+.|.+++|++|.
T Consensus 131 F~~~L~~~~--~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~~d~D~--~~e~~~~~W~~~~~~~l~ 206 (600)
T PRK10953 131 LHKFLFSKK--APKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVDADV--EYQAAASEWRARVVDALK 206 (600)
T ss_pred HHHHHhhCc--CcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeeccccccc--ccHHHHHHHHHHHHHHHH
Confidence 999997543 3469999999999999999999999999999999999999999987654 479999999999999998
Q ss_pred hhhCCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCccccCCCCeeEEEeeeecccCCCCCCceEEEEEe
Q 005624 262 NLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 341 (687)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~d 341 (687)
+...... ...... . . .... ......|+..+|+.|+|+.|++|+.++++|+|+|||||
T Consensus 207 ~~~~~~~----~~~~~~---~--~----~~~~----------~~~~~~~~~~~p~~a~v~~n~~Lt~~~~~k~~rhie~d 263 (600)
T PRK10953 207 SRAPAVA----APSQSV---A--T----GAVN----------EIHTSPYSKEAPLTASLSVNQKITGRNSEKDVRHIEID 263 (600)
T ss_pred hhcCCcc----cccccc---c--c----cccc----------ccccCCCCCCCCeEEEEEEEeecCCCCCCceEEEEEEe
Confidence 7653110 000000 0 0 0000 00112466789999999999999999999999999999
Q ss_pred ecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCC
Q 005624 342 IAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSP 421 (687)
Q Consensus 342 i~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p 421 (687)
|++++++|+|||||+|||+|+++.|+++|++||+++++.+.+.. .++|++++|++|+||+.++
T Consensus 264 l~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~~-----------------~~~tl~~~l~~~~dl~~~~ 326 (600)
T PRK10953 264 LGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDG-----------------KTLPLAEALQWHFELTVNT 326 (600)
T ss_pred cCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeCC-----------------CCCCHHHHHHHhcccCCCc
Confidence 99999999999999999999999999999999999998876631 1468999999999999875
Q ss_pred Ch---------------------hHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeE
Q 005624 422 KK---------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRI 480 (687)
Q Consensus 422 ~k---------------------~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i 480 (687)
+. +.+.+|+ ..++++|||++|| .++++++|++. +|+++||+|||||+|...++++
T Consensus 327 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~--~~~~~~dvL~~f~-~~~~~~q~l~l-l~~l~pR~YSIaSsp~~~~~~v 402 (600)
T PRK10953 327 ANIVENYATLTRSETLLPLVGDKAALQHYA--ATTPIVDMVRFAP-AQLDAEQLIGL-LRPLTPRLYSIASSQAEVENEV 402 (600)
T ss_pred HHHHHHHHHhCCCHHHHHHhcCHHHHHHHh--cCCCHHHHHHhCC-CCCCHHHHHHh-CCCCCCeeeecccCCCCCCCeE
Confidence 43 3344454 4699999999998 68999999975 5899999999999998778999
Q ss_pred EEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEee-CCcccCCCCCCCeEEEecCCcchhHHHHHHHH
Q 005624 481 HVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQER 558 (687)
Q Consensus 481 ~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~-~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r 558 (687)
||+|+++.+.. .|+.+.|+||+||.+ +.+|+ .++|+++. +.|++|.++.+|+||||+||||||||||+|+|
T Consensus 403 ~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~Gd------~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r 475 (600)
T PRK10953 403 HITVGVVRYDI-EGRARAGGASSFLADRLEEEG------EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQR 475 (600)
T ss_pred EEEEEEEEeec-CCCCcCceEhhhhhhcCCCCC------EEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHH
Confidence 99999887763 688899999999986 55544 57888875 58999988899999999999999999999999
Q ss_pred HHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhcchHHHHhcccCCcEEE
Q 005624 559 FALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLY 638 (687)
Q Consensus 559 ~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iY 638 (687)
...+. .+++|||||||++..||+|++||++|.++|.++++++||||++.+|+||||+|.++++++|+++.+|++||
T Consensus 476 ~~~~~----~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSRd~~~k~YVQ~~l~e~~~~l~~~l~~ga~~Y 551 (600)
T PRK10953 476 AADGA----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIY 551 (600)
T ss_pred HHcCC----CCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHCCcEEE
Confidence 76542 37899999999977799999999999999999999999999988899999999999999999999999999
Q ss_pred EECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 639 VCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 639 vCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
||||++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 552 VCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 552 VCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred EECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 9999878999999999999999999999999999999999999999999
|
|
| >KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-106 Score=901.95 Aligned_cols=568 Identities=47% Similarity=0.809 Sum_probs=484.0
Q ss_pred ccccCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCch
Q 005624 99 EVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDN 178 (687)
Q Consensus 99 ~~~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdn 178 (687)
.....+.+++|+|+|||||||.+|+.+++.+ +++....+.+.|.+.++.+ ....+++|+.+|||+|+||||
T Consensus 41 ~~~~~~~~~~v~~~s~tgtae~~a~~l~~~~-~~~~~~~~~~~d~~~~~l~--------~~~~l~~~~~at~g~gd~~dn 111 (645)
T KOG1158|consen 41 KVKAKRVKATVLYGSQTGTAEDFAKRLSEIF-ARFELKVLKVADYDLYALE--------DHEKLLVVVLATYGEGDPPDN 111 (645)
T ss_pred HhhccceeEEEEeccCCCCHHHHHHHHHHHh-hhccccceeecchhhcccc--------cccceeeeeeehhcCCCCCcc
Confidence 4456788999999999999999999999999 7775444455555555531 456899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHH
Q 005624 179 AARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 258 (687)
Q Consensus 179 a~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~ 258 (687)
++.|..||.+.... ....++|+|||+||++|+|||++|+.+|++|+++||+|++.+|+||++.+.|++|..|++.+|+
T Consensus 112 ~~~f~~~l~~~~~~--~~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl~~~glgdd~~~~e~~f~~w~~~~~~ 189 (645)
T KOG1158|consen 112 AEAFYQSLTELKVL--PSSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRLFQLGLGDDDAGLEEDFRTWKKPLLP 189 (645)
T ss_pred HHHHHHHHhhccCc--hhhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhhhccccccccccchhHHHHHHHHHhH
Confidence 99999999986433 3445899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCCCCCCCCccccccceEEEEecC-CCcccC-ccccCCCCCCccccCCCCeeEEEeeeecccCCCCCCceE
Q 005624 259 ELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDN-ADASVG-EKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCT 336 (687)
Q Consensus 259 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~ 336 (687)
++++.+..+... .++.....+.++...... ...... .......+...+++..+|+.+.++.+++|+++.++|+|+
T Consensus 190 ~~~~~f~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~ 266 (645)
T KOG1158|consen 190 ELCETFSLEEDE---ATKEDETIRQYRTWTPNDPPFVPQAFPPELLNLLSSTPFDKVFPFPALVVVNLALSTPSSDRSCI 266 (645)
T ss_pred hhhheeeecccc---ccCCcccccccccCcCccccccccccCccccccccCCcchhcccchhhhhHHhhccCCCCceEEE
Confidence 999887644221 111111111122111100 000000 000011222356788999999999999999888999999
Q ss_pred EEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCC-cCCCCCCCCCCC-cCcHHHHHHHh
Q 005624 337 HLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGT-PLGKSTLPPTFP-PCSLRTALTKY 414 (687)
Q Consensus 337 hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~-~l~~~~~~~~~p-p~tl~~~l~~y 414 (687)
|+++++.+.+++|+||||++|+|.|..+.|++++++|+++++..+.++....+++ +. ....++|+| |||+|++|++|
T Consensus 267 ~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~t~~~~l~~~ 345 (645)
T KOG1158|consen 267 HLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPT-PAKKPHPFPLPTTLRTALTHY 345 (645)
T ss_pred EEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCC-ccccCCCCCCCCcHHHHHHHh
Confidence 9999999999999999999999999999999999999999988877776544322 22 235678998 99999999999
Q ss_pred hhhcCCCCh----------------------------hHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccc
Q 005624 415 ADLLSSPKK----------------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRY 466 (687)
Q Consensus 415 ~Dl~~~p~k----------------------------~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~ 466 (687)
+||+++|+| .+|..|+....+|++|||.+||+++||+.++++. +|+++||+
T Consensus 346 ldi~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~kpP~~~ll~~-lp~L~pR~ 424 (645)
T KOG1158|consen 346 LDITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCKPPLPHLLEL-LPRLQPRY 424 (645)
T ss_pred ccccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCCCCCCHHHHHHh-Cccccccc
Confidence 999999998 6789999999999999999999999999888874 69999999
Q ss_pred cccCCCCCCCCCeEEEEEEEEEeeCCCC-ccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEEEecC
Q 005624 467 YSISSSPRVAPSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPG 545 (687)
Q Consensus 467 YSIsSsp~~~~~~i~itv~~v~~~~~~g-~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiImIa~G 545 (687)
|||||||..+++++|+++.++.+.++.| +.++|+||+||+++.+++... .++.++.+.|+||.|+.+||||||+|
T Consensus 425 YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~----~~~~~~~s~frlp~dp~~PiIMIGpG 500 (645)
T KOG1158|consen 425 YSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVP----NPVPVGKSMFRLPSDPSTPIIMIGPG 500 (645)
T ss_pred cccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccC----cceeecccceecCCCCCCcEEEEcCC
Confidence 9999999999999999999999888876 778899999999999987632 14777889999999999999999999
Q ss_pred CcchhHHHHHHHHHHhhhcCC--CCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCC-CCccccchhhhc
Q 005624 546 TGLAPFRGFLQERFALQEAGA--ELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG-PTKEYVQHKMME 622 (687)
Q Consensus 546 TGIAPfrsflq~r~~~~~~~~--~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~-~~k~yVq~~l~e 622 (687)
|||||||||+|+|..+++.+. ..+ +|||||||+++.||||++||+++.+.+.++++.+||||++ +.|.||||+|++
T Consensus 501 TGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SReq~~~k~YVQd~l~e 579 (645)
T KOG1158|consen 501 TGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSREQTPKKIYVQDRLRE 579 (645)
T ss_pred CcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeeeccCCCCceehhhHHHH
Confidence 999999999999999876542 234 8999999999999999999999999999999999999998 789999999999
Q ss_pred chHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 623 KSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 623 ~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
++++||++| +++|+||||||+++|+++|.++|.+|+++.++++.++|++++++|++++||++|||
T Consensus 580 ~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~~Ry~~DVw 645 (645)
T KOG1158|consen 580 YADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKKSKRYIEDVW 645 (645)
T ss_pred HHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhhccccccccC
Confidence 999999999 56999999999888999999999999999999999999999999999999999999
|
|
| >TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-101 Score=883.97 Aligned_cols=518 Identities=35% Similarity=0.629 Sum_probs=451.1
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHH
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F 182 (687)
.+++|+|+|||||||||.+|+.|++++.+.+ ..+++.++++|+. +++.+++.+||++||||+|+||+||..|
T Consensus 57 ~~~~i~IlygSqTGnae~~A~~l~~~l~~~g--~~~~v~~~~d~~~------~~l~~~~~li~v~ST~GeGe~Pdna~~F 128 (597)
T TIGR01931 57 QEKRVTILYGSQTGNARRLAKRLAEKLEAAG--FSVRLSSADDYKF------KQLKKERLLLLVISTQGEGEPPEEAISF 128 (597)
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHHHhCC--CccEEechHHCCH------hhcccCceEEEEeCCCCCCcCCHHHHHH
Confidence 3678999999999999999999999998876 4568999999985 4588899999999999999999999999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHh
Q 005624 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (687)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (687)
++||...+ .+.|++++||||||||++|++||.++|.+|++|+++||+|++|++.+|. +.+++|+.|.+++|+.|.+
T Consensus 129 ~~~L~~~~--~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~~~~~D~--~~e~~~~~W~~~~~~~l~~ 204 (597)
T TIGR01931 129 HKFLHSKK--APKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPRVDADL--DYDANAAEWRAGVLTALNE 204 (597)
T ss_pred HHHHHhCC--CcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeeccccCcc--ChHHHHHHHHHHHHHHHHh
Confidence 99998643 3469999999999999999999999999999999999999999998775 4789999999999999986
Q ss_pred hhCCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCccccCCCCeeEEEeeeecccCCCCCCceEEEEEee
Q 005624 263 LLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDI 342 (687)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di 342 (687)
.+... ... +.+.+. ... .......|+..+|+.|+|+.|++|+..+++++|+||||||
T Consensus 205 ~~~~~-----~~~------~~~~~~--~~~----------~~~~~~~~~~~~p~~a~v~~n~~lt~~~~~k~~~hiel~l 261 (597)
T TIGR01931 205 QAKGS-----AST------PSLSET--PAR----------SQTATSVYSKQNPFRAEVLENQKITGRNSKKDVRHIEIDL 261 (597)
T ss_pred hccCc-----cCC------Ccceec--ccc----------cccccCCccCCCCeEEEEEeeEecCCCCCCceEEEEEEec
Confidence 54211 001 111110 000 0011234667899999999999999999999999999999
Q ss_pred cCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCC
Q 005624 343 AGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPK 422 (687)
Q Consensus 343 ~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~ 422 (687)
++++++|+|||||+|||+|+++.|+++|++||+++++.+++. + +++|++++|++|+||+.+++
T Consensus 262 ~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~-----~------------~~~tl~~~l~~~~dl~~~~~ 324 (597)
T TIGR01931 262 EGSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIG-----G------------KTIPLFEALITHFELTQNTK 324 (597)
T ss_pred CCCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeC-----C------------CCcCHHHHHHhceeCCCCCH
Confidence 999999999999999999999999999999999999887653 1 15799999999999998653
Q ss_pred h---------------------hHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEE
Q 005624 423 K---------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIH 481 (687)
Q Consensus 423 k---------------------~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~ 481 (687)
. +.|.+|+. +++++|||.+|| +++++|||+++ +|+++||+|||||+|...+++++
T Consensus 325 ~~l~~la~~~~~~~l~~~~~~~~~~~~y~~--~~~~~dvl~~fp-~~~~~gq~v~l-l~~~~~R~YSIaSsp~~~~~~l~ 400 (597)
T TIGR01931 325 PLLKAYAELTGNKELKALIADNEKLKAYIQ--NTPLIDLIRDYP-ADLDAEQLISL-LRPLTPRLYSISSSQSEVGDEVH 400 (597)
T ss_pred HHHHHHHHhcCCHHHHHHhcCHHHHHHHHc--CCCHHHHHHHCC-CCCCHHHHHHh-CcccCCceeeeccCcccCCCEEE
Confidence 2 34566663 789999999999 89999999975 58899999999999987788999
Q ss_pred EEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEee-CCcccCCCCCCCeEEEecCCcchhHHHHHHHHH
Q 005624 482 VTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERF 559 (687)
Q Consensus 482 itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~-~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~ 559 (687)
|+|++|.+. ..|+.+.|+||+||.+ +.+|+ .++|+++. +.|++|.++.+|+||||+||||||||||+|+|.
T Consensus 401 ltV~~v~~~-~~~~~~~G~~S~~L~~~l~~Gd------~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~ 473 (597)
T TIGR01931 401 LTVGVVRYQ-AHGRARLGGASGFLAERLKEGD------TVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERA 473 (597)
T ss_pred EEEEEEEec-CCCCccccchhHHHHhhCCCCC------EEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHH
Confidence 999988765 4678899999999998 66654 57888865 579999888899999999999999999999997
Q ss_pred HhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhcchHHHHhcccCCcEEEE
Q 005624 560 ALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYV 639 (687)
Q Consensus 560 ~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYv 639 (687)
..+. .++++||||||++..|++|++||+++.+++.++++++||||++..|+||||+|.++.+++|+++.++++|||
T Consensus 474 ~~~~----~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSRd~~~k~yVqd~l~e~~~~~~~~l~~~a~vYv 549 (597)
T TIGR01931 474 EDGA----KGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSRDQAEKIYVQHRIREQGAELWQWLQEGAHIYV 549 (597)
T ss_pred HccC----CCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEE
Confidence 6542 378999999999656999999999999999998999999998778999999999999999998888999999
Q ss_pred ECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 640 CGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 640 CG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
|||++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 550 CG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 550 CGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred ECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 996689999999999999999999999999999999999999999999
|
This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase. |
| >COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-99 Score=845.59 Aligned_cols=520 Identities=38% Similarity=0.677 Sum_probs=457.6
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHH
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F 182 (687)
.+..++|+||||||||+.+|+.+++++...+ ..+.+.++++|++. ++.....++|++||+|+|+||+||..|
T Consensus 46 ~~~~~~il~~sqtG~a~~~A~~~a~~~~~~g--~~~~~~~~~~~~~~------~~~~~~~~~~i~st~geGe~p~na~~f 117 (587)
T COG0369 46 NNKPITVLYGSQTGNAEGLAEELAKELEAAG--LQVLVASLDDYKPK------DIAEERLLLFVVSTQGEGEPPDNAVAF 117 (587)
T ss_pred CCCceEEEEccCCccHHHHHHHHHHHHHhcC--CceeecchhhcChh------hHHhhhceEEEEccccCCCCCCchHHH
Confidence 6788999999999999999999999999887 45788999999963 344446899999999999999999999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHh
Q 005624 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (687)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (687)
+++|... +...|.+++|+||||||++|++||.++|.++++|.++||+++.+++.+|+. +++++...|...+++.+..
T Consensus 118 ~~~l~~~--~a~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~~-~~e~~~~~w~~~~~~~l~~ 194 (587)
T COG0369 118 HEFLKGK--KAPKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLFPRVEADVQ-DFEAAAAPWRDDVLELLKS 194 (587)
T ss_pred HHHhccc--ccccccccchhhhcCCccchhhhhccchhhHHHHHhcCcccccCccccccc-ccchhhhHHHHHHHHHHHh
Confidence 9999864 355799999999999999999999999999999999999999999999875 7789999999999998887
Q ss_pred hhCCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCccccCCCCeeEEEeeeecccCCCCCCceEEEEEee
Q 005624 263 LLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDI 342 (687)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di 342 (687)
........ ...++. .+. . ...+....|+.+.+..|++|+..+++|+|+|++||+
T Consensus 195 ~~~~~~~~--~~~~~~--~~~---------------------~-~~~~~~~~~~~a~~~~n~~l~~~~~~k~~rhie~~l 248 (587)
T COG0369 195 KFPGQEAA--PAQVAT--SPQ---------------------S-ESPYSKPAPSVAILLENRKLTGRDSDKDVRHIELDL 248 (587)
T ss_pred hccccccc--cccccc--hhc---------------------c-cccccccCcceeEeeccccCCccccCceeEEEEeec
Confidence 65322110 000000 000 0 122334567789999999999999999999999999
Q ss_pred cCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCC
Q 005624 343 AGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPK 422 (687)
Q Consensus 343 ~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~ 422 (687)
++++++|+|||+|+|||+|+++.|++++..||+++++.++++ -.+.++.++|.+|+|+++.|+
T Consensus 249 ~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~-----------------~~~~~~~~~l~~~~e~~~~~~ 311 (587)
T COG0369 249 PDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD-----------------GETLPLVEALKSHFEFTSAPK 311 (587)
T ss_pred ccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC-----------------CCcchHHHHHHHheecccchH
Confidence 999999999999999999999999999999999998666331 116789999999999999993
Q ss_pred h-----------hHHHHHHH----------hcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEE
Q 005624 423 K-----------DEYAQWIV----------ASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIH 481 (687)
Q Consensus 423 k-----------~~y~~~i~----------~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~ 481 (687)
. +++.+++. ..+++++|+|.+||++++|+++|++. +|+++||+|||||+|..+++++|
T Consensus 312 ~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~d~L~~f~~~~l~~~~li~~-l~~lkPR~YSIsSs~~~~~~~vh 390 (587)
T COG0369 312 SLLENLAHFAGQEELRRLLEQLDIADLQDYAKRRTLIDVLRDFPPAKLPAEELIDL-LPPLKPRLYSIASSPGVSPDEVH 390 (587)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhhhHHHHhhhccccHHHHHhhccccCCCHHHHHHh-CccCCCeeeEeccCCCCCCCeEE
Confidence 2 22222222 34799999999999999999999975 59999999999999999999999
Q ss_pred EEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeC-CcccCCCCCCCeEEEecCCcchhHHHHHHHHHH
Q 005624 482 VTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFA 560 (687)
Q Consensus 482 itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~-~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~ 560 (687)
+||.+|.+... ++.+.|+||+||+++...++ .++|+++.+ +|++|.++.+||||||+||||||||||+|+|..
T Consensus 391 ltV~vV~y~~~-~~~r~GvcS~~L~~~~~~g~-----~i~v~v~~n~nf~lp~~~~~PiIMIG~GTGIAPFRafvq~r~~ 464 (587)
T COG0369 391 LTVGVVRYQAE-GRERYGVCSGYLADLLEEGD-----TIPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFRAFVQERAA 464 (587)
T ss_pred EEEEEEEeccC-CCcccccchHHHHhhhcCCC-----eEEEEeccCCccccCCCCCCceEEEcCCCCchhHHHHHHHHHh
Confidence 99999988877 55899999999999988443 589999866 899999999999999999999999999999998
Q ss_pred hhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhcchHHHHhcccCCcEEEEE
Q 005624 561 LQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVC 640 (687)
Q Consensus 561 ~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvC 640 (687)
.+.. |++|||||||+.+.||||++||++|.+.|.++++.+||||++.+|.||||+|++++++||+++++||+||||
T Consensus 465 ~~~~----gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~~KiYVQd~lre~~del~~~l~~ga~~YVC 540 (587)
T COG0369 465 NGAE----GKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQEEKIYVQDRLREQADELWEWLEEGAHIYVC 540 (587)
T ss_pred cccc----CceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCCCCccHHHHHHHhHHHHHHHHHCCCEEEEe
Confidence 7644 589999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 641 GDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 641 G~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
||++.|+++|+++|.+|+++.++++.++|++++++|++++||++|||
T Consensus 541 Gd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 541 GDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred CCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence 98899999999999999999999999999999999999999999999
|
|
| >cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-72 Score=620.67 Aligned_cols=368 Identities=52% Similarity=0.950 Sum_probs=327.7
Q ss_pred CCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCC-CCceEEEeeCCCCC
Q 005624 312 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS-PDTYFSLHTDKEDG 390 (687)
Q Consensus 312 ~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~-~d~~~~i~~~~~~~ 390 (687)
..+|+.|+|+.+++|+++ ++|+++||+||+++++++|+|||||+|+|+|+++.|+++|++||++ +++.+.+.....
T Consensus 2 ~~~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~-- 78 (416)
T cd06204 2 AKNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDE-- 78 (416)
T ss_pred CCCCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCc--
Confidence 357899999999999988 8999999999998889999999999999999999999999999999 899888864332
Q ss_pred CcCCCCCCCCCCC-cCcHHHHHHHhhhhcCCCCh---------------------------hHHHHHHHhcCCCHHHHHH
Q 005624 391 TPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKK---------------------------DEYAQWIVASQRSLLEVMS 442 (687)
Q Consensus 391 ~~l~~~~~~~~~p-p~tl~~~l~~y~Dl~~~p~k---------------------------~~y~~~i~~~~~~l~dvl~ 442 (687)
....+.|+| |+|++++|++|+||+++|++ ++|.+|+...++|++|+|.
T Consensus 79 ----~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~dvL~ 154 (416)
T cd06204 79 ----PASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLASEGKDEYAKWIVEPHRNLLEVLQ 154 (416)
T ss_pred ----ccccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHhcCHHHHHHHHhhcCCCHHHHHH
Confidence 123356788 99999999999999999987 3477888889999999999
Q ss_pred hCCCCC---CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCC------
Q 005624 443 EFPSAK---PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEK------ 513 (687)
Q Consensus 443 ~fps~~---~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~------ 513 (687)
+||+++ +|++.|++. +|+++||+|||||+|..++++++|||+++.+.++.++.+.|+||+||+++.++..
T Consensus 155 ~f~s~~~~~~pl~~ll~~-lp~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~ 233 (416)
T cd06204 155 DFPSAKPTPPPFDFLIEL-LPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPT 233 (416)
T ss_pred hCcccCCCCCCHHHHHHh-CccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhccccccc
Confidence 999999 999999975 5999999999999998888999999999999888889999999999999874110
Q ss_pred ---------CCCCceeeEEEeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCccc
Q 005624 514 ---------SNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDY 584 (687)
Q Consensus 514 ---------~~~~~~~~v~v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ 584 (687)
...++.++++++.|.|.+|.++.+|+||||+||||||||||++++......+...++++||||||+++.|+
T Consensus 234 ~~~~~~~~~~~~g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ 313 (416)
T cd06204 234 PYYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDF 313 (416)
T ss_pred ccccccccccCCCCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCccc
Confidence 00123688999999999998888999999999999999999999876543333357999999999985599
Q ss_pred ccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCC
Q 005624 585 IYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSL 664 (687)
Q Consensus 585 ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~ 664 (687)
+|++||++|.+.+.+++++++|||++..++|||++|.++.+.+++++.++++||||||+..|+++|.++|.+|+++++++
T Consensus 314 ly~~el~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~ 393 (416)
T cd06204 314 IYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAEQGGM 393 (416)
T ss_pred chHHHHHHHHHcCCceEEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHHHHHHhCCC
Confidence 99999999999888889999999988789999999999888999888778999999994449999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCeEEeeC
Q 005624 665 DSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 665 ~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
+.++|++|+++|+++|||++|||
T Consensus 394 ~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 394 TETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred CHHHHHHHHHHHHHcCCeeEecC
Confidence 99999999999999999999999
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo |
| >cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-71 Score=609.68 Aligned_cols=360 Identities=42% Similarity=0.758 Sum_probs=313.4
Q ss_pred EeeeecccCCCCCCceEEEEEeecC-CCCccCCCCeEEEeccCCHHHHHHHHHHhCCC--CCceEEEeeCCCCCCcCC--
Q 005624 320 VAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLG-- 394 (687)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~-~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~--~d~~~~i~~~~~~~~~l~-- 394 (687)
|+.+++|++++++|+|+||+||+++ ++++|+|||||+|+|+|+++.|++++++||+. .++.+.++..........
T Consensus 2 ~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T cd06202 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGII 81 (406)
T ss_pred cceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCcccccc
Confidence 5678999999999999999999987 69999999999999999999999999999984 477787775333221100
Q ss_pred CCCCCCCCC-cCcHHHHHHHhhhhcCCCCh--------------------------hHHHHHHHhcCCCHHHHHHhCCCC
Q 005624 395 KSTLPPTFP-PCSLRTALTKYADLLSSPKK--------------------------DEYAQWIVASQRSLLEVMSEFPSA 447 (687)
Q Consensus 395 ~~~~~~~~p-p~tl~~~l~~y~Dl~~~p~k--------------------------~~y~~~i~~~~~~l~dvl~~fps~ 447 (687)
....++++| |+|++++|++|+||+++|++ ++|.+|+...++|++|+|.+||++
T Consensus 82 ~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~dvL~~f~s~ 161 (406)
T cd06202 82 KTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGKGSSEYEDWKWYKNPNILEVLEEFPSL 161 (406)
T ss_pred ccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHhccCCCHHHHHHhCCcC
Confidence 011234555 99999999999999999987 357888889999999999999999
Q ss_pred CCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCC--CccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005624 448 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 448 ~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~--g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~ 525 (687)
++|++.|++. +|+++||+|||||+|..+++.++++|+++.+.++. |+.+.|+||+||+++.+|+ .++|+++
T Consensus 162 ~~~~~~ll~~-lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~~~ 234 (406)
T cd06202 162 QVPASLLLTQ-LPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGD------TVPCFVR 234 (406)
T ss_pred CCCHHHHHHh-CcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCC------EEEEEEe
Confidence 9999999975 59999999999999987789999999998776553 4567899999999988865 4777877
Q ss_pred e-CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhh----hcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCc
Q 005624 526 Q-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ----EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS 600 (687)
Q Consensus 526 ~-~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~----~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~ 600 (687)
. +.|++|.++.+|+||||+||||||||||||+|.... ..+...++++||||||+++.|++|++||+++.+.+.++
T Consensus 235 ~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~~~ 314 (406)
T cd06202 235 SAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGVLT 314 (406)
T ss_pred eCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCCCc
Confidence 4 579999888899999999999999999999986542 12234589999999999966999999999999999998
Q ss_pred EEEEEEecCCC-CccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005624 601 QLIVAFSREGP-TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQM 678 (687)
Q Consensus 601 ~l~~afSr~~~-~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~ 678 (687)
++++||||++. .++||||+|.++.+.+|+++ ..+++|||||| +.|+++|+++|.+|++++++++.++|++|+++|++
T Consensus 315 ~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~-~~M~~~V~~~L~~i~~~~~~~s~~~A~~~~~~l~~ 393 (406)
T cd06202 315 EVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGD-VTMAEDVSQTIQRILAEHGNMSAEEAEEFILKLRD 393 (406)
T ss_pred eEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCC-CchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999864 68999999999999999987 68999999999 58999999999999999999999999999999999
Q ss_pred CCCeEEeeC
Q 005624 679 TGRYLRDVW 687 (687)
Q Consensus 679 ~gRy~~Dvw 687 (687)
+|||++|||
T Consensus 394 ~gRy~~dvw 402 (406)
T cd06202 394 ENRYHEDIF 402 (406)
T ss_pred cCCeEEEec
Confidence 999999999
|
The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation. |
| >cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-71 Score=602.78 Aligned_cols=351 Identities=44% Similarity=0.812 Sum_probs=314.7
Q ss_pred EeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCCC
Q 005624 320 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 399 (687)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~~ 399 (687)
|+.|++|++++++++|+||+|++++++++|+|||||+|+|+|+++.|++++++||+++++.+.++..+. .+.+
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~-------~~~~ 74 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNEQ-------QRGK 74 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEecccc-------cccC
Confidence 567899999999999999999998889999999999999999999999999999999999998875331 1335
Q ss_pred CCCC-cCcHHHHHHHhhhhcCCCCh----------------------------hHHHHHHHhcCCCHHHHHHhCCCCCCC
Q 005624 400 PTFP-PCSLRTALTKYADLLSSPKK----------------------------DEYAQWIVASQRSLLEVMSEFPSAKPP 450 (687)
Q Consensus 400 ~~~p-p~tl~~~l~~y~Dl~~~p~k----------------------------~~y~~~i~~~~~~l~dvl~~fps~~~p 450 (687)
.|+| |+|++++|++|+||+++|++ ++|.+| .+++++|+|.+||++++|
T Consensus 75 ~~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~ 151 (382)
T cd06207 75 PPFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPT 151 (382)
T ss_pred CCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCC
Confidence 6788 99999999999999999988 123333 689999999999999999
Q ss_pred hHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcc
Q 005624 451 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK 530 (687)
Q Consensus 451 ~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~ 530 (687)
++.|++. +|+++||+|||||+|..+++.++|+|+++.+.++.++.+.|+||+||.++.+|+ .+.|+++.|.|+
T Consensus 152 ~~~ll~~-lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~~p~g~F~ 224 (382)
T cd06207 152 LEQLLEL-CPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQ------RVTVFIKKSSFK 224 (382)
T ss_pred HHHHHHh-CcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCC------EEEEEEECCccc
Confidence 9999985 599999999999999877789999999998888888889999999999887765 578888889999
Q ss_pred cCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCC
Q 005624 531 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 610 (687)
Q Consensus 531 lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~ 610 (687)
+|.++.+|+||||+||||||||||++++......+...++++||||||+++.|++|++||+++.+.+.++++++||||++
T Consensus 225 lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~ 304 (382)
T cd06207 225 LPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQ 304 (382)
T ss_pred CCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCC
Confidence 99888899999999999999999999998654334445899999999999559999999999999999889999999998
Q ss_pred CCccccchhhhcchHHHHhcccCC-cEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 611 PTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 611 ~~k~yVq~~l~e~~~~v~~~i~~~-~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
..++||||++.++.+.+++++.++ ++||||||+..|+++|+++|.++++++++++.++|++++++|+++|||++|||
T Consensus 305 ~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 305 PKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred CCceEhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 889999999999989999888655 49999999434999999999999999999999999999999999999999999
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe |
| >cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-70 Score=603.46 Aligned_cols=353 Identities=39% Similarity=0.726 Sum_probs=312.8
Q ss_pred EeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCC--CCceEEEeeCCCCCCcCCCCC
Q 005624 320 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLGKST 397 (687)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~--~d~~~~i~~~~~~~~~l~~~~ 397 (687)
|..+++||+++++++|+||+||++++++.|+|||||+|+|+|+++.|++++++||++ +|+.+.++.....+. .+..
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~ 79 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKK--KNAK 79 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccc--cccc
Confidence 677899999999999999999998889999999999999999999999999999999 888888874222111 1124
Q ss_pred CCCCCC-cCcHHHHHHHhhhhcCCCCh----------------------------hHHHHHHHhcCCCHHHHHHhCCCCC
Q 005624 398 LPPTFP-PCSLRTALTKYADLLSSPKK----------------------------DEYAQWIVASQRSLLEVMSEFPSAK 448 (687)
Q Consensus 398 ~~~~~p-p~tl~~~l~~y~Dl~~~p~k----------------------------~~y~~~i~~~~~~l~dvl~~fps~~ 448 (687)
++.+|| |+|++++|++|+||+++|++ ++|.+|+...++|++|||++||+++
T Consensus 80 ~~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~ 159 (398)
T cd06203 80 VPVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCR 159 (398)
T ss_pred cCCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCC
Confidence 677889 99999999999999999987 4588899999999999999999999
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccC-----CCCCCCCCceeeEE
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSL-----PMEKSNDCSWAPIF 523 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~-----~~~~~~~~~~~~v~ 523 (687)
+|++.+++. +|+++||+|||||+|..+++.++|+|+++.+.+ .|+||+||+++. +|+ .+++.
T Consensus 160 ~pl~~ll~~-lp~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~G~------~v~i~ 226 (398)
T cd06203 160 PPLSLLIEH-LPRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSHGV------KVPFY 226 (398)
T ss_pred CCHHHHHHh-CccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCCCC------EEEEE
Confidence 999999975 599999999999999877899999998885432 699999999987 554 47787
Q ss_pred Ee-eCCcccCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhh--cCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCC
Q 005624 524 VR-QSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQE--AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 599 (687)
Q Consensus 524 v~-~~~F~lp~~-~~~PiImIa~GTGIAPfrsflq~r~~~~~--~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~ 599 (687)
++ .+.|.+|.+ +.+|+||||+||||||||||+|++..... .+...++++||||||+++.|++|++||+++.+.|.+
T Consensus 227 ~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~ 306 (398)
T cd06203 227 LRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGIL 306 (398)
T ss_pred EecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCC
Confidence 75 567999877 67999999999999999999999976431 123358999999999995599999999999999999
Q ss_pred cEEEEEEecCCC---CccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005624 600 SQLIVAFSREGP---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 675 (687)
Q Consensus 600 ~~l~~afSr~~~---~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~ 675 (687)
+++++||||++. .++||||+|.++.+++++++ ..+++||||||++.|+++|+++|.+|++++++++.++|++|+++
T Consensus 307 ~~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~ 386 (398)
T cd06203 307 TRLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLAR 386 (398)
T ss_pred ceEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 899999999876 58999999999999999987 57899999999789999999999999999999999999999999
Q ss_pred HHHCCCeEEeeC
Q 005624 676 LQMTGRYLRDVW 687 (687)
Q Consensus 676 l~~~gRy~~Dvw 687 (687)
|+++|||++|||
T Consensus 387 l~~~gRy~~dvw 398 (398)
T cd06203 387 LRKEDRYLEDVW 398 (398)
T ss_pred HHHcCCeeeecC
Confidence 999999999999
|
In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme |
| >cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-69 Score=587.32 Aligned_cols=351 Identities=36% Similarity=0.643 Sum_probs=310.4
Q ss_pred EEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCC
Q 005624 319 NVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 398 (687)
Q Consensus 319 ~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~ 398 (687)
+|+.+++|++++++|+|+||+|++++ +++|+|||||+|+|+|+++.|+++|++||+++++.+.++..+. ..
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~~-~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~--------~~ 71 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLPD-GMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGS--------AT 71 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECCC-CCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCC--------CC
Confidence 36789999999999999999999975 8999999999999999999999999999999999998875221 23
Q ss_pred CCCCC-cCcHHHHHHHhhhhcCCCCh------------------------hHHHHHHHhcCCCHHHHHHhCCCCCCChHH
Q 005624 399 PPTFP-PCSLRTALTKYADLLSSPKK------------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGV 453 (687)
Q Consensus 399 ~~~~p-p~tl~~~l~~y~Dl~~~p~k------------------------~~y~~~i~~~~~~l~dvl~~fps~~~p~~~ 453 (687)
+.|+| |+|++++|++|+||+++|+| ++|.+++...++|++|+|.+||++++|+++
T Consensus 72 ~~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~d~l~~f~s~~~~~~~ 151 (384)
T cd06206 72 GLPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLAGEAYAAEVLAKRVSVLDLLERFPSIALPLAT 151 (384)
T ss_pred CCCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhhhhHHHHHHHhcCCCHHHHHHhCCCCCCCHHH
Confidence 45677 99999999999999999987 457788888999999999999999999999
Q ss_pred HHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCC-ccccCccchhhcccCCCCCCCCCceeeEEEe--eCCcc
Q 005624 454 FFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR--QSNFK 530 (687)
Q Consensus 454 ~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g-~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~--~~~F~ 530 (687)
|++. +|+++||+|||||+|..+++.++++|+++.+.++.+ +.+.|+||+||.++.+|+ .+.++++ .|.|.
T Consensus 152 ~l~~-~p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~i~~p~g~F~ 224 (384)
T cd06206 152 FLAM-LPPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGD------SIHVSVRPSHSAFR 224 (384)
T ss_pred HHHh-CcccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCC------eEEEEEecCCCccC
Confidence 9976 499999999999999877789999999887766555 567899999999887765 3566554 47899
Q ss_pred cCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCC
Q 005624 531 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 610 (687)
Q Consensus 531 lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~ 610 (687)
+|.+..+|+||||+|||||||+||++++......+...++++||||||+++.|++|++||+++++.+.+ +++++|||++
T Consensus 225 l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~-~l~~a~Sr~~ 303 (384)
T cd06206 225 PPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGVV-SVRRAYSRPP 303 (384)
T ss_pred CCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCCe-EEEEEecccC
Confidence 998778999999999999999999999976543333457899999999995599999999999986655 8999999987
Q ss_pred CC-ccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCeEEe
Q 005624 611 PT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQG----SLDSSKAESMVKNLQMTGRYLRD 685 (687)
Q Consensus 611 ~~-k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~----~~~~~~a~~~~~~l~~~gRy~~D 685 (687)
.. ++|||++|.++.+.+++++.++++|||||| ++|+++|.++|.+|+.+++ +++.++|++++++|+++|||++|
T Consensus 304 ~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gry~~d 382 (384)
T cd06206 304 GGGCRYVQDRLWAEREEVWELWEQGARVYVCGD-GRMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGRYATD 382 (384)
T ss_pred CCCCEechhhHHhhHHHHHHHHHCCcEEEEECC-CchHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCCeeee
Confidence 54 899999999988899988878899999999 6699999999999999999 99999999999999999999999
Q ss_pred eC
Q 005624 686 VW 687 (687)
Q Consensus 686 vw 687 (687)
||
T Consensus 383 vw 384 (384)
T cd06206 383 VF 384 (384)
T ss_pred cC
Confidence 99
|
NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la |
| >cd06199 SiR Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-68 Score=576.08 Aligned_cols=339 Identities=41% Similarity=0.689 Sum_probs=298.1
Q ss_pred EeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCCC
Q 005624 320 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 399 (687)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~~ 399 (687)
|+.|++|++++++++|+||+||+++++++|+|||||+|+|+|+++.|++++++||+++++.+.+
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~---------------- 65 (360)
T cd06199 2 VLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST---------------- 65 (360)
T ss_pred cceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC----------------
Confidence 6788999999999999999999998899999999999999999999999999999999876531
Q ss_pred CCCC-cCcHHHHHHHhhhhcCCCChhHHHHH----------------HHhcCCCHHHHHHhCC--CCCCChHHHHHHHcC
Q 005624 400 PTFP-PCSLRTALTKYADLLSSPKKDEYAQW----------------IVASQRSLLEVMSEFP--SAKPPLGVFFAAIVP 460 (687)
Q Consensus 400 ~~~p-p~tl~~~l~~y~Dl~~~p~k~~y~~~----------------i~~~~~~l~dvl~~fp--s~~~p~~~~l~~~~p 460 (687)
++| |+|++++|++|+||+++ .+..+..+ .....++++|+|++|| ++++|+|||++. +|
T Consensus 66 -~~~~~~t~~~~l~~~~dl~~~-~~~~l~~~a~~~~~~~~l~~~~~~~~~~~~~~~d~L~~f~~~~~~~~~gq~l~l-~~ 142 (360)
T cd06199 66 -VGGGTLPLREALIKHYEITTL-LLALLESYAADTGALELLALAALEAVLAFAELRDVLDLLPIPPARLTAEELLDL-LR 142 (360)
T ss_pred -CCCCcccHHHHHHhhhhhccC-hHHHHHHhcCCcchHHHHhhcCHHHHHccCcHHHHHHhccccCCCCCHHHHHHh-Cc
Confidence 234 79999999999999987 33111110 1235689999999999 999999999975 59
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEee-CCcccCCCCCCCe
Q 005624 461 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ-SNFKLPADAKVPI 539 (687)
Q Consensus 461 ~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~-~~F~lp~~~~~Pi 539 (687)
+++||+|||||+|..++++++++|+++.+.+. ++.+.|+||+||+++.+.|+ .+.++++. +.|++|.++.+|+
T Consensus 143 ~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~Gd-----~v~v~~~~~~~F~lp~~~~~pi 216 (360)
T cd06199 143 PLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKEGD-----TVPVFVQPNPHFRLPEDPDAPI 216 (360)
T ss_pred CCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCCCC-----EEEEEEecCCCcCCCCCCCCCE
Confidence 99999999999998778899999998876653 56788999999998763333 57788765 5799998888999
Q ss_pred EEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchh
Q 005624 540 IMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHK 619 (687)
Q Consensus 540 ImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~ 619 (687)
||||+||||||||||+|++..... .++++||||||++..|++|++||+++.+.+.++++++||||++..++||||+
T Consensus 217 ImIa~GtGIAP~~s~l~~~~~~~~----~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~Sr~~~~~~yVq~~ 292 (360)
T cd06199 217 IMVGPGTGIAPFRAFLQEREATGA----KGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAFSRDQAEKVYVQDR 292 (360)
T ss_pred EEEecCcChHHHHHHHHHHHhccC----CCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEEccCCCCCccHHHH
Confidence 999999999999999999876432 3789999999998569999999999999998889999999998888999999
Q ss_pred hhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 620 MMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 620 l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
|.++.+.+++++.++++||||||++.|+++|+++|.+|++++++++.++|++++++|+++|||++|||
T Consensus 293 l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 360 (360)
T cd06199 293 MREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDVY 360 (360)
T ss_pred HHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 99999999998877899999999549999999999999999999999999999999999999999999
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. |
| >PRK06214 sulfite reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-68 Score=592.06 Aligned_cols=349 Identities=38% Similarity=0.671 Sum_probs=306.7
Q ss_pred CCccccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEee
Q 005624 306 GHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHT 385 (687)
Q Consensus 306 ~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~ 385 (687)
+...|+.++|+.++|+.+++|++++++++|+||+||+++++++|+|||||+|+|+|+++.|++++++||+++++.+
T Consensus 159 ~~~~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~---- 234 (530)
T PRK06214 159 GPLGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI---- 234 (530)
T ss_pred cCCccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc----
Confidence 4445678899999999999999999999999999999988999999999999999999999999999999986432
Q ss_pred CCCCCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCCh----------hHHHHH-----------HHhcCCCHHHHHHhC
Q 005624 386 DKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK----------DEYAQW-----------IVASQRSLLEVMSEF 444 (687)
Q Consensus 386 ~~~~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k----------~~y~~~-----------i~~~~~~l~dvl~~f 444 (687)
.++|++++|++|+||.++|++ ++..+. ......+++|+|++|
T Consensus 235 -----------------~~~tlr~~L~~~~Dl~~~p~~~~~~la~~~~~~~~~~l~~L~~~~~~~~~~~~~~vldvL~~f 297 (530)
T PRK06214 235 -----------------GGKTLREALLEDVSLGPAPDGLFELLSYITGGAARKKARALAAGEDPDGDAATLDVLAALEKF 297 (530)
T ss_pred -----------------CCccHHHHHHHheeccCCCHHHHHHHHHhCCcHHHHHHHHhhcccChhhhhhhCcHHHHHHhC
Confidence 257999999999999998754 000111 112347899999999
Q ss_pred CCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEE
Q 005624 445 PSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIF 523 (687)
Q Consensus 445 ps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~ 523 (687)
|++++|+++|++. +|+++||+|||||+|..++++++|+|++|.+.+ .++.+.|+||+||.+ +.+|+ .+.|+
T Consensus 298 p~~~~~~~~lle~-lp~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~Gd------~V~v~ 369 (530)
T PRK06214 298 PGIRPDPEAFVEA-LDPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPGT------RVRVY 369 (530)
T ss_pred CCCCCCHHHHHhh-cCCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCCC------EEEEE
Confidence 9999999999975 599999999999999877889999999887653 567789999999985 55544 47777
Q ss_pred EeeC-CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEE
Q 005624 524 VRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 602 (687)
Q Consensus 524 v~~~-~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l 602 (687)
++.+ +|++|.++.+|+||||+||||||||||+|+|..... .++++||||||+...|++|++||+++.+.+.++++
T Consensus 370 i~~~~gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~----~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l~~l 445 (530)
T PRK06214 370 VQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAATKA----PGRNWLFFGHQRSATDFFYEDELNGLKAAGVLTRL 445 (530)
T ss_pred ecCCCCCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcC----CCCeEEEEEecCChhhhHHHHHHHHHHHhCCceEE
Confidence 7643 499998888999999999999999999999876542 27899999998876799999999999999998889
Q ss_pred EEEEecCCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCe
Q 005624 603 IVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRY 682 (687)
Q Consensus 603 ~~afSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy 682 (687)
+++|||++..|+||||+|.++..++|+++.++++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++|||
T Consensus 446 ~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l~~~gRY 525 (530)
T PRK06214 446 SLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAGRY 525 (530)
T ss_pred EEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCE
Confidence 99999998889999999999999999998889999999997789999999999999999999999999999999999999
Q ss_pred EEeeC
Q 005624 683 LRDVW 687 (687)
Q Consensus 683 ~~Dvw 687 (687)
++|||
T Consensus 526 ~~Dvw 530 (530)
T PRK06214 526 QADVY 530 (530)
T ss_pred EEecC
Confidence 99999
|
|
| >PLN03115 ferredoxin--NADP(+) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=358.29 Aligned_cols=273 Identities=24% Similarity=0.461 Sum_probs=225.9
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCC
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (687)
.|..++|+.++|+.|.+++..+....++||+|+..+ .+.|++|.+++|.|+... .
T Consensus 84 ~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~-~~~f~~GQfv~I~~~g~~------------------------~ 138 (367)
T PLN03115 84 KFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEG-EIPYREGQSIGVIPDGID------------------------K 138 (367)
T ss_pred eeccCCCeEEEEEeecccccCCCCCceEEEEEcCCC-CCCcCCCCEEEEEcCCcC------------------------C
Confidence 477899999999999999988888899999999764 799999999999754210 0
Q ss_pred CCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccc
Q 005624 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYS 468 (687)
Q Consensus 389 ~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YS 468 (687)
+| .+..+|+||
T Consensus 139 ~g---------------------------------------------------------------------~p~~~R~YS 149 (367)
T PLN03115 139 NG---------------------------------------------------------------------KPHKLRLYS 149 (367)
T ss_pred CC---------------------------------------------------------------------CcCceeeee
Confidence 00 112469999
Q ss_pred cCCCCCC---CCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCc-ccCCCCCCCeEEEec
Q 005624 469 ISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNF-KLPADAKVPIIMIGP 544 (687)
Q Consensus 469 IsSsp~~---~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F-~lp~~~~~PiImIa~ 544 (687)
|||+|.. .++.++|+|+.+.+.+..|....|+||+||+++.+|+ .+.|..+.|.| .+|.++.+|+||||+
T Consensus 150 IAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd------~V~v~GP~G~~fllp~~~~~~iImIAg 223 (367)
T PLN03115 150 IASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGA------EVKITGPVGKEMLMPKDPNATIIMLAT 223 (367)
T ss_pred cCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcC------EEEEEeecCCceeCCcCCCCCEEEEeC
Confidence 9999853 2468999998876766677878999999999988876 36677776765 456667789999999
Q ss_pred CCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC----Cccccch
Q 005624 545 GTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP----TKEYVQH 618 (687)
Q Consensus 545 GTGIAPfrsflq~r~~~~~~~-~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~----~k~yVq~ 618 (687)
|||||||+|||+++....... ...++++||||||+.+ |++|.+||+++++... +++++.+|||++. .++|||+
T Consensus 224 GTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~-dlly~dELe~l~~~~p~~f~v~~a~SR~~~~~~G~kgyVqd 302 (367)
T PLN03115 224 GTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQT 302 (367)
T ss_pred CeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHH-HhhHHHHHHHHHHhCCCCEEEEEEEcCCCcccCCcceeehh
Confidence 999999999999876543211 1136899999999996 9999999999998754 7799999999864 5789999
Q ss_pred hhhcchHHHHhccc-CCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 619 KMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 619 ~l~e~~~~v~~~i~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
+|.++.+++|+++. .+++|||||| ++|+++|.++|.+++...| + ++++++++|+++|||+.|||
T Consensus 303 ~i~e~~e~l~~~l~~~~~~vYiCGp-~~M~~~V~~~l~~l~~~~g-~---~~~~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 303 RMAEYAEELWELLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAKDG-I---DWFEYKKQLKKAEQWNVEVY 367 (367)
T ss_pred HHHHHHHHHHhhcccCCeEEEEeCC-HHHHHHHHHHHHHHHHHhC-c---cHHHHHHHHHHCCCeEEecC
Confidence 99999999998884 5789999999 9999999999999999874 4 57889999999999999998
|
|
| >PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=336.01 Aligned_cols=189 Identities=43% Similarity=0.846 Sum_probs=156.6
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCC
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (687)
+|+.++|+.|+|+.+++|++++++|+|+||+||+++++++|+|||||||||+|+++.|++++++||+++|+.+.++....
T Consensus 2 ~~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~ 81 (219)
T PF00667_consen 2 PYSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQ 81 (219)
T ss_dssp SHBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESST
T ss_pred CcCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEeccc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred CCCcCCCCCCCCCCC-cCcHHHHHHHhhhhcCCCCh----------------------------hHHHHHHHhcCCCHHH
Q 005624 389 DGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKK----------------------------DEYAQWIVASQRSLLE 439 (687)
Q Consensus 389 ~~~~l~~~~~~~~~p-p~tl~~~l~~y~Dl~~~p~k----------------------------~~y~~~i~~~~~~l~d 439 (687)
. .....|+| |+|++++|++|+||+++|+| ++|.+|+...+++++|
T Consensus 82 ~------~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~d 155 (219)
T PF00667_consen 82 N------NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLD 155 (219)
T ss_dssp T------SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHH
T ss_pred c------cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHH
Confidence 2 23466888 99999999999999999987 5788888889999999
Q ss_pred HHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchh
Q 005624 440 VMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW 504 (687)
Q Consensus 440 vl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~ 504 (687)
+|.+||++++|+++|++. +|+++||+|||||||..++++++|||++|.+.+..|+.+.|+||+|
T Consensus 156 il~~fps~~~pl~~ll~~-lp~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 156 ILEDFPSCKPPLEELLEL-LPPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp HHHHSTTBTC-HHHHHHH-S-B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred HHhhCcccCCCHHHhhhh-CCCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999975 5999999999999999999999999999999899999999999998
|
Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B .... |
| >cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=329.61 Aligned_cols=262 Identities=49% Similarity=0.895 Sum_probs=223.2
Q ss_pred EeeeecccCCCCCCceEEEEEeecC-CCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCC
Q 005624 320 VAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 398 (687)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~-~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~ 398 (687)
+++++.+++|+|.++++|++|++++ ..+.|+||.++.|.+++
T Consensus 2 ~~~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~------------------------------------- 44 (267)
T cd06182 2 ITVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN------------------------------------- 44 (267)
T ss_pred ccccccccCCCCCCceEEEEEecCCCCcCccCCCCEEEEecCC-------------------------------------
Confidence 4568899999999999999999875 67899999998774221
Q ss_pred CCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCC
Q 005624 399 PPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPS 478 (687)
Q Consensus 399 ~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~ 478 (687)
...+|+|||||.|....+
T Consensus 45 --------------------------------------------------------------~~~~R~ySias~p~~~~~ 62 (267)
T cd06182 45 --------------------------------------------------------------PLQPRYYSIASSPDVDPG 62 (267)
T ss_pred --------------------------------------------------------------CCCCeeEeecCCCCCCCC
Confidence 123699999999975568
Q ss_pred eEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeC-CcccCCCCCCCeEEEecCCcchhHHHHHHH
Q 005624 479 RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQE 557 (687)
Q Consensus 479 ~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~-~F~lp~~~~~PiImIa~GTGIAPfrsflq~ 557 (687)
.++|+|+.+.+....+..+.|.+|+||+++.+|+ .+.+..+.| .|.++.+...|+||||+|||||||++++++
T Consensus 63 ~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~Gd------~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~ 136 (267)
T cd06182 63 EVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLGA------KVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQE 136 (267)
T ss_pred EEEEEEEEEEEecCCCCeeccchhHHHhhCCCCC------EEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHH
Confidence 8999998876666666777899999999987765 466777777 899987777899999999999999999999
Q ss_pred HHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCC-ccccchhhhcchHHHHhcccCCcE
Q 005624 558 RFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT-KEYVQHKMMEKSSDIWNMLSEGAY 636 (687)
Q Consensus 558 r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~-k~yVq~~l~e~~~~v~~~i~~~~~ 636 (687)
++.....+...++++||||+|+++.|++|.+||+++++.+.++++++++||+... ++||++.+.+..+.+++.+.+++.
T Consensus 137 ~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~~~~~~~~~~~~~S~~~~~~~~~v~~~l~~~~~~l~~~l~~~~~ 216 (267)
T cd06182 137 RAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKDGALTRLDVAFSREQAEPKVYVQDKLKEHAEELRRLLNEGAH 216 (267)
T ss_pred HHHhhhccccCCCEEEEEeCCCCcccccHHHHHHHHHhCCCcceEEEEEccCCCCCceehHHHHHHhHHHHHHHHhcCCE
Confidence 8764211222378999999999933999999999999988888999999997653 789999998887777777766779
Q ss_pred EEEECCchh-hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 637 LYVCGDAKS-MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 637 iYvCG~a~~-M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
|||||| +. |+++|.++|.++++++++++.++|++++++|++.|||++|+|
T Consensus 217 vyvCGp-~~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (267)
T cd06182 217 IYVCGD-AKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW 267 (267)
T ss_pred EEEECC-cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeEEecC
Confidence 999999 77 999999999999999999999999999999999999999999
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t |
| >PLN03116 ferredoxin--NADP+ reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=304.85 Aligned_cols=274 Identities=27% Similarity=0.446 Sum_probs=213.0
Q ss_pred ccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCC
Q 005624 310 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKED 389 (687)
Q Consensus 310 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~ 389 (687)
|....|+.++|+..+.++.|.+..++++|.|+.+ ..+.|+||.++.|.++... . + .+
T Consensus 19 ~~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~-~~~~f~aGQy~~l~~~~~~--~-----------------~---~~ 75 (307)
T PLN03116 19 YKPKAPYTATIVSVERIVGPKAPGETCHIVIDHG-GNVPYWEGQSYGVIPPGTN--P-----------------K---KP 75 (307)
T ss_pred ccCCCCEEEEEEeeEEcccCCCCCceEEEEEecC-CCCceecCceEeeeCCCCC--h-----------------h---hc
Confidence 4456788999999999987777778999999975 4789999999988644210 0 0 00
Q ss_pred CCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCccccccc
Q 005624 390 GTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSI 469 (687)
Q Consensus 390 ~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSI 469 (687)
| .+...|+|||
T Consensus 76 g---------------------------------------------------------------------~~~~~R~YSI 86 (307)
T PLN03116 76 G---------------------------------------------------------------------APHNVRLYSI 86 (307)
T ss_pred C---------------------------------------------------------------------CcCCceeEEe
Confidence 0 1123699999
Q ss_pred CCCCCCC---CCeEEEEEEEEEeeCCC-C--c-cccCccchhhcccCCCCCCCCCceeeEEEeeCCccc-CC-CCCCCeE
Q 005624 470 SSSPRVA---PSRIHVTCALVYEKTPT-G--R-VHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKL-PA-DAKVPII 540 (687)
Q Consensus 470 sSsp~~~---~~~i~itv~~v~~~~~~-g--~-~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~l-p~-~~~~PiI 540 (687)
||+|... ..+++|+|+.+.+..+. + . ...|++|+||+++.+|+ .+.|..+.|.|.+ |. +..+|+|
T Consensus 87 aS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~~~~~~~~~~v 160 (307)
T PLN03116 87 ASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGD------KVQITGPSGKVMLLPEEDPNATHI 160 (307)
T ss_pred cCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCC------EEEEEEecCCceeCCCCCCCCcEE
Confidence 9999532 23799999876443331 1 1 25799999999976665 4667777788876 43 5568999
Q ss_pred EEecCCcchhHHHHHHHHHHhhhc-CCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC----Ccc
Q 005624 541 MIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP----TKE 614 (687)
Q Consensus 541 mIa~GTGIAPfrsflq~r~~~~~~-~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~----~k~ 614 (687)
|||+|||||||+||+++++..... ....++++||||+|+.+ |++|.+||++|++.+. .++++.++||+.. .++
T Consensus 161 lIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~-d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~~g 239 (307)
T PLN03116 161 MVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSD-SLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKM 239 (307)
T ss_pred EEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcc-cchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCCcc
Confidence 999999999999999988764321 11236899999999997 9999999999998875 6789999999753 367
Q ss_pred ccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 615 YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 615 yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
||++.|.+..+.++..+..++.+|+||| ++|+++|.++|.+++++.| + +|+++++.|+++|||++|+|
T Consensus 240 ~v~~~l~~~~~~~~~~~~~~~~vYiCGp-~~mv~~v~~~L~~~~~~~g-~---~~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 240 YVQDKIEEYSDEIFKLLDNGAHIYFCGL-KGMMPGIQDTLKRVAEERG-E---SWEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred chhhHHHHHHHHHHhhhcCCcEEEEeCC-HHHHHHHHHHHHHHHHHcC-c---cHHHHHHHHHHcCceEEecC
Confidence 9999998877776666656789999999 9999999999999988864 4 36689999999999999999
|
|
| >cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=300.88 Aligned_cols=272 Identities=29% Similarity=0.479 Sum_probs=213.9
Q ss_pred ccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCC
Q 005624 310 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKED 389 (687)
Q Consensus 310 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~ 389 (687)
|-...|+.+.|+..+.++.+.+...+++++|+. +..+.|+||.++.|.++.... .
T Consensus 3 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~pGQ~v~l~~~~~~~-----------------------~- 57 (286)
T cd06208 3 YKPKNPLIGKVVSNTRLTGPDAPGEVCHIVIDH-GGKLPYLEGQSIGIIPPGTDA-----------------------K- 57 (286)
T ss_pred CCCCCCeEEEEEeceeccCCCCCcceEEEEEeC-CCcccccCCceEEEECCCcch-----------------------h-
Confidence 345667789999999998766667899999997 457899999999886431100 0
Q ss_pred CCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCccccccc
Q 005624 390 GTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSI 469 (687)
Q Consensus 390 ~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSI 469 (687)
--++..+|+|||
T Consensus 58 --------------------------------------------------------------------~g~~~~~R~YSI 69 (286)
T cd06208 58 --------------------------------------------------------------------NGKPHKLRLYSI 69 (286)
T ss_pred --------------------------------------------------------------------cCCCCCceeeEe
Confidence 002234699999
Q ss_pred CCCCCCC---CCeEEEEEEEEEeeCCCC-ccccCccchhhcccCCCCCCCCCceeeEEEeeCCccc-CCCCCCCeEEEec
Q 005624 470 SSSPRVA---PSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKL-PADAKVPIIMIGP 544 (687)
Q Consensus 470 sSsp~~~---~~~i~itv~~v~~~~~~g-~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~l-p~~~~~PiImIa~ 544 (687)
||+|... ++.++|+|+.+...++.+ ..+.|++|+||+++.+|+ .+.|..+.|+|.+ |.+..+|+||||+
T Consensus 70 as~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~~~~~~~~~~~~~vlIag 143 (286)
T cd06208 70 ASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGD------DVQITGPVGKTMLLPEDPNATLIMIAT 143 (286)
T ss_pred cCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCCC------EEEEEeecCCcccCCCCCCCCEEEEec
Confidence 9998642 468999998876544432 456799999999987765 4667777787665 4455679999999
Q ss_pred CCcchhHHHHHHHHHHhhhc-CCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC----Cccccch
Q 005624 545 GTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP----TKEYVQH 618 (687)
Q Consensus 545 GTGIAPfrsflq~r~~~~~~-~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~----~k~yVq~ 618 (687)
|||||||++|++++...... ....++++||||+|+++ |++|.+||+++.++.. ++++++++||++. .++||++
T Consensus 144 GtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~ 222 (286)
T cd06208 144 GTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSD-SLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQD 222 (286)
T ss_pred CccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCcc-chhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCceehhh
Confidence 99999999999998765211 11236899999999997 9999999999998753 6789999999753 5789999
Q ss_pred hhhcchHHHHhccc-CCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 619 KMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 619 ~l~e~~~~v~~~i~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
.+.+..+.+++.+. .+..||+||| ++|+++|.+.|.+++. +..+|++++++|+++|||..|+|
T Consensus 223 ~i~~~~~~l~~~l~~~~~~vYiCGp-~~m~~~v~~~L~~~~~-----~~~~~~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 223 RIAEYAEEIWNLLDKDNTHVYICGL-KGMEPGVDDALTSVAE-----GGLAWEEFWESLKKKGRWHVEVY 286 (286)
T ss_pred HHHHhHHHHHHHHhcCCcEEEEeCC-chHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHcCCeEEecC
Confidence 99987777777664 4469999999 8999999999999997 23579999999999999999999
|
Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then |
| >TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=312.01 Aligned_cols=270 Identities=23% Similarity=0.412 Sum_probs=215.6
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCC
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (687)
.|..++|+.++|+.+++++..+....++||.|+.++..+.|+||.++.|.++... .
T Consensus 136 ~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~------------------------~ 191 (411)
T TIGR03224 136 LYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTD------------------------A 191 (411)
T ss_pred cccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcC------------------------c
Confidence 4677899999999999998776677899999998766789999999998653210 0
Q ss_pred CCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccc
Q 005624 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYS 468 (687)
Q Consensus 389 ~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YS 468 (687)
++ .+..+|+||
T Consensus 192 ~g---------------------------------------------------------------------~~~~~R~YS 202 (411)
T TIGR03224 192 SG---------------------------------------------------------------------KPHYARMYS 202 (411)
T ss_pred CC---------------------------------------------------------------------CcCcceeee
Confidence 00 112369999
Q ss_pred cCCCCCCC---CCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCC-cccCCCCCCCeEEEec
Q 005624 469 ISSSPRVA---PSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN-FKLPADAKVPIIMIGP 544 (687)
Q Consensus 469 IsSsp~~~---~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~-F~lp~~~~~PiImIa~ 544 (687)
|+|+|... .+.++|+|+.+. ....|+.+.|.+|+||+++.+|+ .+.|..+.|. |.+|..+.+|+||||+
T Consensus 203 Ias~~~~~~~~~~~l~l~Vk~v~-~~~~g~~~~G~~S~~L~~lk~Gd------~v~v~GP~G~~f~lp~~~~~~lllIag 275 (411)
T TIGR03224 203 VASPRNGERPGYNNLALTVKRVT-TDHQGNAVRGVASNYLCDLKKGD------KVQVIGPFGSTFLMPNHPESSIMMICT 275 (411)
T ss_pred ecCCCCccCCCCCEEEEEEEEEE-ecCCCCcCcccchhHHhcCCCcC------EEEEEeccCCcccCCCCCCCCEEEEec
Confidence 99987421 147999998774 24566778899999999988766 4666667665 6677655689999999
Q ss_pred CCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCC-CCccccchhhhcc
Q 005624 545 GTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG-PTKEYVQHKMMEK 623 (687)
Q Consensus 545 GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~-~~k~yVq~~l~e~ 623 (687)
|||||||++|++++......+ ..++++||||+|+.+ |++|.+||+++.+.. .+++++|||+. ..++|||+.+.+.
T Consensus 276 GtGIAP~~s~l~~~~~~~~~~-~~~~v~L~~G~Rt~~-dl~y~~eL~~l~~~~--~~~~~~~sr~~~~~~g~V~d~l~~~ 351 (411)
T TIGR03224 276 GTGSAPMRAMTERRRRRRDHG-EGGKLMLFFGARTKE-ELPYFGPLQKLPKDF--IDINFAFSRTPEQPKRYVQDAIRER 351 (411)
T ss_pred ccCcHHHHHHHHHHHHHhhcC-CCCCEEEEEecCccc-cchHHHHHHHHHhcC--ceEEEEeccCCccCcccHhhHHHHh
Confidence 999999999999987643221 237999999999997 999999999998654 35778999964 3689999999988
Q ss_pred hHHHHhccc-CCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 624 SSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 624 ~~~v~~~i~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
.+.+++++. .++.||+||| ++|+++|.+.|.++..+. ++. +++++++|+++|||+.|+|
T Consensus 352 ~~~v~~ll~~~~~~vYiCGp-~~M~~~v~~~L~~~~~~~-~~~---~~~~~~~l~~~~r~~~e~~ 411 (411)
T TIGR03224 352 AADVAALLKDPNTYIYICGL-KGMEEGVLDAFRDVCATN-GLS---WETLEPRLRAEGRLHLETY 411 (411)
T ss_pred HHHHHHHHhcCCcEEEEECC-HHHHHHHHHHHHHHHHHc-CcC---HHHHHHHHHHCCCeEEecC
Confidence 888887774 4689999999 999999999999999765 343 4679999999999999999
|
Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB. |
| >cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=296.93 Aligned_cols=189 Identities=34% Similarity=0.689 Sum_probs=158.5
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe-eCCcccCCCCCCCeEEE
Q 005624 464 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR-QSNFKLPADAKVPIIMI 542 (687)
Q Consensus 464 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~-~~~F~lp~~~~~PiImI 542 (687)
+|+|||+|+|. .+.++|+|+.+ ..|.||+||+++.+|+ .+.+.++ .+.|.++ +..+|+|||
T Consensus 100 ~R~YSias~p~--~g~l~l~Vk~~---------~~G~~S~~L~~l~~Gd------~v~v~~~~~g~F~~~-~~~~~lvlI 161 (289)
T cd06201 100 PRFYSLASSSS--DGFLEICVRKH---------PGGLCSGYLHGLKPGD------TIKAFIRPNPSFRPA-KGAAPVILI 161 (289)
T ss_pred CceEecCCCCC--CCeEEEEEEeC---------CCccchhhHhhCCCcC------EEEEEeccCCCccCC-CCCCCEEEE
Confidence 59999999984 46788887632 4599999999987765 3556553 5789876 447899999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhc
Q 005624 543 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 622 (687)
Q Consensus 543 a~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~e 622 (687)
|+|||||||++|++++.. .++++||||+|+++.|.+|++||+++.+++.+++++.++||++ .++|||+.+..
T Consensus 162 AgGtGIaP~~s~l~~~~~-------~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-~~g~v~~~l~~ 233 (289)
T cd06201 162 GAGTGIAPLAGFIRANAA-------RRPMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-DGAYVQDRLRA 233 (289)
T ss_pred ecCcCHHHHHHHHHhhhc-------cCCEEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-CcccchhHHHH
Confidence 999999999999997521 2689999999998558999999999999888888999999975 48999999988
Q ss_pred chHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 623 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 623 ~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
..+.+..++.+++.||+||| ++|+++|.+.|.+|+.+.+ + -+..|+++|||.+|||
T Consensus 234 ~~~~l~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~-~-------~~~~~~~~g~~~~d~y 289 (289)
T cd06201 234 DAERLRRLIEDGAQIMVCGS-RAMAQGVAAVLEEILAPQP-L-------SLDELKLQGRYAEDVY 289 (289)
T ss_pred hHHHHHHHHHCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-c-------CHHHHHHCCCEEeecC
Confidence 77777776767899999999 8999999999999998764 2 3888999999999998
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F |
| >cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=294.35 Aligned_cols=210 Identities=33% Similarity=0.551 Sum_probs=172.2
Q ss_pred ChHHHHHHHcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe-eC
Q 005624 450 PLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR-QS 527 (687)
Q Consensus 450 p~~~~l~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~-~~ 527 (687)
-+|||+.+..+. ..+|+|||||+|. ++.++|+|+.+.. +.| ..|.||+||++....++ .+.|..+ ++
T Consensus 33 ~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~--~~~--~~G~~S~~L~~~~~~Gd-----~v~i~gp~gg 101 (245)
T cd06200 33 QAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRH--ADG--GLGLGSGWLTRHAPIGA-----SVALRLRENP 101 (245)
T ss_pred cCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEecc--CCC--CCeeechhhhhCCCCCC-----EEEEEecCCC
Confidence 478988655342 5789999999985 4789988876522 112 35999999998643333 4667665 45
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
.|.+|. ..+|+||||+|||||||+||++++.... .++++||||||+.+.|++|.+||++|.+.+.++++++++|
T Consensus 102 ~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~~-----~~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~~s 175 (245)
T cd06200 102 GFHLPD-DGRPLILIGNGTGLAGLRSHLRARARAG-----RHRNWLLFGERQAAHDFFCREELEAWQAAGHLARLDLAFS 175 (245)
T ss_pred cccCCC-CCCCEEEEecCcChHHHHHHHHHHHhcc-----CCCeEEEEecCCccccHhHHHHHHHHHHCCCcceEEEEEc
Confidence 788875 5689999999999999999999987543 2578999999998548999999999999998889999999
Q ss_pred cCCCCccccchhhhcchHHHHhcccCCcEEEEECCch-hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEee
Q 005624 608 REGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAK-SMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDV 686 (687)
Q Consensus 608 r~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~-~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dv 686 (687)
|++..++|||+.+.++.+.+++++..+++||+||| + +|+++|.+.|.+++++. .+++|+++|||++|+
T Consensus 176 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp-~~~m~~~v~~~l~~~~~~~----------~~~~~~~~~r~~~d~ 244 (245)
T cd06200 176 RDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGS-LQGMAPGVDAVLDEILGEE----------AVEALLAAGRYRRDV 244 (245)
T ss_pred cCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECC-chhhhHHHHHHHHHHHHHH----------HHHHHHHCCCeEEec
Confidence 98767899999999887777776666789999999 6 99999999999999763 488999999999999
Q ss_pred C
Q 005624 687 W 687 (687)
Q Consensus 687 w 687 (687)
|
T Consensus 245 ~ 245 (245)
T cd06200 245 Y 245 (245)
T ss_pred C
Confidence 9
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD |
| >PRK09004 FMN-binding protein MioC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=266.56 Aligned_cols=144 Identities=22% Similarity=0.282 Sum_probs=127.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|++|+|+|||||||||.+|++|++.+.+.+. .++++++.+ + +++.+++.+||++||||+|+||+|++.|+
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~g~--~~~~~~~~~--~------~~l~~~~~li~~~sT~G~Ge~p~~~~~f~ 70 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEEAGF--STETLHGPL--L------DDLSASGLWLIVTSTHGAGDLPDNLQPFF 70 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHHcCC--ceEEeccCC--H------HHhccCCeEEEEECCCCCCCCChhHHHHH
Confidence 5689999999999999999999999987763 456666543 2 35778899999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCC--CcHHhHHHHHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 260 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L 260 (687)
+||++. ...|++++||||||||+.|++||.+++.++++|+++||+++.|++++|++. ..|++|++|.+.+|..|
T Consensus 71 ~~L~~~---~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 71 EELQEQ---KPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred HHHHhc---CCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHHHHHHHhC
Confidence 999864 235999999999999999999999999999999999999999999999864 36899999999988753
|
|
| >PRK05723 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=265.75 Aligned_cols=147 Identities=22% Similarity=0.224 Sum_probs=122.6
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
++|.|+|||||||||.+|++|++.+.+.+. .+.++ .....++ .... ..+.+||++||||+|+||+|+..|++
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~~g~--~~~~~--~~~~~~~---~~~~-~~~~li~~~sT~G~Ge~Pd~~~~f~~ 72 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKAAGF--EAWHN--PRASLQD---LQAF-APEALLAVTSTTGMGELPDNLMPLYS 72 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHCCC--ceeec--CcCCHhH---HHhC-CCCeEEEEECCCCCCCCchhHHHHHH
Confidence 579999999999999999999999987653 22322 2222211 1111 23789999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccccCC--CCcHHhHHHHHHHHHHHHH
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDD--QCIEDDFSAWRELVWPELD 261 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~--~~~e~~f~~W~~~l~~~L~ 261 (687)
||.+.. ...|++++||||||||++| ++||.++++++++|+++||+|+++++++|++ .+.|++|.+|++.+|++|.
T Consensus 73 ~L~~~~--~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~~W~~~~~~~l~ 150 (151)
T PRK05723 73 AIRDQL--PAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLDASETVTPETDAEPWLAEFAAALK 150 (151)
T ss_pred HHHhcC--ccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEeecCCCCChHHHHHHHHHHHHHHhc
Confidence 998642 1269999999999999999 8999999999999999999999999999987 4689999999999998773
|
|
| >PRK08105 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=262.66 Aligned_cols=145 Identities=26% Similarity=0.385 Sum_probs=127.1
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|++|.|+|||||||||.+|++|++.+.+.+ ..+.++++++++. ..+.+++.+||++||||+|+||+|+..|+
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~~g--~~~~~~~~~~~~~------~~~~~~~~vi~~~sT~G~Ge~p~~~~~f~ 72 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTAQG--HEVTLFEDPELSD------WQPYQDELVLVVTSTTGQGDLPDSIVPLF 72 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHhCC--CceEEechhhCCc------hhcccCCeEEEEECCCCCCCCChhHHHHH
Confidence 568999999999999999999999998775 4567888876542 12345689999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCC--CcHHhHHHHHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 260 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L 260 (687)
++|++. ...|++++||||||||++|++||.++++++++|+++||++++|++++|++. +.|+.|++|.++ |..+
T Consensus 73 ~~l~~~---~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~-~~~~ 147 (149)
T PRK08105 73 QALKDT---AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWVEQ-WGTL 147 (149)
T ss_pred HHHHhc---CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHHHH-HHHH
Confidence 999853 236999999999999999999999999999999999999999999999855 478999999999 7654
|
|
| >PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-26 Score=218.47 Aligned_cols=138 Identities=38% Similarity=0.618 Sum_probs=121.3
Q ss_pred EEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHH-HHHHHHH
Q 005624 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA-RFYKWFT 187 (687)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~-~F~~~L~ 187 (687)
|+|+|+|||||.+|+.|++.|.+++ ..++++++++++.+ ...+..+++++|++||||+|+||+++. .|.+|+.
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~~g--~~~~~~~~~~~~~~----~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~ 74 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRERG--VEVRVVDLDDFDDS----PSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLE 74 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHHTT--SEEEEEEGGGSCHH----HHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHH
T ss_pred CEEECCchhHHHHHHHHHHHHHHcC--Cceeeechhhhhhh----hhhhhhhceeeEeecccCCCcchhhhhhhhhhccc
Confidence 8999999999999999999999875 56789999998842 236788999999999999999999998 6666766
Q ss_pred hhc--CCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCC--CcHHhHHHH
Q 005624 188 EQK--EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAW 252 (687)
Q Consensus 188 ~~~--~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W 252 (687)
... .....+++++|+|||+||+.|.+||.++|.++++|+++|++++.|++++|+.. +.+++|++|
T Consensus 75 ~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~~~d~~~~~~~e~~~~~W 143 (143)
T PF00258_consen 75 LKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLLEIDEAPSDDLEEDFEEW 143 (143)
T ss_dssp HHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSEEEETTTHGGHHHHHHHH
T ss_pred cccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcEEEecCCCcChHHHHhCC
Confidence 431 12346899999999999999988999999999999999999999999999976 789999999
|
Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A .... |
| >PRK07308 flavodoxin; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-24 Score=201.54 Aligned_cols=140 Identities=24% Similarity=0.285 Sum_probs=117.7
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|+++.|+|+|+|||||++|+.|++.+.+.+ ..+++.++++.+. ..+.+++.+||++||||+|++|+++..|+
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~~g--~~~~~~~~~~~~~------~~l~~~d~vi~g~~t~g~G~~p~~~~~fl 72 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLRELG--HDVDVDECTTVDA------SDFEDADIAIVATYTYGDGELPDEIVDFY 72 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHhCC--CceEEEecccCCH------hHhccCCEEEEEeCccCCCCCCHHHHHHH
Confidence 457999999999999999999999998765 3467888887764 34778899999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCC--cHHhHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC--IEDDFSAWRELV 256 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~--~e~~f~~W~~~l 256 (687)
++|.+. .+++++|+|||+||+.|+|||.+++.++++|.++||+++.+....+...+ ..+...+|.++|
T Consensus 73 ~~l~~~-----~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~l 142 (146)
T PRK07308 73 EDLADL-----DLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKVDLAAEDEDIERLEAFAEEL 142 (146)
T ss_pred HHHhcC-----CCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 999763 48899999999999999999999999999999999999988776655432 233445565554
|
|
| >cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-24 Score=214.32 Aligned_cols=187 Identities=27% Similarity=0.463 Sum_probs=142.6
Q ss_pred CChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005624 449 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 449 ~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~ 525 (687)
..+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.++.+|+ .+.|..+
T Consensus 23 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~---------~~G~~s~~l~~~~~G~------~v~i~gP 86 (223)
T cd00322 23 FKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIV---------PGGPFSAWLHDLKPGD------EVEVSGP 86 (223)
T ss_pred cCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEe---------CCCchhhHHhcCCCCC------EEEEECC
Confidence 3578888655553 56899999999863 36788888654 2589999999986655 4666667
Q ss_pred eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005624 526 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 605 (687)
Q Consensus 526 ~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~a 605 (687)
.|+|.++.+..+|+||||+|||||||+++++++.... ..++++||||+|+.+ |++|.+||+++.+.+..++++++
T Consensus 87 ~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 161 (223)
T cd00322 87 GGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK----PGGEITLLYGARTPA-DLLFLDELEELAKEGPNFRLVLA 161 (223)
T ss_pred CcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC----CCCcEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEE
Confidence 7888766566789999999999999999999987653 126899999999997 99999999999998777889999
Q ss_pred EecCCCCccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 606 FSREGPTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 606 fSr~~~~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
++|+.....+.++.+..+........ ..+..+|+||| ++|++.+.+.|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp-~~m~~~~~~~L~~~ 213 (223)
T cd00322 162 LSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGP-PAMAKAVREALVSL 213 (223)
T ss_pred ecCCCCCCCcccceeeHHHHHHhhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 99876544444433321111111111 35789999999 89999999988654
|
FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in |
| >PRK10926 ferredoxin-NADP reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=217.66 Aligned_cols=184 Identities=20% Similarity=0.242 Sum_probs=134.3
Q ss_pred ChHHHHHHHcC--C-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEee
Q 005624 450 PLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 450 p~~~~l~~~~p--~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~ 526 (687)
-+|||+.+.++ . ...|+|||+|+|. .+.++++++.+ ..|.+|+||+++.+|+ .+.|..+.
T Consensus 32 ~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~gp~ 94 (248)
T PRK10926 32 TAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTV---------PEGKLSPRLAALKPGD------EVQVVSEA 94 (248)
T ss_pred CCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEe---------CCCCcChHHHhCCCCC------EEEEecCC
Confidence 46888754332 2 2359999999985 34688777644 3589999999877765 35565554
Q ss_pred -CCcccCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcC-CCcEEE
Q 005624 527 -SNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQLI 603 (687)
Q Consensus 527 -~~F~lp~~-~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g-~~~~l~ 603 (687)
+.|.++.. ..+|+||||+|||||||+++++++...+. .++++||||+|+.+ |++|.+||+++++.. ..++++
T Consensus 95 ~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~v~ 169 (248)
T PRK10926 95 AGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLER----FKNLVLVHAARYAA-DLSYLPLMQELEQRYEGKLRIQ 169 (248)
T ss_pred CcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCC----CCcEEEEEeCCcHH-HHHHHHHHHHHHHhCcCCEEEE
Confidence 55667644 34799999999999999999999754332 26899999999996 999999999998875 356899
Q ss_pred EEEecCCC---Cccccchhhhcch-HHHHh-cc-cCCcEEEEECCchhhHHHHHHHHHH
Q 005624 604 VAFSREGP---TKEYVQHKMMEKS-SDIWN-ML-SEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 604 ~afSr~~~---~k~yVq~~l~e~~-~~v~~-~i-~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+++||++. .+++|++.+.+.. ..... .+ ..+..+|+||| ++|++++.+.|.+
T Consensus 170 ~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp-~~Mv~~~~~~l~~ 227 (248)
T PRK10926 170 TVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGN-PQMVRDTQQLLKE 227 (248)
T ss_pred EEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECC-HHHHHHHHHHHHH
Confidence 99998653 2567877654321 11111 12 35689999999 8999999887765
|
|
| >cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=212.27 Aligned_cols=182 Identities=20% Similarity=0.324 Sum_probs=142.1
Q ss_pred CCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEee
Q 005624 448 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 448 ~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~ 526 (687)
+..+|||+.+.+|....|+|||+|.|.. .+.+.|+|+.+ ..|.+|++|.+ +.+|+ .+.|..+.
T Consensus 25 ~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~ 88 (224)
T cd06189 25 DFLAGQYLDLLLDDGDKRPFSIASAPHE-DGEIELHIRAV---------PGGSFSDYVFEELKENG------LVRIEGPL 88 (224)
T ss_pred ccCCCCEEEEEcCCCCceeeecccCCCC-CCeEEEEEEec---------CCCccHHHHHHhccCCC------EEEEecCC
Confidence 3457888865556667899999999853 46788887643 35888999876 66655 35666667
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|.|.++.+...++||||+|||||||++++++...... ..+++|+||+|+.. |++|.+||+++.+.+.+++++.++
T Consensus 89 G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 163 (224)
T cd06189 89 GDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQGS----KRPIHLYWGARTEE-DLYLDELLEAWAEAHPNFTYVPVL 163 (224)
T ss_pred ccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcCC----CCCEEEEEecCChh-hccCHHHHHHHHHhCCCeEEEEEe
Confidence 8888876667899999999999999999999876431 26899999999996 999999999999887777888899
Q ss_pred ecCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
|++.+ .++||++.+.+... + ..+..+|+||| ++|++++.+.|.+
T Consensus 164 s~~~~~~~g~~g~v~~~l~~~~~---~--~~~~~v~vCGp-~~m~~~~~~~l~~ 211 (224)
T cd06189 164 SEPEEGWQGRTGLVHEAVLEDFP---D--LSDFDVYACGS-PEMVYAARDDFVE 211 (224)
T ss_pred CCCCcCCccccccHHHHHHhhcc---C--ccccEEEEECC-HHHHHHHHHHHHH
Confidence 98543 45788877654311 1 24678999999 8999999988864
|
Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD. |
| >cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-23 Score=219.66 Aligned_cols=179 Identities=17% Similarity=0.339 Sum_probs=135.1
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEEEe
Q 005624 464 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIG 543 (687)
Q Consensus 464 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiImIa 543 (687)
.|+|||+|+|.. .+.++|+|+.........+...|.+|+||.++.+|+ .+.|..+.|.|.++. ..+|+||||
T Consensus 86 ~R~ySias~p~~-~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~~vlIA 157 (283)
T cd06188 86 SRAYSLANYPAE-EGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGD------KVTASGPFGEFFIKD-TDREMVFIG 157 (283)
T ss_pred ccccCcCCCCCC-CCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCC------EEEEECccccccccC-CCCcEEEEE
Confidence 499999999863 468998886543211111345799999999977765 356666778898863 468999999
Q ss_pred cCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC------Cccccc
Q 005624 544 PGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYVQ 617 (687)
Q Consensus 544 ~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~------~k~yVq 617 (687)
+|||||||++++++++..... ..+++||||+|+.+ |.+|.+||+++++++..+++++++|++.. .++||+
T Consensus 158 gGtGItP~~s~l~~~~~~~~~---~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~ 233 (283)
T cd06188 158 GGAGMAPLRSHIFHLLKTLKS---KRKISFWYGARSLK-ELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIH 233 (283)
T ss_pred ecccHhHHHHHHHHHHhcCCC---CceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeec
Confidence 999999999999997654321 25899999999986 99999999999988777788889898531 357888
Q ss_pred hhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 618 HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 618 ~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
+.+.+.. +.... ..+..+|+||| ++|++++.+.|.+.
T Consensus 234 ~~~~~~~--~~~~~~~~~~~vyiCGP-~~m~~~~~~~l~~~ 271 (283)
T cd06188 234 QVLLENY--LKKHPAPEDIEFYLCGP-PPMNSAVIKMLDDL 271 (283)
T ss_pred HHHHHHH--hccCCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 8775542 11111 23568999999 99999999988754
|
(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain. |
| >PRK08051 fre FMN reductase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-23 Score=210.78 Aligned_cols=182 Identities=18% Similarity=0.233 Sum_probs=137.2
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhh-cccCCCCCCCCCceeeEEEeeC
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWM-KNSLPMEKSNDCSWAPIFVRQS 527 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L-~~~~~~~~~~~~~~~~v~v~~~ 527 (687)
..+|||+.+.+|....|+|||+|.|.. .+.++|+|+.+ ..|..|+++ .++.+|+ .+.|..+.|
T Consensus 30 ~~pGQ~v~l~~~~~~~r~ySias~p~~-~~~l~~~v~~~---------~~~~~~~~~~~~l~~G~------~v~v~gP~G 93 (232)
T PRK08051 30 FRAGQYLMVVMGEKDKRPFSIASTPRE-KGFIELHIGAS---------ELNLYAMAVMERILKDG------EIEVDIPHG 93 (232)
T ss_pred cCCCCEEEEEcCCCcceeecccCCCCC-CCcEEEEEEEc---------CCCcchHHHHHHcCCCC------EEEEEcCCC
Confidence 357888765456667899999999853 46788877643 124445555 5566654 466767778
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
+|.++.+..+|+||||+||||||+++++++...... ..+++|+||+|+.+ |.+|.+||+++++++..++++.++|
T Consensus 94 ~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~----~~~v~l~~g~r~~~-~~~~~~el~~l~~~~~~~~~~~~~~ 168 (232)
T PRK08051 94 DAWLREESERPLLLIAGGTGFSYARSILLTALAQGP----NRPITLYWGGREED-HLYDLDELEALALKHPNLHFVPVVE 168 (232)
T ss_pred ceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhCC----CCcEEEEEEeccHH-HhhhhHHHHHHHHHCCCcEEEEEeC
Confidence 888776566899999999999999999999876432 26899999999997 9999999999999877778999998
Q ss_pred cCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHH-HHH
Q 005624 608 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL-HTI 657 (687)
Q Consensus 608 r~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L-~~i 657 (687)
++++ .++||++.+.++.. + ..+..+|+||| ++|+++|.+.| .+.
T Consensus 169 ~~~~~~~~~~g~v~~~l~~~~~---~--~~~~~vyicGp-~~m~~~v~~~l~~~~ 217 (232)
T PRK08051 169 QPEEGWQGKTGTVLTAVMQDFG---S--LAEYDIYIAGR-FEMAKIARELFCRER 217 (232)
T ss_pred CCCCCcccceeeehHHHHhhcc---C--cccCEEEEECC-HHHHHHHHHHHHHHc
Confidence 8643 46788777654311 1 13568999999 89999999887 543
|
|
| >cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-23 Score=210.50 Aligned_cols=183 Identities=25% Similarity=0.362 Sum_probs=139.6
Q ss_pred CChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEee
Q 005624 449 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v~~ 526 (687)
..+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||. ++.+|+ .+.|..+.
T Consensus 36 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~ 99 (238)
T cd06211 36 FQAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRLV---------PGGIATTYVHKQLKEGD------ELEISGPY 99 (238)
T ss_pred cCCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEEC---------CCCcchhhHhhcCCCCC------EEEEECCc
Confidence 45788876555544 5799999999863 46788887643 3588999997 566655 35566667
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|+|.++.+..+|+||||+|||||||++++++...... ..+++||||+|+.+ |.+|.+||+++++....++++.++
T Consensus 100 G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 174 (238)
T cd06211 100 GDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGD----TRKITLFFGARTRA-ELYYLDEFEALEKDHPNFKYVPAL 174 (238)
T ss_pred cceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCC----CCcEEEEEecCChh-hhccHHHHHHHHHhCCCeEEEEEE
Confidence 8898876656899999999999999999999876432 25899999999997 999999999999887777888999
Q ss_pred ecCCC------CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 607 SREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 607 Sr~~~------~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
||+.. .++|+++.+.+.... ..++..+|+||| ++|++++.+.|.+.
T Consensus 175 s~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyvCGp-~~m~~~~~~~L~~~ 226 (238)
T cd06211 175 SREPPESNWKGFTGFVHDAAKKHFKN----DFRGHKAYLCGP-PPMIDACIKTLMQG 226 (238)
T ss_pred CCCCCCcCcccccCcHHHHHHHhccc----ccccCEEEEECC-HHHHHHHHHHHHHc
Confidence 98642 356777655432110 114678999999 99999999988753
|
This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases. |
| >PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-23 Score=222.83 Aligned_cols=181 Identities=18% Similarity=0.294 Sum_probs=141.5
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEeeC
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQS 527 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~~ 527 (687)
..+|||+.+.+|....|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.+..+.|
T Consensus 132 ~~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~l~~~l~~G~------~v~v~gP~G 195 (339)
T PRK07609 132 YLAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRHM---------PGGVFTDHVFGALKERD------ILRIEGPLG 195 (339)
T ss_pred cCCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEec---------CCCccHHHHHHhccCCC------EEEEEcCce
Confidence 347899866556566899999999863 36899888643 35889999974 66654 456666778
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
.|.++....+|+||||+|||||||++++++....+. .++++||||+|+.+ |+++.++|++|.++...++++.++|
T Consensus 196 ~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~----~~~i~l~~g~r~~~-dl~~~e~l~~~~~~~~~~~~~~~~s 270 (339)
T PRK07609 196 TFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKGI----QRPVTLYWGARRPE-DLYLSALAEQWAEELPNFRYVPVVS 270 (339)
T ss_pred eEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcCC----CCcEEEEEecCChH-HhccHHHHHHHHHhCCCeEEEEEec
Confidence 999876667899999999999999999999876432 26899999999997 8999999999998777778999999
Q ss_pred cCCC------CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 608 REGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 608 r~~~------~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
|+.+ .++||++.+.+... + ..+..+|+||| ++|++++.+.|.+
T Consensus 271 ~~~~~~~~~g~~G~v~~~~~~~~~---~--~~~~~vy~CGp-~~m~~~~~~~l~~ 319 (339)
T PRK07609 271 DALDDDAWTGRTGFVHQAVLEDFP---D--LSGHQVYACGS-PVMVYAARDDFVA 319 (339)
T ss_pred CCCCCCCccCccCcHHHHHHhhcc---c--ccCCEEEEECC-HHHHHHHHHHHHH
Confidence 8421 45778877654321 1 14578999999 9999999988865
|
|
| >cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-23 Score=210.13 Aligned_cols=185 Identities=22% Similarity=0.216 Sum_probs=139.7
Q ss_pred CChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhccc-CCCCCCCCCceeeEEEee
Q 005624 449 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNS-LPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~-~~~~~~~~~~~~~v~v~~ 526 (687)
..+|||+.+.+|.. .+|+|||+|.|.. .+.++|+|+.+ ..|.+|.||.+. .+++ .+.|..+.
T Consensus 24 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~~---------~~G~~s~~l~~~~~~g~------~v~v~gP~ 87 (232)
T cd06190 24 FLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKRK---------PGGAASNALFDNLEPGD------ELELDGPY 87 (232)
T ss_pred cCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEEc---------CCCcchHHHhhcCCCCC------EEEEECCc
Confidence 35688886655666 6799999998864 46788887643 358899999874 5544 35566667
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|.|.++.+..+|+||||+|||||||++++++...... ....+++|+||+|+.+ |++|.+||+++.+.+..+++++++
T Consensus 88 G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~--~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 164 (232)
T cd06190 88 GLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPY--LSDRPVDLFYGGRTPS-DLCALDELSALVALGARLRVTPAV 164 (232)
T ss_pred ccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhccc--CCCCeEEEEEeecCHH-HHhhHHHHHHHHHhCCCEEEEEEe
Confidence 8887765556899999999999999999999876421 1236899999999987 999999999999887777888999
Q ss_pred ecCCC--------CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 607 SREGP--------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 607 Sr~~~--------~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
|+++. .++|+++.+.+... ....+..||+||| ++|++++.+.|.+.
T Consensus 165 s~~~~~~~~~~~~~~g~v~~~l~~~~~----~~~~~~~vyiCGp-~~m~~~v~~~l~~~ 218 (232)
T cd06190 165 SDAGSGSAAGWDGPTGFVHEVVEATLG----DRLAEFEFYFAGP-PPMVDAVQRMLMIE 218 (232)
T ss_pred CCCCCCcCCCccCCcCcHHHHHHhhcc----CCccccEEEEECC-HHHHHHHHHHHHHh
Confidence 87642 23566665544311 1124689999999 89999998888654
|
Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family. |
| >PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-23 Score=227.32 Aligned_cols=181 Identities=19% Similarity=0.335 Sum_probs=140.3
Q ss_pred CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEE
Q 005624 462 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 541 (687)
Q Consensus 462 l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiIm 541 (687)
...|+|||+|.|.. .+.++|+|+.+......++...|.+|+||+++.+|+ .+.|..+.|+|.++ +..+|+||
T Consensus 208 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~-~~~~~ivl 279 (409)
T PRK05464 208 PVIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGD------KVTISGPFGEFFAK-DTDAEMVF 279 (409)
T ss_pred ceeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCC------EEEEEccccCcEec-CCCceEEE
Confidence 35699999999863 468999987765444445566799999999887766 45677778899876 35689999
Q ss_pred EecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC------Cccc
Q 005624 542 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEY 615 (687)
Q Consensus 542 Ia~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~------~k~y 615 (687)
||+|||||||++++++.+..... .++++||||+|+++ |.+|.+||+++.+...++++++++||+.. .+++
T Consensus 280 IAgGtGIaP~~sml~~~l~~~~~---~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 355 (409)
T PRK05464 280 IGGGAGMAPMRSHIFDQLKRLKS---KRKISFWYGARSLR-EMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGF 355 (409)
T ss_pred EEeccChhHHHHHHHHHHhCCCC---CceEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccce
Confidence 99999999999999987764321 26899999999997 99999999999988777889999987532 3578
Q ss_pred cchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 616 VQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 616 Vq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
|++.+.+.. +.+.. ..+..+|+||| ++|+++|.+.|.+.
T Consensus 356 v~~~l~~~~--l~~~~~~~~~~vyiCGP-~~m~~av~~~L~~~ 395 (409)
T PRK05464 356 IHNVLYENY--LKDHEAPEDCEYYMCGP-PMMNAAVIKMLKDL 395 (409)
T ss_pred eCHHHHHhh--hhhcCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 887765431 11111 24579999999 99999999888653
|
|
| >PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-23 Score=225.58 Aligned_cols=183 Identities=17% Similarity=0.257 Sum_probs=136.9
Q ss_pred ChHHHHHHHcC--C---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEE
Q 005624 450 PLGVFFAAIVP--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIF 523 (687)
Q Consensus 450 p~~~~l~~~~p--~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~ 523 (687)
.+|||+.+.+| . ..+|+|||+|+|. .+.+.|+|+.+ ..|.+|+||.+ +.+|+ .+.|.
T Consensus 186 ~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v~ 248 (399)
T PRK13289 186 KPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKRE---------AGGKVSNYLHDHVNVGD------VLELA 248 (399)
T ss_pred CCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEEC---------CCCeehHHHhhcCCCCC------EEEEE
Confidence 47888765443 1 1349999999985 35788877532 34999999987 76765 35666
Q ss_pred EeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEE
Q 005624 524 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 603 (687)
Q Consensus 524 v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~ 603 (687)
.+.|.|.++.+..+|+||||+|||||||++++++...... .++++||||+|+.+ |++|.+||+++++.+..++++
T Consensus 249 gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~eL~~l~~~~~~~~~~ 323 (399)
T PRK13289 249 APAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQP----KRPVHFIHAARNGG-VHAFRDEVEALAARHPNLKAH 323 (399)
T ss_pred cCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCC----CCCEEEEEEeCChh-hchHHHHHHHHHHhCCCcEEE
Confidence 6788999987667899999999999999999999875432 26899999999997 999999999999887777899
Q ss_pred EEEecCCCC----ccccc-hhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 604 VAFSREGPT----KEYVQ-HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 604 ~afSr~~~~----k~yVq-~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
.++|++... ..|++ .++. .+.+.+.+ ..+..+||||| ++|+++|.+.|.+.
T Consensus 324 ~~~s~~~~~~~~~~~~~~~g~i~--~~~l~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~ 380 (399)
T PRK13289 324 TWYREPTEQDRAGEDFDSEGLMD--LEWLEAWLPDPDADFYFCGP-VPFMQFVAKQLLEL 380 (399)
T ss_pred EEECCCccccccCCcccccCccc--HHHHHhhCCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 999985421 22222 2221 12333334 24789999999 99999999888653
|
|
| >cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=207.37 Aligned_cols=178 Identities=24% Similarity=0.358 Sum_probs=138.6
Q ss_pred CChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEee
Q 005624 449 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~ 526 (687)
..+|||+.+.+|.. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||.+ +.+|+ .+.|..+.
T Consensus 31 ~~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~v~gP~ 93 (228)
T cd06209 31 FLPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRLL---------PGGAMSSYLRDRAQPGD------RLTLTGPL 93 (228)
T ss_pred cCCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEEc---------CCCcchhhHHhccCCCC------EEEEECCc
Confidence 34688886544544 4799999998863 6788877543 35889999998 66654 35565566
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|.|.++.. .+|++|||+||||||+++++++..... ..++++|+||+|+.+ |.+|.+||+++.+....+++++++
T Consensus 94 G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 167 (228)
T cd06209 94 GSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAEDG----SAHPVHLVYGVTRDA-DLVELDRLEALAERLPGFSFRTVV 167 (228)
T ss_pred ccceecCC-CCeEEEEEcccCHhHHHHHHHHHHhcC----CCCcEEEEEecCCHH-HhccHHHHHHHHHhCCCeEEEEEE
Confidence 88877644 489999999999999999999987643 236899999999987 999999999999887777889999
Q ss_pred ecCCC---CccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~---~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
||+.. .++||++.+.+. .+ ..+..+|+||| ++|+++|++.|.+
T Consensus 168 s~~~~~~~~~g~v~~~~~~~------~~~~~~~~v~icGp-~~m~~~~~~~l~~ 214 (228)
T cd06209 168 ADPDSWHPRKGYVTDHLEAE------DLNDGDVDVYLCGP-PPMVDAVRSWLDE 214 (228)
T ss_pred cCCCccCCCcCCccHHHHHh------hccCCCcEEEEeCC-HHHHHHHHHHHHH
Confidence 98643 456888776543 12 24578999999 8999999998875
|
Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group. |
| >PRK12359 flavodoxin FldB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-22 Score=193.88 Aligned_cols=144 Identities=19% Similarity=0.356 Sum_probs=120.1
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
|++.|+|+|+|||||.+|++|++.+.. ..+++.+++++++ +++..++.+||++||||.|++|+++..|+.
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg~----~~v~v~~i~~~~~------~~l~~yD~iIlG~pTw~~Gel~~d~~~~~~ 70 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIGE----ELVDLHNLKDDPP------KLMEQYDVLILGIPTWDFGEIQEDWEAVWD 70 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhCC----CeEEEEEcccCCh------hHHccCCEEEEEecccCCCcCcHHHHHHHH
Confidence 689999999999999999999998732 2367888888875 357889999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCC-ch-HHHHHHHHHHHHHHHHcCCccccc-----------------------cccc
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNR-QY-EHFNKIAKVVDEILANQGAKRLVP-----------------------VGLG 239 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds-~Y-~~f~~~ak~ld~~L~~lGa~~l~~-----------------------~g~g 239 (687)
.|.+. .|+|+++||||+||+ .| ++||.+++.+.++|++.||+.+.. +.+.
T Consensus 71 ~l~~~-----dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl~lD 145 (172)
T PRK12359 71 QLDDL-----NLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGLALD 145 (172)
T ss_pred HHhhC-----CCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEEEEEEc
Confidence 88754 599999999999998 58 899999999999999999985432 2222
Q ss_pred cCCCC--cHHhHHHHHHHHHHHHHhh
Q 005624 240 DDDQC--IEDDFSAWRELVWPELDNL 263 (687)
Q Consensus 240 D~~~~--~e~~f~~W~~~l~~~L~~~ 263 (687)
++++. +++++++|.++|.+++..+
T Consensus 146 ~~nq~~~t~~ri~~W~~~~~~~~~~~ 171 (172)
T PRK12359 146 EVNQYDLSDERIQQWCEQILLEMAEL 171 (172)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHhh
Confidence 23332 7899999999998877543
|
|
| >TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-22 Score=225.08 Aligned_cols=181 Identities=18% Similarity=0.333 Sum_probs=137.5
Q ss_pred CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEE
Q 005624 462 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 541 (687)
Q Consensus 462 l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiIm 541 (687)
...|+|||+|+|.. .+.++|+|+.+.......+...|.+|+||.++.+|+ .+.|..+.|.|.++. ..+|+||
T Consensus 204 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~lvl 275 (405)
T TIGR01941 204 ETVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGD------KVTISGPFGEFFAKD-TDAEMVF 275 (405)
T ss_pred ccceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcC------EEEEEeccCCCeecC-CCCCEEE
Confidence 34699999999864 478999887653222222355799999999887766 466777788998763 4689999
Q ss_pred EecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC------Cccc
Q 005624 542 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEY 615 (687)
Q Consensus 542 Ia~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~------~k~y 615 (687)
||+|||||||++|+++.+..... ..+++||||+|+++ |.+|.+||+++.+++.++++++++||+++ .++|
T Consensus 276 IAgGtGIaP~lsmi~~~l~~~~~---~~~v~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 351 (405)
T TIGR01941 276 IGGGAGMAPMRSHIFDQLKRLKS---KRKISFWYGARSLR-EMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGF 351 (405)
T ss_pred EecCcCcchHHHHHHHHHhcCCC---CCeEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCccce
Confidence 99999999999999987654221 25799999999997 99999999999988877789999987532 3567
Q ss_pred cchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 616 VQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 616 Vq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
|++.+.+.. +.+.. ..+..+|+||| ++|+++|.+.|.+.
T Consensus 352 v~~~l~~~~--l~~~~~~~~~~vylCGP-~~m~~av~~~L~~~ 391 (405)
T TIGR01941 352 IHNVLYENY--LKDHDAPEDCEFYMCGP-PMMNAAVIKMLEDL 391 (405)
T ss_pred eCHHHHHhh--hcccCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 887765321 11111 24678999999 99999999888653
|
This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump. |
| >PRK06703 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-22 Score=190.16 Aligned_cols=145 Identities=19% Similarity=0.191 Sum_probs=121.7
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|++++|+|+|+||||+.+|+.|++++.+.+ ..+++.++++.+. ..+.+++.+||++||||+|++|++++.|+
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~viigspt~~~g~~p~~~~~f~ 72 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFD--HEVVLQEMDGMDA------EELLAYDGIILGSYTWGDGDLPYEAEDFH 72 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcC--CceEEEehhhCCH------HHHhcCCcEEEEECCCCCCcCcHHHHHHH
Confidence 578999999999999999999999998765 4567888877664 34778999999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCC---CcHHhHHHHHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ---CIEDDFSAWRELVWPEL 260 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~---~~e~~f~~W~~~l~~~L 260 (687)
++|... .+++++++|||+||+.|++||.+++.++++|+++|++.+.+....+... ...+...+|.++|...+
T Consensus 73 ~~l~~~-----~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 147 (151)
T PRK06703 73 EDLENI-----DLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIELAPETDEDVEKCSNFAIAFAEKF 147 (151)
T ss_pred HHHhcC-----CCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEEecCCCchhHHHHHHHHHHHHHHHH
Confidence 999753 4789999999999999999999999999999999999887655544332 23456778888876655
Q ss_pred H
Q 005624 261 D 261 (687)
Q Consensus 261 ~ 261 (687)
.
T Consensus 148 ~ 148 (151)
T PRK06703 148 A 148 (151)
T ss_pred H
Confidence 4
|
|
| >cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=207.55 Aligned_cols=184 Identities=19% Similarity=0.321 Sum_probs=135.1
Q ss_pred ChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEe
Q 005624 450 PLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 450 p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v~ 525 (687)
.+|||+.+.++ ...+|+|||+|.|. .+.+.|+|+.+ ..|.+|+||. ++.+|+ .+.|..+
T Consensus 29 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP 91 (231)
T cd06191 29 RPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRV---------PGGRVSNYLREHIQPGM------TVEVMGP 91 (231)
T ss_pred CCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEEC---------CCCccchHHHhcCCCCC------EEEEeCC
Confidence 46888754333 12469999999886 47788887643 2488999998 576765 4566667
Q ss_pred eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005624 526 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 605 (687)
Q Consensus 526 ~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~a 605 (687)
.|.|.++.+...++||||+||||||+++++++...... ..++.||||+|+++ |++|.+||++++++...++++++
T Consensus 92 ~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 166 (231)
T cd06191 92 QGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAP----ESDFTLIHSARTPA-DMIFAQELRELADKPQRLRLLCI 166 (231)
T ss_pred ccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCC----CCCEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEE
Confidence 78899876666899999999999999999999865432 26899999999986 99999999999987777789999
Q ss_pred EecCCCCccccchhhhcchHHHHhccc--CCcEEEEECCchhhHHHHHHHHHH
Q 005624 606 FSREGPTKEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 606 fSr~~~~k~yVq~~l~e~~~~v~~~i~--~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+||++....+.+++.....+....++. .++.+|+||| ++|++++.+.|.+
T Consensus 167 ~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vyicGp-~~mv~~~~~~l~~ 218 (231)
T cd06191 167 FTRETLDSDLLHGRIDGEQSLGAALIPDRLEREAFICGP-AGMMDAVETALKE 218 (231)
T ss_pred ECCCCCCccccCCcccccHHHHHHhCccccCCeEEEECC-HHHHHHHHHHHHH
Confidence 998754333333222111111111222 3579999999 8999999988854
|
FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in |
| >cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=206.66 Aligned_cols=182 Identities=22% Similarity=0.304 Sum_probs=139.0
Q ss_pred CChHHHHHHHcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEee
Q 005624 449 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~ 526 (687)
..+|||+.+.+|. ...|+|||+|.|.. .+.+.|+|+.+ ..|.+|+||.+ +.+|+ .+.|..+.
T Consensus 35 ~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP~ 98 (236)
T cd06210 35 FVPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRLL---------PGGAFSTYLETRAKVGQ------RLNLRGPL 98 (236)
T ss_pred cCCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEEc---------CCCccchhhhhCcCCCC------EEEEecCc
Confidence 4578988654453 34799999999863 36788877543 35889999997 66655 45666667
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|+|.++.+..+++||||+|||||||+++++++..... ..+++||||+|+.+ |.+|.+||+++.+...++++++++
T Consensus 99 G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 173 (236)
T cd06210 99 GAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGE----PQEARLFFGVNTEA-ELFYLDELKRLADSLPNLTVRICV 173 (236)
T ss_pred ceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcCC----CceEEEEEecCCHH-HhhhHHHHHHHHHhCCCeEEEEEE
Confidence 8898876556799999999999999999999875432 25799999999987 999999999999887777899999
Q ss_pred ecCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
||+.. .++++++.+.+.. . .......+|+||| ++|++++++.|.+
T Consensus 174 s~~~~~~~~~~g~~~~~l~~~l---~-~~~~~~~vyicGp-~~m~~~~~~~l~~ 222 (236)
T cd06210 174 WRPGGEWEGYRGTVVDALREDL---A-SSDAKPDIYLCGP-PGMVDAAFAAARE 222 (236)
T ss_pred cCCCCCcCCccCcHHHHHHHhh---c-ccCCCcEEEEeCC-HHHHHHHHHHHHH
Confidence 98532 3566666554321 1 1123568999999 8999999998875
|
This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water. |
| >cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=207.43 Aligned_cols=185 Identities=19% Similarity=0.274 Sum_probs=139.4
Q ss_pred ChHHHHHHHcCCC----cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEE-E
Q 005624 450 PLGVFFAAIVPRL----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF-V 524 (687)
Q Consensus 450 p~~~~l~~~~p~l----~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~-v 524 (687)
.+|||+.+-+|.. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||+++.+|+ .+.+. .
T Consensus 26 ~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~l~~Gd------~v~v~~g 88 (241)
T cd06195 26 QAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILV---------PDGPLTPRLFKLKPGD------TIYVGKK 88 (241)
T ss_pred CCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEe---------cCCCCchHHhcCCCCC------EEEECcC
Confidence 4688875444432 4599999998853 6788877543 3589999999887765 35565 5
Q ss_pred eeCCcccCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHc-CCCcEE
Q 005624 525 RQSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQL 602 (687)
Q Consensus 525 ~~~~F~lp~~-~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~-g~~~~l 602 (687)
+.|.|.++.. ...|++|||+|||||||++++++..... ..++++||||+|+++ |.+|.+||+++.++ ...+++
T Consensus 89 P~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~----~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~ 163 (241)
T cd06195 89 PTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE----RFDKIVLVHGVRYAE-ELAYQDEIEALAKQYNGKFRY 163 (241)
T ss_pred CCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC----CCCcEEEEEccCCHH-HhhhHHHHHHHHhhcCCCEEE
Confidence 6688988765 4589999999999999999999987532 126899999999997 99999999999887 556688
Q ss_pred EEEEecCCCC---ccccchhhhcc-hHHHHhc--ccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 603 IVAFSREGPT---KEYVQHKMMEK-SSDIWNM--LSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 603 ~~afSr~~~~---k~yVq~~l~e~-~~~v~~~--i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
+.+++|++.. ++|+++.+... ....... ...+..||+||| ++|+++|.+.|.+.
T Consensus 164 ~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~ 223 (241)
T cd06195 164 VPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGN-PQMIDDTQELLKEK 223 (241)
T ss_pred EEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCC-HHHHHHHHHHHHHc
Confidence 8889987543 67888876531 1111111 125679999999 89999999888764
|
Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. |
| >PRK11872 antC anthranilate dioxygenase reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-22 Score=217.13 Aligned_cols=180 Identities=19% Similarity=0.327 Sum_probs=140.7
Q ss_pred CChHHHHHHHcCCCc-ccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEee
Q 005624 449 PPLGVFFAAIVPRLQ-PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~-pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~ 526 (687)
..+|||+.+.+|... .|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.|..+.
T Consensus 137 ~~pGQ~v~l~~~~~~~~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~L~~~l~~G~------~v~i~gP~ 200 (340)
T PRK11872 137 FLPGQYARLQIPGTDDWRSYSFANRPNA-TNQLQFLIRLL---------PDGVMSNYLRERCQVGD------EILFEAPL 200 (340)
T ss_pred cCCCCEEEEEeCCCCceeecccCCCCCC-CCeEEEEEEEC---------CCCcchhhHhhCCCCCC------EEEEEcCc
Confidence 357898865556443 699999999863 47899888643 35889999974 66655 45666677
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|.|.++. ..+|+||||+|||||||+++++++..... .++++||||+|+++ |++|.+||+++.++...++++.+.
T Consensus 201 G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-dl~~~~el~~~~~~~~~~~~~~~~ 274 (340)
T PRK11872 201 GAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAEQGC----SPPVHLYYGVRHAA-DLCELQRLAAYAERLPNFRYHPVV 274 (340)
T ss_pred ceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHHcCC----CCcEEEEEecCChH-HhccHHHHHHHHHHCCCcEEEEEE
Confidence 8998864 35899999999999999999999876431 26899999999997 999999999999888788899998
Q ss_pred ecCCC----CccccchhhhcchHHHHhccc-CCcEEEEECCchhhHHHHHHHHHHH
Q 005624 607 SREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 607 Sr~~~----~k~yVq~~l~e~~~~v~~~i~-~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
++.++ .++||++.+.+. .+. ....+|+||| ++|++++.+.|.+.
T Consensus 275 s~~~~~~~g~~g~v~~~l~~~------~l~~~~~~vy~CGp-~~mv~~~~~~L~~~ 323 (340)
T PRK11872 275 SKASADWQGKRGYIHEHFDKA------QLRDQAFDMYLCGP-PPMVEAVKQWLDEQ 323 (340)
T ss_pred eCCCCcCCCceeeccHHHHHh------hcCcCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 87532 467888776543 122 3467999999 99999999988653
|
|
| >cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-22 Score=203.36 Aligned_cols=180 Identities=22% Similarity=0.319 Sum_probs=139.5
Q ss_pred ChHHHHHHHcCCC--cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEee
Q 005624 450 PLGVFFAAIVPRL--QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 450 p~~~~l~~~~p~l--~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~ 526 (687)
.+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|+.. ..|.+|+||.+ +.+|+ .+.|..+.
T Consensus 25 ~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~ 88 (224)
T cd06187 25 WAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRAV---------PGGRVSNALHDELKVGD------RVRLSGPY 88 (224)
T ss_pred CCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEeC---------CCCcchHHHhhcCccCC------EEEEeCCc
Confidence 4688876554543 3699999998864 36788877532 35899999987 77655 45666677
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|.|.++.+...++||||+|||||||++++++..... ...+++|||++|+.+ |++|.++|+++.+....+++++++
T Consensus 89 G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~----~~~~v~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~ 163 (224)
T cd06187 89 GTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG----EPRPVHLFFGARTER-DLYDLEGLLALAARHPWLRVVPVV 163 (224)
T ss_pred cceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC----CCCCEEEEEecCChh-hhcChHHHHHHHHhCCCeEEEEEe
Confidence 888887655689999999999999999999987643 126899999999997 999999999999887777888888
Q ss_pred ecCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+++.. .++|+++.+.+... + ..+..+|+||| ++|+++|.+.|.+
T Consensus 164 ~~~~~~~~~~~g~~~~~~~~~~~---~--~~~~~v~vcGp-~~~~~~v~~~l~~ 211 (224)
T cd06187 164 SHEEGAWTGRRGLVTDVVGRDGP---D--WADHDIYICGP-PAMVDATVDALLA 211 (224)
T ss_pred CCCCCccCCCcccHHHHHHHhcc---c--cccCEEEEECC-HHHHHHHHHHHHH
Confidence 87542 45788877654321 1 24689999999 9999999988865
|
Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. |
| >cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-22 Score=205.45 Aligned_cols=181 Identities=22% Similarity=0.370 Sum_probs=137.8
Q ss_pred ChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEeeC
Q 005624 450 PLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQS 527 (687)
Q Consensus 450 p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~~ 527 (687)
.+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.+..+.|
T Consensus 31 ~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~G 94 (232)
T cd06212 31 FAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKKY---------PGGLFSSFLDDGLAVGD------PVTVTGPYG 94 (232)
T ss_pred CCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCchhhHHhhcCCCCC------EEEEEcCcc
Confidence 4688876544543 5799999999864 36788887642 35889999986 66654 456666778
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
.|.++.+...|+||||+|||||||++++++...... .++++|+||+|+.. |++|.+||+++.+....+++++++|
T Consensus 95 ~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~s 169 (232)
T cd06212 95 TCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASGS----DRPVRFFYGARTAR-DLFYLEEIAALGEKIPDFTFIPALS 169 (232)
T ss_pred cceecCCCCCcEEEEecCcchhHHHHHHHHHHhcCC----CCcEEEEEeccchH-HhccHHHHHHHHHhCCCEEEEEEEC
Confidence 898876556899999999999999999999876432 26799999999997 9999999999998776777888999
Q ss_pred cCCC------CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 608 REGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 608 r~~~------~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
|+.. ..+|+++.+.+.... + ++..+|+||| ++|+++|.+.|.+.
T Consensus 170 ~~~~~~~~~~~~g~~~~~~~~~~~~----~-~~~~v~~CGp-~~~~~~v~~~l~~~ 219 (232)
T cd06212 170 ESPDDEGWSGETGLVTEVVQRNEAT----L-AGCDVYLCGP-PPMIDAALPVLEMS 219 (232)
T ss_pred CCCCCCCCcCCcccHHHHHHhhccC----c-cCCEEEEECC-HHHHHHHHHHHHHc
Confidence 8542 245666654332111 1 4678999999 89999999888653
|
These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate. |
| >PRK10684 HCP oxidoreductase, NADH-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-22 Score=214.85 Aligned_cols=183 Identities=16% Similarity=0.284 Sum_probs=136.0
Q ss_pred ChHHHHHHHcCC--CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEee
Q 005624 450 PLGVFFAAIVPR--LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 450 p~~~~l~~~~p~--l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v~~ 526 (687)
-+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+.+ ..|.+|+||. ++.+|+ .+.+..+.
T Consensus 38 ~pGQfv~l~~~~~~~~~R~ySias~p~~-~~~l~i~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v~gP~ 101 (332)
T PRK10684 38 RAGQYALVSIRNSAETLRAYTLSSTPGV-SEFITLTVRRI---------DDGVGSQWLTRDVKRGD------YLWLSDAM 101 (332)
T ss_pred CCCCEEEEEecCCCEeeeeecccCCCCC-CCcEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEeCCc
Confidence 468887544442 23599999999863 36788888643 4588999996 566655 35565567
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|.|.++.+..+|+||||+|||||||++|+++...... ..+++||||+|+.+ |++|.+||+++++....+++++..
T Consensus 102 G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~----~~~v~l~y~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 176 (332)
T PRK10684 102 GEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRP----QADVQVIFNVRTPQ-DVIFADEWRQLKQRYPQLNLTLVA 176 (332)
T ss_pred cccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC----CCCEEEEEeCCChH-HhhhHHHHHHHHHHCCCeEEEEEe
Confidence 8899876667899999999999999999998765431 26899999999997 999999999999877665677776
Q ss_pred ecCCCCccccchhhhcchHHHHhccc--CCcEEEEECCchhhHHHHHHHHHHH
Q 005624 607 SREGPTKEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 607 Sr~~~~k~yVq~~l~e~~~~v~~~i~--~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
++++ .++|+++++.+. .+.+.+. .+..+|+||| ++|++++.+.|.+.
T Consensus 177 ~~~~-~~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP-~~m~~~v~~~l~~~ 225 (332)
T PRK10684 177 ENNA-TEGFIAGRLTRE--LLQQAVPDLASRTVMTCGP-APYMDWVEQEVKAL 225 (332)
T ss_pred ccCC-CCCccccccCHH--HHHHhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 6543 345666666432 2222221 3678999999 99999999988664
|
|
| >PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-22 Score=210.24 Aligned_cols=180 Identities=21% Similarity=0.265 Sum_probs=133.7
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCC
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 528 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~ 528 (687)
..+|||+.+.+|....|+|||+|+|.. ++.++|+|+. .|.+|+||.++.+|+ .+.|..+.|.
T Consensus 38 ~~pGQ~v~l~~~~~~~~pySias~p~~-~~~l~l~Ik~-----------~G~~S~~L~~l~~Gd------~v~v~gP~G~ 99 (289)
T PRK08345 38 FKPGQFVQVTIPGVGEVPISICSSPTR-KGFFELCIRR-----------AGRVTTVIHRLKEGD------IVGVRGPYGN 99 (289)
T ss_pred cCCCCEEEEEcCCCCceeeEecCCCCC-CCEEEEEEEe-----------CChHHHHHHhCCCCC------EEEEeCCCCC
Confidence 357898865446555699999999863 4678887752 388999999887765 3556556676
Q ss_pred -cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 529 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 529 -F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
|.++....+|+||||+|||||||++++++++.... ..++++||||+|+.+ |++|++||+++++....++++.++|
T Consensus 100 ~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~---~~~~v~l~~~~r~~~-d~~~~deL~~l~~~~~~~~~~~~~s 175 (289)
T PRK08345 100 GFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRW---KYGNITLIYGAKYYE-DLLFYDELIKDLAEAENVKIIQSVT 175 (289)
T ss_pred CCCcccccCceEEEEecccchhHHHHHHHHHHhcCC---CCCcEEEEEecCCHH-HhhHHHHHHHHHhcCCCEEEEEEec
Confidence 66654445799999999999999999999876431 126899999999996 9999999999988777778899999
Q ss_pred cCCCC---------------ccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 608 REGPT---------------KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 608 r~~~~---------------k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
|+... +++|++.+.+. .. ..+..+|+||| ++|++++.+.|.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP-~~m~~~v~~~L~~~ 234 (289)
T PRK08345 176 RDPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGP-PVMYKFVFKELINR 234 (289)
T ss_pred CCCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECC-HHHHHHHHHHHHHc
Confidence 85432 22333322211 11 24568999999 99999999988654
|
|
| >cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=199.19 Aligned_cols=183 Identities=19% Similarity=0.244 Sum_probs=135.0
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhccc-CCCCCCCCCceeeEEEeeC
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNS-LPMEKSNDCSWAPIFVRQS 527 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~-~~~~~~~~~~~~~v~v~~~ 527 (687)
..+|||+.+.+|....|+|||+|+|... +.++|+|+.+ ..|.+|+||.+. .+|+ .+.|..+.|
T Consensus 24 ~~pGQ~v~l~~~~~~~r~ySi~s~~~~~-~~~~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~gP~G 87 (222)
T cd06194 24 YLPGQYVNLRRAGGLARSYSPTSLPDGD-NELEFHIRRK---------PNGAFSGWLGEEARPGH------ALRLQGPFG 87 (222)
T ss_pred cCCCCEEEEEcCCCCceeeecCCCCCCC-CEEEEEEEec---------cCCccchHHHhccCCCC------EEEEecCcC
Confidence 3568888655566667999999998643 6788777532 348899999984 6654 456666678
Q ss_pred CcccCC-CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 528 NFKLPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 528 ~F~lp~-~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
.|.+.. ....|++|||+|||||||++++++++.... .++++||||+|+.+ |++|.+||+++.+....++++.+.
T Consensus 88 ~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 162 (222)
T cd06194 88 QAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGH----QGEIRLVHGARDPD-DLYLHPALLWLAREHPNFRYIPCV 162 (222)
T ss_pred CeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcCC----CccEEEEEecCChh-hccCHHHHHHHHHHCCCeEEEEEE
Confidence 876643 456799999999999999999999875432 26899999999997 999999999999877667888888
Q ss_pred ecCCCCc-cccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 607 SREGPTK-EYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 607 Sr~~~~k-~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
+++.... .+..+.+.+. +. .+..+..+|+||| ++|++++++.|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~---~~-~~~~~~~vyicGp-~~m~~~~~~~L~~~ 209 (222)
T cd06194 163 SEGSQGDPRVRAGRIAAH---LP-PLTRDDVVYLCGA-PSMVNAVRRRAFLA 209 (222)
T ss_pred ccCCCCCcccccchhhhh---hc-cccCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 8864332 1111112111 11 1245789999999 99999999998753
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e |
| >cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-21 Score=195.52 Aligned_cols=165 Identities=24% Similarity=0.402 Sum_probs=126.3
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEEE
Q 005624 464 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 542 (687)
Q Consensus 464 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiImI 542 (687)
+|+|||+|.|....+.+.|+|+.+ ..|.+|.||.+ +.+|+ .+.|..+.|.|.++.+..+++|||
T Consensus 64 ~r~ysi~s~~~~~~~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP~G~f~l~~~~~~~~v~i 128 (243)
T cd06216 64 WRSYSLSSSPTQEDGTITLTVKAQ---------PDGLVSNWLVNHLAPGD------VVELSQPQGDFVLPDPLPPRLLLI 128 (243)
T ss_pred EEEEeccCCCcCCCCeEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEECCceeeecCCCCCCCEEEE
Confidence 599999998851246788887643 34888999986 66655 355666678899987656899999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhc
Q 005624 543 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 622 (687)
Q Consensus 543 a~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~e 622 (687)
|+||||||+++++++..... ..++++||||+|+.+ |.+|.+||+++.+++..+++++.+|++ ..++++...+
T Consensus 129 agG~Giap~~s~l~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~s~~-~~~g~~~~~~-- 200 (243)
T cd06216 129 AAGSGITPVMSMLRTLLARG----PTADVVLLYYARTRE-DVIFADELRALAAQHPNLRLHLLYTRE-ELDGRLSAAH-- 200 (243)
T ss_pred ecCccHhHHHHHHHHHHhcC----CCCCEEEEEEcCChh-hhHHHHHHHHHHHhCCCeEEEEEEcCC-ccCCCCCHHH--
Confidence 99999999999999986543 236899999999997 999999999998777767888888876 2344443322
Q ss_pred chHHHHhcc--cCCcEEEEECCchhhHHHHHHHHHH
Q 005624 623 KSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 623 ~~~~v~~~i--~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+.+.+ ..++.+|+||| ++|++++.+.|.+
T Consensus 201 ----l~~~~~~~~~~~vyvcGp-~~m~~~~~~~l~~ 231 (243)
T cd06216 201 ----LDAVVPDLADRQVYACGP-PGFLDAAEELLEA 231 (243)
T ss_pred ----HHHhccCcccCeEEEECC-HHHHHHHHHHHHH
Confidence 22222 14579999999 8999999998865
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for |
| >KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.1e-22 Score=206.40 Aligned_cols=143 Identities=31% Similarity=0.567 Sum_probs=123.2
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
.+-.|||+||||||+++|+.+++++++.. ..++++|++ |.++| ++ +++++|+++|+-+|+|| +..|+.
T Consensus 47 ~~~~vfy~s~~GtA~~~A~~~~e~~~sld--~~~~llnl~-y~~~d------~p-en~~~~lv~~~~~~~~~--~d~~~~ 114 (601)
T KOG1160|consen 47 IKSKVFYSSLTGTAKKAAKSVHEKLKSLD--ELPKLLNLD-YSDFD------VP-ENALYFLVLPSYDIDPP--LDYFLQ 114 (601)
T ss_pred ccceEEEEeccchHHHHHHHHHHHHHhcc--cchhhcCCC-CCccC------CC-cceEEEEEecccCCCCc--HHHHHH
Confidence 34489999999999999999999998764 336788998 77543 55 77888888888899999 889999
Q ss_pred HHHhhcC----CCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHH
Q 005624 185 WFTEQKE----GGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPE 259 (687)
Q Consensus 185 ~L~~~~~----~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~ 259 (687)
||++... ++..|++++||||||||+.| ++||..|+++|+|+..|||+|++|+|++|.+. ..+++|+..+.+.
T Consensus 115 ~L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~~LG~~r~~p~G~~~~~~---~~id~W~~~~~~~ 191 (601)
T KOG1160|consen 115 WLEESANDFRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWISRLGGRRIFPLGEVDMDS---AKIDEWTSLVAET 191 (601)
T ss_pred HHHhhhhccccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHHhhcCceeeecCcccccc---ccHHHHHHHHHHH
Confidence 9998543 45689999999999999997 99999999999999999999999999999873 4466999999888
Q ss_pred HHh
Q 005624 260 LDN 262 (687)
Q Consensus 260 L~~ 262 (687)
|+.
T Consensus 192 Lk~ 194 (601)
T KOG1160|consen 192 LKD 194 (601)
T ss_pred HcC
Confidence 775
|
|
| >PRK05713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=209.99 Aligned_cols=175 Identities=17% Similarity=0.209 Sum_probs=129.9
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeC-
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS- 527 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~- 527 (687)
..+|||+.+.++....|+|||||.|.. .+.++|+|+.+ ..|.+|+||.++.+|+. +.+..+.+
T Consensus 119 ~~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~~---------~~G~~s~~l~~l~~Gd~------v~l~~p~gg 182 (312)
T PRK05713 119 YRAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDCS---------RPGAFCDAARQLQVGDL------LRLGELRGG 182 (312)
T ss_pred cCCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEEc---------CCCccchhhhcCCCCCE------EEEccCCCC
Confidence 357899865445556799999999863 46788887543 35889999988877663 44444444
Q ss_pred CcccCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 528 NFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 528 ~F~lp~~-~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
.|.++.+ ..+|+||||+|||||||+|++++....+. .++++|+||+|+.+ |++|.+||++++++...++++.+.
T Consensus 183 ~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~ 257 (312)
T PRK05713 183 ALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGH----QGPIRLLHLARDSA-GHYLAEPLAALAGRHPQLSVELVT 257 (312)
T ss_pred ceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcCC----CCcEEEEEEcCchH-HhhhHHHHHHHHHHCCCcEEEEEE
Confidence 5666644 46899999999999999999999876432 26899999999997 999999999999877666777766
Q ss_pred ecCCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
++ ++++.+.+. . ....+..+|+||| ++|++++.+.|.+
T Consensus 258 ~~------~~~~~l~~~----~-~~~~~~~vyiCGp-~~mv~~~~~~L~~ 295 (312)
T PRK05713 258 AA------QLPAALAEL----R-LVSRQTMALLCGS-PASVERFARRLYL 295 (312)
T ss_pred Cc------chhhhhhhc----c-CCCCCeEEEEeCC-HHHHHHHHHHHHH
Confidence 54 233333211 0 1224578999999 9999999998864
|
|
| >cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=201.13 Aligned_cols=178 Identities=20% Similarity=0.314 Sum_probs=134.0
Q ss_pred ChHHHHHHHcC--C---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEE
Q 005624 450 PLGVFFAAIVP--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIF 523 (687)
Q Consensus 450 p~~~~l~~~~p--~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~ 523 (687)
.+|||+.+.+| . ...|+|||+|.|.. +.+.|+|+.+ ..|.+|+||.+ +.+|+ .+.|.
T Consensus 38 ~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~i~ 100 (247)
T cd06184 38 LPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKRE---------PGGLVSNYLHDNVKVGD------VLEVS 100 (247)
T ss_pred CCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEE
Confidence 46777754443 2 35799999999853 4677766532 24899999998 77765 35566
Q ss_pred EeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEE
Q 005624 524 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 603 (687)
Q Consensus 524 v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~ 603 (687)
.+.|.|.++.+..+++||||+|||||||+++++++..... .++++||||+|+++ |.+|.+||+++.+.+..++++
T Consensus 101 gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~----~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~ 175 (247)
T cd06184 101 APAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGP----GRPVTFIHAARNSA-VHAFRDELEELAARLPNLKLH 175 (247)
T ss_pred cCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCC----CCcEEEEEEcCchh-hHHHHHHHHHHHhhCCCeEEE
Confidence 6678899876556899999999999999999999876421 26899999999997 899999999999876777899
Q ss_pred EEEecCCCC--------ccccchhhhcchHHHHhc-ccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 604 VAFSREGPT--------KEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 604 ~afSr~~~~--------k~yVq~~l~e~~~~v~~~-i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+++||.... .++++. +.+.+. ...+..+|+||| +.|++++.+.|.+
T Consensus 176 ~~~s~~~~~~~~~~~~~~g~~~~------~~l~~~~~~~~~~v~icGp-~~m~~~v~~~l~~ 230 (247)
T cd06184 176 VFYSEPEAGDREEDYDHAGRIDL------ALLRELLLPADADFYLCGP-VPFMQAVREGLKA 230 (247)
T ss_pred EEECCCCcccccccccccCccCH------HHHhhccCCCCCEEEEECC-HHHHHHHHHHHHH
Confidence 999986432 233332 122222 246789999999 8999999988865
|
Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling. |
| >cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-21 Score=198.61 Aligned_cols=177 Identities=24% Similarity=0.363 Sum_probs=133.7
Q ss_pred ChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEeeC
Q 005624 450 PLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQS 527 (687)
Q Consensus 450 p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~~ 527 (687)
.+|||+.+.+|.. ..|+|||+|+|.. .+.+.|+|+.+ ..|.+|+||.+ +.+|+ .+.|..+.|
T Consensus 29 ~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~G 92 (227)
T cd06213 29 KAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRKV---------PGGAFSGWLFGADRTGE------RLTVRGPFG 92 (227)
T ss_pred CCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCcchHHHHhcCCCCC------EEEEeCCCc
Confidence 3688875544543 4799999999863 46788877533 34889999965 55654 456666678
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHc-CCCcEEEEEE
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQLIVAF 606 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~-g~~~~l~~af 606 (687)
.|.++. ..+++||||+|||||||+++++++.... ...+++||||+|+++ |.+|.+||+++++. ...++++.++
T Consensus 93 ~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~~ 166 (227)
T cd06213 93 DFWLRP-GDAPILCIAGGSGLAPILAILEQARAAG----TKRDVTLLFGARTQR-DLYALDEIAAIAARWRGRFRFIPVL 166 (227)
T ss_pred ceEeCC-CCCcEEEEecccchhHHHHHHHHHHhcC----CCCcEEEEEeeCCHH-HhccHHHHHHHHHhccCCeEEEEEe
Confidence 898864 3578999999999999999999986543 125799999999997 99999999999865 3556788888
Q ss_pred ecCCC------CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~------~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
|++.. .++||++.+.+. +..+..+|+||| ++|++++.+.|.+
T Consensus 167 s~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp-~~~~~~~~~~l~~ 214 (227)
T cd06213 167 SEEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGP-PAMIDAAIAVLRA 214 (227)
T ss_pred cCCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECC-HHHHHHHHHHHHH
Confidence 87532 235676655432 135689999999 8999999888865
|
Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. |
| >cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-21 Score=201.69 Aligned_cols=180 Identities=21% Similarity=0.324 Sum_probs=136.3
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCC
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 528 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~ 528 (687)
..+|||+.+.+|....|+|||+|+|.. .+.++|+|+. .|..|+||.++.+|+ .+.+..+.|.
T Consensus 28 ~~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik~-----------~G~~S~~L~~l~~G~------~v~i~gP~G~ 89 (253)
T cd06221 28 FKPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIRR-----------VGRVTEALHELKPGD------TVGLRGPFGN 89 (253)
T ss_pred cCCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEEe-----------CChhhHHHHcCCCCC------EEEEECCcCC
Confidence 457888865556555699999999863 4678887752 378899999876655 3556666666
Q ss_pred -cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 529 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 529 -F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
|.++....+|+||||+||||||++++++++++... ..++++|||+.|+.+ |++|++||+++.+. ..+++.+++|
T Consensus 90 ~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~---~~~~i~Li~~~r~~~-~~~~~~~L~~l~~~-~~~~~~~~~s 164 (253)
T cd06221 90 GFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRE---DYGKVTLLYGARTPE-DLLFKEELKEWAKR-SDVEVILTVD 164 (253)
T ss_pred CcccccccCCeEEEEccccchhHHHHHHHHHHhccc---cCCcEEEEEecCChH-HcchHHHHHHHHhc-CCeEEEEEeC
Confidence 66654356899999999999999999999886431 126899999999997 99999999999987 5567888888
Q ss_pred cCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 608 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 608 r~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
|+.+ ..+|+++.+.+... ...+..||+||| +.|++++.+.|.+.
T Consensus 165 ~~~~~~~~~~g~v~~~l~~~~~-----~~~~~~vyicGp-~~mv~~~~~~L~~~ 212 (253)
T cd06221 165 RAEEGWTGNVGLVTDLLPELTL-----DPDNTVAIVCGP-PIMMRFVAKELLKL 212 (253)
T ss_pred CCCCCccCCccccchhHHhcCC-----CcCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 7542 34677765544310 025679999999 99999999888754
|
Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. |
| >cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-21 Score=197.28 Aligned_cols=183 Identities=19% Similarity=0.299 Sum_probs=132.4
Q ss_pred ChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEe
Q 005624 450 PLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 450 p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v~ 525 (687)
.+|||+.+.+| ....|+|||+|.|.. .+.++|+|+.. ..|.+|.||. ++.+|+ .+.|..+
T Consensus 29 ~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~~~~G~------~v~i~gP 92 (231)
T cd06215 29 KPGQFLTLELEIDGETVYRAYTLSSSPSR-PDSLSITVKRV---------PGGLVSNWLHDNLKVGD------ELWASGP 92 (231)
T ss_pred CCCCeEEEEEecCCCeEEEeeecccCCCC-CCcEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEEcC
Confidence 46788754444 223699999999863 35688877643 3488999997 566655 3566666
Q ss_pred eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005624 526 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 605 (687)
Q Consensus 526 ~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~a 605 (687)
.|.|.++.....++||||+|||||||++++++...... ..+++||||+|+++ |++|.++|+++.++...++++++
T Consensus 93 ~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 167 (231)
T cd06215 93 AGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRP----DADIVFIHSARSPA-DIIFADELEELARRHPNFRLHLI 167 (231)
T ss_pred cceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC----CCcEEEEEecCChh-hhhHHHHHHHHHHHCCCeEEEEE
Confidence 78898875556899999999999999999999875432 25799999999997 99999999999987666678888
Q ss_pred EecCCCC-ccccchhhhcchHHHHhccc--CCcEEEEECCchhhHHHHHHHHHH
Q 005624 606 FSREGPT-KEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 606 fSr~~~~-k~yVq~~l~e~~~~v~~~i~--~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
.+++... ..+.+.++.+ +.+.+.+. .+..+|+||| ++|++++.+.|.+
T Consensus 168 ~~~~~~~~~~~~~g~~~~--~~l~~~~~~~~~~~v~icGp-~~m~~~~~~~l~~ 218 (231)
T cd06215 168 LEQPAPGAWGGYRGRLNA--ELLALLVPDLKERTVFVCGP-AGFMKAVKSLLAE 218 (231)
T ss_pred EccCCCCcccccCCcCCH--HHHHHhcCCccCCeEEEECC-HHHHHHHHHHHHH
Confidence 8875431 2222233321 11222221 3468999999 9999999888864
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr |
| >cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-21 Score=194.51 Aligned_cols=176 Identities=19% Similarity=0.282 Sum_probs=128.6
Q ss_pred CChHHHHHHHcCC----CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEE
Q 005624 449 PPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 524 (687)
Q Consensus 449 ~p~~~~l~~~~p~----l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v 524 (687)
..+|||+.+.++. ...|+|||+|+|. .+.++|+|+.+ + ..|..|.||.++.+|+ .+.+..
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~--~~~l~~~vk~~----~----~~g~~s~~l~~l~~G~------~v~i~g 91 (218)
T cd06196 28 FTPGQATEVAIDKPGWRDEKRPFTFTSLPE--DDVLEFVIKSY----P----DHDGVTEQLGRLQPGD------TLLIED 91 (218)
T ss_pred CCCCCEEEEEeeCCCCCccccccccccCCC--CCeEEEEEEEc----C----CCCcHhHHHHhCCCCC------EEEEEC
Confidence 4578887544442 3579999999985 36788887643 1 1256799999988766 355666
Q ss_pred eeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005624 525 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 604 (687)
Q Consensus 525 ~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~ 604 (687)
+.|+|.++ .|+||||+|||||||+++++++..... ..+++|+||+|+.+ |++|.+||+++.. .+++.
T Consensus 92 P~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~----~~~~~ 158 (218)
T cd06196 92 PWGAIEYK----GPGVFIAGGAGITPFIAILRDLAAKGK----LEGNTLIFANKTEK-DIILKDELEKMLG----LKFIN 158 (218)
T ss_pred CccceEec----CceEEEecCCCcChHHHHHHHHHhCCC----CceEEEEEecCCHH-HHhhHHHHHHhhc----ceEEE
Confidence 67888753 579999999999999999999876321 25789999999986 9999999999852 35777
Q ss_pred EEecCCCCccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 605 AFSREGPTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 605 afSr~~~~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
++||++. ..|.+.++.+ +.+.+++ ..++.+|+||| ++|++++.+.|.+.
T Consensus 159 ~~s~~~~-~~~~~g~~~~--~~l~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~ 208 (218)
T cd06196 159 VVTDEKD-PGYAHGRIDK--AFLKQHVTDFNQHFYVCGP-PPMEEAINGALKEL 208 (218)
T ss_pred EEcCCCC-CCeeeeEECH--HHHHHhcCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 8888653 3455555532 2233333 33579999999 89999999888653
|
The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. |
| >cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.6e-21 Score=195.46 Aligned_cols=186 Identities=23% Similarity=0.361 Sum_probs=133.9
Q ss_pred CChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEE
Q 005624 449 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFV 524 (687)
Q Consensus 449 ~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v 524 (687)
..+|||+.+.+|. ..+|+|||+|.|.. +.++|.|+.+ ..|.+|+||. ++.+|+ .+.|..
T Consensus 33 ~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~g 95 (241)
T cd06214 33 YRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRV---------PGGRFSNWANDELKAGD------TLEVMP 95 (241)
T ss_pred cCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEc---------CCCccchhHHhccCCCC------EEEEeC
Confidence 4578998655442 35799999998763 3688777543 3588999997 566655 356666
Q ss_pred eeCCcccCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEE
Q 005624 525 RQSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQL 602 (687)
Q Consensus 525 ~~~~F~lp~~-~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l 602 (687)
+.|.|.++.+ ...++||||+|||||||+++++++..... .++++||||+|+.. |++|.+||+++.+... .+++
T Consensus 96 P~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~ 170 (241)
T cd06214 96 PAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREP----ASRVTLVYGNRTEA-SVIFREELADLKARYPDRLTV 170 (241)
T ss_pred CccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCC----CCcEEEEEEeCCHH-HhhHHHHHHHHHHhCcCceEE
Confidence 6788888765 46899999999999999999999875431 26899999999997 9999999999987653 5567
Q ss_pred EEEEecCCCCccccchhhhcc-hHHHH-hcc--cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 603 IVAFSREGPTKEYVQHKMMEK-SSDIW-NML--SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 603 ~~afSr~~~~k~yVq~~l~e~-~~~v~-~~i--~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
..++++++....+.+.++.+. ..... +++ ..+..||+||| +.|+++|.+.|.+.
T Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp-~~mv~~v~~~l~~~ 228 (241)
T cd06214 171 IHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGP-EPMMDAVEAALLEL 228 (241)
T ss_pred EEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECC-HHHHHHHHHHHHHc
Confidence 788887654322222333211 11111 111 34679999999 89999999888653
|
PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and |
| >TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.7e-21 Score=206.21 Aligned_cols=186 Identities=19% Similarity=0.336 Sum_probs=133.5
Q ss_pred CChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEE
Q 005624 449 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFV 524 (687)
Q Consensus 449 ~p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v 524 (687)
..+|||+.+.+| ....|+|||+|.|. .+.+.|+|+.+ ..|.+|+||. ++.+|+ .+.|..
T Consensus 33 ~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~---------~~G~~S~~l~~~l~~Gd------~v~v~g 95 (352)
T TIGR02160 33 FAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKI---------PGGLFSTWANDEIRPGD------TLEVMA 95 (352)
T ss_pred CCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEe---------CCCcchHHHHhcCCCCC------EEEEeC
Confidence 357888865443 12359999999984 46788888644 2488999997 566655 355655
Q ss_pred eeCCcccCCCC--CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcE
Q 005624 525 RQSNFKLPADA--KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQ 601 (687)
Q Consensus 525 ~~~~F~lp~~~--~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~ 601 (687)
+.|+|.++.+. .+++||||+|||||||++++++.+.... .++++||||+|+++ |.+|.+||+++++... .++
T Consensus 96 P~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~ 170 (352)
T TIGR02160 96 PQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEP----RSTFTLVYGNRRTA-SVMFAEELADLKDKHPQRFH 170 (352)
T ss_pred CceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcCC----CceEEEEEEeCCHH-HHHHHHHHHHHHHhCcCcEE
Confidence 67889886542 3789999999999999999999876431 26899999999997 9999999999987654 467
Q ss_pred EEEEEecCCCCccccchhhhc-chHH-HHhcc--cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 602 LIVAFSREGPTKEYVQHKMME-KSSD-IWNML--SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 602 l~~afSr~~~~k~yVq~~l~e-~~~~-v~~~i--~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
++.++||+.....+.+.++.. .... +.++. .....+|+||| ++|++++++.|.+.
T Consensus 171 ~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~ 229 (352)
T TIGR02160 171 LAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGP-QAMVDDAEQALTGL 229 (352)
T ss_pred EEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 888999865332222333311 1111 11121 23468999999 99999999998764
|
Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. |
| >cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.7e-21 Score=194.17 Aligned_cols=182 Identities=20% Similarity=0.326 Sum_probs=132.9
Q ss_pred ChHHHHHHHcC--CC--cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEE
Q 005624 450 PLGVFFAAIVP--RL--QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 524 (687)
Q Consensus 450 p~~~~l~~~~p--~l--~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v 524 (687)
.+|||+.+.+| .- ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.|..
T Consensus 32 ~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~~---------~~G~~s~~l~~~l~~Gd------~v~i~g 95 (235)
T cd06217 32 LAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKRV---------PGGEVSPYLHDEVKVGD------LLEVRG 95 (235)
T ss_pred CCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEeC
Confidence 35888765444 11 2499999999864 36788887643 24889999986 55654 356666
Q ss_pred eeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005624 525 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 604 (687)
Q Consensus 525 ~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~ 604 (687)
+.|.|.++....++++|||+||||||+++++++...... ..+++|+||+|+.+ |.+|.+||.++.++...++++.
T Consensus 96 P~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~----~~~i~l~~~~r~~~-~~~~~~el~~~~~~~~~~~~~~ 170 (235)
T cd06217 96 PIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGW----PVPFRLLYSARTAE-DVIFRDELEQLARRHPNLHVTE 170 (235)
T ss_pred CceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCC----CceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEE
Confidence 678888765446889999999999999999999876432 26799999999997 8999999999998766668888
Q ss_pred EEecCC-C----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 605 AFSREG-P----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 605 afSr~~-~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
+++|+. + .++++.+.+.+. +... ..+..+||||| ++|+++|.+.|.+.
T Consensus 171 ~~s~~~~~~~~~~~g~~~~~~l~~---~~~~-~~~~~v~icGp-~~m~~~v~~~l~~~ 223 (235)
T cd06217 171 ALTRAAPADWLGPAGRITADLIAE---LVPP-LAGRRVYVCGP-PAFVEAATRLLLEL 223 (235)
T ss_pred EeCCCCCCCcCCcCcEeCHHHHHh---hCCC-ccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 899862 1 223443322111 1111 25689999999 99999999988754
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form |
| >PRK09271 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-20 Score=179.85 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=111.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
|+|+|+|+|+|||||++|+.|++.+...+ ..+++.++++.+..+. ..++.+++++||++||||+|.+|+++..|++
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g--~~v~~~~~~~~~~~~~--~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~ 76 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAG--HEVDWVETDVQTLAEY--PLDPEDYDLYLLGTWTDNAGRTPPEMKRFIA 76 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCC--CeeEEEeccccccccc--ccCcccCCEEEEECcccCCCcCCHHHHHHHH
Confidence 68999999999999999999999998876 3456677665543221 1245678999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCch--HHHHHHHHHHHHHHHHcCCccccccccccCCC---CcHHhHHHHHHHHHHH
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ---CIEDDFSAWRELVWPE 259 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~---~~e~~f~~W~~~l~~~ 259 (687)
+|... ..++++++|||+||+.| ++||.+++.++++|.... +....+... ...+.+..|..++++.
T Consensus 77 ~l~~~-----~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~~-----~~l~~~~~p~~~~d~~~~~~~~~~~~~~ 146 (160)
T PRK09271 77 ELAET-----IGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSSY-----PRLKIEQMPHGERDAAAIDNWTDKVLAL 146 (160)
T ss_pred HHHHH-----hccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhccC-----CceeeecCCccchhHHHHHHHHHHHHHH
Confidence 99864 24678999999999999 899999999999997542 322222211 2247889999998887
Q ss_pred H
Q 005624 260 L 260 (687)
Q Consensus 260 L 260 (687)
|
T Consensus 147 ~ 147 (160)
T PRK09271 147 C 147 (160)
T ss_pred h
Confidence 7
|
|
| >cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=194.89 Aligned_cols=170 Identities=21% Similarity=0.307 Sum_probs=126.6
Q ss_pred ChHHHHHHHcCC----CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005624 450 PLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 450 p~~~~l~~~~p~----l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~ 525 (687)
.+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+.. |.+|+||.++.+|+ .+.|..+
T Consensus 26 ~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~-----------G~~s~~l~~l~~Gd------~v~i~gP 87 (246)
T cd06218 26 KPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVV-----------GKGTRLLSELKAGD------ELDVLGP 87 (246)
T ss_pred CCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEE-----------CcchHHHhcCCCCC------EEEEEec
Confidence 467887654443 35799999998853 36788876532 77899999887765 4566666
Q ss_pred eCC-cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005624 526 QSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 604 (687)
Q Consensus 526 ~~~-F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~ 604 (687)
.|. |.++. ...|+||||+|||||||++++++..... ++++|||++|+.+ |.+|.+||+++.. ++.+
T Consensus 88 ~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~eL~~l~~-----~~~~ 154 (246)
T cd06218 88 LGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAERG------IKVTVLLGFRSAD-DLFLVEEFEALGA-----EVYV 154 (246)
T ss_pred CCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHhcC------CceEEEEEccchh-hhhhHHHHHhhCC-----cEEE
Confidence 664 77764 4689999999999999999999886521 5899999999997 9999999998852 2332
Q ss_pred EEecCC--CCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 605 AFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 605 afSr~~--~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
++++. ..++||++.+.+.... ..+..||+||| ++|++++++.|.+.
T Consensus 155 -~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyiCGp-~~mv~~~~~~L~~~ 202 (246)
T cd06218 155 -ATDDGSAGTKGFVTDLLKELLAE-----ARPDVVYACGP-EPMLKAVAELAAER 202 (246)
T ss_pred -EcCCCCCCcceehHHHHHHHhhc-----cCCCEEEEECC-HHHHHHHHHHHHhc
Confidence 23332 2457888876654321 14689999999 89999999998764
|
Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster. |
| >PRK08221 anaerobic sulfite reductase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=196.76 Aligned_cols=176 Identities=19% Similarity=0.251 Sum_probs=128.4
Q ss_pred ChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCC-
Q 005624 450 PLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN- 528 (687)
Q Consensus 450 p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~- 528 (687)
-+|||+.+-+|...+|+|||++.+ .+.++|+|+. .|.+|+||.++.+|+. +.|..+.|+
T Consensus 34 ~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~-----------~G~~S~~L~~l~~Gd~------v~v~gP~G~~ 93 (263)
T PRK08221 34 KPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRR-----------VGKVTDEIFNLKEGDK------LFLRGPYGNG 93 (263)
T ss_pred CCCceEEEEeCCCCcceeeccCCC---CCEEEEEEEe-----------CCchhhHHHhCCCCCE------EEEECCCCCC
Confidence 468998655566567999999875 3678887742 2889999998877663 445555565
Q ss_pred cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEec
Q 005624 529 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 608 (687)
Q Consensus 529 F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr 608 (687)
|.++....+|+||||+|||||||++++++...... ..++++||||+|+.+ |.+|.+||++|.+.. .+++++++
T Consensus 94 f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~---~~~~v~L~~g~r~~~-~l~~~~el~~~~~~~---~~~~~~~~ 166 (263)
T PRK08221 94 FPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQ---EIKSLDLILGFKNPD-DILFKEDLKRWREKI---NLILTLDE 166 (263)
T ss_pred cccCccCCccEEEEcccccHHHHHHHHHHHHhCcc---cCceEEEEEecCCHH-HhhHHHHHHHHhhcC---cEEEEecC
Confidence 77766556899999999999999999999865321 225899999999997 999999999998743 35566665
Q ss_pred CCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 609 EGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 609 ~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
... ..+++++.+.+.. ... ..+..+|+||| ++|++++.+.|.+.
T Consensus 167 ~~~~~~~~~G~v~~~l~~~~---~~~-~~~~~vylCGp-~~mv~~~~~~L~~~ 214 (263)
T PRK08221 167 GEEGYRGNVGLVTKYIPELT---LKD-IDNMQVIVVGP-PIMMKFTVLEFLKR 214 (263)
T ss_pred CCCCCccCccccChhhHhcc---CCC-cCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 432 2456654443310 000 14678999999 99999999988653
|
|
| >PTZ00274 cytochrome b5 reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-20 Score=200.86 Aligned_cols=182 Identities=13% Similarity=0.205 Sum_probs=126.4
Q ss_pred CChHHHHHHHcC-C-----CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeE
Q 005624 449 PPLGVFFAAIVP-R-----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 522 (687)
Q Consensus 449 ~p~~~~l~~~~p-~-----l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v 522 (687)
..+|||+....+ . ...|+|||+|.|.. .+.++|+|+.+ ..|..|+||+++.+|+. |
T Consensus 82 f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~~---------~~G~~S~~L~~lk~Gd~--------v 143 (325)
T PTZ00274 82 LKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKRK---------KDGLMTNHLFGMHVGDK--------L 143 (325)
T ss_pred CCCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEEc---------CCCcccHHHhcCCCCCE--------E
Confidence 346777753222 1 23699999999864 46899888743 45899999998877663 4
Q ss_pred EEeeCCccc--CCCCCCCeEEEecCCcchhHHHHHHHHHHhhhc--CCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC
Q 005624 523 FVRQSNFKL--PADAKVPIIMIGPGTGLAPFRGFLQERFALQEA--GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 598 (687)
Q Consensus 523 ~v~~~~F~l--p~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~--~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~ 598 (687)
.+++..|.+ +.+..+|+||||+|||||||++++++.+..... .....+++|+||+|+.+ |.+|++||+++++...
T Consensus 144 ~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~-di~~~~eL~~La~~~~ 222 (325)
T PTZ00274 144 LFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTER-HILLKGLFDDLARRYS 222 (325)
T ss_pred EEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHH-HhhHHHHHHHHHHhCC
Confidence 455444443 334447999999999999999999998765321 11224899999999997 9999999999998654
Q ss_pred -CcEEEEEEecCCC------CccccchhhhcchHHHHhccc-CCcEEEEECCchhhHHHHHHH
Q 005624 599 -LSQLIVAFSREGP------TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRT 653 (687)
Q Consensus 599 -~~~l~~afSr~~~------~k~yVq~~l~e~~~~v~~~i~-~~~~iYvCG~a~~M~~~V~~~ 653 (687)
.++++.+.|++.. ..++|.+.+... +..... ....+|+||| ++|++.|...
T Consensus 223 ~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~---~~~~~~~~~~~vylCGP-p~Mm~av~~~ 281 (325)
T PTZ00274 223 NRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRR---TMPAPEEKKKIIMLCGP-DQLLNHVAGT 281 (325)
T ss_pred CcEEEEEEeCCCCcccCCCCCCCccCHHHHHH---hcCCCccCCcEEEEeCC-HHHHHHhcCC
Confidence 5678888887421 235555443211 111011 2257999999 9999999654
|
|
| >cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-20 Score=189.61 Aligned_cols=175 Identities=21% Similarity=0.282 Sum_probs=128.5
Q ss_pred ChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEe
Q 005624 450 PLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 450 p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v~ 525 (687)
.+|||+.+.+|. ...|+|||+|.|.. .+.+.|+|+. .|.+|+||. ++.+|+ .+.|..+
T Consensus 24 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~-----------~G~~t~~l~~~l~~G~------~v~i~gP 85 (216)
T cd06198 24 RAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKA-----------LGDYTRRLAERLKPGT------RVTVEGP 85 (216)
T ss_pred CCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEe-----------CChHHHHHHHhCCCCC------EEEEECC
Confidence 478887655453 46799999998863 3688887752 277899998 676654 3556666
Q ss_pred eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005624 526 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 605 (687)
Q Consensus 526 ~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~a 605 (687)
.|.|.++.. .++++|||+||||||+++++++...... .++++|+||+|+.+ |.+|.+||+++.+++ .+++++.
T Consensus 86 ~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~-~~~~~~~ 158 (216)
T cd06198 86 YGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARGD----ARPVTLFYCVRDPE-DAVFLDELRALAAAA-GVVLHVI 158 (216)
T ss_pred CCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcCC----CceEEEEEEECCHH-HhhhHHHHHHHHHhc-CeEEEEE
Confidence 788988765 6899999999999999999999876432 26899999999997 999999999998877 5567776
Q ss_pred EecCCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 606 FSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 606 fSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
.++.+. .......+. ... ....+..+|+||| ++|++++++.|.+
T Consensus 159 ~~~~~~-~~~~~~~~~----~~~-~~~~~~~vyicGp-~~m~~~v~~~l~~ 202 (216)
T cd06198 159 DSPSDG-RLTLEQLVR----ALV-PDLADADVWFCGP-PGMADALEKGLRA 202 (216)
T ss_pred eCCCCc-ccchhhhhh----hcC-CCcCCCeEEEECc-HHHHHHHHHHHHH
Confidence 665332 111111110 000 0124679999999 8999999998875
|
The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. |
| >cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-20 Score=189.05 Aligned_cols=184 Identities=20% Similarity=0.280 Sum_probs=134.4
Q ss_pred CChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005624 449 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 449 ~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~ 525 (687)
..+|||+.+.+|. ...|+|||+|.+.. .+.+.|+|+.+ ..|.+|.||.++.+|+ .+.|..+
T Consensus 29 ~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~---------~~G~~s~~l~~~~~G~------~v~i~gP 92 (234)
T cd06183 29 LPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIY---------PGGKMSQYLHSLKPGD------TVEIRGP 92 (234)
T ss_pred CCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEEC---------CCCcchhHHhcCCCCC------EEEEECC
Confidence 4578888655453 45799999998863 35788777532 2588999999877765 3556556
Q ss_pred eCCcccCCCCC-CCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcC-CCcEEE
Q 005624 526 QSNFKLPADAK-VPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQLI 603 (687)
Q Consensus 526 ~~~F~lp~~~~-~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g-~~~~l~ 603 (687)
.|.|.++.+.. .|+||||+||||||+++++++...... ...+++||||+|+.+ |.+|.+||+++.+.. ...+++
T Consensus 93 ~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~---~~~~i~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~ 168 (234)
T cd06183 93 FGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPE---DKTKISLLYANRTEE-DILLREELDELAKKHPDRFKVH 168 (234)
T ss_pred ccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcC---cCcEEEEEEecCCHH-HhhhHHHHHHHHHhCcccEEEE
Confidence 78898865554 799999999999999999999876421 136899999999987 899999999998763 455778
Q ss_pred EEEecCCCC----ccccchhhhcchHHHHhc-ccCCcEEEEECCchhhHH-HHHHHHHH
Q 005624 604 VAFSREGPT----KEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMAR-DVHRTLHT 656 (687)
Q Consensus 604 ~afSr~~~~----k~yVq~~l~e~~~~v~~~-i~~~~~iYvCG~a~~M~~-~V~~~L~~ 656 (687)
+++++.+.. .+++++.+.+.. ... ...+..+|+||| ++|++ ++++.|.+
T Consensus 169 ~~~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~~icGp-~~~~~~~~~~~l~~ 223 (234)
T cd06183 169 YVLSRPPEGWKGGVGFITKEMIKEH---LPPPPSEDTLVLVCGP-PPMIEGAVKGLLKE 223 (234)
T ss_pred EEEcCCCcCCccccceECHHHHHHh---CCCCCCCCeEEEEECC-HHHHHHHHHHHHHH
Confidence 888875432 455554432210 000 124678999999 99999 99888864
|
Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH. |
| >PRK06756 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=172.57 Aligned_cols=137 Identities=22% Similarity=0.289 Sum_probs=113.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
||+|+|+|+|+|||||++|+.|++++.+.+ ..+++.|+.+... ...+.+++.+||++||||.|.+|+++..|+
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g--~~v~~~~~~~~~~-----~~~~~~~d~vi~gspt~~~g~~p~~~~~fl 73 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETE--NEIEVIDIMDSPE-----ASILEQYDGIILGAYTWGDGDLPDDFLDFY 73 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcC--CeEEEeehhccCC-----HHHHhcCCeEEEEeCCCCCCCCcHHHHHHH
Confidence 579999999999999999999999998765 4567778765432 135778999999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 253 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~ 253 (687)
+.+... .++++++++||+|++.|.+||.+.+.+.+.|+++|++.+.+....+-. ..+++++.|.
T Consensus 74 ~~l~~~-----~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~-p~~~d~~~~~ 137 (148)
T PRK06756 74 DAMDSI-----DLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVELT-PEDEDVEKCL 137 (148)
T ss_pred HHHhcC-----CCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEecC-CCHHHHHHHH
Confidence 988643 488999999999999999999999999999999999998875544322 2356665543
|
|
| >TIGR02911 sulfite_red_B sulfite reductase, subunit B | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-20 Score=193.01 Aligned_cols=176 Identities=16% Similarity=0.209 Sum_probs=128.0
Q ss_pred ChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCC-
Q 005624 450 PLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN- 528 (687)
Q Consensus 450 p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~- 528 (687)
-+|||+.+.+|...+|+|||++.+ .++++|+|+. .|.+|++|.++.+|+ .+.|..+.|+
T Consensus 32 ~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~-----------~G~~S~~L~~l~~Gd------~v~i~gP~G~~ 91 (261)
T TIGR02911 32 KPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRR-----------VGKVTDEVFTLKEGD------NLFLRGPYGNG 91 (261)
T ss_pred CCCcEEEEEecCCCccceecCCCC---CCeEEEEEEe-----------CchhhHHHHcCCCCC------EEEEecCCCCC
Confidence 468888666676678999999853 4678887752 388999999877765 3555556566
Q ss_pred cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEec
Q 005624 529 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 608 (687)
Q Consensus 529 F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr 608 (687)
|.++.+..+|++|||+||||||++++++++..... ..++++||||+|+.+ |.+|.+||++++++. ++...+++
T Consensus 92 f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~---~~~~v~L~~~~r~~~-~~~~~~eL~~l~~~~---~~~~~~~~ 164 (261)
T TIGR02911 92 FDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPK---EIKSLNLILGFKTPD-DILFKEDIAEWKGNI---NLTLTLDE 164 (261)
T ss_pred cccCccCCceEEEEecccCcHHHHHHHHHHHhCcc---cCceEEEEEecCCHH-HhhHHHHHHHHHhcC---cEEEEEcC
Confidence 87776556899999999999999999998765321 125799999999997 999999999998753 24445554
Q ss_pred CCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 609 EGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 609 ~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
..+ ..+++++.+.+.. +.+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 165 ~~~~~~~~~g~v~~~l~~~~--~~~--~~~~~v~lCGp-~~mv~~~~~~L~~~ 212 (261)
T TIGR02911 165 AEEDYKGNIGLVTKYIPELT--LKD--IEEVQAIVVGP-PIMMKFTVQELLKK 212 (261)
T ss_pred CCCCCcCCeeccCHhHHhcc--CCC--ccceEEEEECC-HHHHHHHHHHHHHc
Confidence 321 2356665443310 001 13578999999 99999999888654
|
Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. |
| >COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.9e-20 Score=190.43 Aligned_cols=179 Identities=18% Similarity=0.318 Sum_probs=129.0
Q ss_pred ChHHHHHHHcCCC---cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEe
Q 005624 450 PLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 450 p~~~~l~~~~p~l---~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v~ 525 (687)
-+|||+.+-++.- ..|.|||+|+|... ..+.|+|++. ..|..|+||+ ++++|+ .+.|..+
T Consensus 36 ~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~-~~~~isVk~~---------~~G~~S~~Lh~~lk~Gd------~l~v~~P 99 (266)
T COG1018 36 EPGQYITVGLPNGGEPLLRAYSLSSAPDED-SLYRISVKRE---------DGGGGSNWLHDHLKVGD------TLEVSAP 99 (266)
T ss_pred CCCCeEEEEecCCCceeeEEEEeccCCCCC-ceEEEEEEEe---------CCCcccHHHHhcCCCCC------EEEEecC
Confidence 4678876555533 56999999999743 5677777643 2388999999 666665 4667667
Q ss_pred eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005624 526 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 605 (687)
Q Consensus 526 ~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~a 605 (687)
.|.|.++..+..|++|||+|+|||||+||++...... . .++.|+|++|+++ |..|+|| +.+..+......+..
T Consensus 100 ~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~----~-~~v~l~h~~R~~~-~~af~de-~~l~~~~~~~~~~~~ 172 (266)
T COG1018 100 AGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG----P-ADVVLVHAARTPA-DLAFRDE-LELAAELPNALLLGL 172 (266)
T ss_pred CCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC----C-CCEEEEEecCChh-hcchhhH-HHHHhhCCCCeeEEE
Confidence 8999998867779999999999999999999987643 2 5799999999997 9999999 888877664333333
Q ss_pred EecCCCCccccchhhhcchHHHHhcccC-CcEEEEECCchhhHHHHHHHHHHHH
Q 005624 606 FSREGPTKEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIV 658 (687)
Q Consensus 606 fSr~~~~k~yVq~~l~e~~~~v~~~i~~-~~~iYvCG~a~~M~~~V~~~L~~i~ 658 (687)
+...+...+|.. ...+...+.. +..+|+||| .+|+++|...|.+.-
T Consensus 173 ~~~~~~~~g~~~------~~~l~~~~~~~~r~~y~CGp-~~fm~av~~~l~~~g 219 (266)
T COG1018 173 YTERGKLQGRID------VSRLLSAAPDGGREVYLCGP-GPFMQAVRLALEALG 219 (266)
T ss_pred EEecCCcccccc------HHHHhccCCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 332111122221 1111112222 389999999 899999999986654
|
|
| >TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-20 Score=172.86 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=103.0
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeE-EecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFK-VVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~-v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|+++|+|+|+|||||++|+.|++.+...+ ..++ +.++.++... ..++.+++.+||++||||.|.+|+++..|+
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g--~~v~~~~~~~~~~~~----~~~~~~~d~iilgs~t~~~g~~p~~~~~fl 74 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDG--HEVDILHRIGTLADA----PLDPENYDLVFLGTWTWERGRTPDEMKDFI 74 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCC--eeEEecccccccccC----cCChhhCCEEEEEcCeeCCCcCCHHHHHHH
Confidence 58999999999999999999999998765 3344 4455543211 123567899999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCch--HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELV 256 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l 256 (687)
+++.. ++++|+|||+||+.| ++||.++++++++|++++..--+....++ ....+.+..|.+++
T Consensus 75 ~~l~~--------~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~~~~~~i~~~~~~--~~d~~~~~~~~~~~ 139 (140)
T TIGR01754 75 AELGY--------KPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSSHPVLKIEQMPHG--EQDGRAIYDWLEGV 139 (140)
T ss_pred HHhcc--------cCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCcCCceeEecCCcc--cccHHHHHHHHHHh
Confidence 99853 578999999999999 79999999999999776222111121111 12356788998875
|
This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation. |
| >TIGR01752 flav_long flavodoxin, long chain | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=175.69 Aligned_cols=140 Identities=28% Similarity=0.451 Sum_probs=115.0
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHH
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~ 185 (687)
+|.|+|+|+|||||++|+.|++.+.. ..++++++.+.+. .++..++.+||++||||.|++|+++..|++.
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~----~~~~i~~~~~~~~------~~l~~~d~ii~gspty~~g~~p~~~~~fl~~ 70 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE----DDVDVFNIAKASK------EDLNAYDKLILGTPTWGVGELQEDWEDFLPT 70 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEcccCCH------hHHhhCCEEEEEecCCCCCcCcHHHHHHHHH
Confidence 47999999999999999999999863 2367888877653 3477899999999999999999999999998
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCc-h-HHHHHHHHHHHHHHHHcCCcccccc----------------------ccccC
Q 005624 186 FTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV----------------------GLGDD 241 (687)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~ak~ld~~L~~lGa~~l~~~----------------------g~gD~ 241 (687)
|... .+++++++|||+||+. | ++||.+++.+.+.|++.|++.+... .++.+
T Consensus 71 l~~~-----~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~~~~~~~~~~~~~f~gl~~~~~ 145 (167)
T TIGR01752 71 LEEL-----DFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDED 145 (167)
T ss_pred hhcC-----CCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCcccccchheeCCCEEEEEEecCC
Confidence 8643 4789999999999984 7 7999999999999999999977653 11223
Q ss_pred CC--CcHHhHHHHHHHHHHHH
Q 005624 242 DQ--CIEDDFSAWRELVWPEL 260 (687)
Q Consensus 242 ~~--~~e~~f~~W~~~l~~~L 260 (687)
++ -.+++++.|.++|.+++
T Consensus 146 ~~~~~~~~r~~~w~~~~~~~~ 166 (167)
T TIGR01752 146 NQPDLTEERIEKWVEQIKPEF 166 (167)
T ss_pred CchhhhHHHHHHHHHHHHHhh
Confidence 22 25788999998876653
|
Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli. |
| >cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.6e-20 Score=183.49 Aligned_cols=172 Identities=20% Similarity=0.271 Sum_probs=124.7
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhccc-CCCCCCCCCceeeEEEeeC
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNS-LPMEKSNDCSWAPIFVRQS 527 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~-~~~~~~~~~~~~~v~v~~~ 527 (687)
..+|||+.+.+|....|+|||+|.|.. .+.+.|+|+.+. . .+.+|.||.+. .+|+ .+.|..+.|
T Consensus 26 ~~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~~----~----g~~~s~~l~~~~~~Gd------~v~i~gP~g 90 (211)
T cd06185 26 FEPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLREP----A----SRGGSRYMHELLRVGD------ELEVSAPRN 90 (211)
T ss_pred CCCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEecc----C----CCchHHHHHhcCCCCC------EEEEcCCcc
Confidence 457888865556666899999999863 377888776431 1 13479999764 4454 456666678
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
.|.++.+ .+|+||||+||||||+++++++..... .++.||||+|+.+ |.+|.+||+++. .. .+.+.++
T Consensus 91 ~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~~~------~~v~l~~~~r~~~-~~~~~~~l~~~~--~~--~~~~~~~ 158 (211)
T cd06185 91 LFPLDEA-ARRHLLIAGGIGITPILSMARALAARG------ADFELHYAGRSRE-DAAFLDELAALP--GD--RVHLHFD 158 (211)
T ss_pred CCcCCCC-CCcEEEEeccchHhHHHHHHHHHHhCC------CCEEEEEEeCCCc-chhHHHHHhhhc--CC--cEEEEEC
Confidence 8988653 579999999999999999999876421 5799999999986 889999999987 22 3555566
Q ss_pred cCCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 608 REGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 608 r~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
++. ...++++.+.+ +..+..+|+||| +.|++++.+.|.+.
T Consensus 159 ~~~-~~~~~~~~~~~--------~~~~~~vyicGp-~~m~~~~~~~l~~~ 198 (211)
T cd06185 159 DEG-GRLDLAALLAA--------PPAGTHVYVCGP-EGMMDAVRAAAAAL 198 (211)
T ss_pred CCC-CccCHHHHhcc--------CCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 543 23333333321 234679999999 89999999988653
|
PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal. |
| >PTZ00319 NADH-cytochrome B5 reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.9e-20 Score=193.82 Aligned_cols=192 Identities=15% Similarity=0.212 Sum_probs=130.0
Q ss_pred CChHHHHHHHcCC-------CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceee
Q 005624 449 PPLGVFFAAIVPR-------LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 521 (687)
Q Consensus 449 ~p~~~~l~~~~p~-------l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~ 521 (687)
..+|||+.+.++. ...|+||++|+|. ..+.++|+|+.+......-....|.+|+||.++.+|+ .+.
T Consensus 64 ~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~-~~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~ 136 (300)
T PTZ00319 64 LPIGQHIVFRCDCTTPGKPETVQHSYTPISSDD-EKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGD------KIE 136 (300)
T ss_pred CccceEEEEEEEeCCCCccceEEeeeccCCCcc-cCCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCC------EEE
Confidence 3468887544432 2469999999885 3478998887652111000123588999998887766 355
Q ss_pred EEEeeCCcccCCC---------------CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCccccc
Q 005624 522 IFVRQSNFKLPAD---------------AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIY 586 (687)
Q Consensus 522 v~v~~~~F~lp~~---------------~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly 586 (687)
|..+.|.|.++.+ ...|++|||+|||||||++++++.+.... ...++.|+||+|+.+ |.+|
T Consensus 137 i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~---~~~~i~liyg~r~~~-dl~~ 212 (300)
T PTZ00319 137 MRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKE---DRTKVFLVYANQTED-DILL 212 (300)
T ss_pred EEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCCC---CCceEEEEEecCCHH-HhhH
Confidence 6666777765421 12589999999999999999998875421 124799999999997 9999
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCCC-----CccccchhhhcchHHHHhccc------CCcEEEEECCchhhHH-HHHHHH
Q 005624 587 EDELNNFVQSGALSQLIVAFSREGP-----TKEYVQHKMMEKSSDIWNMLS------EGAYLYVCGDAKSMAR-DVHRTL 654 (687)
Q Consensus 587 ~del~~~~~~g~~~~l~~afSr~~~-----~k~yVq~~l~e~~~~v~~~i~------~~~~iYvCG~a~~M~~-~V~~~L 654 (687)
.+||+++. .....+++.+.+++.. ..+||+..+.+.. + ...+ .+..+|+||| ++|++ .+.+.|
T Consensus 213 ~~eL~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~--~-~~~~~~~~~~~~~~vyiCGp-~~mv~~~~~~~L 287 (300)
T PTZ00319 213 RKELDEAA-KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAH--L-PVPDPQNSGIKKVMALMCGP-PPMLQMAVKPNL 287 (300)
T ss_pred HHHHHHHh-hCCCEEEEEEECCCCCCCcccccceeCHHHHHhh--c-CCccccccccCCeEEEEECC-HHHHHHHHHHHH
Confidence 99999965 4445678888887422 3466665443321 0 1011 3468999999 99988 466666
Q ss_pred HH
Q 005624 655 HT 656 (687)
Q Consensus 655 ~~ 656 (687)
.+
T Consensus 288 ~~ 289 (300)
T PTZ00319 288 EK 289 (300)
T ss_pred HH
Confidence 54
|
|
| >TIGR01753 flav_short flavodoxin, short chain | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-19 Score=166.93 Aligned_cols=135 Identities=23% Similarity=0.300 Sum_probs=110.9
Q ss_pred EEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCC-chHHHHHHH
Q 005624 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARFYKW 185 (687)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p-dna~~F~~~ 185 (687)
|+|+|+|+||||+.+|+.|++.+.+.+ ..++++++.+.++ .++..++.+||++|||+.|.+| +++..|+++
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g--~~v~~~~~~~~~~------~~l~~~d~iilgspty~~g~~p~~~~~~f~~~ 72 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEAG--AEVDLLEVADADA------EDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEE 72 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhcC--CeEEEEEcccCCH------HHHhcCCEEEEEcCCCCCCCCCcchHHHHHHH
Confidence 589999999999999999999998765 4577888887764 3567899999999999999999 999999999
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCC--CcHHhHHHHHHH
Q 005624 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWREL 255 (687)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~ 255 (687)
|... .+++++++|||+|++.|+ ||.+++.++++|+++|++++.+....+... ...+...+|.+.
T Consensus 73 l~~~-----~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~~~~ 138 (140)
T TIGR01753 73 LEDI-----DLGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKVDGDPEEEDLDKCREFAKD 138 (140)
T ss_pred hhhC-----CCCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeeeecCCCHHHHHHHHHHHHH
Confidence 9753 478999999999999998 999999999999999999998744433221 223334556544
|
Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction. |
| >cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-19 Score=183.80 Aligned_cols=147 Identities=20% Similarity=0.319 Sum_probs=107.1
Q ss_pred ccccccCCCCCCCC--CeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCC---CCCCC
Q 005624 464 PRYYSISSSPRVAP--SRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPA---DAKVP 538 (687)
Q Consensus 464 pR~YSIsSsp~~~~--~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~---~~~~P 538 (687)
.|+|||||+|...+ ++++|+|+. .|.+|+||.+...... ..+..+.|..+.|.|.++. +..++
T Consensus 60 ~R~ySias~p~~~~~~~~l~l~vk~-----------~G~~T~~L~~~~~~~~-~~G~~v~v~gP~G~f~~~~~~~~~~~~ 127 (220)
T cd06197 60 VRTFTVSSAPPHDPATDEFEITVRK-----------KGPVTGFLFQVARRLR-EQGLEVPVLGVGGEFTLSLPGEGAERK 127 (220)
T ss_pred eeeEEeecCCccCCCCCEEEEEEEe-----------CCCCCHHHHHhhhccc-CCCceEEEEecCCcccCCcccccCCce
Confidence 49999999996542 678877642 2888999988654210 0012466777788998875 34578
Q ss_pred eEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccch
Q 005624 539 IIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQH 618 (687)
Q Consensus 539 iImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~ 618 (687)
+||||+|||||||++++++...... ...+++|+||+|+++ |.+|.+||+++... ...... ++
T Consensus 128 illIagG~GItP~~sil~~l~~~~~---~~~~v~l~~~~r~~~-~~~~~~el~~~~~~--~~~~~~-~~----------- 189 (220)
T cd06197 128 MVWIAGGVGITPFLAMLRAILSSRN---TTWDITLLWSLREDD-LPLVMDTLVRFPGL--PVSTTL-FI----------- 189 (220)
T ss_pred EEEEecccchhhHHHHHHHHHhccc---CCCcEEEEEEecchh-hHHHHHHHHhccCC--ceEEEE-EE-----------
Confidence 9999999999999999998875321 136899999999997 99999999876531 111111 11
Q ss_pred hhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 619 KMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 619 ~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
.+.||+||| ++|+++|.+.+.+
T Consensus 190 ---------------~~~v~~CGP-~~m~~~~~~~~~~ 211 (220)
T cd06197 190 ---------------TSEVYLCGP-PALEKAVLEWLEG 211 (220)
T ss_pred ---------------eccEEEECc-HHHHHHHHHHhhh
Confidence 117999999 9999999988774
|
Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity |
| >COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-19 Score=179.66 Aligned_cols=184 Identities=18% Similarity=0.330 Sum_probs=146.8
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEEEe
Q 005624 464 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIG 543 (687)
Q Consensus 464 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiImIa 543 (687)
-|.||+||-|.+. +.|.+.|++-..+...+....|+||+|+.++++|+ ++.|+.+.|.|... +.++|+|+|+
T Consensus 211 ~rAYSmAsYPeE~-giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGD------KvtisGPfGEfFaK-dtdaemvFig 282 (410)
T COG2871 211 IRAYSMASYPEEK-GIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGD------KVTISGPFGEFFAK-DTDAEMVFIG 282 (410)
T ss_pred HHHhhhhcChhhc-CeEEEEEEeccCCCCCCCCCccceeeeEEeecCCC------eEEEeccchhhhhc-cCCCceEEEe
Confidence 4999999999754 67887777665544555778999999999999987 46788888888875 4589999999
Q ss_pred cCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCc------cccc
Q 005624 544 PGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTK------EYVQ 617 (687)
Q Consensus 544 ~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k------~yVq 617 (687)
+|.|.||+||.+-+.+.+... .+++.+.||+|+.. +.+|.||+++++++.++++.|+|.|...++. +++.
T Consensus 283 GGAGmapmRSHIfDqL~rlhS---kRkis~WYGARS~r-E~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFih 358 (410)
T COG2871 283 GGAGMAPMRSHIFDQLKRLHS---KRKISFWYGARSLR-EMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFIH 358 (410)
T ss_pred cCcCcCchHHHHHHHHHhhcc---cceeeeeeccchHH-HhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHHH
Confidence 999999999999998876543 37899999999997 8999999999999999999999999876432 3444
Q ss_pred hhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhC
Q 005624 618 HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQG 662 (687)
Q Consensus 618 ~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~ 662 (687)
..+.+. .+.++- .++..+|+||| +-|..+|.+.|.+...+..
T Consensus 359 nv~~en--~Lk~h~aPEDceyYmCGP-p~mNasvikmL~dlGVE~e 401 (410)
T COG2871 359 NVLYEN--YLKDHEAPEDCEYYMCGP-PLMNASVIKMLKDLGVERE 401 (410)
T ss_pred HHHHhh--hhhcCCCchheeEEeeCc-chhhHHHHHHHHhcCcccc
Confidence 444443 122221 46789999999 8899999998888765543
|
|
| >PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-19 Score=186.15 Aligned_cols=166 Identities=23% Similarity=0.297 Sum_probs=124.2
Q ss_pred CChHHHHHHHcCCC---cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005624 449 PPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 449 ~p~~~~l~~~~p~l---~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~ 525 (687)
..+|||+.+.+|.. .+|+|||+|+| .+.++|+|+. .|.+|+||.++.+|+ .+.|..+
T Consensus 32 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~-----------~G~~t~~l~~l~~G~------~v~i~gP 91 (250)
T PRK00054 32 MKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRK-----------VGEGTKKLSKLKEGD------ELDIRGP 91 (250)
T ss_pred CCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEE-----------cChHHHHHhcCCCCC------EEEEEcc
Confidence 35788876544543 58999999998 3678887753 277899999877765 4566666
Q ss_pred eCC-cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005624 526 QSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 604 (687)
Q Consensus 526 ~~~-F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~ 604 (687)
.|+ |.++. ..+|+||||+||||||+++++++....+ .++.|+|++|+.+ |++|.+||+++.+ +++
T Consensus 92 ~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~el~~~~~------~~~ 157 (250)
T PRK00054 92 LGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKKKG------VEVTTVLGARTKD-EVIFEEEFAKVGD------VYV 157 (250)
T ss_pred cCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHHcC------CcEEEEEEcCCHH-HhhhHHHHHhcCC------EEE
Confidence 665 88764 4579999999999999999999986532 4789999999997 9999999998431 222
Q ss_pred EEecCC--CCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 605 AFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 605 afSr~~--~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
. ++++ ..++||++.+.+.. ....+||+||| ++|++++.+.|.+.
T Consensus 158 ~-~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp-~~m~~~v~~~l~~~ 203 (250)
T PRK00054 158 T-TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGP-EIMMKKVVEILKEK 203 (250)
T ss_pred E-ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 2 2333 24578888765432 23458999999 99999999988763
|
|
| >COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.9e-19 Score=182.38 Aligned_cols=177 Identities=22% Similarity=0.306 Sum_probs=138.6
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCC
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 528 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~ 528 (687)
..+|||+.+.+|....|+|||||.+.. .+.+.|.+.+. ..|.+|.++..+.+++ .+.+..+.|+
T Consensus 36 ~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~~---------~~G~~T~~i~~~k~gd------~i~v~GP~G~ 99 (252)
T COG0543 36 FKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRVY---------EVGKVTKYIFGLKEGD------KIRVRGPLGN 99 (252)
T ss_pred cCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEEE---------eCChHHHHHhhccCCC------EEEEEcCCCC
Confidence 568999988878888999999999874 46566655443 3599999999997766 3556666788
Q ss_pred cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEec
Q 005624 529 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 608 (687)
Q Consensus 529 F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr 608 (687)
+.+..+..+|+++||+|||+||+++++++....+ ...+++++||.|++. |.++.+|++++... +++.+.+
T Consensus 100 ~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~----~~~~V~~~~G~~~~~-dl~~~~el~~~~~~----~~~~~~~- 169 (252)
T COG0543 100 GFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG----DANKVTLLYGARTAK-DLLLLDELEELAEK----EVHPVTD- 169 (252)
T ss_pred CccccccCCcEEEEecccCHhHHHHHHHHHHhcC----CCceEEEEEeccChh-hcccHHHHHHhhcC----cEEEEEC-
Confidence 7776667788999999999999999999987643 236899999999997 99999999999975 4555555
Q ss_pred CCC--Ccccc-chhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHH
Q 005624 609 EGP--TKEYV-QHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 658 (687)
Q Consensus 609 ~~~--~k~yV-q~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~ 658 (687)
+++ .++|| ++.+.+... .+...+|+||| +.|+++|.+.+.+-.
T Consensus 170 ~~~~G~~G~v~~~~~~~~~~------~~~~~v~~cGp-~~M~~~v~~~~~~~g 215 (252)
T COG0543 170 DGWKGRKGFVTTDVLKELLD------LEVDDVYICGP-PAMVKAVREKLKEYG 215 (252)
T ss_pred CCCCccCcceeHHHHhhhcc------ccCCEEEEECC-HHHHHHHHHHHHhcC
Confidence 332 57888 666654321 14689999999 999999998877643
|
|
| >cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.9e-19 Score=180.92 Aligned_cols=164 Identities=23% Similarity=0.285 Sum_probs=120.1
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCC
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 528 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~ 528 (687)
.-+|||+.+.+|....|+|||+|.| +.++|+|+. .|.+|+||.++.+|+ .+.|..+.|+
T Consensus 24 ~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~-----------~G~~s~~L~~l~~Gd------~v~i~gP~G~ 82 (233)
T cd06220 24 FKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVKK-----------VGEATSALHDLKEGD------KLGIRGPYGN 82 (233)
T ss_pred CCCCceEEEEeCCCCcceeEEecCC----CeEEEEEEe-----------cChHHHHHHhcCCCC------EEEEECcCCC
Confidence 3478998655555556999999987 568877642 388999999877665 3556666666
Q ss_pred -cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 529 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 529 -F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
|.++ .+|+||||+|||||||++++++.... ++++||||+|+++ |.+|.+||++. .++.+..+
T Consensus 83 ~f~~~---~~~~vliAgGtGitP~~sil~~~~~~-------~~i~l~~~~r~~~-d~~~~~eL~~~------~~~~~~~~ 145 (233)
T cd06220 83 GFELV---GGKVLLIGGGIGIAPLAPLAERLKKA-------ADVTVLLGARTKE-ELLFLDRLRKS------DELIVTTD 145 (233)
T ss_pred CccCC---CCeEEEEecCcChHHHHHHHHHHHhc-------CCEEEEEecCChH-HChhHHHHhhC------CcEEEEEe
Confidence 8775 57999999999999999999987642 5799999999997 99999999971 12333332
Q ss_pred cC-CCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 608 RE-GPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 608 r~-~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
.. ....+++++.+.+.. ......||+||| ++|.+++.+.|.+.
T Consensus 146 ~~~~~~~g~~~~~l~~~~------~~~~~~vyicGp-~~m~~~~~~~L~~~ 189 (233)
T cd06220 146 DGSYGFKGFVTDLLKELD------LEEYDAIYVCGP-EIMMYKVLEILDER 189 (233)
T ss_pred CCCCcccceehHHHhhhc------ccCCCEEEEECC-HHHHHHHHHHHHhc
Confidence 11 113567776554321 223468999999 99999999988653
|
Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster. |
| >cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-18 Score=179.59 Aligned_cols=171 Identities=15% Similarity=0.120 Sum_probs=121.6
Q ss_pred ChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEee
Q 005624 450 PLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 450 p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~ 526 (687)
.+|||+.+.+| ....|+|||+|.|.. .+.++|+|+. .|..|+||.++.+|+ .+.|..+.
T Consensus 26 ~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~-----------~G~~t~~l~~~~~G~------~l~i~gP~ 87 (243)
T cd06192 26 RPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEI-----------RGPKTKLIAELKPGE------KLDVMGPL 87 (243)
T ss_pred CCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEE-----------cCchHHHHHhCCCCC------EEEEEccC
Confidence 46788755443 345799999999853 4678887642 378899999887765 35565566
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|+|.+..+..++++|||+|||||||++++++..... .+++||||+|+++ |.+|.+||+++. . ..+..
T Consensus 88 G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~el~~~~----~--~~~~~ 154 (243)
T cd06192 88 GNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG------NKVTVLAGAKKAK-EEFLDEYFELPA----D--VEIWT 154 (243)
T ss_pred CCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC------CeEEEEEecCcHH-HHHHHHHHHhhc----C--eEEEE
Confidence 776654444679999999999999999999976531 5799999999997 999999998872 1 22233
Q ss_pred ecCCC--CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHH
Q 005624 607 SREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 658 (687)
Q Consensus 607 Sr~~~--~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~ 658 (687)
++++. ..+++++... ... ...+..+|+||| ++|++++++.|.+..
T Consensus 155 ~~~~~~~~~g~v~~~~~-----~~~-~~~~~~v~icGp-~~mv~~~~~~l~~~g 201 (243)
T cd06192 155 TDDGELGLEGKVTDSDK-----PIP-LEDVDRIIVAGS-DIMMKAVVEALDEWL 201 (243)
T ss_pred ecCCCCccceeechhhh-----hhh-cccCCEEEEECC-HHHHHHHHHHHHhhc
Confidence 44332 3455554311 111 123468999999 999999999988753
|
Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi |
| >PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-18 Score=184.07 Aligned_cols=171 Identities=16% Similarity=0.154 Sum_probs=121.8
Q ss_pred ChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCcee-eEEEeeC
Q 005624 450 PLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQS 527 (687)
Q Consensus 450 p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~-~v~v~~~ 527 (687)
-+|||+.+.++.. .+|+|||+|.+.. .+.++|+|+. .|..|.||.++.+|+ .+ .|..+.|
T Consensus 29 ~pGQfv~l~~~~~~~~rpySias~~~~-~~~i~l~vk~-----------~G~~T~~L~~l~~Gd------~v~~i~GP~G 90 (281)
T PRK06222 29 KPGQFVIVRIDEKGERIPLTIADYDRE-KGTITIVFQA-----------VGKSTRKLAELKEGD------SILDVVGPLG 90 (281)
T ss_pred CCCeEEEEEeCCCCCceeeEeeEEcCC-CCEEEEEEEe-----------CCcHHHHHhcCCCCC------EEeeEEcCCC
Confidence 4788886544432 3589999997753 4678887753 288899999887765 34 4666667
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
+|..+.+ .+|+||||+|+||||+++++++....+ .+++||||.|+++ |.+|.+||+++... +++ .+
T Consensus 91 ~~~~~~~-~~~~llIaGGiGiaPl~~l~~~l~~~~------~~v~l~~g~r~~~-d~~~~~el~~~~~~-----~~v-~~ 156 (281)
T PRK06222 91 KPSEIEK-FGTVVCVGGGVGIAPVYPIAKALKEAG------NKVITIIGARNKD-LLILEDEMKAVSDE-----LYV-TT 156 (281)
T ss_pred CCcccCC-CCeEEEEeCcCcHHHHHHHHHHHHHCC------CeEEEEEecCCHH-HhhcHHHHHhhCCe-----EEE-Ec
Confidence 7654433 579999999999999999999875422 4799999999997 99999999987642 222 23
Q ss_pred cCCC--CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 608 REGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 608 r~~~--~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
.+++ .+++|++.+.+.. ........||+||| ++|+++|.+.|.+.
T Consensus 157 ~d~~~g~~G~v~~~l~~~~----~~~~~~~~vy~CGP-~~M~~~v~~~l~~~ 203 (281)
T PRK06222 157 DDGSYGRKGFVTDVLKELL----ESGKKVDRVVAIGP-VIMMKFVAELTKPY 203 (281)
T ss_pred CCCCcCcccchHHHHHHHh----hcCCCCcEEEEECC-HHHHHHHHHHHHhc
Confidence 3332 4567776554321 11112457999999 99999999987654
|
|
| >COG0716 FldA Flavodoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.9e-18 Score=161.52 Aligned_cols=143 Identities=24% Similarity=0.328 Sum_probs=114.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|++|+|+|+|+|||||.+|+.|++.|.+.+. .+. ++......+ ..+..++.++++++|||.|+.|+++.+|+
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~--~~~-~~~~~~~~~-----~~~~~~d~~~~g~~t~~~ge~~~~~~~f~ 72 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGADGF--EVD-IDIRPGIKD-----DLLESYDELLLGTPTWGAGELPDDWYDFI 72 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccCCc--eEE-EeecCCcch-----hhhccCCEEEEEeCCCCCCcCCccHHHHH
Confidence 6899999999999999999999999987652 222 222222211 12347899999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHH-HHHHHHHHHHHHHHcC--Cccccccccc--cC--CCCcHHhHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEH-FNKIAKVVDEILANQG--AKRLVPVGLG--DD--DQCIEDDFSAWRELV 256 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~-f~~~ak~ld~~L~~lG--a~~l~~~g~g--D~--~~~~e~~f~~W~~~l 256 (687)
.-+.. ..+++++||+||+||+.|.. ||.+...+.+.|+..| +....++... |. ....++....|.+++
T Consensus 73 ~~~~~-----~~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~w~~~~ 147 (151)
T COG0716 73 EELEP-----IDFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGYIFDASPNEEDEKRIKEWVKQI 147 (151)
T ss_pred HHhcc-----cCcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccceeccCCCCCccHHHHHHHHHHH
Confidence 98875 25899999999999999977 9999999999999999 5566665444 22 345788999999988
Q ss_pred HHH
Q 005624 257 WPE 259 (687)
Q Consensus 257 ~~~ 259 (687)
+..
T Consensus 148 ~~~ 150 (151)
T COG0716 148 LNE 150 (151)
T ss_pred Hhh
Confidence 753
|
|
| >cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-18 Score=178.22 Aligned_cols=171 Identities=15% Similarity=0.168 Sum_probs=121.1
Q ss_pred CChHHHHHHHcC-CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCcee-eEEEee
Q 005624 449 PPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p-~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~-~v~v~~ 526 (687)
..+|||+.+.++ ....|+|||+|.|.. .+.++|+|+. .|..|.+|.++.+|+ .+ .+..+.
T Consensus 27 ~~pGQf~~l~~~~~~~~~pySi~s~~~~-~~~~~~~vk~-----------~G~~t~~l~~l~~G~------~v~~i~gP~ 88 (248)
T cd06219 27 AKPGQFVIVRADEKGERIPLTIADWDPE-KGTITIVVQV-----------VGKSTRELATLEEGD------KIHDVVGPL 88 (248)
T ss_pred CCCCcEEEEEcCCCCCccceEeEEEcCC-CCEEEEEEEe-----------CCchHHHHHhcCCCC------EeeeeecCC
Confidence 357888754333 234699999998753 3678877742 277899998887765 34 355566
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|.|.+..+ ..|+||||+||||||+++++++....+ .+++||||+|+.+ |++|.+||+++.++ ++++
T Consensus 89 G~~~~~~~-~~~~lliagG~GiaP~~~~l~~~~~~~------~~v~l~~~~r~~~-~~~~~~el~~l~~~-----~~~~- 154 (248)
T cd06219 89 GKPSEIEN-YGTVVFVGGGVGIAPIYPIAKALKEAG------NRVITIIGARTKD-LVILEDEFRAVSDE-----LIIT- 154 (248)
T ss_pred CCCeecCC-CCeEEEEeCcccHHHHHHHHHHHHHcC------CeEEEEEEcCCHH-HhhhHHHHHhhcCe-----EEEE-
Confidence 77765433 579999999999999999999976532 4799999999996 99999999999642 2222
Q ss_pred ecCCC--CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~--~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+++.+ ..+|+++.+.+.. .+ ......||+||| ++|++.+.+.|.+
T Consensus 155 ~~~~~~~~~g~v~~~l~~~~---~~-~~~~~~vyiCGP-~~m~~~~~~~l~~ 201 (248)
T cd06219 155 TDDGSYGEKGFVTDPLKELI---ES-GEKVDLVIAIGP-PIMMKAVSELTRP 201 (248)
T ss_pred eCCCCCCccccchHHHHHHH---hc-cCCccEEEEECC-HHHHHHHHHHHHH
Confidence 34332 3467776554321 11 123458999999 9999999998864
|
Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD, |
| >PRK09267 flavodoxin FldA; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=162.08 Aligned_cols=142 Identities=27% Similarity=0.445 Sum_probs=114.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
||+|+|+|+|+||||+++|+.|++.+.. ..+.++|+++... .++..++.+||++|||+.|.+|+.+..|+
T Consensus 1 mmki~IiY~S~tGnT~~vA~~Ia~~l~~----~~~~~~~~~~~~~------~~l~~~d~vi~g~pt~~~G~~~~~~~~fl 70 (169)
T PRK09267 1 MAKIGIFFGSDTGNTEDIAKMIQKKLGK----DVADVVDIAKASK------EDFEAYDLLILGIPTWGYGELQCDWDDFL 70 (169)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEhhhCCH------hhHhhCCEEEEEecCcCCCCCCHHHHHHH
Confidence 5789999999999999999999999863 2357888877653 34778999999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCc-h-HHHHHHHHHHHHHHHHcCCcccccc---cccc-----------------C
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV---GLGD-----------------D 241 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~ak~ld~~L~~lGa~~l~~~---g~gD-----------------~ 241 (687)
+.+... .|+++++++||+||+. | ++||.+.+.+.+.|+..|++.+... |... .
T Consensus 71 ~~~~~~-----~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~~d~ 145 (169)
T PRK09267 71 PELEEI-----DFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDGKFVGLALDE 145 (169)
T ss_pred HHHhcC-----CCCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccceeeCCEEEEEEecC
Confidence 887543 4889999999999985 8 8999999999999999998855431 2111 1
Q ss_pred CC---CcHHhHHHHHHHHHHHH
Q 005624 242 DQ---CIEDDFSAWRELVWPEL 260 (687)
Q Consensus 242 ~~---~~e~~f~~W~~~l~~~L 260 (687)
+. -.++++++|.++|.+++
T Consensus 146 ~~~~~~td~~i~~w~~~i~~~~ 167 (169)
T PRK09267 146 DNQSELTDERIEAWVKQIKPEF 167 (169)
T ss_pred CCchhhhHHHHHHHHHHHHHHh
Confidence 11 14688999999987754
|
|
| >PRK05802 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-18 Score=184.39 Aligned_cols=169 Identities=11% Similarity=0.087 Sum_probs=118.5
Q ss_pred ChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEee
Q 005624 450 PLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 450 p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~ 526 (687)
-+|||+.+..| ....|+|||+|+|.. .+.+.|+++. .|..|++|.++.+|+. +.|..+.
T Consensus 96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~~~-~g~l~l~ik~-----------~G~~T~~L~~l~~Gd~------l~v~GP~ 157 (320)
T PRK05802 96 YPGSFVFLRNKNSSSFFDVPISIMEADTE-ENIIKVAIEI-----------RGVKTKKIAKLNKGDE------ILLRGPY 157 (320)
T ss_pred CCCceEEEEEcCCCCEeEEeeEecccCCC-CCEEEEEEEe-----------cChhHHHHhcCCCCCE------EEEeCCC
Confidence 36888754333 233599999999863 4778888754 3888999998888663 4444454
Q ss_pred --CCcccC---CCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcE
Q 005624 527 --SNFKLP---ADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 601 (687)
Q Consensus 527 --~~F~lp---~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~ 601 (687)
|.|.++ ....+++++||+|+||||+++++++....+ .+++||||.|+++ |.+|.+||+++..+..++
T Consensus 158 GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~------~~v~li~g~r~~~-~~~~~~el~~~~~~~~~~- 229 (320)
T PRK05802 158 WNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG------NKIIVIIDKGPFK-NNFIKEYLELYNIEIIEL- 229 (320)
T ss_pred CcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC------CcEEEEEeCCCHH-HHHHHHHHHHhhCceEEE-
Confidence 336653 233568999999999999999999886533 3799999999997 999999999986532211
Q ss_pred EEEEEecCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 602 LIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 602 l~~afSr~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
.+..++. .+++|++.+.+. +...||+||| +.|++.|.+.|.+.
T Consensus 230 ---~~~ddG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP-~~M~k~v~~~l~~~ 276 (320)
T PRK05802 230 ---NLLDDGELSEEGKDILKEIIKKE---------DINLIHCGGS-DILHYKIIEYLDKL 276 (320)
T ss_pred ---EecccCCCCccccchHHHHhcCC---------CCCEEEEECC-HHHHHHHHHHHhhh
Confidence 1112221 233444444321 2357999999 99999999988764
|
|
| >PLN02252 nitrate reductase [NADPH] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-18 Score=201.16 Aligned_cols=193 Identities=16% Similarity=0.215 Sum_probs=133.7
Q ss_pred CChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005624 449 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 449 ~p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~ 525 (687)
.++|||+.+.++ ....|+|||+|.+.. .+.++|+|+++...........|.+|+||.++.+|+. +.|..+
T Consensus 665 l~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd~------V~V~GP 737 (888)
T PLN02252 665 LPVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDT------IDVKGP 737 (888)
T ss_pred CCCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCCCCE------EEEecC
Confidence 467887754332 224699999999863 4689998876532111111235999999998877663 455444
Q ss_pred eCC--------cccCCC--CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHH
Q 005624 526 QSN--------FKLPAD--AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 595 (687)
Q Consensus 526 ~~~--------F~lp~~--~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~ 595 (687)
.|. |.++.+ ..++++|||+|||||||+++|++.+.... ...+++||||+|+.+ |++|++||+++++
T Consensus 738 ~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~---d~t~i~Liyg~Rt~~-Dil~~eEL~~la~ 813 (888)
T PLN02252 738 LGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPE---DKTEMSLVYANRTED-DILLREELDRWAA 813 (888)
T ss_pred ccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccC---CCCcEEEEEEECCHH-HhhHHHHHHHHHH
Confidence 454 455432 24799999999999999999999876422 236899999999997 9999999999998
Q ss_pred cC-CCcEEEEEEecCC-C----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHH-HHHHHHH
Q 005624 596 SG-ALSQLIVAFSREG-P----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLHT 656 (687)
Q Consensus 596 ~g-~~~~l~~afSr~~-~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~-V~~~L~~ 656 (687)
+. ..++++.++|++. . .+++|+..+.+.. ......+..+|+||| ++|++. ++..|.+
T Consensus 814 ~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~---l~~~~~~~~vyiCGP-p~Mi~~av~~~L~~ 877 (888)
T PLN02252 814 EHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREH---LPEGGDETLALMCGP-PPMIEFACQPNLEK 877 (888)
T ss_pred hCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHh---cccCCCCeEEEEeCC-HHHHHHHHHHHHHH
Confidence 76 4567888888743 1 3466665443221 111124568999999 999984 6666654
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-17 Score=204.40 Aligned_cols=186 Identities=17% Similarity=0.269 Sum_probs=133.2
Q ss_pred CChHHHHHHHcC--C-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005624 449 PPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 449 ~p~~~~l~~~~p--~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~ 525 (687)
..+|||+.+..| . ...|+|||+|.|. ..+.+.|+|+ ...|.+|+||.++.+|+. +.|..+
T Consensus 948 ~~pGQfv~l~~~~~g~~~~R~YS~~S~p~-~~~~i~l~Vr----------~~~G~~S~~L~~l~~Gd~------v~v~gp 1010 (1167)
T PTZ00306 948 LTLGQFIAIRGDWDGQQLIGYYSPITLPD-DLGVISILAR----------GDKGTLKEWISALRPGDS------VEMKAC 1010 (1167)
T ss_pred CCCCeEEEEEeeeCCeEEEEEeccCCCCC-CCCeEEEEEE----------cCCChhHHHHhhCCCCCE------EEEeCC
Confidence 467999864433 1 2249999999996 3467887663 125889999998888763 444332
Q ss_pred e----------CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHH
Q 005624 526 Q----------SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 595 (687)
Q Consensus 526 ~----------~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~ 595 (687)
. +.|.++.+..+|+||||+|||||||++++++.+.... .....+++||||+|+.+ |.+|.+||+++++
T Consensus 1011 ~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~-~~~~~~i~Llyg~r~~~-dl~~~~eL~~l~~ 1088 (1167)
T PTZ00306 1011 GGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPY-VDSIESIRLIYAAEDVS-ELTYRELLESYRK 1088 (1167)
T ss_pred cCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcc-cCCCceEEEEEEeCCHH-HhhHHHHHHHHHH
Confidence 2 2466666666899999999999999999998775321 01235899999999997 9999999999998
Q ss_pred cCC-CcEEEEEEecCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 596 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 596 ~g~-~~~l~~afSr~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
+.. .+++++++|++.+ ..+||++.+.+. +......+..+|+||| ++|+++|.+.|.+.
T Consensus 1089 ~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~---~l~~~~~~~~vyiCGP-~~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1089 ENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQS---ALQPPSKDLLVAICGP-PVMQRAVKADLLAL 1151 (1167)
T ss_pred HCCCCEEEEEEECCCCcccCCCCCCCCHHHHHH---hcCCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 764 4688899987543 346666543222 1111124578999999 99999999988664
|
|
| >PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes | Back alignment and domain information |
|---|
Probab=99.70 E-value=7e-17 Score=145.09 Aligned_cols=104 Identities=25% Similarity=0.444 Sum_probs=81.6
Q ss_pred EEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCC-cEEEEEEecCCC----Cccc
Q 005624 541 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL-SQLIVAFSREGP----TKEY 615 (687)
Q Consensus 541 mIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~-~~l~~afSr~~~----~k~y 615 (687)
|||+|||||||+++++++.... ..++++||||+|+.+ |++|.+||+++.+.... ++++.+ ++... .++|
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 74 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN----DNRKVTLFYGARTPE-DLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGR 74 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT----CTSEEEEEEEESSGG-GSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESS
T ss_pred CeecceeHHHHHHHHHHHHHhC----CCCCEEEEEEEcccc-cccchhHHHHHHhhcccccccccc-cccccccCCceee
Confidence 8999999999999999998763 237999999999997 99999999999988765 233333 44322 4689
Q ss_pred cchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHH
Q 005624 616 VQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHR 652 (687)
Q Consensus 616 Vq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~ 652 (687)
|++.+.+.... ......+..|||||| ++|+++|++
T Consensus 75 v~~~~~~~~~~-~~~~~~~~~v~iCGp-~~m~~~v~~ 109 (109)
T PF00175_consen 75 VTDLLLEDLLP-EKIDPDDTHVYICGP-PPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHH-HHHCTTTEEEEEEEE-HHHHHHHHH
T ss_pred hhHHHHHhhcc-cccCCCCCEEEEECC-HHHHHHhcC
Confidence 99988665433 223357899999999 999999875
|
Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A .... |
| >KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-16 Score=161.24 Aligned_cols=160 Identities=15% Similarity=0.218 Sum_probs=125.9
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEEE
Q 005624 463 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 542 (687)
Q Consensus 463 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiImI 542 (687)
--|+||--|++.. .+.+++.|++. ..|.+|.||.++..|+. +.+..+.|+|.++....+.+.||
T Consensus 99 vvRpYTPvs~~~~-~g~~~l~VK~Y---------~~G~mS~~l~~LkiGd~------ve~rGP~G~~~~~~~~~~~l~mi 162 (286)
T KOG0534|consen 99 VVRPYTPVSLDDD-KGYFDLVVKVY---------PKGKMSQHLDSLKIGDT------VEFRGPIGEFKYDPQKAKHLGMI 162 (286)
T ss_pred EEEecCCccCccc-cceEEEEEEec---------cCCcccHHHhcCCCCCE------EEEecCccceEecCCCcceEEEE
Confidence 4699999999875 57888877543 24999999999998773 45555568888876667889999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC----Cccccc
Q 005624 543 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP----TKEYVQ 617 (687)
Q Consensus 543 a~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~----~k~yVq 617 (687)
|+||||||+..++|+.+...++ ..+++|+|++++++ |.++++||+.++++.. .+.++.+.++... .++||.
T Consensus 163 AgGtGItPmlqii~~il~~~~d---~tki~lly~N~te~-DILlr~eL~~la~~~p~rf~~~y~v~~~~~~w~~~~g~It 238 (286)
T KOG0534|consen 163 AGGTGITPMLQLIRAILKDPED---TTKISLLYANKTED-DILLREELEELASKYPERFKVWYVVDQPPEIWDGSVGFIT 238 (286)
T ss_pred ecccchhhHHHHHHHHhcCCCC---CcEEEEEEecCCcc-ccchHHHHHHHHhhCcceEEEEEEEcCCcccccCccCccC
Confidence 9999999999999998875432 46899999999997 9999999999999877 7778888887652 456666
Q ss_pred hhhhcchHHHHhcc---cC-CcEEEEECCchhhHHH
Q 005624 618 HKMMEKSSDIWNML---SE-GAYLYVCGDAKSMARD 649 (687)
Q Consensus 618 ~~l~e~~~~v~~~i---~~-~~~iYvCG~a~~M~~~ 649 (687)
..+. .+.+ .. ...++|||| ++|...
T Consensus 239 ~~~i------~~~l~~~~~~~~~~liCGP-p~m~~~ 267 (286)
T KOG0534|consen 239 KDLI------KEHLPPPKEGETLVLICGP-PPMING 267 (286)
T ss_pred HHHH------HhhCCCCCCCCeEEEEECC-HHHHhH
Confidence 4443 2233 12 479999999 999873
|
|
| >COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-16 Score=164.27 Aligned_cols=164 Identities=20% Similarity=0.289 Sum_probs=122.9
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEeeCCcccCCCCCCCe
Q 005624 461 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPI 539 (687)
Q Consensus 461 ~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~Pi 539 (687)
++.|++||||++... .+++++++. -|..|.-|++ +++|. ++.|..+.|.|......++ -
T Consensus 259 ~~~~HPFTIa~s~~~--sel~FsIK~-----------LGD~Tk~l~dnLk~G~------k~~vdGPYG~F~~~~g~~~-Q 318 (438)
T COG4097 259 RMRPHPFTIACSHEG--SELRFSIKA-----------LGDFTKTLKDNLKVGT------KLEVDGPYGKFDFERGLNT-Q 318 (438)
T ss_pred cCCCCCeeeeeCCCC--ceEEEEehh-----------hhhhhHHHHHhccCCc------eEEEecCcceeecccCCcc-c
Confidence 356899999998763 478888764 3788888887 55543 5677778899988654333 8
Q ss_pred EEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchh
Q 005624 540 IMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHK 619 (687)
Q Consensus 540 ImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~ 619 (687)
|.||+|.|||||+|+++.....+.. .++.|||.||+.+ |-+|.+||+++.++.+++.+++.-| ..++|+...
T Consensus 319 VWIAGGIGITPFis~l~~l~~~~s~----~~V~L~Y~~~n~e-~~~y~~eLr~~~qkl~~~~lHiiDS---s~~g~l~~e 390 (438)
T COG4097 319 VWIAGGIGITPFISMLFTLAERKSD----PPVHLFYCSRNWE-EALYAEELRALAQKLPNVVLHIIDS---SKDGYLDQE 390 (438)
T ss_pred EEEecCcCcchHHHHHHhhcccccC----CceEEEEEecCCc-hhHHHHHHHHHHhcCCCeEEEEecC---CCCCccCHH
Confidence 9999999999999999998764422 6899999999997 8999999999999888877887433 345666433
Q ss_pred hhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 620 MMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 620 l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
..+... -......||+||| ++|++.+++.|+..
T Consensus 391 ~ler~~----~~~~~~sv~fCGP-~~m~dsL~r~l~~~ 423 (438)
T COG4097 391 DLERYP----DRPRTRSVFFCGP-IKMMDSLRRDLKKQ 423 (438)
T ss_pred Hhhccc----cccCcceEEEEcC-HHHHHHHHHHHHHc
Confidence 322210 0012348999999 99999999988753
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.9e-16 Score=185.69 Aligned_cols=170 Identities=18% Similarity=0.191 Sum_probs=124.5
Q ss_pred ChHHHHHHHcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCcee-eEEEeeC
Q 005624 450 PLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQS 527 (687)
Q Consensus 450 p~~~~l~~~~p~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~-~v~v~~~ 527 (687)
-+|||+.+.++.. .+|+|||+|.+.. .+.+.|+|+.+ |..|.||.++.+|+ .+ .|..+.|
T Consensus 29 ~pGQFv~l~~~~~~~~rp~Si~~~~~~-~g~i~~~vk~v-----------G~~T~~L~~l~~Gd------~v~~v~GP~G 90 (752)
T PRK12778 29 KPGQFVIVRVGEKGERIPLTIADADPE-KGTITLVIQEV-----------GLSTTKLCELNEGD------YITDVVGPLG 90 (752)
T ss_pred CCCeeEEEEeCCCCCeeEEEeeeeCCC-CCEEEEEEEEc-----------CchHHHHhcCCCCC------EeCeEeCCCC
Confidence 4789986544432 3589999998753 46788887543 88899999987766 34 4666678
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
+|..+.. ..+++|||+|+||||+++++++....+ .+++||||.|+.+ |++|.+||+++..+ ++++ +
T Consensus 91 ~~~~~~~-~~~~llvaGG~GiaPl~~l~~~l~~~~------~~v~l~~g~r~~~-~l~~~~el~~~~~~-----~~~~-t 156 (752)
T PRK12778 91 NPSEIEN-YGTVVCAGGGVGVAPMLPIVKALKAAG------NRVITILGGRSKE-LIILEDEMRESSDE-----VIIM-T 156 (752)
T ss_pred CCccCCC-CCeEEEEECCEeHHHHHHHHHHHHHCC------CeEEEEeccCCHH-HhhhHHHHHhhcCe-----EEEE-E
Confidence 8776533 478999999999999999999876532 4799999999997 99999999988642 2333 3
Q ss_pred cCCC--CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 608 REGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 608 r~~~--~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
.+++ .++||++.+.+... ...+...||+||| ++|++.|.+.|.+
T Consensus 157 ~dg~~g~~G~v~~~l~~~~~----~~~~~~~vy~CGP-~~M~~~v~~~l~~ 202 (752)
T PRK12778 157 DDGSYGRKGLVTDGLEEVIK----RETKVDKVFAIGP-AIMMKFVCLLTKK 202 (752)
T ss_pred CCCCCCCcccHHHHHHHHhh----cCCCCCEEEEECC-HHHHHHHHHHHHH
Confidence 3332 46788876644311 1112357999999 9999999998764
|
|
| >cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-15 Score=153.84 Aligned_cols=168 Identities=16% Similarity=0.206 Sum_probs=112.1
Q ss_pred CChHHHHHHHcCCC----cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEE
Q 005624 449 PPLGVFFAAIVPRL----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 524 (687)
Q Consensus 449 ~p~~~~l~~~~p~l----~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v 524 (687)
..+|||+.+.+|.. +.|+|||+|.|....+.+.|+|+. ..|..|.++..+...........+.|..
T Consensus 25 ~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~----------~~G~~t~~~~~~~~~~~~~~~~~v~v~G 94 (210)
T cd06186 25 WKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRA----------KKGFTTRLLRKALKSPGGGVSLKVLVEG 94 (210)
T ss_pred cCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEe----------cCChHHHHHHHHHhCcCCCceeEEEEEC
Confidence 34678876555654 679999999986434788887753 2377788777665200000112344544
Q ss_pred eeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcc-cccHHHHHHHHHcCCCcEEE
Q 005624 525 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMD-YIYEDELNNFVQSGALSQLI 603 (687)
Q Consensus 525 ~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D-~ly~del~~~~~~g~~~~l~ 603 (687)
+.|.|..+.....++||||+||||||+++++++............++.|+|++|+.+ | ..|.+||.+..+-....+++
T Consensus 95 P~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~-~~~~~~~~l~~~~~~~~~~~~~ 173 (210)
T cd06186 95 PYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE-DLEWFLDELRAAQELEVDGEIE 173 (210)
T ss_pred CCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHH-HhHHHHHHHHhhhhccCCceEE
Confidence 567776444456789999999999999999999876532111236899999999997 6 57999998611111110233
Q ss_pred EEEecCCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 604 VAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 604 ~afSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+..++ +|+||| .+|.++++....+
T Consensus 174 i~~T~----------------------------v~~CGp-~~~~~~~~~~~~~ 197 (210)
T cd06186 174 IYVTR----------------------------VVVCGP-PGLVDDVRNAVAK 197 (210)
T ss_pred EEEee----------------------------EEEECc-hhhccHHHHHHhh
Confidence 33332 999999 8999999987765
|
ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation. |
| >TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=139.99 Aligned_cols=92 Identities=23% Similarity=0.360 Sum_probs=71.5
Q ss_pred EEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHh
Q 005624 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188 (687)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~ 188 (687)
|+|+|+|||||+|++++.- .+..+.+++.++ ..+ .++.+++ ++|||+|+.|+.+.+|++.+.+
T Consensus 1 IvY~S~TGNte~fv~~lg~---------~~~~i~~~~~d~------~~~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~n 63 (125)
T TIGR00333 1 IYFSSKTGNVQRFVEKLGF---------QHIRIPVDETDD------IHV-DQEFVLI-TYTGGFGAVPKQTISFLNKKHN 63 (125)
T ss_pred CEEEcccccHHHHHHHcCC---------CcEEeecCCcch------hhc-CCCEEEE-ecCCCCCcCCHHHHHHHHhhhh
Confidence 6899999999999554421 123345544332 123 5666655 9999999999999999888762
Q ss_pred hcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHH
Q 005624 189 QKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILAN 227 (687)
Q Consensus 189 ~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~ 227 (687)
+.+||||+||++| ++||.+++++.+++..
T Consensus 64 ----------~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 64 ----------LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred ----------cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 7899999999999 9999999999998865
|
Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised. |
| >cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-16 Score=158.23 Aligned_cols=157 Identities=14% Similarity=0.147 Sum_probs=105.5
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEEE
Q 005624 463 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 542 (687)
Q Consensus 463 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiImI 542 (687)
..|.|||+|.+. ..++++|+|+++ ...|.+|+||.++.+|+ .+.+..+.|.|.++. ...+++||
T Consensus 63 ~~R~YSi~~~~~-~~~~l~~~v~~~--------~~~G~~s~~l~~l~~Gd------~v~v~gP~G~~~~~~-~~~~~vli 126 (235)
T cd06193 63 VMRTYTVRRFDP-EAGELDIDFVLH--------GDEGPASRWAASAQPGD------TLGIAGPGGSFLPPP-DADWYLLA 126 (235)
T ss_pred cCcccceeEEcC-CCCEEEEEEEeC--------CCCCchHHHHhhCCCCC------EEEEECCCCCCCCCC-CcceEEEE
Confidence 359999999875 347788877532 11388999999887766 456666788888764 35789999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhc
Q 005624 543 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 622 (687)
Q Consensus 543 a~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~e 622 (687)
|+||||||+++++++.... .++++|||+|+++ |.++.+++. ..+++.+.++++. .......+..
T Consensus 127 a~GtGi~p~~~il~~~~~~-------~~~~~~~~~~~~~-d~~~l~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~ 190 (235)
T cd06193 127 GDETALPAIAAILEELPAD-------ARGTALIEVPDAA-DEQPLPAPA-------GVEVTWLHRGGAE-AGELALLAVR 190 (235)
T ss_pred eccchHHHHHHHHHhCCCC-------CeEEEEEEECCHH-HccccCCCC-------CcEEEEEeCCCCC-cchhHHHHHh
Confidence 9999999999999976421 4799999999985 554433321 2355555443332 1111100000
Q ss_pred chHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 623 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 623 ~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
. .........+|+||| ++|++.+++.|.+
T Consensus 191 ---~-~~~~~~~~~vyicGp-~~mv~~v~~~l~~ 219 (235)
T cd06193 191 ---A-LAPPAGDGYVWIAGE-AGAVRALRRHLRE 219 (235)
T ss_pred ---c-ccCCCCCeEEEEEcc-HHHHHHHHHHHHH
Confidence 0 001134579999999 8999999887764
|
Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy |
| >PRK02551 flavoprotein NrdI; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.5e-15 Score=140.84 Aligned_cols=141 Identities=20% Similarity=0.272 Sum_probs=92.9
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCC-CCCCCCchHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY-GDGEPTDNAARF 182 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTy-G~G~~pdna~~F 182 (687)
|+++.|+|.|+||||++|+++|...+.+......+..+++.++..++. ..+.....+|+++||| |.|++|+++.+
T Consensus 1 ~~~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~~~---~~~~~~~p~vli~pTY~~gG~~~~~~~~- 76 (154)
T PRK02551 1 MKTITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHETT---DFFPETEPFVAFLPTYLEGGNGIDNGDV- 76 (154)
T ss_pred CCceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCccc---cccccCCCEEEEEeeecCCCCCcccCcc-
Confidence 467999999999999999999998775421011223466665543211 1245667899999999 88877766544
Q ss_pred HHHHHhhc---CCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHH
Q 005624 183 YKWFTEQK---EGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELV 256 (687)
Q Consensus 183 ~~~L~~~~---~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l 256 (687)
+|+.+.. .......++.+||||+||++| ++||.+|+++++. .+..-++.. +-.++.+|++.-.+.|
T Consensus 77 -~~vp~~v~dFL~~~~N~~~~~gVigsGNrNfg~~F~~aa~~ia~~---~~vP~L~~f----El~GT~~Dv~~v~~~~ 146 (154)
T PRK02551 77 -EILTTPLGDFIAYHDNAKRCLGIIGSGNRNFNNQYCLTAKQYAKR---FGFPMLADF----ELRGTPSDIERIAAII 146 (154)
T ss_pred -ccchHHHHHHHcchhhhhheEEEEeecccHHHHHHHHHHHHHHHH---cCCCEEEEe----eccCCHHHHHHHHHHH
Confidence 3222110 001123678899999999999 8999999999986 465555443 2335566665544443
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.2e-15 Score=177.57 Aligned_cols=182 Identities=14% Similarity=0.127 Sum_probs=122.3
Q ss_pred CChHHHHHHHcC-CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCcee-eEEEee
Q 005624 449 PPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p-~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~-~v~v~~ 526 (687)
..+|||+.+..+ ....|+|||+|.+.. .+.+.|+|+.+ |..|.+|.++.+|+. + .|..+.
T Consensus 677 ~~PGQFv~L~~~~~ge~rP~SIas~~~~-~g~i~l~Vk~v-----------G~~T~~L~~lk~Gd~------l~~I~GPl 738 (944)
T PRK12779 677 AQAGQFVRVLPWEKGELIPLTLADWDAE-KGTIDLVVQGM-----------GTSSLEINRMAIGDA------FSGIAGPL 738 (944)
T ss_pred CCCCceEEEEeCCCCCEEeEEccCCCCC-CCEEEEEEEee-----------ccHHHHHhcCCCcCE------EeeeecCC
Confidence 347999864432 223499999998743 46788877533 777888988888763 4 255566
Q ss_pred CCcc-cCC-CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHH---HHHHHHcCC-Cc
Q 005624 527 SNFK-LPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDE---LNNFVQSGA-LS 600 (687)
Q Consensus 527 ~~F~-lp~-~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~de---l~~~~~~g~-~~ 600 (687)
|+|. ++. ...++++|||+|+||||+++++++....+ .+++||||+|+++ |.+|.++ |+++++... ..
T Consensus 739 G~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g------~~V~li~G~Rs~e-dl~~~del~~L~~la~~~~~~~ 811 (944)
T PRK12779 739 GRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG------NHVTLISGFRAKE-FLFWTGDDERVGKLKAEFGDQL 811 (944)
T ss_pred CCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC------CCEEEEEEeCCHH-HhhhHHHHHHHHHHHHHcCCCe
Confidence 7664 443 23468999999999999999999876532 4799999999986 8888766 455665433 33
Q ss_pred EEEEEEecCCC--CccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 601 QLIVAFSREGP--TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 601 ~l~~afSr~~~--~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
+++++ +.++. .+++|++.+.+........- .....||+||| ++|++.|.+.|.+.
T Consensus 812 ~v~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP-~~Mmkav~~~l~~~ 869 (944)
T PRK12779 812 DVIYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGP-PLMMRAVSDLTKPY 869 (944)
T ss_pred EEEEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 44444 44432 46788876543211100000 01357999999 99999999977543
|
|
| >PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.8e-14 Score=155.65 Aligned_cols=146 Identities=15% Similarity=0.126 Sum_probs=113.2
Q ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHH
Q 005624 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (687)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~ 181 (687)
..+++|+|+|+|+|||||++|+.|++.+.+...++.++++++.+.+.+ ++..++.+++.+||++|||+.|.+| .+..
T Consensus 245 ~~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~--~i~~~~~~~d~ii~GspT~~~~~~~-~~~~ 321 (394)
T PRK11921 245 YQENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKN--DIITEVFKSKAILVGSSTINRGILS-STAA 321 (394)
T ss_pred CCcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHH--HHHHHHHhCCEEEEECCCcCccccH-HHHH
Confidence 356889999999999999999999999973222356788999887653 2334566799999999999888775 5999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCC--CcHHhHHHHHHHHHHH
Q 005624 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPE 259 (687)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~ 259 (687)
|++++... .++++++++|| +|.|+|.+.+.+.++|+++|++.+.+.....-.. ...+.+.+|.++|.+.
T Consensus 322 ~l~~l~~~-----~~~~K~~a~FG----sygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~g~~la~~ 392 (394)
T PRK11921 322 ILEEIKGL-----GFKNKKAAAFG----SYGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEALDRCRSFGENFAES 392 (394)
T ss_pred HHHHhhcc-----CcCCCEEEEEe----cCCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 99998764 48899999999 4899999999999999999999887643332221 2234557777776543
|
|
| >PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=129.39 Aligned_cols=122 Identities=21% Similarity=0.362 Sum_probs=88.4
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCC----CCCCchHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGD----GEPTDNAA 180 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~----G~~pdna~ 180 (687)
+.+.|+|.|.||||++||++|.... ..+++++.+ .+..+..+++++||||+ |+.|+...
T Consensus 1 ~~~~I~Y~S~TGNt~~f~~kl~~~~---------~~i~i~~~~--------~~~~~~~~~lv~PTy~~g~~~G~vP~~v~ 63 (134)
T PRK03600 1 MMMLVYFSSKTGNTHRFVQKLGLPA---------TRIPINERE--------RLEVDEPYILITPTYGGGGTAGAVPKQVI 63 (134)
T ss_pred CcEEEEEECCChhHHHHHHHhCCcc---------eEEecCCCc--------cccCCCCEEEEEeccCCCCcCCcccHHHH
Confidence 3578999999999999998885531 234554321 24456678999999999 69999999
Q ss_pred HHHHHHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccccCCCCc---HHhHHHHHHHH
Q 005624 181 RFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCI---EDDFSAWRELV 256 (687)
Q Consensus 181 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~---e~~f~~W~~~l 256 (687)
+|++...+ ....++|||+||++| ++||.+++.+.+++. ...++.. +..+. .+.+.+|.+++
T Consensus 64 ~Fl~~~~n--------~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~---vp~l~k~----El~gt~~Dv~~~~~~~~~~ 128 (134)
T PRK03600 64 RFLNDEHN--------RKLLRGVIASGNRNFGDAFALAGDVISAKCQ---VPLLYRF----ELSGTNEDVENVRKGVEEF 128 (134)
T ss_pred HHHhcccc--------CCcEEEEEEecCchHHHHHHHHHHHHHHHhC---CCeEEEE----ecCCCHHHHHHHHHHHHHH
Confidence 99877443 246899999999999 899999999999875 2222222 22222 34567787777
Q ss_pred HH
Q 005624 257 WP 258 (687)
Q Consensus 257 ~~ 258 (687)
|.
T Consensus 129 ~~ 130 (134)
T PRK03600 129 WQ 130 (134)
T ss_pred Hh
Confidence 65
|
|
| >PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-13 Score=155.18 Aligned_cols=146 Identities=12% Similarity=0.081 Sum_probs=113.3
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHH
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F 182 (687)
.+++|+|+|+|+|||||++|+.|++.+++.+.++.+++.++++.+.++ ...++..++.+||++|||++|.+| .+..|
T Consensus 250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~--i~~~~~~ad~vilGspT~~~~~~p-~~~~f 326 (479)
T PRK05452 250 QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNE--ILTNVFRSKGVLVGSSTMNNVMMP-KIAGL 326 (479)
T ss_pred CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHH--HHhHHhhCCEEEEECCccCCcchH-HHHHH
Confidence 467899999999999999999999999877544567889998877532 233445689999999999777766 69999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCC--CCcHHhHHHHHHHHHHHH
Q 005624 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDD--QCIEDDFSAWRELVWPEL 260 (687)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~--~~~e~~f~~W~~~l~~~L 260 (687)
++.+... .++|+++++|| +|.|+|.+.+.+.++|+.+|++.+.+ ...... ....+.+.++.+.|.+.+
T Consensus 327 l~~l~~~-----~l~gK~~~vFG----Sygw~g~a~~~~~~~l~~~g~~~~~~-l~~~~~P~ee~~~~~~~~g~~la~~~ 396 (479)
T PRK05452 327 LEEITGL-----RFRNKRASAFG----SHGWSGGAVDRLSTRLQDAGFEMSLS-LKAKWRPDQDALELCREHGREIARQW 396 (479)
T ss_pred HHHhhcc-----CcCCCEEEEEE----CCCcCcHHHHHHHHHHHHCCCEEecc-EEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 9988754 48999999999 57899999999999999999997532 222221 123445567777776655
Q ss_pred H
Q 005624 261 D 261 (687)
Q Consensus 261 ~ 261 (687)
.
T Consensus 397 ~ 397 (479)
T PRK05452 397 A 397 (479)
T ss_pred h
Confidence 4
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6e-14 Score=170.48 Aligned_cols=169 Identities=15% Similarity=0.176 Sum_probs=117.5
Q ss_pred ChHHHHHHHcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhh-cccCCCCCCCCCcee-eEEEee
Q 005624 450 PLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWM-KNSLPMEKSNDCSWA-PIFVRQ 526 (687)
Q Consensus 450 p~~~~l~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L-~~~~~~~~~~~~~~~-~v~v~~ 526 (687)
-+|||+.+.++. ...|+|||++.+.. .+.+.|.++. .|..|.|| .++.+|+. + .+..+.
T Consensus 29 ~PGQFV~l~~~~~~errplSIa~~~~~-~g~i~l~vk~-----------vG~~T~~L~~~lk~Gd~------l~~v~GPl 90 (1006)
T PRK12775 29 EPGHFVMLRLYEGAERIPLTVADFDRK-KGTITMVVQA-----------LGKTTREMMTKFKAGDT------FEDFVGPL 90 (1006)
T ss_pred CCCeeEEEEeCCCCeeEEEEecCcCCC-CCEEEEEEEe-----------cCcHHHHHHhcCCCCCE------EeeeecCC
Confidence 479998654332 23589999997642 4667776643 38889998 57777653 3 344455
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|.|.... ..++++|||+|+||||+++++++....+ .+++++||+|+++ +.+|.+||+.+.. +++++
T Consensus 91 G~~~~~~-~~~~vllVaGGiGIAPl~s~~r~l~~~g------~~v~li~g~R~~~-~l~~~del~~~~~-----~~~v~- 156 (1006)
T PRK12775 91 GLPQHID-KAGHVVLVGGGLGVAPVYPQLRAFKEAG------ARTTGIIGFRNKD-LVFWEDKFGKYCD-----DLIVC- 156 (1006)
T ss_pred CCCCCCC-CCCeEEEEEEhHHHHHHHHHHHHHHhCC------CcEEEEEeCCChH-HcccHHHHHhhcC-----cEEEE-
Confidence 6554332 2468999999999999999999865432 4689999999996 8999999987653 23333
Q ss_pred ecCCC--CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~--~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+.+++ .+++|++.+.+... . .....||+||| ++|++.|.+.+.+
T Consensus 157 tddgs~G~~G~vt~~l~~~l~----~-~~~d~vy~CGP-~~Mm~av~~~~~~ 202 (1006)
T PRK12775 157 TDDGSYGKPGFVTAALKEVCE----K-DKPDLVVAIGP-LPMMNACVETTRP 202 (1006)
T ss_pred ECCCCCCCCCChHHHHHHHhc----c-CCCCEEEEECC-HHHHHHHHHHHHH
Confidence 33332 46788876654211 0 12347999999 8999999997754
|
|
| >PRK05569 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-13 Score=126.90 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=94.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCC-chHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARF 182 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p-dna~~F 182 (687)
|++++|+|+|+||||+.+|+.|++.+.+.+ ..+++.++.+.+. .++.+++.+||++|||+.|.+| +.+..|
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~g--~~v~~~~~~~~~~------~~~~~~d~iilgsPty~~~~~~~~~~~~~ 72 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEAG--AEVTIKHVADAKV------EDVLEADAVAFGSPSMDNNNIEQEEMAPF 72 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhCC--CeEEEEECCcCCH------HHHhhCCEEEEECCCcCCCcCChHHHHHH
Confidence 468999999999999999999999998765 4567888887764 3577899999999999877764 789999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005624 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
++.|... .++++++++||.+...+ +.+.+.+.+.|++.|++.+.+
T Consensus 73 ~~~l~~~-----~~~~K~v~~f~t~g~~~---~~~~~~~~~~l~~~g~~~~~~ 117 (141)
T PRK05569 73 LDQFKLT-----PNENKKCILFGSYGWDN---GEFMKLWKDRMKDYGFNVIGD 117 (141)
T ss_pred HHHhhcc-----CcCCCEEEEEeCCCCCC---CcHHHHHHHHHHHCCCeEeee
Confidence 9998653 36899999999753332 456788889999999987655
|
|
| >PRK05568 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-13 Score=127.35 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=92.4
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCC-chHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARF 182 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p-dna~~F 182 (687)
|++++|+|+|+||||+.+|+.|++.+.+.+ ..++++++.+.+. .++..++.+||++|||+.|.+| ..+..|
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~g--~~v~~~~~~~~~~------~~~~~~d~iilgsp~y~~~~~~~~~~~~f 72 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKENG--AEVKLLNVSEASV------DDVKGADVVALGSPAMGDEVLEEGEMEPF 72 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHCC--CeEEEEECCCCCH------HHHHhCCEEEEECCccCcccccchhHHHH
Confidence 568999999999999999999999998765 4578888887764 3578899999999999888864 789999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEecc-CCchHHHHHHHHHHHHHHHHcCCccccc
Q 005624 183 YKWFTEQKEGGEWLQKLKYGVFGLG-NRQYEHFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlG-ds~Y~~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
++.+.. .++++++++||.. .+. ..+.+.+.+.|+++|++.+.+
T Consensus 73 ~~~~~~------~~~~k~~~~f~t~G~~~----~~~~~~~~~~l~~~g~~~~~~ 116 (142)
T PRK05568 73 VESISS------LVKGKKLVLFGSYGWGD----GEWMRDWVERMEGYGANLVNE 116 (142)
T ss_pred HHHhhh------hhCCCEEEEEEccCCCC----ChHHHHHHHHHHHCCCEEeCC
Confidence 988753 3689999999972 211 235688888899999887765
|
|
| >PLN02292 ferric-chelate reductase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=143.06 Aligned_cols=176 Identities=16% Similarity=0.155 Sum_probs=110.9
Q ss_pred hHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeC
Q 005624 451 LGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 527 (687)
Q Consensus 451 ~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~ 527 (687)
+||++-..+|. .+.|+|||+|+|..+++.++++|+. .|..|++|.+....++.....++.|..+.|
T Consensus 354 PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~-----------~G~~T~~L~~~l~~gd~i~~~~V~VeGPYG 422 (702)
T PLN02292 354 PTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKS-----------QGKWSTKLYHMLSSSDQIDRLAVSVEGPYG 422 (702)
T ss_pred CCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEc-----------CCchhHHHHHhCCCCCccccceEEEECCcc
Confidence 45544333353 4679999999985445778877652 377788887764433221111233444556
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeccCCcccccHHHHHH-------HHHcCCC
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNN-------FVQSGAL 599 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~-~~~~~~~LffG~R~~~~D~ly~del~~-------~~~~g~~ 599 (687)
.+..+.....+++|||+|+||||+++++++..+..... ....++.|+|+.|+++ |.++.|++.. +.++ ..
T Consensus 423 ~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~-Dl~~ld~l~~e~~~~~~l~~~-~~ 500 (702)
T PLN02292 423 PASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSS-DLSMLDLILPTSGLETELSSF-ID 500 (702)
T ss_pred CCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhHHHHHHHhhhhHHHHhhc-CC
Confidence 66544333468999999999999999999987653211 1125899999999997 8888765543 2233 34
Q ss_pred cEEEEEEecCCCCc-cccchhhhcchHHHHhcc-----cCCcEEEEECCc
Q 005624 600 SQLIVAFSREGPTK-EYVQHKMMEKSSDIWNML-----SEGAYLYVCGDA 643 (687)
Q Consensus 600 ~~l~~afSr~~~~k-~yVq~~l~e~~~~v~~~i-----~~~~~iYvCG~a 643 (687)
.++.+.++|+.+.+ .|-++ ..+.+.+.+ .+...+.+|||.
T Consensus 501 ~~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~ 546 (702)
T PLN02292 501 IQIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPN 546 (702)
T ss_pred ceEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCC
Confidence 47788888876432 22222 222332322 256789999994
|
|
| >PRK06242 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-11 Score=116.81 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=86.9
Q ss_pred ceEEEEEecC-cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 105 QKVTIFFGTQ-TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 105 ~~v~I~YgSq-tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|+++|+|.|+ ||||+.+|+.|++.+. ++++++.+... .++.+++.+||++||| .|.+|+.+..|+
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~-------~~~~~i~~~~~------~~~~~~d~ii~g~pvy-~~~~~~~~~~fl 66 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLD-------AEVIDPGDVNP------EDLSEYDLIGFGSGIY-FGKFHKSLLKLI 66 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcC-------cEEecHHHCCc------ccHhHCCEEEEeCchh-cCCcCHHHHHHH
Confidence 5789999999 8999999999999883 25666665443 3467889999999999 799999999998
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccc
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPV 236 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~ 236 (687)
+.+.. +.++++++||.+......+ .+.+.+.|+.+|++.+...
T Consensus 67 ~~~~~-------~~~k~~~~f~t~g~~~~~~---~~~l~~~l~~~g~~~~~~~ 109 (150)
T PRK06242 67 EKLPP-------VSGKKAFIFSTSGLPFLKY---HKALKKKLKEKGFEIVGEF 109 (150)
T ss_pred Hhhhh-------hcCCeEEEEECCCCCcchH---HHHHHHHHHHCCCEEEEEE
Confidence 87752 5789999999876654332 7899999999999977653
|
|
| >PLN02844 oxidoreductase/ferric-chelate reductase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-11 Score=143.02 Aligned_cols=182 Identities=13% Similarity=0.115 Sum_probs=114.5
Q ss_pred CChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCC----CC-CCCCCcee
Q 005624 449 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP----ME-KSNDCSWA 520 (687)
Q Consensus 449 ~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~----~~-~~~~~~~~ 520 (687)
..+|||+..-+|. .+.|+|||+|+|..+++.+.++|+.. |-.|+.|.+... .+ ....+..+
T Consensus 339 f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~-----------gG~T~~L~~~i~~~l~~g~~~~~~~~v 407 (722)
T PLN02844 339 YAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCE-----------GGWTNSLYNKIQAELDSETNQMNCIPV 407 (722)
T ss_pred cCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeC-----------CCchHHHHHHHHhhccCCCCcccceEE
Confidence 3467776544454 35799999998865556777776532 333555543321 11 11111134
Q ss_pred eEEEeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhc-CCCCCcEEEEEeeccCCcccccHHHHHH-----HH
Q 005624 521 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNN-----FV 594 (687)
Q Consensus 521 ~v~v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~-~~~~~~~~LffG~R~~~~D~ly~del~~-----~~ 594 (687)
.|..+.|.|.++.....+++|||+|||||||++++++.....+. .....++.|+|++|+.+ |..|.+++.. +.
T Consensus 408 ~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~-dL~~~del~~~l~~~~~ 486 (722)
T PLN02844 408 AIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQ-DICLLNPISSLLLNQSS 486 (722)
T ss_pred EEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhhHHHHHHHhHHhHH
Confidence 44445677765544457899999999999999999998764321 11235799999999997 9999999863 22
Q ss_pred HcCCCcEEEEEEecCCCCccccchhhhcc--hHHHHhcccCCcEEEEECCch
Q 005624 595 QSGALSQLIVAFSREGPTKEYVQHKMMEK--SSDIWNMLSEGAYLYVCGDAK 644 (687)
Q Consensus 595 ~~g~~~~l~~afSr~~~~k~yVq~~l~e~--~~~v~~~i~~~~~iYvCG~a~ 644 (687)
+. ...+++...+|+......+++.+..- .+.++ +-.+...+.+||+..
T Consensus 487 ~~-~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~-~~~~~~~~~i~G~~~ 536 (722)
T PLN02844 487 NQ-LNLKLKVFVTQEEKPNATLRELLNQFSQVQTVN-FSTKCSRYAIHGLES 536 (722)
T ss_pred Hh-cCceEEEEECCCCCCCCchhhHhhccchhhhcC-CCCCCCceEEeCCCc
Confidence 22 24477777899865544555555441 12222 223557899999943
|
|
| >PLN02631 ferric-chelate reductase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-11 Score=142.69 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=102.9
Q ss_pred CChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCC-CCCCCCCceeeEEE
Q 005624 449 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP-MEKSNDCSWAPIFV 524 (687)
Q Consensus 449 ~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~-~~~~~~~~~~~v~v 524 (687)
.-+||++...+|. .+.|+|||+|+|...++.++++|+. .|..|++|.+... +++ ...+.+..
T Consensus 335 ~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~g~---~i~V~VeG 400 (699)
T PLN02631 335 YTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSSID---SLEVSTEG 400 (699)
T ss_pred CCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcCCC---eeEEEEEC
Confidence 3467766444454 4669999999986555778887752 4778999977443 221 11233444
Q ss_pred eeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeccCCcccccHHHHHHH------HHcC
Q 005624 525 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNF------VQSG 597 (687)
Q Consensus 525 ~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~-~~~~~~~LffG~R~~~~D~ly~del~~~------~~~g 597 (687)
+.|.|..+.....++||||+|+||+|+++++++.......+ .+.+++.|+||.|+.+ |.+|.||++.+ .+ .
T Consensus 401 PYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~-dL~f~deL~~l~~~~~~l~-~ 478 (699)
T PLN02631 401 PYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH-DLAFLDLIFPLDISVSDIS-R 478 (699)
T ss_pred CCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH-HhhhHHHHhhhccchhhhh-c
Confidence 56766655444568999999999999999999987653221 1235899999999997 99999999863 22 2
Q ss_pred CCcEEEEEEecCCC
Q 005624 598 ALSQLIVAFSREGP 611 (687)
Q Consensus 598 ~~~~l~~afSr~~~ 611 (687)
...++....+|+++
T Consensus 479 ~ni~i~iyVTR~~~ 492 (699)
T PLN02631 479 LNLRIEAYITREDK 492 (699)
T ss_pred CceEEEEEEcCCCC
Confidence 35578888899754
|
|
| >PRK11104 hemG protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-10 Score=111.64 Aligned_cols=87 Identities=17% Similarity=0.228 Sum_probs=74.3
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
|+++|+|+|.||||+++|+.|++.+.. + ..++++++++... .++..++.+||++||| .|.++..+..|++
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g--~~v~~~~~~~~~~------~~l~~yD~vIlGspi~-~G~~~~~~~~fl~ 70 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE-G--IQCDVVNLHRIEE------PDLSDYDRVVIGASIR-YGHFHSALYKFVK 70 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC-C--CeEEEEEhhhcCc------cCHHHCCEEEEECccc-cCCcCHHHHHHHH
Confidence 579999999999999999999999975 4 4567888877653 2477899999999999 8999999999987
Q ss_pred HHHhhcCCCCCcCCceEEEEecc
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLG 207 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlG 207 (687)
.+.. .|+++++++|++|
T Consensus 71 ~~~~------~l~~K~v~~F~v~ 87 (177)
T PRK11104 71 KHAT------QLNQMPSAFFSVN 87 (177)
T ss_pred HHHH------HhCCCeEEEEEec
Confidence 6653 4899999999988
|
|
| >PRK07116 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=9e-10 Score=106.49 Aligned_cols=133 Identities=14% Similarity=0.187 Sum_probs=87.0
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcc-----------------------hhHHHhccCC
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE-----------------------DEYEEKLKKE 160 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~-----------------------~~~~~~l~~~ 160 (687)
||+++|+|.|.||||+.+|+.|++.+.... .++.+...|...+ .....++..+
T Consensus 2 m~k~lIvY~S~tGnT~~iA~~Ia~~l~~d~----~~i~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 77 (160)
T PRK07116 2 NNKTLVAYFSATGTTKKVAEKLAEVTGADL----FEIKPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEY 77 (160)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhcCCe----EEEeeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhC
Confidence 688999999999999999999999986421 2443333332110 0012356788
Q ss_pred CeEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchHHHHHHHHHHHHHHHHcCCccccccccc
Q 005624 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLG 239 (687)
Q Consensus 161 ~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~g 239 (687)
+.++|++|+| .|.+|..+..|++.+ .+.++++++|+. |.+.+ +.+...+.+.+ +...+.+ |..
T Consensus 78 D~Iiig~Pv~-~~~~p~~v~~fl~~~--------~l~~k~v~~f~T~g~~~~---g~~~~~~~~~~---~~~~~~~-~~~ 141 (160)
T PRK07116 78 DVIFLGFPIW-WYVAPRIINTFLESY--------DFSGKTVIPFATSGGSGI---GNAEKELKKSY---PDANWKE-GRL 141 (160)
T ss_pred CEEEEECChh-ccccHHHHHHHHHhc--------CCCCCEEEEEEeCCCCCc---CcHHHHHHHHC---CcCcccc-Cee
Confidence 9999999999 588999988887643 378899999998 66654 33444555543 3222222 111
Q ss_pred cCCCCcHHhHHHHHHHH
Q 005624 240 DDDQCIEDDFSAWRELV 256 (687)
Q Consensus 240 D~~~~~e~~f~~W~~~l 256 (687)
-.....++++++|.+++
T Consensus 142 ~~~~~~~~~i~~wl~~~ 158 (160)
T PRK07116 142 LNGGASKEEIKEWINKL 158 (160)
T ss_pred ecCCCcHHHHHHHHHHc
Confidence 11112366799998764
|
|
| >PRK03767 NAD(P)H:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-09 Score=108.05 Aligned_cols=126 Identities=18% Similarity=0.121 Sum_probs=94.1
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHh-hcCCCeeEEecCCCCCCcchh--------------HHHhccCCCeEEEEee
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEEDE--------------YEEKLKKENIVFFFLA 168 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~~~--------------~~~~l~~~~~vi~~~s 168 (687)
|++|+|+|+|.+|||+++|+.+++.+.+ .+ ..++++++.+..+++.. -.+++..++.+||++|
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G--~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP 78 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAG--AEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTP 78 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCC--cEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEec
Confidence 4689999999999999999999999986 54 56788888543321110 0356788999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
|| .|.+|..++.|++++..... ...+.++.+++|+........--...+.+...|..+|..-+
T Consensus 79 ty-~g~~~~~lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv 141 (200)
T PRK03767 79 TR-FGNMAGQMRNFLDQTGGLWA-KGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIV 141 (200)
T ss_pred cc-CCCchHHHHHHHHHhccccc-cCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEe
Confidence 99 99999999999999865321 23588999999997654432333445666667778888644
|
|
| >TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-09 Score=107.32 Aligned_cols=126 Identities=19% Similarity=0.100 Sum_probs=95.1
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchh------------H--HHhccCCCeEEEEeeCC
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDE------------Y--EEKLKKENIVFFFLATY 170 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~------------~--~~~l~~~~~vi~~~sTy 170 (687)
.+|+|+|+|++|+|+++|+.+++.+++.. +..++++++.+...++.. . .+++.+++.+||++|||
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~~-g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty 79 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAREVD-GAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTR 79 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHhcC-CCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEeccc
Confidence 36999999999999999999999997641 255778887654321100 0 14577899999999999
Q ss_pred CCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 171 GDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
.|.++..++.|++++..... ...+.++..++|+.+.........+...+...|..+|..-+
T Consensus 80 -~g~~~~~lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv 140 (197)
T TIGR01755 80 -FGNMASQMRNFLDQTGGLWA-SGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIV 140 (197)
T ss_pred -ccCccHHHHHHHHhcccccc-ccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEe
Confidence 89999999999999875321 22588999999998765555555666777777788888644
|
This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected. |
| >PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.8e-10 Score=101.91 Aligned_cols=115 Identities=26% Similarity=0.398 Sum_probs=71.2
Q ss_pred EEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCC----CCchHHHHHH
Q 005624 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGE----PTDNAARFYK 184 (687)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~----~pdna~~F~~ 184 (687)
|+|.|.||||++|+++|...+... . +.+.+.+. .+.-...+|++++|||.|+ .|+...+|++
T Consensus 1 I~Y~S~tGNt~rFv~kL~~~~~~~------~-i~~~~~~~-------~~~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~ 66 (122)
T PF07972_consen 1 IYYSSLTGNTRRFVEKLGLYAPAI------R-IPIREISP-------DLEVDEPFVLITPTYGFGENDGGVPKQVIRFLE 66 (122)
T ss_dssp EEE--SSSHHHHHHHHH-S--SEE------E-E-SSCTTS-------TS--SS-EEEEEE-BTTTBSSTSS-HHHHHHHH
T ss_pred CEEECCCcCHHHHHHHHcccchhc------c-cccccccc-------cccCCCCEEEEecccCCCCCCCCCCHHHHHHHH
Confidence 799999999999999887654321 1 22222111 1334466899999999999 9999999988
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHH
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 252 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W 252 (687)
+-.+. ....+|+|.||++| +.||.+|+++.+.+ +...++.. +-.+.++|++.-
T Consensus 67 ~~~N~--------~~l~GVigSGNrNfg~~f~~aa~~ia~ky---~VPll~kf----El~Gt~~Dv~~v 120 (122)
T PF07972_consen 67 NPDNR--------KLLRGVIGSGNRNFGDNFCLAADKIAEKY---GVPLLYKF----ELSGTPEDVERV 120 (122)
T ss_dssp SHHHG--------GGEEEEEEEE-GGGGGGTTHHHHHHHHHH---T--EEEEE----ETT--HHHHHHH
T ss_pred HHHHH--------hhheeEEecCCcHHHHHHHHHHHHHHHHc---CCCEEEEE----ecCCCHHHHHHH
Confidence 66542 35568999999999 89999999999865 54444433 233556665543
|
The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A. |
| >COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.4e-09 Score=94.17 Aligned_cols=124 Identities=19% Similarity=0.329 Sum_probs=85.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCC----CCCchHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDG----EPTDNAA 180 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G----~~pdna~ 180 (687)
+.+.|+|.|.||||.+|.++|. +. ...+.+...++ .+.-...+|+++||||.| +.|....
T Consensus 1 ~~~~v~f~S~SgNt~RFv~kL~--~~----~~~I~~~~~~~----------~~~v~epyvlitpTyg~G~~~~~Vp~~vi 64 (141)
T COG1780 1 MMLLVYFSSLSGNTHRFVEKLG--LP----AVRIPLNREED----------PIEVDEPYVLITPTYGGGGTVGAVPKQVI 64 (141)
T ss_pred CceEEEEEecCccHHHHHHHhC--CC----ceecccccccC----------CccCCCCeEEEeccccCCCccCccCHHHH
Confidence 3578999999999999999887 11 11112211111 123345689999999999 9999988
Q ss_pred HHHHHHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHh---HHHHHHHH
Q 005624 181 RFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDD---FSAWRELV 256 (687)
Q Consensus 181 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~---f~~W~~~l 256 (687)
+|+..-. ...+..+|.|.||++| +.||.+|+.+.+++ |-.-++..-+ .++.+| +.+|..++
T Consensus 65 ~FLn~~~--------Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k~---~vPlLy~FEL----~GT~~Dv~~v~~~v~~~ 129 (141)
T COG1780 65 RFLNNEH--------NRALCRGVIASGNRNFGDNFALAGDVISAKC---GVPLLYRFEL----LGTAEDVAAVRKGVTEF 129 (141)
T ss_pred HHhcccc--------chhheEEEEecCCccHHHHHHHHHHHHHHHh---CCCEEEEEec----cCCHHHHHHHHHHHHHH
Confidence 7764322 3457789999999999 89999999999864 5555544322 234444 66777777
Q ss_pred HHH
Q 005624 257 WPE 259 (687)
Q Consensus 257 ~~~ 259 (687)
|+.
T Consensus 130 ~~~ 132 (141)
T COG1780 130 WKR 132 (141)
T ss_pred HHh
Confidence 763
|
|
| >PF12724 Flavodoxin_5: Flavodoxin domain | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-08 Score=95.67 Aligned_cols=86 Identities=22% Similarity=0.355 Sum_probs=70.4
Q ss_pred EEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHH
Q 005624 108 TIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (687)
Q Consensus 108 ~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~ 187 (687)
+|+|.|.||||+++|+.|++.|.+.+ ..+|+.+...+ ..++..++.+||++|+| .|.++..+.+|++.+.
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~~~-----~~v~~~~~~~~----~~~~~~yD~vi~gspiy-~g~~~~~~~~fi~~~~ 70 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGEEG-----ELVDLEKVEED----EPDLSDYDAVIFGSPIY-AGRIPGEMREFIKKNK 70 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhhhc-----cEEEHHhhhhc----ccccccCCEEEEEEEEE-CCcCCHHHHHHHHHHH
Confidence 58999999999999999999998653 45666654211 13578999999999999 7999999999999876
Q ss_pred hhcCCCCCcCCceEEEEeccCC
Q 005624 188 EQKEGGEWLQKLKYGVFGLGNR 209 (687)
Q Consensus 188 ~~~~~~~~l~~~~~aVFGlGds 209 (687)
. .|+++++++|.+|-.
T Consensus 71 ~------~l~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 71 D------NLKNKKVALFSVGGS 86 (143)
T ss_pred H------HHcCCcEEEEEEeCC
Confidence 4 488999999998744
|
|
| >COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-08 Score=107.93 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=99.9
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHH
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~ 185 (687)
+|.|+|.|++|+|+.+|++|++.|.+.| +.+.++++.+-+. .++.+.+...+.+++++||+ ++++++.+..++..
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~g--v~v~~~~~~~~~~--~eI~~~i~~a~~~vvGsPT~-~~~~~p~i~~~l~~ 322 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEG--VDVEVINLEDADP--SEIVEEILDAKGLVVGSPTI-NGGAHPPIQTALGY 322 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcC--CceEEEEcccCCH--HHHHHHHhhcceEEEecCcc-cCCCCchHHHHHHH
Confidence 8999999999999999999999999987 4567888877654 45667888999999999999 67777788999888
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005624 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
+... ..+++..+||| +|.|-..+.+.+.+.|+++|-+...+
T Consensus 323 v~~~-----~~~~k~~~vfg----S~GW~g~av~~i~~~l~~~g~~~~~~ 363 (388)
T COG0426 323 VLAL-----APKNKLAGVFG----SYGWSGEAVDLIEEKLKDLGFEFGFD 363 (388)
T ss_pred HHhc-----cCcCceEEEEe----ccCCCCcchHHHHHHHHhcCcEEecc
Confidence 8764 36778899999 78888999999999999999887665
|
|
| >KOG3378 consensus Globins and related hemoproteins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-09 Score=108.21 Aligned_cols=162 Identities=18% Similarity=0.281 Sum_probs=95.2
Q ss_pred cccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCC---CCCCCeEE
Q 005624 465 RYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPA---DAKVPIIM 541 (687)
Q Consensus 465 R~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~---~~~~PiIm 541 (687)
|.||.|+......+.++|.|+. .-.|+.|+|++.-...|+ .+.+..+.|+|.... +.++|+++
T Consensus 202 ~~~~~S~~~~t~rN~~R~sVr~---------~A~G~VS~~~H~~~KVGD-----~v~~S~PAG~F~~~r~~~~~N~PL~~ 267 (385)
T KOG3378|consen 202 REYSLSNRVDTCRNQFRISVRR---------VAGGVVSNFVHDNLKVGD-----IVGVSPPAGNFVYKRSEENVNRPLLC 267 (385)
T ss_pred HHHHHhhhhhhhccceeEEEee---------hhchhhHHHhhccccccc-----eeeccCCCccceeehhhhccCCceEE
Confidence 5555555444345667776653 345999999987666554 345666678997653 45799999
Q ss_pred EecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcC-CCcEEEEEEecCCC--Cccccch
Q 005624 542 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQLIVAFSREGP--TKEYVQH 618 (687)
Q Consensus 542 Ia~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g-~~~~l~~afSr~~~--~k~yVq~ 618 (687)
.++|.||+|+++++++.+.-. ..| .+..-++++..+. .+.++.--||.+.. .+.-|..
T Consensus 268 ~a~GiGiTPLi~iiE~~~~C~-------------~~R------P~~~~~~~~~~K~k~~~K~~e~~~~E~s~~~~~IV~~ 328 (385)
T KOG3378|consen 268 FAGGIGITPLIPIIETALLCY-------------SSR------PFKQWLEQLKLKYKENLKLKEFFSEESSVTKEQIVDE 328 (385)
T ss_pred ecCCcCccccHHHHHHHHhcC-------------CCC------cHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 999999999999999876421 222 1112222221110 00011111222211 2333333
Q ss_pred hhhc--chHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHH
Q 005624 619 KMME--KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQE 660 (687)
Q Consensus 619 ~l~e--~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~ 660 (687)
.+.. +.+.+-++--..++||.||| ...++.|...|.++..+
T Consensus 329 ~~~~iI~~~~L~~~~~s~~DiY~~G~-~~~M~~~~~~L~~L~~~ 371 (385)
T KOG3378|consen 329 VMTRIINEEDLEKLDLSECDIYMLGP-NNYMRFVKQELVKLGVE 371 (385)
T ss_pred hhhhhcCHHHhhhcChhhCceeeeCc-HHHHHHHHHHHHHhcCC
Confidence 2221 22333333346799999999 88999999999887543
|
|
| >PF12641 Flavodoxin_3: Flavodoxin domain | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.3e-07 Score=89.52 Aligned_cols=96 Identities=24% Similarity=0.415 Sum_probs=73.0
Q ss_pred EEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHH
Q 005624 108 TIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (687)
Q Consensus 108 ~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~ 187 (687)
+|+|.|.||||+++|+.|++.|.. ..++++++... .+.++++++++..+| .|.+++.+++|++.|
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~------~~~~~~~~~~~-------~~~~yD~i~lG~w~d-~G~~d~~~~~fl~~l- 65 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA------KDIVSVEEPPE-------DLEDYDLIFLGFWID-KGTPDKDMKEFLKKL- 65 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC------ceeEecccccc-------CCCCCCEEEEEcCcc-CCCCCHHHHHHHHHc-
Confidence 489999999999999999998864 25667766552 267899999999999 799999988886554
Q ss_pred hhcCCCCCcCCceEEEEeccCC--chHHHHHHHHHHHHHHHH
Q 005624 188 EQKEGGEWLQKLKYGVFGLGNR--QYEHFNKIAKVVDEILAN 227 (687)
Q Consensus 188 ~~~~~~~~l~~~~~aVFGlGds--~Y~~f~~~ak~ld~~L~~ 227 (687)
+++++++||.--. .=+|+....+++.+.+.+
T Consensus 66 ---------~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~ 98 (160)
T PF12641_consen 66 ---------KGKKVALFGTAGAGPDSEYAKKILKNVEALLPK 98 (160)
T ss_pred ---------cCCeEEEEEecCCCCchHHHHHHHHHHHHhhcc
Confidence 5688999985311 115677777777766644
|
|
| >PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1 | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.9e-07 Score=86.89 Aligned_cols=124 Identities=20% Similarity=0.287 Sum_probs=95.6
Q ss_pred ceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCCCCC---------------CcchhHHHhccCCCeEEEEe
Q 005624 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYA---------------DEEDEYEEKLKKENIVFFFL 167 (687)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~---------------~~~~~~~~~l~~~~~vi~~~ 167 (687)
|+|+|++||.. |+|+.+|+.+++.+++.+ ..++++|+.++. .+-.++.+++...+.+||++
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s 78 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS 78 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee
Confidence 68999999986 999999999999998874 668899999862 11122346688899999999
Q ss_pred eCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 168 ATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 168 sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
|+| .|.+|.-++.|++|+.. .....+.++.+++++.|.+.... ..+...+...|..+|+.-+-
T Consensus 79 P~y-~~~~s~~lK~~lD~~~~--~~~~~~~~K~~~~i~~~g~~~g~-~~~~~~l~~~~~~~~~~~~~ 141 (152)
T PF03358_consen 79 PVY-NGSVSGQLKNFLDRLSC--WFRRALRGKPVAIIAVGGGRRGG-LRALEQLRQILDYLGMIVVP 141 (152)
T ss_dssp EEB-TTBE-HHHHHHHHTHHH--THTTTTTTSEEEEEEEESSSSTT-HHHHHHHHHHHHHTTBEEEC
T ss_pred cEE-cCcCChhhhHHHHHhcc--ccccccCCCEEEEEEEecCCcHH-HHHHHHHHHHHHHCCCEEcC
Confidence 999 99999999999999973 11236899999999887654422 33567777778888887543
|
5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction |
| >PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.5e-07 Score=87.49 Aligned_cols=116 Identities=19% Similarity=0.329 Sum_probs=67.6
Q ss_pred CeEEEecCCcchhHHHHHHHHHHhhh-cCCCCCcEEEEEeeccCCcccccHHHHHHHHHcC--CCcEEEEEEecCCCCc-
Q 005624 538 PIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG--ALSQLIVAFSREGPTK- 613 (687)
Q Consensus 538 PiImIa~GTGIAPfrsflq~r~~~~~-~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g--~~~~l~~afSr~~~~k- 613 (687)
-++|||+|+||+|+.+++++...... ......++.|+|-+|+.+.=..|.++|+++.... ...++.+..+++....
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~~~~ 82 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESSAPS 82 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT------
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCccccc
Confidence 38999999999999999999987654 2234578999999999873347886666554331 2446677666653210
Q ss_pred -----cc-----------------------cchhhhcchHHHH-hc----ccCCcEEEEECCchhhHHHHHHHH
Q 005624 614 -----EY-----------------------VQHKMMEKSSDIW-NM----LSEGAYLYVCGDAKSMARDVHRTL 654 (687)
Q Consensus 614 -----~y-----------------------Vq~~l~e~~~~v~-~~----i~~~~~iYvCG~a~~M~~~V~~~L 654 (687)
.. ....-+-+.+.+. +. -...-.|++||| ++|.++|+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~gRP~~~~~~~~~~~~~~~~~~~V~~CGP-~~m~~~vr~~v 155 (156)
T PF08030_consen 83 NSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYGRPDLDEILSEVASQQSSGRVAVFVCGP-PSMVDDVRNAV 155 (156)
T ss_dssp -------------------------------EEES---HHHHHHHHHHHSTT-EEEEEEES--HHHHHHHHHHH
T ss_pred chhhhhcccccccccccccCCcccCCCcccceecCCCCHHHHHHHHHHhCCCCcEEEEEcCc-HHHHHHHHHHh
Confidence 00 0000111222222 22 123568999999 99999998864
|
; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A. |
| >COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.9e-07 Score=86.33 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=83.7
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
|+++|+|+|++|+|.++|+.|+..|.+.| ..+++.|+..... -++.+++.+|++.|.| .|........|++
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g--~qvdi~dl~~~~~------~~l~~ydavVIgAsI~-~~h~~~~~~~Fv~ 71 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESG--IQVDIQDLHAVEE------PALEDYDAVVIGASIR-YGHFHEAVQSFVK 71 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcC--Ceeeeeehhhhhc------cChhhCceEEEecchh-hhhhHHHHHHHHH
Confidence 68999999999999999999999999887 4567777765441 2578899999999999 9999999888888
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCchHHH---HHHHHHHHHHHHHcCCc
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQYEHF---NKIAKVVDEILANQGAK 231 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f---~~~ak~ld~~L~~lGa~ 231 (687)
.-.+ .|.+++.|+|.++ -.|..+ -..-..+++.|.+--.+
T Consensus 72 k~~e------~L~~kP~A~f~vn-l~a~k~k~~~e~~~yv~kfl~~~~Wq 114 (175)
T COG4635 72 KHAE------ALSTKPSAFFSVN-LTARKEKRTPETNSYVRKFLMKSPWQ 114 (175)
T ss_pred HHHH------HHhcCCceEEEee-hhhcccccCchHHHHHHHHHhcCCCc
Confidence 7766 4889999999875 223222 22233455555554333
|
|
| >PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.5e-06 Score=83.62 Aligned_cols=132 Identities=17% Similarity=0.323 Sum_probs=74.8
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC---c------ch--h------------HHHhccCCCe
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD---E------ED--E------------YEEKLKKENI 162 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---~------~~--~------------~~~~l~~~~~ 162 (687)
+++|+|=|+||||+.+|+.|++.+... .+++...+.|.. + .. + ...++.+|+.
T Consensus 1 K~LVvYyS~tGnT~~vA~~Ia~~~gad----i~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~ 76 (156)
T PF12682_consen 1 KTLVVYYSRTGNTKKVAEKIAEKTGAD----IFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDT 76 (156)
T ss_dssp -EEEEE--SSSHHHHHHHHHHHCCT-E----EEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-SE
T ss_pred CEEEEEECCCchHHHHHHHHHHHHCCC----EEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCCE
Confidence 579999999999999999999876432 234444444443 0 00 0 0125688999
Q ss_pred EEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchHHHHHHHHHHHHHHHHcCCccccccccccC
Q 005624 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 241 (687)
Q Consensus 163 vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~ 241 (687)
++++.|+| -|.+|..+..|++.. .++|++++.|-. |.+.+ ..+.+.+.+.+. +|+-.-.+....+
T Consensus 77 I~lG~PvW-~~~~~~pv~tFL~~~--------~~~gK~v~~F~T~ggs~~---~~~~~~l~~~~~--~a~i~~g~~~~~~ 142 (156)
T PF12682_consen 77 IFLGTPVW-WGTPPPPVRTFLEQY--------DFSGKTVIPFCTSGGSGF---GNSLEDLKKLCP--GATILEGLAINRG 142 (156)
T ss_dssp EEEEEEEE-TTEE-CHHHHHHHCT--------TTTTSEEEEEEE-SS--C---HHHHHHHHHH-T--TSEE---EE---S
T ss_pred EEEechHH-cCCCCHHHHHHHHhc--------CCCCCcEEEEEeeCCCCh---hHHHHHHHHHCC--CCEeecCeEEeCC
Confidence 99999999 899999988886432 488999999954 43333 333444444331 3432222222111
Q ss_pred CCCcHHhHHHHHHHH
Q 005624 242 DQCIEDDFSAWRELV 256 (687)
Q Consensus 242 ~~~~e~~f~~W~~~l 256 (687)
+. .++++.+|.++|
T Consensus 143 ~~-~~~~i~~Wl~~i 156 (156)
T PF12682_consen 143 SV-SEEEIKEWLKKI 156 (156)
T ss_dssp ----HHHHHHHHHHT
T ss_pred Cc-CHHHHHHHHHhC
Confidence 11 578899998764
|
|
| >PRK06934 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.6e-05 Score=78.94 Aligned_cols=133 Identities=12% Similarity=0.201 Sum_probs=79.6
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC-------------------cchhHHHhccCCCeEEEE
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD-------------------EEDEYEEKLKKENIVFFF 166 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-------------------~~~~~~~~l~~~~~vi~~ 166 (687)
.++|.=|+.||||+.+|+.|++.+... -.++...+.|.. +-.....++..++.++++
T Consensus 61 s~~~~~~~~~GnTk~vAe~Ia~~~gaD----l~eI~~~~~Y~~~yd~~~~~a~~E~~~~~~P~L~~~~~dl~~YD~I~IG 136 (221)
T PRK06934 61 SILQKNGEVLGSTQYVAQIIQEETGGD----LFRIETVKPYPRQHDPLLKYAEQEVKEGGRPEMREKIQNLADYDQIFIG 136 (221)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHCCC----EEEEEEccccCCCCchhhhHHHHhhhcCCCHHHHHHHHhHHhCCEEEEE
Confidence 345555556699999999999987542 133433443422 111112467899999999
Q ss_pred eeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchHHHHHHHHHHHHHHHHcCCccccc-ccc-ccCC-
Q 005624 167 LATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVP-VGL-GDDD- 242 (687)
Q Consensus 167 ~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~ak~ld~~L~~lGa~~l~~-~g~-gD~~- 242 (687)
.|.| -|.+|.-...|++.. .++|++++.|-. |-+.. ....+.+.+.. -+|+.+.+ +.. +++-
T Consensus 137 ~PIW-wg~~P~~V~tFLe~~--------d~~GK~I~pF~T~ggsg~---g~s~~~i~~l~--~~a~~v~~Gl~i~~~~~~ 202 (221)
T PRK06934 137 YPIW-WYKMPMVMYSFFEQH--------DFSGKTLIPFTTHGGSRF---SDSLREIKRLQ--PNAQLVTQGLAISRNDVT 202 (221)
T ss_pred cchh-hccccHHHHHHHHhc--------CCCCCEEEEEEecCCCCc---cchHHHHHHHc--CCcceeccceeeecCccc
Confidence 9999 899999988886444 488999999964 22333 22233333322 13322322 111 2221
Q ss_pred -CCcHHhHHHHHHHH
Q 005624 243 -QCIEDDFSAWRELV 256 (687)
Q Consensus 243 -~~~e~~f~~W~~~l 256 (687)
...++++..|.+++
T Consensus 203 ~~~~~~~I~~Wl~~l 217 (221)
T PRK06934 203 DDDTPKEIINWLNTL 217 (221)
T ss_pred ccchHHHHHHHHHHc
Confidence 12478899998764
|
|
| >PRK10569 NAD(P)H-dependent FMN reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00013 Score=72.63 Aligned_cols=120 Identities=11% Similarity=0.162 Sum_probs=93.7
Q ss_pred ceEEEEEecC--cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcc-----------hhHHHhccCCCeEEEEeeCCC
Q 005624 105 QKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE-----------DEYEEKLKKENIVFFFLATYG 171 (687)
Q Consensus 105 ~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~-----------~~~~~~l~~~~~vi~~~sTyG 171 (687)
|+|+++.||- .+++..+++.+.+.+.+.+ ..++++|+.++..++ ..+.+.+...+.+||++|.|
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g--~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y- 77 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLG--VEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY- 77 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCC--CEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc-
Confidence 5799999997 4889999999999998765 567778887665422 12335677889999999999
Q ss_pred CCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 172 DGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 172 ~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
.|..|.-.+.|++|+.. ..|.++.+++++.| ....+.-..--.+...|..+||..+
T Consensus 78 ~~s~pg~LKn~iD~l~~-----~~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~ 133 (191)
T PRK10569 78 KASFSGALKTLLDLLPE-----RALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEI 133 (191)
T ss_pred CCCCCHHHHHHHHhCCh-----hhhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeec
Confidence 99999999999999953 25899999999998 4455555444566778888998854
|
|
| >PRK00170 azoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00029 Score=70.40 Aligned_cols=157 Identities=10% Similarity=0.004 Sum_probs=102.1
Q ss_pred CceEEEEEecC--c-chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc---------------------------chhH
Q 005624 104 KQKVTIFFGTQ--T-GTAEGFAKALADEARARYDKAIFKVVDIDDYADE---------------------------EDEY 153 (687)
Q Consensus 104 ~~~v~I~YgSq--t-Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------------------------~~~~ 153 (687)
||+|+|++||- . |+|..+|+.+.+.+++.+++..++++|+.+.+.. ..++
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l 80 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDEL 80 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 57899999996 3 8899999999999998754566788888654321 0112
Q ss_pred HHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhc--------CCCCCcCCceEEEEec-cCCc-hHHHHHHHHHHHH
Q 005624 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK--------EGGEWLQKLKYGVFGL-GNRQ-YEHFNKIAKVVDE 223 (687)
Q Consensus 154 ~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~--------~~~~~l~~~~~aVFGl-Gds~-Y~~f~~~ak~ld~ 223 (687)
.+.+...+.+||++|.| .+..|.-.+.|++++.... .+...++++++.++.. |... ...+..+...+..
T Consensus 81 ~~~i~~AD~iV~~sP~y-~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~ 159 (201)
T PRK00170 81 LEEFLAADKIVIAAPMY-NFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKT 159 (201)
T ss_pred HHHHHHCCEEEEeeccc-ccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHH
Confidence 34577889999999999 9999999999999985310 1123578999888875 4321 1112344555667
Q ss_pred HHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHh
Q 005624 224 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (687)
Q Consensus 224 ~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (687)
.|.-+|.+.+-.+.....+. ..+.-.+|.++....+.+
T Consensus 160 ~~~~~G~~~~~~~~~~g~~~-~~~~~~~~~~~a~~~~~~ 197 (201)
T PRK00170 160 FLGFIGITDVEFVFAEGHNY-GPEKAAKIISAAKAAADE 197 (201)
T ss_pred HHHhcCCCceEEEEEecccC-CchHHHHHHHHHHHHHHH
Confidence 77778988544433221111 223344555554444433
|
|
| >PRK01355 azoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00056 Score=68.55 Aligned_cols=159 Identities=13% Similarity=0.122 Sum_probs=106.7
Q ss_pred CceEEEEEecCc----chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc-----------------chhHHHhccCCCe
Q 005624 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------------EDEYEEKLKKENI 162 (687)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------------~~~~~~~l~~~~~ 162 (687)
|++|+|+.||-. |++..+|+.+.+.+++.+....++++|+.+.... ...+.+.+...+.
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 80 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDK 80 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCE
Confidence 679999999985 8899999999999988665566788888665431 1123456788899
Q ss_pred EEEEeeCCCCCCCCchHHHHHHHHHhhc--------CC---CCCcCCceEEEEec-cCCc-hHHHHHHHHHHHHHHHHcC
Q 005624 163 VFFFLATYGDGEPTDNAARFYKWFTEQK--------EG---GEWLQKLKYGVFGL-GNRQ-YEHFNKIAKVVDEILANQG 229 (687)
Q Consensus 163 vi~~~sTyG~G~~pdna~~F~~~L~~~~--------~~---~~~l~~~~~aVFGl-Gds~-Y~~f~~~ak~ld~~L~~lG 229 (687)
+||++|.| .+.+|.-.+.|++++.... .. ...+.+++..|+-. |... +..+.....-+...+.-+|
T Consensus 81 iV~~sP~y-~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G 159 (199)
T PRK01355 81 VVISCPMT-NFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLG 159 (199)
T ss_pred EEEEcCcc-ccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcC
Confidence 99999999 9999999999999986421 01 12477888777643 3222 1123445566777787889
Q ss_pred CccccccccccCCC-CcH-HhHHHHHHHHHHHHHhh
Q 005624 230 AKRLVPVGLGDDDQ-CIE-DDFSAWRELVWPELDNL 263 (687)
Q Consensus 230 a~~l~~~g~gD~~~-~~e-~~f~~W~~~l~~~L~~~ 263 (687)
.+.+..+..+..+. ..+ +....|.+.-.+++.+.
T Consensus 160 ~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (199)
T PRK01355 160 AKVVDSILLAGTKVEPLSNKTPKEIVEEFDKEIIEK 195 (199)
T ss_pred CCceeEEEEecccCCccccccHHHHHHHHHHHHHHH
Confidence 98665544433222 111 22667776655555443
|
|
| >TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00049 Score=67.25 Aligned_cols=121 Identities=12% Similarity=0.207 Sum_probs=90.5
Q ss_pred eEEEEEecC--cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcc-----------hhHHHhccCCCeEEEEeeCCCC
Q 005624 106 KVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE-----------DEYEEKLKKENIVFFFLATYGD 172 (687)
Q Consensus 106 ~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~-----------~~~~~~l~~~~~vi~~~sTyG~ 172 (687)
+|+++.||- .|++.++++.+.+.+.+.+ ..++++|+.++...+ ..+.+++...+.+||++|.| .
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~--~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y-~ 77 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQG--VEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVY-K 77 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHCC--CeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcc-c
Confidence 478899995 7889999999999998765 346677776543211 12335567889999999999 9
Q ss_pred CCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005624 173 GEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 173 G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
|.+|...+.|++|+... .+.++.+++++.| ..+.++...-..+...|..+|+..+.+
T Consensus 78 ~sip~~LK~~iD~~~~~-----~l~~K~v~~~~~g-g~~~~~~~~~~~l~~~l~~l~~~~~~~ 134 (171)
T TIGR03567 78 ASYSGVLKALLDLLPQR-----ALRGKVVLPIATG-GSIAHLLAIDYALKPVLSALGARHILP 134 (171)
T ss_pred CCCCHHHHHHHHhCChh-----hhCCCEEEEEEcC-CchhHHHHHHHHHHHHHHHcCCccccc
Confidence 99999999999998532 4889999988887 455555544345788888999965433
|
Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566). |
| >KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00019 Score=84.13 Aligned_cols=183 Identities=15% Similarity=0.295 Sum_probs=99.8
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCC--CC-CCC----CceeeEEEeeCCcccCC
Q 005624 461 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPM--EK-SND----CSWAPIFVRQSNFKLPA 533 (687)
Q Consensus 461 ~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~--~~-~~~----~~~~~v~v~~~~F~lp~ 533 (687)
.++-++|||+|+| +++.+.+.++.. |--|+-|.+.... .+ ... ..++.|..+.|.=.-+-
T Consensus 397 ~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s~d~ 463 (646)
T KOG0039|consen 397 KLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPFPKILIDGPYGAPSQDV 463 (646)
T ss_pred ccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccCceEEEECCCCCCchhh
Confidence 4577999999999 467888877644 3334444332220 00 000 11233333322111111
Q ss_pred CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCC------------CCCcEEEEEeeccCCccc-ccHHHHHHHHH---cC
Q 005624 534 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGA------------ELGPSLLFFGCRNRKMDY-IYEDELNNFVQ---SG 597 (687)
Q Consensus 534 ~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~------------~~~~~~LffG~R~~~~D~-ly~del~~~~~---~g 597 (687)
..-.-++|||+|.|++||.+++++.....+.+. ..+++..++-||... ++ .+.+.+.+..+ .+
T Consensus 464 ~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~-sf~wf~~~l~~v~~~~~~~ 542 (646)
T KOG0039|consen 464 FKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQR-SFEWFKGLLTEVEEYDSSG 542 (646)
T ss_pred hhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEecccc-chHHHHHHHHHHHHHHhcC
Confidence 112347999999999999999999987654332 346778888898876 54 55665555542 22
Q ss_pred CCcEEEEEEec---CC-CCc----------------cccchh------hhcchHHHHhcc--c-CC--cEEEEECCchhh
Q 005624 598 ALSQLIVAFSR---EG-PTK----------------EYVQHK------MMEKSSDIWNML--S-EG--AYLYVCGDAKSM 646 (687)
Q Consensus 598 ~~~~l~~afSr---~~-~~k----------------~yVq~~------l~e~~~~v~~~i--~-~~--~~iYvCG~a~~M 646 (687)
.. +++...+. .. ..+ -.++.. -+-+-+++++-+ . ++ --|+.||| +.|
T Consensus 543 ~~-e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g~~~~~~~gRPn~~~~~~~~~~~~~~~~vgVf~CGp-~~l 620 (646)
T KOG0039|consen 543 VI-ELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTGLKVETHFGRPNWKEVFKEIAKSHPNVRVGVFSCGP-PGL 620 (646)
T ss_pred Cc-hhheehhHhHhhhhhhhHHHHHHHhhcccccCccccccceeeeeCCCCCHHHHHHHHHhhCCCceEEEEEeCC-HHH
Confidence 22 33333321 11 111 111111 111223343333 1 22 47999999 999
Q ss_pred HHHHHHHHHHHHH
Q 005624 647 ARDVHRTLHTIVQ 659 (687)
Q Consensus 647 ~~~V~~~L~~i~~ 659 (687)
.+.+++...+...
T Consensus 621 ~~~~~~~~~~~~~ 633 (646)
T KOG0039|consen 621 VKELRKLCNDFSS 633 (646)
T ss_pred HHHHHHHHHhccc
Confidence 9999887776543
|
|
| >PRK09739 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00088 Score=67.10 Aligned_cols=157 Identities=12% Similarity=0.079 Sum_probs=101.8
Q ss_pred CceEEEEEecC--cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC---------------------cchhHHHhccCC
Q 005624 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYAD---------------------EEDEYEEKLKKE 160 (687)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---------------------~~~~~~~~l~~~ 160 (687)
||+|+|++||- .|++..+++.+.+.+++.+ ..++++|+.+... +-..+.+.+...
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g--~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A 80 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERG--HQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEH 80 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCC--CEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhC
Confidence 78999999987 5788999999999998775 4567777754321 112344668889
Q ss_pred CeEEEEeeCCCCCCCCchHHHHHHHHHhhcC---CCCCcCCceEEEEeccCCchHHHHH------HHHHHH-HHHHHcCC
Q 005624 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKE---GGEWLQKLKYGVFGLGNRQYEHFNK------IAKVVD-EILANQGA 230 (687)
Q Consensus 161 ~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~---~~~~l~~~~~aVFGlGds~Y~~f~~------~ak~ld-~~L~~lGa 230 (687)
+.+||++|.| .+.+|.-.+.|++++..... ....|.+++..++......|++|.. +...+. ..+.-+|.
T Consensus 81 D~iV~~~P~y-~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~~~~~~~~~~~~~~~~l~~~~~~~~G~ 159 (199)
T PRK09739 81 DALVFVFPLW-WYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSKESFVKRGWEKNMSDYLNVGMASYLGI 159 (199)
T ss_pred CEEEEECchh-hhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCChHHhcccccccHHHHHHHhhhhhcCCc
Confidence 9999999999 99999999999998753210 1134788888877653334444322 222233 33334576
Q ss_pred ccccccccccCC-----CCcHHhHHHHHHHHHHHHHhh
Q 005624 231 KRLVPVGLGDDD-----QCIEDDFSAWRELVWPELDNL 263 (687)
Q Consensus 231 ~~l~~~g~gD~~-----~~~e~~f~~W~~~l~~~L~~~ 263 (687)
+.+-....+... ....+.++.|.++......++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 197 (199)
T PRK09739 160 EDSDVTFLYNTLVFDGEELHASHYQSLLSQAREMVDAL 197 (199)
T ss_pred cccceEEEecccccccccCCHHHHHHHHHHHHHHHHHh
Confidence 643222222211 234667889988877665543
|
|
| >TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00094 Score=65.41 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=87.6
Q ss_pred eEEEEEecC--cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC-------------cchhHHHhccCCCeEEEEeeCC
Q 005624 106 KVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYAD-------------EEDEYEEKLKKENIVFFFLATY 170 (687)
Q Consensus 106 ~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-------------~~~~~~~~l~~~~~vi~~~sTy 170 (687)
+|+++.||. .|++..+|+.+.+.+.+..+ ..++++|+.++++ +..++.+++...+.+||++|+|
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g-~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y 79 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLG-ISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVY 79 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcC-CeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcC
Confidence 588999997 59999999999998865432 4567777765421 1123446678899999999999
Q ss_pred CCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 171 GDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
.|.+|.-.+.|++|+.. ..+.+++.++++.|.... +...+...+...|..+|+..+
T Consensus 80 -~~s~~~~LKn~lD~~~~-----~~l~~K~~~~v~~~g~~~-~~~~~~~~l~~~~~~l~~~~~ 135 (174)
T TIGR03566 80 -RGSYTGLFKHLFDLVDP-----NALIGKPVLLAATGGSER-HALMVEHQLRPLFGFFQALTL 135 (174)
T ss_pred -cCcCcHHHHHHHHhcCH-----hHhCCCEEEEEEecCCcc-chHHHHHHHHHHHHHhCcccc
Confidence 99999999999999853 248899999998875432 222233446667777887754
|
Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model. |
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00013 Score=87.34 Aligned_cols=82 Identities=20% Similarity=0.170 Sum_probs=60.4
Q ss_pred CChHHHHHHHcC-----CC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeE
Q 005624 449 PPLGVFFAAIVP-----RL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 522 (687)
Q Consensus 449 ~p~~~~l~~~~p-----~l-~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v 522 (687)
.-+|||+.+..+ .+ .||++||++.... .+.+.+++.+| |..|.+|+++.+|+. +.+
T Consensus 819 ~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvV-----------GkgT~~Ls~l~~Gd~------v~v 880 (1028)
T PRK06567 819 FKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEV-----------GKSTSLCKTLSENEK------VVL 880 (1028)
T ss_pred CCCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEE-----------ChHHHHHhcCCCCCE------EEE
Confidence 347999854432 22 5689999997653 46799888766 889999999988763 445
Q ss_pred EEee-CCcccCCCCCCCeEEEecCCcchh
Q 005624 523 FVRQ-SNFKLPADAKVPIIMIGPGTGLAP 550 (687)
Q Consensus 523 ~v~~-~~F~lp~~~~~PiImIa~GTGIAP 550 (687)
..+. ..|.++. ...+++||+|.|+||
T Consensus 881 ~GPLG~pF~i~~--~k~vLLVgGGVGiAp 907 (1028)
T PRK06567 881 MGPTGSPLEIPQ--NKKIVIVDFEVGNIG 907 (1028)
T ss_pred EcccCCCCCCCC--CCeEEEEEccccHHH
Confidence 5553 4587764 346999999999998
|
|
| >PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0013 Score=65.70 Aligned_cols=154 Identities=14% Similarity=0.096 Sum_probs=108.4
Q ss_pred ceEEEEEecCcc---hHHHHHHHHHHHHHhhcCCCeeEEecCCCC--------------CC-----cchhH-H-HhccCC
Q 005624 105 QKVTIFFGTQTG---TAEGFAKALADEARARYDKAIFKVVDIDDY--------------AD-----EEDEY-E-EKLKKE 160 (687)
Q Consensus 105 ~~v~I~YgSqtG---tae~~A~~la~~l~~~~~~~~v~v~dl~~~--------------~~-----~~~~~-~-~~l~~~ 160 (687)
|+|+|++||-.+ ++..+++.+.+.+++.++ ..++++||.+. .. .+... . +.+...
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~-~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~~d~~~~~~~~l~~A 79 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGP-HEVEIRDLYEEFLPVLDSECFAAFRTYEQGPAIDVQSEQIEELLWA 79 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTT-SEEEEEETTTTT--SSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHS
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCC-CEEEEEECcccccccchHHHHHhhhhhhhhhhhhHHHHHHHHHHHc
Confidence 689999999987 589999999999999875 56888999774 00 11111 2 567888
Q ss_pred CeEEEEeeCCCCCCCCchHHHHHHHHHhhcC----------CCCCcCCceEEEEe-ccCCch--H-------HHHHHHHH
Q 005624 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKE----------GGEWLQKLKYGVFG-LGNRQY--E-------HFNKIAKV 220 (687)
Q Consensus 161 ~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~----------~~~~l~~~~~aVFG-lGds~Y--~-------~f~~~ak~ 220 (687)
+.+||+.|.| .+.+|.-.+.|++.+-.... ....|+++++.++- .|...+ . .+......
T Consensus 80 D~iV~~~Pl~-~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~ 158 (199)
T PF02525_consen 80 DHIVFAFPLY-WFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPY 158 (199)
T ss_dssp SEEEEEEEEB-TTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHH
T ss_pred CcceEeccce-ecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHH
Confidence 9999999999 89999999999998743211 12468899877764 554432 2 45566666
Q ss_pred HHHHHHHcCCccccccccccCC-CCcHHhHHHHHHHHHHHH
Q 005624 221 VDEILANQGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPEL 260 (687)
Q Consensus 221 ld~~L~~lGa~~l~~~g~gD~~-~~~e~~f~~W~~~l~~~L 260 (687)
+...+.-.|.+.+-.+..++.+ ...++.+++|++++-+.|
T Consensus 159 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T PF02525_consen 159 LRGILKFCGIKDVESFSFEGVDNPDREEALEKALERAAEHL 199 (199)
T ss_dssp HHHHHHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHHhhC
Confidence 7888888899988776655433 223777889988876544
|
The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A .... |
| >PRK13556 azoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0031 Score=63.59 Aligned_cols=156 Identities=10% Similarity=0.084 Sum_probs=103.5
Q ss_pred CceEEEEEecCc----chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC-----c------------------------c
Q 005624 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-----E------------------------E 150 (687)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-----~------------------------~ 150 (687)
|++|+|+.||-. +++..+++.+.+.+++.+++..++++||.+.+. + .
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVA 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHH
Confidence 578999999964 788999999999998876556788888853211 0 0
Q ss_pred hhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhc------C--CCCCcCCceEEEEeccCCch-----HHHHHH
Q 005624 151 DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK------E--GGEWLQKLKYGVFGLGNRQY-----EHFNKI 217 (687)
Q Consensus 151 ~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~------~--~~~~l~~~~~aVFGlGds~Y-----~~f~~~ 217 (687)
.++...+...+.+||++|-| ++.+|.-.+.+++|+.... . ....|.++++.|+...-..| +.+..+
T Consensus 81 ~~~~~~l~~AD~iVi~~P~y-n~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~ 159 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFPLW-NFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMA 159 (208)
T ss_pred HHHHHHHHHCCEEEEecccc-ccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhcc
Confidence 12234567789999999999 9999999999999997531 0 11358899999986632335 445555
Q ss_pred HHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHH
Q 005624 218 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 261 (687)
Q Consensus 218 ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 261 (687)
...+...|.-+|++.+-. ...+......+..+.+.++-...+.
T Consensus 160 ~~~l~~il~~~G~~~~~~-v~~~~~~~~~~~~~~~~~~a~~~~~ 202 (208)
T PRK13556 160 VKYVASMMGFFGVTNMET-VVIEGHNQFPDKAEEIITAGLEEAA 202 (208)
T ss_pred HHHHHHHHHhcCCCceeE-EEEehhhcChhHHHHHHHHHHHHHH
Confidence 567778888889875432 2222111123344555554444443
|
|
| >COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0045 Score=62.43 Aligned_cols=122 Identities=14% Similarity=0.066 Sum_probs=83.7
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC-------------------c-chhHHHhccCCCeEE
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD-------------------E-EDEYEEKLKKENIVF 164 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-------------------~-~~~~~~~l~~~~~vi 164 (687)
..|.+.|-| +|||+.+++.+++.+++.| +.++++.+.+++. | .++..+.+.+.|.+|
T Consensus 4 ~~I~gs~r~-~G~t~~l~~~~~~g~~~~G--~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI 80 (207)
T COG0655 4 LGINGSPRS-NGNTAKLAEAVLEGAEEAG--AEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGII 80 (207)
T ss_pred eEEEecCCC-CCcHHHHHHHHHHHHHHcC--CEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEE
Confidence 345666666 8999999999999999885 5567776665411 1 133345577889999
Q ss_pred EEeeCCCCCCCCchHHHHHHH-HHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCc
Q 005624 165 FFLATYGDGEPTDNAARFYKW-FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAK 231 (687)
Q Consensus 165 ~~~sTyG~G~~pdna~~F~~~-L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~ 231 (687)
|++||| .|..+..++.|++. +.-.. ....|.++..++|..+.+.-.........+...+...|..
T Consensus 81 ~gsPvy-~g~vsa~~K~fiDR~~~~~~-~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~ 146 (207)
T COG0655 81 FGSPVY-FGNVSAQMKAFIDRSTGPLW-APGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMI 146 (207)
T ss_pred EeCCee-cCCchHHHHHHHhhcchhhc-ccchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCe
Confidence 999999 99999999999998 43222 1235888888888776544322223445555555555544
|
|
| >PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.00045 Score=60.79 Aligned_cols=66 Identities=24% Similarity=0.240 Sum_probs=48.5
Q ss_pred CChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005624 449 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 449 ~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~ 525 (687)
..+|||+.+.++. ...|+|||+|.|. ..+.++|+|+.. ..|..|+||+++.+|+ .+.+..+
T Consensus 30 ~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-~~~~~~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~gP 93 (99)
T PF00970_consen 30 FKPGQFVSVRVPINGKQVSRPYSPASSPD-DKGYLEFAIKRY---------PNGRVSRYLHQLKPGD------EVEIRGP 93 (99)
T ss_dssp STTT-EEEEEEEETTEEEEEEEEBCSSTT-SSSEEEEEEEEC---------TTSHHHHHHHTSCTTS------EEEEEEE
T ss_pred cCcceEEEEEEccCCcceecceeEeeecC-CCCcEEEEEEec---------cCCHHHHHHHhCCCCC------EEEEEEc
Confidence 4678888665551 2359999999996 457899888643 4688999999987766 4677777
Q ss_pred eCCcc
Q 005624 526 QSNFK 530 (687)
Q Consensus 526 ~~~F~ 530 (687)
.|+|.
T Consensus 94 ~G~f~ 98 (99)
T PF00970_consen 94 YGNFT 98 (99)
T ss_dssp ESSEE
T ss_pred ccccC
Confidence 88885
|
To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A .... |
| >TIGR02690 resist_ArsH arsenical resistance protein ArsH | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.099 Score=53.17 Aligned_cols=129 Identities=8% Similarity=0.007 Sum_probs=89.6
Q ss_pred cccCCceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC---cch------hHHHhccCCCeEEEEee
Q 005624 100 VDDGKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD---EED------EYEEKLKKENIVFFFLA 168 (687)
Q Consensus 100 ~~~~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---~~~------~~~~~l~~~~~vi~~~s 168 (687)
-...+++|+++.||.. =++..+|+.+++.+...+ ..++++|+.+++. +.. .+...+...+.+||++|
T Consensus 22 ~~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g--~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TP 99 (219)
T TIGR02690 22 HKPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEG--RETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSP 99 (219)
T ss_pred CCCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcC--CEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCC
Confidence 3456789999999873 345678888888887553 5677787765432 111 12344567899999999
Q ss_pred CCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
-| +|..|.--+.+++|+.........+.++.++|.|.+ .... --.+...+...|..+|+..+
T Consensus 100 EY-n~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaS-gg~~-g~ra~~~LR~vl~~l~a~v~ 161 (219)
T TIGR02690 100 ER-HGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVS-GGSQ-SFNAVNILRRLGRWMRMPTI 161 (219)
T ss_pred cc-ccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeC-CcHh-HHHHHHHHHHHHHHCCCccc
Confidence 99 999999999999999753111124889999999854 1111 22355777888888888744
|
Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known. |
| >PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.18 Score=49.98 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=97.4
Q ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC----cchhHHHhccCCCeEEEEeeCCCCCCCCc
Q 005624 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD----EEDEYEEKLKKENIVFFFLATYGDGEPTD 177 (687)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~----~~~~~~~~l~~~~~vi~~~sTyG~G~~pd 177 (687)
..+|+++|++++-.+.....-+.+.+.++ .. ..+.+.||...-+ +-......|...+.+||..|.| ...+|.
T Consensus 3 ~~~~kiLiI~aHP~~~~S~~n~~l~~~~~-~~--~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~-w~~~Pa 78 (184)
T PRK04930 3 SQPPKVLLLYAHPESQDSVANRVLLKPAQ-QL--EHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLY-TYSCPA 78 (184)
T ss_pred CCCCEEEEEECCCCcccCHHHHHHHHHHH-cC--CceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCcc-ccCCcH
Confidence 45689999999988753222233333333 32 2467788765322 2222234578899999999999 888888
Q ss_pred hHHHHHHHHHhhc----CCCCCcCCceEEEEe-ccCCchHHHHH----------HHHHHHHHHHHcCCccccccccccCC
Q 005624 178 NAARFYKWFTEQK----EGGEWLQKLKYGVFG-LGNRQYEHFNK----------IAKVVDEILANQGAKRLVPVGLGDDD 242 (687)
Q Consensus 178 na~~F~~~L~~~~----~~~~~l~~~~~aVFG-lGds~Y~~f~~----------~ak~ld~~L~~lGa~~l~~~g~gD~~ 242 (687)
-.+.+++..-... ..+..|+|+++.+.- .|... +.|.. .-.-+...+.-.|.+-+-+....+..
T Consensus 79 ~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~-~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~ 157 (184)
T PRK04930 79 LLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPE-SAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPIIIYWAR 157 (184)
T ss_pred HHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCCh-HHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCcEEEecCC
Confidence 8888887665421 122358999987764 44433 23322 11222333334588877776666555
Q ss_pred CCcHHhHHHHHHHHHHHHHhhh
Q 005624 243 QCIEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 243 ~~~e~~f~~W~~~l~~~L~~~~ 264 (687)
...+++.++|.++....|.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~ 179 (184)
T PRK04930 158 RQSPEELASHARAYGDWLANPL 179 (184)
T ss_pred CCCHHHHHHHHHHHHHHHhhhh
Confidence 5567788888888777666543
|
|
| >PRK13555 azoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.22 Score=50.38 Aligned_cols=128 Identities=10% Similarity=0.140 Sum_probs=89.0
Q ss_pred CceEEEEEecCc----chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC--------------------cch--------
Q 005624 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYAD--------------------EED-------- 151 (687)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~--------------------~~~-------- 151 (687)
|++++++++|-. -.+..+|+.+.+.+++.++...++++||-+... .++
T Consensus 1 M~kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13555 1 MSKVLFVKANDRPAEQAVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATV 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHH
Confidence 578999999943 567888888888888887656677788754211 000
Q ss_pred -hHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhc------C--CCCCcCCceEEEEeccCCch-H----HHHHH
Q 005624 152 -EYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK------E--GGEWLQKLKYGVFGLGNRQY-E----HFNKI 217 (687)
Q Consensus 152 -~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~------~--~~~~l~~~~~aVFGlGds~Y-~----~f~~~ 217 (687)
.+.+.+...+.+||++|-| ++.+|.-.+.|++|+.... . ....|++++..|++.....| . .....
T Consensus 81 ~~~~~~~~~AD~lvi~~P~~-n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~ 159 (208)
T PRK13555 81 DQYLNQFLEADKVVFAFPLW-NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMA 159 (208)
T ss_pred HHHHHHHHHcCEEEEEcCcc-cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhH
Confidence 1234567789999999999 8999999999999887521 1 12358999999997732335 2 22333
Q ss_pred HHHHHHHHHHcCCcc
Q 005624 218 AKVVDEILANQGAKR 232 (687)
Q Consensus 218 ak~ld~~L~~lGa~~ 232 (687)
...+...|.-+|.+.
T Consensus 160 ~~yl~~il~~~Gi~~ 174 (208)
T PRK13555 160 VNYVTTVLGFWGITN 174 (208)
T ss_pred HHHHHHHHHhcCCCc
Confidence 356667777778764
|
|
| >COG0431 Predicted flavoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.54 Score=46.49 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=82.3
Q ss_pred ceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCC--CCC--------Cc-chhHHHhccCCCeEEEEeeCCC
Q 005624 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDID--DYA--------DE-EDEYEEKLKKENIVFFFLATYG 171 (687)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~--~~~--------~~-~~~~~~~l~~~~~vi~~~sTyG 171 (687)
++|++++||.. -.+..+|+.+++.+...+. ..+...|++ -|+ ++ -..+.+.+...+.+||++|.|
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~~~-~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD~li~~tPeY- 78 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAGGE-VEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAADGLIIATPEY- 78 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhcccCc-eEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCCEEEEECCcc-
Confidence 57899999865 4566788888888776542 222222211 111 11 112334567789999999999
Q ss_pred CCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 172 DGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 172 ~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
+|..|.-.+..++|+... .+.++..++++.|.... +.-.+...+...|..+|+..+-
T Consensus 79 n~s~pg~lKnaiD~l~~~-----~~~~Kpv~~~~~s~g~~-~~~~a~~~Lr~vl~~~~~~~~~ 135 (184)
T COG0431 79 NGSYPGALKNAIDWLSRE-----ALGGKPVLLLGTSGGGA-GGLRAQNQLRPVLSFLGARVIP 135 (184)
T ss_pred CCCCCHHHHHHHHhCCHh-----HhCCCcEEEEecCCCch-hHHHHHHHHHHHHHhcCceecc
Confidence 999999999999999753 58899988888654443 3334556777777778877553
|
|
| >PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=2 Score=42.32 Aligned_cols=152 Identities=11% Similarity=0.104 Sum_probs=93.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC----cchhHHHhccCCCeEEEEeeCCCCCCCCchHHHH
Q 005624 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD----EEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (687)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~----~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F 182 (687)
|+|+++.-......+-+.|.+.+... ..+++.||.+..+ +-....+.+...+.+||..|-| ...+|.-.+.+
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~~~---~~v~v~dL~~~~p~~~~dv~~eq~~l~~aD~iV~~fP~~-w~~~Pa~lK~w 77 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQARTL---EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLLKLW 77 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHHhc---CCeEEEEChhhcCCcchhHHHHHHHHHhCCEEEEEcChh-hccccHHHHHH
Confidence 88999998887666778888877743 2467888755322 1112234578899999999999 88899988888
Q ss_pred HHHHHhhc----CCCCCcCCceE-EEEeccCCc--h-----HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHH
Q 005624 183 YKWFTEQK----EGGEWLQKLKY-GVFGLGNRQ--Y-----EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFS 250 (687)
Q Consensus 183 ~~~L~~~~----~~~~~l~~~~~-aVFGlGds~--Y-----~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~ 250 (687)
++..-... ..+..|+|+++ .++-.|... | ..+.....-+...+.-.|.+-+-+..........+++++
T Consensus 78 iD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~~~~~~~~~~~~~~~~ 157 (176)
T PRK00871 78 IDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPPFAMHCTFICDDETLE 157 (176)
T ss_pred HHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcceEEEeeeccCCHHHHH
Confidence 87654311 12235889876 455556542 3 122223344455555678887666544333333355566
Q ss_pred HHHHHHHHHHHh
Q 005624 251 AWRELVWPELDN 262 (687)
Q Consensus 251 ~W~~~l~~~L~~ 262 (687)
+..++..+.|.+
T Consensus 158 ~~~~~~~~~L~~ 169 (176)
T PRK00871 158 GQARHYKQRLLE 169 (176)
T ss_pred HHHHHHHHHHHh
Confidence 555555554444
|
|
| >COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.85 E-value=1.9 Score=45.00 Aligned_cols=165 Identities=21% Similarity=0.339 Sum_probs=94.7
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeE
Q 005624 461 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPII 540 (687)
Q Consensus 461 ~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiI 540 (687)
+..+|.|+|.+-.. ..+++.|-+.++ ...|..|+|-.+.++|+. +-|..+.+.+..+.. ..-++
T Consensus 84 r~~~R~YTiR~~d~-~~~e~~vDfVlH--------~~~gpas~WA~~a~~GD~------l~i~GP~g~~~p~~~-~~~~l 147 (265)
T COG2375 84 RPPQRTYTIRAVDA-AAGELDVDFVLH--------GEGGPASRWARTAQPGDT------LTIMGPRGSLVPPEA-ADWYL 147 (265)
T ss_pred CCCcccceeeeecc-cccEEEEEEEEc--------CCCCcchhhHhhCCCCCE------EEEeCCCCCCCCCCC-cceEE
Confidence 34579999986532 234555444322 146999999999999873 455555666665543 45599
Q ss_pred EEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhh
Q 005624 541 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKM 620 (687)
Q Consensus 541 mIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l 620 (687)
|||==|++--+.++|++.-.. -+...|.-.+... |. .++. ....+ ++.... |++.. + ...+
T Consensus 148 LigDetAlPAIa~iLE~lp~~-------~~~~a~lev~d~a-d~---~~l~---~~~~l-~~~Wl~-r~~~~--~-~~ll 208 (265)
T COG2375 148 LIGDETALPAIARILETLPAD-------TPAEAFLEVDDAA-DR---DELP---SPDDL-ELEWLA-RDDAP--T-EQLL 208 (265)
T ss_pred EeccccchHHHHHHHHhCCCC-------CceEEEEEeCChH-Hh---hccC---CCCce-eEEEec-CCCcc--c-hHHH
Confidence 999999998888888875321 2446677777664 43 1111 11222 344333 33211 1 1122
Q ss_pred hcchHHHHhc-c-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHH
Q 005624 621 MEKSSDIWNM-L-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 668 (687)
Q Consensus 621 ~e~~~~v~~~-i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~ 668 (687)
.+. +.+. + ..+.+++|.|- ..|++.+++ .+.++.|++...
T Consensus 209 ~~a---~~~~~~P~~~~~vwiagE-~~~v~~~Rk----~L~~e~g~dk~~ 250 (265)
T COG2375 209 AAA---LAQAALPAGDYYVWIAGE-ASAVKAIRK----FLRNERGFDKSR 250 (265)
T ss_pred HHH---HhcccCCCCceEEEEecc-HHHHHHHHH----HHhhhcCCCHHH
Confidence 221 1222 2 23479999998 667665555 445566776654
|
|
| >KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.63 Score=44.64 Aligned_cols=130 Identities=18% Similarity=0.152 Sum_probs=82.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc-----------chhH----HHhccCCCeEEEEee
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------EDEY----EEKLKKENIVFFFLA 168 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------~~~~----~~~l~~~~~vi~~~s 168 (687)
+.+|.|+|-|.+|.-+.+|+...+.+...+.. .++..+.+.-.+ +.+| .+.|.++|..+|+.|
T Consensus 1 ~~kv~iv~ys~yghv~~lAe~~kkGie~a~ge--A~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~P 78 (203)
T KOG3135|consen 1 MPKVAIVIYSTYGHVAKLAEAEKKGIESAGGE--ATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFP 78 (203)
T ss_pred CceEEEEEEEcccHHHHHHHHHHhhhhccCCe--eEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeeccc
Confidence 35789999999999999999999988876643 233333221110 0011 345788999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccc
Q 005624 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLG 239 (687)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~g 239 (687)
|- -|.+|..++.||+.-... -....|.|+..++|=.+-+.= .+=- .+...-..|.-.| -.++|+|.-
T Consensus 79 TR-fG~~~AQ~kaF~D~TggL-W~~~aL~GK~AG~F~Stgs~gGgqE~-talta~t~LvHHG-mifVPlGYk 146 (203)
T KOG3135|consen 79 TR-FGNMPAQWKAFWDSTGGL-WAKGALAGKPAGIFVSTGSQGGGQET-TALTAITQLVHHG-MIFVPLGYK 146 (203)
T ss_pred cc-ccCcHHHHHHHHhccCch-hhhccccCCceeEEEeccCCCCchHh-HHHHHHHHHHhcc-eEEEecccc
Confidence 99 899999999999852211 012359999999996654332 1111 1222222333344 457788753
|
|
| >COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.25 E-value=9.8 Score=37.87 Aligned_cols=158 Identities=13% Similarity=0.085 Sum_probs=93.0
Q ss_pred ceEEEEEecCc-chHHHHHHHHHHHHHhhcCCCe-----eEEe----cCCC--CCCcchhHHHhccCCCeEEEEeeCCCC
Q 005624 105 QKVTIFFGTQT-GTAEGFAKALADEARARYDKAI-----FKVV----DIDD--YADEEDEYEEKLKKENIVFFFLATYGD 172 (687)
Q Consensus 105 ~~v~I~YgSqt-Gtae~~A~~la~~l~~~~~~~~-----v~v~----dl~~--~~~~~~~~~~~l~~~~~vi~~~sTyG~ 172 (687)
|+|+|+||--- ..+-..++.+.+.+.+.+..+. .... ...| +..|-..-.+.+...+.+||.-|.| =
T Consensus 1 mkiLii~aHP~~sf~~~~~~~~~~~~n~~~~~v~~~dl~~~~fd~~~~~~d~~~~~Dv~~E~e~l~~AD~ivlqfPlw-W 79 (189)
T COG2249 1 MKILIIYAHPNESFTHALSDAALERLNEAGHEVALKDLYALGFDPYLTYPDGEFPIDVKAEQEKLLWADVIVLQFPLW-W 79 (189)
T ss_pred CcEEEEEeCchhhhhHHHHHHHHHHHHHcchHHHhhhhhhhcCCceeecCccCCCCCHHHHHHHHHhcceEEEEcCch-h
Confidence 68999999985 3334444444445544432110 0111 1122 3332222235678889999999999 6
Q ss_pred CCCCchHHHHHHHHHhhc----CCC----CCcCCceEEEEeccCCchHHHHHHHHH---------HHHHHHHcCCccccc
Q 005624 173 GEPTDNAARFYKWFTEQK----EGG----EWLQKLKYGVFGLGNRQYEHFNKIAKV---------VDEILANQGAKRLVP 235 (687)
Q Consensus 173 G~~pdna~~F~~~L~~~~----~~~----~~l~~~~~aVFGlGds~Y~~f~~~ak~---------ld~~L~~lGa~~l~~ 235 (687)
...|.-.+.+++..-..- ..+ ..|.|+++.++..-+..-+.|...+.. +.-.+.-.|...+-+
T Consensus 80 ~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~ 159 (189)
T COG2249 80 YSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAPEEAYREGGGNFFEGVLLDPLYGTFHYCGLGWLPP 159 (189)
T ss_pred ccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCCHHHHhhcccCcccccccchhHHHHHHcCCccccc
Confidence 777787777777654321 111 469999988887655543444443332 223344456655555
Q ss_pred cccccCCCCcHHhHHHHHHHHHHHHHhh
Q 005624 236 VGLGDDDQCIEDDFSAWRELVWPELDNL 263 (687)
Q Consensus 236 ~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (687)
.-.+..+...++...+|.+++-..|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 187 (189)
T COG2249 160 FTFYGADVIDDETRAAYLERYRAHLKEI 187 (189)
T ss_pred eeEeecccCCHHHHHHHHHHHHHHHHhh
Confidence 5555555566888999998887766654
|
|
| >KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.75 E-value=0.26 Score=54.41 Aligned_cols=62 Identities=32% Similarity=0.545 Sum_probs=53.8
Q ss_pred EEeccCCch-H-----HHHHHHHHHHHHHHHcCCccccccccccCCC--CcHHhHHHHHHHHHHHHHhhh
Q 005624 203 VFGLGNRQY-E-----HFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 203 VFGlGds~Y-~-----~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~~~ 264 (687)
|||+||+.| + .|++-.|.+..+|.+++|..++++|+|+|.+ +....+..|--.||++|..-.
T Consensus 1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~~ 70 (638)
T KOG0560|consen 1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKGI 70 (638)
T ss_pred CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCCC
Confidence 699999998 3 6899999999999999999999999998854 466788899999999987644
|
|
| >KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.30 E-value=0.96 Score=49.66 Aligned_cols=186 Identities=10% Similarity=-0.030 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCcccCCCCccccccCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCC
Q 005624 57 ILTTSIAVLIGCVVVFILRRSSSSKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKA 136 (687)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~ 136 (687)
+.+.+..+++-.++++.+++... -+.....+. ....+++....-.-++|.=+=+.|-+-.||+.|++.+...+...
T Consensus 314 wk~d~pevil~gal~lhy~mikq--mkgvpgvk~--Er~~ea~evrhcalslVgepi~yp~in~f~k~lH~k~issflvt 389 (601)
T KOG1160|consen 314 WKMDAPEVILKGALYLHYNMIKQ--MKGVPGVKA--ERFEEAEEVRHCALSLVGEPIMYPEINPFAKLLHQKLISSFLVT 389 (601)
T ss_pred EecCCchhhhHHHHHHHHHHHHH--hhcCCCcCH--HHHHhhhhhhhheeeeecccccchhhhHHHHHHHhccchHHhcc
Confidence 34455677777788888876542 111111000 00011122223344677778889999999999999887654211
Q ss_pred ee----EEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcC---CCCCcCCceEEEEeccCC
Q 005624 137 IF----KVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE---GGEWLQKLKYGVFGLGNR 209 (687)
Q Consensus 137 ~v----~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~---~~~~l~~~~~aVFGlGds 209 (687)
+. ++.|+... ..=+-.+++.+=|.--|.+.+.-++||+|+.+... .+.+..-.|+++.|.||+
T Consensus 390 naq~pe~~rnvk~v----------tqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~lk~K~qrtvyRlTlVkg~n~ 459 (601)
T KOG1160|consen 390 NAQFPEDIRNVKPV----------TQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKALKKKQQRTVYRLTLVKGWNS 459 (601)
T ss_pred cccChHHHhchhhh----------heeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHHHHHhhcceEEEEEEeccccc
Confidence 10 11122111 11233456666667678899999999999976311 223455668999999998
Q ss_pred ch--HHHHHHHHHHHHHHHHcCCcccccccc---ccCCCCcHHhHHHHHHHH
Q 005624 210 QY--EHFNKIAKVVDEILANQGAKRLVPVGL---GDDDQCIEDDFSAWRELV 256 (687)
Q Consensus 210 ~Y--~~f~~~ak~ld~~L~~lGa~~l~~~g~---gD~~~~~e~~f~~W~~~l 256 (687)
.= ..||.+++-+-++++-+||+...+.-. -+.+....++|-++...|
T Consensus 460 dd~~Ayfnlv~rglp~fieVkGvty~ges~~s~lTm~nvp~~Ee~v~Fv~eL 511 (601)
T KOG1160|consen 460 DDLPAYFNLVSRGLPDFIEVKGVTYCGESELSNLTMTNVPWHEEVVEFVFEL 511 (601)
T ss_pred cccHHHHHHHhccCCceEEEeceeEecccccCcccccCccHHHHHHHHHHHH
Confidence 84 789999999999999999987654322 112233455555555544
|
|
| >PRK02261 methylaspartate mutase subunit S; Provisional | Back alignment and domain information |
|---|
Probab=81.07 E-value=41 Score=31.57 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=79.3
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
++-.|+-++--|..-.+...+...+-+.. .++++++-..-+. +++.+...+++.=+++.|.. .+..-..+..+.+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~---G~eVi~LG~~vp~-e~i~~~a~~~~~d~V~lS~~-~~~~~~~~~~~~~ 76 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEA---GFEVINLGVMTSQ-EEFIDAAIETDADAILVSSL-YGHGEIDCRGLRE 76 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHC---CCEEEECCCCCCH-HHHHHHHHHcCCCEEEEcCc-cccCHHHHHHHHH
Confidence 45567888888988888887777665432 2678888654332 34444555555545555554 4455566777777
Q ss_pred HHHhhcCCCCCcCCceEEEEec---cCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHH
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGL---GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVW 257 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGl---Gds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~ 257 (687)
.|++. .+.+.++.|=|- ++..+ ....+.|+++|...+|+-+.. .+++..|..+.|
T Consensus 77 ~L~~~-----~~~~~~i~vGG~~~~~~~~~-------~~~~~~l~~~G~~~vf~~~~~------~~~i~~~l~~~~ 134 (137)
T PRK02261 77 KCIEA-----GLGDILLYVGGNLVVGKHDF-------EEVEKKFKEMGFDRVFPPGTD------PEEAIDDLKKDL 134 (137)
T ss_pred HHHhc-----CCCCCeEEEECCCCCCccCh-------HHHHHHHHHcCCCEEECcCCC------HHHHHHHHHHHh
Confidence 77653 244555544442 12222 455567888999888876532 466777766554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 687 | ||||
| 3qfr_A | 618 | Crystal Structure Of Human Nadph-Cytochrome P450 Re | 1e-116 | ||
| 3qe2_A | 618 | Crystal Structure Of Human Nadph-Cytochrome P450 Re | 1e-116 | ||
| 1amo_A | 615 | Three-Dimensional Structure Of Nadph-Cytochrome P45 | 1e-115 | ||
| 3qfc_A | 618 | Crystal Structure Of Human Nadph-Cytochrome P450 (V | 1e-115 | ||
| 3es9_A | 618 | Nadph-Cytochrome P450 Reductase In An Open Conforma | 1e-115 | ||
| 1j9z_A | 622 | Cypor-W677g Length = 622 | 1e-114 | ||
| 1ja0_A | 620 | Cypor-W677x Length = 620 | 1e-114 | ||
| 1ja1_A | 622 | Cypor-Triple Mutant Length = 622 | 1e-114 | ||
| 3ojx_A | 622 | Disulfide Crosslinked Cytochrome P450 Reductase Ina | 1e-113 | ||
| 3fjo_A | 637 | Structure Of Chimeric Yh Cpr Length = 637 | 1e-103 | ||
| 3qfs_A | 458 | Crystal Structure Of Nadph-Cytochrome P450 Reductas | 2e-84 | ||
| 3qft_A | 458 | Crystal Structure Of Nadph-Cytochrome P450 Reductas | 8e-84 | ||
| 2bpo_A | 682 | Crystal Structure Of The Yeast Cpr Triple Mutant: D | 3e-72 | ||
| 2bf4_A | 682 | A Second Fmn-Binding Site In Yeast Nadph-Cytochrome | 2e-70 | ||
| 1tll_A | 688 | Crystal Structure Of Rat Neuronal Nitric-Oxide Synt | 2e-64 | ||
| 4dqk_A | 391 | Crystal Structure Of The Fad Binding Domain Of Cyto | 2e-54 | ||
| 4dql_A | 393 | Crystal Structure Of The Fad Binding Domain Of Cyto | 3e-54 | ||
| 2qtz_A | 539 | Crystal Structure Of The Nadp+-Bound Fad-Containing | 1e-50 | ||
| 1f20_A | 435 | Crystal Structure Of Rat Neuronal Nitric-Oxide Synt | 2e-50 | ||
| 2qtl_A | 539 | Crystal Structure Of The Fad-Containing Fnr-Like Mo | 3e-49 | ||
| 1ddg_A | 374 | Crystal Structure Of Sir-Fp60 Length = 374 | 2e-48 | ||
| 1b1c_A | 181 | Crystal Structure Of The Fmn-Binding Domain Of Huma | 5e-27 | ||
| 1bvy_F | 191 | Complex Of The Heme And Fmn-Binding Domains Of The | 6e-12 | ||
| 3hr4_A | 219 | Human Inos Reductase And Calmodulin Complex Length | 9e-12 | ||
| 3lvb_A | 311 | Crystal Structure Of The Ferredoxin:nadp+ Reductase | 1e-11 | ||
| 3lo8_A | 311 | Crystal Structure Of The Oxidized Form Of Ferredoxi | 1e-11 | ||
| 1jb9_A | 316 | Crystal Structure Of The Ferredoxin:nadp+ Reductase | 1e-11 | ||
| 3vo1_A | 314 | Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ | 2e-10 | ||
| 2b5o_A | 402 | Ferredoxin-nadp Reductase Length = 402 | 3e-10 | ||
| 3vo2_A | 310 | Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ | 4e-10 | ||
| 1gaq_A | 314 | Crystal Structure Of The Complex Between Ferredoxin | 7e-10 | ||
| 4af6_A | 308 | Pea Fnr L268v Mutant Length = 308 | 5e-09 | ||
| 3mhp_A | 296 | Fnr-Recruitment To The Thylakoid Length = 296 | 7e-09 | ||
| 1qga_A | 308 | Pea Fnr Y308w Mutant In Complex With Nadp+ Length = | 7e-09 | ||
| 1qg0_A | 308 | Wild-type Pea Fnr Length = 308 | 7e-09 | ||
| 1qfy_A | 308 | Pea Fnr Y308s Mutant In Complex With Nadp+ Length = | 7e-09 | ||
| 1w35_A | 304 | Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W) Leng | 3e-08 | ||
| 1sm4_A | 296 | Crystal Structure Analysis Of The Ferredoxin-Nadp+ | 4e-08 | ||
| 1fnb_A | 314 | Refined Crystal Structure Of Spinach Ferredoxin Red | 4e-08 | ||
| 1frq_A | 314 | Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta | 5e-08 | ||
| 1bx0_A | 314 | Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta | 5e-08 | ||
| 1bx1_A | 314 | Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta | 5e-08 | ||
| 1quf_A | 304 | X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+ | 5e-08 | ||
| 2x3u_A | 303 | Ferredoxin-Nadp Reductase Mutant With Tyr 303 Repla | 7e-08 | ||
| 1ewy_A | 303 | Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reduct | 7e-08 | ||
| 1e64_A | 304 | Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla | 8e-08 | ||
| 1frn_A | 314 | The Involvement Of Ser96 In The Catalytic Mechanism | 1e-07 | ||
| 1que_A | 303 | X-Ray Structure Of The Ferredoxin:nadp+ Reductase F | 1e-07 | ||
| 1gr1_A | 303 | Structure Of Ferredoxin-Nadp+ Reductase With Glu 13 | 1e-07 | ||
| 4af7_A | 308 | Pea Fnr C266m Mutant Length = 308 | 1e-07 | ||
| 1qgy_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla | 1e-07 | ||
| 1qh0_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutat | 1e-07 | ||
| 1w34_A | 304 | Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Lengt | 1e-07 | ||
| 1e63_A | 304 | Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla | 1e-07 | ||
| 1go2_A | 304 | Structure Of Ferredoxin-nadp+ Reductase With Lys 72 | 1e-07 | ||
| 1b2r_A | 304 | Ferredoxin-Nadp+ Reductase (Mutation: E 301 A) Leng | 1e-07 | ||
| 1ogj_A | 303 | Ferredoxin:nadp+ Reductase Mutant With Leu 263 Repl | 1e-07 | ||
| 1gjr_A | 304 | Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By | 1e-07 | ||
| 1e62_A | 304 | Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla | 1e-07 | ||
| 1bjk_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Arg 264 Repl | 1e-07 | ||
| 1qgz_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Leu 78 Repla | 1e-07 | ||
| 1bqe_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl | 2e-07 | ||
| 2bsa_A | 303 | Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Compl | 2e-07 | ||
| 1h85_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Val 136 Repl | 2e-07 | ||
| 2xnc_A | 315 | Crystal Structure Of An Engineered Ferredoxin Nadp | 2e-07 | ||
| 2vyq_A | 304 | Ferredoxin:nadp Reductase Mutant With Thr 155 Repla | 3e-07 | ||
| 1ogi_A | 303 | Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl | 4e-07 | ||
| 1h42_A | 304 | Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl | 5e-07 | ||
| 2bmw_A | 304 | Ferredoxin: Nadp+reductase Mutant With Thr 155 Repl | 5e-07 | ||
| 2rc5_A | 314 | Refined Structure Of Fnr From Leptospira Interrogan | 1e-06 | ||
| 1ykg_A | 167 | Solution Structure Of The Flavodoxin-Like Domain Fr | 3e-06 | ||
| 3jqq_A | 316 | Crystal Structure Of The H286k Mutant Of Ferredoxin | 9e-05 | ||
| 3jqp_A | 316 | Crystal Structure Of The H286l Mutant Of Ferredoxin | 1e-04 | ||
| 2ok7_A | 316 | Ferredoxin-Nadp+ Reductase From Plasmodium Falcipar | 1e-04 | ||
| 2hna_A | 147 | Solution Structure Of A Bacterial Apo-Flavodoxin Le | 7e-04 |
| >pdb|3QFR|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase (R457h Mutant) Length = 618 | Back alignment and structure |
|
| >pdb|3QE2|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase Length = 618 | Back alignment and structure |
|
| >pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cytochrome P450 Reductase: Prototype For Fmn-And Fad-Containing Enzymes Length = 615 | Back alignment and structure |
|
| >pdb|3QFC|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e Mutant) Length = 618 | Back alignment and structure |
|
| >pdb|3ES9|A Chain A, Nadph-Cytochrome P450 Reductase In An Open Conformation Length = 618 | Back alignment and structure |
|
| >pdb|1J9Z|A Chain A, Cypor-W677g Length = 622 | Back alignment and structure |
|
| >pdb|1JA0|A Chain A, Cypor-W677x Length = 620 | Back alignment and structure |
|
| >pdb|1JA1|A Chain A, Cypor-Triple Mutant Length = 622 | Back alignment and structure |
|
| >pdb|3OJX|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive Length = 622 | Back alignment and structure |
|
| >pdb|3FJO|A Chain A, Structure Of Chimeric Yh Cpr Length = 637 | Back alignment and structure |
|
| >pdb|3QFS|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase (FadNADPH Domain) Length = 458 | Back alignment and structure |
|
| >pdb|3QFT|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase (FadNADPH DOMAIN And R457h Mutant) Length = 458 | Back alignment and structure |
|
| >pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g, Y75f, K78a. Length = 682 | Back alignment and structure |
|
| >pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450 Reductase Suggests A Novel Mechanism Of Electron Transfer By Diflavin Reductases. Length = 682 | Back alignment and structure |
|
| >pdb|1TLL|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase Reductase Module At 2.3 A Resolution. Length = 688 | Back alignment and structure |
|
| >pdb|4DQK|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome P450 Bm3 Length = 391 | Back alignment and structure |
|
| >pdb|4DQL|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome P450 Bm3 In Complex With Nadp+ Length = 393 | Back alignment and structure |
|
| >pdb|2QTZ|A Chain A, Crystal Structure Of The Nadp+-Bound Fad-Containing Fnr-Like Module Of Human Methionine Synthase Reductase Length = 539 | Back alignment and structure |
|
| >pdb|1F20|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase FadNADP+ Domain At 1.9a Resolution Length = 435 | Back alignment and structure |
|
| >pdb|2QTL|A Chain A, Crystal Structure Of The Fad-Containing Fnr-Like Module Of Human Methionine Synthase Reductase Length = 539 | Back alignment and structure |
|
| >pdb|1DDG|A Chain A, Crystal Structure Of Sir-Fp60 Length = 374 | Back alignment and structure |
|
| >pdb|1B1C|A Chain A, Crystal Structure Of The Fmn-Binding Domain Of Human Cytochrome P450 Reductase At 1.93a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|1BVY|F Chain F, Complex Of The Heme And Fmn-Binding Domains Of The Cytochrome P450(Bm-3) Length = 191 | Back alignment and structure |
|
| >pdb|3HR4|A Chain A, Human Inos Reductase And Calmodulin Complex Length = 219 | Back alignment and structure |
|
| >pdb|3LVB|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From Maize Root At 1.7 Angstroms - Test Set Withheld Length = 311 | Back alignment and structure |
|
| >pdb|3LO8|A Chain A, Crystal Structure Of The Oxidized Form Of Ferredoxin:nadp+ Reductase From Maize Root At 1.05 Angstroms Length = 311 | Back alignment and structure |
|
| >pdb|1JB9|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From Maize Root At 1.7 Angstroms Length = 316 | Back alignment and structure |
|
| >pdb|3VO1|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ Reductase Ii Length = 314 | Back alignment and structure |
|
| >pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase Length = 402 | Back alignment and structure |
|
| >pdb|3VO2|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ Reductase Iii Length = 310 | Back alignment and structure |
|
| >pdb|1GAQ|A Chain A, Crystal Structure Of The Complex Between Ferredoxin And Ferredoxin-Nadp+ Reductase Length = 314 | Back alignment and structure |
|
| >pdb|4AF6|A Chain A, Pea Fnr L268v Mutant Length = 308 | Back alignment and structure |
|
| >pdb|3MHP|A Chain A, Fnr-Recruitment To The Thylakoid Length = 296 | Back alignment and structure |
|
| >pdb|1QGA|A Chain A, Pea Fnr Y308w Mutant In Complex With Nadp+ Length = 308 | Back alignment and structure |
|
| >pdb|1QG0|A Chain A, Wild-type Pea Fnr Length = 308 | Back alignment and structure |
|
| >pdb|1QFY|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadp+ Length = 308 | Back alignment and structure |
|
| >pdb|1W35|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W) Length = 304 | Back alignment and structure |
|
| >pdb|1SM4|A Chain A, Crystal Structure Analysis Of The Ferredoxin-Nadp+ Reductase From Paprika Length = 296 | Back alignment and structure |
|
| >pdb|1FNB|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'- Phospho-5'-Amp Bound States Length = 314 | Back alignment and structure |
|
| >pdb|1FRQ|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312a Length = 314 | Back alignment and structure |
|
| >pdb|1BX0|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312l Length = 314 | Back alignment and structure |
|
| >pdb|1BX1|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312q Length = 314 | Back alignment and structure |
|
| >pdb|1QUF|A Chain A, X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+ Reductase From The Cyanobacterium Anabaena Pcc 7119 At 2.25 Angstroms Length = 304 | Back alignment and structure |
|
| >pdb|2X3U|A Chain A, Ferredoxin-Nadp Reductase Mutant With Tyr 303 Replaced By Phe (Y303f) Length = 303 | Back alignment and structure |
|
| >pdb|1EWY|A Chain A, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase Complex Length = 303 | Back alignment and structure |
|
| >pdb|1E64|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Gln (K75q) Length = 304 | Back alignment and structure |
|
| >pdb|1FRN|A Chain A, The Involvement Of Ser96 In The Catalytic Mechanism Of Ferredoxin-Nadp+ Reductase: Structure-Function Relationship As Studied By Site-Directed Mutagenesis And X- Ray Crystallography Length = 314 | Back alignment and structure |
|
| >pdb|1QUE|A Chain A, X-Ray Structure Of The Ferredoxin:nadp+ Reductase From The Cyanobacterium Anabaena Pcc 7119 At 1.8 Angstroms Length = 303 | Back alignment and structure |
|
| >pdb|1GR1|A Chain A, Structure Of Ferredoxin-Nadp+ Reductase With Glu 139 Replaced By Lys (E139k) Length = 303 | Back alignment and structure |
|
| >pdb|4AF7|A Chain A, Pea Fnr C266m Mutant Length = 308 | Back alignment and structure |
|
| >pdb|1QGY|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Glu (K75e) Length = 295 | Back alignment and structure |
|
| >pdb|1QH0|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutated By Asp And Leu 78 Mutated By Asp Length = 295 | Back alignment and structure |
|
| >pdb|1W34|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Length = 304 | Back alignment and structure |
|
| >pdb|1E63|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Ser (K75s) Length = 304 | Back alignment and structure |
|
| >pdb|1GO2|A Chain A, Structure Of Ferredoxin-nadp+ Reductase With Lys 72 Replaced By Glu (k72e) Length = 304 | Back alignment and structure |
|
| >pdb|1B2R|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: E 301 A) Length = 304 | Back alignment and structure |
|
| >pdb|1OGJ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 263 Replaced By Pro (L263p) Length = 303 | Back alignment and structure |
|
| >pdb|1GJR|A Chain A, Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By Cocrystallization Length = 304 | Back alignment and structure |
|
| >pdb|1E62|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Arg (K75r) Length = 304 | Back alignment and structure |
|
| >pdb|1BJK|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Arg 264 Replaced By Glu (r264e) Length = 295 | Back alignment and structure |
|
| >pdb|1QGZ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 78 Replaced By Asp (L78d) Length = 295 | Back alignment and structure |
|
| >pdb|1BQE|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly (T155g) Length = 295 | Back alignment and structure |
|
| >pdb|2BSA|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Complexed With Nadp Length = 303 | Back alignment and structure |
|
| >pdb|1H85|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Val 136 Replaced By Leu (V136l) Length = 295 | Back alignment and structure |
|
| >pdb|2XNC|A Chain A, Crystal Structure Of An Engineered Ferredoxin Nadp Reductase (Fnr) From Pisum Sativum Length = 315 | Back alignment and structure |
|
| >pdb|2VYQ|A Chain A, Ferredoxin:nadp Reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro And Tyr 303 Replaced By Ser (T155g-A160t-L263p-Y303s) Length = 304 | Back alignment and structure |
|
| >pdb|1OGI|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly And Ala 160 Replaced By Thr (T155g-A160t) Length = 303 | Back alignment and structure |
|
| >pdb|1H42|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr And Leu 263 Replaced By Pro (T155g-A160t-L263p) Length = 304 | Back alignment and structure |
|
| >pdb|2BMW|A Chain A, Ferredoxin: Nadp+reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro, Arg 264 Replaced By Pro And Gly 265 Replaced By Pro (T155g- A160t-L263p-R264p-G265p) Length = 304 | Back alignment and structure |
|
| >pdb|2RC5|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans Length = 314 | Back alignment and structure |
|
| >pdb|1YKG|A Chain A, Solution Structure Of The Flavodoxin-Like Domain From The Escherichia Coli Sulfite Reductase Length = 167 | Back alignment and structure |
|
| >pdb|3JQQ|A Chain A, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum In Complex With 2'p- Amp Length = 316 | Back alignment and structure |
|
| >pdb|3JQP|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With 2'p-Amp Length = 316 | Back alignment and structure |
|
| >pdb|2OK7|A Chain A, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With 2'p-Amp Length = 316 | Back alignment and structure |
|
| >pdb|2HNA|A Chain A, Solution Structure Of A Bacterial Apo-Flavodoxin Length = 147 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A* Length = 618 | Back alignment and structure |
|---|
Score = 764 bits (1976), Expect = 0.0
Identities = 220/619 (35%), Positives = 336/619 (54%), Gaps = 44/619 (7%)
Query: 99 EVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLK 158
++ + + +F+G+QTGTAE FA L+ +A + D ++Y + ++
Sbjct: 13 KMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRG--MSADPEEYDLADLSSLPEID 70
Query: 159 KENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIA 218
+V F +ATYG+G+PTDNA FY W E L +K+ VFGLGN+ YEHFN +
Sbjct: 71 -NALVVFCMATYGEGDPTDNAQDFYDWLQETDV---DLSGVKFAVFGLGNKTYEHFNAMG 126
Query: 219 KVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYT 278
K VD+ L GA+R+ +GLGDDD +E+DF WRE W + + S
Sbjct: 127 KYVDKRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWLAVCEHFGVEATGEESSIR-Q 185
Query: 279 AAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHL 338
+ + + + N +DA++P + V ++L ++R HL
Sbjct: 186 YELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKL-NQGTERHLMHL 244
Query: 339 EFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 398
E DI+ + + YE+GDHV VY N S V + +LG D SL+ E+
Sbjct: 245 ELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNKK----- 299
Query: 399 PPTFPPCSLRTALTKYADLLSSPK------------------------------KDEYAQ 428
P P S RTALT Y D+ + P+ K+ Y
Sbjct: 300 HPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLS 359
Query: 429 WIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVY 488
W+V ++R +L ++ + PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ +V
Sbjct: 360 WVVEARRHILAILQDCPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVVVE 418
Query: 489 EKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGL 548
+T GR++KG+ + W++ P+ ++ + P+FVR+S F+LP A P+IM+GPGTG+
Sbjct: 419 YETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGV 478
Query: 549 APFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 608
APF GF+QER L++ G E+G +LL++GCR DY+Y +EL F + GAL+QL VAFSR
Sbjct: 479 APFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSR 538
Query: 609 EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 668
E K YVQH + + +W ++ GA++YVCGDA++MARDV T + IV E G+++ ++
Sbjct: 539 EQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQ 598
Query: 669 AESMVKNLQMTGRYLRDVW 687
A +K L GRY DVW
Sbjct: 599 AVDYIKKLMTKGRYSLDVW 617
|
| >1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4 Length = 688 | Back alignment and structure |
|---|
Score = 694 bits (1793), Expect = 0.0
Identities = 182/662 (27%), Positives = 291/662 (43%), Gaps = 96/662 (14%)
Query: 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIV 163
+ K TI + T+TG ++ +AK L + + +D K + +++Y L+ E +V
Sbjct: 11 RVKATILYATETGKSQAYAKTLCEIFKHAFDA---KAMSMEEYDIVH------LEHEALV 61
Query: 164 FFFLATYGDGEPTDNAARFYKWFTEQK--------------------------------- 190
+T+G+G+P +N +F E +
Sbjct: 62 LVVTSTFGNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGP 121
Query: 191 ------EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC 244
E L +++ VFGLG+R Y HF VD +L G +R++ + GD+
Sbjct: 122 DLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDELCG 181
Query: 245 IEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNA 304
E+ F W + V+ ++ DD + P + IS R + + ++
Sbjct: 182 QEEAFRTWAKKVFKAACDVFCVGDD-VNIEKPNNSLISNDRSWKRNKFRLTYVAEAPDLT 240
Query: 305 NGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCENLS 363
G + + + + R+ L +P S RS + G L Y+ GDH+GV+ N
Sbjct: 241 QGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHE 300
Query: 364 ETVEEALSLLGLSPD--TYFSLHTDKEDGTPLG---KSTLPPTFPPCSLRTALTKYADLL 418
+ V + L +P + +E T LG PPC++ A Y D+
Sbjct: 301 DLVNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDIT 360
Query: 419 SSPK--------------------------KDEYAQWIVASQRSLLEVMSEFPSAKPPLG 452
+ P EY +W +++EV+ EFPS + P
Sbjct: 361 TPPTPLQLQQFASLATNEKEKQRLLVLSKGLQEYEEWKWGKNPTMVEVLEEFPSIQMPAT 420
Query: 453 VFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGLCSTWMKNSLP 510
+ + LQPRYYSISSSP + P +H+T A+V T G VH G+CS+W+
Sbjct: 421 LLLTQL-SLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQA 479
Query: 511 MEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFA-LQEAGAEL 568
P FVR + +F LP + +VP I++GPGTG+APFR F Q+R +Q G
Sbjct: 480 ------DDVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNP 533
Query: 569 GPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSRE-GPTKEYVQHKMMEKSSD- 626
P +L FGCR K+D+IY +E G +L A+SRE K+YVQ + E+ ++
Sbjct: 534 CPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAES 593
Query: 627 IWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRD 685
++ L E G ++YVCGD MA DV + + I+ +QG L A + L+ RY D
Sbjct: 594 VYRALKEQGGHIYVCGDVT-MAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHED 652
Query: 686 VW 687
++
Sbjct: 653 IF 654
|
| >2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A* Length = 682 | Back alignment and structure |
|---|
Score = 690 bits (1781), Expect = 0.0
Identities = 187/661 (28%), Positives = 309/661 (46%), Gaps = 84/661 (12%)
Query: 94 KEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEY 153
++ V + + + + +QTGTAEGFAKA + E A+++ + D+++Y ++
Sbjct: 39 RDIAQVVTENNKNYLVLYASQTGTAEGFAKAFSKELVAKFNLNV-MCADVENY-----DF 92
Query: 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEH 213
E IV F++TYG+G+ D A F + + G L L+Y +FGLGN YE
Sbjct: 93 ESLNDVPVIVSIFISTYGEGDFPDGAVNFEDFICNAEAG--ALSNLRYNMFGLGNSTYEF 150
Query: 214 FNKIAKVVDEILANQGAKRLVPVGLGDDDQC-IEDDFSAWRELVWPELDNLLRDDDDPTT 272
FN AK ++ L+ GA RL +G DD ++D+ AW++ + L + L D+
Sbjct: 151 FNGAAKKAEKHLSAAGAIRLGKLGEADDGAGTTDEDYMAWKDSILEVLKDELHLDEQEAK 210
Query: 273 VSTPYTAAISEYRVVFYDNADASVGE------KSWGNANGHAVYDAQHPCRSNVAVRKEL 326
++ + + + S + +D P + + +EL
Sbjct: 211 FTSQFQYTVLNEITDSMSLGEPSAHYLPSHQLNRNADGIQLGPFDLSQPYIAPIVKSREL 270
Query: 327 HTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTD 386
+ + DR+C H EFD++G+ + Y TGDH+ V+ N E VE+ LS+ L P+T F L
Sbjct: 271 FSSN-DRNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLK-- 327
Query: 387 KEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPK------------------------ 422
PL + P P ++ A+ Y ++
Sbjct: 328 -----PLDPTVKVPFPTPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLS 382
Query: 423 --KDEYAQWIVASQRSLLEVMSEFPSAKPPLGV---FFAAIVPRLQPRYYSISSSPRVAP 477
KD++A I + ++ + + V F VP++ PRYYSISSS
Sbjct: 383 KDKDQFAVEITSKYFNIADALKYLSDGAKWDTVPMQFLVESVPQMTPRYYSISSSSLSEK 442
Query: 478 SRIHVTCALVYEKTPT---GRVHKGLCSTWMKNSLPMEKSNDCSW--------------- 519
+HVT + P G+ + ++N + + + +
Sbjct: 443 QTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNGPRKL 502
Query: 520 -----APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAE------L 568
P+ VR+SNF+LP++ P+IMIGPGTG+APFRGF++ER A E+ + L
Sbjct: 503 FANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSL 562
Query: 569 GPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQLIVAFSR-EGPTKEYVQHKMMEKSSD 626
G +LF+G RN D++Y+DE + + +++VA SR K YVQ K+ +
Sbjct: 563 GKHILFYGSRNTD-DFLYQDEWPEYAKKLDGSFEMVVAHSRLPNTKKVYVQDKLKDYEDQ 621
Query: 627 IWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDV 686
++ M++ GA++YVCGDAK MA+ V L I+ S+ + +A ++K L+ +GRY DV
Sbjct: 622 VFEMINNGAFIYVCGDAKGMAKGVSTALVGILSRGKSITTDEATELIKMLKTSGRYQEDV 681
Query: 687 W 687
W
Sbjct: 682 W 682
|
| >3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A* Length = 458 | Back alignment and structure |
|---|
Score = 602 bits (1554), Expect = 0.0
Identities = 164/461 (35%), Positives = 254/461 (55%), Gaps = 42/461 (9%)
Query: 262 NLLRDDDDPTTVSTPYTAAISEYRVVFYDNADAS---VGE--KSWGNANGHAVYDAQHPC 316
+ V +I +Y +V + + DA+ +GE + N +DA++P
Sbjct: 4 SHHHHHHSSGLVPRGSHMSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPF 63
Query: 317 RSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS 376
+ V ++L ++R HLE DI+ + + YE+GDHV VY N S V + +LG
Sbjct: 64 LAAVTTNRKL-NQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGAD 122
Query: 377 PDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPK-------------- 422
D SL+ E+ P P S RTALT Y D+ + P+
Sbjct: 123 LDVVMSLNNLDEESNKK-----HPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEP 177
Query: 423 ----------------KDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRY 466
K+ Y W+V ++R +L ++ + PS +PP+ ++PRLQ RY
Sbjct: 178 SEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPID-HLCELLPRLQARY 236
Query: 467 YSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 526
YSI+SS +V P+ +H+ +V +T GR++KG+ + W++ P+ ++ + P+FVR+
Sbjct: 237 YSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRK 296
Query: 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIY 586
S F+LP A P+IM+GPGTG+APF GF+QER L++ G E+G +LL++GCR DY+Y
Sbjct: 297 SQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLY 356
Query: 587 EDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSM 646
+EL F + GAL+QL VAFSRE K YVQH + + +W ++ GA++YVCGDA++M
Sbjct: 357 REELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNM 416
Query: 647 ARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
ARDV T + IV E G+++ ++A +K L GRY DVW
Sbjct: 417 ARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 457
|
| >2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A* Length = 539 | Back alignment and structure |
|---|
Score = 581 bits (1499), Expect = 0.0
Identities = 144/545 (26%), Positives = 240/545 (44%), Gaps = 63/545 (11%)
Query: 198 KLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVW 257
++G + + + + + I + R G D + ++ ++ + V
Sbjct: 2 SPEFGALPVASPASLRTDLVKSELLHIESQVELLRFDDSGRKDSEVLKQNAVNSNQSNVV 61
Query: 258 PEL--DNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHP 315
E +L R + S EY V + E + +V A
Sbjct: 62 IEDFESSLTRSVPPLSQASLNIPGLPPEYLQVH-------LQESLGQEESQVSVTSADPV 114
Query: 316 CRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGL 375
+ ++ +L T + ++ +E DI+ T +Y+ GD V C N V+ L L L
Sbjct: 115 FQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQL 174
Query: 376 SPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKK----------- 423
+ + T +TLP P CSL+ T ++ + PKK
Sbjct: 175 EDKREHCVLLKIKADTKKKGATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTS 234
Query: 424 -----------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRY 466
+Y++++ + LL+++ FPS +PPL + + P+LQPR
Sbjct: 235 DSAEKRRLQELCSKQGAADYSRFVRDACACLLDLLLAFPSCQPPLSLLLEHL-PKLQPRP 293
Query: 467 YSISSSPRVAPSRIHVTCALVYEKTP--TGRVHKGLCSTWMKNSLPMEKSNDCSWA---- 520
YS +SS P ++H +V + T + KG+C+ W+ + + +
Sbjct: 294 YSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDS 353
Query: 521 --------PIFVRQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAE--LG 569
IF R +N F LP D +PIIM+GPGTG+APF GFLQ R LQE + G
Sbjct: 354 GKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFG 413
Query: 570 PSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT------KEYVQHKMMEK 623
LFFGCR++ DY++ EL +F++ G L+ L V+FSR+ P +YVQ +
Sbjct: 414 AMWLFFGCRHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQLH 473
Query: 624 SSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRY 682
+ + L E ++YVCGDAK+MA+DVH L I+ ++ ++ +A + L+ RY
Sbjct: 474 GQQVARILLQENGHIYVCGDAKNMAKDVHDALVQIISKEVGVEKLEAMKTLATLKEEKRY 533
Query: 683 LRDVW 687
L+D+W
Sbjct: 534 LQDIW 538
|
| >4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A* Length = 393 | Back alignment and structure |
|---|
Score = 524 bits (1351), Expect = 0.0
Identities = 127/403 (31%), Positives = 190/403 (47%), Gaps = 41/403 (10%)
Query: 312 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALS 371
+NV KEL P S RS HLE ++ +Y+ GDH+GV N V +
Sbjct: 3 MHGAFSTNVVASKELQQPGSARSTRHLEIELPKEA-SYQEGDHLGVIPRNYEGIVNRVTA 61
Query: 372 LLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPK--------- 422
GL L ++E L L +Y +L
Sbjct: 62 RFGLDASQQIRLEAEEEKLAHLP-------LAKTVSVEELLQYVELQDPVTRTQLRAMAA 114
Query: 423 ----------------KDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRY 466
K Y + ++A + ++LE++ ++P+ + F A + P ++PRY
Sbjct: 115 KTVCPPHKVELEALLEKQAYKEQVLAKRLTMLELLEKYPACEMKFSEFIALL-PSIRPRY 173
Query: 467 YSISSSPRVAPSRIHVTCALVYEKTPTGR-VHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525
YSISSSPRV + +T ++V + +G +KG+ S ++ D I
Sbjct: 174 YSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQE----GDTITCFISTP 229
Query: 526 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYI 585
QS F LP D + P+IM+GPGTG+APFRGF+Q R L+E G LG + L+FGCR+ DY+
Sbjct: 230 QSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYL 289
Query: 586 YEDELNNFVQSGALSQLIVAFSRE-GPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAK 644
Y++EL N G ++ L AFSR K YVQH M + + +L +GA+ Y+CGD
Sbjct: 290 YQEELENAQSEGIIT-LHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGS 348
Query: 645 SMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
MA V TL + + + A ++ L+ GRY +DVW
Sbjct: 349 QMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVW 391
|
| >1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4 Length = 435 | Back alignment and structure |
|---|
Score = 524 bits (1353), Expect = 0.0
Identities = 135/445 (30%), Positives = 206/445 (46%), Gaps = 55/445 (12%)
Query: 282 SEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 341
+++R+ + A G + + + + R+ L +P S RS +
Sbjct: 5 NKFRLTYVAEAPDL--------TQGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLH 56
Query: 342 IAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLSPD--TYFSLHTDKEDGTPLGK--- 395
G L Y+ GDH+GV+ N + V + L +P + +E T LG
Sbjct: 57 TNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNTALGVISN 116
Query: 396 STLPPTFPPCSLRTALTKYADLLSSPK--------------------------KDEYAQW 429
PPC++ A Y D+ + P EY +W
Sbjct: 117 WKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQEYEEW 176
Query: 430 IVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYE 489
+++EV+ EFPS + P + + LQPRYYSISSSP + P +H+T A+V
Sbjct: 177 KWGKNPTMVEVLEEFPSIQMPATLLLT-QLSLLQPRYYSISSSPDMYPDEVHLTVAIVSY 235
Query: 490 KTPT--GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGT 546
T G VH G+CS+W+ P FVR + +F LP + +VP I++GPGT
Sbjct: 236 HTRDGEGPVHHGVCSSWLNRIQA------DDVVPCFVRGAPSFHLPRNPQVPCILVGPGT 289
Query: 547 GLAPFRGFLQER-FALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 605
G+APFR F Q+R F +Q G P +L FGCR K+D+IY +E G +L A
Sbjct: 290 GIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTA 349
Query: 606 FSRE-GPTKEYVQHKMMEKSSD-IWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQEQG 662
+SRE K+YVQ + E+ ++ ++ L E G ++YVCGD MA DV + + I+ +QG
Sbjct: 350 YSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVT-MAADVLKAIQRIMTQQG 408
Query: 663 SLDSSKAESMVKNLQMTGRYLRDVW 687
L A + L+ RY D++
Sbjct: 409 KLSEEDAGVFISRLRDDNRYHEDIF 433
|
| >1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A* Length = 374 | Back alignment and structure |
|---|
Score = 520 bits (1341), Expect = 0.0
Identities = 117/389 (30%), Positives = 207/389 (53%), Gaps = 27/389 (6%)
Query: 308 AVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVE 367
+ Y P ++++V +++ +S++ H+E D+ +GL Y+ GD +GV+ +N V+
Sbjct: 4 SPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVK 63
Query: 368 EALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPK---- 422
E + LL L D ++ PL ++ L F + + YA L S
Sbjct: 64 ELVELLWLKGDEPVTVEGKT---LPLNEA-LQWHFELTVNTANIVENYATLTRSETLLPL 119
Query: 423 ---KDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSR 479
K + + A+ +++++ F A+ ++ L PR YSI+SS +
Sbjct: 120 VGDKAKLQHY--AATTPIVDMV-RFSPAQLDAEALIN-LLRPLTPRLYSIASSQAEVENE 175
Query: 480 IHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVP 538
+HVT +V GR G S+++ + + E +F+ + NF+LPA+ + P
Sbjct: 176 VHVTVGVVRYDVE-GRARAGGASSFLADRVEEE-----GEVRVFIEHNDNFRLPANPETP 229
Query: 539 IIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 598
+IMIGPGTG+APFR F+Q+R A G + LFFG + D++Y+ E +V+ G
Sbjct: 230 VIMIGPGTGIAPFRAFMQQR----AADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGV 285
Query: 599 LSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 658
L+++ +A+SR+ K YVQ K+ E+ +++W +++GA++YVCGDA MA+DV + L ++
Sbjct: 286 LTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVI 345
Query: 659 QEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
E G +D+ A+ + L++ RY RDV+
Sbjct: 346 AEFGGMDTEAADEFLSELRVERRYQRDVY 374
|
| >3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A* Length = 311 | Back alignment and structure |
|---|
Score = 321 bits (824), Expect = e-105
Identities = 74/302 (24%), Positives = 113/302 (37%), Gaps = 27/302 (8%)
Query: 401 TFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVP 460
T+ P TA + L PK IV + P G
Sbjct: 22 TYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGA 81
Query: 461 RLQPRYYSISSSPRVAPSRIHVTCALV----YEKTPT---GRVHKGLCSTWMKNSLPMEK 513
R YSI+S+ V Y T G+CS ++ NS P +K
Sbjct: 82 PQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDK 141
Query: 514 SNDCSWAPIFVRQS-NFKLPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAEL-GP 570
+ LP D IMI GTG+APFRG+L+ F G
Sbjct: 142 I------QLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGL 195
Query: 571 SLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSS 625
+ LF G N +Y++E ++++ + A SRE K YVQ K+ E S
Sbjct: 196 AWLFLGVANSD-SLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSD 254
Query: 626 DIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRD 685
+I+ +L GA++Y CG K M + TL + + +G + + L+ ++ +
Sbjct: 255 EIFKLLDGGAHIYFCGL-KGMMPGIQDTLKKVAERRG----ESWDQKLAQLKKNKQWHVE 309
Query: 686 VW 687
V+
Sbjct: 310 VY 311
|
| >1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A* Length = 314 | Back alignment and structure |
|---|
Score = 317 bits (814), Expect = e-103
Identities = 57/256 (22%), Positives = 102/256 (39%), Gaps = 24/256 (9%)
Query: 443 EFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRVHKG 499
E S + R YSI+SS + + + G KG
Sbjct: 72 EGQSVGVIPD-GEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKG 130
Query: 500 LCSTWMKNSLPMEKSNDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQER 558
+CS ++ + P + + +P D IIM+G GTG+APFR FL +
Sbjct: 131 VCSNFLCDLKPGAEV------KLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKM 184
Query: 559 FALQEAGAEL-GPSLLFFGCRNRKMDYIYEDELNNFVQSGALS-QLIVAFSREGPT---- 612
F + + G + LF G +Y++E + + +L A SRE
Sbjct: 185 FFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGE 243
Query: 613 KEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAES 671
K Y+Q +M + + ++W ML + Y+Y+CG K M + + + ++ +G
Sbjct: 244 KMYIQTRMAQYAVELWEMLKKDNTYVYMCG-LKGMEKGIDDIMVSLAAAEG----IDWIE 298
Query: 672 MVKNLQMTGRYLRDVW 687
+ L+ ++ +V+
Sbjct: 299 YKRQLKKAEQWNVEVY 314
|
| >2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A* Length = 314 | Back alignment and structure |
|---|
Score = 317 bits (813), Expect = e-103
Identities = 54/258 (20%), Positives = 91/258 (35%), Gaps = 24/258 (9%)
Query: 441 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP---RVAPSRIHVTCALVYEKTPTGRVH 497
P + P R YSI+S + I G +
Sbjct: 70 GGVIPPGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQ 129
Query: 498 -KGLCSTWMKNSLPMEKSNDCSWAPIFVR-QSNFKLP-ADAKVPIIMIGPGTGLAPFRGF 554
KG+CS +M + P ++ + F LP D I+ + GTG+APF G
Sbjct: 130 FKGVCSNYMCDLKPGDEV------TMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGM 183
Query: 555 LQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP--- 611
+E + G L +G + + D L +LI A SRE
Sbjct: 184 SEELLEHKLIKFT-GNITLVYGAPYSD-ELVMMDYLKGLESKHKNFKLITAISREEKNSF 241
Query: 612 --TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 669
+ Y+ H++ E++ + +L+ G Y+CG K M + V + I G+
Sbjct: 242 DGGRMYISHRVREQAEAVKKILNGGGRFYICGGPKGMEKGVIEEIQKISGNTGT-----Y 296
Query: 670 ESMVKNLQMTGRYLRDVW 687
E +L+ + + +
Sbjct: 297 EEFKHHLEGAHQLFVETY 314
|
| >2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ... Length = 304 | Back alignment and structure |
|---|
Score = 313 bits (805), Expect = e-102
Identities = 61/297 (20%), Positives = 107/297 (36%), Gaps = 30/297 (10%)
Query: 407 LRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRY 466
+ L+ L+ E S + R
Sbjct: 22 FIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLK-YIEGQSIGIIP-PGVDKNGKPEKLRL 79
Query: 467 YSISSSP---RVAPSRIHVTCALV-YEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 522
YSI+S+ V I + + Y+ +G G+CST++ + P + I
Sbjct: 80 YSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSE------VKI 133
Query: 523 FVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAEL-----GPSLLFFG 576
LP D + +IM+ GTG+ P R +L F E A G S L FG
Sbjct: 134 TGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFG 193
Query: 577 CRNRKMDYIYEDELNNFVQSGALS-QLIVAFSREGP----TKEYVQHKMMEKSSDIWNML 631
+ +Y++EL Q + +L A SRE + Y+Q ++ E + +W ++
Sbjct: 194 VPTTP-NILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLI 252
Query: 632 -SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
++ + Y+CG M + L ++G K+L+ GR+ + +
Sbjct: 253 KNQKTHTYICGPPP-MEEGIDAALSAAAAKEG----VTWSDYQKDLKKAGRWHVETY 304
|
| >2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP} Length = 402 | Back alignment and structure |
|---|
Score = 297 bits (762), Expect = 1e-94
Identities = 61/293 (20%), Positives = 109/293 (37%), Gaps = 25/293 (8%)
Query: 407 LRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRY 466
+ +L+ L + P + R
Sbjct: 123 FLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIP--PGEDKNGKPHKLRL 180
Query: 467 YSISSSPR---VAPSRIHVTCALV-YEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 522
YSI+S+ + + + Y+ +G G+CST++ N I
Sbjct: 181 YSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPV-----GTDDVKI 235
Query: 523 FV-RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ-EAGAELGPSLLFFGCRNR 580
LP D ++M+ GTG+APFR FL F Q E G + L FG
Sbjct: 236 TGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYT 295
Query: 581 KMDYIYEDELNNFVQSGALS-QLIVAFSREGPT----KEYVQHKMMEKSSDIWNMLSE-G 634
+ +Y+D+ + +L A SRE T K YVQ ++ E + +++ M+ +
Sbjct: 296 A-NILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELFEMIQKPN 354
Query: 635 AYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
++Y+CG K M + T +++G E M ++++ R+ +V+
Sbjct: 355 THVYMCGL-KGMQPPIDETFTAEAEKRG----LNWEEMRRSMKKEHRWHVEVY 402
|
| >2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP} Length = 402 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 4e-05
Identities = 27/194 (13%), Positives = 43/194 (22%), Gaps = 31/194 (15%)
Query: 168 ATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILAN 227
+T A R + + G + V G + +
Sbjct: 6 STANSTGNQSYANRLFIYEVVGL--GGDGRNENSLVRKSGTTFITVPYARMNQEMQRITK 63
Query: 228 QGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVV 287
G K + ED E + T + P T S
Sbjct: 64 LGGKI-------VSIRPAEDAAQIVSEGQSSAQASAQSPMASSTKIVHPKTTDTSVP--- 113
Query: 288 FYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGL 347
+Y + P EL + H+ FDI+ L
Sbjct: 114 -------------------VNIYRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGDL 154
Query: 348 TYETGDHVGVYCEN 361
Y G +G+
Sbjct: 155 RYLEGQSIGIIPPG 168
|
| >3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A* Length = 316 | Back alignment and structure |
|---|
Score = 287 bits (736), Expect = 6e-92
Identities = 54/269 (20%), Positives = 96/269 (35%), Gaps = 37/269 (13%)
Query: 434 QRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT 493
Q + + + + + I + R YSISSS + + + +
Sbjct: 70 QINKDHNIINTTNHTNHNNIALSHIKKQRCARLYSISSSNNMENLSVAIKIHKYEQTENA 129
Query: 494 -GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPAD---AKVPIIMIGPGTGLA 549
+ G CS ++KN + + F LP D I I GTG++
Sbjct: 130 PNITNYGYCSGFIKNLKINDD------IYLTGAHGYFNLPNDAIQKNTNFIFIATGTGIS 183
Query: 550 PFRGFLQERFA------LQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS-QL 602
P+ FL++ FA G +++G N +Y +EL F + + +
Sbjct: 184 PYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNED-SILYLNELEYFQKMYPNNINI 242
Query: 603 IVAFSRE---GPTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIV 658
FS + T YVQ ++ ++ ++ N+ + LY+CG KS+ V L
Sbjct: 243 HYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGK-KSIRYKVMDIL---- 297
Query: 659 QEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
+ D K R +V+
Sbjct: 298 KSHDQFDEKKK----------KRVHVEVY 316
|
| >3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, alternative splicing, calcium, calmodulin-binding, FAD, FMN, heme, iron, metal-binding; HET: FMN; 2.50A {Homo sapiens} Length = 219 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 1e-62
Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 22/223 (9%)
Query: 75 RRSSSSKPKKVEPLKPLVV-----KEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADEA 129
++ PLK LV + + +VTI F T+TG +E A L
Sbjct: 6 HDEKRRPKRREIPLKVLVKAVLFACMLMRKTMASRVRVTILFATETGKSEALAWDLGALF 65
Query: 130 RARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQ 189
++ KVV +D Y L++E ++ +T+G+G+ N + K
Sbjct: 66 SCAFNP---KVVCMDKYR------LSCLEEERLLLVVTSTFGNGDCPGNGEKLKKSLFML 116
Query: 190 KEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDF 249
KE K +Y VFGLG+ Y F A +D+ L++ GA +L P+G GD+ ED F
Sbjct: 117 KE---LNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPMGEGDELSGQEDAF 173
Query: 250 SAWRELVWPEL-DNLLRDDDDPTTVSTPYTAAIS----EYRVV 287
+W + + + YT+ ++ YR+V
Sbjct: 174 RSWAVQTFKAACETFDVRGKQHIQIPKLYTSNVTWDPHHYRLV 216
|
| >1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1 Length = 191 | Back alignment and structure |
|---|
Score = 204 bits (522), Expect = 3e-62
Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 18/190 (9%)
Query: 94 KEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEY 153
K + + + + +G+ GTAEG A+ LAD A ++ +V +D +A
Sbjct: 11 KVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAP--QVATLDSHAGN---- 64
Query: 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEH 213
L +E V A+Y +G P DNA +F W + ++ ++Y VFG G++ +
Sbjct: 65 ---LPREGAVLIVTASY-NGHPPDNAKQFVDWLDQASAD--EVKGVRYSVFGCGDKNWAT 118
Query: 214 -FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL-----RDD 267
+ K+ +DE LA +GA+ + G D E + WRE +W ++ +
Sbjct: 119 TYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSE 178
Query: 268 DDPTTVSTPY 277
D+ +T+S +
Sbjct: 179 DNKSTLSLQF 188
|
| >1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2 Length = 167 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 2e-57
Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 12/176 (6%)
Query: 99 EVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLK 158
+TI +QTG A A+AL D+ A K+V+ DY ++ +
Sbjct: 4 APAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNV--KLVNAGDYKFKQ------IA 55
Query: 159 KENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIA 218
E ++ +T G+GEP + A +K+ +K L+ + VF LG+ YE F +
Sbjct: 56 SEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKA--PKLENTAFAVFSLGDTSYEFFCQSG 113
Query: 219 KVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVS 274
K D LA G +RL+ D + + S WR V L + +V+
Sbjct: 114 KDFDSKLAELGGERLLDRVDADVE--YQAAASEWRARVVDALKSRAPVAAPSQSVA 167
|
| >2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A Length = 147 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 1e-47
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 15/157 (9%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
+T+ G+ G AE A+ LA++ F + E+ L I
Sbjct: 3 DITLISGSTLGGAEYVAEHLAEKLEEAG----FTTETLHGPLLED------LPASGIWLV 52
Query: 166 FLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEIL 225
+T+G G+ DN + FY+ EQK L +++G G+G+R+Y+ F ++ L
Sbjct: 53 ISSTHGAGDIPDNLSPFYEALQEQKP---DLSAVRFGAIGIGSREYDTFCGAIDKLEAEL 109
Query: 226 ANQGAKRLVPVGLGD--DDQCIEDDFSAWRELVWPEL 260
N GAK+ + D ED W L
Sbjct: 110 KNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLL 146
|
| >1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ... Length = 147 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 3e-33
Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K I +G+ TG E A+ +A E + D E + ++V
Sbjct: 2 KALIVYGSTTGNTEYTAETIARELADAGYEV--DSRDAASV-----EAGGLFEGFDLVLL 54
Query: 166 FLATYGDG--EPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDE 223
+T+GD E D+ + E Q K FG G+ +E+F ++E
Sbjct: 55 GCSTWGDDSIELQDDFIPLFDSLEETG-----AQGRKVACFGCGDSSWEYFCGAVDAIEE 109
Query: 224 ILANQGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPEL 260
L N GA+ + D D + DD W V +
Sbjct: 110 KLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI 147
|
| >2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1 Length = 173 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 2e-27
Identities = 40/181 (22%), Positives = 66/181 (36%), Gaps = 36/181 (19%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ IFF T TG A + A+ D +D+DD D + LK +++F
Sbjct: 1 KIGIFFSTSTGNTTEVADFIGKTLGAKADA----PIDVDDVTDPQA-----LKDYDLLFL 51
Query: 166 FLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDE 223
T+ G T+ + + F K ++ L +FGLG+ + ++F + + +
Sbjct: 52 GAPTWNTGADTERSGTSWDEFLYDKLPEVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHD 111
Query: 224 ILANQGAKRLVP-------------------VGLGDDDQCIEDDFS-----AWRELVWPE 259
A QGAK + +GL D + W E V E
Sbjct: 112 CFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGLPLDMVN-DQIPMEKRVAGWVEAVVSE 170
Query: 260 L 260
Sbjct: 171 T 171
|
| >3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A* Length = 148 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-25
Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 15/158 (9%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
KV I FG+ TG E A+ L + A + +++ D E + V F
Sbjct: 3 KVLIVFGSSTGNTESIAQKLEELIAAGGHEV--TLLNAADA-----SAENLADGYDAVLF 55
Query: 166 FLATY--GDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDE 223
+ + D E D+ ++ F L K F G+++YEHF ++E
Sbjct: 56 GCSAWGMEDLEMQDDFLSLFEEFDRIG-----LAGRKVAAFASGDQEYEHFCGAVPAIEE 110
Query: 224 ILANQGAKRLVPVGLGD-DDQCIEDDFSAWRELVWPEL 260
GA + + D + +++ E V +L
Sbjct: 111 RAKELGATIIAEGLKMEGDASNDPEAVASFAEDVLKQL 148
|
| >2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus} Length = 182 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 1e-23
Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 37/187 (19%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ +FFG+ TGT AK + D K ++++ + + +
Sbjct: 3 KIGLFFGSDTGTTRKIAKQIKDMFDDEVMA---KPLNVNRADVAD------FMAYDFLIL 53
Query: 166 FLATYGDGEPTDNAARFYKWFTE---QKEGGEWLQKLKYGVFGLGNRQ--YEHFNKIAKV 220
T GDG+ +A E + + +FGLG++ F
Sbjct: 54 GTPTLGDGQLPGLSANAASESWEEFLPRIADQDFSGKTIALFGLGDQVTYPLEFVNALFF 113
Query: 221 VDEILANQGAKRLVP-------------------VGLGDDDQC----IEDDFSAWRELVW 257
+ E +++GA + +GL D + W L+
Sbjct: 114 LHEFFSDRGANVVGRWPAKGYGFEDSLAVVEGEFLGLALDQDNQAALTPERLKGWLSLIA 173
Query: 258 PELDNLL 264
+ +L
Sbjct: 174 ADFGLVL 180
|
| >1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1 Length = 179 | Back alignment and structure |
|---|
Score = 87.3 bits (216), Expect = 5e-20
Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 39/184 (21%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ +FFG+ TG AK++ D+ + ++++ + E+ + +
Sbjct: 2 KIGLFFGSNTGKTRKVAKSIKKRFD---DETMSDALNVNRVSAED------FAQYQFLIL 52
Query: 166 FLATYGDGEPTDNAARFYKWFTE---QKEGGEWLQKLKYGVFGLGNRQ--YEHFNKIAKV 220
T G+GE ++ E K G +FGLG++ E++
Sbjct: 53 GTPTLGEGELPGLSSDAENESWEEFLPKIEGLDFSGKTVALFGLGDQVGYPENYLDALGE 112
Query: 221 VDEILANQGAKRLVP-------------------VGLGDDDQCIEDDFS-----AWRELV 256
+ ++GAK + VGL D + + AW +
Sbjct: 113 LYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFVGLALDLDN-QSGKTDERVAAWLAQI 171
Query: 257 WPEL 260
PE
Sbjct: 172 APEF 175
|
| >1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A* Length = 175 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 4e-19
Identities = 36/181 (19%), Positives = 62/181 (34%), Gaps = 41/181 (22%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
IFFG+ TG E AK + + V D+ D A +E L+ +I+
Sbjct: 2 ITGIFFGSDTGNTENIAKMIQKQLGK-------DVADVHDIAKSS---KEDLEAYDILLL 51
Query: 166 FLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQ--YEHFNKIAKVVDE 223
+ T+ GE + F+ E +FG G+++ E+F + +
Sbjct: 52 GIPTWYYGEAQCDWDDFFPTLEEID-----FNGKLVALFGCGDQEDYAEYFCDALGTIRD 106
Query: 224 ILANQGAKRLVP--------------------VGLGDDDQC----IEDDFSAWRELVWPE 259
I+ +GA + VGL D+ + W + + E
Sbjct: 107 IIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWVKQISEE 166
Query: 260 L 260
L
Sbjct: 167 L 167
|
| >1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A* Length = 169 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 2e-17
Identities = 26/139 (18%), Positives = 56/139 (40%), Gaps = 16/139 (11%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ +F+GTQTG + A+++ E ++I + DI + + L + +
Sbjct: 2 KIGLFYGTQTGVTQTIAESIQQEFG---GESIVDLNDIANADASD------LNAYDYLII 52
Query: 166 FLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQ--YEHFNKIAKVVDE 223
T+ GE + Y Q K FG G++ ++F +++E
Sbjct: 53 GCPTWNVGELQSDWEGIYDDLDSVN-----FQGKKVAYFGAGDQVGYSDNFQDAMGILEE 107
Query: 224 ILANQGAKRLVPVGLGDDD 242
+++ G++ + + D
Sbjct: 108 KISSLGSQTVGYWPIEGYD 126
|
| >2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A* Length = 164 | Back alignment and structure |
|---|
Score = 75.0 bits (184), Expect = 6e-16
Identities = 32/178 (17%), Positives = 52/178 (29%), Gaps = 40/178 (22%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ IFFGT +G AE A+ ++ +VVD+ + E+ V
Sbjct: 3 KIGIFFGTDSGNAEAIAEKISKAIGN------AEVVDVAKASKEQ------FNSFTKVIL 50
Query: 166 FLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEIL 225
T G G+ + F G+ GLG++ +
Sbjct: 51 VAPTAGAGDLQTDWEDFLGTLEAS-----DFANKTIGLVGLGDQDTYSETFAEGIFHIYE 105
Query: 226 ANQGAKRLVP-------------------VGLGDDDQ----CIEDDFSAWRELVWPEL 260
+ K + VGL D+ ++ S W E V
Sbjct: 106 KAKAGKVVGQTSTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKWVEQVKGSF 163
|
| >1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A* Length = 169 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 6e-16
Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 42/182 (23%)
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVF 164
+K+ +F+GTQTG E A+ + DE + + D+ + L +
Sbjct: 2 KKIGLFYGTQTGKTESVAEIIRDEF----GNDVVTLHDVSQAEVTD------LNDYQYLI 51
Query: 165 FFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVD 222
T GE + Y + FG G++ ++F +++
Sbjct: 52 IGCPTLNIGELQSDWEGLYSELDDVD-----FNGKLVAYFGTGDQIGYADNFQDAIGILE 106
Query: 223 EILANQGAKRLVP-------------------VGLGDDDQCIEDDFS-----AWRELVWP 258
E ++ +G K + VGL D+ + D + +W +
Sbjct: 107 EKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDN-QSDLTDDRIKSWVAQLKS 165
Query: 259 EL 260
E
Sbjct: 166 EF 167
|
| >1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 Length = 396 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 38/199 (19%), Positives = 61/199 (30%), Gaps = 26/199 (13%)
Query: 460 PRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSW 519
P + R YS++ P RI V K R G S W+ N +
Sbjct: 199 PHQEIRQYSLTRKPDGKGYRIAV-------K----REEGGQVSNWLHNHANVGDVVKLV- 246
Query: 520 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRN 579
AP +F + P+ +I G G P L L +AG F N
Sbjct: 247 AP----AGDFFMAVADDTPVTLISAGVGQTPMLAMLD---TLAKAGHT-AQVNWFHAAEN 298
Query: 580 RKMDYIYEDELNNFVQSGALSQLIVAFSR----EGPTKEYVQHKMMEKSSDIWNMLSEGA 635
+ + DE+ QS + + + ++ +M+ S
Sbjct: 299 GD-VHAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTM 357
Query: 636 YLYVCGDAKSMARDVHRTL 654
Y+CG + + L
Sbjct: 358 QFYLCG-PVGFMQFTAKQL 375
|
| >1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A* Length = 403 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 4e-11
Identities = 46/199 (23%), Positives = 75/199 (37%), Gaps = 22/199 (11%)
Query: 460 PRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSW 519
Q R YS+S P RI V ++ G G S + + + + +
Sbjct: 201 GLQQIRQYSLSDMPNGRTYRISV------KREGGGPQPPGYVSNLLHDHVNVGDQVKLA- 253
Query: 520 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRN 579
AP +F + DAK PI++I G GL P L + ALQ ++ + G RN
Sbjct: 254 AP----YGSFHIDVDAKTPIVLISGGVGLTPMVSML--KVALQAPPRQV---VFVHGARN 304
Query: 580 RKMDYIYEDELNNFVQSGALSQLIVAFSREGPT----KEYVQHKMMEKSSDIWNMLSEGA 635
+ D L ++ L V + + P ++Y +++ ++L A
Sbjct: 305 SA-VHAMRDRLREAAKTYENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLPDA 363
Query: 636 YLYVCGDAKSMARDVHRTL 654
Y+CG R H L
Sbjct: 364 DYYICG-PIPFMRMQHDAL 381
|
| >1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 Length = 250 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 8e-11
Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 34/186 (18%)
Query: 463 QPRYYSISSSPRVAPS-RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 521
R YS ++ P + + +G S +++N +
Sbjct: 59 VSRSYSPANLPNPEGRLEFLI-----------RVLPEGRFSDYLRNDA---RVGQ----V 100
Query: 522 IFVR--QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRN 579
+ V+ F L P + GTGLAP +++ +QE A + ++FG
Sbjct: 101 LSVKGPLGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQ---MQEWTAP-NETRIYFGVNT 156
Query: 580 RKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKE----YVQHKMMEKSSDIWNMLSEGA 635
+ Y DEL + +S + E + E D+ + +
Sbjct: 157 EP-ELFYIDELKSLERSMRNLTVKACVWHPSGDWEGEQGSPIDALRE---DLESSDANPD 212
Query: 636 YLYVCG 641
Y+CG
Sbjct: 213 I-YLCG 217
|
| >1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 45/197 (22%), Positives = 70/197 (35%), Gaps = 35/197 (17%)
Query: 463 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 522
+ R YS SS P + V V +G S ++ K+ D +
Sbjct: 154 ETRSYSFSSQPGNRLTGFVVR-----------NVPQGKMSEYLSVQA---KAGD----KM 195
Query: 523 FVR--QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 580
+F L D K P++M+ GTG+APF LQ L++ G+E P L FG
Sbjct: 196 SFTGPFGSFYLR-DVKRPVLMLAGGTGIAPFLSMLQ---VLEQKGSE-HPVRLVFGVTQD 250
Query: 581 KMDYIYEDELNNFVQSGALSQLIVAFSREGPT---KEYVQHKMMEKSSDIWNMLSEGAYL 637
D + ++L+ Q + + K YV + + +
Sbjct: 251 C-DLVALEQLDALQQKLPWFEYRTVVAHAESQHERKGYVTGHIEYDWLNG-----GEVDV 304
Query: 638 YVCGDAKSMARDVHRTL 654
Y+CG M V L
Sbjct: 305 YLCG-PVPMVEAVRSWL 320
|
| >1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Length = 232 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 8e-10
Identities = 33/221 (14%), Positives = 63/221 (28%), Gaps = 44/221 (19%)
Query: 448 KPPLGVFFAA------IVPRLQPRYYSISSSPRVAPSRI--HVTCALVYEKTPTGRVHKG 499
P F A ++ R +S++S+P I H+ G
Sbjct: 23 VPDAAFSFRAGQYLMVVMDERDKRPFSMASTPD-EKGFIELHI-----------GASEIN 70
Query: 500 LCSTWMKNSLPMEKSNDCSWAPIFVR--QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQE 557
L + + + + + I V L D + P+I+I GTG + R L
Sbjct: 71 LYAKAVMDRI---LKDH----QIVVDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLT 123
Query: 558 RFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKE--- 614
+++G R + EL Q++ +
Sbjct: 124 ---ALARNPN-RDITIYWGGREEQ-HLYDLCELEALSLKHPGLQVVPVVEQPEAGWRGRT 178
Query: 615 -YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL 654
V +++ + +Y+ G MA+
Sbjct: 179 GTVLTAVLQDHGTL-----AEHDIYIAG-RFEMAKIARDLF 213
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 2e-08
Identities = 70/481 (14%), Positives = 140/481 (29%), Gaps = 151/481 (31%)
Query: 83 KKVEPLKPLVVKEPEVE----VDDGKQKVTIFFGT-QTGTAEGFAKALADEARARYD--K 135
K V+ + ++ + E++ D F T + E K + + R Y
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 136 AIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGE--PTDNAARFYKWFTEQKEGG 193
+ K + Y E+ + Y D + N +R + + + ++
Sbjct: 96 SPIKTEQRQP-SMMTRMYIEQRDR---------LYNDNQVFAKYNVSRL-QPYLKLRQ-- 142
Query: 194 EWLQKLK-------YGVFGLGNRQYEHFNKIAK--VVDEILANQGAKRLVP-----VGLG 239
L +L+ GV G G K V ++ + + + + L
Sbjct: 143 -ALLELRPAKNVLIDGVLGSG-----------KTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 240 DDDQCIEDDFSAWRELVWPELD-NLLRDDDDPTTVSTPYTAAISEYRVVF----YDNA-- 292
+ + E ++L ++D N D + + + +E R + Y+N
Sbjct: 191 NCN-SPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 293 ---DASVGEKSWGNANGHAVYDAQH------PCRSNVAVRKELHTPSSDRSCTHLEFDIA 343
+ V +A+ C+ L T + + T D
Sbjct: 249 VLLN---------------VQNAKAWNAFNLSCKI-------LLT-TRFKQVT----DFL 281
Query: 344 GTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPP--- 400
T H+ + +++ T +E SLL L +D LP
Sbjct: 282 SAATTT----HISLDHHSMTLTPDEVKSLLLK------YLDCRPQD--------LPREVL 323
Query: 401 -TFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIV 459
T P R ++ A+ + +D A W + + ++ + +
Sbjct: 324 TTNP---RRLSI--IAESI----RDGLATWD-NWKHVNCDKLTTI------IESSLNVLE 367
Query: 460 PR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW--MKNSLPMEKSND 516
P + + +S V P H+ L W + S M N
Sbjct: 368 PAEYRKMFDRLS----VFPPSAHIP-----TIL--------LSLIWFDVIKSDVMVVVNK 410
Query: 517 C 517
Sbjct: 411 L 411
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 3e-04
Identities = 81/562 (14%), Positives = 152/562 (27%), Gaps = 198/562 (35%)
Query: 140 VVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKL 199
V + D D +D + L KE I D + + F W
Sbjct: 30 VDNFDCK-DVQDMPKSILSKEEIDHII------MSK-DAVSGTLRLF--------WTLLS 73
Query: 200 KYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPE 259
K + F V+E+L ++ + +
Sbjct: 74 K------QEEMVQKF------VEEVL--------------------RINYK-F---LM-- 95
Query: 260 LDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSN 319
+ + P+ ++ Y E R ++ + N + V+ + N
Sbjct: 96 -SPIKTEQRQPSMMTRMY----IEQR------------DRLY---NDNQVFA-----KYN 130
Query: 320 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDT 379
V R + + + +AL L L P
Sbjct: 131 V-SRLQPYL------------------------------------KLRQAL--LELRPAK 151
Query: 380 YFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWI----VASQR 435
+ G+ GK+ + AL K D W+ S
Sbjct: 152 NVLIDGVL--GS--GKTWV-----------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 436 SLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPR-VAPSRIHVTCALVYEKTPTG 494
++LE++ + P + ++ R +SI + R + S+ + C LV
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV------- 249
Query: 495 RVHKGL---CSTWMKNSLPMEKSNDCSWAPIFV--RQSN--FKLPADAKVPIIMIGPGTG 547
L + N+ + C I + R L A I +
Sbjct: 250 -----LLNVQNAKAWNAF----NLSC---KILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 548 LAP------FRGFLQERFA-LQEAGAELGPSLL-FFGCRNRKM-------DYIYEDELNN 592
L P +L R L P L R ++ D+L
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 593 FVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDI--------W-NMLSEGAYLYVCGDA 643
++S +L+ L A R K + + + S+ I W +++ + V
Sbjct: 358 IIES-SLNVLEPAEYR----KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 644 -KSMA-RDVHR---TLHTIVQE 660
S+ + ++ +I E
Sbjct: 413 KYSLVEKQPKESTISIPSIYLE 434
|
| >2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis} Length = 290 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 4e-06
Identities = 36/206 (17%), Positives = 74/206 (35%), Gaps = 28/206 (13%)
Query: 463 QPRYYSISSSPRVAPS-RIHVTCALVYEKTPTG----RVHKGLCSTWMKNSLPMEKSNDC 517
R YS+++ P ++V A + G+ S+++ + P +K
Sbjct: 85 TVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDK---- 140
Query: 518 SWAPIFVR--QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFF 575
+ + +F + D ++ IG G G+AP R + F + G ++
Sbjct: 141 ----VMMSGPYGDFHIQ-DTDAEMLYIGGGAGMAPLRAQILHLFRTLKTG---RKVSYWY 192
Query: 576 GCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT------KEYVQHKMMEKSSDIWN 629
G R++ + YE++ + + +A S P ++ + + +
Sbjct: 193 GARSKN-EIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYVGFIHQVIYDNYLKDHD 251
Query: 630 MLSEGAYLYVCGDAKSMARDVHRTLH 655
+ Y Y+CG MA V L
Sbjct: 252 APEDIEY-YMCG-PGPMANAVKGMLE 275
|
| >2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* Length = 257 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 20/131 (15%)
Query: 465 RYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 524
R YSI+S +V G ++ +++ +++ ++ +
Sbjct: 50 RAYSIASPNYEEHLEFFSI-----------KVPDGPLTSRLQH---LKEGDELMVSRKPT 95
Query: 525 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDY 584
K + ++ GTG+APF +Q+ + +L G R +
Sbjct: 96 GTLVHDDLLPGK-HLYLLSTGTGMAPFLSVIQDPETYERY----EKVILVHGVRWVS-EL 149
Query: 585 IYEDELNNFVQ 595
Y D + +
Sbjct: 150 AYADFITKVLP 160
|
| >2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1 Length = 137 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 20/144 (13%)
Query: 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFF 166
V I + + TG E A + +A D++ E+ ++ + ++++
Sbjct: 2 VEIVYWSGTGNTEAMANEIEAAVKA-------AGADVESVRFEDTNVDD-VASKDVILLG 53
Query: 167 LATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILA 226
G E D+ + K L+ K G+FG + +
Sbjct: 54 CPAMGSEELEDSVVEPFFTDLAPK-----LKGKKVGLFGSYGWGSGEWMDA---WKQRTE 105
Query: 227 NQGAKRLVP---VGLGDD-DQCIE 246
+ GA + + D+ +C E
Sbjct: 106 DTGATVIGTAIVNEMPDNAPECKE 129
|
| >2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* Length = 272 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 37/207 (17%), Positives = 66/207 (31%), Gaps = 34/207 (16%)
Query: 461 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 520
+ R YSI+S + +V G ++ +++ ++
Sbjct: 60 KPIMRAYSIASPAWDEELEFYSI-----------KVPDGPLTSRLQH---IKVGEQIILR 105
Query: 521 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 580
P V K + + GTG+APF ++E EA + ++ CR
Sbjct: 106 PKPVGTLVIDALLPGK-RLWFLATGTGIAPFASLMREP----EAYEKFDEVIMMHACRTV 160
Query: 581 KMDYIYEDELNNFVQSGALSQLIVA-------------FSREGPTKEYVQHKMMEKSSDI 627
+ Y +L +Q L +V F G + + + + I
Sbjct: 161 A-ELEYGRQLVEALQEDPLIGELVEGKLKYYPTTTREEFHHMGRITDNLASGKVFEDLGI 219
Query: 628 WNMLSEGAYLYVCGDAKSMARDVHRTL 654
M E VCG + DV + L
Sbjct: 220 APMNPETDRAMVCGSL-AFNVDVMKVL 245
|
| >4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A* Length = 271 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 31/203 (15%), Positives = 63/203 (31%), Gaps = 34/203 (16%)
Query: 465 RYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 524
R YSI S +V G ++ +++ ++ +
Sbjct: 66 RAYSIVSPNYEEHLEFFSI-----------KVQNGPLTSRLQH---LKVGDPVLIGKKPT 111
Query: 525 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDY 584
K + M+ GTGLAPF +++ + +L CR + +
Sbjct: 112 GTLVADNLLPGK-TLWMLSTGTGLAPFMSIIRD----PDIYERFDKVVLTHTCRLKG-EL 165
Query: 585 IYEDELNNFVQSGALSQLIVAF--------SRE-----GPTKEYVQHKMMEKSSDIWNML 631
Y D + + + ++ +RE G + + + D+
Sbjct: 166 AYMDYIKHDLPGHEYLGDVIREKLVYYPTVTREEFENEGRITDLIASGKLFTDLDMPPFS 225
Query: 632 SEGAYLYVCGDAKSMARDVHRTL 654
E + +CG +M +D L
Sbjct: 226 PEQDRVMLCGST-AMLKDTTELL 247
|
| >2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* Length = 270 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 7e-04
Identities = 37/219 (16%), Positives = 68/219 (31%), Gaps = 28/219 (12%)
Query: 443 EFPSAKPPLGV-------FFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGR 495
PS LG+ A I +L R Y+ +S + VY K +
Sbjct: 33 SLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVD-EIGHFDLLVK-VYFKNEHPK 90
Query: 496 VHKGLCSTWMKNSLP---MEKSNDCSWAPIFVRQSNFKLPADAKVP--IIMIGPGTGLAP 550
G T +SLP + + +F + + + MI G+G+ P
Sbjct: 91 FPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITP 150
Query: 551 FRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ--SGALSQLIVAFSR 608
+ + L++ + L + R D + DEL+ + L V
Sbjct: 151 MYQII--QAVLRDQPEDHTEMHLVYANRTED-DILLRDELDRWAAEYPDRLKVWYVIDQV 207
Query: 609 EGPTKE------YVQHKMMEKSSDIWNMLSEGAYLYVCG 641
+ P + +V ++ + + CG
Sbjct: 208 KRPEEGWKYSVGFVTEAVLRE---HVPEGGDDTLALACG 243
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 687 | |||
| 3qe2_A | 618 | CPR, P450R, NADPH--cytochrome P450 reductase; cypo | 100.0 | |
| 2bpo_A | 682 | CPR, P450R, NADPH-cytochrom P450 reductase; NADPH- | 100.0 | |
| 1tll_A | 688 | Nitric-oxide synthase, brain; reductase module, FM | 100.0 | |
| 3qfs_A | 458 | CPR, P450R, NADPH--cytochrome P450 reductase; flav | 100.0 | |
| 2qtl_A | 539 | MSR;, methionine synthase reductase; alpha-beta-al | 100.0 | |
| 4dql_A | 393 | Bifunctional P-450/NADPH-P450 reductase; rossmann | 100.0 | |
| 1ddg_A | 374 | Sulfite reductase (NADPH) flavoprotein alpha- comp | 100.0 | |
| 1f20_A | 435 | Nitric-oxide synthase; nitric-xoide synthase, redu | 100.0 | |
| 1fnb_A | 314 | Ferredoxin-NADP+ reductase; oxidoreductase (NADP+( | 100.0 | |
| 2bmw_A | 304 | Ferredoxin--NADP reductase; oxidoreductase, flavop | 100.0 | |
| 3vo2_A | 310 | Putative uncharacterized protein; rossmann fold, o | 100.0 | |
| 2b5o_A | 402 | FNR, ferredoxin--NADP reductase; complex with FAD, | 100.0 | |
| 2rc5_A | 314 | Ferredoxin-NADP reductase; FAD, oxidoreductase; HE | 100.0 | |
| 3lo8_A | 311 | Ferredoxin--NADP reductase; electron transport, ox | 100.0 | |
| 3hr4_A | 219 | Nitric oxide synthase, inducible; inducible nitric | 100.0 | |
| 3jqq_A | 316 | Ferredoxin NADP reductase; FAD, oxidoreductase; HE | 100.0 | |
| 1bvy_F | 191 | Protein (cytochrome P450 BM-3); fatty acid monooxy | 99.95 | |
| 1ykg_A | 167 | SIR-FP, sulfite reductase [NADPH] flavoprotein alp | 99.93 | |
| 2hna_A | 147 | Protein MIOC, flavodoxin; alpha-beta sandwich, fla | 99.92 | |
| 1tvc_A | 250 | Methane monooxygenase component C, methane monooxy | 99.91 | |
| 1umk_A | 275 | B5R, NADH-cytochrome B5 reductase; flavoprotein, b | 99.9 | |
| 2r6h_A | 290 | NADH:ubiquinone oxidoreductase, Na translocating, | 99.9 | |
| 1qfj_A | 232 | Protein (flavin reductase); riboflavin, ferredoxin | 99.9 | |
| 3f6r_A | 148 | Flavodoxin; FMN binding, oxidized, electron transp | 99.89 | |
| 2eix_A | 243 | NADH-cytochrome B5 reductase; flavoprotein, FAD-bi | 99.89 | |
| 1fdr_A | 248 | Flavodoxin reductase; ferredoxin reductase, flavin | 99.89 | |
| 4eh1_A | 243 | Flavohemoprotein; structural genomics, niaid, nati | 99.89 | |
| 1krh_A | 338 | Benzoate 1,2-dioxygenase reductase; alpha-beta, FA | 99.89 | |
| 1gvh_A | 396 | Flavohemoprotein; oxidoreductase, NADP, heme, flav | 99.88 | |
| 4fk8_A | 271 | Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st | 99.87 | |
| 2bgi_A | 272 | Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi | 99.87 | |
| 4g1v_A | 399 | Flavohemoglobin; three domains: globin fold, antip | 99.87 | |
| 1cqx_A | 403 | Flavohemoprotein; globin fold, six-stranded antipa | 99.87 | |
| 2cnd_A | 270 | NADH-dependent nitrate reductase; nitrate assimila | 99.87 | |
| 2qdx_A | 257 | Ferredoxin reductase; oxidoreductase; HET: FAD; 1. | 99.87 | |
| 1ep3_B | 262 | Dihydroorotate dehydrogenase B (PYRK subunit); het | 99.87 | |
| 1f4p_A | 147 | Flavodoxin; electron transport, flavoprotein, FMN, | 99.85 | |
| 2wc1_A | 182 | Flavodoxin; electron transport, flavoprotein; HET: | 99.84 | |
| 1yob_A | 179 | Flavodoxin 2, flavodoxin II; alpha-beta fold, non- | 99.84 | |
| 2fcr_A | 173 | Flavodoxin; electron transport; HET: FMN; 1.80A {C | 99.83 | |
| 2pia_A | 321 | Phthalate dioxygenase reductase; HET: FMN; 2.00A { | 99.83 | |
| 1ag9_A | 175 | Flavodoxin; electron transport, reductive activati | 99.83 | |
| 2bmv_A | 164 | Flavodoxin; electron transport, flavoprotein, FMN, | 99.82 | |
| 1obo_A | 169 | Flavodoxin; electron transfer, flavoprotein, elect | 99.81 | |
| 1czn_A | 169 | Flavodoxin; FMN binding, redox potential, electron | 99.8 | |
| 5nul_A | 138 | Flavodoxin; electron transport, flavoprotein, FMN; | 99.73 | |
| 2xod_A | 119 | NRDI protein, NRDI; flavoprotein, redox protein, r | 99.67 | |
| 3hly_A | 161 | Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein | 99.65 | |
| 3fni_A | 159 | Putative diflavin flavoprotein A 3; alpha-beta pro | 99.63 | |
| 2gpj_A | 252 | Siderophore-interacting protein; structural genomi | 99.62 | |
| 1rlj_A | 139 | NRDI protein; flavoprotein, FMN, thioredoxin, alph | 99.61 | |
| 2fz5_A | 137 | Flavodoxin; alpha/beta doubly-wound topology, non- | 99.61 | |
| 3a1f_A | 186 | Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi | 99.59 | |
| 3lrx_A | 158 | Putative hydrogenase; alpha-beta protein, structur | 99.53 | |
| 3lyu_A | 142 | Putative hydrogenase; the C-terminal has AN alpha- | 99.53 | |
| 3n3a_C | 153 | Protein NRDI; ribonucleotide reductase, four-helix | 99.38 | |
| 1e5d_A | 402 | Rubredoxin\:oxygen oxidoreductase; oxygenreductase | 99.31 | |
| 2ark_A | 188 | Flavodoxin; FMN, structural genomics, PSI, structu | 99.31 | |
| 2a5l_A | 200 | Trp repressor binding protein WRBA; APC5760, PA094 | 99.31 | |
| 1ycg_A | 398 | Nitric oxide reductase; DIIRON site, oxidoreductas | 99.3 | |
| 4dik_A | 410 | Flavoprotein; TM0755, electron transport, DI-iron | 99.29 | |
| 2q9u_A | 414 | A-type flavoprotein; flavodoxin like, beta lactama | 99.23 | |
| 3b6i_A | 198 | Flavoprotein WRBA; flavoproteins, NADH:quinone oxi | 99.19 | |
| 3klb_A | 162 | Putative flavoprotein; structural genomi center fo | 99.19 | |
| 2ohh_A | 404 | Type A flavoprotein FPRA; beta-lactamase like doma | 99.19 | |
| 4ici_A | 171 | Putative flavoprotein; PF12682 family protein, fla | 99.15 | |
| 2zki_A | 199 | 199AA long hypothetical Trp repressor binding prot | 99.15 | |
| 3d7n_A | 193 | Flavodoxin, WRBA-like protein; structural genomics | 99.15 | |
| 1ydg_A | 211 | Trp repressor binding protein WRBA; tetramer, stru | 99.12 | |
| 2vzf_A | 197 | NADH-dependent FMN reductase; oxidoreductase; 2.50 | 99.03 | |
| 1t5b_A | 201 | Acyl carrier protein phosphodiesterase; structural | 98.97 | |
| 3edo_A | 151 | Flavoprotein, putative Trp repressor binding prote | 98.95 | |
| 1sqs_A | 242 | Conserved hypothetical protein; structural genomic | 98.74 | |
| 1rtt_A | 193 | Conserved hypothetical protein; protein structure | 98.73 | |
| 1t0i_A | 191 | YLR011WP; FMN binding protein, flavodoxin, azoredu | 98.71 | |
| 3gfs_A | 174 | FMN-dependent NADPH-azoreductase; flavoproteins, q | 98.68 | |
| 2hpv_A | 208 | FMN-dependent NADH-azoreductase; structural genomi | 98.58 | |
| 2q62_A | 247 | ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobi | 98.49 | |
| 1rli_A | 184 | Trp repressor binding protein; structural genomics | 98.46 | |
| 2fzv_A | 279 | Putative arsenical resistance protein; flavin bind | 98.35 | |
| 3fvw_A | 192 | Putative NAD(P)H-dependent FMN reductase; Q8DWD8_s | 98.35 | |
| 3rpe_A | 218 | MDAB, modulator of drug activity B; structural gen | 98.32 | |
| 3r6w_A | 212 | FMN-dependent NADH-azoreductase 1; nitrofurazone, | 98.31 | |
| 3k1y_A | 191 | Oxidoreductase; structural genomics, PSI-2, protei | 98.26 | |
| 4hs4_A | 199 | Chromate reductase; triple-layered, A/B/A structur | 98.17 | |
| 3lcm_A | 196 | SMU.1420, putative oxidoreductase; NADPH:quinone o | 98.15 | |
| 3f2v_A | 192 | General stress protein 14; alpha-beta protein., st | 98.1 | |
| 1d4a_A | 273 | DT-diaphorase, quinone reductase; flavoprotein, ro | 98.09 | |
| 2amj_A | 204 | Modulator of drug activity B; oxidoreductase, mena | 98.07 | |
| 3p0r_A | 211 | Azoreductase; structural genomics, center for stru | 98.06 | |
| 3s2y_A | 199 | Chromate reductase; uranium reductase, oxidoreduct | 97.31 | |
| 3tem_A | 228 | Ribosyldihydronicotinamide dehydrogenase [quinone; | 97.96 | |
| 3u7i_A | 223 | FMN-dependent NADH-azoreductase 1; structural geno | 97.83 | |
| 3u7r_A | 190 | NADPH-dependent FMN reductase; alpha/beta twisted | 97.78 | |
| 3svl_A | 193 | Protein YIEF; E. coli CHRR enzyme, chromate biorem | 97.76 | |
| 3ha2_A | 177 | NADPH-quinone reductase; structural genomics, PSI- | 97.75 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.39 | |
| 4gi5_A | 280 | Quinone reductase; protein structure initiative, F | 97.11 |
| >3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-108 Score=946.08 Aligned_cols=564 Identities=41% Similarity=0.753 Sum_probs=487.0
Q ss_pred ccCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhcc--CCCeEEEEeeCCCCCCCCch
Q 005624 101 DDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLK--KENIVFFFLATYGDGEPTDN 178 (687)
Q Consensus 101 ~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~--~~~~vi~~~sTyG~G~~pdn 178 (687)
....++|+|+|||||||||++|++|++++.+.| ..++++|+++++.++. ..+. +++++||++||||+|++|+|
T Consensus 15 ~~~~~~i~I~YgS~tGnte~~A~~la~~l~~~g--~~~~v~~~~~~~~~~l---~~~~~~~~~~vi~~~sT~G~G~~pd~ 89 (618)
T 3qe2_A 15 KKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYG--MRGMSADPEEYDLADL---SSLPEIDNALVVFCMATYGEGDPTDN 89 (618)
T ss_dssp HHHTCSEEEEEECSSSHHHHHHHHHHHHGGGGT--CCEEEECGGGSCGGGG---GGGGGSTTCEEEEEEECBGGGBCCGG
T ss_pred HhcCCeEEEEEECChhHHHHHHHHHHHHHHhCC--CceEEechHHcCHHHh---hhcccccCcEEEEEcCccCCCCCCHH
Confidence 334577999999999999999999999998776 4578899999986541 2222 47899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHH
Q 005624 179 AARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 258 (687)
Q Consensus 179 a~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~ 258 (687)
|+.|++||.+.. ..|++++||||||||++|++||.++|.++++|+++||++++|+|+||++.+++++|+.|++.+|+
T Consensus 90 ~~~F~~~L~~~~---~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~~g~~D~~~~~~~~~~~W~~~l~~ 166 (618)
T 3qe2_A 90 AQDFYDWLQETD---VDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWL 166 (618)
T ss_dssp GHHHHHHHHHCC---CCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc---ccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeecccccccCCCcHHHHHHHHHHHHH
Confidence 999999998632 46999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHhhhCCCCCCCCCCCCccccccceEEEEecCCCc---ccCc--cccCCCCCCccccCCCCeeEEEeeeecccCCCCCC
Q 005624 259 ELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADA---SVGE--KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDR 333 (687)
Q Consensus 259 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r 333 (687)
+|.+.+..+... .....+.|++........ ...+ ......+...+|+.++|+.|+|+.|++|+. +++|
T Consensus 167 ~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~n~~Lt~-~~~~ 239 (618)
T 3qe2_A 167 AVCEHFGVEATG------EESSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTER 239 (618)
T ss_dssp HHHHHHTCCCC---------CCCCSEEEEECTTCCGGGSBCSCCSSTTTTTSCCSCCSSSSCEEEEEEEEEECSC-CSSS
T ss_pred HHHHHhCCCccc------ccccccceeEEecccccccccccccccccccccccCCCcccCCcEEEEEEeEEEcCC-CCCC
Confidence 999987533211 011235667665422111 0000 001112234567888999999999999995 5789
Q ss_pred ceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCCCCCCC-cCcHHHHHH
Q 005624 334 SCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALT 412 (687)
Q Consensus 334 ~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~~~~~p-p~tl~~~l~ 412 (687)
+|+|||||+++++++|+|||||+|||.|+++.|+++|++||+++|+.+.++..+.. ...+.||| |||++++|+
T Consensus 240 ~~~hie~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~------~~~~~~~p~~~tl~~~l~ 313 (618)
T 3qe2_A 240 HLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEE------SNKKHPFPCPTSYRTALT 313 (618)
T ss_dssp CEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEEEESCTT------CSCCSSSSSSEEHHHHHH
T ss_pred cEEEEEEEcCCCCcccccCCEEEEEcCCCHHHHHHHHHHhCcCCCceEEEecCCcc------ccCCCCCCCceEHHHhhh
Confidence 99999999999999999999999999999999999999999999999999865432 12356888 999999999
Q ss_pred HhhhhcCCCCh------------------------------hHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCC
Q 005624 413 KYADLLSSPKK------------------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRL 462 (687)
Q Consensus 413 ~y~Dl~~~p~k------------------------------~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l 462 (687)
+|+||+++|+| ++|.+|+...+++++|||.+||++++|+++|++. +|++
T Consensus 314 ~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~i~dvL~~fps~~~p~~~l~~~-lp~l 392 (618)
T 3qe2_A 314 YYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCEL-LPRL 392 (618)
T ss_dssp HTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHHTTCSSSHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHH-SCBC
T ss_pred hEeecCCCCcHHHHHHHHHHcCCHHHHHHHHHhhccChhhHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHHh-cccc
Confidence 99999999986 3588899999999999999999999999999975 5999
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCC-CCCCCCCceeeEEEeeCCcccCCCCCCCeEE
Q 005624 463 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP-MEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 541 (687)
Q Consensus 463 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~-~~~~~~~~~~~v~v~~~~F~lp~~~~~PiIm 541 (687)
+||+|||||+|..++++++|+|+++.++++.++.+.|+||+||+++.+ |+. .....++|+++.|+|++|.++.+|+||
T Consensus 393 ~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~-~~~~~v~v~~p~g~F~lp~~~~~piim 471 (618)
T 3qe2_A 393 QARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGEN-GGRALVPMFVRKSQFRLPFKATTPVIM 471 (618)
T ss_dssp CCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC------CCEEEEEEECCSCCCCSSTTSCEEE
T ss_pred ccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCC-CcceEEEEEEecCcccCCCCCCCCeEE
Confidence 999999999998878999999999999998999999999999999988 441 111268899999999999888999999
Q ss_pred EecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhh
Q 005624 542 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMM 621 (687)
Q Consensus 542 Ia~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~ 621 (687)
||+||||||||+|+|+|......+...++++||||||+++.|++|++||+++.+.|.+++++++|||++..|+||||+|.
T Consensus 472 Ig~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g~l~~l~~a~Srd~~~k~yVqd~l~ 551 (618)
T 3qe2_A 472 VGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLK 551 (618)
T ss_dssp ECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHH
T ss_pred EcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcCCCcEEEEEEcCCCCCCCcHHHHHH
Confidence 99999999999999999876555444589999999999966999999999999999988999999999888999999999
Q ss_pred cchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 622 EKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 622 e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
++.+.+++++.++++||||||+++|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 552 ~~~~~l~~~l~~~a~vYvCGp~~~M~~~V~~~L~~i~~~~g~~~~~~a~~~~~~l~~~~RY~~Dv~ 617 (618)
T 3qe2_A 552 QDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 617 (618)
T ss_dssp HTHHHHHHHHHHTCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HhHHHHHHHHhCCcEEEEECCchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEeec
Confidence 999999998888999999999669999999999999999999999999999999999999999999
|
| >2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-103 Score=916.53 Aligned_cols=561 Identities=34% Similarity=0.613 Sum_probs=479.2
Q ss_pred ccccCCceEEEEEecCcchHHHHHHHHHHHHH-hhcCCCeeEEecCCCCCCcchhHHHhccCC-CeEEEEeeCCCCCCCC
Q 005624 99 EVDDGKQKVTIFFGTQTGTAEGFAKALADEAR-ARYDKAIFKVVDIDDYADEEDEYEEKLKKE-NIVFFFLATYGDGEPT 176 (687)
Q Consensus 99 ~~~~~~~~v~I~YgSqtGtae~~A~~la~~l~-~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~-~~vi~~~sTyG~G~~p 176 (687)
.....+++++|+|||||||||++|++|++++. +.+ ..+.++++++++.+ ++..+ +.+||++||||+|++|
T Consensus 44 ~~~~~~~ki~IlY~S~tGnte~~A~~ia~~l~~~~g--~~v~v~~l~~~~~~------~l~~~~~~vi~~~sT~G~G~~p 115 (682)
T 2bpo_A 44 VVTENNKNYLVLYASQTGTAEGFAKAFSKELVAKFN--LNVMCADVENYDFE------SLNDVPVIVSIFISTYGEGDFP 115 (682)
T ss_dssp HHHHTTCSEEEEEECSSSHHHHHHHHHHHHHHHHHC--CCEEEEETTSSCGG------GGGGCCSEEEEEEECBTTTBCC
T ss_pred HHhcCCCeEEEEEECCchHHHHHHHHHHHHhHHhcC--CceEEeehHHCCHH------HHhhcCCeEEEEeCccCCCCCC
Confidence 34456789999999999999999999999998 655 45789999999863 46678 9999999999999999
Q ss_pred chHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCC-CcHHhHHHHHHH
Q 005624 177 DNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ-CIEDDFSAWREL 255 (687)
Q Consensus 177 dna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~-~~e~~f~~W~~~ 255 (687)
+|+..|++||.... ...|++++||||||||++|++||.+++.++++|+++||+++.+++++|++. +.+++|++|.++
T Consensus 116 ~~~~~F~~~l~~~~--~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~~~D~~~~~~~~~~~~W~~~ 193 (682)
T 2bpo_A 116 DGAVNFEDFICNAE--AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLGEADDGAGTTDEDYMAWKDS 193 (682)
T ss_dssp SSCHHHHHHHHTCC--TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEETTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--chhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeECcEEEecCCcccHHHHHHHHHH
Confidence 99999999998642 235999999999999999999999999999999999999999999999874 789999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCCccccccceEEEEecC--CCcccCccc---cCC--------CCCCccccCCCCeeEEEee
Q 005624 256 VWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDN--ADASVGEKS---WGN--------ANGHAVYDAQHPCRSNVAV 322 (687)
Q Consensus 256 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~--------~~~~~~~~~~~p~~a~v~~ 322 (687)
||++|.+.+..+... . ...|.+++...+. ......+.. ... .+....|+.++|+.|+|+.
T Consensus 194 l~~~l~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~ 266 (682)
T 2bpo_A 194 ILEVLKDELHLDEQE----A---KFTSQFQYTVLNEITDSMSLGEPSAHYLPSHQLNRNADGIQLGPFDLSQPYIAPIVK 266 (682)
T ss_dssp HHHHHHHHTTCCCCC----C---CCCCSBCCEECSSCCTTSCSSCSSGGGSTTSCCCCCTTCCBCSCCBTTBCCCEEEEE
T ss_pred HHHHHHhhcCCcccc----c---ccCCcceeEecccCCccccccCccccccccccccccccccccCcccCCCceEEEEEE
Confidence 999999887532211 0 1123444433221 000000000 000 1123467888999999999
Q ss_pred eecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCCCCCC
Q 005624 323 RKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTF 402 (687)
Q Consensus 323 ~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~~~~~ 402 (687)
+++|+. +++|+|+|||||+++++++|+|||||+|||.|+++.|+++|++||+++|+.|+++..+. ..+.||
T Consensus 267 ~~~L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~d~~v~~~~~~~--------~~~~p~ 337 (682)
T 2bpo_A 267 SRELFS-SNDRNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLKPLDP--------TVKVPF 337 (682)
T ss_dssp EEECCC-CSSCCEEEEEEECTTBTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEECCBSST--------TCCCSS
T ss_pred EEEccC-CCCCCEEEEEEEcCCCCceecCCCEEEEEcCCCHHHHHHHHHHhhccCCcEEEEecCCc--------ccCCCC
Confidence 999998 78999999999999999999999999999999999999999999999999999875432 235689
Q ss_pred C-cCcHHHHHHHhhhhcCCCCh--------------------------hHHHHHHHhcCCCHHHHHHhCC----CCCCCh
Q 005624 403 P-PCSLRTALTKYADLLSSPKK--------------------------DEYAQWIVASQRSLLEVMSEFP----SAKPPL 451 (687)
Q Consensus 403 p-p~tl~~~l~~y~Dl~~~p~k--------------------------~~y~~~i~~~~~~l~dvl~~fp----s~~~p~ 451 (687)
| |||++++|++|+||+++|+| ++|.+|+...++|++|+|.+|| ++++|+
T Consensus 338 p~~~tl~~~l~~~ldi~~~p~~~~l~~la~~a~~~~~k~~L~~l~~~~~~~~~~~~~~~~~i~dvL~~fp~~~~s~~~p~ 417 (682)
T 2bpo_A 338 PTPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLSKDKDQFAVEITSKYFNIADALKYLSDGAKWDTVPM 417 (682)
T ss_dssp CSSEEHHHHHHHTBCCSSCCCHHHHHHHSTTCSSHHHHHHHHHHTTCHHHHHHHTGGGTCCHHHHHHHHHTTCCCTTSCH
T ss_pred CCCccHHHHHHHhhhccCCCCHHHHHHHHHHCCCHHHHHHHHHhccCHHHHHHHHhcCCCCHHHHHHhccCcccccCCCH
Confidence 9 99999999999999999987 4789999999999999999999 889999
Q ss_pred HHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCC---CccccCccchhhcccCCC------------CCCC-
Q 005624 452 GVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT---GRVHKGLCSTWMKNSLPM------------EKSN- 515 (687)
Q Consensus 452 ~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~---g~~~~G~~S~~L~~~~~~------------~~~~- 515 (687)
+++++. +|+++||+|||||+|..++++++|+|+++.+.++. ++.+.|+||+||.++.++ +...
T Consensus 418 ~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~G~~v~i 496 (682)
T 2bpo_A 418 QFLVES-VPQMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDL 496 (682)
T ss_dssp HHHHHH-SCBCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCCCCCCCS
T ss_pred HHHHHh-CcccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhcccccccccccccccccceee
Confidence 998864 69999999999999987789999999988887775 678899999999987662 1111
Q ss_pred -------CCceeeEEEeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhh------cCCCCCcEEEEEeeccCCc
Q 005624 516 -------DCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE------AGAELGPSLLFFGCRNRKM 582 (687)
Q Consensus 516 -------~~~~~~v~v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~------~~~~~~~~~LffG~R~~~~ 582 (687)
.+..++++++.++|+||.++.+|+||||+||||||||+|+|++...+. .+...++++||||||++ .
T Consensus 497 ~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG~R~~-~ 575 (682)
T 2bpo_A 497 NGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNT-D 575 (682)
T ss_dssp SCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEEESSS-S
T ss_pred ccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEecCCh-h
Confidence 013788999999999998888999999999999999999999987654 33345899999999999 5
Q ss_pred ccccHHHHHHHH-HcCCCcEEEEEEec-CCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHH
Q 005624 583 DYIYEDELNNFV-QSGALSQLIVAFSR-EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQE 660 (687)
Q Consensus 583 D~ly~del~~~~-~~g~~~~l~~afSr-~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~ 660 (687)
|++|++||++++ +.|.++++++|||| ++..|+||||+|.++.+.+|+++.++++||||||+++|+++|+++|.+|+++
T Consensus 576 D~ly~dEl~~~~~~~g~~~~l~~afSr~d~~~k~yVqd~l~e~~~~l~~~l~~~~~vYvCGpa~~M~~~V~~~L~~i~~~ 655 (682)
T 2bpo_A 576 DFLYQDEWPEYAKKLDGSFEMVVAHSRLPNTKKVYVQDKLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVSTALVGILSR 655 (682)
T ss_dssp SCTTTTTHHHHHHHHGGGEEEEEEESCCTTSCCCCHHHHHHHTHHHHHHHHTTTCEEEEEECSTTHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhcCCceEEEEEECCCCCCCCcchHHHHHhhHHHHHHHHhCCcEEEEeCCchHhHHHHHHHHHHHHHH
Confidence 999999999995 55778899999999 5667999999999999999999888999999999789999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 661 QGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 661 ~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
+++++.++|++|+++|+++|||++|||
T Consensus 656 ~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 682 (682)
T 2bpo_A 656 GKSITTDEATELIKMLKTSGRYQEDVW 682 (682)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred hCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 999999999999999999999999999
|
| >1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-98 Score=875.15 Aligned_cols=562 Identities=31% Similarity=0.593 Sum_probs=469.0
Q ss_pred ccCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHH
Q 005624 101 DDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA 180 (687)
Q Consensus 101 ~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~ 180 (687)
...+++++|+|||||||||.+|++|++.+. .+ ..+++++|++|+.+ +|..++++||++||||+|+||+|++
T Consensus 8 ~~~~~k~~IlY~S~TG~te~~A~~l~~~l~-~~--~~~~v~~m~~~d~~------~l~~~~~vl~vtsT~G~Gdpp~n~~ 78 (688)
T 1tll_A 8 MAKRVKATILYATETGKSQAYAKTLCEIFK-HA--FDAKAMSMEEYDIV------HLEHEALVLVVTSTFGNGDPPENGE 78 (688)
T ss_dssp -CCSCEEEEEEECSSSHHHHHHHHHHHHHT-TT--SEEEEEETTTSCTT------SGGGCSEEEEEECCBTTTBCCGGGH
T ss_pred hcCCCeEEEEEECCchHHHHHHHHHHHHHh-cC--CCcEEeecccCChh------HhccCceEEEEEcccCCCcCCHHHH
Confidence 345678999999999999999999999985 33 56789999999864 4678899999999999999999999
Q ss_pred HHHHHHHhhcC----------------------------C-----------CCCcCCceEEEEeccCCchHHHHHHHHHH
Q 005624 181 RFYKWFTEQKE----------------------------G-----------GEWLQKLKYGVFGLGNRQYEHFNKIAKVV 221 (687)
Q Consensus 181 ~F~~~L~~~~~----------------------------~-----------~~~l~~~~~aVFGlGds~Y~~f~~~ak~l 221 (687)
.|++||.+... + ...|+|++||||||||++|+|||.+++.+
T Consensus 79 ~F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~~aVfGlGds~Y~~F~~~~k~l 158 (688)
T 1tll_A 79 KFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAV 158 (688)
T ss_dssp HHHHHHHHHTC-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTSSSTTHHHHHH
T ss_pred HHHHHHHhccCCccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEeeccCchHHHHHHHHHH
Confidence 99999987520 0 23589999999999999999999999999
Q ss_pred HHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhhhCCCCCCCC-C--C---CCc-cccccceEEEEecCCCc
Q 005624 222 DEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTT-V--S---TPY-TAAISEYRVVFYDNADA 294 (687)
Q Consensus 222 d~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~~~~~~~~-~--~---~~~-~~~~~~~~~~~~~~~~~ 294 (687)
|++|+++||++++++++||+..+.+++|+.|.+.+|++|++.+........ . . .+. ....+.+++........
T Consensus 159 d~~L~~lGa~rl~~~~~~D~~~g~e~~f~~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (688)
T 1tll_A 159 DTLLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDDVNIEKPNNSLISNDRSWKRNKFRLTYVAEAPD 238 (688)
T ss_dssp HHHHHHTTCEESSCCEEEETTTTHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-------CCSSSCCTTTEEEEECSCCCC
T ss_pred HHHHHHcCCceeecceeeccCCCcHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcceEEeccccccc
Confidence 999999999999999999998788999999999999999987642211100 0 0 000 01123455544221100
Q ss_pred ccCccccCCCCCCccccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCC-CCccCCCCeEEEeccCCHHHHHHHHHHh
Q 005624 295 SVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCENLSETVEEALSLL 373 (687)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~-~~~Y~~GD~l~V~p~N~~~~V~~~l~~l 373 (687)
. ......++.++|+.++|+.|++|++++++|+|+|||||++++ +++|+|||||+|||.|+++.|+++|++|
T Consensus 239 ~--------~~~~~~~~~~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l 310 (688)
T 1tll_A 239 L--------TQGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERL 310 (688)
T ss_dssp H--------HHHHHHHTTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTC
T ss_pred c--------cccccccccCCceEEEEEeeeecCCCCCCceEEEEEEecCCCCCCccCCCCEEEEecCCCHHHHHHHHHHh
Confidence 0 000112456789999999999999999999999999999875 7999999999999999999999999999
Q ss_pred CC--CCCceEEEeeCCCCCCcCC---CCCCCCCCCcCcHHHHHHHhhhhcCCCCh-------------------------
Q 005624 374 GL--SPDTYFSLHTDKEDGTPLG---KSTLPPTFPPCSLRTALTKYADLLSSPKK------------------------- 423 (687)
Q Consensus 374 ~l--~~d~~~~i~~~~~~~~~l~---~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k------------------------- 423 (687)
|+ ++|+.+.|+..++...+.. ....+.+|||||++++|++|+||+++|+|
T Consensus 311 ~~~~~~d~~v~~~~~~~~~~p~~~~~~~~~~~~~p~~tl~~~l~~~lDi~~~p~~~~l~~la~~a~~~~ek~~L~~l~~~ 390 (688)
T 1tll_A 311 EDAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKG 390 (688)
T ss_dssp SSCCCSCSCEEEEEEEECCCSSSCCEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTTC
T ss_pred CCCCCCCeEEEEeccccccCCCcccccccccCCCCCccHHHHHHhheeCCCCCCHHHHHHHHHHcCCHHHHHHHHHHhcC
Confidence 86 6789998875322111110 01224577899999999999999999986
Q ss_pred -hHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCC--CccccCc
Q 005624 424 -DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGL 500 (687)
Q Consensus 424 -~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~--g~~~~G~ 500 (687)
++|.+|+...+++++|+|.+||++++|+++++.. +|+++||+|||||+|..+++.++++|+++.+.++. |+.+.|+
T Consensus 391 ~~~~~~~~~~~~~~i~evl~~fps~~~p~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~~G~ 469 (688)
T 1tll_A 391 LQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQ-LSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGV 469 (688)
T ss_dssp SHHHHHHHHHHCCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEEECH
T ss_pred HHHHHHHHhhcCCCHHHHHHhCCCcCCCHHHHHHh-CcccceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcCCCc
Confidence 4688999999999999999999999999988865 69999999999999987678999999988776654 4678899
Q ss_pred cchhhcccCCCCCCCCCceeeEEEe-eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhh-cCCCCCcEEEEEeec
Q 005624 501 CSTWMKNSLPMEKSNDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGCR 578 (687)
Q Consensus 501 ~S~~L~~~~~~~~~~~~~~~~v~v~-~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~-~~~~~~~~~LffG~R 578 (687)
||+||+++.+|+ .++|+++ .+.|++|.++.+|+||||+|||||||++|++++..... .+...++++||||||
T Consensus 470 ~S~~L~~l~~Gd------~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R 543 (688)
T 1tll_A 470 CSSWLNRIQADD------VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCR 543 (688)
T ss_dssp HHHHHTTCCTTS------EEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEES
T ss_pred hhHHHHhCCCCC------EEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEEec
Confidence 999999887765 5788886 45899998888999999999999999999999987532 122347999999999
Q ss_pred cCCcccccHHHHHHHHHcCCCcEEEEEEecCCCC-ccccchhhhcc-hHHHHhcc-cCCcEEEEECCchhhHHHHHHHHH
Q 005624 579 NRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT-KEYVQHKMMEK-SSDIWNML-SEGAYLYVCGDAKSMARDVHRTLH 655 (687)
Q Consensus 579 ~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~-k~yVq~~l~e~-~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~ 655 (687)
+++.|++|++||+++.+.+.+++++++|||++.. ++||||+|.++ .+.+++++ ..+++|||||| ++|+++|.++|.
T Consensus 544 ~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp-~~M~~~V~~~L~ 622 (688)
T 1tll_A 544 QSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAIQ 622 (688)
T ss_dssp CTTTTCTTHHHHHHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHSSHHHHHHHHHTSCCEEEEEEE-HHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHcCCceEEEEEECCCCCCCccchhhhhHHhHHHHHHHhhccCCcEEEEeCC-HHHHHHHHHHHH
Confidence 9976899999999999999888999999998754 89999999998 78888877 67899999999 689999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 656 TIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 656 ~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
++++++++++.++|++|+++|+.++||++|+|
T Consensus 623 ~i~~~~gg~~~~~a~~~l~~l~~~~ry~~Evf 654 (688)
T 1tll_A 623 RIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 654 (688)
T ss_dssp HHHHTTTCCCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHcCCCCHHHHHHHHHhhhhcCCEEEEec
Confidence 99999999999999999999999999999998
|
| >3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-80 Score=684.08 Aligned_cols=401 Identities=41% Similarity=0.774 Sum_probs=353.8
Q ss_pred ccccceEEEEecCCCcc---cCccc--cCCCCCCccccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCC
Q 005624 279 AAISEYRVVFYDNADAS---VGEKS--WGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGD 353 (687)
Q Consensus 279 ~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD 353 (687)
..+++|+++.++..+.. ..+.. ....++..+|+.+||+.|+|+.|++|+. .++|+|+||||||++++++|+|||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~ge~~~~~~~~~~~~~~~~~~p~~a~v~~n~~Lt~-~~~r~~~hie~dl~~s~l~Y~~GD 99 (458)
T 3qfs_A 21 MSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGD 99 (458)
T ss_dssp ---CCEEEEECTTCCGGGCBSSCSSSTTTTTSCCSCCCSSSCEEEEEEEEEECCS-SSSSCEEEEEEECTTSCCCCCTTC
T ss_pred cceeceEEEEccCccccccccCChhhcccccccCCCCCCCCCEEEEEEEEEEcCC-CCCCCEEEEEEEeCCCCcccCCCC
Confidence 46788999988654422 22211 1335577889999999999999999997 578999999999999999999999
Q ss_pred eEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcCCCCCCCCCCC-cCcHHHHHHHhhhhcCCCCh---------
Q 005624 354 HVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKK--------- 423 (687)
Q Consensus 354 ~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l~~~~~~~~~p-p~tl~~~l~~y~Dl~~~p~k--------- 423 (687)
||+|||.|+++.|++++++||+++|+.++++..+.+ ...+.||| |+|++++|++|+||+++|+|
T Consensus 100 ~l~V~p~N~~~~V~~~l~~l~~~~d~~v~~~~~~~~------~~~~~p~~~~~tl~~~l~~~~di~~~p~~~~l~~la~~ 173 (458)
T 3qfs_A 100 HVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEE------SNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQY 173 (458)
T ss_dssp EEEECCCCCHHHHHHHHHHHTCCTTCEEEEEESSTT------CSCCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGG
T ss_pred EEEEEeeCCHHHHHHHHHHhCcCCCceEEecCCCcc------cccCCCCCCCeeHHHHHHhcEeccCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999864432 12356888 99999999999999999986
Q ss_pred ---------------------hHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEE
Q 005624 424 ---------------------DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHV 482 (687)
Q Consensus 424 ---------------------~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~i 482 (687)
++|.+|+...+++++|||.+||++++|+++|++. +|+++||+|||||+|..++++++|
T Consensus 174 a~~~~ek~~L~~l~~~~~~~~~~~~~~~~~~~~~ildvL~~fps~~~p~~~ll~~-lp~l~pR~YSIsSsp~~~~~~i~l 252 (458)
T 3qfs_A 174 ASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCEL-LPRLQARYYSIASSSKVHPNSVHI 252 (458)
T ss_dssp BCSHHHHHHHHHHHSCSHHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTCTTEEEE
T ss_pred cCCHHHHHHHHHHhccCcccHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHhh-CCCCcceeEeeccCcccCCCEEEE
Confidence 2478888889999999999999999999999975 599999999999999877899999
Q ss_pred EEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhh
Q 005624 483 TCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ 562 (687)
Q Consensus 483 tv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~ 562 (687)
+|++|.+.+..|+.+.|+||+||+++.++++...+..++|+++.|.|++|.++.+|+||||+||||||||+|+|+|..+.
T Consensus 253 tV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~ 332 (458)
T 3qfs_A 253 CAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLR 332 (458)
T ss_dssp EEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHH
Confidence 99999998888999999999999999887643222358899999999999888899999999999999999999987654
Q ss_pred hcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCCccccchhhhcchHHHHhcccCCcEEEEECC
Q 005624 563 EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGD 642 (687)
Q Consensus 563 ~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~ 642 (687)
..+...++++||||||++..|++|++||+++.+.|.++++++||||++..|+||||+|.++.+.+|+++.++++||||||
T Consensus 333 ~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l~~l~~a~SRd~~~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp 412 (458)
T 3qfs_A 333 QQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGD 412 (458)
T ss_dssp HHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEEE
T ss_pred hcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCCCEEEEEEECCCCCcccHhHHHHHhHHHHHHHhcCCCEEEEECC
Confidence 44434579999999999755999999999999999888999999999888999999999999999999988999999999
Q ss_pred chhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 643 AKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 643 a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 413 ~~~M~~~V~~~L~~i~~~~g~~~~~~A~~~~~~l~~~~RY~~Dvw 457 (458)
T 3qfs_A 413 ARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 457 (458)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEEec
Confidence 668999999999999999999999999999999999999999999
|
| >2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-74 Score=654.04 Aligned_cols=380 Identities=34% Similarity=0.633 Sum_probs=325.5
Q ss_pred CCCccccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCC--CceEE
Q 005624 305 NGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSP--DTYFS 382 (687)
Q Consensus 305 ~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~--d~~~~ 382 (687)
++..+|+..+|+.|+|+.+++|++++++|+|+||+||+++++++|+|||||+|||.|+++.|+++|++||+++ +..|.
T Consensus 104 ~~~~~~~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~ 183 (539)
T 2qtl_A 104 SQVSVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVL 183 (539)
T ss_dssp ---------CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCCHHHHHHHHHHTTCGGGTTSEEE
T ss_pred cccCCCCCCCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCCHHHHHHHHHHhCCCccCCeEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999985 56788
Q ss_pred EeeCCCCCCcCCCCCCCCCCC-cCcHHHHHHHhhhhcCCCCh----------------------------hHHHHHHHhc
Q 005624 383 LHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKK----------------------------DEYAQWIVAS 433 (687)
Q Consensus 383 i~~~~~~~~~l~~~~~~~~~p-p~tl~~~l~~y~Dl~~~p~k----------------------------~~y~~~i~~~ 433 (687)
++..+.... .+..++++|| |||++++|++|+||+++|+| ++|.+|+...
T Consensus 184 ~~~~~~~~~--~~~~~p~~~p~~~tl~~~L~~~lDi~~~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~ 261 (539)
T 2qtl_A 184 LKIKADTKK--KGATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDA 261 (539)
T ss_dssp EEECTTCCC--TTCCCCTTSCTTCBHHHHHHHTBCTTSCCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTTT
T ss_pred EeccccccC--CCccCCCCCCCcccHHHHHHHHhhhcCCCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHHHHHHHhhc
Confidence 876443221 1235678899 99999999999999999986 4688899999
Q ss_pred CCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeC--CCCccccCccchhhccc---
Q 005624 434 QRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKT--PTGRVHKGLCSTWMKNS--- 508 (687)
Q Consensus 434 ~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~--~~g~~~~G~~S~~L~~~--- 508 (687)
+++++|+|.+||++++|+++|++. +|+++||+|||||+|..+++.++|+|+++.+.+ ..++.+.|+||+||+++
T Consensus 262 ~~~lldvL~~fps~~~p~~~ll~~-lp~l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~ 340 (539)
T 2qtl_A 262 CACLLDLLLAFPSCQPPLSLLLEH-LPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVAS 340 (539)
T ss_dssp TCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTT
T ss_pred CCCHHHHHHhCCCcCCCHHHHHHh-CcCCcceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhh
Confidence 999999999999999999999975 699999999999999766799999999887743 44567889999999998
Q ss_pred --------CCCCC-CCCCceeeEEEee-CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC--CCCCcEEEEEe
Q 005624 509 --------LPMEK-SNDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG--AELGPSLLFFG 576 (687)
Q Consensus 509 --------~~~~~-~~~~~~~~v~v~~-~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~--~~~~~~~LffG 576 (687)
.+|+. ...+..++|+++. +.|+||.++.+|+||||+||||||||||+|+|....+.+ ...++++||||
T Consensus 341 ~~~~~~~~~~Gd~~~~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG 420 (539)
T 2qtl_A 341 VLQPNIHASHEDSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFG 420 (539)
T ss_dssp TC--------------CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEE
T ss_pred hccccccCCCCCccccCceEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEE
Confidence 34330 0111268888886 489999888899999999999999999999987655332 23489999999
Q ss_pred eccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC------CccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHH
Q 005624 577 CRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARD 649 (687)
Q Consensus 577 ~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~------~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~ 649 (687)
||+++.|++|++||+++.+.|.++++++||||++. .|+||||+|.++.+++|+++ ..+++||||||+++|+++
T Consensus 421 ~R~~~~D~ly~dEL~~~~~~g~~~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~~~ 500 (539)
T 2qtl_A 421 CRHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKD 500 (539)
T ss_dssp ESCTTTCCTTHHHHHHHHHTTSSCEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred ECCcchhhHHHHHHHHHHHhCCCcEEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHHHHHH
Confidence 99995599999999999999998899999999976 79999999999999999998 578999999996699999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 650 VHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 650 V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 501 V~~~L~~i~~~~~~~~~~~A~~~l~~l~~~~RY~~Dvw 538 (539)
T 2qtl_A 501 VHDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIW 538 (539)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 99999999999999999999999999999999999999
|
| >4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-73 Score=624.41 Aligned_cols=357 Identities=35% Similarity=0.636 Sum_probs=314.8
Q ss_pred CCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCCCCcC
Q 005624 314 HPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPL 393 (687)
Q Consensus 314 ~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~l 393 (687)
.++.|+|+.|++|++++++|+|+|||||++ ++++|+|||||+|||.|+++.|+++|++||+++++.+.+.....
T Consensus 5 ~~~~a~v~~n~~Lt~~~~~~~~~hie~~l~-~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~----- 78 (393)
T 4dql_A 5 GAFSTNVVASKELQQPGSARSTRHLEIELP-KEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEE----- 78 (393)
T ss_dssp CCEEEEEEEEEECSCTTCSCCEEEEEEECC-TTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEECCCC--------
T ss_pred CcEEEEEEeEEEcCCCCCCceEEEEEEECC-CCCccCCCCEEEEEccCCHHHHHHHHHHhCcCCCCeEEEeCCCC-----
Confidence 567899999999999999999999999997 58999999999999999999999999999999999887754221
Q ss_pred CCCCCCCCCC-cCcHHHHHHHhhhhcCCCCh-------------------------hHHHHHHHhcCCCHHHHHHhCCCC
Q 005624 394 GKSTLPPTFP-PCSLRTALTKYADLLSSPKK-------------------------DEYAQWIVASQRSLLEVMSEFPSA 447 (687)
Q Consensus 394 ~~~~~~~~~p-p~tl~~~l~~y~Dl~~~p~k-------------------------~~y~~~i~~~~~~l~dvl~~fps~ 447 (687)
.....|++ |||++++|++ +||+++|+| ++|.+|+...+++++|+|.+||++
T Consensus 79 --~~~~~p~~~~~tl~~~l~~-~di~~~~~~~~l~~la~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~ldvL~~fps~ 155 (393)
T 4dql_A 79 --KLAHLPLAKTVSVEELLQY-VELQDPVTRTQLRAMAAKTVCPPHKVELEALLEKQAYKEQVLAKRLTMLELLEKYPAC 155 (393)
T ss_dssp ----------CCEEHHHHTTS-BCSSSBCCHHHHHHHHHTCCSHHHHHHHHHTTSHHHHHHHTTTTTCBHHHHHHHCTTC
T ss_pred --ccccCCCCCcEEHHHHHHh-ccccCCCCHHHHHHHHHhCCCHHHHHHHHHHhCchHHHHHHhccCCCHHHHHHhCCCC
Confidence 11234677 8999999999 999999887 347778888899999999999999
Q ss_pred CCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCc-cccCccchhhcccCCCCCCCCCceeeEEEe-
Q 005624 448 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGR-VHKGLCSTWMKNSLPMEKSNDCSWAPIFVR- 525 (687)
Q Consensus 448 ~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~-~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~- 525 (687)
++|+++|++. +|+++||+|||||+|..+++.++|+|+++.+.+..|+ .+.|+||+||+++.+|+ .++++++
T Consensus 156 ~~p~~~~l~~-lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd------~v~v~v~~ 228 (393)
T 4dql_A 156 EMKFSEFIAL-LPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGD------TITCFIST 228 (393)
T ss_dssp CCCHHHHHHT-SCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTC------EEEEEEEC
T ss_pred CCCHHHHHHh-CCCCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcC------EEEEEEEc
Confidence 9999999975 6999999999999998778999999999888776664 46799999999987765 4677665
Q ss_pred -eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005624 526 -QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 604 (687)
Q Consensus 526 -~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~ 604 (687)
.|+|++|.++.+|+||||+|||||||++|+|+|......+...++++||||||++..|++|++||+++.+.+.+ ++++
T Consensus 229 P~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~l-~l~~ 307 (393)
T 4dql_A 229 PQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGII-TLHT 307 (393)
T ss_dssp CSSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSC-EEEE
T ss_pred CCCCcccCccCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhCCCe-EEEE
Confidence 47899998888999999999999999999999876655554567899999999965599999999999988766 7999
Q ss_pred EEec-CCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeE
Q 005624 605 AFSR-EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYL 683 (687)
Q Consensus 605 afSr-~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~ 683 (687)
+||| ++..|+||||++.++.+.+++++.++++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++|||+
T Consensus 308 a~Sr~~~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~ 387 (393)
T 4dql_A 308 AFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYA 387 (393)
T ss_dssp EESSCTTSCCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCEE
T ss_pred EEeCCCCCCCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEE
Confidence 9999 556899999999999999999998999999999988999999999999999999999999999999999999999
Q ss_pred EeeC
Q 005624 684 RDVW 687 (687)
Q Consensus 684 ~Dvw 687 (687)
+|||
T Consensus 388 ~dv~ 391 (393)
T 4dql_A 388 KDVW 391 (393)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9999
|
| >1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-70 Score=597.82 Aligned_cols=347 Identities=32% Similarity=0.600 Sum_probs=314.9
Q ss_pred ccccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCC
Q 005624 308 AVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDK 387 (687)
Q Consensus 308 ~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~ 387 (687)
..|+.++|+.|+|+.|++|++++++|+|+||+||+++++++|+|||||+|||+|+++.|++++++||+++|+.+.+.
T Consensus 4 ~~~~~~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~--- 80 (374)
T 1ddg_A 4 SPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVE--- 80 (374)
T ss_dssp CCCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEET---
T ss_pred CCCCCCCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEEC---
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999988873
Q ss_pred CCCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCCh----------------------hHHHHHHHhcCCCHHHHHHhCC
Q 005624 388 EDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK----------------------DEYAQWIVASQRSLLEVMSEFP 445 (687)
Q Consensus 388 ~~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k----------------------~~y~~~i~~~~~~l~dvl~~fp 445 (687)
+ .|||++++|++|+||+ +|+| ++|.+|+. +++++|+|.+||
T Consensus 81 --~------------~~~tl~~~l~~~~di~-~p~~~~l~~la~~~~~~~L~~l~~~~~~~~~~~~--~~~~~~vl~~~p 143 (374)
T 1ddg_A 81 --G------------KTLPLNEALQWHFELT-VNTANIVENYATLTRSETLLPLVGDKAKLQHYAA--TTPIVDMVRFSP 143 (374)
T ss_dssp --T------------EEEEHHHHHHHHBCCS-CCCHHHHHHHHHHHTCTTTGGGTTCTHHHHHHHH--HSCHHHHHHHSC
T ss_pred --C------------CCccHHHHHHhcccCC-CCCHHHHHHHHHHCCCHHHHHHhcChHHHHHHHc--CCCHHHHHHHCC
Confidence 1 1789999999999999 7775 46778876 589999999999
Q ss_pred CCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEE
Q 005624 446 SAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 524 (687)
Q Consensus 446 s~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v 524 (687)
+ ++++|||+.+ .+++++|+|||||+|..+++.++|+|+++.+.+. |+.+.|+||+||++ +.+|+ .++|++
T Consensus 144 ~-~~~~Gq~v~l-~~~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~Gd------~v~v~~ 214 (374)
T 1ddg_A 144 A-QLDAEALINL-LRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEEG------EVRVFI 214 (374)
T ss_dssp C-CCCHHHHHHH-SCBCCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCSSC------EEEEEE
T ss_pred C-CCCHHHHHhh-ccCCCCccceecCCCCCCCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCCCC------EEEEEE
Confidence 9 9999999975 5889999999999998667899999998877665 77789999999998 66654 578888
Q ss_pred e-eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEE
Q 005624 525 R-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 603 (687)
Q Consensus 525 ~-~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~ 603 (687)
+ .+.|++|.++.+|+||||+|||||||++|++++...+. .++++||||||+++.|++|++||+++.+.+.+++++
T Consensus 215 ~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~~----~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~~~l~ 290 (374)
T 1ddg_A 215 EHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEA----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRID 290 (374)
T ss_dssp ECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTC----CSCEEEEEEESCHHHHCTTHHHHHHHHHTTSCCEEE
T ss_pred eeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcCC----CCCEEEEEEeCCchhhhhHHHHHHHHHHhCCCcEEE
Confidence 5 46899998888999999999999999999999987542 378999999999844999999999999999888999
Q ss_pred EEEecCCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeE
Q 005624 604 VAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYL 683 (687)
Q Consensus 604 ~afSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~ 683 (687)
++|||++..|+|||++|.++.+.+++++.++++|||||++++|+++|.++|.+|++++++++.++|++|+++|+++|||+
T Consensus 291 ~a~Srd~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCG~p~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~ 370 (374)
T 1ddg_A 291 LAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQ 370 (374)
T ss_dssp EEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECTTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCEE
T ss_pred EEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeE
Confidence 99999988899999999999999999887899999999448999999999999999999999999999999999999999
Q ss_pred EeeC
Q 005624 684 RDVW 687 (687)
Q Consensus 684 ~Dvw 687 (687)
+|||
T Consensus 371 ~dv~ 374 (374)
T 1ddg_A 371 RDVY 374 (374)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9999
|
| >1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-70 Score=610.28 Aligned_cols=371 Identities=35% Similarity=0.655 Sum_probs=324.8
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCC-CCccCCCCeEEEeccCCHHHHHHHHHHhCC--CCCceEEEee
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCENLSETVEEALSLLGL--SPDTYFSLHT 385 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~-~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l--~~d~~~~i~~ 385 (687)
.|+.++|+.|+|+.|++|++++++|+|+|||||++++ +++|+|||||+|||.|+++.|++++++||+ ++|+.++++.
T Consensus 24 ~~~~~~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~d~~v~~~~ 103 (435)
T 1f20_A 24 NVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEM 103 (435)
T ss_dssp HHHTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEE
T ss_pred ccccCCcEEEEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecCCHHHHHHHHHHhCCCCCCCeEEEEec
Confidence 4677899999999999999999999999999999875 799999999999999999999999999976 7789998875
Q ss_pred CCCCCCcCC---CCCCCCCCCcCcHHHHHHHhhhhcCCCCh--------------------------hHHHHHHHhcCCC
Q 005624 386 DKEDGTPLG---KSTLPPTFPPCSLRTALTKYADLLSSPKK--------------------------DEYAQWIVASQRS 436 (687)
Q Consensus 386 ~~~~~~~l~---~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k--------------------------~~y~~~i~~~~~~ 436 (687)
.+++..+.. ....+.+|||||++++|++|+||+++|+| ++|.+|+...+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~p~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~ 183 (435)
T 1f20_A 104 LEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQEYEEWKWGKNPT 183 (435)
T ss_dssp EEEESSSTTCEEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTTCSHHHHHHHHHHCCC
T ss_pred cccccCCCCccccccccCCCCCccHHHHHHhceecCCCCCHHHHHHHHHHCCCHHHHHHHHHhhcCHHHHHHHHhccCCC
Confidence 322111110 01224577899999999999999999986 4688999999999
Q ss_pred HHHHHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCC--ccccCccchhhcccCCCCCC
Q 005624 437 LLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG--RVHKGLCSTWMKNSLPMEKS 514 (687)
Q Consensus 437 l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g--~~~~G~~S~~L~~~~~~~~~ 514 (687)
++|+|.+||++++|+++++.. +|+++||+|||||+|..+++.++++|+++.+.++.| +.+.|+||+||+++.+|+
T Consensus 184 i~~vl~~fps~~~p~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd-- 260 (435)
T 1f20_A 184 MVEVLEEFPSIQMPATLLLTQ-LSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADD-- 260 (435)
T ss_dssp HHHHHHHSTTBCBCHHHHHHH-SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTC--
T ss_pred HHHHHHhCCcCCCCHHHHHHh-CCCCCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCC--
Confidence 999999999999999999975 699999999999999876789999999887776644 678899999999887765
Q ss_pred CCCceeeEEEe-eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhh-cCCCCCcEEEEEeeccCCcccccHHHHHH
Q 005624 515 NDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGCRNRKMDYIYEDELNN 592 (687)
Q Consensus 515 ~~~~~~~v~v~-~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~-~~~~~~~~~LffG~R~~~~D~ly~del~~ 592 (687)
.++|+++ .++|++|.++.+|+||||+|||||||++|++++..... .+...++++||||||+++.|++|++||++
T Consensus 261 ----~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~ 336 (435)
T 1f20_A 261 ----VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQ 336 (435)
T ss_dssp ----EEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHH
T ss_pred ----EEEEEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHHH
Confidence 5788886 56899998888999999999999999999999987431 22234799999999999778999999999
Q ss_pred HHHcCCCcEEEEEEecCCCC-ccccchhhhcc-hHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHH
Q 005624 593 FVQSGALSQLIVAFSREGPT-KEYVQHKMMEK-SSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 669 (687)
Q Consensus 593 ~~~~g~~~~l~~afSr~~~~-k~yVq~~l~e~-~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a 669 (687)
+.+.+.+++++++|||++.. ++||||+|.++ .+.+++++ ..+++|||||| ++|+++|.++|.+|+.++++++.++|
T Consensus 337 ~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp-~~M~~~V~~~L~~i~~~~~~~~~~~a 415 (435)
T 1f20_A 337 AKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAIQRIMTQQGKLSEEDA 415 (435)
T ss_dssp HHHTTSEEEEEEEESSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEEC-HHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHcCCccEEEEEECCCCCCCCcchhhHHHhhhHHHHHHHHhcCCcEEEEeCC-hhHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 99999888899999998654 89999999988 78888877 57899999999 68999999999999999999999999
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 005624 670 ESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 670 ~~~~~~l~~~gRy~~Dvw 687 (687)
++|+++|+++|||++|||
T Consensus 416 ~~~~~~l~~~~RY~~Dv~ 433 (435)
T 1f20_A 416 GVFISRLRDDNRYHEDIF 433 (435)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHCCCEEEEec
Confidence 999999999999999999
|
| >1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=327.36 Aligned_cols=273 Identities=24% Similarity=0.453 Sum_probs=222.9
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCC
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (687)
.++..+|+.++|+.+++++..+++++++||+|+.++. +.|+||++|.|+++|.. .
T Consensus 31 ~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~~~------------------------~ 85 (314)
T 1fnb_A 31 KFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE-IPYREGQSVGVIPDGED------------------------K 85 (314)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC-CCCCTTCEEEEECSSBC------------------------T
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC-CCcCCCCEEEEecCCCC------------------------c
Confidence 4556778899999999999877788999999998764 89999999999877531 0
Q ss_pred CCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccc
Q 005624 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYS 468 (687)
Q Consensus 389 ~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YS 468 (687)
++ .++.+|+||
T Consensus 86 ~g---------------------------------------------------------------------~~~~~R~yS 96 (314)
T 1fnb_A 86 NG---------------------------------------------------------------------KPHKLRLYS 96 (314)
T ss_dssp TS---------------------------------------------------------------------SBCCCEEEE
T ss_pred CC---------------------------------------------------------------------CcCCceeEe
Confidence 00 013579999
Q ss_pred cCCCCCC---CCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCc-ccCCCCCCCeEEEec
Q 005624 469 ISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNF-KLPADAKVPIIMIGP 544 (687)
Q Consensus 469 IsSsp~~---~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F-~lp~~~~~PiImIa~ 544 (687)
|+|+|.. .++.++|+|+.+.+.+..|+.+.|.||+||+++.+|+ .+.|..+.|+| .+|.+...|+||||+
T Consensus 97 i~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~~~~~~~~~~~~~vlIag 170 (314)
T 1fnb_A 97 IASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGA------EVKLTGPVGKEMLMPKDPNATIIMLGT 170 (314)
T ss_dssp CCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTC------EEEEEEEECSTTCCBSCTTCEEEEEEE
T ss_pred cCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCC------EEEEEeccCCceeCCCCCCCCEEEEeC
Confidence 9999863 3578999998776666667777899999999987765 46777777876 456556789999999
Q ss_pred CCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC----Cccccch
Q 005624 545 GTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP----TKEYVQH 618 (687)
Q Consensus 545 GTGIAPfrsflq~r~~~~~~~-~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~----~k~yVq~ 618 (687)
|||||||++|++++......+ ...++++||||||+++ |++|.+||+++.+.+. .+++++++||+++ .++|||+
T Consensus 171 GtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~ 249 (314)
T 1fnb_A 171 GTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQT 249 (314)
T ss_dssp GGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGG-GCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHH
T ss_pred CccHHHHHHHHHHHHHhccccccCCCCEEEEEecCCHH-HhhhHHHHHHHHHhCCCcEEEEEEECCCCcccCCCceechH
Confidence 999999999999987543111 1136899999999986 9999999999998765 6789999999743 5789999
Q ss_pred hhhcchHHHHhccc-CCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 619 KMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 619 ~l~e~~~~v~~~i~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
+|.+..+.+++.+. .++.||+||| ++|+++|.++|.+++.+.+ . +|++++++|+++|||++|||
T Consensus 250 ~l~~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g-~---~~~~~~~~l~~~~r~~~d~~ 314 (314)
T 1fnb_A 250 RMAQYAVELWEMLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAAEG-I---DWIEYKRQLKKAEQWNVEVY 314 (314)
T ss_dssp HHHTTHHHHHHHTTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-C---CHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHhHHHHHHHHhcCCeEEEEECC-HHHHHHHHHHHHHHHHHhC-c---hHHHHHHHHHHCCcEEEecC
Confidence 99988777777663 6889999999 8999999999999998765 3 47889999999999999999
|
| >2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-37 Score=323.41 Aligned_cols=274 Identities=25% Similarity=0.449 Sum_probs=221.4
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCC
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (687)
.|+...|+.++|+.+++|++.+++++++|++|++.+..+.|+||+++.|+++|.. .
T Consensus 15 ~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~------------------------~ 70 (304)
T 2bmw_A 15 LYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVD------------------------K 70 (304)
T ss_dssp SBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBC------------------------T
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCc------------------------c
Confidence 4556778899999999999888888999999998866789999999999877631 0
Q ss_pred CCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccc
Q 005624 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYS 468 (687)
Q Consensus 389 ~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YS 468 (687)
++ .+..+|+||
T Consensus 71 ~g---------------------------------------------------------------------~~~~~R~yS 81 (304)
T 2bmw_A 71 NG---------------------------------------------------------------------KPEKLRLYS 81 (304)
T ss_dssp TS---------------------------------------------------------------------CBCCCEEEE
T ss_pred cC---------------------------------------------------------------------CCCCCccee
Confidence 00 013579999
Q ss_pred cCCCCCC---CCCeEEEEEEEEEeeCCC-CccccCccchhhcccCCCCCCCCCceeeEEEeeCCc-ccCCCCCCCeEEEe
Q 005624 469 ISSSPRV---APSRIHVTCALVYEKTPT-GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNF-KLPADAKVPIIMIG 543 (687)
Q Consensus 469 IsSsp~~---~~~~i~itv~~v~~~~~~-g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F-~lp~~~~~PiImIa 543 (687)
|+|+|.. .++.++|+|+.+.+.++. |..+.|.||+||+++.+|+ .+.|..+.|.| .+|.+..+|+||||
T Consensus 82 ias~~~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~~~~~~~~~~~~~vlIa 155 (304)
T 2bmw_A 82 IASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGS------EVKITGPVGKEMLLPDDPEANVIMLA 155 (304)
T ss_dssp BCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTC------EEEEEEEECSSSCCCSCTTCEEEEEE
T ss_pred cCCCCcccCCCCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCC------EEEEEeccCCceeCCCCCCCCEEEEe
Confidence 9999853 357899999876554432 4456899999999987765 46777777765 56766678999999
Q ss_pred cCCcchhHHHHHHHHHHhhhc----C-CCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC----Cc
Q 005624 544 PGTGLAPFRGFLQERFALQEA----G-AELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP----TK 613 (687)
Q Consensus 544 ~GTGIAPfrsflq~r~~~~~~----~-~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~----~k 613 (687)
+|||||||++|+++++..... + ...++++||||||+.+ |++|.+||+++.+.+. .+++++++||+++ .+
T Consensus 156 gGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~el~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 234 (304)
T 2bmw_A 156 GGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTP-NILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGR 234 (304)
T ss_dssp EGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSSB
T ss_pred cCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEEEEeCChH-hcchHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCc
Confidence 999999999999998654311 0 1136899999999986 9999999999988764 6789999999742 47
Q ss_pred cccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 614 EYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 614 ~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
.|||+++.++.+.+++++ ..++.||+||| ++|+++|+++|.+++.+.| ++ +++++++|+++|||++|||
T Consensus 235 ~~v~~~l~~~~~~l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~~~~~g-~~---~~~~~~~m~~~~ry~~e~~ 304 (304)
T 2bmw_A 235 MYIQDRVAEHADQLWQLIKNQKTHTYICGP-PPMEEGIDAALSAAAAKEG-VT---WSDYQKDLKKAGRWHVETY 304 (304)
T ss_dssp CCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-CC---HHHHHHHHHHTTCEEEEEC
T ss_pred ceehHHHHHhHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-cc---HHHHHHHHHHcCCeEEecC
Confidence 899999998888888766 45789999999 8999999999999998764 44 6789999999999999999
|
| >3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-37 Score=324.18 Aligned_cols=273 Identities=23% Similarity=0.447 Sum_probs=225.2
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCC
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (687)
.|+...|+.++|+.+++++..+....++||+|+.. ..+.|+||.|+.|.++... .
T Consensus 27 ~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~-~~~~~~pGQ~v~l~~~~~~------------------------~ 81 (310)
T 3vo2_A 27 KYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTE-GEIPYREGQSIGIIADGED------------------------K 81 (310)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECT-TCCCCCTTCEEEEECSSBC------------------------T
T ss_pred eecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCC-CCCcccCCCEEEEECCCcC------------------------C
Confidence 46678899999999999987767778999999965 4789999999999754210 0
Q ss_pred CCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccc
Q 005624 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYS 468 (687)
Q Consensus 389 ~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YS 468 (687)
+| -++.+|+||
T Consensus 82 ~g---------------------------------------------------------------------~~~~~R~yS 92 (310)
T 3vo2_A 82 NG---------------------------------------------------------------------KPHKLRLYS 92 (310)
T ss_dssp TS---------------------------------------------------------------------CBCCCEEEE
T ss_pred CC---------------------------------------------------------------------CcCcceeee
Confidence 00 123579999
Q ss_pred cCCCCCC---CCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcc-cCCCCCCCeEEEec
Q 005624 469 ISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK-LPADAKVPIIMIGP 544 (687)
Q Consensus 469 IsSsp~~---~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~-lp~~~~~PiImIa~ 544 (687)
|+|+|.. .++.++|+|+.+.+.+..|+.+.|.||+||+++.+|+ .+.|..+.|.|. +|.+..+|+||||+
T Consensus 93 ias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~~~~~~~~~~~~~vlIag 166 (310)
T 3vo2_A 93 IASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGA------DVKITGPVGKEMLMPKDPNATVIMLAT 166 (310)
T ss_dssp CCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTC------EEEEEEEECSTTCCBSCTTCEEEEEEE
T ss_pred cCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCC------EEEEEeccCCcccCCCCCCCCEEEEeC
Confidence 9999963 3578999998877777778888999999999987765 466777777654 56667789999999
Q ss_pred CCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC----Cccccch
Q 005624 545 GTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP----TKEYVQH 618 (687)
Q Consensus 545 GTGIAPfrsflq~r~~~~~~~-~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~----~k~yVq~ 618 (687)
|||||||++|++++....... ...++++||||||+.+ |++|.+||+++.+.+. .+++++++||++. .++|||+
T Consensus 167 GtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~v~~~~sr~~~~~~g~~~~v~~ 245 (310)
T 3vo2_A 167 GTGIAPFRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSD-SLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAGEKMYIQT 245 (310)
T ss_dssp GGGGHHHHHHHHHHHSSCCTTCCCCSEEEEEEEESSGG-GCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHH
T ss_pred CcchhHHHHHHHHHHHhhcccccCCCcEEEEEEecChh-hcccHHHHHHHHHhCCCCEEEEEEECCCCCCCCCcceehHH
Confidence 999999999999987543211 1136899999999997 9999999999998865 6789999999753 5789999
Q ss_pred hhhcchHHHHhccc-CCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 619 KMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 619 ~l~e~~~~v~~~i~-~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
++.+..+.+++++. +++.||+||| ++|+++|+++|.+++.+.+ + ++++|+++|+++|||++|||
T Consensus 246 ~l~~~~~~l~~~l~~~~~~vyvCGp-~~M~~~v~~~L~~~~~~~g-~---~~~~~~~~l~~~~r~~~e~y 310 (310)
T 3vo2_A 246 RMAEYREELWELLKKDNTYVYMCGL-KGMEKGIDDIMLNLAAKDG-I---DWMQYKKQLKKGEQWNVEVY 310 (310)
T ss_dssp HHHTTHHHHHHHHTSTTEEEEEEES-TTHHHHHHHHHHHHHHHTT-C---CHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHhcccCCcEEEEeCC-HHHHHHHHHHHHHHHHHcC-c---CHHHHHHHHHHCCceEEecC
Confidence 99998888888774 6899999999 8999999999999998875 3 47889999999999999999
|
| >2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-36 Score=328.98 Aligned_cols=274 Identities=25% Similarity=0.434 Sum_probs=223.1
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCC
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (687)
.|+...|+.++|+.+++++...++++++||+|++++..+.|+||++|.|++++.. .
T Consensus 116 ~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~------------------------~ 171 (402)
T 2b5o_A 116 IYRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGED------------------------K 171 (402)
T ss_dssp SSCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEE------------------------T
T ss_pred cccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCC------------------------c
Confidence 3566788999999999999877888999999998765689999999999876521 0
Q ss_pred CCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccc
Q 005624 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYS 468 (687)
Q Consensus 389 ~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YS 468 (687)
+| .+..+|+||
T Consensus 172 ~g---------------------------------------------------------------------~~~~~R~yS 182 (402)
T 2b5o_A 172 NG---------------------------------------------------------------------KPHKLRLYS 182 (402)
T ss_dssp TT---------------------------------------------------------------------EECCCEEEE
T ss_pred CC---------------------------------------------------------------------CccCceeee
Confidence 00 013579999
Q ss_pred cCCCCCC---CCCeEEEEEEEEEeeCC-CCccccCccchhhcccCCC-CCCCCCceeeEEEeeCCc-ccCCCCCCCeEEE
Q 005624 469 ISSSPRV---APSRIHVTCALVYEKTP-TGRVHKGLCSTWMKNSLPM-EKSNDCSWAPIFVRQSNF-KLPADAKVPIIMI 542 (687)
Q Consensus 469 IsSsp~~---~~~~i~itv~~v~~~~~-~g~~~~G~~S~~L~~~~~~-~~~~~~~~~~v~v~~~~F-~lp~~~~~PiImI 542 (687)
|+|+|.. .++.++|+|+.+.+.++ .++.+.|.||+||+++.+| + .+.|..+.|+| .+|.+..+|+|||
T Consensus 183 Ias~p~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d------~v~v~gP~G~~~~l~~~~~~~vvlI 256 (402)
T 2b5o_A 183 IASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTD------DVKITGPVGKEMLLPDDEDATVVML 256 (402)
T ss_dssp BCSCTTTTTTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTCC------CEEEEEEECSTTCCCSCTTCEEEEE
T ss_pred ccCCCccccCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCCc------eEEEEcccCCcccCCccCCCCEEEE
Confidence 9999863 25789999987655442 3455689999999998776 5 36677777775 5676667899999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC----Ccccc
Q 005624 543 GPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP----TKEYV 616 (687)
Q Consensus 543 a~GTGIAPfrsflq~r~~~~~~~-~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~----~k~yV 616 (687)
|+|||||||++|++++......+ ...++++||||||+++ |++|.+||+++.+.+. .+++++++||+++ .++||
T Consensus 257 AgGtGIaP~~s~l~~l~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~eL~~l~~~~~~~~~v~~~~S~~~~~~~g~~~~v 335 (402)
T 2b5o_A 257 ATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTA-NILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYV 335 (402)
T ss_dssp EEGGGGHHHHHHHHHHHTCCCSSCCCCSEEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSCBCCH
T ss_pred EcccCHHHHHHHHHHHHHhccccccccCCEEEEEecCCHH-HhHHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCccch
Confidence 99999999999999987543211 1136899999999986 9999999999998765 6789999999743 57899
Q ss_pred chhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 617 QHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 617 q~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
|++|.+..+.+++++ ..++.||+||| ++|+++|.++|.+++.+.+. .+++++++|+++|||++|||
T Consensus 336 ~~~l~~~~~~l~~~l~~~~~~vyvCGP-~~M~~~v~~~L~~~g~~~g~----~~~~~~~~m~~~~Ry~~e~~ 402 (402)
T 2b5o_A 336 QSRVSEYADELFEMIQKPNTHVYMCGL-KGMQPPIDETFTAEAEKRGL----NWEEMRRSMKKEHRWHVEVY 402 (402)
T ss_dssp HHHHHHTHHHHHHHHTSTTEEEEEEEC-GGGHHHHHHHHHHHHHHTTC----CHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHhHHHHHHHhccCCcEEEEECC-HHHHHHHHHHHHHHHHHcCc----hHHHHHHHHHHCCCEEEecC
Confidence 999999888888877 46889999999 89999999999999988753 47789999999999999999
|
| >2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=303.47 Aligned_cols=277 Identities=21% Similarity=0.338 Sum_probs=212.9
Q ss_pred ccCCCCeeEEEeeeecccCCCCCCc---------eEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCce
Q 005624 310 YDAQHPCRSNVAVRKELHTPSSDRS---------CTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTY 380 (687)
Q Consensus 310 ~~~~~p~~a~v~~~~~L~~~~~~r~---------~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~ 380 (687)
+....|+.++|+.+++|+...++++ ++||+|+.++..+.|+||+++.|.++|....
T Consensus 16 ~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~--------------- 80 (314)
T 2rc5_A 16 FKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIGQSGGVIPPGEDPE--------------- 80 (314)
T ss_dssp BBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTCCCCTTCEEEEECSSBCHH---------------
T ss_pred CCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcCcccCCCEEEEECCCCccc---------------
Confidence 4456788999999999997766666 9999999876668999999999998774210
Q ss_pred EEEeeCCCCCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcC
Q 005624 381 FSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVP 460 (687)
Q Consensus 381 ~~i~~~~~~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p 460 (687)
+.+. . +.+|
T Consensus 81 ---------g~~~----------------------~------------------------~~~~---------------- 89 (314)
T 2rc5_A 81 ---------KKAK----------------------G------------------------LADV---------------- 89 (314)
T ss_dssp ---------HHHT----------------------T------------------------CSCC----------------
T ss_pred ---------cCcc----------------------c------------------------hhhc----------------
Confidence 0000 0 0011
Q ss_pred CCcccccccCCCCCC---CCCeEEEEEEEEEeeCCCCcc-ccCccchhhcccCCCCCCCCCceeeEEEeeCCcc-cCC-C
Q 005624 461 RLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRV-HKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK-LPA-D 534 (687)
Q Consensus 461 ~l~pR~YSIsSsp~~---~~~~i~itv~~v~~~~~~g~~-~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~-lp~-~ 534 (687)
++.+|+|||+|+|.. .++.++|+|+++.+.++.|+. +.|.||+||.++.+|+ .+.|..+.|+|. +|. +
T Consensus 90 ~~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~~~~~~~~~ 163 (314)
T 2rc5_A 90 GYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGD------EVTMTGPSGKKFLLPNTD 163 (314)
T ss_dssp BCCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCTTC------EEEEEEEECSSSCCCSSC
T ss_pred CCCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCCcC------EEEEEeccCCceeCCCCC
Confidence 156899999999852 357899998876444444543 5799999999977765 467777778765 454 4
Q ss_pred CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC---
Q 005624 535 AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP--- 611 (687)
Q Consensus 535 ~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~--- 611 (687)
..+|+||||+|||||||++|++++..... ....++++||||||+++ |++|.+||+++.+++..+++++++||++.
T Consensus 164 ~~~~~vlIagGtGIaP~~s~l~~l~~~~~-~~~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~ 241 (314)
T 2rc5_A 164 FSGDIMFLATGTGIAPFIGMSEELLEHKL-IKFTGNITLVYGAPYSD-ELVMMDYLKGLESKHKNFKLITAISREEKNSF 241 (314)
T ss_dssp BCSCEEEEEEGGGGHHHHHHHHHHHTTCS-SCBCSCEEEEEEESSGG-GSCSHHHHHHHHHHHSSEEEEEEETTTCBCTT
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHHhcc-cCCCCcEEEEEEeCCHH-HHhHHHHHHHHHHhCCcEEEEEEECCCCCccc
Confidence 57899999999999999999999875421 11236899999999997 99999999999876556789999999742
Q ss_pred --CccccchhhhcchHHHHhcc-cCCcEEEEE-CCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 612 --TKEYVQHKMMEKSSDIWNML-SEGAYLYVC-GDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 612 --~k~yVq~~l~e~~~~v~~~i-~~~~~iYvC-G~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
.++|||+++.+..+.+++.+ ..++. |+| || ++|+++|++.|.++.. .++ .++.|+.+|+++|||++|+|
T Consensus 242 ~g~~~~v~~~l~~~~~~l~~~~~~~~~~-yvCGGp-~~m~~~v~~~L~~~g~--~~i---~~e~f~~~l~~~gr~~~e~~ 314 (314)
T 2rc5_A 242 DGGRMYISHRVREQAEAVKKILNGGGRF-YICGGP-KGMEKGVIEEIQKISG--NTG---TYEEFKHHLEGAHQLFVETY 314 (314)
T ss_dssp TSSBCCHHHHHHHTHHHHHHHHHHTCEE-EEEESS-TTTHHHHHHHHHHHHT--CCS---CHHHHHHHHHHTTCEEEEEC
T ss_pred CCCceehhHHHHHhHHHHHHHhhcCCeE-EEeCCc-HHHHHHHHHHHHHHHh--ccc---hHHHHHHHHHHCCCEEEecC
Confidence 46899999998877777766 34444 999 98 8999999999999865 233 46789999999999999999
|
| >3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=300.28 Aligned_cols=274 Identities=26% Similarity=0.416 Sum_probs=213.6
Q ss_pred ccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCCC
Q 005624 310 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKED 389 (687)
Q Consensus 310 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~ 389 (687)
++...++.++|+..+.++.++...+++++.|..+. .+.|+||.++.|..+.... ..+
T Consensus 23 ~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~-~~~~~pGQ~v~l~~~~~~~----------------------~~~ 79 (311)
T 3lo8_A 23 YKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENP----------------------KKP 79 (311)
T ss_dssp BBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTT-SSCCCTTCEEEEECSSBCT----------------------TST
T ss_pred cCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCC-CCcccCCCEEEEeCCCCcc----------------------ccC
Confidence 44567788999999999865555779999998764 5899999999886432100 000
Q ss_pred CCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCccccccc
Q 005624 390 GTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSI 469 (687)
Q Consensus 390 ~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSI 469 (687)
-.++.+|+|||
T Consensus 80 ---------------------------------------------------------------------g~~~~~R~ySi 90 (311)
T 3lo8_A 80 ---------------------------------------------------------------------GAPQNVRLYSI 90 (311)
T ss_dssp ---------------------------------------------------------------------TCBCCCEEEEB
T ss_pred ---------------------------------------------------------------------CCCCCceeeEe
Confidence 01235899999
Q ss_pred CCCCCC---CCCeEEEEEEEEEee-CCC---CccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCC--CCCCCeE
Q 005624 470 SSSPRV---APSRIHVTCALVYEK-TPT---GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPA--DAKVPII 540 (687)
Q Consensus 470 sSsp~~---~~~~i~itv~~v~~~-~~~---g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~--~~~~PiI 540 (687)
+|+|.. .++.++|+|+.+.+. +.. ++...|.+|+||+++.+|+ .+.|..+.|.|.+.. +...|+|
T Consensus 91 as~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~~~~~~~~~~~~~~v 164 (311)
T 3lo8_A 91 ASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGD------KIQLTGPSGKIMLLPEEDPNATHI 164 (311)
T ss_dssp CSCTTTTTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTC------EEEEEEEECCTTCCCCSCTTCEEE
T ss_pred cCCCcccCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcC------EEEEEeccCCcccCCCcCCCCCEE
Confidence 999964 247899998765322 222 2236799999999977765 467777778776533 3578999
Q ss_pred EEecCCcchhHHHHHHHHHHhhhcCCC-CCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC----Ccc
Q 005624 541 MIGPGTGLAPFRGFLQERFALQEAGAE-LGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP----TKE 614 (687)
Q Consensus 541 mIa~GTGIAPfrsflq~r~~~~~~~~~-~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~----~k~ 614 (687)
|||+|||||||++|++++......+.. .++++||||||+.+ |++|.+||+++.+.+. .+++++++||++. .++
T Consensus 165 lIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~ 243 (311)
T 3lo8_A 165 MIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD-SLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKM 243 (311)
T ss_dssp EEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGG-GCSSHHHHHHHHHHCTTTEEEEEEETTTC-------C
T ss_pred EEECCEEHHHHHHHHHHHHHhccccccCCCCEEEEEecCChH-HhhHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCcc
Confidence 999999999999999998764321111 26799999999987 9999999999998865 6789999999753 479
Q ss_pred ccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 615 YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 615 yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
|||+.+.+..+.+++++..++.||+||| ++|+++|+++|.+++.+.+ .++++++++|+++|||++|||
T Consensus 244 ~v~~~l~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g----~~~~~~~~~l~~~~ry~~e~y 311 (311)
T 3lo8_A 244 YVQDKIEEYSDEIFKLLDGGAHIYFCGL-KGMMPGIQDTLKKVAERRG----ESWDQKLAQLKKNKQWHVEVY 311 (311)
T ss_dssp CHHHHHHHTHHHHHHHHHTTCEEEEEEC-GGGHHHHHHHHHHHHHHTT----CCHHHHHHHHHHTTCEEEEEC
T ss_pred eehHHHHHHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHCCcEEEecC
Confidence 9999999988888877778899999999 8999999999999998875 367899999999999999999
|
| >3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=282.78 Aligned_cols=153 Identities=31% Similarity=0.472 Sum_probs=138.8
Q ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHH
Q 005624 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (687)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~ 181 (687)
...++|+|+|||||||||.+|++|++.+. .+ ..++++++++++++ ++..++.+||++||||+|+||+|++.
T Consensus 38 ~~~~kv~IlYgS~tGnte~~A~~La~~l~-~g--~~v~v~~l~~~~~~------~l~~~~~vI~~tsTyG~Ge~Pdna~~ 108 (219)
T 3hr4_A 38 ASRVRVTILFATETGKSEALAWDLGALFS-CA--FNPKVVCMDKYRLS------CLEEERLLLVVTSTFGNGDCPGNGEK 108 (219)
T ss_dssp HTSCEEEEEEECSSSHHHHHHHHHHHHHT-TT--SEEEEEEGGGCCGG------GGGTCSEEEEEEECBTTTBCCGGGHH
T ss_pred hcCCcEEEEEECCchHHHHHHHHHHHHHH-cC--CCeEEEEcccCCHh------HhccCCeEEEEEeccCCCcCCHHHHH
Confidence 34678999999999999999999999884 43 46789999999853 47789999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHH
Q 005624 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 261 (687)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 261 (687)
|+++|.... ..|++++||||||||++|++||.+++.++++|+++||++++|+|+||+..+.+++|+.|++.||++|+
T Consensus 109 F~~~L~~~~---~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~~g~~D~~~~~e~~~~~W~~~l~~~l~ 185 (219)
T 3hr4_A 109 LKKSLFMLK---ELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPMGEGDELSGQEDAFRSWAVQTFKAAC 185 (219)
T ss_dssp HHHHHHHCC---CCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSCCEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc---hhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeCCEEEecCCCcHHHHHHHHHHHHHHHH
Confidence 999998642 35899999999999999999999999999999999999999999999988899999999999999999
Q ss_pred hhhCC
Q 005624 262 NLLRD 266 (687)
Q Consensus 262 ~~~~~ 266 (687)
+.+..
T Consensus 186 ~~~~~ 190 (219)
T 3hr4_A 186 ETFDV 190 (219)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 98864
|
| >3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=292.83 Aligned_cols=291 Identities=23% Similarity=0.357 Sum_probs=206.6
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCC
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (687)
.|..++|+.++|+.+.+|+.++....++||+|+.. ..+.|.+|+.++|.|+..+..= ..+ . . ...
T Consensus 9 ~~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~GQ~~~i~~~~~~~~~-----~~~----~--~---~~~ 73 (316)
T 3jqq_A 9 LYTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHN-GLFKYLEGHTCGIIPYYNELDN-----NPN----N--Q---INK 73 (316)
T ss_dssp SSCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECT-TCCCCCTTCEEEECTTCC--------------------------
T ss_pred eecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCC-CCcceecCcEeEEECCCccccc-----ccc----c--c---ccc
Confidence 46788999999999999998888899999999985 4699999999999998764320 000 0 0 000
Q ss_pred CCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccc
Q 005624 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYS 468 (687)
Q Consensus 389 ~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YS 468 (687)
++.-+ -+ ++.++-.+ + . ...+-+...+|+||
T Consensus 74 ~~~~~----------~~------~~~~~h~~-----------------~---------~-------~~~~~g~~~~R~yS 104 (316)
T 3jqq_A 74 DHNII----------NT------TNHTNHNN-----------------I---------A-------LSHIKKQRCARLYS 104 (316)
T ss_dssp ------------------------------------------------------------------------CCCCEEEE
T ss_pred ccccc----------cc------cccccccc-----------------c---------c-------cccCCCcccceeee
Confidence 01000 00 00000000 0 0 00122567899999
Q ss_pred cCCCCCCCCCeEEEEEEEEEeeCC---CCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCC---CCCCeEEE
Q 005624 469 ISSSPRVAPSRIHVTCALVYEKTP---TGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPAD---AKVPIIMI 542 (687)
Q Consensus 469 IsSsp~~~~~~i~itv~~v~~~~~---~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~---~~~PiImI 542 (687)
|||+|.. +.++|+|+++.+.++ .++.+.|.||+||.++.+|+ .+.|..+.|.|.+|.+ ..+|+|||
T Consensus 105 IaS~p~~--~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~l~~~~~~~~~~vvlI 176 (316)
T 3jqq_A 105 ISSSNNM--ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKIND------DIYLTGAHGYFNLPNDAIQKNTNFIFI 176 (316)
T ss_dssp BCSCTTS--SSEEEEEECCBC---------CCBCHHHHHHHTCCTTC------EEEEEEEECCCCCCTTHHHHTCCEEEE
T ss_pred cccCCCC--CeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCC------EEEEEecCCceEcCCcccCCCCcEEEE
Confidence 9999964 579998876643321 23557899999999887765 4677777889999876 37899999
Q ss_pred ecCCcchhHHHHHHHHHHhhhc------CCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC---C
Q 005624 543 GPGTGLAPFRGFLQERFALQEA------GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP---T 612 (687)
Q Consensus 543 a~GTGIAPfrsflq~r~~~~~~------~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~---~ 612 (687)
|+|||||||++|++++...... +...++++||||||+++ |++|.+||+++.++.. .+++++++||++. .
T Consensus 177 AgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~eL~~l~~~~~~~~~~~~~~s~~~~~~g~ 255 (316)
T 3jqq_A 177 ATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNED-SILYLNELEYFQKMYPNNINIHYVFSYKQNSDAT 255 (316)
T ss_dssp EEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEEEEGGGCC---C
T ss_pred eCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHH-HhhcHHHHHHHHHhCCCcEEEEEEECCCcccCCC
Confidence 9999999999999998764321 11237899999999997 9999999999998754 6689999999752 6
Q ss_pred ccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 613 KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 613 k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
++|||+.+.+....+++++ ..++.||+||| ++|+++|.+.|.+. +.++. ...+|++.|+|
T Consensus 256 ~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP-~~m~~~v~~~l~~~----G~~~~----------v~~~rih~E~f 316 (316)
T 3jqq_A 256 SFYVQDEIYKRKTEFLNLFNNYKCELYICGK-KSIRYKVMDILKSH----DQFDE----------KKKKRVHVEVY 316 (316)
T ss_dssp BCCHHHHHHHTHHHHHHHHHHTCCEEEEEEC-STHHHHHHHHHHC--------CH----------HHHTTEEEEEC
T ss_pred ccchhHHHHHhHHHHHHhhccCCeEEEEeCC-HHHHHHHHHHHHHc----CCCcc----------cccccEEEEeC
Confidence 8999999999888888877 46899999999 89999888877643 33332 34578888876
|
| >1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=235.44 Aligned_cols=148 Identities=30% Similarity=0.632 Sum_probs=130.1
Q ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHH
Q 005624 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (687)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~ 181 (687)
..+++++|+|+|+|||||++|+.|++.+.+.+ ..+++++++++. .++..++.+||++||| +|++|+++..
T Consensus 19 ~~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g--~~v~v~~l~~~~-------~~l~~~d~vi~g~~Ty-~G~~p~~~~~ 88 (191)
T 1bvy_F 19 AHNTPLLVLYGSNMGTAEGTARDLADIAMSKG--FAPQVATLDSHA-------GNLPREGAVLIVTASY-NGHPPDNAKQ 88 (191)
T ss_dssp --CCCEEEEEECSSSHHHHHHHHHHHHHHTTT--CCCEEEEGGGST-------TCCCSSSEEEEEECCB-TTBCCTTTHH
T ss_pred cCCCeEEEEEECCChHHHHHHHHHHHHHHhCC--CceEEeeHHHhh-------hhhhhCCeEEEEEeec-CCCcCHHHHH
Confidence 34688999999999999999999999998765 456788888753 2477889999999999 9999999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHH
Q 005624 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 260 (687)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L 260 (687)
|+++|.... ...|++++|+|||+||++| ++||.+++.++++|+++||+++.+.+++|++.+.+++|.+|.+.||+.|
T Consensus 89 fl~~L~~~~--~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~~~~d~~~d~e~~~~~w~~~l~~~l 166 (191)
T 1bvy_F 89 FVDWLDQAS--ADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDV 166 (191)
T ss_dssp HHHHHHTCC--SSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc--chhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeeccEEEecCCChHHHHHHHHHHHHHHh
Confidence 999997532 2358999999999999999 6999999999999999999999999999886667777999999999999
Q ss_pred H
Q 005624 261 D 261 (687)
Q Consensus 261 ~ 261 (687)
.
T Consensus 167 ~ 167 (191)
T 1bvy_F 167 A 167 (191)
T ss_dssp H
T ss_pred c
Confidence 6
|
| >1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-26 Score=218.71 Aligned_cols=151 Identities=29% Similarity=0.415 Sum_probs=129.0
Q ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHH
Q 005624 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (687)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~ 181 (687)
..|++++|+|+|+||||+++|+.|++.+.+.+ ..++++++++++. .++.+++.+||++||||.|++|+++..
T Consensus 7 ~~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~ii~g~pt~g~G~~p~~~~~ 78 (167)
T 1ykg_A 7 AEMPGITIISASQTGNARRVAEALRDDLLAAK--LNVKLVNAGDYKF------KQIASEKLLIVVTSTQGEGEPPEEAVA 78 (167)
T ss_dssp -----CEEEEECSSSHHHHHHHHHHHHHHHHT--CCCEEEEGGGCCG------GGGGGCSEEEEEEECBGGGBCCGGGHH
T ss_pred CCCCeEEEEEECCchHHHHHHHHHHHHHHHCC--CceEEeehhhCCH------HHhccCCeEEEEEcccCCCcCChhHHH
Confidence 34678999999999999999999999998765 3467888888764 347788999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHH
Q 005624 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 261 (687)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 261 (687)
|+++|... ....|++++|+|||+||++|++||.+++.++++|+++|++++.+.+.+| .+.++++.+|.+++++.|.
T Consensus 79 f~~~l~~~--~~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~~~d--~~~~~~~~~w~~~l~~~l~ 154 (167)
T 1ykg_A 79 LHKFLFSK--KAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDAD--VEYQAAASEWRARVVDALK 154 (167)
T ss_dssp HHHHHTST--TCCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCEEEC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--cccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeecceecC--CCcHHHHHHHHHHHHHHHH
Confidence 99999752 1235899999999999999999999999999999999999999998887 3568999999999999987
Q ss_pred hhh
Q 005624 262 NLL 264 (687)
Q Consensus 262 ~~~ 264 (687)
...
T Consensus 155 ~~~ 157 (167)
T 1ykg_A 155 SRA 157 (167)
T ss_dssp TCC
T ss_pred hhc
Confidence 654
|
| >2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-26 Score=214.44 Aligned_cols=144 Identities=26% Similarity=0.296 Sum_probs=124.7
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|++++|+|+|+||||+++|+.|++.+.+.+ ..+.++++.+ . .++.+++.+||++||||.|++|+++..|+
T Consensus 1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~--~------~~l~~~d~vi~g~pt~g~g~~p~~~~~f~ 70 (147)
T 2hna_A 1 MADITLISGSTLGGAEYVAEHLAEKLEEAG--FTTETLHGPL--L------EDLPASGIWLVISSTHGAGDIPDNLSPFY 70 (147)
T ss_dssp CCSEEEECCTTSCCCHHHHHHHHHHHHHTT--CCEEEECCTT--S------CSSCSEEEEEEECCTTTTCCTTSSCHHHH
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHCC--CceEEecCCC--H------HHcccCCeEEEEECccCCCCCChhHHHHH
Confidence 568999999999999999999999998765 3456665532 2 24677899999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCC--CcHHhHHHHHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 260 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L 260 (687)
++|.... ..+++++|+|||+||++|++||.+++.++++|+++|++++.+.+.+|... +.++++.+|.+++++.|
T Consensus 71 ~~l~~~~---~~l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 71 EALQEQK---PDLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp HHHHHHC---CCTTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECSSCBCCCCSSCCSSCSCCHHHHHHHHHHH
T ss_pred HHHHhhc---cccCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEeeeeEEEecCCCCCcHHHHHHHHHHHHHHh
Confidence 9997631 24889999999999999999999999999999999999999999988743 56788999999999876
|
| >1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.2e-24 Score=217.53 Aligned_cols=182 Identities=17% Similarity=0.268 Sum_probs=143.4
Q ss_pred CChHHHHHHHcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEee
Q 005624 449 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v~~ 526 (687)
..+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+.+ ..|.+|+||. ++.+|+ .+.|..+.
T Consensus 44 ~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~i~vk~~---------~~G~~s~~l~~~l~~Gd------~v~v~gP~ 107 (250)
T 1tvc_A 44 FEPGQFMDLTIPGTDVSRSYSPANLPNP-EGRLEFLIRVL---------PEGRFSDYLRNDARVGQ------VLSVKGPL 107 (250)
T ss_dssp CCSCCEEEECTTSCSSSEEECCBCCSSS-SCCEEEEECCC---------TTSSSHHHHHHHSSSSS------EEEEEEEE
T ss_pred cCCCcEEEEEeCCCccccccccCCCCCC-CCeEEEEEEEC---------CCCCchHHHHhcCCCCC------EEEEEcCc
Confidence 3568887655565 56899999999863 46788877532 3589999996 777765 46677778
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|+|.++.+...|++|||+|||||||++++++....+ ...+++||||+|+.+ |++|.+||+++.+....+++++++
T Consensus 108 G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 182 (250)
T 1tvc_A 108 GVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWT----APNETRIYFGVNTEP-ELFYIDELKSLERSMRNLTVKACV 182 (250)
T ss_dssp CCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHT----CCSCEEEEEECSSST-TCCCHHHHHHHHHHSSSCEEEECC
T ss_pred cccccCccCCceEEEEEeccCHHHHHHHHHHHHhcC----CCceEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEEe
Confidence 999988765689999999999999999999987643 136899999999997 999999999998766667899999
Q ss_pred ecCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
||+++ .++||++.+.+. +.+. ..+..+|+||| ++|+++|.+.|.+
T Consensus 183 s~~~~~~~g~~g~v~~~l~~~---~~~~-~~~~~vyvCGp-~~m~~~v~~~l~~ 231 (250)
T 1tvc_A 183 WHPSGDWEGEQGSPIDALRED---LESS-DANPDIYLCGP-PGMIDAACELVRS 231 (250)
T ss_dssp SSCSSCCSSSSSSSSHHHHHH---HHHS-SSSSEEEEESS-HHHHHHHHHHHHH
T ss_pred ccCCCCcCCccceehHHHHhh---hhcc-cCCcEEEEeCC-HHHHHHHHHHHHH
Confidence 98532 467898877643 2221 25789999999 8999999988864
|
| >1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-23 Score=215.33 Aligned_cols=180 Identities=16% Similarity=0.211 Sum_probs=132.8
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcc--------cCCC
Q 005624 463 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK--------LPAD 534 (687)
Q Consensus 463 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~--------lp~~ 534 (687)
.+|+|||+|+|. .++.++|+|+++.+.+..+....|.+|+||.++.+|+ .+.|..+.|.|. ++.+
T Consensus 64 ~~R~ySi~s~~~-~~~~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~~~~~~~~~f~l~~~ 136 (275)
T 1umk_A 64 VVRPYTPISSDD-DKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGD------TIEFRGPSGLLVYQGKGKFAIRPD 136 (275)
T ss_dssp EEEEECCSSCTT-CCSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTC------EEEEEEEECSEEEEETTEEEECSS
T ss_pred EEeccccCCccC-CCCeEEEEEEEeccCcccccCCCChhHHHHhcCCCCC------EEEEEcCccceEecCCcccccccc
Confidence 479999999986 3578999887653333223335699999999887765 466666777764 3422
Q ss_pred --------CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEE
Q 005624 535 --------AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVA 605 (687)
Q Consensus 535 --------~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~a 605 (687)
...|+||||+|||||||+++++++.... ...++++||||+|+.+ |++|.+||+++.++.. .++++++
T Consensus 137 ~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~~~---~~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~ 212 (275)
T 1umk_A 137 KKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDP---DDHTVCHLLFANQTEK-DILLRPELEELRNKHSARFKLWYT 212 (275)
T ss_dssp TTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCT---TCCCEEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEEE
T ss_pred ccccccccCCceEEEEecCccHhHHHHHHHHHHhCC---CCCcEEEEEEEcCCHH-HhhHHHHHHHHHHhCcCcEEEEEE
Confidence 3578999999999999999999986531 1236899999999986 9999999999987754 5688999
Q ss_pred EecCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHH-HHHHHHHHH
Q 005624 606 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMAR-DVHRTLHTI 657 (687)
Q Consensus 606 fSr~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~-~V~~~L~~i 657 (687)
+||++. .++||++.+.+. .......++.+|+||| ++|++ +|++.|.+.
T Consensus 213 ~s~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~v~~~L~~~ 265 (275)
T 1umk_A 213 LDRAPEAWDYGQGFVNEEMIRD---HLPPPEEEPLVLMCGP-PPMIQYACLPNLDHV 265 (275)
T ss_dssp ESSCCSSCSSEESSCCHHHHHH---HSCCGGGCCEEEEESC-HHHHHHTTHHHHHHH
T ss_pred EcCCCccccCccCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHHHc
Confidence 998643 356787654321 1111125789999999 89999 888888653
|
| >2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-24 Score=222.51 Aligned_cols=182 Identities=18% Similarity=0.341 Sum_probs=137.6
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEEEEee--CC-C---CccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccCCC
Q 005624 461 RLQPRYYSISSSPRVAPSRIHVTCALVYEK--TP-T---GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPAD 534 (687)
Q Consensus 461 ~l~pR~YSIsSsp~~~~~~i~itv~~v~~~--~~-~---g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp~~ 534 (687)
...+|+|||+|+|.. .+.++|+|+++... +. . .+...|.+|+||.++.+|+ .+.|..+.|+|.++.
T Consensus 83 ~~~~R~ySi~s~~~~-~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd------~v~v~gP~G~f~~~~- 154 (290)
T 2r6h_A 83 EETVRAYSMANYPAE-GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGD------KVMMSGPYGDFHIQD- 154 (290)
T ss_dssp SCEEEEEECCSCTTC-CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTC------EEEEEEEECCCCCCS-
T ss_pred CCcceeeeccCCCCC-CCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCC------EEEEEecccCCcCCC-
Confidence 356799999999863 47888887643110 00 0 1235799999999977765 467777889998864
Q ss_pred CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC---
Q 005624 535 AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP--- 611 (687)
Q Consensus 535 ~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~--- 611 (687)
..+|+||||+|||||||++|+++++.... ..++++||||||+++ |++|.+||+++.+.+..+++++++||+..
T Consensus 155 ~~~~~vliagGtGitP~~s~l~~~~~~~~---~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~ 230 (290)
T 2r6h_A 155 TDAEMLYIGGGAGMAPLRAQILHLFRTLK---TGRKVSYWYGARSKN-EIFYEEDFREIEREFPNFKFHIALSDPQPEDN 230 (290)
T ss_dssp SSCEEEEEEEGGGHHHHHHHHHHHHHTSC---CCSCEEEEEEESSGG-GCCSHHHHHHHHHHCTTEEEEEEESSCCGGGC
T ss_pred CCCeEEEEECccCHHHHHHHHHHHHHhcC---CCCcEEEEEEcCCHH-HHHHHHHHHHHHHhCCCeEEEEEEccCCcccC
Confidence 46899999999999999999999876432 236899999999997 99999999999887777799999998642
Q ss_pred ---CccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 612 ---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 612 ---~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
.++||++.+.+.. +.+.. ..++.+|+||| ++|+++|++.|.+.
T Consensus 231 ~~g~~g~v~~~~~~~~--l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~ 277 (290)
T 2r6h_A 231 WTGYVGFIHQVIYDNY--LKDHDAPEDIEYYMCGP-GPMANAVKGMLENL 277 (290)
T ss_dssp CCSCBSCHHHHHHHHT--TTTCSCGGGEEEEEECC-HHHHHHHHHHHHHH
T ss_pred CCCeeEecCHHHHHhH--HhhccCcCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 3678887764321 11111 24678999999 89999999988653
|
| >1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=213.47 Aligned_cols=179 Identities=17% Similarity=0.203 Sum_probs=138.1
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchh-hcccCCCCCCCCCceeeEEEeeC
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW-MKNSLPMEKSNDCSWAPIFVRQS 527 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~-L~~~~~~~~~~~~~~~~v~v~~~ 527 (687)
..+|||+.+.+|...+|+|||+|+|.. ++.++|+|+++ ..|.+|+| +.++.+|+ .+.|..+.|
T Consensus 30 ~~pGq~v~l~~~~~~~R~ySi~s~~~~-~~~l~l~i~~~---------~~G~~s~~~~~~l~~Gd------~v~v~gP~G 93 (232)
T 1qfj_A 30 FRAGQYLMVVMDERDKRPFSMASTPDE-KGFIELHIGAS---------EINLYAKAVMDRILKDH------QIVVDIPHG 93 (232)
T ss_dssp CCTTCEEEEESSSSCEEEEECCSCTTS-TTCEEEEEC---------------CCHHHHHHHHHHS------EEEEEEEEC
T ss_pred cCCCCEEEEECCCCceeeeecCCCCCC-CCcEEEEEEEc---------cCCchhHHHHHhCCCCC------EEEEeCCcc
Confidence 357898876667778899999999863 46888887643 23666775 66666655 467777789
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
+|.++.+...|++|||+|||||||+++++++...+ ...+++||||+|+.+ |++|.+||+++.+++..++++.++|
T Consensus 94 ~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~s 168 (232)
T 1qfj_A 94 EAWLRDDEERPMILIAGGTGFSYARSILLTALARN----PNRDITIYWGGREEQ-HLYDLCELEALSLKHPGLQVVPVVE 168 (232)
T ss_dssp SCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHC----TTCCEEEEEEESSGG-GCTTHHHHHHHHHHCTTEEEEEEES
T ss_pred ceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcC----CCCcEEEEEeeCCHH-HhhhHHHHHHHHHHCCCeEEEEEEc
Confidence 99988666789999999999999999999987643 136899999999997 9999999999988776778999999
Q ss_pred cCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHH
Q 005624 608 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL 654 (687)
Q Consensus 608 r~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L 654 (687)
|+++ .++||++.+.+.. .+ ..+..+|+||| ++|+++|++.|
T Consensus 169 ~~~~~~~g~~g~v~~~~~~~~---~~--~~~~~vyvCGp-~~m~~~v~~~l 213 (232)
T 1qfj_A 169 QPEAGWRGRTGTVLTAVLQDH---GT--LAEHDIYIAGR-FEMAKIARDLF 213 (232)
T ss_dssp SCCTTCCSEESCHHHHHHHHC---SC--CTTCEEEEESC-HHHHHHHHHHH
T ss_pred CCCCCcCCceeeHHHHHHHhc---CC--ccccEEEEECC-HHHHHHHHHHH
Confidence 8653 3578887765431 11 25689999999 89999998877
|
| >3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.8e-24 Score=199.10 Aligned_cols=142 Identities=23% Similarity=0.295 Sum_probs=123.5
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhcc-CCCeEEEEeeCCCC--CCCCchHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLK-KENIVFFFLATYGD--GEPTDNAA 180 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~-~~~~vi~~~sTyG~--G~~pdna~ 180 (687)
|++++|+|+|+||||+++|+.|++.+.+.+ ..++++|+.+++.+ ++. +++.+||++||||. |++|+++.
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~~~~~------~l~~~~d~ii~g~pty~~~~G~~p~~~~ 72 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAAGG--HEVTLLNAADASAE------NLADGYDAVLFGCSAWGMEDLEMQDDFL 72 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHTTT--CEEEEEETTTBCCT------TTTTTCSEEEEEECEECSSSCEECHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCC--CeEEEEehhhCCHh------HhcccCCEEEEEecccCCCCCCCcHHHH
Confidence 578999999999999999999999998765 46789999988753 467 89999999999998 99999999
Q ss_pred HHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccC--CCCcHHhHHHHHHHHHH
Q 005624 181 RFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWP 258 (687)
Q Consensus 181 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~--~~~~e~~f~~W~~~l~~ 258 (687)
.|+++|... .+++++++|||+||+.|.+||.+++.+++.|+++|++++.+....+. +. ..+.+.+|.++|++
T Consensus 73 ~fl~~l~~~-----~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~-~~~~~~~~~~~l~~ 146 (148)
T 3f6r_A 73 SLFEEFDRI-----GLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAEGLKMEGDASN-DPEAVASFAEDVLK 146 (148)
T ss_dssp HHHTTGGGT-----CCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSCCEEEESSGGG-CHHHHHHHHHHHHH
T ss_pred HHHHHhhcc-----CCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeecceEeecCcch-HHHHHHHHHHHHHh
Confidence 999998752 48999999999999999999999999999999999999988666554 23 66788899888765
Q ss_pred H
Q 005624 259 E 259 (687)
Q Consensus 259 ~ 259 (687)
.
T Consensus 147 ~ 147 (148)
T 3f6r_A 147 Q 147 (148)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-23 Score=213.32 Aligned_cols=184 Identities=17% Similarity=0.260 Sum_probs=140.1
Q ss_pred ChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEee
Q 005624 450 PLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 450 p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~ 526 (687)
.+|||+.+.+| ....|+|||+|.|.. .+.++|+|+.+ ..|.+|+||.++.+|+ .+.|..+.
T Consensus 43 ~pGq~v~l~~~~~g~~~~R~ysi~s~~~~-~~~~~l~vk~~---------~~G~~S~~l~~l~~Gd------~v~v~gP~ 106 (243)
T 2eix_A 43 PIGQHMSVKATVDGKEIYRPYTPVSSDDE-KGYFDLIIKVY---------EKGQMSQYIDHLNPGD------FLQVRGPK 106 (243)
T ss_dssp CTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECC---------TTCHHHHHHHTCCTTC------EEEEEEEE
T ss_pred CCceEEEEEEeeCCCEEEeeeeecCCCCC-CCEEEEEEEEc---------CCCCcchHhhcCCCCC------EEEEECCe
Confidence 56888755444 235799999999863 47888877532 3588999999887765 46677778
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|+|.++.+...+++|||+|||||||+++++++..... ...+++||||+|+.+ |++|.+||+++.+++..+++++++
T Consensus 107 G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~---~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 182 (243)
T 2eix_A 107 GQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPK---EKTIINLIFANVNED-DILLRTELDDMAKKYSNFKVYYVL 182 (243)
T ss_dssp CSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTT---CCCEEEEEEEEEEGG-GCTTHHHHHHHHHHCTTEEEEEEE
T ss_pred EEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCC---CCcEEEEEEEcCCHH-HhhHHHHHHHHHHHCCCeEEEEEe
Confidence 8999987667899999999999999999999865321 236899999999996 999999999998876677899999
Q ss_pred ecCCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 607 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 607 Sr~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
||+.+ .++||++.+.+. +......+..+|+||| ++|+++|.+.|.+.
T Consensus 183 s~~~~~~~g~~g~v~~~~l~~---~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~ 233 (243)
T 2eix_A 183 NNPPAGWTGGVGFVSADMIKQ---HFSPPSSDIKVMMCGP-PMMNKAMQGHLETL 233 (243)
T ss_dssp EECCTTCCSEESSCCHHHHHH---HSCCTTSSEEEEEESS-HHHHHHHHHHHHHH
T ss_pred CCCCccccCcCCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 98532 357887643221 1111124678999999 89999999888643
|
| >1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-23 Score=214.21 Aligned_cols=185 Identities=18% Similarity=0.224 Sum_probs=141.2
Q ss_pred CChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEE-E
Q 005624 449 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF-V 524 (687)
Q Consensus 449 ~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~-v 524 (687)
..+|||+.+.+|. ..+|+|||+|+|.. +.++|+|+.+ ..|.+|+||+++.+|+ .+.|. .
T Consensus 31 ~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~l~~~v~~~---------~~G~~s~~l~~l~~Gd------~v~v~~g 93 (248)
T 1fdr_A 31 FTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVTV---------PDGKLSPRLAALKPGD------EVQVVSE 93 (248)
T ss_dssp CCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEECC---------TTCSSHHHHHTCCTTC------EEEEESS
T ss_pred cCCCCcEEEEccCCCCeeeeeecccCCCCC--CcEEEEEEEe---------CCCchhhHHHhCCCcC------EEEEecC
Confidence 3578887655552 46799999999863 6788876532 3588999999887765 46666 5
Q ss_pred eeCCcccCCCC-CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcC-CCcEE
Q 005624 525 RQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQL 602 (687)
Q Consensus 525 ~~~~F~lp~~~-~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g-~~~~l 602 (687)
+.|.|.++.++ ..|++|||+|||||||+++++++.... ...+++||||+|+.+ |++|.+||+++.++. ..+++
T Consensus 94 P~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~ 168 (248)
T 1fdr_A 94 AAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLD----RFKNLVLVHAARYAA-DLSYLPLMQELEKRYEGKLRI 168 (248)
T ss_dssp CBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCT----TCSEEEEEEEESSGG-GCTTHHHHHHHHHHTTTSEEE
T ss_pred CcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhC----CCCcEEEEEEcCCHH-HhhHHHHHHHHHHhCcCcEEE
Confidence 67889887653 689999999999999999999864322 136899999999996 999999999998764 35688
Q ss_pred EEEEecCCC---Cccccchhhhcch-HHHHhc-c-cCCcEEEEECCchhhHHHHHHHH-HH
Q 005624 603 IVAFSREGP---TKEYVQHKMMEKS-SDIWNM-L-SEGAYLYVCGDAKSMARDVHRTL-HT 656 (687)
Q Consensus 603 ~~afSr~~~---~k~yVq~~l~e~~-~~v~~~-i-~~~~~iYvCG~a~~M~~~V~~~L-~~ 656 (687)
++++||++. .++||++.+.+.. +..... . ..+..+|+||| ++|+++|++.| .+
T Consensus 169 ~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~ 228 (248)
T 1fdr_A 169 QTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGN-PQMVRDTQQLLKET 228 (248)
T ss_dssp EEEESSSCCTTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEEC-HHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCC-HHHHHHHHHHHHHH
Confidence 999999754 3688998876542 222221 2 35789999999 89999999888 54
|
| >4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-23 Score=209.76 Aligned_cols=181 Identities=17% Similarity=0.292 Sum_probs=138.7
Q ss_pred CChHHHHHHHcCCC-----cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeE
Q 005624 449 PPLGVFFAAIVPRL-----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPI 522 (687)
Q Consensus 449 ~p~~~~l~~~~p~l-----~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v 522 (687)
..+|||+.+.+|.. ++|+|||+|+|. .+.++|+|+.+ ..++...|.+|+||+ ++.+|+ .+.|
T Consensus 34 ~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~--~~~~~i~vk~~----~~~~~~~G~~S~~l~~~l~~G~------~v~v 101 (243)
T 4eh1_A 34 YQPGQYIGIEVTPEGSDYREIRQYSLSHASN--GREYRISVKRE----GVGSDNPGLVSHYLHNNVKVGD------SVKL 101 (243)
T ss_dssp CCTTCEEEEEECCSSCSSCEEEEEEBCSCCC--SSCEEEEEECT----TTTSSSCCHHHHHHHHHCCTTC------EEEE
T ss_pred cCCCCEEEEEEecCCCccccceeeEeccCCC--CCeEEEEEEEe----ecCCCCCCeehhHHHhcCCCCC------EEEE
Confidence 35788886655532 469999999985 36688776532 112335699999997 576665 4677
Q ss_pred EEeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEE
Q 005624 523 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 602 (687)
Q Consensus 523 ~v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l 602 (687)
..+.|.|.++ +...|+||||+|||||||+++++++..... .+++|+||+|+.+ |++|.+||+++.+.+ ..++
T Consensus 102 ~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~~~-----~~v~l~~~~r~~~-~~~~~~el~~l~~~~-~~~~ 173 (243)
T 4eh1_A 102 YAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQNK-----SGVTYLYACNSAK-EHTFAQETAQLIAQQ-GWMQ 173 (243)
T ss_dssp EEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHTTC-----CSEEEEEEESSGG-GCTTHHHHHHHHHHH-TCEE
T ss_pred EccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHcCC-----CeEEEEEEeCChh-hhhHHHHHHHHHHhC-CeEE
Confidence 7788999988 567899999999999999999999876431 2399999999997 999999999998877 6689
Q ss_pred EEEEecCCC---CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 603 IVAFSREGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 603 ~~afSr~~~---~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
++++|++.. .+++++..+. .+-..+..||+||| ++|+++|++.|.+.
T Consensus 174 ~~~~s~~~~~~~~~g~~~~~~~-------~~~~~~~~vyvCGp-~~m~~~v~~~l~~~ 223 (243)
T 4eh1_A 174 QVWYRDESADDVLQGEMQLAEL-------ILPIEDGDFYLCGP-IGFMQYVVKQLLAL 223 (243)
T ss_dssp EEEESSCCCTTCEESSCCCTTS-------CCCTTTCEEEEEEC-HHHHHHHHHHHHHH
T ss_pred EEEEccCCCcccccCCccHHHe-------eccCCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 999998654 2455554433 12236789999999 89999999988754
|
| >1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-23 Score=220.57 Aligned_cols=179 Identities=23% Similarity=0.288 Sum_probs=142.9
Q ss_pred CChHHHHHHHcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEee
Q 005624 449 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v~~ 526 (687)
..+|||+.+.+|. ..+|+|||+|+|. .+.++|+|+.+ ..|.+|+||. ++.+|+ .+.|..+.
T Consensus 139 ~~pGQ~v~l~~~~~~~~R~ySi~s~~~--~~~l~~~vk~~---------~~G~~S~~L~~~l~~Gd------~v~v~gP~ 201 (338)
T 1krh_A 139 FLAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVRNV---------PQGKMSEYLSVQAKAGD------KMSFTGPF 201 (338)
T ss_dssp CCTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEECC---------TTCHHHHHHHTTCCTTC------EEEEEEEE
T ss_pred cCCCCeEEEEcCCCCccccccccCCCC--CCeEEEEEEEc---------CCCCchhhHhhccCCCC------EEEEECCc
Confidence 3578888666665 5689999999986 57888887532 3588999995 676655 46777778
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|+|.++.+ .+|++|||+|||||||+++++++...+ ...+++||||+|+++ |++|.+||+++.+....+++++++
T Consensus 202 G~f~~~~~-~~~~vliagGtGiaP~~s~l~~l~~~~----~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~ 275 (338)
T 1krh_A 202 GSFYLRDV-KRPVLMLAGGTGIAPFLSMLQVLEQKG----SEHPVRLVFGVTQDC-DLVALEQLDALQQKLPWFEYRTVV 275 (338)
T ss_dssp CSCSCCCC-SSCEEEEEEGGGHHHHHHHHHHHHHHC----CSSCEEEEEEESSGG-GCCCHHHHHHHHHHCTTEEEEEEE
T ss_pred cceEeCCC-CceEEEEEccccHhHHHHHHHHHHHcC----CCCeEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEEE
Confidence 99998765 489999999999999999999987643 136899999999996 999999999999877777899999
Q ss_pred ecCCC---CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~---~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
||++. .++||++.+.+. .+. ..+..+|+||| ++|+++|++.|.+
T Consensus 276 s~~~~~~~~~g~v~~~l~~~--~~~---~~~~~vy~CGp-~~m~~~v~~~l~~ 322 (338)
T 1krh_A 276 AHAESQHERKGYVTGHIEYD--WLN---GGEVDVYLCGP-VPMVEAVRSWLDT 322 (338)
T ss_dssp TTCCSSSSEESCSGGGCCGG--GGG---GGCSEEEEEEE-HHHHHHHHHHHHH
T ss_pred ecCCCCCCccCccCHHHHHh--hcc---cCCcEEEEECC-HHHHHHHHHHHHH
Confidence 98653 367899877632 111 24678999999 8999999988865
|
| >1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=221.90 Aligned_cols=179 Identities=15% Similarity=0.235 Sum_probs=138.1
Q ss_pred CChHHHHHHHcCC-----CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeE
Q 005624 449 PPLGVFFAAIVPR-----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPI 522 (687)
Q Consensus 449 ~p~~~~l~~~~p~-----l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v 522 (687)
..+|||+.+.+|. ..+|+|||+|+|. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.|
T Consensus 183 ~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v 245 (396)
T 1gvh_A 183 YRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVKRE---------EGGQVSNWLHNHANVGD------VVKL 245 (396)
T ss_dssp CCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEECC---------TTCHHHHHHHHTCCTTC------EEEE
T ss_pred CCCCCeEEEEecCCCCccceeecceeccCCC--CCeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEE
Confidence 3578888655552 3579999999986 46788877532 25999999997 66655 4677
Q ss_pred EEeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEE
Q 005624 523 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 602 (687)
Q Consensus 523 ~v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l 602 (687)
..+.|.|.++.+..+|+||||+|||||||+++++++...+. .++++|+||+|+++ |++|.+||+++.+++...++
T Consensus 246 ~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 320 (396)
T 1gvh_A 246 VAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAGH----TAQVNWFHAAENGD-VHAFADEVKELGQSLPRFTA 320 (396)
T ss_dssp EEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHTC----CSCEEEEEEESCTT-TCCSHHHHHHHHHTSSSEEE
T ss_pred EcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcCC----CCcEEEEEEeCCHH-HhhhHHHHHHHHHHCCCeEE
Confidence 78888999986667899999999999999999999876531 36899999999997 99999999999988777789
Q ss_pred EEEEecCCCC---------ccccchhhhcchHHHHhc-ccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 603 IVAFSREGPT---------KEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 603 ~~afSr~~~~---------k~yVq~~l~e~~~~v~~~-i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
++++|+++.. +++++... +.+. ...++.+|+||| ++|+++|++.|.+
T Consensus 321 ~~~~s~~~~~~~~~~~~~~~G~~~~~~------l~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~ 377 (396)
T 1gvh_A 321 HTWYRQPSEADRAKGQFDSEGLMDLSK------LEGAFSDPTMQFYLCGP-VGFMQFTAKQLVD 377 (396)
T ss_dssp EEEESSCCHHHHHHTCCSEESSCCGGG------SSSCCCCTTCEEEEESC-HHHHHHHHHHHHH
T ss_pred EEEECCCCccccccCccCccCcCCHHH------HhhccCCCCCEEEEeCC-HHHHHHHHHHHHH
Confidence 9999986531 23333321 1111 113789999999 8999999988864
|
| >4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-23 Score=218.26 Aligned_cols=203 Identities=17% Similarity=0.190 Sum_probs=146.5
Q ss_pred CChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEE-E
Q 005624 449 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF-V 524 (687)
Q Consensus 449 ~p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~-v 524 (687)
..+|||+.+.+| ....|+|||+|+|. .+.++++++.+ ..|.+|+||+++.+|+ .+.|. .
T Consensus 47 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~~~~~v~~~---------~~G~~s~~l~~l~~Gd------~v~v~~g 109 (271)
T 4fk8_A 47 FNNGEFTMVGLEVDGKPLTRAYSIVSPNY--EEHLEFFSIKV---------QNGPLTSRLQHLKVGD------PVLIGKK 109 (271)
T ss_dssp CCTTCEEEEEEEETTEEEEEEEECCSCTT--SSSEEEEEECC---------TTCTTHHHHTTCCTTC------EEEEESC
T ss_pred cCCCCEEEEEccCCCceeeeeEeccCCCC--CCcEEEEEEEE---------CCCchhhHHhcCCCCC------EEEEecC
Confidence 357888765555 23579999999985 35677766422 3589999999887765 46777 6
Q ss_pred eeCCcccCC-CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-----
Q 005624 525 RQSNFKLPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA----- 598 (687)
Q Consensus 525 ~~~~F~lp~-~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~----- 598 (687)
+.|+|.++. +...|++|||+|||||||+++++++...... .+++|+||+|+.+ |++|.+||+++.+++.
T Consensus 110 P~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~----~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~ 184 (271)
T 4fk8_A 110 PTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYERF----DKVVLTHTCRLKG-ELAYMDYIKHDLPGHEYLGDV 184 (271)
T ss_dssp CBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHHC----SEEEEEECCCSHH-HHHHHHHHHTCCTTCTTHHHH
T ss_pred CCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCCC----CCEEEEEecCCHH-HHhHHHHHHHHHHhCcccccc
Confidence 778898875 3578999999999999999999998765432 6899999999996 9999999999877654
Q ss_pred ---CcEEEEEEecCCC-CccccchhhhcchHHHHh-----cccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHH
Q 005624 599 ---LSQLIVAFSREGP-TKEYVQHKMMEKSSDIWN-----MLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 669 (687)
Q Consensus 599 ---~~~l~~afSr~~~-~k~yVq~~l~e~~~~v~~-----~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a 669 (687)
.++++.++||+.. .++||++.+.+.. .+.. ...+++.+|+||| ++|+++|++.|.+......
T Consensus 185 ~~~~~~~~~~~s~~~~~~~G~v~~~~~~~~-l~~~~~~~~~~~~~~~v~vCGp-~~m~~~v~~~l~~~gv~~~------- 255 (271)
T 4fk8_A 185 IREKLVYYPTVTREEFENEGRITDLIASGK-LFTDLDMPPFSPEQDRVMLCGS-TAMLKDTTELLKKAGLVEG------- 255 (271)
T ss_dssp HHHHEEEEECC-------CCHHHHHHHHSH-HHHHTTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHTTCCBC-------
T ss_pred ccceEEEEEEecCCccccccccChHHhcch-hhhhcccccCCCCCCEEEEECC-HHHHHHHHHHHHHcCCchh-------
Confidence 3578888998753 5788888775531 1111 1235789999999 8999999998875433222
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 005624 670 ESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 670 ~~~~~~l~~~gRy~~Dvw 687 (687)
++...|+|..|.|
T Consensus 256 -----~i~~~~~~~~E~y 268 (271)
T 4fk8_A 256 -----KNSAPGHYVIERA 268 (271)
T ss_dssp -----BTTBCBSEEEEES
T ss_pred -----hcCCCCcEEEEEe
Confidence 2234678887765
|
| >2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-22 Score=211.51 Aligned_cols=185 Identities=17% Similarity=0.227 Sum_probs=139.9
Q ss_pred CChHHHHHHHcC----CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEE-
Q 005624 449 PPLGVFFAAIVP----RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 523 (687)
Q Consensus 449 ~p~~~~l~~~~p----~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~- 523 (687)
..+|||+.+.+| ...+|+|||+|+|.. +.++|+++.+ ..|.+|+||.++.+|+ .+.|.
T Consensus 44 ~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~--~~~~l~v~~~---------~~G~~s~~l~~l~~Gd------~v~v~~ 106 (272)
T 2bgi_A 44 FRSGEFVMIGLLDDNGKPIMRAYSIASPAWD--EELEFYSIKV---------PDGPLTSRLQHIKVGE------QIILRP 106 (272)
T ss_dssp CCTTCEEEEEEECTTSCEEEEEEECCSCTTC--SEEEEEEECC---------TTCTTHHHHTTCCTTC------EEEEEE
T ss_pred cCCCCEEEEEeccCCCCeeeeeeeeccCCCC--CeEEEEEEEc---------cCCCchhHHHhCCCCC------EEEEee
Confidence 346888865555 235799999999863 6788776532 3589999999887765 46676
Q ss_pred EeeCCcccCCCC-CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHH-HHHH-----c
Q 005624 524 VRQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELN-NFVQ-----S 596 (687)
Q Consensus 524 v~~~~F~lp~~~-~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~-~~~~-----~ 596 (687)
.+.|.|.++.+. ..|++|||+|||||||+++++++.... ...+++||||+|+.+ |++|.+||+ ++.+ +
T Consensus 107 gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~~ 181 (272)
T 2bgi_A 107 KPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYE----KFDEVIMMHACRTVA-ELEYGRQLVEALQEDPLIGE 181 (272)
T ss_dssp EEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGT----SCSEEEEEEEESSSG-GGHHHHHHHHHHHHCTTTTT
T ss_pred CCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcC----CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhcchhhc
Confidence 577889887553 689999999999999999999865432 126899999999997 999999999 8887 3
Q ss_pred --CCCcEEEEEEecCCC-Cccccchhhhcch-HHHHhc--c-cCCcEEEEECCchhhHHHHHHHHHH
Q 005624 597 --GALSQLIVAFSREGP-TKEYVQHKMMEKS-SDIWNM--L-SEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 597 --g~~~~l~~afSr~~~-~k~yVq~~l~e~~-~~v~~~--i-~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
...++++.++||+.. .++||++.+.+.. +....+ + ..++.+|+||| ++|+++|.+.|.+
T Consensus 182 ~~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~ 247 (272)
T 2bgi_A 182 LVEGKLKYYPTTTREEFHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGS-LAFNVDVMKVLES 247 (272)
T ss_dssp TSTTTEEEEEEESSSCCSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHT
T ss_pred ccCCcEEEEEEecCCccccCceechHHHhhhHhhhcccccCCCCCcEEEEECC-HHHHHHHHHHHHH
Confidence 245688899998743 4789998886542 111111 2 25789999999 8999999988764
|
| >4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-22 Score=218.46 Aligned_cols=182 Identities=14% Similarity=0.277 Sum_probs=140.1
Q ss_pred ChHHHHHHHc--C--C---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceee
Q 005624 450 PLGVFFAAIV--P--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAP 521 (687)
Q Consensus 450 p~~~~l~~~~--p--~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~ 521 (687)
.+|||+.+.+ | . ..+|+|||+|+|. ++.++|+|+... ..+....|.+|+||+ ++.+|+ .+.
T Consensus 185 ~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~--~~~~~i~Vk~~~---~~~~~~~G~~S~~L~~~l~~Gd------~v~ 253 (399)
T 4g1v_A 185 TPGQYITVNTHPIRQENQYDALRHYSLCSAST--KNGLRFAVKMEA---ARENFPAGLVSEYLHKDAKVGD------EIK 253 (399)
T ss_dssp CTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC--TTCEEEEEECCC---CBTTBCCCHHHHHHHHTCCTTC------EEE
T ss_pred CCCCEEEEEEeCCCCCCccceeeeecccCCCC--CCeEEEEEEecc---CCCCCCCCEehhHHHhCCCCCC------EEE
Confidence 4688875443 3 2 3579999999986 367887765321 111135799999996 676655 477
Q ss_pred EEEeeCCcccCCC----CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcC
Q 005624 522 IFVRQSNFKLPAD----AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 597 (687)
Q Consensus 522 v~v~~~~F~lp~~----~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g 597 (687)
|..+.|.|.++.+ ..+|+||||+|||||||++|++++..... .++++||||+|+.+ |++|.+||+++.+++
T Consensus 254 v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~ 328 (399)
T 4g1v_A 254 LSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNP----NRPIYWIQSSYDEK-TQAFKKHVDELLAEC 328 (399)
T ss_dssp EEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCT----TSCEEEEEEESSST-TSTTHHHHHHHHTTC
T ss_pred EEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcCC----CCCEEEEEecCCHH-HhhhHHHHHHHHHhC
Confidence 8888899999876 57899999999999999999999877542 26899999999986 999999999999888
Q ss_pred CCcEEEEEEecCCCCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 598 ALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 598 ~~~~l~~afSr~~~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
...++++++|++. ++++. +.+.+.+..++.+|+||| ++|+++|++.|.+.
T Consensus 329 ~~~~~~~~~s~~~---g~~~~------~~l~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~ 378 (399)
T 4g1v_A 329 ANVDKIIVHTDTE---PLINA------AFLKEKSPAHADVYTCGS-LAFMQAMIGHLKEL 378 (399)
T ss_dssp SSEEEEEEETTTS---CCCCH------HHHHHHSCSSCEEEEEEC-HHHHHHHHHHHHHT
T ss_pred CCcEEEEEEeCCC---CcccH------HHHHhhCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 7778999999854 44542 223334445899999999 89999999988653
|
| >1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-22 Score=221.59 Aligned_cols=187 Identities=21% Similarity=0.300 Sum_probs=138.4
Q ss_pred CChHHHHHHHcC--C---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeE
Q 005624 449 PPLGVFFAAIVP--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPI 522 (687)
Q Consensus 449 ~p~~~~l~~~~p--~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v 522 (687)
..+|||+.+.+| . ..+|+|||+|+|. .+.++|+|+.+ +.+..+.|.+|+||++ +.+|+ .+.|
T Consensus 185 ~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~----~~~~~~~G~~S~~L~~~l~~Gd------~v~v 252 (403)
T 1cqx_A 185 FEPGQYTSVAIDVPALGLQQIRQYSLSDMPN--GRTYRISVKRE----GGGPQPPGYVSNLLHDHVNVGD------QVKL 252 (403)
T ss_dssp CCTTCEEEEEEEETTTTEEEEEEEECCSCCC--SSCEEEEEECC----CBTTBCCCHHHHHHHHHCCTTC------EEEE
T ss_pred CCCCCEEEEEEecCCCCcceeecceecCCCC--CCeEEEEEEEC----CCCCCCCCeehHHHhhCCCCCC------EEEE
Confidence 357888765444 2 3579999999986 46788877643 1122346999999995 77765 4566
Q ss_pred EEeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEE
Q 005624 523 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 602 (687)
Q Consensus 523 ~v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l 602 (687)
..+.|.|.++.+..+|+||||+|||||||+++++++.. . ..++++||||+|+.+ |++|.+||+++.+++..+++
T Consensus 253 ~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 326 (403)
T 1cqx_A 253 AAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-A----PPRQVVFVHGARNSA-VHAMRDRLREAAKTYENLDL 326 (403)
T ss_dssp CCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-S----SCCCEEEEEEESCSS-SCHHHHHHHHHHHHCTTEEE
T ss_pred ecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-C----CCCcEEEEEEeCChh-hCcHHHHHHHHHHhCCCcEE
Confidence 66778999976667899999999999999999999864 1 236899999999997 99999999999988777789
Q ss_pred EEEEecCCCCc----cccch-hhhcchHHHHhc-ccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 603 IVAFSREGPTK----EYVQH-KMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 603 ~~afSr~~~~k----~yVq~-~l~e~~~~v~~~-i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
++++|+++... .|.++ ++.. +.+.+. ...++.+|+||| ++|+++|++.|.+
T Consensus 327 ~~~~s~~~~~~~~~~~~~~~G~i~~--~~l~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~ 383 (403)
T 1cqx_A 327 FVFYDQPLPEDVQGRDYDYPGLVDV--KQIEKSILLPDADYYICGP-IPFMRMQHDALKN 383 (403)
T ss_dssp EEEESSCCTTCCBTTTBSEESSCCG--GGSHHHHCCTTCEEEEESS-HHHHHHHHHHHHH
T ss_pred EEEECCCCcccccccccCcCCCcCH--HHHhhccCCCCCEEEEeCC-HHHHHHHHHHHHH
Confidence 99999865422 23332 2221 112221 113789999999 8999999988864
|
| >2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-22 Score=210.40 Aligned_cols=192 Identities=14% Similarity=0.231 Sum_probs=136.4
Q ss_pred CChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCcc-ccCccchhhcccCCCCCCCCCceeeEEE
Q 005624 449 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRV-HKGLCSTWMKNSLPMEKSNDCSWAPIFV 524 (687)
Q Consensus 449 ~p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~-~~G~~S~~L~~~~~~~~~~~~~~~~v~v 524 (687)
..+|||+.+.+| ...+|+|||+|+|.. ++.++|+|+++.. +..++. ..|.+|+||.++.+|+ .+.|..
T Consensus 43 ~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~l~vk~~~~-~~~~~~~~~G~~s~~l~~l~~Gd------~v~v~g 114 (270)
T 2cnd_A 43 LPIGKHIFVCATIEGKLCMRAYTPTSMVDE-IGHFDLLVKVYFK-NEHPKFPNGGLMTQYLDSLPVGS------YIDVKG 114 (270)
T ss_dssp CCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECCCS-SCBTTBTTCCHHHHHHHHCCTTC------EEEEEE
T ss_pred CCCCCEEEEEeeeCCcEEEEeeccCCCccC-CCEEEEEEEEecc-CcccccCCCCchhhHHhcCCCCC------EEEEEC
Confidence 356887754333 246799999999863 4789988865421 111121 3599999998887765 466666
Q ss_pred eeCC--------cccCC--CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHH
Q 005624 525 RQSN--------FKLPA--DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFV 594 (687)
Q Consensus 525 ~~~~--------F~lp~--~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~ 594 (687)
+.|. |.++. +...|+||||+|||||||+++++++..... ...++++||||+|+++ |++|.+||+++.
T Consensus 115 P~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~--~~~~~v~l~~~~r~~~-d~~~~~el~~l~ 191 (270)
T 2cnd_A 115 PLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQP--EDHTEMHLVYANRTED-DILLRDELDRWA 191 (270)
T ss_dssp EECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTT--TCCCEEEEEEEESCGG-GCTTHHHHHHHH
T ss_pred CcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCC--CCCcEEEEEEEcCCHH-HcchHHHHHHHH
Confidence 6665 67764 246899999999999999999999876421 1236899999999997 999999999998
Q ss_pred HcCC-CcEEEEEEecC---CC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHH-HHHHHH
Q 005624 595 QSGA-LSQLIVAFSRE---GP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLH 655 (687)
Q Consensus 595 ~~g~-~~~l~~afSr~---~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~-V~~~L~ 655 (687)
++.. .+++++++|++ +. .++||++.+.+. .......++.+|+||| ++|+++ +++.|.
T Consensus 192 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~~~~~L~ 257 (270)
T 2cnd_A 192 AEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLRE---HVPEGGDDTLALACGP-PPMIQFAISPNLE 257 (270)
T ss_dssp HHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHH---HSCCCSSSEEEEEECC-HHHHHTTTHHHHH
T ss_pred HHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHH---hcCCCcCCEEEEEECC-HHHHHHHHHHHHH
Confidence 7654 45788899883 11 357888764322 1111124578999999 899986 466665
|
| >2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-22 Score=209.81 Aligned_cols=185 Identities=16% Similarity=0.179 Sum_probs=137.4
Q ss_pred CChHHHHHHHcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEE-E
Q 005624 449 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF-V 524 (687)
Q Consensus 449 ~p~~~~l~~~~p---~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~-v 524 (687)
..+|||+.+.+| ....|+|||+|+|.. +.++++++.+ ..|.+|+||.++.+|+ .+.|. .
T Consensus 31 ~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~~~~~i~~~---------~~G~~s~~l~~l~~Gd------~v~v~~g 93 (257)
T 2qdx_A 31 FKTGQFVMIGLEVDGRPLMRAYSIASPNYE--EHLEFFSIKV---------PDGPLTSRLQHLKEGD------ELMVSRK 93 (257)
T ss_dssp CCTTCEEEEEEEETTEEEEEEEECCSCTTS--SEEEEEEECC---------TTCTTHHHHTTCCTTC------EEEECSC
T ss_pred cCCCCEEEEEecCCCCceeeeeEeecCCCC--CeEEEEEEEe---------CCCcchhHHHhCCCCC------EEEEecC
Confidence 356888865544 235799999999863 6788776532 3589999999887765 35555 4
Q ss_pred eeCCcccCCCC-CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHH-HHHH-----c-
Q 005624 525 RQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELN-NFVQ-----S- 596 (687)
Q Consensus 525 ~~~~F~lp~~~-~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~-~~~~-----~- 596 (687)
+.|.|.++..+ ..|++|||+|||||||+++++++...+. ..+++|+||+|+.+ |++|.+||+ ++.+ +
T Consensus 94 p~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~~~ 168 (257)
T 2qdx_A 94 PTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYER----YEKVILVHGVRWVS-ELAYADFITKVLPEHEYFGDQ 168 (257)
T ss_dssp CBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHH----CSEEEEEEEESSGG-GCTTHHHHHTTGGGCTTTHHH
T ss_pred CCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCC----CCeEEEEEEcCCHH-HhHhHHHHHHHHHhchhhhcc
Confidence 56788887543 6899999999999999999998765432 26899999999996 999999999 7765 2
Q ss_pred -CCCcEEEEEEecCCC-Cccccchhhhcch-HHHHhc--c-cCCcEEEEECCchhhHHHHHHHHHH
Q 005624 597 -GALSQLIVAFSREGP-TKEYVQHKMMEKS-SDIWNM--L-SEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 597 -g~~~~l~~afSr~~~-~k~yVq~~l~e~~-~~v~~~--i-~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
...+++++++||+.. .++||++.+.+.. .+...+ + ..++.+|+||| ++|+++|.+.|.+
T Consensus 169 ~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~ 233 (257)
T 2qdx_A 169 VKEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGS-PSMLEETSAVLDS 233 (257)
T ss_dssp HHHHEEEEEEESSSCCSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHH
T ss_pred CCCcEEEEEEecCCCcccCceechhhhhhhHHHhcccccCCcCCCEEEEECC-HHHHHHHHHHHHH
Confidence 134478889998743 4789998876542 111111 2 25789999999 8999999988864
|
| >1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-22 Score=207.64 Aligned_cols=170 Identities=22% Similarity=0.254 Sum_probs=130.8
Q ss_pred ChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEee
Q 005624 450 PLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 450 p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~ 526 (687)
.+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.++.+|+ .+.|..+.
T Consensus 35 ~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~---------~~G~~S~~l~~l~~Gd------~v~v~gP~ 98 (262)
T 1ep3_B 35 LPGQFLHLAVPNGAMLLRRPISISSWDKR-AKTCTILYRIG---------DETTGTYKLSKLESGA------KVDVMGPL 98 (262)
T ss_dssp STTCEEEECCSCTTCCSCEEEECCEEETT-TTEEEEEEECC---------CTTSHHHHHHTCCTTC------EEEEEEEE
T ss_pred CCCceEEEEcCCCCceeeEEEEeeeecCC-CCEEEEEEEEe---------cCCchHHHHhcCCCCC------EEEEEccc
Confidence 467887655553 67899999998863 47888877532 2588999999887765 46777777
Q ss_pred CC-cccCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEE
Q 005624 527 SN-FKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 604 (687)
Q Consensus 527 ~~-F~lp~~-~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~ 604 (687)
|+ |.++.+ ...|++|||+|||||||+++++++...+ .+++||||+|+++ |++|.+||+++... ++++
T Consensus 99 G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~------~~v~l~~~~r~~~-~~~~~~el~~l~~~----~~~~ 167 (262)
T 1ep3_B 99 GNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG------CQMTILLGFASEN-VKILENEFSNLKNV----TLKI 167 (262)
T ss_dssp SBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT------CEEEEEEEESSGG-GCCCHHHHHTSTTE----EEEE
T ss_pred CCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC------CeEEEEEEcCCHH-HhhhHHHHhhhccC----cEEE
Confidence 77 998865 4689999999999999999999987642 5799999999997 99999999886532 4444
Q ss_pred EEecCCC--CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 605 AFSREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 605 afSr~~~--~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+ ++++. .++||++.+.+. +.+++.+|+||| ++|+++|++ |.+
T Consensus 168 ~-~~~~~~~~~g~v~~~l~~~-------~~~~~~vyvCGp-~~m~~~v~~-l~~ 211 (262)
T 1ep3_B 168 A-TDDGSYGTKGHVGMLMNEI-------DFEVDALYTCGA-PAMLKAVAK-KYD 211 (262)
T ss_dssp E-ETTCSSSEESCHHHHHHHC-------CSCCSEEEEESC-HHHHHHHHH-HTT
T ss_pred E-ECCCCCcceeehHHHHHhh-------ccCCCEEEEECC-HHHHHHHHH-HHh
Confidence 4 44432 467888865442 344789999999 899999988 753
|
| >1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-21 Score=183.60 Aligned_cols=141 Identities=25% Similarity=0.285 Sum_probs=121.5
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccC-CCeEEEEeeCCCCCC--CCchHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKK-ENIVFFFLATYGDGE--PTDNAAR 181 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~-~~~vi~~~sTyG~G~--~pdna~~ 181 (687)
|+++|+|+|+||||+.+|+.|++.+.+.+ ..++++++.+++.+ ++.+ ++.+||++||||.|. +|++++.
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g--~~v~~~~~~~~~~~------~l~~~~d~ii~~~p~y~~g~~~~p~~~~~ 72 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAG--YEVDSRDAASVEAG------GLFEGFDLVLLGCSTWGDDSIELQDDFIP 72 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHT--CEEEEEEGGGCCST------TTTTTCSEEEEEECEECSSSCEECTTTHH
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcC--CeeEEEehhhCCHH------HhcCcCCEEEEEeCCCCCCCcCCChhHHH
Confidence 57999999999999999999999998765 45788898887643 4677 999999999999999 9999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCC-cHHhHHHHHHHHHH
Q 005624 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC-IEDDFSAWRELVWP 258 (687)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~-~e~~f~~W~~~l~~ 258 (687)
|++++... .+++++++|||+||+.|.+||.+.+.+++.|+.+|++.+.+....|.... ..+.+.+|.++|++
T Consensus 73 fl~~l~~~-----~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 145 (147)
T 1f4p_A 73 LFDSLEET-----GAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRG 145 (147)
T ss_dssp HHHTGGGS-----CCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEESCGGGGHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----ccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhcccccccCchhHHHHHHHHHHHHHh
Confidence 99999742 48899999999999999889999999999999999999887666554322 56789999988764
|
| >2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.3e-22 Score=192.39 Aligned_cols=146 Identities=22% Similarity=0.393 Sum_probs=121.9
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCC-------
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT------- 176 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p------- 176 (687)
|++++|+|+|+||||+.+|+.|++.+... ..++++++++++. .++.+++++||++||||.|++|
T Consensus 1 M~kilIiY~S~tGnT~~iA~~ia~~l~~~---~~v~~~~~~~~~~------~~l~~~d~ii~g~pty~~G~~pg~~~~~~ 71 (182)
T 2wc1_A 1 MAKIGLFFGSDTGTTRKIAKQIKDMFDDE---VMAKPLNVNRADV------ADFMAYDFLILGTPTLGDGQLPGLSANAA 71 (182)
T ss_dssp CCSEEEEECCSSSHHHHHHHHHHTTSCTT---TBCCCEEGGGCCH------HHHHHCSEEEEEEECBTTTBCSSGGGTCS
T ss_pred CcEEEEEEECCCchHHHHHHHHHHHhccc---CceEEEEcccCCH------HHHhhCCeEEEEEeeCCCCCCCccccccc
Confidence 57899999999999999999999988643 2356777777653 3577899999999999999999
Q ss_pred -chHHHHHHHHHhhcCCCCCcCCceEEEEeccCCc-h-HHHHHHHHHHHHHHHHcCCcccccc-----------------
Q 005624 177 -DNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV----------------- 236 (687)
Q Consensus 177 -dna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~ak~ld~~L~~lGa~~l~~~----------------- 236 (687)
++++.|+++|.. ..|++++++|||+||+. | ++||.+++.+++.|.++|++.+.+.
T Consensus 72 ~~~~~~f~~~l~~-----~~l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~~~~~~~~~ 146 (182)
T 2wc1_A 72 SESWEEFLPRIAD-----QDFSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDRGANVVGRWPAKGYGFEDSLAVVEGE 146 (182)
T ss_dssp SCCHHHHGGGGTT-----CCCTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTTTCEEECCEECTTSCCSCCTTEETTE
T ss_pred hhHHHHHHHHhhh-----ccCCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHCCCEEEEeecCCCcCcccchhhhcCc
Confidence 999999988864 25889999999999998 8 5899999999999999999988763
Q ss_pred --ccccC-C-C--CcHHhHHHHHHHHHHHHHhh
Q 005624 237 --GLGDD-D-Q--CIEDDFSAWRELVWPELDNL 263 (687)
Q Consensus 237 --g~gD~-~-~--~~e~~f~~W~~~l~~~L~~~ 263 (687)
|++.+ + + ..+++++.|.++||++|...
T Consensus 147 ~~gl~~d~~~~~~~~~~~~~~w~~~l~~~l~~~ 179 (182)
T 2wc1_A 147 FLGLALDQDNQAALTPERLKGWLSLIAADFGLV 179 (182)
T ss_dssp ESSEEECTTTCGGGHHHHHHHHHHHTHHHHTCC
T ss_pred eeeeeccCCCCccccHHHHHHHHHHHHHHHhcc
Confidence 65433 2 2 25888999999999988654
|
| >1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-21 Score=188.74 Aligned_cols=143 Identities=22% Similarity=0.380 Sum_probs=118.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCC--------
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-------- 176 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p-------- 176 (687)
++++|+|+|+||||+.+|+.|++.+.. + ..++++++++.+. .++..++.+||++||||.|++|
T Consensus 1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~-~--~~v~~~~~~~~~~------~~l~~~d~iilg~pt~~~G~~pg~~~~~~~ 71 (179)
T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKRFDD-E--TMSDALNVNRVSA------EDFAQYQFLILGTPTLGEGELPGLSSDAEN 71 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCT-T--TBCCCEEGGGCCH------HHHHTCSEEEEEEECBTTTBCSSGGGTCSS
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCC-C--CceEEEEhhhCCH------HHHhcCCEEEEEeccCCCCcCCcccccccc
Confidence 479999999999999999999998854 2 3356778777653 3577899999999999999999
Q ss_pred chHHHHHHHHHhhcCCCCCcCCceEEEEeccCCc-h-HHHHHHHHHHHHHHHHcCCcccccc------------------
Q 005624 177 DNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV------------------ 236 (687)
Q Consensus 177 dna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~ak~ld~~L~~lGa~~l~~~------------------ 236 (687)
+++..|+++|... .|++++++|||+||+. | ++||.+++.+++.|.++|++.+.+.
T Consensus 72 ~~~~~fl~~l~~~-----~l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~f 146 (179)
T 1yob_A 72 ESWEEFLPKIEGL-----DFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKF 146 (179)
T ss_dssp CCHHHHHHHHTTC-----CCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSB
T ss_pred hHHHHHHHHhhhc-----ccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeeccCCCCcccchhhhcCce
Confidence 9999999999642 5889999999999998 8 5799999999999999999988663
Q ss_pred -cc-ccCC---CCcHHhHHHHHHHHHHHHH
Q 005624 237 -GL-GDDD---QCIEDDFSAWRELVWPELD 261 (687)
Q Consensus 237 -g~-gD~~---~~~e~~f~~W~~~l~~~L~ 261 (687)
|+ .|.+ ...++++++|.+++++.|.
T Consensus 147 ~gl~~d~~~~~~~~~~~i~~w~~~l~~~~~ 176 (179)
T 1yob_A 147 VGLALDLDNQSGKTDERVAAWLAQIAPEFG 176 (179)
T ss_dssp SSEEECTTTCGGGHHHHHHHHHHHHGGGGT
T ss_pred eccccCCCCCCcccHHHHHHHHHHHHHHHh
Confidence 44 2322 2468899999999987664
|
| >2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-20 Score=182.58 Aligned_cols=140 Identities=27% Similarity=0.429 Sum_probs=116.5
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCC-CCcchhHHHhccCCCeEEEEeeCCCCCCC----CchHH
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIVFFFLATYGDGEP----TDNAA 180 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-~~~~~~~~~~l~~~~~vi~~~sTyG~G~~----pdna~ 180 (687)
+++|+|+|+||||+.+|+.|++.+... .+++++++++ +. .++.+++.+||++||||+|++ |+++.
T Consensus 1 ki~I~Y~S~tGnT~~vA~~ia~~l~~~----~~~~~~~~~~~~~------~~l~~~d~ii~g~pt~~~G~~~~~~p~~~~ 70 (173)
T 2fcr_A 1 KIGIFFSTSTGNTTEVADFIGKTLGAK----ADAPIDVDDVTDP------QALKDYDLLFLGAPTWNTGADTERSGTSWD 70 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGGG----BCCCEEGGGCSCG------GGGGGCSEEEEEEECCSTTCSSCCSCSTHH
T ss_pred CEEEEEECCCchHHHHHHHHHHHhccC----CcEEEehhhcCCh------hHHccCCEEEEEEeecCCCCcCccCcHHHH
Confidence 489999999999999999999999764 3467778776 43 357789999999999999999 99999
Q ss_pred HHH-HHHHhhcCCCCCcCCceEEEEeccCCc-h-HHHHHHHHHHHHHHHHcCCcccccc-------------------cc
Q 005624 181 RFY-KWFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV-------------------GL 238 (687)
Q Consensus 181 ~F~-~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~ak~ld~~L~~lGa~~l~~~-------------------g~ 238 (687)
.|+ ++|... .|++++++|||+||+. | ++||.+++.+++.|+++|++.+.+. |+
T Consensus 71 ~fl~~~l~~~-----~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~~~~l 145 (173)
T 2fcr_A 71 EFLYDKLPEV-----DMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGL 145 (173)
T ss_dssp HHHHHTGGGC-----CCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSCCTTEETTEESSE
T ss_pred HHHHhhcccc-----ccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEeecccCCcccccchhhhCCeeeee
Confidence 999 887642 5889999999999999 8 6999999999999999999987652 22
Q ss_pred --ccC--CCCcHHhHHHHHHHHHHHH
Q 005624 239 --GDD--DQCIEDDFSAWRELVWPEL 260 (687)
Q Consensus 239 --gD~--~~~~e~~f~~W~~~l~~~L 260 (687)
+.+ +...+++++.|.+++++.|
T Consensus 146 ~~~~~~~~~~~~~~i~~w~~~i~~~~ 171 (173)
T 2fcr_A 146 PLDMVNDQIPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp EEETTTCSSCHHHHHHHHHHHHHHHH
T ss_pred eecCCCCccccHHHHHHHHHHHHHHh
Confidence 222 2246888999999998776
|
| >2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-21 Score=203.37 Aligned_cols=173 Identities=15% Similarity=0.195 Sum_probs=131.2
Q ss_pred CChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCc-cchhhc-ccCCCCCCCCCceeeEEEee
Q 005624 449 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL-CSTWMK-NSLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~-~S~~L~-~~~~~~~~~~~~~~~v~v~~ 526 (687)
..+|||+.+.+|....|+|||+|+|.. .+.++|+|+. ...|. +|+||+ ++.+|+ .+.|..+.
T Consensus 39 ~~pGQ~v~l~~~~g~~R~ySi~s~~~~-~~~l~i~Vk~---------~~~G~g~S~~L~~~l~~Gd------~v~v~gP~ 102 (321)
T 2pia_A 39 FEAGANLTVAVPNGSRRTYSLCNDSQE-RNRYVIAVKR---------DSNGRGGSISFIDDTSEGD------AVEVSLPR 102 (321)
T ss_dssp CCTTCEEEEECTTSCEEEEECCSCTTC-CSEEEEEEEC---------CTTSCSHHHHHHHSCCTTC------EEEECCCB
T ss_pred CCCCCEEEEECCCCCcEEEEeCCCCCC-CCeEEEEEEE---------ecCCcchhHHHHhcCCCCC------EEEEeCCc
Confidence 357888866556667899999999863 4678887752 23577 899999 677665 45666667
Q ss_pred CCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 527 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 527 ~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
|.|.++.+ ..|++|||+|||||||++|++++...+ . .+++||||+|+++ |++|.+||+++. .+. ++.+.+
T Consensus 103 g~f~l~~~-~~~~vliagG~GItP~~s~l~~l~~~~----~-~~v~l~~~~r~~~-~~~~~~el~~l~-~~~--~~~~~~ 172 (321)
T 2pia_A 103 NEFPLDKR-AKSFILVAGGIGITPMLSMARQLRAEG----L-RSFRLYYLTRDPE-GTAFFDELTSDE-WRS--DVKIHH 172 (321)
T ss_dssp CCSCCCTT-CSEEEEEEEGGGHHHHHHHHHHHHHHC----S-SEEEEEEEESCGG-GCTTHHHHHSTT-TTT--TEEEEE
T ss_pred cccccCCC-CCCEEEEEecccHhHHHHHHHHHHHcC----C-CcEEEEEEECChh-hhHHHHHHhcCc-cCC--eEEEEE
Confidence 88998765 678999999999999999999987643 1 5799999999997 999999999885 222 355566
Q ss_pred ecCCC-CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 607 SREGP-TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 607 Sr~~~-~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
+++.. .+.++++.+.+ ...+..+|+||| ++|+++|++.|.+
T Consensus 173 ~~~~~~g~~~~~~ll~~--------~~~~~~vyvCGP-~~m~~~v~~~l~~ 214 (321)
T 2pia_A 173 DHGDPTKAFDFWSVFEK--------SKPAQHVYCCGP-QALMDTVRDMTGH 214 (321)
T ss_dssp CTTCTTSCCCHHHHHSS--------CCTTEEEEEESC-HHHHHHHHHHTTT
T ss_pred CCCcccCccCHHHHhcc--------cCCCCEEEEECC-HHHHHHHHHHHHh
Confidence 76532 33445444332 235789999999 8999999998876
|
| >1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.8e-21 Score=184.76 Aligned_cols=143 Identities=26% Similarity=0.392 Sum_probs=119.5
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
|+++|+|+|+||||+++|+.|++.+... .+++.++.++.. .++.+++++||++||||.|++|+++..|++
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~~----~v~i~~~~~~~~------~~l~~~d~ii~g~pt~~~G~~p~~~~~f~~ 70 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGKD----VADVHDIAKSSK------EDLEAYDILLLGIPTWYYGEAQCDWDDFFP 70 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCTT----TEEEEEGGGCCH------HHHHTCSEEEEECCEETTTEECHHHHHHHH
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccC----ceEEEEcccCCh------hHhhhCCEEEEEEeecCCCcChHHHHHHHh
Confidence 5799999999999999999999999653 367888877653 357789999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCc-h-HHHHHHHHHHHHHHHHcCCcccccc--------------------cc-cc-
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV--------------------GL-GD- 240 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~ak~ld~~L~~lGa~~l~~~--------------------g~-gD- 240 (687)
+|... .|++++++|||+||+. | ++||.+.+.+.+.|++.|++.+... |+ .|
T Consensus 71 ~l~~~-----~l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~s~~~~~~~~~~gl~~~~ 145 (175)
T 1ag9_A 71 TLEEI-----DFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDE 145 (175)
T ss_dssp HHTTC-----CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESSEEECT
T ss_pred hhhhc-----ccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcccccchheeeCCeEEeeecCC
Confidence 99742 4889999999999986 8 7999999999999999999987642 21 12
Q ss_pred CCC--CcHHhHHHHHHHHHHHHHh
Q 005624 241 DDQ--CIEDDFSAWRELVWPELDN 262 (687)
Q Consensus 241 ~~~--~~e~~f~~W~~~l~~~L~~ 262 (687)
+++ ..++++.+|.++|++.|..
T Consensus 146 ~~~~~~~~~~i~~w~~~i~~~~~~ 169 (175)
T 1ag9_A 146 DRQPELTAERVEKWVKQISEELHL 169 (175)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCcccccHHHHHHHHHHHHHHhhh
Confidence 122 2567899999999998864
|
| >2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-21 Score=183.88 Aligned_cols=137 Identities=26% Similarity=0.364 Sum_probs=112.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|++++|+|+|+||||+++|+.|++.+ + . +++.++++++. .++.+++.+||++||||.|++|+++..|+
T Consensus 1 M~k~~I~Y~S~tGnT~~~A~~ia~~l---g--~-~~~~~~~~~~~------~~l~~~d~ii~g~pt~~~g~~p~~~~~f~ 68 (164)
T 2bmv_A 1 MGKIGIFFGTDSGNAEAIAEKISKAI---G--N-AEVVDVAKASK------EQFNSFTKVILVAPTAGAGDLQTDWEDFL 68 (164)
T ss_dssp -CCEEEEECCSSSHHHHHHHHHHHHH---C--S-EEEEEGGGCCH------HHHTTCSEEEEEEEEETTTEECHHHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHc---C--C-cEEEecccCCH------hHHhhCCEEEEEECCcCCCcCcHHHHHHH
Confidence 57899999999999999999999998 2 3 67888887764 35778999999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCc-hH-HHHHHHHHHHHHHHHcCCcccccc-------------------ccccC-
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQ-YE-HFNKIAKVVDEILANQGAKRLVPV-------------------GLGDD- 241 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~ak~ld~~L~~lGa~~l~~~-------------------g~gD~- 241 (687)
++|... .|++++|+|||+||+. |. +||.+++.++++|++ ++++.+. ++..+
T Consensus 69 ~~l~~~-----~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~ 141 (164)
T 2bmv_A 69 GTLEAS-----DFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTSTDGYHFEASKAVEGGKFVGLVIDE 141 (164)
T ss_dssp TTCCTH-----HHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCEESTTCCCSCCTTEETTEESSEEECT
T ss_pred HHHhhh-----hcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccccCCCccccchhhhhcCcccCccCCC
Confidence 888642 4889999999999996 96 699999999999987 7776653 33222
Q ss_pred C---CCcHHhHHHHHHHHHHH
Q 005624 242 D---QCIEDDFSAWRELVWPE 259 (687)
Q Consensus 242 ~---~~~e~~f~~W~~~l~~~ 259 (687)
+ ...++++++|.+++++.
T Consensus 142 ~~~~~~~~~~~~~w~~~l~~~ 162 (164)
T 2bmv_A 142 DNQDDLTDERISKWVEQVKGS 162 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTTT
T ss_pred CCccccCHHHHHHHHHHHHHh
Confidence 1 13578899999988654
|
| >1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-20 Score=177.30 Aligned_cols=142 Identities=22% Similarity=0.386 Sum_probs=119.6
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
|+++|+|+|+||||+++|+.|++.+... .++++++++++. .++.+++.+||++||||.|.+|+++..|++
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~----~v~~~~~~~~~~------~~l~~~d~ii~g~p~y~~g~~p~~~~~fl~ 71 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGND----VVTLHDVSQAEV------TDLNDYQYLIIGCPTLNIGELQSDWEGLYS 71 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTT----TEEEEETTTCCG------GGGGGCSEEEEEEEEETTTEECHHHHHHHT
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcC----CcEEEEcccCCH------HHHhhCCEEEEEEeeCCCCcCCHHHHHHHH
Confidence 6899999999999999999999999653 368889988774 357889999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCc-hH-HHHHHHHHHHHHHHHcCCcccccc-------------------cc--ccC
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQ-YE-HFNKIAKVVDEILANQGAKRLVPV-------------------GL--GDD 241 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~ak~ld~~L~~lGa~~l~~~-------------------g~--gD~ 241 (687)
+|... .+++++++|||+|++. |. +||.+.+.+++.|.++|++.+.+. |+ +.+
T Consensus 72 ~l~~~-----~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~ 146 (169)
T 1obo_A 72 ELDDV-----DFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDED 146 (169)
T ss_dssp TGGGC-----CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTT
T ss_pred Hhhhc-----CcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeecCCCcccccchhhcCCceeeEEeeCC
Confidence 98752 5889999999999984 86 799999999999999999987651 22 222
Q ss_pred --CCCcHHhHHHHHHHHHHHHH
Q 005624 242 --DQCIEDDFSAWRELVWPELD 261 (687)
Q Consensus 242 --~~~~e~~f~~W~~~l~~~L~ 261 (687)
+...+++++.|.+++++.|.
T Consensus 147 ~~~~~~~~~~~~w~~~~~~~l~ 168 (169)
T 1obo_A 147 NQSDLTDDRIKSWVAQLKSEFG 168 (169)
T ss_dssp TCGGGHHHHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHHhc
Confidence 22467889999999998773
|
| >1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-20 Score=176.30 Aligned_cols=142 Identities=22% Similarity=0.383 Sum_probs=118.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
|+++|+|+|+||||+.+|+.|++.+... ..++++++.+++. .++.+++.+||++|||+.|++|++++.|++
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~---~~v~~~~~~~~~~------~~l~~~d~ii~g~pty~~g~~p~~~~~f~~ 71 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGE---SIVDLNDIANADA------SDLNAYDYLIIGCPTWNVGELQSDWEGIYD 71 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTST---TTEEEEEGGGCCG------GGGGGCSEEEEECCEETTTEECHHHHHHGG
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcc---cceEEEEhhhCCH------hHHhhCCEEEEEecccCCCcCCHHHHHHHH
Confidence 5799999999999999999999999653 2468889888764 357889999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCc-hH-HHHHHHHHHHHHHHHcCCcccccc-------------------cc-ccC-
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQ-YE-HFNKIAKVVDEILANQGAKRLVPV-------------------GL-GDD- 241 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~ak~ld~~L~~lGa~~l~~~-------------------g~-gD~- 241 (687)
+|... .++++++++||+||+. |. +||.+.+.+++.|.++|++.+... |+ .|.
T Consensus 72 ~l~~~-----~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~gl~~~~~ 146 (169)
T 1czn_A 72 DLDSV-----NFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDED 146 (169)
T ss_dssp GGGGS-----CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTT
T ss_pred Hhhhh-----ccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcceecchheeCCeeeeeeecCC
Confidence 98642 5889999999999996 85 899999999999999999987631 22 122
Q ss_pred --CCCcHHhHHHHHHHHHHHH
Q 005624 242 --DQCIEDDFSAWRELVWPEL 260 (687)
Q Consensus 242 --~~~~e~~f~~W~~~l~~~L 260 (687)
+...++++.+|.+++++.|
T Consensus 147 ~~~~~~~~~~~~w~~~~~~~~ 167 (169)
T 1czn_A 147 NQPDLTKNRIKTWVSQLKSEF 167 (169)
T ss_dssp TCGGGHHHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHHh
Confidence 2346788999999998866
|
| >5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=154.09 Aligned_cols=132 Identities=15% Similarity=0.187 Sum_probs=106.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCc-hHHHHHHH
Q 005624 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTD-NAARFYKW 185 (687)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pd-na~~F~~~ 185 (687)
|+|+|+|+||||+++|+.|++.+.+.+ ..++++|+.+++. .++.+++.+||++|||+.|.+|+ ++..|+++
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~ 72 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESG--KDVNTINVSDVNI------DELLNEDILILGCSAMTDEVLEESEFEPFIEE 72 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTT--CCCEEEEGGGCCH------HHHTTCSEEEEEECCBTTTBCCTTTHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCC--CeEEEEEhhhCCH------HHHhhCCEEEEEcCccCCCCCChHHHHHHHHH
Confidence 579999999999999999999998875 4578999988874 45788999999999999999897 99999999
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccC--CCCcHHhHHHHHHHH
Q 005624 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELV 256 (687)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~--~~~~e~~f~~W~~~l 256 (687)
|... |+++++++||+++..| |.+.+.++++|+++|++.+.+....+. +... +...+|.++|
T Consensus 73 l~~~------l~~k~~~~f~t~g~~~---~~a~~~l~~~l~~~G~~~v~~~~~~~~~p~~~d-~~~~~~~~~l 135 (138)
T 5nul_A 73 ISTK------ISGKKVALFGSYGWGD---GKWMRDFEERMNGYGCVVVETPLIVQNEPDEAE-QDCIEFGKKI 135 (138)
T ss_dssp HGGG------CTTCEEEEEEEESSSC---SHHHHHHHHHHHHTTCEECSCCEEEESSCGGGH-HHHHHHHHHH
T ss_pred HHhh------cCCCEEEEEEecCCCC---ChHHHHHHHHHHHCCCEEECCceEEecCCCHHH-HHHHHHHHHH
Confidence 9742 7899999999877654 788999999999999998876443332 2222 4444555443
|
| >2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-17 Score=149.25 Aligned_cols=116 Identities=15% Similarity=0.177 Sum_probs=85.9
Q ss_pred EEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHH
Q 005624 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWF 186 (687)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L 186 (687)
++|+|+|+|||||++|++|+ +. + + ++++ +.+ .++.++|++||||+|++|+++..|++.
T Consensus 1 ~~I~Y~S~tGnT~~~A~~ia--~~--~----~---~i~~---------~~~-~~~~ii~g~pt~~~g~~p~~~~~fl~~- 58 (119)
T 2xod_A 1 MLVAYDSMTGNVKRFIHKLN--MP--A----V---QIGE---------DLV-IDEDFILITYTTGFGNVPERVLEFLER- 58 (119)
T ss_dssp CEEEECCSSSHHHHHHHHHT--SC--E----E---ECCT---------TCC-CCSCEEEEECCBTTTBCCHHHHHHHHH-
T ss_pred CEEEEECCChhHHHHHHHhc--cc--C----C---CcCc---------ccc-cCCCEEEEEeecCCCcCCHHHHHHHHH-
Confidence 47999999999999999998 22 2 2 2322 123 478999999999999999999999854
Q ss_pred HhhcCCCCCcCCceEEEEeccCCchHH-HHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHH
Q 005624 187 TEQKEGGEWLQKLKYGVFGLGNRQYEH-FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVW 257 (687)
Q Consensus 187 ~~~~~~~~~l~~~~~aVFGlGds~Y~~-f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~ 257 (687)
+++++|+|||+||+.|.+ ||.+++.++++|. ......+. +..+....+.+.+|.++++
T Consensus 59 ---------~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~---~~~~~~~~-~~~~~~d~~~~~~~~~~i~ 117 (119)
T 2xod_A 59 ---------NNEKLKGVSASGNRNWGDMFGASADKISAKYE---VPIVSKFE-LSGTNNDVEYFKERVREIA 117 (119)
T ss_dssp ---------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHT---CCEEEEEE-TTCCHHHHHHHHHHHHHHT
T ss_pred ---------cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhC---CccEEEEe-cCCCHHHHHHHHHHHHHhc
Confidence 457899999999999976 9999999999874 33222221 2222222455788988775
|
| >3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-16 Score=150.76 Aligned_cols=142 Identities=13% Similarity=0.024 Sum_probs=108.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
|+|+|+|+|+||||+.+|+.|++.+.+.+ ..++++|+.+.+.++ ...++.+++.+||++|||| |.+|+ ..|++
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~~~~~~--~~~~~~~~d~ii~Gspty~-g~~p~--~~fl~ 73 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTG--VAVEMVDLRAVDPQE--LIEAVSSARGIVLGTPPSQ-PSEAV--ATALS 73 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTT--CCEEEEETTTCCHHH--HHHHHHHCSEEEEECCBSS-CCHHH--HHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCC--CeEEEEECCCCCHHH--HHHHHHhCCEEEEEcCCcC-CchhH--HHHHH
Confidence 57999999999999999999999998765 457889998876532 3345678999999999996 88775 88998
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccC--CCCcHHhHHHHHHHHHHHHHh
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWPELDN 262 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~--~~~~e~~f~~W~~~l~~~L~~ 262 (687)
.|... .++++++++||.+ .++|.+.+.+++.|+++|++.+.+...... +....+...+|.+.+...|.+
T Consensus 74 ~l~~~-----~l~gk~v~~fgs~----g~~g~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~l~~ 144 (161)
T 3hly_A 74 TIFAA-----AHNKQAIGLFDSY----GGDDEPIDALLAQFRNLGLHTAFPPIRVKDQPTEAIYQQCEESGTDLGQWLTR 144 (161)
T ss_dssp HHHHH-----CCTTSEEEEECCC----CSSBCCHHHHHHHHHHTTCEESSSCBCCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhh-----hhCCCEEEEEEcC----CCCcHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 88753 3789999999964 445788999999999999998866433322 222334566777777666653
|
| >3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-16 Score=148.90 Aligned_cols=143 Identities=11% Similarity=0.052 Sum_probs=111.2
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCC-CCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F 182 (687)
.++|+|+|+|+||||+++|+.|++.+.+.+ ..++++|+.+. +.+ +...++..++.+||++|||+ |++| +..|
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g--~~v~~~~~~~~~~~~--~~~~~~~~~d~ii~Gspty~-g~~p--~~~~ 76 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTG--VGVDVVDLGAAVDLQ--ELRELVGRCTGLVIGMSPAA-SAAS--IQGA 76 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTT--CEEEEEESSSCCCHH--HHHHHHHTEEEEEEECCBTT-SHHH--HHHH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCC--CeEEEEECcCcCCHH--HHHHHHHhCCEEEEEcCcCC-CCcc--HHHH
Confidence 468999999999999999999999998765 46788999877 543 23345778999999999996 8877 4889
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccC--CCCcHHhHHHHHHHHHHHH
Q 005624 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWPEL 260 (687)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~--~~~~e~~f~~W~~~l~~~L 260 (687)
++.|... .++++++++||.+ .++|.+.+.+.+.|+++|++.+.+...... +....+...+|.+.|.+.+
T Consensus 77 l~~l~~~-----~~~~k~va~fgs~----g~~~~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~~ 147 (159)
T 3fni_A 77 LSTILGS-----VNEKQAVGIFETG----GGDDEPIDPLLSKFRNLGLTTAFPAIRIKQTPTENTYKLCEEAGTDLGQWV 147 (159)
T ss_dssp HHHHHHH-----CCTTSEEEEECCS----SSCBCCHHHHHHHHHHTTCEESSSCBCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh-----cccCCEEEEEEcC----CCCcHHHHHHHHHHHHCCCEEecCceEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 9888754 3789999999954 567888999999999999998876444332 2223345667877777666
Q ss_pred Hh
Q 005624 261 DN 262 (687)
Q Consensus 261 ~~ 262 (687)
.+
T Consensus 148 ~~ 149 (159)
T 3fni_A 148 TR 149 (159)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-16 Score=162.28 Aligned_cols=166 Identities=13% Similarity=0.093 Sum_probs=113.0
Q ss_pred ChHHHHHHHcCC----CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005624 450 PLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 450 p~~~~l~~~~p~----l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~ 525 (687)
.+|||+.+.+|. ...|+|||+|.+. +++.|.+.++ ...|.+|+||+++.+|+ .+.|..+
T Consensus 40 ~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~---~~~~i~~~~~--------~~~G~~S~~l~~l~~Gd------~l~v~gP 102 (252)
T 2gpj_A 40 QESAYIKLLFPQAGERPLMRTYTIRQQRD---DEIDVDFVLH--------DTDGPASSWAKTAQVGE------LIQIGGP 102 (252)
T ss_dssp CTTCEEEEEECCTTSCCEEEEEECCEEET---TEEEEEEECC--------SSCCHHHHHHHHCCTTC------EEEEEEE
T ss_pred CCCCeEEEEcccCCCCCCCCceeeeccCC---CEEEEEEEEe--------CCCCcHHHHHhhCCCCC------EEEEecC
Confidence 468888765663 4569999999764 5666655321 11388999999887776 4677778
Q ss_pred eCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEE
Q 005624 526 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 605 (687)
Q Consensus 526 ~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~a 605 (687)
.|.|.++.+ ..+++|||+||||||+++++++... ..+..+|+++|+.+ |.++. + .....+++.+
T Consensus 103 ~G~f~l~~~-~~~~lliagGtGitPi~s~l~~l~~-------~~~~~~~~~~~~~~-d~~~l---~----~~~~~~v~~~ 166 (252)
T 2gpj_A 103 GLKKLINFE-ADWFLLAGDMTALPAISVNLAKLPN-------NAVGYAVIEVLSEA-DIQPL---V----HPEHVELHWV 166 (252)
T ss_dssp ECCCCCCSS-SSEEEEEEEGGGHHHHHHHHHHSCT-------TCEEEEEEEESSGG-GCCCC---C----CCTEEEEEEE
T ss_pred CCCCcCCCC-CceEEEEcchhhHHHHHHHHHhCCC-------CCcEEEEEEECCHH-Hhhcc---c----CCCCcEEEEE
Confidence 889998754 4789999999999999999998632 14678899999975 65432 1 1223356666
Q ss_pred EecCCCC-ccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHH
Q 005624 606 FSREGPT-KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLH 655 (687)
Q Consensus 606 fSr~~~~-k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~ 655 (687)
++.+... ...+.+.+.+. .+ ..+.++|+||| ++|+++|++.|.
T Consensus 167 ~~~~~~~~g~~~~~~l~~~------~~~~~~~~vy~CGP-~~m~~av~~~l~ 211 (252)
T 2gpj_A 167 INPEADPEGRPLVERIAQL------PWLAGEPAVWIACE-FNSMRALRRHFK 211 (252)
T ss_dssp ECSSCCTTCHHHHHHHTTS------CCCSSCEEEEEEEE-HHHHHHHHHHHH
T ss_pred eCCCCCcccHHHHHHHHhc------cCCCCCcEEEEEcC-HHHHHHHHHHHH
Confidence 6543221 12223222211 01 24578999999 899999999886
|
| >1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-16 Score=146.70 Aligned_cols=120 Identities=18% Similarity=0.206 Sum_probs=86.7
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
|++.|+|+|+||||+.+|++|++.+ .+++.+ .+..++.+|+++||||+|++|+++.+|++
T Consensus 9 m~i~I~Y~S~TGNt~~vA~~l~~~~----------~~~i~~----------~~~~~~~~ilv~pTyG~G~~P~~v~~Fl~ 68 (139)
T 1rlj_A 9 AMVQIIFDSKTGNVQRFVNKTGFQQ----------IRKVDE----------MDHVDTPFVLVTYTTNFGQVPASTQSFLE 68 (139)
T ss_dssp SCCEEEECCSSSHHHHHHTTSCCSE----------EEETTS----------CSCCCSCEEEEECCBGGGBCCHHHHHHHH
T ss_pred CEEEEEEECCChhHHHHHHHhcccc----------ceEecc----------ccccCCCEEEEEcCcCCCcCcHHHHHHHH
Confidence 5679999999999999999986420 123322 13445678999999999999999998884
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHH
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 258 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~ 258 (687)
. ..++.|+|||+||++| +.||.+++.+++++ |...+...- .+-.....+.+.+|.+++|.
T Consensus 69 ~----------~~~~~~~V~g~Gd~~yg~~f~~a~~~i~~~~---~~~~~~~~e-l~g~~~D~~~~~~~~~~~~~ 129 (139)
T 1rlj_A 69 K----------YAHLLLGVAASGNKVWGDNFAKSADTISRQY---QVPILHKFE-LSGTSKDVELFTQEVERVVT 129 (139)
T ss_dssp H----------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHH---TCCEEEEEE-TTCCHHHHHHHHHHHHHHHH
T ss_pred h----------CCCCEEEEEecCCCcHHHHHHHHHHHHHHHc---CCCCcceEE-EcCCHHHHHHHHHHHHHHHH
Confidence 2 1347899999999999 78999999998776 443322211 11111234568899988875
|
| >2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-15 Score=137.52 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=105.3
Q ss_pred EEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCc-hHHHHHHH
Q 005624 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTD-NAARFYKW 185 (687)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pd-na~~F~~~ 185 (687)
++|+|+|+||||+.+|+.|++.+.+.+ ..++++++.+++. .++.+++.+||++|||+.|.+|+ +++.|+++
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~ 73 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAG--ADVESVRFEDTNV------DDVASKDVILLGCPAMGSEELEDSVVEPFFTD 73 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTT--CCEEEEETTSCCH------HHHHTCSEEEEECCCBTTTBCCHHHHHHHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCC--CeEEEEEcccCCH------HHHhcCCEEEEEccccCCCCCCHHHHHHHHHH
Confidence 789999999999999999999998765 4578889988764 35778999999999999898888 49999999
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHH
Q 005624 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVW 257 (687)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~ 257 (687)
+.. .++++++++||.+... ||.+.+.+++.|..+|++.+ +....+...+..+.+.+|.+++.
T Consensus 74 l~~------~l~~k~~~~~~t~g~~---~~~~~~~l~~~l~~~g~~~~-~~~~~~g~~~~~~~~~~~~~~l~ 135 (137)
T 2fz5_A 74 LAP------KLKGKKVGLFGSYGWG---SGEWMDAWKQRTEDTGATVI-GTAIVNEMPDNAPECKELGEAAA 135 (137)
T ss_dssp HGG------GCSSCEEEEEEEESSC---CSHHHHHHHHHHHHTTCEEE-EEEEEESSSSSCTHHHHHHHHHH
T ss_pred hhh------hcCCCEEEEEEecCCC---CchHHHHHHHHHHHCCCEEc-CcEEEeeCCChHHHHHHHHHHHh
Confidence 963 4889999999964322 68899999999999999987 32222211111566777876653
|
| >3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.3e-16 Score=149.03 Aligned_cols=131 Identities=12% Similarity=0.242 Sum_probs=88.3
Q ss_pred eeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhc---CCCCCcEEEEEeeccCCcccc-cHHHHHHHHHc----
Q 005624 525 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA---GAELGPSLLFFGCRNRKMDYI-YEDELNNFVQS---- 596 (687)
Q Consensus 525 ~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~---~~~~~~~~LffG~R~~~~D~l-y~del~~~~~~---- 596 (687)
+.|.|.++.....|+||||+|||||||+++++++...... +....+++|+||+|+.+ +++ |.+||+++.+.
T Consensus 6 P~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~-~~~w~~~~l~~l~~~~~~~ 84 (186)
T 3a1f_A 6 PFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTH-AFEWFADLLQLLESQMQER 84 (186)
T ss_dssp TTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTT-TTHHHHHHHHHHHHHHHHT
T ss_pred CCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcc-hHHHHHHHHHHHHHHHhhc
Confidence 3566765434467899999999999999999998765321 11247899999999997 887 99999999875
Q ss_pred --CCCcEEEEEEecCCC---Cccccch-----hh----------hcchHHHHh----cc-cCCcEEEEECCchhhHHHHH
Q 005624 597 --GALSQLIVAFSREGP---TKEYVQH-----KM----------MEKSSDIWN----ML-SEGAYLYVCGDAKSMARDVH 651 (687)
Q Consensus 597 --g~~~~l~~afSr~~~---~k~yVq~-----~l----------~e~~~~v~~----~i-~~~~~iYvCG~a~~M~~~V~ 651 (687)
...+++++.+|++.. .+.|+|. .+ +-+.+.+.+ .+ ..+..||+||| ++|+++|+
T Consensus 85 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP-~~m~~~v~ 163 (186)
T 3a1f_A 85 NNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGP-EALAETLS 163 (186)
T ss_dssp TCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESC-HHHHHHHH
T ss_pred cCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCC-HHHHHHHH
Confidence 235578889998532 1223331 00 111122222 11 13678999999 89999999
Q ss_pred HHHHHH
Q 005624 652 RTLHTI 657 (687)
Q Consensus 652 ~~L~~i 657 (687)
++|.+.
T Consensus 164 ~~l~~~ 169 (186)
T 3a1f_A 164 KQSISN 169 (186)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988764
|
| >3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.2e-15 Score=140.32 Aligned_cols=119 Identities=11% Similarity=0.049 Sum_probs=81.1
Q ss_pred eEEEeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCc
Q 005624 521 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS 600 (687)
Q Consensus 521 ~v~v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~ 600 (687)
.|..+.|+|.... ..+|++|||+||||||+++++++....+ .+++|+ |+|+++ |.+|.+||+++..+ .
T Consensus 9 ~v~gP~G~~f~~~-~~~~~llIaGG~GItPl~sm~~~l~~~~------~~v~l~-g~r~~~-d~~~~~el~~l~~~---~ 76 (158)
T 3lrx_A 9 NVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG------NDVTTL-HVTFEP-MVILKEELEKAVTR---H 76 (158)
T ss_dssp ---CCCCCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHHT------CEEEEE-EECBGG-GCCSHHHHHHHSSE---E
T ss_pred EEECCCCCCCccC-CCCeEEEEEccCcHHHHHHHHHHHHhcC------CcEEEE-EeCCHH-HhhHHHHHHHHHhc---e
Confidence 4555667755433 4689999999999999999999876532 478999 999997 99999999988642 1
Q ss_pred EEEEEEecCC------C--CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 601 QLIVAFSREG------P--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 601 ~l~~afSr~~------~--~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
.+..++++.. + .+++|++.+.+. +.+ .+...||+||| ++|+++|.+.|.+.
T Consensus 77 ~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~---l~~--~~~~~vy~CGP-~~mm~~v~~~l~~~ 135 (158)
T 3lrx_A 77 IVEPVPLNPNQDFLANMKNVSQRLKEKVREL---LES--EDWDLVFMVGP-VGDQKQVFEVVKEY 135 (158)
T ss_dssp EECCBCCCTTSCHHHHHHHHHHHHHHHHHHH---HHH--SCCSEEEEESC-HHHHHHHHHHHGGG
T ss_pred EEEEeeccccccCCCCCCCCcccccHHHHHh---hcc--CCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 2222233321 1 245666544321 111 14568999999 99999999887653
|
| >3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-14 Score=136.43 Aligned_cols=118 Identities=11% Similarity=0.059 Sum_probs=81.8
Q ss_pred EEEeeCCcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcE
Q 005624 522 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 601 (687)
Q Consensus 522 v~v~~~~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~ 601 (687)
|..+.|+|....+ .+|++|||+|+||||+++++++....+ .++.|+ |+|+++ |.+|.+||+++.++ ..
T Consensus 5 v~GP~G~~~~~~~-~~~~llIaGG~GiaPl~sm~~~l~~~~------~~v~l~-g~R~~~-~~~~~~el~~l~~~---~~ 72 (142)
T 3lyu_A 5 VAGPLGTPVPMEK-FGKILAIGAYTGIVEVYPIAKAWQEIG------NDVTTL-HVTFEP-MVILKEELEKAVTR---HI 72 (142)
T ss_dssp --CCCSCCBCCCC-CSEEEEEEETTHHHHHHHHHHHHHHTT------CEEEEE-EEEEGG-GCCSHHHHHTTSSE---EE
T ss_pred eeCCCCCCccCCC-CCeEEEEECcCcHHHHHHHHHHHHhcC------CcEEEE-EeCCHH-HhhHHHHHHHHHhh---eE
Confidence 4445677665433 689999999999999999999876532 468999 999997 99999999987542 12
Q ss_pred EEEEEecCCC--------CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 602 LIVAFSREGP--------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 602 l~~afSr~~~--------~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
+..++++... .+++|.+.+.+. ... .+...||+||| ++|+++|.+.+.+.
T Consensus 73 ~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~----~~~-~~~~~vy~CGP-~~Mm~av~~~l~~~ 130 (142)
T 3lyu_A 73 VEPVPLNPNQDFLANMKNVSQRLKEKVREL----LES-EDWDLVFMVGP-VGDQKQVFEVVKEY 130 (142)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHHHHH----HHS-SCCSEEEEESC-HHHHHHHHHHHHHH
T ss_pred EEEeecccccCCCCCCCCCccchhHHHHHh----ccc-CCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 3333444211 245666544332 111 24568999999 99999998877754
|
| >3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C* | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-12 Score=122.94 Aligned_cols=98 Identities=18% Similarity=0.417 Sum_probs=74.1
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCC----CCCCCchH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYG----DGEPTDNA 179 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG----~G~~pdna 179 (687)
+|..+|+|+|.||||++|+++|... . .+ +++.+- +.+..++.+|+++|||| .|+.|+.+
T Consensus 20 ~~~~ivYfsS~TGNT~rFv~kL~~~-------~-~~-I~~~~~--------~~~~~~ep~vlv~PTYg~g~~~G~vP~~v 82 (153)
T 3n3a_C 20 HMSQLVYFSSSSENTQRFIERLGLP-------A-VR-IPLNER--------ERIQVDEPYILIVPSYGGGGTAGAVPRQV 82 (153)
T ss_dssp ---CEEECCCTTCHHHHHHHHHCSC-------C-EE-CCSSTT--------CCCCCCSCEEEEEECCTTSSSSSSSCHHH
T ss_pred cceeEEEEECCCcCHHHHHHHhCCc-------c-cc-cccccC--------cccccCCCEEEEEeccCCCCcCCcCcHHH
Confidence 4556899999999999999988421 1 12 233211 12345678999999999 59999999
Q ss_pred HHHHHHHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHH
Q 005624 180 ARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILA 226 (687)
Q Consensus 180 ~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~ 226 (687)
.+|++.+.+ .++.++|+|.||++| +.||.+++.+.+.+.
T Consensus 83 ~dFl~~~~n--------~~~~~gVigsGN~nfg~~Fc~A~d~ia~k~~ 122 (153)
T 3n3a_C 83 IRFLNDEHN--------RALLRGVIASGNRNFGEAYGRAGDVIARKCG 122 (153)
T ss_dssp HHHHTSHHH--------HHHEEEEEEEECGGGGGGTTHHHHHHHHHHT
T ss_pred HHHHhhhcc--------cCcEEEEEecCCCchhHHHHHHHHHHHHHhC
Confidence 999876643 346799999999998 999999999999874
|
| >1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 | Back alignment and structure |
|---|
Probab=99.31 E-value=7.9e-12 Score=136.23 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=112.8
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
.++++|+|+|+||||+++|+.|++.+.+.+ ..++++++.+.+.+ +...++.+++.+||++||||.|.+| .++.|+
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g--~~v~~~~~~~~~~~--~~~~~~~~~d~ii~gsp~~~~~~~~-~~~~~l 326 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEG--CTVKLMWCKACHHS--QIMSEISDAGAVIVGSPTHNNGILP-YVAGTL 326 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEETTTSCHH--HHHHHHHTCSEEEEECCCBTTBCCH-HHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCC--CeEEEEECCCCCHH--HHHHHHHHCCEEEEECCccCCCchH-HHHHHH
Confidence 589999999999999999999999998754 45788888876542 2334578999999999999766655 799999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccC--CCCcHHhHHHHHHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWPELD 261 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~--~~~~e~~f~~W~~~l~~~L~ 261 (687)
+++... .++++++++||. |.++|.+.+.+.+.|..+|++.+.+....+. +....+.+.+|.+++...+.
T Consensus 327 ~~l~~~-----~l~~k~~~~f~t----~g~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~ 397 (402)
T 1e5d_A 327 QYIKGL-----RPQNKIGGAFGS----FGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQLKTMAQTIARALK 397 (402)
T ss_dssp HHHHHT-----CCCSCEEEEEEE----ESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhc-----ccCCCEEEEEEc----CCCccHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHh
Confidence 998753 478999999995 5567899999999999999998864222221 22233456778877776665
Q ss_pred hh
Q 005624 262 NL 263 (687)
Q Consensus 262 ~~ 263 (687)
+.
T Consensus 398 ~~ 399 (402)
T 1e5d_A 398 AK 399 (402)
T ss_dssp HH
T ss_pred hh
Confidence 43
|
| >2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-11 Score=120.12 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=110.1
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHh-hcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F 182 (687)
|++|+|+|+|.||||+.+|+.|++.+.+ .+ ..++++|+.+.+. +++.+++.+||++||| .|.+|..++.|
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g--~~v~~~~l~~~~~------~~l~~aD~ii~gsP~y-~g~~~~~lk~f 74 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLEG--TEVRLKHVDEATK------EDVLWADGLAVGSPTN-MGLVSWKMKRF 74 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTT--EEEEEEETTTCCH------HHHHHCSEEEEEEECB-TTBCCHHHHHH
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhhcCC--CeEEEEEhhhCCH------HHHHhCCEEEEEeCcc-CCcCCHHHHHH
Confidence 6799999999999999999999999987 54 5678899988763 4577899999999999 89999999999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEec-cCCchHHHHHHHHHHHHHHHHcCCccccc-----------cc---cccCC-CCcH
Q 005624 183 YKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVP-----------VG---LGDDD-QCIE 246 (687)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~ak~ld~~L~~lGa~~l~~-----------~g---~gD~~-~~~e 246 (687)
++++.... ...++++++++||. |+.. ..+....+.+.+.|..+|...+.. .| .+.-+ ....
T Consensus 75 ld~~~~~~--~~~l~gk~~~~~~t~g~~~-g~~~~~l~~l~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~ 151 (188)
T 2ark_A 75 FDDVLGDL--WGEIDGKIACAFSSSGGWG-GGNEVACMSILTMLMNFGFLVFGVTDYVGKKFTLHYGAVVAGEPRSEEEK 151 (188)
T ss_dssp HHHTGGGT--TTSCTTCEEEEEEEESSBT-SSHHHHHHHHHHHHHHTTCEECCEEEEEETTEEESSSEEEESSCCSHHHH
T ss_pred HHHHhhhh--HHHhCCCeEEEEEECCCCC-CCHHHHHHHHHHHHHHCCcEEeCCCccccccccCCCcceeecCCCcHHHH
Confidence 99987410 12488999999999 5543 224566677888888888864421 01 11111 1223
Q ss_pred HhHHHHHHHHHHHHHhhh
Q 005624 247 DDFSAWRELVWPELDNLL 264 (687)
Q Consensus 247 ~~f~~W~~~l~~~L~~~~ 264 (687)
+....|.+.+...+.++.
T Consensus 152 ~~~~~~g~~la~~~~~~~ 169 (188)
T 2ark_A 152 EACRRLGRRLAEWVAIFV 169 (188)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456678888877776654
|
| >2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-11 Score=121.16 Aligned_cols=129 Identities=13% Similarity=-0.016 Sum_probs=100.7
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcch-------------hHHHhccCCCeEEEEeeC
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEED-------------EYEEKLKKENIVFFFLAT 169 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~-------------~~~~~l~~~~~vi~~~sT 169 (687)
.|++|+|+|+|.+|||+.+|+.|++.+.+.+ ..++++|+.+...... ...+++.+++.+||++||
T Consensus 4 ~M~kilii~~S~~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~ 81 (200)
T 2a5l_A 4 SSPYILVLYYSRHGATAEMARQIARGVEQGG--FEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPT 81 (200)
T ss_dssp -CCEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEEC
T ss_pred CcceEEEEEeCCCChHHHHHHHHHHHHhhCC--CEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcCh
Confidence 3679999999999999999999999998765 5678888877411000 013567889999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005624 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
| .|.+|..++.|++++.... ....++++++++|+.+...+..++.+...+.+.|..+|++.+.+
T Consensus 82 y-~~~~~~~lk~~ld~~~~~~-~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~ 145 (200)
T 2a5l_A 82 R-FGNMASPLKYFLDGTSSLW-LTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGI 145 (200)
T ss_dssp B-TTBCCHHHHHHHHTCHHHH-HHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred h-ccCccHHHHHHHHHHHHHh-hccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECC
Confidence 9 6899999999999886421 01247899999999987776556778899999999999886643
|
| >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.7e-12 Score=137.80 Aligned_cols=119 Identities=16% Similarity=0.081 Sum_probs=98.5
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
.++++|+|+|+||||+++|+.+++.+.+.+ ..++++++.+.+.. +....+..++.+||++|||+.|.+| .++.|+
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g--~~v~~~~~~~~~~~--~~~~~~~~~d~ii~g~p~y~~~~~~-~~~~~l 325 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVAGG--CEVKLFKLSVSDRN--DVIKEILDARAVLVGSPTINNDILP-VVSPLL 325 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEEGGGSCHH--HHHHHHHHCSEEEEECCCBTTBCCG-GGHHHH
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHhcC--CeEEEEECCCCCHH--HHHHHHHHCCEEEEECCccCccchH-HHHHHH
Confidence 578999999999999999999999998765 45788888776532 2334567899999999999766666 599999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccc
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPV 236 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~ 236 (687)
+++... .++++++++||. |.++|.+.+.+++.|..+|++.+.+.
T Consensus 326 ~~l~~~-----~~~~k~~~~~~s----~g~~~~a~~~l~~~l~~~g~~~~~~~ 369 (398)
T 1ycg_A 326 DDLVGL-----RPKNKVGLAFGA----YGWGGGAQKILEERLKAAKIELIAEP 369 (398)
T ss_dssp HHHHHH-----CCSSCEEEEEEE----ESSSCCHHHHHHHHHHHTTCEESCSS
T ss_pred HHHhcc-----ccCCCEEEEEEe----CCCchHHHHHHHHHHHHCCeEEecCc
Confidence 999753 378999999995 56689999999999999999988653
|
| >4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.4e-12 Score=137.77 Aligned_cols=122 Identities=18% Similarity=0.151 Sum_probs=97.4
Q ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCe-eEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHH
Q 005624 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAI-FKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA 180 (687)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~-v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~ 180 (687)
....+|+|+|+|++||||++|+.|++.+.++|.... +++.|++..+. .+...++.+++.+||++||| +|++++.++
T Consensus 263 ~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~--s~i~~~i~~~~~ivlGspT~-~~~~~p~~~ 339 (410)
T 4dik_A 263 PKKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAI--SEILKDIPDSEALIFGVSTY-EAEIHPLMR 339 (410)
T ss_dssp CCTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCH--HHHHHHSTTCSEEEEEECCT-TSSSCHHHH
T ss_pred ccccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCH--HHHHHHHHhCCeEEEEeCCc-CCcCCHHHH
Confidence 345689999999999999999999999998873221 13344444332 33456788899999999999 578888999
Q ss_pred HHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005624 181 RFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 181 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
.|+..+... .+++++.++|| +|.|-+.+.+.+.++|+++|++.+-+
T Consensus 340 ~~l~~l~~~-----~~~~K~~~~FG----SyGWsg~a~~~~~~~l~~~~~~~v~~ 385 (410)
T 4dik_A 340 FTLLEIIDK-----ANYEKPVLVFG----VHGWAPSAERTAGELLKETKFRILSF 385 (410)
T ss_dssp HHHHHHHHH-----CCCCCEEEEEE----ECCCCCTTSCCHHHHHTTSSCEEEEE
T ss_pred HHHHHHHhc-----ccCCCEEEEEE----CCCCCcHHHHHHHHHHHHCCCEEECc
Confidence 999988765 37899999999 56777889999999999999886544
|
| >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.2e-11 Score=129.86 Aligned_cols=146 Identities=14% Similarity=0.003 Sum_probs=110.2
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHH
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F 182 (687)
.+++|+|+|+|.||||+++|+.|++.+.+.+ ..++++++.+.+.. ...+++.+++.+||++||| .|.+|..++.|
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g--~~v~~~~l~~~~~~--~~~~~l~~~D~iiigsP~y-~~~~~~~~k~f 329 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARSTG--CETVLLEMTSSDIT--KVALHTYDSGAVAFASPTL-NNTMMPSVAAA 329 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEEGGGCCHH--HHHHHHHTCSEEEEECCCB-TTBCCHHHHHH
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhCC--CeEEEEEcCcCCHH--HHHHHHHhCCEEEEEcCcc-CcCchHHHHHH
Confidence 4689999999999999999999999998754 45788888876642 2234688999999999999 56677779999
Q ss_pred HHHHHhhcCCCCCc-CCceEEEEeccCCchHHHHHHHHHHHHHHHH-cCCcccccc-c--cccCCCCcHHhHHHHHHHHH
Q 005624 183 YKWFTEQKEGGEWL-QKLKYGVFGLGNRQYEHFNKIAKVVDEILAN-QGAKRLVPV-G--LGDDDQCIEDDFSAWRELVW 257 (687)
Q Consensus 183 ~~~L~~~~~~~~~l-~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~-lGa~~l~~~-g--~gD~~~~~e~~f~~W~~~l~ 257 (687)
++++... .+ +++++++||.|+.. +.+.+.+.+.|.. +|++.+.+. . .+.-+....+...+|.+++.
T Consensus 330 ld~l~~~-----~~~~~K~~~~~~t~g~~----~~a~~~l~~~l~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~g~~l~ 400 (414)
T 2q9u_A 330 LNYVRGL-----TLIKGKPAFAFGAFGWS----NRAVPDIVAELRDGCKADVYDEKGITFKFNYTEELLEQAYNAGVDLG 400 (414)
T ss_dssp HHHHHHH-----TTTTTSBEEEEEEESSS----CCHHHHHHHHHHHTSCCBCCCSSCEEEESCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhh-----cccCCCEEEEEEecCCC----chhHHHHHHHHHhhcCcEEccCccEEEeeCCCHHHHHHHHHHHHHHH
Confidence 9999753 36 89999999987654 5567899999999 999977643 1 12212222345667777666
Q ss_pred HHHHh
Q 005624 258 PELDN 262 (687)
Q Consensus 258 ~~L~~ 262 (687)
..+.+
T Consensus 401 ~~~~~ 405 (414)
T 2q9u_A 401 KRAIA 405 (414)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
|
| >3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=114.35 Aligned_cols=125 Identities=17% Similarity=0.102 Sum_probs=96.8
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHh-hcCCCeeEEecCCCCCCcc--------------hhHHHhccCCCeEEEEee
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEE--------------DEYEEKLKKENIVFFFLA 168 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~--------------~~~~~~l~~~~~vi~~~s 168 (687)
||+|+|+|+|.+|||+.+|+.|++.+.+ .+ ..++++|+.+..... .+ .+++..++.+||++|
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii~gsP 77 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKVDG--AEVVVKRVPETMPPQLFEKAGGKTQTAPVAT-PQELADYDAIIFGTP 77 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTSTT--CEEEEEECCCCSCHHHHHHTTCCCCCSCBCC-GGGGGGCSEEEEEEE
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhcCC--CEEEEEEccccCchhhhhhcccccccCchhh-HHHHHHCCEEEEEeC
Confidence 5789999999999999999999999987 54 567888887642110 01 356788999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
|| .|.+|..++.|++++.... ....++++++++|+.+... .....+.+.+...|..+|+..+.
T Consensus 78 ~y-~~~~~~~lk~~ld~~~~~~-~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 78 TR-FGNMSGQMRTFLDQTGGLW-ASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp EE-TTEECHHHHHHHTTCHHHH-HHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred hh-cCCchHHHHHHHHHhhhhh-hhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 99 8999999999999876421 0124889999999987655 34456778888889888987554
|
| >3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.8e-11 Score=113.58 Aligned_cols=133 Identities=13% Similarity=0.098 Sum_probs=89.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcc--------------------h---hHHHhccCC
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE--------------------D---EYEEKLKKE 160 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~--------------------~---~~~~~l~~~ 160 (687)
+++++|+|.|.||||+++|+.|++.+.... +++.+...|..++ . ....++..+
T Consensus 4 ~~kilIvY~S~tG~T~~vA~~Ia~~l~~~~----~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~y 79 (162)
T 3klb_A 4 DRKILVAYFSCSGVTKAVAEKLAAITGADL----YEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPEKY 79 (162)
T ss_dssp GSCEEEEECCSSSHHHHHHHHHHHHHTCEE----EECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGGGC
T ss_pred CCCEEEEEECCCchHHHHHHHHHHHhCCCe----EEEEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChhhC
Confidence 578999999999999999999999885321 2233333332100 0 001347789
Q ss_pred CeEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchHHHHHHHHHHHHHHHHcCCccccccccc
Q 005624 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLG 239 (687)
Q Consensus 161 ~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~g 239 (687)
+.+||++||| .|.+|..+..|++.+ .++++++++|+. |++.+. .+.+.+.+.|. |++-+-.+. .
T Consensus 80 d~iilG~P~~-~g~~~~~~~~fl~~~--------~l~gk~v~~f~t~g~~~~g---~~~~~l~~~l~--~~~~~~g~~-~ 144 (162)
T 3klb_A 80 EVLFVGFPVW-WYIAPTIINTFLESY--------DFAGKIVVPFATSGGSGIG---NCEKNLHKAYP--DIVWKDGKL-L 144 (162)
T ss_dssp SEEEEEEECB-TTBCCHHHHHHHHTS--------CCTTCEEEEEEECSSCCSH---HHHHHHHHHCT--TSEECCCEE-C
T ss_pred CEEEEEcccc-cCCCCHHHHHHHHhc--------CCCCCEEEEEEEeCCCCcc---HHHHHHHHHcC--CCEeecceE-E
Confidence 9999999999 699999888886543 378999999987 555553 45566766664 555332111 1
Q ss_pred cCCCCcHHhHHHHHHHH
Q 005624 240 DDDQCIEDDFSAWRELV 256 (687)
Q Consensus 240 D~~~~~e~~f~~W~~~l 256 (687)
.....++++.+|.+++
T Consensus 145 -~g~~~~~~v~~W~~~~ 160 (162)
T 3klb_A 145 -NGQITRDLVTEWFEKI 160 (162)
T ss_dssp -CSCCCHHHHHHHHHHT
T ss_pred -eCCCCHHHHHHHHHHh
Confidence 1123578999998764
|
| >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.4e-11 Score=130.40 Aligned_cols=147 Identities=16% Similarity=0.108 Sum_probs=110.0
Q ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHH
Q 005624 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (687)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~ 181 (687)
...++++|+|+|+||||+.+|+.|++.+.+.+ ..++++++.+++.+ ....++.+++.+||++||| .|.+|..++.
T Consensus 254 ~~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g--~~v~~~~~~~~~~~--~~~~~l~~~d~iiigsP~y-~~~~~~~~k~ 328 (404)
T 2ohh_A 254 MVDERVTVIYDTMHGSTRKMAHAIAEGAMSEG--VDVRVYCLHEDDRS--EIVKDILESGAIALGAPTI-YDEPYPSVGD 328 (404)
T ss_dssp CCCSEEEEEECCSSSHHHHHHHHHHHHHHTTT--CEEEEEETTTSCHH--HHHHHHHTCSEEEEECCEE-TTEECTHHHH
T ss_pred CCCCcEEEEEECCChHHHHHHHHHHHHHHhCC--CeEEEEECCCCCHH--HHHHHHHHCCEEEEECccc-cccchHHHHH
Confidence 35689999999999999999999999998754 56788999877642 2345688999999999999 5666778999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccc-ccCCCCcHHhHHHHHHHHHHH
Q 005624 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGL-GDDDQCIEDDFSAWRELVWPE 259 (687)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~-gD~~~~~e~~f~~W~~~l~~~ 259 (687)
|++++...... . |+++++++||+|+.. +.+.+.+.+.|..+|++.+.++.. +..+....+...+|.+++...
T Consensus 329 ~ld~l~~~~~~-~-l~~k~~~~~~~~g~~----~~a~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (404)
T 2ohh_A 329 LLMYLRGLKFN-R-TLTRKALVFGSMGGN----GGATGTMKELLAEAGFDVACEEEVYYVPTGDELDACFEAGRKLAAE 401 (404)
T ss_dssp HHHHHHHHCGG-G-TCCEEEEEEEEESSS----CCHHHHHHHHHHHTTEEEEEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccc-c-cCCCEEEEEEecCCC----ChhHHHHHHHHHHCCCEEEeEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 99999753211 1 589999999987654 567789999999999998766221 111222334556666665443
|
| >4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-10 Score=111.52 Aligned_cols=135 Identities=14% Similarity=0.190 Sum_probs=90.2
Q ss_pred ccCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcch-----------------------hHHHhc
Q 005624 101 DDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEED-----------------------EYEEKL 157 (687)
Q Consensus 101 ~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~-----------------------~~~~~l 157 (687)
+..+|+++|+|.|.||||+.+|+.|++.+... .+++.+...|...+- ....++
T Consensus 10 ~~~~mkilIvY~S~tGnT~~vA~~Ia~~l~~d----~~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l 85 (171)
T 4ici_A 10 KHSNSKILVAYFSATGTTARAAEKLGAAVGGD----LYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKENI 85 (171)
T ss_dssp ---CCCEEEEECCSSSHHHHHHHHHHHHHTCE----EEECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCTTG
T ss_pred ccCCCCEEEEEECCCChHHHHHHHHHHHhCCC----eEEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccccH
Confidence 35578999999999999999999999998532 123333333321000 001357
Q ss_pred cCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccC-CchHHHHHHHHHHHHHHHHcCCcccccc
Q 005624 158 KKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGN-RQYEHFNKIAKVVDEILANQGAKRLVPV 236 (687)
Q Consensus 158 ~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGd-s~Y~~f~~~ak~ld~~L~~lGa~~l~~~ 236 (687)
..++.+||++||| .|.+|..+..|++.+ .++++++++|+.+. +.+ ..+.+.+.+.|. |++- .+-
T Consensus 86 ~~yD~iilg~Pvy-~g~~~~~~~~fl~~~--------~l~gk~v~~f~t~g~~~~---g~a~~~l~~~l~--~~~~-~~g 150 (171)
T 4ici_A 86 GTYDVVFIGYPIW-WDLAPRIINTFIEGH--------SLKGKTVVPFATSGGSSI---GNSATVLKKTYP--DLNW-KEG 150 (171)
T ss_dssp GGCSEEEEEEECB-TTBCCHHHHHHHHHS--------CCTTSEEEEEEECSSCCS---HHHHHHHHHHST--TSEE-CCC
T ss_pred hHCCEEEEecccc-cCCchHHHHHHHHHc--------CCCcCEEEEEEecCCCCc---chHHHHHHHHcC--CCee-ccC
Confidence 7899999999999 588999888887665 37899999999853 333 456677777764 4443 221
Q ss_pred ccccCCCCcHHhHHHHHHHH
Q 005624 237 GLGDDDQCIEDDFSAWRELV 256 (687)
Q Consensus 237 g~gD~~~~~e~~f~~W~~~l 256 (687)
.... ...++++..|.+++
T Consensus 151 ~~~~--~~~~~~i~~Wl~~~ 168 (171)
T 4ici_A 151 RLLN--RTDEKAIRAWLDVI 168 (171)
T ss_dssp EECS--SCCHHHHHHHHHHH
T ss_pred eEec--CCCHHHHHHHHHHh
Confidence 1111 13578899998775
|
| >2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-10 Score=112.55 Aligned_cols=126 Identities=12% Similarity=0.008 Sum_probs=97.2
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCC-------------C--CcchhHHHhccCCCeEEEEe
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-------------A--DEEDEYEEKLKKENIVFFFL 167 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-------------~--~~~~~~~~~l~~~~~vi~~~ 167 (687)
.||+|+|+|+| +|||+.+|+.+++.+.+.+ ..++++|+.+. + .+..+ .+++..++.+||++
T Consensus 3 ~mmkilii~~S-~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~-~~~l~~aD~ii~gs 78 (199)
T 2zki_A 3 CKPNILVLFYG-YGSIVELAKEIGKGAEEAG--AEVKIRRVRETLPPEFQSRIPFDKVKDIPEVT-LDDMRWADGFAIGS 78 (199)
T ss_dssp CCCEEEEEECC-SSHHHHHHHHHHHHHHHHS--CEEEEEECCCCSCGGGGTTCCGGGSTTSCBCC-HHHHHHCSEEEEEE
T ss_pred CCcEEEEEEeC-ccHHHHHHHHHHHHHHhCC--CEEEEEehhHhCChhhhhccCCCccccccccc-HHHHHhCCEEEEEC
Confidence 36799999999 9999999999999998765 56788888775 0 00011 35678899999999
Q ss_pred eCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 168 ATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 168 sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
||| .|.+|..++.|++++...- ....++++++++|+.+...+.....+...+.+.|..+|+..+.
T Consensus 79 P~y-~~~~~~~lk~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~ 143 (199)
T 2zki_A 79 PTR-YGNMAGGLKTFLDTTAILW-KDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVP 143 (199)
T ss_dssp ECB-TTBCCHHHHHHHHTTHHHH-HTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECC
T ss_pred Ccc-ccCccHHHHHHHHHhhhcc-cccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeC
Confidence 999 6999999999999875321 0124889999999987665433356778888999999987654
|
| >3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=113.32 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=94.4
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCC-CCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHH
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~ 181 (687)
.+++|+|+|+|.||||+.+|+.|++.+.+. .+++.++ +..+ ...+++.+++.+||++||| .|.+|..++.
T Consensus 5 ~~~kiliiy~S~~GnT~~lA~~ia~~l~~~-------~~~v~~~~~~~~-~~~~~l~~~D~ii~gsP~y-~g~~~~~~k~ 75 (193)
T 3d7n_A 5 SSSNTVVVYHSGYGHTHRMAEAVAEGAEAT-------LHAIDAEGNLSE-DGWAALDAADAIIFGTPTY-MGGPSWQFKK 75 (193)
T ss_dssp -CCCEEEEECCSSSHHHHHHHHHHHHHTCE-------EEECCTTSCCCH-HHHHHHHHCSEEEEEEEEE-TTEECHHHHH
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHhhhc-------ceEeeecCCCCH-hHHHHHHHCCEEEEEeCcc-CCCccHHHHH
Confidence 468899999999999999999999999753 2344443 1111 1235688899999999999 6999999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
|++++...- ....++++++++|+.+...+..+..+...+...|..+|...+
T Consensus 76 fld~~~~~~-~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~v 126 (193)
T 3d7n_A 76 FADASSKPW-FSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWV 126 (193)
T ss_dssp HHHHTHHHH-HTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHhhhhc-cccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEe
Confidence 999886310 012488999999999987776677888999999999988743
|
| >1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=115.37 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=100.0
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCC--------------------CCcchhHHHhccCCCe
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY--------------------ADEEDEYEEKLKKENI 162 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~--------------------~~~~~~~~~~l~~~~~ 162 (687)
.||+|+|+|+|.+|||+.+|+.|++.+.+.+ ..++++|+.+. +.. ....+++..++.
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~l~~aD~ 81 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAG--AEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVP-EATPADLEWAEA 81 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSC-BCCHHHHHHCSE
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhcCC--CEEEEEeccccccchhhhcccccccccccccchh-HHHHHHHHHCCE
Confidence 4689999999999999999999999998764 56788888775 210 112456788999
Q ss_pred EEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005624 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 163 vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
+||++|+| .|.+|..++.|++++...- ....++++++++|+.+...+..+..+...+...|..+|+..+.+
T Consensus 82 ii~gsP~y-~~~~~~~lk~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~ 152 (211)
T 1ydg_A 82 IVFSSPTR-FGGATSQMRAFIDTLGGLW-SSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPP 152 (211)
T ss_dssp EEEEEEEE-TTEECHHHHHHHHTTHHHH-HTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCC
T ss_pred EEEEcCcc-ccCccHHHHHHHHHhcccc-ccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCC
Confidence 99999999 6999999999999875321 01248899999999876665334677788899999999876543
|
| >2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.7e-10 Score=111.30 Aligned_cols=122 Identities=11% Similarity=0.079 Sum_probs=95.7
Q ss_pred CceEEEEEecC--cchHHHHHHHHHHH-HHhhcCCCeeEEecCCCCCC-----------cchhHHHhccCCCeEEEEeeC
Q 005624 104 KQKVTIFFGTQ--TGTAEGFAKALADE-ARARYDKAIFKVVDIDDYAD-----------EEDEYEEKLKKENIVFFFLAT 169 (687)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~-l~~~~~~~~v~v~dl~~~~~-----------~~~~~~~~l~~~~~vi~~~sT 169 (687)
||+|+|+|||. +|+|+.+|+.+++. +.+.+ ..++++|+.++.. +-..+.+.+...+.+||++|+
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g--~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~ 79 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSD--SQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPI 79 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSS--EEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEEC
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCC--CeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCc
Confidence 57999999997 89999999999999 88764 5678889887643 111233567889999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
| .|..|...+.|++|+.. ..++++++++|+.|... .+++.....+...|..+|++.+.
T Consensus 80 y-~~~~p~~lK~~ld~l~~-----~~~~gK~~~~~~tgg~~-~~~~a~~~~l~~~l~~~g~~~v~ 137 (197)
T 2vzf_A 80 Y-KASYTGLLKAFLDILPQ-----FALAGKAALPLATGGSP-AHVLALDYGLRPVLHSMGVRHVV 137 (197)
T ss_dssp B-TTBCCHHHHHHHTTSCT-----TTTTTCEEEEEEEESSG-GGGGHHHHTHHHHHHTTTCSEEC
T ss_pred c-CCCCCHHHHHHHHhccc-----cccCCCEEEEEEECCCc-chhhHHHHHHHHHHHHcCCEecc
Confidence 9 78899999999999853 25899999999997654 23332324688899999998664
|
| >1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.8e-09 Score=102.84 Aligned_cols=158 Identities=11% Similarity=0.050 Sum_probs=115.0
Q ss_pred CceEEEEEecCc---chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc---------------------------chhH
Q 005624 104 KQKVTIFFGTQT---GTAEGFAKALADEARARYDKAIFKVVDIDDYADE---------------------------EDEY 153 (687)
Q Consensus 104 ~~~v~I~YgSqt---Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------------------------~~~~ 153 (687)
||+|+|+|||.+ |+|+.+|+.+++.+.+.++...++++|+.+++.. ...+
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDEL 80 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 579999999998 9999999999999998765566889998775421 0123
Q ss_pred HHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcC--------CCCCcCCceEEEEeccCCchHH--HHHHHHHHHH
Q 005624 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE--------GGEWLQKLKYGVFGLGNRQYEH--FNKIAKVVDE 223 (687)
Q Consensus 154 ~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~Y~~--f~~~ak~ld~ 223 (687)
.+.+...+.+||++|+| .|.+|...+.|++++..... +...++++++++|+.+...|.. |+.+...+..
T Consensus 81 ~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~ 159 (201)
T 1t5b_A 81 IAELKAHDVIVIAAPMY-NFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKV 159 (201)
T ss_dssp HHHHHHCSEEEEECCCB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHH
T ss_pred HHHHHhCCEEEEEeCcc-cCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHH
Confidence 45688899999999999 88999999999999863100 0124889999999976655532 5556777888
Q ss_pred HHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhh
Q 005624 224 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 263 (687)
Q Consensus 224 ~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (687)
.|..+|++.+..+.....+. .++..++|.++..+.+.++
T Consensus 160 ~l~~~G~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~~ 198 (201)
T 1t5b_A 160 FLGFIGITDVNFVFAEGIAY-GPEVAAKAQADAKAAIDSV 198 (201)
T ss_dssp HHHHTTCCCEEEEEECCGGG-CHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCcceeEEEEEecccC-ChHHHHHHHHHHHHHHHHH
Confidence 99999998764433322222 3455578877766655543
|
| >3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=102.31 Aligned_cols=127 Identities=9% Similarity=0.158 Sum_probs=84.4
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCC-CCCCcc--------------------hhHHHhccCCCe
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDID-DYADEE--------------------DEYEEKLKKENI 162 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~-~~~~~~--------------------~~~~~~l~~~~~ 162 (687)
+++++|+|.|.||||+++|+.|++.+.... .+++...+ .|+.+. .....++..++.
T Consensus 3 ~~kilIvY~S~tGnT~~iA~~Ia~~l~~~~---~~~i~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~~d~ 79 (151)
T 3edo_A 3 AKKTLILYYSWSGETKKMAEKINSEIKDSE---LKEVKVSEGTFDADXYKTSDIALDQIQGNKDFPEIQLDNIDYNNYDL 79 (151)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHSTTCE---EEECBCCTTSSCSSHHHHHHHHHHHHTTSSCCCCCBCCCCCGGGCSE
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHhccCCC---EEEEEcCCCCCCchhhhhhHHHHHHHhcccCCcccchhhhCHhhCCE
Confidence 468999999999999999999999884321 01211111 122100 001235678999
Q ss_pred EEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCC
Q 005624 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDD 242 (687)
Q Consensus 163 vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~ 242 (687)
+||++||| .|.+|..+..|++.+. .+.++.+++|+.|...+. .+.+.+.+.+. ++.-+ + |+.
T Consensus 80 iilG~P~~-~g~~~~~~~~fl~~~~-------~~~~k~~~~~t~gg~~~g---~~~~~l~~~~~--~~~~~-~-g~~--- 141 (151)
T 3edo_A 80 ILIGSPVW-SGYPATPIKTLLDQMK-------NYRGEVASFFTSAGTNHK---AYVSHFNEWAD--GLNVI-G-VAR--- 141 (151)
T ss_dssp EEEEEEEE-TTEECTHHHHHHHHTT-------TCCSEEEEEEECSSCCHH---HHHHHHHHHTT--TSEEE-E-EEE---
T ss_pred EEEEccee-cccccHHHHHHHHhch-------hcCCEEEEEEEeCCCCCC---cHHHHHHHHcC--CCeee-c-ccc---
Confidence 99999999 6999999999998764 367889999999987753 34566666653 44422 2 111
Q ss_pred CCcHHhHHHHH
Q 005624 243 QCIEDDFSAWR 253 (687)
Q Consensus 243 ~~~e~~f~~W~ 253 (687)
.+.++.+|.
T Consensus 142 --~~~~~~~w~ 150 (151)
T 3edo_A 142 --DDSEVDKWS 150 (151)
T ss_dssp --TTTTHHHHH
T ss_pred --cHHHHHHHh
Confidence 124688885
|
| >1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=5.9e-08 Score=98.53 Aligned_cols=152 Identities=11% Similarity=0.108 Sum_probs=109.7
Q ss_pred CceEEEEEecCc--chHHHHHHHHHHHHHhh-cCCCeeEEecCCCCCC----------------------cchhHHHhcc
Q 005624 104 KQKVTIFFGTQT--GTAEGFAKALADEARAR-YDKAIFKVVDIDDYAD----------------------EEDEYEEKLK 158 (687)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~-~~~~~v~v~dl~~~~~----------------------~~~~~~~~l~ 158 (687)
||+|+|+|||.. |+|+.+|+.+++.+.+. + ..++++|+.+++. +-.+..+++.
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~g--~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~ 78 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNN--VDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELL 78 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSC--CEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhcC--CeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHH
Confidence 579999999986 99999999999999876 4 5678888876532 1122345678
Q ss_pred CCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccc
Q 005624 159 KENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGL 238 (687)
Q Consensus 159 ~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~ 238 (687)
..+.+||++|+| .|.+|...+.|++++.... ....+.++++++|+.+... ....+...+...|..+|+..+.++..
T Consensus 79 ~AD~iI~~sP~y-~~~~p~~lK~~iDr~~~~~-~~~~l~gK~~~~i~t~g~~--g~~~~~~~l~~~l~~~G~~~v~~~~~ 154 (242)
T 1sqs_A 79 ESDIIIISSPVY-LQNVSVDTKNFIERIGGWS-HLFRLAGKFVVTLDVAESN--GSDNVSEYLRDIFSYMGGQILHQVSI 154 (242)
T ss_dssp HCSEEEEEEEEC-SSSCCHHHHHHHHHTGGGT-TTTTTTTCEEEEEEEESSC--CSCCHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HCCEEEEEcccc-ccCCCHHHHHHHHHHHHhc-cccccCCCEEEEEEeCCCC--chhhHHHHHHHHHHHCCCeeeeEEEE
Confidence 899999999999 8999999999999985321 2235889999999764322 11245677888898899987655433
Q ss_pred ccC-CCCcHHhHHHHHHHHHHHHH
Q 005624 239 GDD-DQCIEDDFSAWRELVWPELD 261 (687)
Q Consensus 239 gD~-~~~~e~~f~~W~~~l~~~L~ 261 (687)
.+. .....+.+.++.+.|...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~la~~i~ 178 (242)
T 1sqs_A 155 TNSLKDIAEAQLMEATYKIEDVLE 178 (242)
T ss_dssp EGGGGGGHHHHHHHHHHHHHHHHT
T ss_pred eccCChHHHHHHHHHHHHHHHHHh
Confidence 221 12345567777777666554
|
| >1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.8e-08 Score=95.56 Aligned_cols=125 Identities=10% Similarity=0.123 Sum_probs=95.0
Q ss_pred CCceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC------------cchhHHHhccCCCeEEEEee
Q 005624 103 GKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD------------EEDEYEEKLKKENIVFFFLA 168 (687)
Q Consensus 103 ~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~------------~~~~~~~~l~~~~~vi~~~s 168 (687)
.+|+|+|+|||.. |+|+.+|+.+++.+. .+ ..++++|+.++.. +-....+++...+.+||++|
T Consensus 5 ~~Mkilii~gS~r~~g~t~~la~~i~~~l~-~g--~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP 81 (193)
T 1rtt_A 5 DDIKVLGISGSLRSGSYNSAALQEAIGLVP-PG--MSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATP 81 (193)
T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHTTCC-TT--CEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECC
T ss_pred CCceEEEEECCCCCCChHHHHHHHHHHhcc-CC--CeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcc
Confidence 3478999999985 999999999999886 33 5678888877432 11123456888999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
+| .|.+|...+.|++++..... ..++++++++|+.+...+. ...+...+...|..+|++.+.
T Consensus 82 ~y-~~~~p~~lK~~iD~~~~~~~--~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~~~ 143 (193)
T 1rtt_A 82 EY-NYSMAGVLKNAIDWASRPPE--QPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHPLN 143 (193)
T ss_dssp EE-TTEECHHHHHHHHHHTCSSS--CTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEECC
T ss_pred cc-ccCcCHHHHHHHHHhccccC--cccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEEcC
Confidence 99 78899999999999974211 3489999999998744432 235668888899889998765
|
| >1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4 | Back alignment and structure |
|---|
Probab=98.71 E-value=8.6e-08 Score=93.42 Aligned_cols=121 Identities=15% Similarity=0.128 Sum_probs=94.6
Q ss_pred ceEEEEEecCc--chHHHHHHHHHHHHHhhc----CCCeeEEecCCCCCC----------------------c-chhHHH
Q 005624 105 QKVTIFFGTQT--GTAEGFAKALADEARARY----DKAIFKVVDIDDYAD----------------------E-EDEYEE 155 (687)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~----~~~~v~v~dl~~~~~----------------------~-~~~~~~ 155 (687)
|+|+|+|||.. |+|+.+|+.+++.+.+.+ ++..++++|+.+++. + ...+.+
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR 80 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHH
Confidence 58999999998 999999999999998753 235678888765321 0 012346
Q ss_pred hccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005624 156 KLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 156 ~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
.+...+.+||++|+| .|.+|...+.|++++.. .++++++++|+.|...- ..+...+...|..+|++.+..
T Consensus 81 ~l~~aD~iI~~sP~y-~~~~p~~lK~~iD~~~~------~l~gK~~~~~~~G~~~~---~~~~~~l~~~l~~~G~~~~~~ 150 (191)
T 1t0i_A 81 IVNALDIIVFVTPQY-NWGYPAALKNAIDRLYH------EWHGKPALVVSYGGHGG---SKCNDQLQEVLHGLKMNVIGG 150 (191)
T ss_dssp HHHTCSEEEEEEECB-TTBCCHHHHHHHHTCST------TTTTCEEEEEEEETTTT---HHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhCCEEEEEeceE-CCCCCHHHHHHHHHHHh------hcCCCEEEEEEeCCcch---hhHHHHHHHHHHHCCCEEcce
Confidence 788999999999999 78999999999988853 48899999999887532 346678888999999986543
|
| >3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.2e-08 Score=93.74 Aligned_cols=115 Identities=10% Similarity=0.191 Sum_probs=87.0
Q ss_pred ceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC-----c--------chhHHHhccCCCeEEEEeeC
Q 005624 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-----E--------EDEYEEKLKKENIVFFFLAT 169 (687)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-----~--------~~~~~~~l~~~~~vi~~~sT 169 (687)
|+|+|+|||.+ |+|+.+|+.+++.+.. +++|+.+++. + -.++.+.+...+.+||++|+
T Consensus 1 Mkilii~gS~~~~g~t~~la~~i~~~l~~-------~~i~l~~~~lp~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~tP~ 73 (174)
T 3gfs_A 1 MNMLVINGTPRKHGRTRIAASYIAALYHT-------DLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPE 73 (174)
T ss_dssp --CEEEECCCCTTCHHHHHHHHHHHHTTC-------EEEETTTSCCCCCCCCHHHHTCHHHHHHHHHHHHCSSEEEEEEC
T ss_pred CEEEEEECCCCCCCcHHHHHHHHHHhCcc-------eEEeeecCCCCCCCChhhccCcHHHHHHHHHHHHCCEEEEEcCC
Confidence 57999999998 9999999999998753 3455544432 1 11233467889999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
| .|.+|...+.|++|+... .++++++++|+. |... .+..+...+.+.|..+|+..+-
T Consensus 74 y-~~~~p~~lk~~lD~l~~~-----~~~gK~~~~~~~sgg~~--g~~~a~~~l~~~l~~~g~~~v~ 131 (174)
T 3gfs_A 74 Y-HSGMSGALKNALDFLSSE-----QFKYKPVALLAVAGGGD--GGINALNNMRTVMRGVYANVIP 131 (174)
T ss_dssp S-SSSCCHHHHHHHHTCCHH-----HHTTCEEEEEEECCSTT--CSHHHHHHHHHHHHHTTCEEEE
T ss_pred c-CCCCCHHHHHHHHHhCHh-----hhCCCcEEEEEECCCCh--hHHHHHHHHHHHHHHcCCEEec
Confidence 9 999999999999998642 488999999984 4321 2356678899999999998553
|
| >2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.5e-07 Score=90.32 Aligned_cols=157 Identities=9% Similarity=0.032 Sum_probs=108.1
Q ss_pred CceEEEEEecCc----chHHHHHHHHHHHHHhhcCCCeeEEecCC--CCCCcc---------------------------
Q 005624 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDID--DYADEE--------------------------- 150 (687)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~--~~~~~~--------------------------- 150 (687)
||+|+|+|||.. |+|+.+|+.+.+.+++.++...++++|+. +.....
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQ 80 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHH
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHh
Confidence 578999999987 99999999999999988755678889887 644210
Q ss_pred -----hhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhc--------CCCCCcCCceEEEEeccCCchHHHHHH
Q 005624 151 -----DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK--------EGGEWLQKLKYGVFGLGNRQYEHFNKI 217 (687)
Q Consensus 151 -----~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~--------~~~~~l~~~~~aVFGlGds~Y~~f~~~ 217 (687)
.++.+++...+.+||++|+| .|.+|...+.|++++.... .+...++++++.+|......|.+-..+
T Consensus 81 ~~~~~~~~~~~l~~aD~iv~~~P~y-~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~ 159 (208)
T 2hpv_A 81 KVARFNELTDQFLSADKVVIANPMW-NLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFA 159 (208)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHH
T ss_pred hHHHHHHHHHHHHhCCEEEEEeccc-cCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchH
Confidence 11234678889999999999 9999999999999986411 011247899999986533334210234
Q ss_pred HHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHh
Q 005624 218 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (687)
Q Consensus 218 ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (687)
...+...|.-+|.+.+-.+.....+. .++..++|.++....+.+
T Consensus 160 ~~~l~~~~~~~G~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~ 203 (208)
T 2hpv_A 160 SQYIKAILNFIGVDQVDGLFIEGIDH-FPDRAEELLNTAMTKATE 203 (208)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTT-CGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeEEEEccccC-CHHHHHHHHHHHHHHHHH
Confidence 45667778889998665443332222 235567777665554443
|
| >2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-06 Score=89.01 Aligned_cols=128 Identities=12% Similarity=0.036 Sum_probs=97.9
Q ss_pred ccCCceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc---------chhHHHhccCCCeEEEEeeC
Q 005624 101 DDGKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYADE---------EDEYEEKLKKENIVFFFLAT 169 (687)
Q Consensus 101 ~~~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------~~~~~~~l~~~~~vi~~~sT 169 (687)
...+++|+|+|||.. |+++.+|+.+++.+.+.+ ..++++|+.+++.. -.++.+.+...+.+||++|+
T Consensus 31 ~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g--~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~ 108 (247)
T 2q62_A 31 STHRPRILILYGSLRTVSYSRLLAEEARRLLEFFG--AEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPE 108 (247)
T ss_dssp CCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTT--CEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEEC
T ss_pred cCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCC--CEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCC
Confidence 345789999999985 999999999999998754 56788999876521 12345678889999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
| +|.+|...+.|++|+.........+++++.++++.+-.. ... .+...+...|..+|+..+
T Consensus 109 Y-n~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-gg~-~a~~~Lr~~l~~lg~~~v 169 (247)
T 2q62_A 109 R-HGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-QSF-NAVNQMRILGRWMRMITI 169 (247)
T ss_dssp S-SSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEEC
T ss_pred C-CCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-cHH-HHHHHHHHHHHHCCCEEe
Confidence 9 999999999999999642111135899999999984322 111 355788888888998855
|
| >1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-06 Score=84.61 Aligned_cols=125 Identities=12% Similarity=0.110 Sum_probs=85.9
Q ss_pred CCceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC------------------cchhHHHhccCCCe
Q 005624 103 GKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD------------------EEDEYEEKLKKENI 162 (687)
Q Consensus 103 ~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~------------------~~~~~~~~l~~~~~ 162 (687)
+||+|+|+|||.. |+|+.+|+.+++.+ .++++|+.+++. +..+..+++...+.
T Consensus 2 ~mMkilii~~S~r~~g~t~~la~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ 74 (184)
T 1rli_A 2 NAMKIAVINGGTRSGGNTDVLAEKAVQGF-------DAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHI 74 (184)
T ss_dssp ---CEEEEESSCSSCCHHHHHHHHHHTTT-------CCEEEEC-----------------------CHHHHHHHHHTCSE
T ss_pred CCcEEEEEECCCCCCccHHHHHHHHHcCC-------eEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCE
Confidence 3579999999964 99999999998755 235555554422 11223457889999
Q ss_pred EEEEeeCCCCCCCCchHHHHHHHHHhhcCCC------CCcCCceEEEEeccCCchH-HHHHHHHHHHHHHHHcCCccccc
Q 005624 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGG------EWLQKLKYGVFGLGNRQYE-HFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 163 vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~------~~l~~~~~aVFGlGds~Y~-~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
+||++|+| .|.+|...+.|++++....... ..++++++++|+.+..... .+..+.+.+...|..+|.+.+..
T Consensus 75 ii~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~G~~~~~~ 153 (184)
T 1rli_A 75 LIFATPIY-WFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFKGY 153 (184)
T ss_dssp EEEEEECB-TTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEeCcc-ccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHcCCccceE
Confidence 99999999 8999999999999886421100 1478999999988654321 23445678888888899886643
|
| >2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4 | Back alignment and structure |
|---|
Probab=98.35 E-value=2.9e-06 Score=87.74 Aligned_cols=127 Identities=9% Similarity=-0.000 Sum_probs=97.0
Q ss_pred cCCceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc----------chhHHHhccCCCeEEEEeeC
Q 005624 102 DGKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYADE----------EDEYEEKLKKENIVFFFLAT 169 (687)
Q Consensus 102 ~~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~----------~~~~~~~l~~~~~vi~~~sT 169 (687)
..+++|+|+|||.. |+++.+|+.+++.+.+.+ ..++++|+.+++.. -.++.+.+...+.+||++|+
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G--~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~ 133 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFG--AETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPE 133 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTT--CEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEE
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCC--CEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCc
Confidence 45789999999986 999999999999998754 56888998876521 12234567888999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
| +|.+|...+.|++|+.........+++++.++++.+-.. ..+ .+...+...|..+|+..+
T Consensus 134 Y-n~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~-gg~-~a~~~Lr~~l~~lg~~vv 194 (279)
T 2fzv_A 134 R-HGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGS-QSF-NAVNTLRLLGRWMRMFTI 194 (279)
T ss_dssp E-TTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEEC
T ss_pred c-ccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCc-cHH-HHHHHHHHHHHhcCcEEe
Confidence 9 999999999999999642111235899999999984322 112 345678888888898855
|
| >3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.9e-06 Score=81.38 Aligned_cols=126 Identities=12% Similarity=0.153 Sum_probs=94.7
Q ss_pred CceEEEEEecC--cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc-----------chhHHHhccCCCeEEEEeeCC
Q 005624 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------EDEYEEKLKKENIVFFFLATY 170 (687)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------~~~~~~~l~~~~~vi~~~sTy 170 (687)
|++|+|++||. .|+++.+|+.+.+.+. . +..++++|+.++..- -.++.+.+...+.+||++|+|
T Consensus 2 M~kilii~gS~r~~s~t~~la~~~~~~~~-~--~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y 78 (192)
T 3fvw_A 2 SKRILFIVGSFSEGSFNRQLAKKAETIIG-D--RAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVY 78 (192)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHHHHT-T--SSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCB
T ss_pred CCEEEEEEcCCCCCCHHHHHHHHHHHhcC-C--CCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECccc
Confidence 57999999998 6999999999999886 3 356788888765321 123456788999999999999
Q ss_pred CCCCCCchHHHHHHHHHhhcC-----CCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005624 171 GDGEPTDNAARFYKWFTEQKE-----GGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (687)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~-----~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~ 235 (687)
.|..|.-.+.|++|+..... ....|+|+++++++.+... .+..+...+...|..+|++.+-.
T Consensus 79 -~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~--g~~~~~~~l~~~l~~~G~~~v~~ 145 (192)
T 3fvw_A 79 -NYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA--SPEEVFEDYRSLLPFIRMHLVDQ 145 (192)
T ss_dssp -TTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEECCC
T ss_pred -ccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc--chhHHHHHHHHHHHHcCCeeecc
Confidence 99999999999999975210 1135899999999886552 22334577888888899986543
|
| >3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.6e-05 Score=79.31 Aligned_cols=157 Identities=13% Similarity=0.037 Sum_probs=111.6
Q ss_pred cCCceEEEEEecC------cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCC
Q 005624 102 DGKQKVTIFFGTQ------TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEP 175 (687)
Q Consensus 102 ~~~~~v~I~YgSq------tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~ 175 (687)
..||+|+|++||. .+.+..+++.+.+.+.+.+ ..++++|+++ ..|-....+.+...+.+||++|.| .+..
T Consensus 23 ~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g--~ev~~~dL~~-~~Dv~~~~~~l~~aD~iv~~~P~y-~~~~ 98 (218)
T 3rpe_A 23 NAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESG--HQVKITTVDQ-GYDIESEIENYLWADTIIYQMPAW-WMGE 98 (218)
T ss_dssp -CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTT--CCEEEEEGGG-CCCHHHHHHHHHHCSEEEEEEECB-TTBC
T ss_pred ccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCC--CEEEEEECCC-ccCHHHHHHHHHhCCEEEEECChH-hccC
Confidence 4578999999997 3688999999999998765 4578888875 222233456788999999999999 9999
Q ss_pred CchHHHHHHHHHhhc-------------------CCCCCcCCceEEEEeccCCchHHHH-------H-----HHHHHHHH
Q 005624 176 TDNAARFYKWFTEQK-------------------EGGEWLQKLKYGVFGLGNRQYEHFN-------K-----IAKVVDEI 224 (687)
Q Consensus 176 pdna~~F~~~L~~~~-------------------~~~~~l~~~~~aVFGlGds~Y~~f~-------~-----~ak~ld~~ 224 (687)
|.-.+.|++++.... .+...|+|+++.|+-..+...+.|. . .-.-+...
T Consensus 99 p~~lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~~~g~~~~g~~~~~~l~p~~~~ 178 (218)
T 3rpe_A 99 PWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVGVDGVYLPFHKA 178 (218)
T ss_dssp CHHHHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHHCTTSTTTTCHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhcccccccccCCHHHHHHHHHHH
Confidence 999999999885431 0123589999887765444433332 2 11224566
Q ss_pred HHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhhh
Q 005624 225 LANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 225 L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (687)
|.-+|.+.+-+....+... ++++++|.+++...|.+++
T Consensus 179 l~f~G~~~l~~~~~~g~~~--~~~~~~~~~~~~~~L~~~~ 216 (218)
T 3rpe_A 179 NQFLGMKPLPTFMCNDVIK--QPDIEGDIARYRQHLAENV 216 (218)
T ss_dssp HHHTTCEECCCEEECSTTT--SCCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCEEeceEEEeCCCC--hHHHHHHHHHHHHHHHHhc
Confidence 7778998777766655433 4578888888877777665
|
| >3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=7.4e-06 Score=81.20 Aligned_cols=158 Identities=10% Similarity=0.076 Sum_probs=108.7
Q ss_pred CceEEEEEecCcc---hHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC---------------c-------------chh
Q 005624 104 KQKVTIFFGTQTG---TAEGFAKALADEARARYDKAIFKVVDIDDYAD---------------E-------------EDE 152 (687)
Q Consensus 104 ~~~v~I~YgSqtG---tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---------------~-------------~~~ 152 (687)
||+|+|++||..+ +|..+|+.+.+.+++.+++..++++|+.+.+. . ..+
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQ 80 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHH
Confidence 6899999999765 69999999999998875446688888865431 0 112
Q ss_pred HHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhc-------CC-----CCCcCCceEEEEec-cC-CchH-----H
Q 005624 153 YEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK-------EG-----GEWLQKLKYGVFGL-GN-RQYE-----H 213 (687)
Q Consensus 153 ~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~-------~~-----~~~l~~~~~aVFGl-Gd-s~Y~-----~ 213 (687)
+.+++...+.+||++|+| .+.+|.-.+.|++++.... .. ...|+|+++.++.. |. ..|. .
T Consensus 81 ~~~~l~~AD~iV~~~P~y-~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~ 159 (212)
T 3r6w_A 81 LVGELFDSDLLVISTPMY-NFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQA 159 (212)
T ss_dssp HHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGG
T ss_pred HHHHHHhCCEEEEEcCcc-cccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCc
Confidence 335678899999999999 9999999999999994310 11 22588999888765 42 2231 1
Q ss_pred HHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhh
Q 005624 214 FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 263 (687)
Q Consensus 214 f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (687)
+......+...|.-+|.+.+-.+.....+. .+++.++|.++....+.++
T Consensus 160 ~~~~~~~l~~~l~~~G~~~~~~v~~~g~~~-~~~~~~~~l~~a~~~~~~l 208 (212)
T 3r6w_A 160 MNHADPWLRTALGFIGIDEVTVVAAEGEES-GGRSFEDSCDEAEQRLLAL 208 (212)
T ss_dssp GCCSHHHHHHHHHHHTCCEEEEEEECCTTT-CHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHCCCceeEEEEEecccC-CHHHHHHHHHHHHHHHHHH
Confidence 233445667777788998764443322222 4567778877766655543
|
| >3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A | Back alignment and structure |
|---|
Probab=98.26 E-value=4.5e-06 Score=81.76 Aligned_cols=125 Identities=9% Similarity=0.125 Sum_probs=94.8
Q ss_pred cCCceEEEEEecCc--chHHHHHHHHHH----HHHhhcCCCeeEEecCCCCCC------------c-chhHHHhccCCCe
Q 005624 102 DGKQKVTIFFGTQT--GTAEGFAKALAD----EARARYDKAIFKVVDIDDYAD------------E-EDEYEEKLKKENI 162 (687)
Q Consensus 102 ~~~~~v~I~YgSqt--Gtae~~A~~la~----~l~~~~~~~~v~v~dl~~~~~------------~-~~~~~~~l~~~~~ 162 (687)
..|.+|+++.||.. |++..+|+.+.+ .+++++.+..++++|+.+++. + -.++.+++...+.
T Consensus 9 ~~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ 88 (191)
T 3k1y_A 9 SHMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDG 88 (191)
T ss_dssp CCSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSE
T ss_pred hhhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCE
Confidence 46889999999975 889999999999 666664446778888876542 1 1134567888999
Q ss_pred EEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 163 vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
+||++|+| +|.+|.-.+.|++|+.. ..+.+++.++++.|... .+....-..+...|..+|+..+
T Consensus 89 ivi~sP~Y-~~~~~~~lK~~iD~~~~-----~~l~gK~~~~v~t~G~~-~~~~~~~~~L~~il~~lg~~vv 152 (191)
T 3k1y_A 89 LVVATPVF-KASYTGLFKMFFDILDT-----DALTGMPTIIAATAGSA-RHSLVLDYALRPLLSYMRAVVV 152 (191)
T ss_dssp EEEEEECB-TTBSCHHHHHHHHHSCT-----TTTTTCEEEEEEEESSS-TTTTHHHHTHHHHHHHTTCEEC
T ss_pred EEEEcCcc-CCcCcHHHHHHHHHhhh-----hhcCCCEEEEEEeCCCc-chhhHHHHHHHHHHHHCCCEEc
Confidence 99999999 99999999999999964 25899999999987433 2222222337778888999865
|
| >4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.7e-05 Score=78.02 Aligned_cols=124 Identities=10% Similarity=0.100 Sum_probs=93.7
Q ss_pred CceEEEEEec--CcchHHHHHHHHHHHHHhhcCCCeeE-EecCCCCCCc------------chhHHHhccCCCeEEEEee
Q 005624 104 KQKVTIFFGT--QTGTAEGFAKALADEARARYDKAIFK-VVDIDDYADE------------EDEYEEKLKKENIVFFFLA 168 (687)
Q Consensus 104 ~~~v~I~YgS--qtGtae~~A~~la~~l~~~~~~~~v~-v~dl~~~~~~------------~~~~~~~l~~~~~vi~~~s 168 (687)
.++|++++|| ..|+++.+|+.+.+.+.+ +..++ ++|+.+...- -.++.+.+...+.+||++|
T Consensus 6 ~mkIl~I~GS~r~~s~t~~la~~~~~~~~~---g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP 82 (199)
T 4hs4_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAPE---GIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTP 82 (199)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHHHHHCCT---TEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEEC
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHHHccC---CCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcC
Confidence 4789999999 669999999999887742 24577 7787654321 1123456888999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
+| +|..|.-.+.|++|+... ....+.++++++++.+-..+... .+...+...|..+|+..+-
T Consensus 83 ~Y-~~s~p~~LK~~iD~~~~~--~~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~~v~ 144 (199)
T 4hs4_A 83 EY-NYSVPGVLKNAIDWLSRV--SPQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAYVLN 144 (199)
T ss_dssp CB-TTBCCHHHHHHHHHHTTS--SSCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCEECC
T ss_pred cc-CCCcCHHHHHHHHHhccc--CCcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCEEcC
Confidence 99 999999999999999752 23468999999999864444222 2456788888889998663
|
| >3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=9.4e-06 Score=79.63 Aligned_cols=156 Identities=12% Similarity=0.068 Sum_probs=110.1
Q ss_pred ceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC-------------------cchhHHHhccCCCeE
Q 005624 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-------------------EEDEYEEKLKKENIV 163 (687)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-------------------~~~~~~~~l~~~~~v 163 (687)
|+|+|++||-. +++..+|+.+.+.+ +.+ ..++++|+.+... +-..+.+.+...|.+
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~-~~g--~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~i 77 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNL-SKE--HTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHL 77 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHS-CTT--SEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEE
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHh-cCC--CeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEE
Confidence 68999999964 47789999988888 443 5678888865432 112344567889999
Q ss_pred EEEeeCCCCCCCCchHHHHHHHHHhhc------C--CCCCcCCceEEEEeccCCc--hHHH--HHHHHHHHHHHHHcCCc
Q 005624 164 FFFLATYGDGEPTDNAARFYKWFTEQK------E--GGEWLQKLKYGVFGLGNRQ--YEHF--NKIAKVVDEILANQGAK 231 (687)
Q Consensus 164 i~~~sTyG~G~~pdna~~F~~~L~~~~------~--~~~~l~~~~~aVFGlGds~--Y~~f--~~~ak~ld~~L~~lGa~ 231 (687)
||++|.| .+.+|.-.+.|++++.... . +...|+|+++.++..+... |..+ .....-+...|.-+|.+
T Consensus 78 V~~~P~y-~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~~~l~~~G~~ 156 (196)
T 3lcm_A 78 IFIFPIW-WSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKKQILKPCAIS 156 (196)
T ss_dssp EEEEECB-TTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHHHTTGGGTCC
T ss_pred EEECchh-hccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHHHHHHhcCCc
Confidence 9999999 9999999999999985320 0 1125899999988776655 4211 11113445556667988
Q ss_pred cccccccccCCCCcHHhHHHHHHHHHHHHHhhh
Q 005624 232 RLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 232 ~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (687)
.+-.+..+..+...++...+|.+++.....+.+
T Consensus 157 ~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~ 189 (196)
T 3lcm_A 157 PVKLTELTSIEKISDDERQKLLHKVAQITRNIL 189 (196)
T ss_dssp CEEEEEECSTTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred eeeEEEEeCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 776666555555567889999999877776655
|
| >3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.1e-05 Score=76.99 Aligned_cols=158 Identities=11% Similarity=0.041 Sum_probs=105.5
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCC----CcchhHHHhccCCCeEEEEeeCCCCCCCCchH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYA----DEEDEYEEKLKKENIVFFFLATYGDGEPTDNA 179 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~----~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna 179 (687)
||+|+|++||..++...+++.+.+.+++.+ ..++++|+.+.. .+-....+.+...+.+||++|+| .+.+|.-.
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~~g--~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y-~~~~pa~l 77 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQHT--DRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIY-WFNCPPLL 77 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTTCT--TTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECB-TTBCCHHH
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHhCC--CeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChh-hcCCCHHH
Confidence 689999999999876578999999887654 457888875432 22233456789999999999999 99999999
Q ss_pred HHHHHHHHhhc----CCCCCcCCceEEEEeccCCc---hH-------HHHHHHHHHHHHHHHcCCccccccccccCCCC-
Q 005624 180 ARFYKWFTEQK----EGGEWLQKLKYGVFGLGNRQ---YE-------HFNKIAKVVDEILANQGAKRLVPVGLGDDDQC- 244 (687)
Q Consensus 180 ~~F~~~L~~~~----~~~~~l~~~~~aVFGlGds~---Y~-------~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~- 244 (687)
+.|++++.... ..+..|+|+++.++...... |. .+.....-+...|.-+|.+.+-+....+....
T Consensus 78 K~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~~~~~l~pl~~~~~f~G~~~~~~~~~~g~~~~~ 157 (192)
T 3f2v_A 78 KQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELTAKYCNADYRPPFTFHTIDSNA 157 (192)
T ss_dssp HHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSCHHHHHHHHHHHHHHTTCEECCCEEEEC-----
T ss_pred HHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccCHHHHHHHHHHHHHhCCCeEeeeEEEecccccc
Confidence 99999885321 12246899999988765444 31 12233344566777789987766555443321
Q ss_pred -----cHHhHHHHHHHHHHHHHhhh
Q 005624 245 -----IEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 245 -----~e~~f~~W~~~l~~~L~~~~ 264 (687)
.++++++..++....|.++.
T Consensus 158 ~~~~~~~~~~~~~~~~y~~~l~~~~ 182 (192)
T 3f2v_A 158 GYSEAARQEVERSARDYLAWLDALQ 182 (192)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555443
|
| >1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=3.1e-05 Score=80.01 Aligned_cols=158 Identities=13% Similarity=-0.011 Sum_probs=105.4
Q ss_pred CceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC---------------------------------
Q 005624 104 KQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD--------------------------------- 148 (687)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~--------------------------------- 148 (687)
||+|+|+|||.. |++..+|+.+.+.+++.+ ..++++|+.+...
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~g--~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKG--WEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGH 79 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTT--CEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTC
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCC--CeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhccc
Confidence 679999999987 689999999999998754 5678888876542
Q ss_pred --cc-hhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcC--------CCCCcCCceEEEEeccCCc---hHH-
Q 005624 149 --EE-DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE--------GGEWLQKLKYGVFGLGNRQ---YEH- 213 (687)
Q Consensus 149 --~~-~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~---Y~~- 213 (687)
++ ....+.+...+.+||++|.| .+.+|.-.+.|++++..... +...|+|+++.++...... |.+
T Consensus 80 ~~dd~~~~~~~l~~AD~IV~~~P~y-~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~~~~y~~~ 158 (273)
T 1d4a_A 80 LSPDIVAEQKKLEAADLVIFQFPLQ-WFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQ 158 (273)
T ss_dssp BCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTT
T ss_pred CcHHHHHHHHHHHhCCEEEEECchh-hccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCChHHhccc
Confidence 01 11223578889999999999 89999999999999854210 1235889998888764333 421
Q ss_pred -H----HHHHHHHH-HHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhhh
Q 005624 214 -F----NKIAKVVD-EILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 214 -f----~~~ak~ld-~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (687)
. ......+. ..|.-+|.+.+-++..+......++..++|.++....+.++.
T Consensus 159 g~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~ 215 (273)
T 1d4a_A 159 GIHGDMNVILWPIQSGILHFCGFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIW 215 (273)
T ss_dssp BTTCCHHHHHHHHHTTTTGGGTCEECCCEEETTGGGSCHHHHHHHHHHHHHHHTTGG
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCeeeeEEEEeccccCCHHHHHHHHHHHHHHHHHHH
Confidence 1 11222222 244567888665544333332335567777777777776655
|
| >2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=8.9e-05 Score=73.14 Aligned_cols=149 Identities=12% Similarity=0.068 Sum_probs=102.4
Q ss_pred CCceEEEEEecCc------chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCC
Q 005624 103 GKQKVTIFFGTQT------GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT 176 (687)
Q Consensus 103 ~~~~v~I~YgSqt------Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~p 176 (687)
...+|+|+.||-- +++..+|+.+.+.+.+.+ ..++++|+.+- .+.....+.+...|.+||++|.| .+.+|
T Consensus 11 ~~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g--~~v~~~dL~~~-~d~~~~~~~l~~AD~iV~~~P~y-~~s~p 86 (204)
T 2amj_A 11 GSSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLG--HDVRIVRADSD-YDVKAEVQNFLWADVVIWQMPGW-WMGAP 86 (204)
T ss_dssp -CCEEEEEECCC------CHHHHHHHHHHHHHHHHTT--CEEEEEESSSC-CCHHHHHHHHHHCSEEEEEEECB-TTBCC
T ss_pred CCcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcC--CEEEEEeCCcc-ccHHHHHHHHHhCCEEEEECCcc-ccCCC
Confidence 4578999999988 899999999999998764 56788998752 23334557788999999999999 89999
Q ss_pred chHHHHHHHHHhhc-------------------CCCCCcCCceEEEEeccCCchHHHH------------HHHHHHHHHH
Q 005624 177 DNAARFYKWFTEQK-------------------EGGEWLQKLKYGVFGLGNRQYEHFN------------KIAKVVDEIL 225 (687)
Q Consensus 177 dna~~F~~~L~~~~-------------------~~~~~l~~~~~aVFGlGds~Y~~f~------------~~ak~ld~~L 225 (687)
.-.+.|++++.... .+...|+++++.++.........|. .+...+...|
T Consensus 87 a~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~~~~~y~~~g~~~~~~~~~~~l~~l~~~l 166 (204)
T 2amj_A 87 WTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKAN 166 (204)
T ss_dssp HHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSSCTHHHHCTTSSSCSCCHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCCChHHHccCcccccCCCHHHHHHHHHHHH
Confidence 99999999764210 0123589999998877554333331 2223366778
Q ss_pred HHcCCccccccccccCC--CCcHHhHHHHHHH
Q 005624 226 ANQGAKRLVPVGLGDDD--QCIEDDFSAWREL 255 (687)
Q Consensus 226 ~~lGa~~l~~~g~gD~~--~~~e~~f~~W~~~ 255 (687)
.-+|++.+-+....+.+ ...++.++++++.
T Consensus 167 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (204)
T 2amj_A 167 QFLGMEPLPTFIANDVIKMPDVPRYTEEYRKH 198 (204)
T ss_dssp HHTTCEECCCEEECSTTTSCCTTTHHHHHHHH
T ss_pred HHcCCeecceEEEeCCCCcHHHHHHHHHHHHH
Confidence 88899876555443322 2344445555444
|
| >3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.2e-05 Score=76.73 Aligned_cols=158 Identities=11% Similarity=0.108 Sum_probs=109.8
Q ss_pred CceEEEEEecCc----chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc-----------------------------c
Q 005624 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------------------------E 150 (687)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------------------------~ 150 (687)
|++|+|++||-. +++..+|+.+.+.+++.+++..++++||.+.+.. -
T Consensus 4 M~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (211)
T 3p0r_A 4 MTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVA 83 (211)
T ss_dssp CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred cCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHHH
Confidence 679999999955 8899999999999998755567888988654320 0
Q ss_pred hhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhc------C--CCCCcCCceEEEEeccCCchHH-----HHHH
Q 005624 151 DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK------E--GGEWLQKLKYGVFGLGNRQYEH-----FNKI 217 (687)
Q Consensus 151 ~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~------~--~~~~l~~~~~aVFGlGds~Y~~-----f~~~ 217 (687)
.++.+++...+.+||++|.| .+..|.-.+.|++++.... . +...|+++++.++..-...|.. +...
T Consensus 84 ~~~~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~~ 162 (211)
T 3p0r_A 84 DKYLNQFLEADKVVFGFPLW-NLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMA 162 (211)
T ss_dssp HHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCBS
T ss_pred HHHHHHHHhCCEEEEEcChh-cccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhHH
Confidence 12234578889999999999 9999999999999985321 0 1225889998888753333421 2334
Q ss_pred HHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhh
Q 005624 218 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 263 (687)
Q Consensus 218 ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (687)
...+...|.-+|.+.+-.+.....+. ..+.-++|.++....+.++
T Consensus 163 ~~~l~~~l~~~G~~~v~~i~~~g~~~-~~~~~~~~l~~a~~~~~~~ 207 (211)
T 3p0r_A 163 VKYVASMMGFFGATNMETVVIEGHNQ-FPDKAEEIITAGLEEAAKV 207 (211)
T ss_dssp HHHHHHHHHHTTCCSCEEEEEECTTT-SGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeEEEEecccc-CchHHHHHHHHHHHHHHHH
Confidence 45667778888998765544333332 2446778887766655543
|
| >3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii} | Back alignment and structure |
|---|
Probab=97.31 E-value=5.8e-07 Score=88.64 Aligned_cols=125 Identities=10% Similarity=0.091 Sum_probs=92.9
Q ss_pred CCceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEe-cCCCC---CCc---------chhHHHhccCCCeEEEEe
Q 005624 103 GKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVV-DIDDY---ADE---------EDEYEEKLKKENIVFFFL 167 (687)
Q Consensus 103 ~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~-dl~~~---~~~---------~~~~~~~l~~~~~vi~~~ 167 (687)
.+|+|+|+|||.. |+++.+|+.+++.+.+ + ..++++ |+.++ +.+ -..+.+.+...+.+||++
T Consensus 5 ~~mkIliI~gS~r~~s~t~~la~~~~~~~~~-g--~~v~~i~dl~~lp~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~t 81 (199)
T 3s2y_A 5 SPLHFVTLLGSLRKASFNAAVARALPEIAPE-G--IAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVT 81 (199)
Confidence 3578999999986 8999999999998875 3 456777 77652 111 112345678889999999
Q ss_pred eCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005624 168 ATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (687)
Q Consensus 168 sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~ 234 (687)
|+| +|..|...+.|++|+.... ...+.++++++|+.+...+. ...+...+...|..+|+..+.
T Consensus 82 P~Y-~~s~p~~lK~~iD~l~~~~--~~~l~gK~v~~v~tsgg~~g-~~~a~~~Lr~~l~~lg~~~v~ 144 (199)
T 3s2y_A 82 PEY-NYSVPGVLKNAIDWLSRVS--PQPLAGKPVALVTASPGMIG-GARAQYHLRQSLVFLDAYVLN 144 (199)
Confidence 999 8999999999999997531 11589999999996433332 334567788888888988664
|
| >3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ... | Back alignment and structure |
|---|
Probab=97.96 E-value=6e-05 Score=75.78 Aligned_cols=158 Identities=15% Similarity=0.092 Sum_probs=107.9
Q ss_pred ceEEEEEecCcc--hHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC----------------------------------
Q 005624 105 QKVTIFFGTQTG--TAEGFAKALADEARARYDKAIFKVVDIDDYAD---------------------------------- 148 (687)
Q Consensus 105 ~~v~I~YgSqtG--tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---------------------------------- 148 (687)
|+|+|++||-.. ++..+|+.+.+.+++.+ ..++++||.+.+.
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g--~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 79 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQG--CTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSL 79 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHT--CEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCB
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCC--CEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCC
Confidence 789999999764 49999999999998875 5678888866431
Q ss_pred -cc-hhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcC--------CCCCcCCceEEEEeccCCc---hHH--
Q 005624 149 -EE-DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE--------GGEWLQKLKYGVFGLGNRQ---YEH-- 213 (687)
Q Consensus 149 -~~-~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~---Y~~-- 213 (687)
++ ....+.+...+.+||++|.| .+..|.-.+.|++++..... ....|+|+++.++...... |..
T Consensus 80 ~dd~~~~~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~~~~y~~~g 158 (228)
T 3tem_A 80 ASDITDEQKKVREADLVIFQFPLY-WFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTG 158 (228)
T ss_dssp CHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTTTTSTTS
T ss_pred cHHHHHHHHHHHhCCEEEEECChh-hcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCCHHHHhhcc
Confidence 00 01234577889999999999 99999999999999853210 1136899998888654333 421
Q ss_pred HHHHHHH----HHH-HHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhhhC
Q 005624 214 FNKIAKV----VDE-ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLR 265 (687)
Q Consensus 214 f~~~ak~----ld~-~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~ 265 (687)
++...+. +.+ .+.-+|.+.+-+....+.....+++..+|.++....|.++..
T Consensus 159 ~~~~~~~~l~p~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 215 (228)
T 3tem_A 159 VNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWK 215 (228)
T ss_dssp TTCCHHHHHHHHHCCCCCTTTCEECCCEEECCTTTSCHHHHHHHHHHHHHHHHTGGG
T ss_pred ccCCHHHHHHHHHHHHHHhCCceEcCeEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 2221122 111 222357776655555555556678899999998888887653
|
| >3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0003 Score=70.38 Aligned_cols=161 Identities=11% Similarity=0.061 Sum_probs=112.1
Q ss_pred CCceEEEEEecC-----cchHHHHHHHHHHHHHhhcCCC-eeEEecCCCCCCc--c------------------------
Q 005624 103 GKQKVTIFFGTQ-----TGTAEGFAKALADEARARYDKA-IFKVVDIDDYADE--E------------------------ 150 (687)
Q Consensus 103 ~~~~v~I~YgSq-----tGtae~~A~~la~~l~~~~~~~-~v~v~dl~~~~~~--~------------------------ 150 (687)
.||+|+|+.||- .+++..+++.+.+.+++.+++. .++++||.+.+.. +
T Consensus 3 ~MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (223)
T 3u7i_A 3 AMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKVT 82 (223)
T ss_dssp CCCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred ccCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHHH
Confidence 378999999994 5899999999999999876556 7889998654321 0
Q ss_pred ---hhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhc------CCC--CCc-CCceEEEEeccCCch------H
Q 005624 151 ---DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK------EGG--EWL-QKLKYGVFGLGNRQY------E 212 (687)
Q Consensus 151 ---~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~------~~~--~~l-~~~~~aVFGlGds~Y------~ 212 (687)
..+.+.+...+.+||++|.| .+.+|.-.+.|++++.... ..+ ..+ .+++..|+..-...| .
T Consensus 83 d~~~~l~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~ 161 (223)
T 3u7i_A 83 ERMSEILQQFKSANTYVIVLPLH-NFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYT 161 (223)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHH
T ss_pred HHHHHHHHHHHhCCEEEEEcChh-hccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccc
Confidence 12344667889999999999 9999999999999986421 011 235 789988886533333 2
Q ss_pred HHHHHHHHHHHHHHHcCCccccccccccCC-CCcHHhHHHHHHHHHHHHHhhh
Q 005624 213 HFNKIAKVVDEILANQGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 213 ~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~-~~~e~~f~~W~~~l~~~L~~~~ 264 (687)
.+......+...|.-+|.+.+-.+.....+ ...++.++++.+++-...++..
T Consensus 162 ~~~~~~~~l~~~l~~~G~~~~~~i~~~g~~~~~~~~~~~~a~~~~~~~~~~f~ 214 (223)
T 3u7i_A 162 DVEYSHKYLKAMFNFLGIEDYQIVRAQGTAVLDPTEVLQNAYKEVEEAASRLA 214 (223)
T ss_dssp HTCHHHHHHHHHHHHHTCCEEEEEEECCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCceeEEEEEcCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 334455667778888899876543322222 2356778888877665555443
|
| >3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00049 Score=67.11 Aligned_cols=124 Identities=14% Similarity=0.194 Sum_probs=87.5
Q ss_pred CceEEEEEecC--cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCC---cc--------hhHHHhccCCCeEEEEeeCC
Q 005624 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYAD---EE--------DEYEEKLKKENIVFFFLATY 170 (687)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---~~--------~~~~~~l~~~~~vi~~~sTy 170 (687)
+|+|.|+.||. ...++.+|+.+++.+.. +..++++|+.+... +. ..+.+.+...|.+||++|.|
T Consensus 2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~~---~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeY 78 (190)
T 3u7r_A 2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAEG---RLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEY 78 (190)
T ss_dssp CEEEEEEESCCSTTCHHHHHHHHHHHHHTT---TEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCB
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhccC---CCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhh
Confidence 46799999994 45678888888776643 25677888766432 11 11234578889999999999
Q ss_pred CCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 171 GDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
+|..|.-.+.|++|+.... ....+.++.++++|.+-..+... .+...+...|..+|+..+
T Consensus 79 -n~s~pg~LKn~iDwlsr~~-~~~~~~gKpv~~v~~S~G~~Gg~-~a~~~Lr~vl~~lg~~v~ 138 (190)
T 3u7r_A 79 -NRSYPGMIKNAIDWATRPY-GQNSWKGKPAAVIGTSPGVIGAA-LAQARLKNDLLHVGTVMM 138 (190)
T ss_dssp -TTBCCHHHHHHHHHHHCST-TCCTTTTCEEEEEEEESSTTTTH-HHHHHHHHHHHTTTCEEC
T ss_pred -cccCCHHHHHHHHHhcccc-cCCccCCCEEEEEEeCCchhhHH-HHHHHHHHHHHHcCCEEc
Confidence 9999999999999997421 23468999999998643333222 234557777888898754
|
| >3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00025 Score=69.27 Aligned_cols=155 Identities=12% Similarity=0.074 Sum_probs=100.9
Q ss_pred CCceEEEEEecC--cchHHHHHHHHHHHHHhhcCCCeeE-EecCCCCCCc-------------chhHHHhccCCCeEEEE
Q 005624 103 GKQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFK-VVDIDDYADE-------------EDEYEEKLKKENIVFFF 166 (687)
Q Consensus 103 ~~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~-v~dl~~~~~~-------------~~~~~~~l~~~~~vi~~ 166 (687)
.+|+|+++.||- .+++..+|+.+.+.+ .. +..++ ++|+.+...- -.++.+.+...+.+||+
T Consensus 3 ~~mkil~I~GS~r~~s~t~~l~~~~~~~~-~~--g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~ 79 (193)
T 3svl_A 3 EKLQVVTLLGSLRKGSFNGMVARTLPKIA-PA--SMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIV 79 (193)
T ss_dssp -CEEEEEEECCCSTTCHHHHHHHHGGGTS-CT--TEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEE
T ss_pred CCCEEEEEEccCCCCCHHHHHHHHHHHHc-cC--CCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEEE
Confidence 358999999995 578888888776533 22 24566 7787754321 11234567889999999
Q ss_pred eeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc-c-cc------c
Q 005624 167 LATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV-P-VG------L 238 (687)
Q Consensus 167 ~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~-~-~g------~ 238 (687)
+|+| +|..|.-.+.|++|+... ....+.+++.++++..-..+... .+...+...|..+|+..+- | .. .
T Consensus 80 sP~y-~~~~~~~lK~~iD~~~~~--~~~~~~gK~~~~~~~s~g~~gg~-~a~~~Lr~~l~~lg~~v~~~~~~~~~~~~~~ 155 (193)
T 3svl_A 80 TPEY-NYSVPGGLKNAIDWLSRL--PDQPLAGKPVLIQTSSMGVIGGA-RCQYHLRQILVFLDAMVMNKPEFMGGVIQNK 155 (193)
T ss_dssp ECCB-TTBCCHHHHHHHHHHHTS--TTCTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHTTCEECCSSCEEETTGGGG
T ss_pred eccc-CCCCCHHHHHHHHHHhhc--CccccCCCeEEEEEeCCCCcchH-HHHHHHHHHHHHCCCEEcCCCeEeecchhhh
Confidence 9999 999999999999999852 12358999999998622222211 3457788888889998552 1 11 1
Q ss_pred ccCCCC--cHHhHHHHHHHHHHHHHhhh
Q 005624 239 GDDDQC--IEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 239 gD~~~~--~e~~f~~W~~~l~~~L~~~~ 264 (687)
-|++.+ .+++..+..+.+...+....
T Consensus 156 f~~~~g~l~d~~~~~~l~~~~~~~~~~~ 183 (193)
T 3svl_A 156 VDPQTGEVIDQGTLDHLTGQLTAFGEFI 183 (193)
T ss_dssp EETTTTEECCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 122211 23455566666666555544
|
| >3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0002 Score=69.02 Aligned_cols=151 Identities=7% Similarity=-0.017 Sum_probs=102.5
Q ss_pred ceEEEEEecCc---chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHH
Q 005624 105 QKVTIFFGTQT---GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (687)
Q Consensus 105 ~~v~I~YgSqt---Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~ 181 (687)
|+|+|++||-. +.+..+++..+ +.. ..+++.||.+ ..|-....+.+...+.+||.+|.| .+.+|.-.+.
T Consensus 1 MkiLii~ghP~~~~S~~~~~l~~~~----~~~--~~v~v~dL~~-~~D~~~~~~~l~~aD~iV~~~P~y-~~~~pa~lK~ 72 (177)
T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFKAAI----ENF--SNVTWHPLVA-DFNVEQEQSLLLQNDRIILEFPLY-WYSAPALLKQ 72 (177)
T ss_dssp CCEEEEECCTTTTTCSSHHHHHHHH----TTC--TTEEEEECCT-TCCHHHHHHHHHTCSEEEEEEECB-TTBCCHHHHH
T ss_pred CeEEEEEcCCCcccCHHHHHHHHHH----hcC--CCEEEEECCC-cccHHHHHHHHHhCCEEEEECChh-hccCCHHHHH
Confidence 57999999965 44444443333 332 3478999986 434344557889999999999999 8999999999
Q ss_pred HHHHHHhh---cCCCCCcCCceEEEEeccCCchHH----------HHHHHHHHHHHHHHcCCccccccccccCCCCcHHh
Q 005624 182 FYKWFTEQ---KEGGEWLQKLKYGVFGLGNRQYEH----------FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDD 248 (687)
Q Consensus 182 F~~~L~~~---~~~~~~l~~~~~aVFGlGds~Y~~----------f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~ 248 (687)
|++++... -.....|+|+++.++.......+. +....+-+...+.-+|.+-+-+......+...+++
T Consensus 73 ~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~~~~~g~~~~~~~~ 152 (177)
T 3ha2_A 73 WMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPILAVHQFLYLEPDA 152 (177)
T ss_dssp HHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCCEEEESGGGSCHHH
T ss_pred HHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCeEEEeCCCCCCHHH
Confidence 99987431 011236899999888664443222 22344445556777899877666655445556888
Q ss_pred HHHHHHHHHHHHHhh
Q 005624 249 FSAWRELVWPELDNL 263 (687)
Q Consensus 249 f~~W~~~l~~~L~~~ 263 (687)
.++|.++..+.|.+.
T Consensus 153 ~~~~l~~~~~~l~~~ 167 (177)
T 3ha2_A 153 QQRLLVAYQQYATNV 167 (177)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHccc
Confidence 999999887777643
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0012 Score=72.11 Aligned_cols=158 Identities=11% Similarity=0.091 Sum_probs=104.4
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCC----CCCcchhHHHhccCCCeEEEEeeCCCCCCCCch
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDD----YADEEDEYEEKLKKENIVFFFLATYGDGEPTDN 178 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~----~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdn 178 (687)
.+|+|+|++||-.++...+.+.|.+.+.+. ..+++.|+.+ +..+-....+.+...+.+||++|.| .+..|.-
T Consensus 235 ~~mkiLvi~gspr~~ss~~n~~l~~~~~~~---~~v~v~dL~~~~p~~~~d~~~~~~~l~~aD~iv~~~P~y-w~~~Pa~ 310 (413)
T 3l9w_A 235 SSGMILIIYAHPYPHHSHANKRMLEQARTL---EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPL 310 (413)
T ss_dssp --CCEEEEECCSCGGGCSHHHHHHHHHHTS---SSEEEEEHHHHCTTSCCCHHHHHHHHHTCSEEEEEEECB-TTBCCHH
T ss_pred CCCCEEEEEECCCcchHHHHHHHHHHHhcC---CCEEEEEchhhCCCCcHHHHHHHHHHHhCCEEEEECchh-hccCCHH
Confidence 347899999998887666888888888653 3467887732 2333334456789999999999999 9999999
Q ss_pred HHHHHHHHHhhc----CCCCCcCCceEEEEec-cCCc--hH-----HHHHHHHHHHHHHHHcCCccccccccccCCCCcH
Q 005624 179 AARFYKWFTEQK----EGGEWLQKLKYGVFGL-GNRQ--YE-----HFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIE 246 (687)
Q Consensus 179 a~~F~~~L~~~~----~~~~~l~~~~~aVFGl-Gds~--Y~-----~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e 246 (687)
.+.|++++.... ..+..|+|+++.++.. |... |. .|...-.-+...|.-+|.+-+-++.......-.+
T Consensus 311 lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~~~~l~~l~~~~~~~G~~~l~~~~~~g~~~~~d 390 (413)
T 3l9w_A 311 LKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDD 390 (413)
T ss_dssp HHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSGGGGGHHHHHHHHHTTCEECCCEEECCSTTCCH
T ss_pred HHHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCchHHHHHHHHHHHhCCCeecceEEEcCCCCCCH
Confidence 999999885321 1233589999887754 3321 21 1222335566667778998765554433333345
Q ss_pred HhHHHHHHHHHHHHHhhh
Q 005624 247 DDFSAWRELVWPELDNLL 264 (687)
Q Consensus 247 ~~f~~W~~~l~~~L~~~~ 264 (687)
++...+.+.....|..+.
T Consensus 391 ~~~~~~~~~~~~~L~~~~ 408 (413)
T 3l9w_A 391 ETLEGQARHYKQRLLEWQ 408 (413)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666666554
|
| >4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0037 Score=64.57 Aligned_cols=160 Identities=14% Similarity=0.057 Sum_probs=104.3
Q ss_pred cCCceEEEEEec--CcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc------------------------------
Q 005624 102 DGKQKVTIFFGT--QTGTAEGFAKALADEARARYDKAIFKVVDIDDYADE------------------------------ 149 (687)
Q Consensus 102 ~~~~~v~I~YgS--qtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~------------------------------ 149 (687)
...|+|+|+||+ ..+.+..+++.+.+.+++.| ..|+++||-+...+
T Consensus 20 m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G--~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAG--HEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQG 97 (280)
T ss_dssp --CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTT--CEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHT
T ss_pred hhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCC--CeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcC
Confidence 456899999998 44678889999999998876 56888888432211
Q ss_pred -----chhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcC----------------CCCCcCCceEEEEeccC
Q 005624 150 -----EDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE----------------GGEWLQKLKYGVFGLGN 208 (687)
Q Consensus 150 -----~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~----------------~~~~l~~~~~aVFGlGd 208 (687)
-....+.+...+.+||+.|.| .+.+|.-.+.|++..-.... +...|+|+++.++-.-+
T Consensus 98 ~~~~dv~~~~~~l~~aD~iv~~~P~~-w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g 176 (280)
T 4gi5_A 98 TQSADIVAEQEKLLWADTVIFQFPLW-WFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAG 176 (280)
T ss_dssp CSCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECS
T ss_pred CCcHHHHHHHHHHHhCCEEEEEeccc-cccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecC
Confidence 011224567789999999999 89999999999988753110 12247888877664433
Q ss_pred CchHHHHHH--HHHHHHHHH--------HcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhhh
Q 005624 209 RQYEHFNKI--AKVVDEILA--------NQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 209 s~Y~~f~~~--ak~ld~~L~--------~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (687)
...+.|... ...+++.|. =.|.+.+-|....+.+...++++++|.+++-+.|.++.
T Consensus 177 ~~~~~y~~~g~~~~~~~~l~~~~~~~~~~~Gm~~l~~f~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 242 (280)
T 4gi5_A 177 GWAEHYSPRGINGPIDDILFPIQHGMLFYPGFEVLPPLVFYRTDKTDAGQFADQCAALAERLDTLW 242 (280)
T ss_dssp SCGGGGSTTBTTCCHHHHTHHHHCCCCCTTTCEECCCEEECSGGGCCHHHHHHHHHHHHHHHHTTT
T ss_pred CChHHccccccCCCHHHHHHHHHHHHHHcCCCeECCcEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 322222111 112333322 13666665666555555678889999999888888765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 687 | ||||
| d1ja1a1 | 279 | b.43.4.1 (A:240-518) NADPH-cytochrome p450 reducta | 1e-72 | |
| d1ja1a3 | 160 | c.25.1.4 (A:519-678) NADPH-cytochrome p450 reducta | 3e-59 | |
| d1f20a1 | 270 | b.43.4.1 (A:963-1232) Neuronal nitric-oxide syntha | 3e-56 | |
| d1ddga1 | 221 | b.43.4.1 (A:226-446) Sulfite reductase flavoprotei | 1e-50 | |
| d1f20a2 | 165 | c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synth | 3e-47 | |
| d1ddga2 | 153 | c.25.1.4 (A:447-599) Sulfite reductase flavoprotei | 2e-45 | |
| d1ja1a2 | 177 | c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductas | 3e-44 | |
| d1tlla2 | 202 | c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FM | 6e-39 | |
| d1fnda2 | 160 | c.25.1.1 (A:155-314) Ferredoxin reductase (flavodo | 7e-36 | |
| d1jb9a2 | 154 | c.25.1.1 (A:163-316) Ferredoxin reductase (flavodo | 8e-35 | |
| d1ykga1 | 146 | c.23.5.2 (A:63-208) Sulfite reductase alpha-compon | 2e-34 | |
| d1bvyf_ | 152 | c.23.5.1 (F:) FMN-binding domain of the cytochrome | 2e-34 | |
| d2bmwa2 | 162 | c.25.1.1 (A:142-303) Ferredoxin reductase (flavodo | 4e-29 | |
| d1f4pa_ | 147 | c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [ | 1e-26 | |
| d2fcra_ | 173 | c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: | 2e-26 | |
| d1yoba1 | 179 | c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelan | 2e-26 | |
| d1czna_ | 169 | c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus | 5e-22 | |
| d1ag9a_ | 175 | c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: | 5e-20 | |
| d1rlja_ | 135 | c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis | 2e-18 | |
| d1fuea_ | 163 | c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [Tax | 3e-18 | |
| d1oboa_ | 169 | c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7 | 4e-18 | |
| d2fz5a1 | 137 | c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdeni | 2e-15 | |
| d1vmea1 | 148 | c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, | 2e-14 | |
| d1tvca2 | 141 | c.25.1.2 (A:111-251) Methane monooxygenase compone | 1e-12 | |
| d1a8pa2 | 158 | c.25.1.1 (A:101-258) Ferredoxin reductase (flavodo | 1e-12 | |
| d2cnda2 | 146 | c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea | 3e-12 | |
| d5nula_ | 138 | c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii | 8e-12 | |
| d1gvha3 | 143 | c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal d | 2e-11 | |
| d1cqxa3 | 142 | c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal d | 3e-11 | |
| d1qfja2 | 135 | c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase | 3e-10 | |
| d1krha2 | 133 | c.25.1.2 (A:206-338) Benzoate dioxygenase reductas | 6e-10 | |
| d2piaa2 | 120 | c.25.1.2 (A:104-223) Phthalate dioxygenase reducta | 2e-08 | |
| d1umka2 | 147 | c.25.1.1 (A:154-300) cytochrome b5 reductase {Huma | 2e-08 | |
| d1e5da1 | 152 | c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreduct | 3e-08 | |
| d1ycga1 | 149 | c.23.5.1 (A:251-399) Nitric oxide reductase C-term | 2e-07 | |
| d1jb9a1 | 157 | b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxi | 3e-07 | |
| d1fdra2 | 148 | c.25.1.1 (A:101-248) Ferredoxin reductase (flavodo | 7e-07 | |
| d1fnda1 | 136 | b.43.4.2 (A:19-154) Ferredoxin reductase (flavodox | 1e-04 | |
| d2bmwa1 | 133 | b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxi | 1e-04 | |
| d2bmwa1 | 133 | b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxi | 6e-04 | |
| d1ep3b2 | 160 | c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase | 0.002 |
| >d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 279 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: NADPH-cytochrome p450 reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 234 bits (598), Expect = 1e-72
Identities = 82/286 (28%), Positives = 144/286 (50%), Gaps = 42/286 (14%)
Query: 279 AAISEYRVVFYDNADAS---VGE--KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDR 333
++I +Y +V +++ D + GE + N +DA++P + V ++L+ + +R
Sbjct: 1 SSIRQYELVVHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGT-ER 59
Query: 334 SCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPL 393
HLE DI+ + + YE+GDHV VY N S V + +LG D SL+ E+
Sbjct: 60 HLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKK 119
Query: 394 GKSTLPPTFPPCSLRTALTKYADLLSSPK------------------------------K 423
P P + RTALT Y D+ + P+ K
Sbjct: 120 -----HPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGK 174
Query: 424 DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVT 483
+ Y W+V ++R +L ++ ++PS +PP+ ++PRLQ RYY+I+SS +V P+ +H+
Sbjct: 175 ELYLSWVVEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYAIASSSKVHPNSVHIC 233
Query: 484 CALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNF 529
V + +GRV+KG+ ++W++ P ++ + P+FVR+S F
Sbjct: 234 AVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQF 279
|
| >d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: NADPH-cytochrome p450 reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 194 bits (494), Expect = 3e-59
Identities = 77/159 (48%), Positives = 107/159 (67%), Gaps = 1/159 (0%)
Query: 530 KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDE 589
+LP + P+IM+GPGTG+APF GF+QER L+E G E+G +LL++GCR DY+Y +E
Sbjct: 1 RLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREE 60
Query: 590 LNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMAR 648
L F + GAL+QL VAFSRE K YVQH + +W ++ E GA++YV GDA++MA+
Sbjct: 61 LARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAK 120
Query: 649 DVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
DV T + IV E G ++ ++A VK L GRY +VW
Sbjct: 121 DVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLNVW 159
|
| >d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 270 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: Neuronal nitric-oxide synthase FAD/NADP+ domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 190 bits (484), Expect = 3e-56
Identities = 72/281 (25%), Positives = 113/281 (40%), Gaps = 51/281 (18%)
Query: 282 SEYRVVFYDNA-DASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEF 340
+++R+ + A D + G + + + R+ L +P S RS +
Sbjct: 5 NKFRLTYVAEAPDLTQGLSNVHKKR---------VSAARLLSRQNLQSPKSSRSTIFVRL 55
Query: 341 DIAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLSP--DTYFSLHTDKEDGTPLGKST 397
G L Y+ GDH+GV+ N + V + L +P + + +E T LG +
Sbjct: 56 HTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNTALGVIS 115
Query: 398 ---LPPTFPPCSLRTALTKYADLLSSPKK--------------------------DEYAQ 428
PPC++ A Y D+ + P EY +
Sbjct: 116 NWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQEYEE 175
Query: 429 WIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVY 488
W +++EV+ EFPS + P + LQPRYYSISSSP + P +H+T A+V
Sbjct: 176 WKWGKNPTMVEVLEEFPSIQMPAT-LLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVS 234
Query: 489 EKTPT--GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 527
T G VH G+CS+W+ P FVR +
Sbjct: 235 YHTRDGEGPVHHGVCSSWLNRIQA------DDVVPCFVRGA 269
|
| >d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 221 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: Sulfite reductase flavoprotein species: Escherichia coli [TaxId: 562]
Score = 173 bits (440), Expect = 1e-50
Identities = 51/226 (22%), Positives = 97/226 (42%), Gaps = 15/226 (6%)
Query: 310 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEA 369
Y P ++++V +++ +S++ H+E D+ +GL Y+ GD +GV+ +N V+E
Sbjct: 6 YSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEL 65
Query: 370 LSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK----DE 425
+ LL L D T + PL ++ + + YA L S +
Sbjct: 66 VELLWLKGDE---PVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGD 122
Query: 426 YAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCA 485
A+ + + + M F A+ ++ L PR YSI+SS + +HVT
Sbjct: 123 KAKLQHYAATTPIVDMVRFSPAQLDAEALI-NLLRPLTPRLYSIASSQAEVENEVHVTVG 181
Query: 486 LVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFK 530
+V GR G S+++ + + + +F+ + NF+
Sbjct: 182 VV-RYDVEGRARAGGASSFLADRVE-----EEGEVRVFIEHNDNFR 221
|
| >d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: Neuronal nitric-oxide synthase FAD/NADP+ domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 162 bits (410), Expect = 3e-47
Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 5/163 (3%)
Query: 529 FKLPADAKVPIIMIGPGTGLAPFRGFLQER-FALQEAGAELGPSLLFFGCRNRKMDYIYE 587
F LP + +VP I++GPGTG+APFR F Q+R F +Q G P +L FGCR K+D+IY
Sbjct: 2 FHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYR 61
Query: 588 DELNNFVQSGALSQLIVAFSRE--GPTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAK 644
+E G +L A+SRE P K + + ++ L +G ++YVCGD
Sbjct: 62 EETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVT 121
Query: 645 SMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
MA DV + + I+ +QG L A + L+ RY D++
Sbjct: 122 -MAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 163
|
| >d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: Sulfite reductase flavoprotein species: Escherichia coli [TaxId: 562]
Score = 156 bits (395), Expect = 2e-45
Identities = 63/157 (40%), Positives = 103/157 (65%), Gaps = 4/157 (2%)
Query: 531 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDEL 590
LPA+ + P+IMIGPGTG+APFR F+Q+R A + G FFG + D++Y+ E
Sbjct: 1 LPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWL----FFGNPHFTEDFLYQVEW 56
Query: 591 NNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDV 650
+V+ G L+++ +A+SR+ K YVQ K+ E+ +++W +++GA++YVCGDA MA+DV
Sbjct: 57 QRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDV 116
Query: 651 HRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
+ L ++ E G +D+ A+ + L++ RY RDV+
Sbjct: 117 EQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 153
|
| >d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: NADPH-cytochrome p450 reductase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 154 bits (389), Expect = 3e-44
Identities = 66/162 (40%), Positives = 95/162 (58%), Gaps = 6/162 (3%)
Query: 99 EVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLK 158
++ + + +F+G+QTGTAE FA L+ +A + D ++Y D D
Sbjct: 10 KMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRG--MSADPEEY-DLADLSSLPEI 66
Query: 159 KENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIA 218
+++V F +ATYG+G+PTDNA FY W E L +K+ VFGLGN+ YEHFN +
Sbjct: 67 DKSLVVFCMATYGEGDPTDNAQDFYDWLQETDV---DLTGVKFAVFGLGNKTYEHFNAMG 123
Query: 219 KVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 260
K VD+ L GA+R+ +GLGDDD +E+DF WRE WP +
Sbjct: 124 KYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAV 165
|
| >d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: Nitric oxide (NO) synthase FMN domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 140 bits (353), Expect = 6e-39
Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 48/205 (23%)
Query: 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIV 163
+ K TI + T+TG ++ +AK L + + +D K + +++Y L+ E +V
Sbjct: 3 RVKATILYATETGKSQAYAKTLCEIFKHAFDA---KAMSMEEYDIVH------LEHEALV 53
Query: 164 FFFLATYGDGEPTDNAARFYKWFTEQK--------------------------------- 190
+T+G+G+P +N +F E +
Sbjct: 54 LVVTSTFGNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGP 113
Query: 191 ------EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC 244
E L +++ VFGLG+R Y HF VD +L G +R++ + GD+
Sbjct: 114 DLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDELCG 173
Query: 245 IEDDFSAWRELVWPELDNLLRDDDD 269
E+ F W + V+ ++ DD
Sbjct: 174 QEEAFRTWAKKVFKAACDVFCVGDD 198
|
| >d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 130 bits (328), Expect = 7e-36
Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 11/164 (6%)
Query: 530 KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDE 589
+P D IIM+G GTG+APFR FL + F + + F +Y++E
Sbjct: 2 LMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEE 61
Query: 590 LNNFVQSGALSQ-LIVAFSRE----GPTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDA 643
+ + L A SRE K Y+Q +M + + ++W ML + Y+Y+CG
Sbjct: 62 FEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCG-L 120
Query: 644 KSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
K M + + + ++ +G + L+ ++ +V+
Sbjct: 121 KGMEKGIDDIMVSLAAAEG----IDWIEYKRQLKKAEQWNVEVY 160
|
| >d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Maize (Zea mays), root isoform [TaxId: 4577]
Score = 127 bits (319), Expect = 8e-35
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 10/159 (6%)
Query: 534 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 593
D IMI GTG+APFRG+L+ F G F +Y++E ++
Sbjct: 1 DPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSY 60
Query: 594 VQSGALS-QLIVAFSREGPT----KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMAR 648
++ + + A SRE K YVQ K+ E S +I+ +L GA++Y CG M
Sbjct: 61 LKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKG-MMP 119
Query: 649 DVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
+ TL + + +G + + L+ ++ +V+
Sbjct: 120 GIQDTLKKVAERRG----ESWDQKLAQLKKNKQWHVEVY 154
|
| >d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: Sulfite reductase alpha-component CysJ N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 126 bits (316), Expect = 2e-34
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Query: 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFF 166
+TI +QTG A A+AL D+ A K+V+ DY ++ E ++
Sbjct: 1 ITIISASQTGNARRVAEALRDDLLAAKLN--VKLVNAGDYKFKQIASE------KLLIVV 52
Query: 167 LATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILA 226
+T G+GEP + A +K+ +K L+ + VF LG+ YE F + K D LA
Sbjct: 53 TSTQGEGEPPEEAVALHKFLFSKKAP--KLENTAFAVFSLGDTSYEFFCQSGKDFDSKLA 110
Query: 227 NQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 260
G +RL+ D + + S WR V L
Sbjct: 111 ELGGERLLDRVDADVEY--QAAASEWRARVVDAL 142
|
| >d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: FMN-binding domain of the cytochrome P450bm-3 species: Bacillus megaterium [TaxId: 1404]
Score = 126 bits (316), Expect = 2e-34
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
+ + +G+ GTAEG A+ LAD A ++ D + L +E V
Sbjct: 3 PLLVLYGSNMGTAEGTARDLADIAMSK---------GFAPQVATLDSHAGNLPREGAVLI 53
Query: 166 FLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYE-HFNKIAKVVDEI 224
A+Y P DNA +F W + + ++ ++Y VFG G++ + + K+ +DE
Sbjct: 54 VTASYNGHPP-DNAKQFVDWL--DQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDET 110
Query: 225 LANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 260
LA +GA+ + G D E + WRE +W ++
Sbjct: 111 LAAKGAENIADRGEADASDDFEGTYEEWREHMWSDV 146
|
| >d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Score = 111 bits (277), Expect = 4e-29
Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 15/167 (8%)
Query: 531 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAEL-----GPSLLFFGCRNRKMDYI 585
LP D + +IM+ GTG+ P R +L F E A G S L FG
Sbjct: 1 LPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILY 60
Query: 586 YEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSE-----GAYLYVC 640
E+ + +L A SRE + + + ++ ++ + L + + Y+C
Sbjct: 61 KEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYIC 120
Query: 641 GDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687
G M + L ++G K+L+ GR+ + +
Sbjct: 121 GPPP-MEEGIDAALSAAAAKEG----VTWSDYQKDLKKAGRWHVETY 162
|
| >d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} Length = 147 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Desulfovibrio vulgaris [TaxId: 881]
Score = 104 bits (259), Expect = 1e-26
Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 15/158 (9%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K I +G+ TG E A+ +A E ++D E + ++V
Sbjct: 2 KALIVYGSTTGNTEYTAETIARELADAG-------YEVDSRDAASVEAGGLFEGFDLVLL 54
Query: 166 FLATYGD--GEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDE 223
+T+GD E D+ + E Q K FG G+ +E+F ++E
Sbjct: 55 GCSTWGDDSIELQDDFIPLFDSLEET-----GAQGRKVACFGCGDSSWEYFCGAVDAIEE 109
Query: 224 ILANQGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPEL 260
L N GA+ + D D + DD W V +
Sbjct: 110 KLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI 147
|
| >d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Chondrus crispus [TaxId: 2769]
Score = 104 bits (260), Expect = 2e-26
Identities = 38/180 (21%), Positives = 67/180 (37%), Gaps = 34/180 (18%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ IFF T TG A + A+ D +D+DD + LK +++F
Sbjct: 1 KIGIFFSTSTGNTTEVADFIGKTLGAKADA----PIDVDD-----VTDPQALKDYDLLFL 51
Query: 166 FLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQ--YEHFNKIAKVVDE 223
T+ G T+ + + F K ++ L +FGLG+ + ++F + + +
Sbjct: 52 GAPTWNTGADTERSGTSWDEFLYDKLPEVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHD 111
Query: 224 ILANQGAK---------------------RLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 260
A QGAK + + + L + +E + W E V E
Sbjct: 112 CFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGLPLDMVNDQIPMEKRVAGWVEAVVSET 171
|
| >d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Azotobacter vinelandii [TaxId: 354]
Score = 104 bits (260), Expect = 2e-26
Identities = 32/183 (17%), Positives = 62/183 (33%), Gaps = 37/183 (20%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ +FFG+ TG AK++ + ++++ + E+ + +
Sbjct: 2 KIGLFFGSNTGKTRKVAKSIKKRFDDET---MSDALNVNRVSAEDF------AQYQFLIL 52
Query: 166 FLATYGDGEPTDNAARFYKWFTE---QKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKV 220
T G+GE ++ E K G +FGLG++ E++
Sbjct: 53 GTPTLGEGELPGLSSDAENESWEEFLPKIEGLDFSGKTVALFGLGDQVGYPENYLDALGE 112
Query: 221 VDEILANQGAKRLVP-------------------VGLGDDD----QCIEDDFSAWRELVW 257
+ ++GAK + VGL D ++ +AW +
Sbjct: 113 LYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFVGLALDLDNQSGKTDERVAAWLAQIA 172
Query: 258 PEL 260
PE
Sbjct: 173 PEF 175
|
| >d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC 7942 [TaxId: 1140]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Synechococcus elongatus PCC 7942 [TaxId: 1140]
Score = 91.3 bits (226), Expect = 5e-22
Identities = 31/179 (17%), Positives = 64/179 (35%), Gaps = 37/179 (20%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ +F+GTQTG + A+++ E +VD++D A+ + + +
Sbjct: 2 KIGLFYGTQTGVTQTIAESIQQEFGGES------IVDLNDIANADASDLN---AYDYLII 52
Query: 166 FLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEIL 225
T+ GE + Y G +K+ Y G ++F +++E +
Sbjct: 53 GCPTWNVGELQSDWEGIYDDLDSVNFQG---KKVAYFGAGDQVGYSDNFQDAMGILEEKI 109
Query: 226 ANQGAKRLVP-------------------VGLGDDDQCIEDDFS-----AWRELVWPEL 260
++ G++ + VGL D+ + D + W + E
Sbjct: 110 SSLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDEDN-QPDLTKNRIKTWVSQLKSEF 167
|
| >d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Escherichia coli [TaxId: 562]
Score = 85.9 bits (212), Expect = 5e-20
Identities = 36/185 (19%), Positives = 62/185 (33%), Gaps = 39/185 (21%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
IFFG+ TG E AK + + + V DI + E+ E +I+
Sbjct: 2 ITGIFFGSDTGNTENIAKMIQKQLGK----DVADVHDIAKSSKEDLE------AYDILLL 51
Query: 166 FLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEIL 225
+ T+ GE + F+ E G + + G E+F + +I+
Sbjct: 52 GIPTWYYGEAQCDWDDFFPTLEEIDFNG---KLVALFGCGDQEDYAEYFCDALGTIRDII 108
Query: 226 ANQGAKRLVP--------------------VGLGDDD----QCIEDDFSAWRELVWPE-- 259
+GA + VGL D+ + + W + + E
Sbjct: 109 EPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWVKQISEELH 168
Query: 260 LDNLL 264
LD +L
Sbjct: 169 LDEIL 173
|
| >d1rlja_ c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavoprotein NrdI domain: Flavoprotein NrdI species: Bacillus subtilis [TaxId: 1423]
Score = 80.0 bits (197), Expect = 2e-18
Identities = 24/156 (15%), Positives = 43/156 (27%), Gaps = 35/156 (22%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
V I F ++TG + F + + + +E +
Sbjct: 10 MVQIIFDSKTGNVQRFVNKTGFQ--------------------QIRKVDEMDHVDTPFVL 49
Query: 166 FLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEI 224
T G+ + F E L GV GN+ + ++F K A +
Sbjct: 50 VTYTTNFGQVPASTQSFL----------EKYAHLLLGVAASGNKVWGDNFAKSADTISRQ 99
Query: 225 LANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 260
+ G D + F+ E V +
Sbjct: 100 YQVPILHKFELSGTSKD----VELFTQEVERVVTKS 131
|
| >d1fuea_ c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [TaxId: 210]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Helicobacter pylori [TaxId: 210]
Score = 80.1 bits (197), Expect = 3e-18
Identities = 31/177 (17%), Positives = 53/177 (29%), Gaps = 40/177 (22%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ IFFGT +G AE A+ ++ +VVD+ + +E+ V
Sbjct: 2 KIGIFFGTDSGNAEAIAEKISKAIGN------AEVVDVAKAS------KEQFNGFTKVIL 49
Query: 166 FLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEIL 225
T G G+ + F G+ GLG++ +
Sbjct: 50 VAPTAGAGDLQTDWEDFLGTLEA-----SDFANKTIGLVGLGDQDTYSETFAEGIFHIYE 104
Query: 226 ANQGAKRLVP-------------------VGLGDDDQC----IEDDFSAWRELVWPE 259
+ K + VGL D+ ++ + W E V
Sbjct: 105 KAKAGKVVGQTSTDGYHFAASKAVEGGKFVGLVIDEDNQDDLTDERIAKWVEQVRGS 161
|
| >d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Anabaena, pcc 7119 and 7120 [TaxId: 1163]
Score = 80.1 bits (197), Expect = 4e-18
Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 36/178 (20%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ +F+GTQTG E A+ + DE + + D+ + L +
Sbjct: 3 KIGLFYGTQTGKTESVAEIIRDEFGN----DVVTLHDVSQAEVTD------LNDYQYLII 52
Query: 166 FLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEIL 225
T GE + Y + G + + Y G ++F +++E +
Sbjct: 53 GCPTLNIGELQSDWEGLYSELDDVDFNG---KLVAYFGTGDQIGYADNFQDAIGILEEKI 109
Query: 226 ANQGAKRLVP-------------------VGLGDDD----QCIEDDFSAWRELVWPEL 260
+ +G K + VGL D+ +D +W + E
Sbjct: 110 SQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDNQSDLTDDRIKSWVAQLKSEF 167
|
| >d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Megasphaera elsdenii [TaxId: 907]
Score = 71.3 bits (174), Expect = 2e-15
Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 22/145 (15%)
Query: 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFF 166
V I + + TG E A + +A + D + + ++++
Sbjct: 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFE--------DTNVDDVASKDVILLG 53
Query: 167 LATYGDGE-PTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEIL 225
G E F+ + +G K G+FG + +
Sbjct: 54 CPAMGSEELEDSVVEPFFTDLAPKLKG------KKVGLFGSYGWGSGEW---MDAWKQRT 104
Query: 226 ANQGAKRLVPVGLG----DDDQCIE 246
+ GA + + + +C E
Sbjct: 105 EDTGATVIGTAIVNEMPDNAPECKE 129
|
| >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 148 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: ROO-like flavoprotein TM0755, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 69.1 bits (168), Expect = 2e-14
Identities = 22/156 (14%), Positives = 49/156 (31%), Gaps = 14/156 (8%)
Query: 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIV 163
K KVT+ + + G E K D + + + ++ + + + +
Sbjct: 3 KGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEIL-KDIPDSEAL 61
Query: 164 FFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDE 223
F ++TY + + + VFG + + E
Sbjct: 62 IFGVSTYEAEIHPLMRFTLLEII------DKANYEKPVLVFG----VHGWAPSAERTAGE 111
Query: 224 ILANQGAKRLVPV---GLGDDDQCIEDDFSAWRELV 256
+L + L G D++ IE+ S ++ +
Sbjct: 112 LLKETKFRILSFTEIKGSNMDERKIEEAISLLKKEL 147
|
| >d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 141 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Methane monooxygenase component C, MmoC species: Methylococcus capsulatus [TaxId: 414]
Score = 63.5 bits (153), Expect = 1e-12
Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 6/127 (4%)
Query: 529 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYED 588
F L P + GTGLAP +++ + N + + Y D
Sbjct: 1 FGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWTAPN-----ETRIYFGVNTEPELFYID 55
Query: 589 ELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMAR 648
EL + +S + E Q ++ + +Y+CG M
Sbjct: 56 ELKSLERSMRNLTVKACVWHPSGDWEGEQGSPIDALREDLESSDANPDIYLCG-PPGMID 114
Query: 649 DVHRTLH 655
+
Sbjct: 115 AACELVR 121
|
| >d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Azotobacter vinelandii [TaxId: 354]
Score = 63.8 bits (154), Expect = 1e-12
Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 17/145 (11%)
Query: 538 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 597
+ M+ GTGLAPF +Q+ + +L G R + + QS
Sbjct: 9 HLYMLSTGTGLAPFMSLIQDPEVYERF----EKVVLIHGVRQVNELAYQQFITEHLPQSE 64
Query: 598 ALSQLIVA------------FSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKS 645
+ + F +G + ++ + + + + + +CG + S
Sbjct: 65 YFGEAVKEKLIYYPTVTRESFHNQGRLTDLMRSGKLFEDIGLPPINPQDDRAMICG-SPS 123
Query: 646 MARDVHRTLHTIVQEQGSLDSSKAE 670
M + L + +
Sbjct: 124 MLDESCEVLDGFGLKISPRMGEPGD 148
|
| >d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Nitrate reductase species: Corn (Zea mays) [TaxId: 4577]
Score = 62.7 bits (151), Expect = 3e-12
Identities = 16/137 (11%), Positives = 41/137 (29%), Gaps = 10/137 (7%)
Query: 528 NFKL---PADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDY 584
+F + +A+ + MI G+G+ P +Q L++ + L + R
Sbjct: 2 SFVINGKQRNAR-RLAMICGGSGITPMYQIIQA--VLRDQPEDHTEMHLVYANRTEDDIL 58
Query: 585 IYEDELNNFVQSGALSQLIVAFSREGPTKE----YVQHKMMEKSSDIWNMLSEGAYLYVC 640
+ ++ + ++ + +E V + + C
Sbjct: 59 LRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALAC 118
Query: 641 GDAKSMARDVHRTLHTI 657
G + + L +
Sbjct: 119 GPPPMIQFAISPNLEKM 135
|
| >d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Clostridium beijerinckii [TaxId: 1520]
Score = 60.9 bits (147), Expect = 8e-12
Identities = 19/149 (12%), Positives = 50/149 (33%), Gaps = 18/149 (12%)
Query: 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFF 166
+ I + + TG E A+ +A + + D ++L E+I+
Sbjct: 1 MKIVYWSGTGNTEKMAELIAKGIIESGKD--------VNTINVSDVNIDELLNEDILILG 52
Query: 167 LATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILA 226
+ D ++ + K G+ + +G +G G+ ++ + +E +
Sbjct: 53 CSAMTDEVLEESEFEPFIEEISTKISGKKV--ALFGSYGWGDGKW------MRDFEERMN 104
Query: 227 NQGAKRLVPVGLGDDDQCIEDDFSAWREL 255
G + + ++ ++ E
Sbjct: 105 GYGCVVVETPLIVQNE--PDEAEQDCIEF 131
|
| >d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Flavohemoglobin, C-terminal domain domain: Flavohemoglobin, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 59.9 bits (144), Expect = 2e-11
Identities = 16/128 (12%), Positives = 31/128 (24%), Gaps = 8/128 (6%)
Query: 531 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDEL 590
+ P+ +I G G P L F N + + DE+
Sbjct: 1 MAVADDTPVTLISAGVGQTPMLAMLDTLAKAGHTAQV----NWFHAAENGDVHA-FADEV 55
Query: 591 NNFVQSGALSQLIVAFSREGPT---KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMA 647
QS + + K + + S + S+ +
Sbjct: 56 KELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFM 115
Query: 648 RDVHRTLH 655
+ + L
Sbjct: 116 QFTAKQLV 123
|
| >d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Flavohemoglobin, C-terminal domain domain: Flavohemoglobin, C-terminal domain species: Alcaligenes eutrophus [TaxId: 106590]
Score = 59.6 bits (143), Expect = 3e-11
Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 9/125 (7%)
Query: 534 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 593
DAK PI++I G GL P L+ A + G RN + + +
Sbjct: 3 DAKTPIVLISGGVGLTPMVSMLKVALQ-----APPRQVVFVHGARNSAVHAMRDRLREAA 57
Query: 594 VQSGALSQLIVAFSREGPTKE---YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDV 650
L + + Y +++ ++L A Y+CG M R
Sbjct: 58 KTYENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLPDADYYICGPIPFM-RMQ 116
Query: 651 HRTLH 655
H L
Sbjct: 117 HDALK 121
|
| >d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: NAD(P)H:flavin oxidoreductase species: Escherichia coli [TaxId: 562]
Score = 56.4 bits (135), Expect = 3e-10
Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 7/121 (5%)
Query: 534 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 593
D + P+I+I GTG + R L A +++G R + Y +
Sbjct: 3 DEERPMILIAGGTGFSYARSILLTALARNPN----RDITIYWGGREEQHLYDLCELEALS 58
Query: 594 VQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRT 653
++ L + V E + + D + +Y+ G MA+
Sbjct: 59 LKHPGLQVVPVVEQPEAGWRGRTGTVLTAVLQDHGTL--AEHDIYIAG-RFEMAKIARDL 115
Query: 654 L 654
Sbjct: 116 F 116
|
| >d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Benzoate dioxygenase reductase species: Acinetobacter sp. [TaxId: 472]
Score = 55.7 bits (133), Expect = 6e-10
Identities = 27/121 (22%), Positives = 39/121 (32%), Gaps = 8/121 (6%)
Query: 534 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 593
D K P++M+ GTG+APF LQ P L FG ++L+
Sbjct: 3 DVKRPVLMLAGGTGIAPFLSMLQVLEQKGSE----HPVRLVFGVTQDCDLV-ALEQLDAL 57
Query: 594 VQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRT 653
Q + + E + D N +Y+CG M V
Sbjct: 58 QQKLPWFEYRTVVAHAESQHERKGYVTGHIEYDWLNG--GEVDVYLCG-PVPMVEAVRSW 114
Query: 654 L 654
L
Sbjct: 115 L 115
|
| >d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Phthalate dioxygenase reductase species: Pseudomonas cepacia, db01 [TaxId: 292]
Score = 50.7 bits (120), Expect = 2e-08
Identities = 18/134 (13%), Positives = 36/134 (26%), Gaps = 18/134 (13%)
Query: 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYE 587
F L AK I++ G G+ P ++ A L++ R+ +
Sbjct: 1 EFPLDKRAK-SFILVAGGIGITPMLSMARQLRAEGL-----RSFRLYYLTRDP-EGTAFF 53
Query: 588 DELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMA 647
DEL + + ++ ++Y CG +++
Sbjct: 54 DELTSDEWRSDVKIHHDHGDPTKA----------FDFWSVFEKSKPAQHVYCCG-PQALM 102
Query: 648 RDVHRTLHTIVQEQ 661
V
Sbjct: 103 DTVRDMTGHWPSGT 116
|
| >d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 147 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: cytochrome b5 reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.1 bits (121), Expect = 2e-08
Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 5/131 (3%)
Query: 526 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYI 585
+ + + K + MI GTG+ P ++ + L F + K +
Sbjct: 9 KKSNPIIRTVK-SVGMIAGGTGITPMLQVIRAIMKDPDDHTVC---HLLFANQTEKDILL 64
Query: 586 YEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKS-SDIWNMLSEGAYLYVCGDAK 644
+ + A +L R +Y Q + E+ D E + +CG
Sbjct: 65 RPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPP 124
Query: 645 SMARDVHRTLH 655
+ L
Sbjct: 125 MIQYACLPNLD 135
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Score = 51.2 bits (122), Expect = 3e-08
Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 14/132 (10%)
Query: 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIV 163
KV IF+ + + E A+ LA+ R V + A + ++ V
Sbjct: 2 TNKVVIFYDSMWHSTEKMARVLAESFRD----EGCTVKLMWCKACHHSQIMSEISDAGAV 57
Query: 164 FFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDE 223
T+ +G + +G Q G FG + + KV+ E
Sbjct: 58 IVGSPTHNNGILPY-----VAGTLQYIKGL-RPQNKIGGAFG----SFGWSGESTKVLAE 107
Query: 224 ILANQGAKRLVP 235
L G
Sbjct: 108 WLTGMGFDMPAT 119
|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} Length = 149 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Nitric oxide reductase C-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Score = 48.6 bits (115), Expect = 2e-07
Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 14/136 (10%)
Query: 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENI 162
GK K I + T + E A AL D +V + ++ +++
Sbjct: 1 GKAKAVIAYDTMWLSTEKMAHALMDGLV----AGGCEVKLFKLSVSDRNDVIKEILDARA 56
Query: 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVD 222
V T + + G + FG Y K+++
Sbjct: 57 VLVGSPTINNDILPVVSPLLDDLV------GLRPKNKVGLAFG----AYGWGGGAQKILE 106
Query: 223 EILANQGAKRLVPVGL 238
E L + + G
Sbjct: 107 ERLKAAKIELIAEPGP 122
|
| >d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Maize (Zea mays), root isoform [TaxId: 4577]
Score = 48.4 bits (115), Expect = 3e-07
Identities = 19/101 (18%), Positives = 28/101 (27%), Gaps = 15/101 (14%)
Query: 442 SEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALV-------YEKTPTG 494
+ PP P R YSI+S+ V E
Sbjct: 64 GQSYGVIPPGENPKKPGAP-QNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKED 122
Query: 495 RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ-SNFKLPAD 534
G+CS ++ NS P +K + LP +
Sbjct: 123 PSKNGVCSNFLCNSKPGDK------IQLTGPSGKIMLLPEE 157
|
| >d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} Length = 148 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Escherichia coli [TaxId: 562]
Score = 47.3 bits (111), Expect = 7e-07
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 11/123 (8%)
Query: 538 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 597
+ M+ GT + P+ L+ L +L R +
Sbjct: 8 TLWMLATGTAIGPYLSILRLGKDLDRF----KNLVLVHAARYAADLSYLPLMQELEKRYE 63
Query: 598 ALSQLIVAFSREGPTKEYV-----QHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVH 651
++ SRE + E S I + E +++ +CG M RD
Sbjct: 64 GKLRIQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCG-NPQMVRDTQ 122
Query: 652 RTL 654
+ L
Sbjct: 123 QLL 125
|
| >d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 40.5 bits (94), Expect = 1e-04
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 461 RLQPRYYSISSSPRVAPS---RIHVTCALVYEKTPTGRVHKGLCSTWMKN 507
+ R YSI+SS + + + G KG+CS ++ +
Sbjct: 71 PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCD 120
|
| >d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Score = 40.1 bits (93), Expect = 1e-04
Identities = 12/53 (22%), Positives = 19/53 (35%)
Query: 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 361
+Y P V + L H++FD+ G L Y G +G+
Sbjct: 6 LYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPG 58
|
| >d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Score = 38.2 bits (88), Expect = 6e-04
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 463 QPRYYSISSSPRVAPSRIHVTCALV----YEKTPTGRVHKGLCSTWMKNSLP 510
+ R YSI+S+ V Y+ +G G+CST++ + P
Sbjct: 67 KLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEP 118
|
| >d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Dihydroorotate dehydrogenase B, PyrK subunit domain: Dihydroorotate dehydrogenase B, PyrK subunit species: Lactococcus lactis, isozyme B [TaxId: 1358]
Score = 37.4 bits (86), Expect = 0.002
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 538 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 593
I++IG G G+ P ++ + G + I E+E +N
Sbjct: 10 KILIIGGGIGVPPLYEL------AKQLEKTGCQMTILLGFASEN-VKILENEFSNL 58
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 687 | |||
| d1ja1a1 | 279 | NADPH-cytochrome p450 reductase {Rat (Rattus norve | 100.0 | |
| d1f20a1 | 270 | Neuronal nitric-oxide synthase FAD/NADP+ domain {R | 100.0 | |
| d1ja1a3 | 160 | NADPH-cytochrome p450 reductase {Rat (Rattus norve | 100.0 | |
| d1ddga1 | 221 | Sulfite reductase flavoprotein {Escherichia coli [ | 100.0 | |
| d1ja1a2 | 177 | NADPH-cytochrome p450 reductase, N-terminal domain | 100.0 | |
| d1ykga1 | 146 | Sulfite reductase alpha-component CysJ N-terminal | 100.0 | |
| d1tlla2 | 202 | Nitric oxide (NO) synthase FMN domain {Rat (Rattus | 100.0 | |
| d1f20a2 | 165 | Neuronal nitric-oxide synthase FAD/NADP+ domain {R | 99.98 | |
| d1bvyf_ | 152 | FMN-binding domain of the cytochrome P450bm-3 {Bac | 99.97 | |
| d1ddga2 | 153 | Sulfite reductase flavoprotein {Escherichia coli [ | 99.97 | |
| d1fnda2 | 160 | Ferredoxin reductase (flavodoxin reductase) {Spina | 99.96 | |
| d1f4pa_ | 147 | Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} | 99.96 | |
| d1jb9a2 | 154 | Ferredoxin reductase (flavodoxin reductase) {Maize | 99.95 | |
| d2fcra_ | 173 | Flavodoxin {Chondrus crispus [TaxId: 2769]} | 99.94 | |
| d2bmwa2 | 162 | Ferredoxin reductase (flavodoxin reductase) {Cyano | 99.94 | |
| d1yoba1 | 179 | Flavodoxin {Azotobacter vinelandii [TaxId: 354]} | 99.94 | |
| d1czna_ | 169 | Flavodoxin {Synechococcus elongatus PCC 7942 [TaxI | 99.93 | |
| d1ag9a_ | 175 | Flavodoxin {Escherichia coli [TaxId: 562]} | 99.93 | |
| d1oboa_ | 169 | Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 11 | 99.91 | |
| d1rlja_ | 135 | Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423] | 99.88 | |
| d1fuea_ | 163 | Flavodoxin {Helicobacter pylori [TaxId: 210]} | 99.87 | |
| d1tvca2 | 141 | Methane monooxygenase component C, MmoC {Methyloco | 99.84 | |
| d1krha2 | 133 | Benzoate dioxygenase reductase {Acinetobacter sp. | 99.82 | |
| d1qfja2 | 135 | NAD(P)H:flavin oxidoreductase {Escherichia coli [T | 99.78 | |
| d2fz5a1 | 137 | Flavodoxin {Megasphaera elsdenii [TaxId: 907]} | 99.78 | |
| d1fdra2 | 148 | Ferredoxin reductase (flavodoxin reductase) {Esche | 99.77 | |
| d1gvha3 | 143 | Flavohemoglobin, C-terminal domain {Escherichia co | 99.76 | |
| d1jb9a1 | 157 | Ferredoxin reductase (flavodoxin reductase) N-term | 99.76 | |
| d1vmea1 | 148 | ROO-like flavoprotein TM0755, C-terminal domain {T | 99.75 | |
| d1cqxa3 | 142 | Flavohemoglobin, C-terminal domain {Alcaligenes eu | 99.75 | |
| d1e5da1 | 152 | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal | 99.71 | |
| d5nula_ | 138 | Flavodoxin {Clostridium beijerinckii [TaxId: 1520] | 99.71 | |
| d2piaa2 | 120 | Phthalate dioxygenase reductase {Pseudomonas cepac | 99.7 | |
| d2cnda2 | 146 | Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} | 99.69 | |
| d1umka2 | 147 | cytochrome b5 reductase {Human (Homo sapiens) [Tax | 99.69 | |
| d1ycga1 | 149 | Nitric oxide reductase C-terminal domain {Moorella | 99.67 | |
| d1a8pa2 | 158 | Ferredoxin reductase (flavodoxin reductase) {Azoto | 99.63 | |
| d1fnda1 | 136 | Ferredoxin reductase (flavodoxin reductase) N-term | 99.54 | |
| d2bmwa1 | 133 | Ferredoxin reductase (flavodoxin reductase) N-term | 99.52 | |
| d1ep3b2 | 160 | Dihydroorotate dehydrogenase B, PyrK subunit {Lact | 99.4 | |
| d2arka1 | 184 | Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} | 99.32 | |
| d1ydga_ | 201 | Trp repressor binding protein WrbA {Deinococcus ra | 98.92 | |
| d2a5la1 | 196 | Trp repressor binding protein WrbA {Pseudomonas ae | 98.78 | |
| d1nni1_ | 171 | Azobenzene reductase {Bacillus subtilis [TaxId: 14 | 98.16 | |
| d1t0ia_ | 185 | Hypothetical protein Ylr011wp {Baker's yeast (Sacc | 98.14 | |
| d1sqsa_ | 232 | Hypothetical protein SP1951 {(Streptococcus pneumo | 98.1 | |
| d2fzva1 | 233 | Putative arsenical resistance protein {Shigella fl | 98.08 | |
| d1rlia_ | 179 | Hypothetical protein YwqN {Bacillus subtilis [TaxI | 97.85 | |
| d1rtta_ | 174 | Hypothetical protein PA1204 {Pseudomonas aeruginos | 97.67 | |
| d2qwxa1 | 230 | Quinone reductase type 2 (menadione reductase) {Hu | 97.63 | |
| d1fdra1 | 99 | Ferredoxin reductase (flavodoxin reductase) N-term | 97.48 | |
| d2z98a1 | 200 | ACP phosphodiesterase AcpD {Escherichia coli [TaxI | 97.4 | |
| d1d4aa_ | 273 | NAD(P)H:quinone reductase {Human (Homo sapiens) [T | 97.37 | |
| d1qfja1 | 97 | NAD(P)H:flavin oxidoreductase {Escherichia coli [T | 97.0 | |
| d1a8pa1 | 99 | Ferredoxin reductase (flavodoxin reductase) N-term | 96.88 | |
| d1cqxa2 | 111 | Flavohemoglobin, central domain {Alcaligenes eutro | 96.74 | |
| d1ep3b1 | 101 | Dihydroorotate dehydrogenase B, PyrK subunit {Lact | 96.72 | |
| d1krha1 | 100 | Benzoate dioxygenase reductase {Acinetobacter sp. | 96.62 | |
| d1gvha2 | 107 | Flavohemoglobin, central domain {Escherichia coli | 96.45 | |
| d2piaa1 | 103 | Phthalate dioxygenase reductase {Pseudomonas cepac | 96.44 | |
| d2cnda1 | 114 | Nitrate reductase core domain {Corn (Zea mays) [Ta | 96.31 | |
| d1tvca1 | 109 | Methane monooxygenase component C, MmoC {Methyloco | 95.99 | |
| d1umka1 | 124 | cytochrome b5 reductase {Human (Homo sapiens) [Tax | 94.61 |
| >d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: NADPH-cytochrome p450 reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.1e-45 Score=380.80 Aligned_cols=218 Identities=35% Similarity=0.692 Sum_probs=200.0
Q ss_pred CCCCccccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEE
Q 005624 304 ANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSL 383 (687)
Q Consensus 304 ~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i 383 (687)
.+.+.+|+.+||+.|+|+.|++|+ ++++|+|+||+|||++++++|+|||||||||.|+++.|++++++||+++|+.+.+
T Consensus 31 ~~~~~~y~~~nP~~A~v~~n~~L~-~~s~k~~~Hie~dl~~s~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~ 109 (279)
T d1ja1a1 31 ENQKPPFDAKNPFLAAVTANRKLN-QGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSL 109 (279)
T ss_dssp TSCCSSCBTTBCEEEEEEEEEECC-SSSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEE
T ss_pred ccCCCCCCCCCCEEeEEEEEEEeC-CCCCccEEEEEEEcCCCCceecCCCEEEEEeCCCHHHHHHHHHHcCCCCceEEEe
Confidence 345678999999999999999999 4678999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCcCCCCCCCCCCC-cCcHHHHHHHhhhhcCCCCh------------------------------hHHHHHHHh
Q 005624 384 HTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKK------------------------------DEYAQWIVA 432 (687)
Q Consensus 384 ~~~~~~~~~l~~~~~~~~~p-p~tl~~~l~~y~Dl~~~p~k------------------------------~~y~~~i~~ 432 (687)
+...+++ ..+.||| |||++++|++|+||+++|+| ++|.+|+..
T Consensus 110 ~~~~~~~------~~~~p~p~~~tl~~lL~~~~Di~~~p~k~~l~~La~~a~~~~~k~~L~~l~~~~~~~~~~y~~~~~~ 183 (279)
T d1ja1a1 110 NNLDEES------NKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVE 183 (279)
T ss_dssp EESCTTC------SCCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHGGGCSSSHHHHHHHHHTTT
T ss_pred ccCCCcc------ccccCCCCchhHHHHHHhhccccCCCcHHHHHHHHHHcCChHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 8765432 3456888 99999999999999999986 457888888
Q ss_pred cCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCC
Q 005624 433 SQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPME 512 (687)
Q Consensus 433 ~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~ 512 (687)
.+++++|+|.+||++++|++.|++. +|+|+||+|||||||..+|++++|||++|.+.+..|+.+.|+||+||.++.+++
T Consensus 184 ~~~~ildlL~~fps~~~pl~~ll~~-lp~L~PR~YSISSSp~~~p~~v~ltv~vV~y~~~~g~~r~GvcS~~L~~l~~~~ 262 (279)
T d1ja1a1 184 ARRHILAILQDYPSLRPPIDHLCEL-LPRLQARYYAIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAG 262 (279)
T ss_dssp TTCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSEEECHHHHHHHHCCCCS
T ss_pred cCCCHHHHHhhCcccCCCHHHHHHh-CccCCCceeeEecCcccCCCEEEEEEEEEEeecCCCCcccccchHHHhhcCCCC
Confidence 9999999999999999999999975 699999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCceeeEEEeeCCc
Q 005624 513 KSNDCSWAPIFVRQSNF 529 (687)
Q Consensus 513 ~~~~~~~~~v~v~~~~F 529 (687)
+...+..+|||+|.++|
T Consensus 263 ~~~~~~~vpifir~s~F 279 (279)
T d1ja1a1 263 ENGGRALVPMFVRKSQF 279 (279)
T ss_dssp TTSSCCEEEEEEECCSC
T ss_pred CcCCceEEEEEEcCCCC
Confidence 76666789999999988
|
| >d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: Neuronal nitric-oxide synthase FAD/NADP+ domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=4.1e-41 Score=347.31 Aligned_cols=211 Identities=32% Similarity=0.602 Sum_probs=179.9
Q ss_pred ccCCCCeeEEEeeeecccCCCCCCceEEEEEeecC-CCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCC--ceEEEeeC
Q 005624 310 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLSPD--TYFSLHTD 386 (687)
Q Consensus 310 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~-~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d--~~~~i~~~ 386 (687)
+..++|+.|+|+.+++|+.++++|+|+|||||+.| ++++|+|||||||||.|+++.|++++++||++++ ..+.++..
T Consensus 25 ~~~k~~~~a~v~~~~~L~~~~s~r~t~hield~~g~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~~~~ 104 (270)
T d1f20a1 25 VHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEML 104 (270)
T ss_dssp HHTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEEE
T ss_pred hccCCcEeeEEEEEEeccCCCCCccEEEEEEEcCCCCCCeEcCCCEEEEEeCCCHHHHHHHHHHhCCCCccCEEEEeeec
Confidence 34578999999999999999999999999999986 4899999999999999999999999999999874 55655543
Q ss_pred CCCCCcCCC--CCCCCCC-CcCcHHHHHHHhhhhcCCCCh--------------------------hHHHHHHHhcCCCH
Q 005624 387 KEDGTPLGK--STLPPTF-PPCSLRTALTKYADLLSSPKK--------------------------DEYAQWIVASQRSL 437 (687)
Q Consensus 387 ~~~~~~l~~--~~~~~~~-pp~tl~~~l~~y~Dl~~~p~k--------------------------~~y~~~i~~~~~~l 437 (687)
...+..+.. .....++ ||||++++|++|+||+++|+| ++|.+|+...++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~p~tl~~~l~~~~Di~~~p~~~~l~~La~~~~~~~ek~~L~~l~~~~~~~~~~~~~~~~tl 184 (270)
T d1f20a1 105 EERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQEYEEWKWGKNPTM 184 (270)
T ss_dssp EEESSSTTCEEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTTCSHHHHHHHHHHCCCH
T ss_pred ccccccccccccccccCCCCCccHHHHHHhheecccCCCHHHHHHHHHHCCCHHHHHHHHhhcccHHHHHHHHhccCCcH
Confidence 322222211 1112334 489999999999999999987 67899999999999
Q ss_pred HHHHHhCCCCCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCC--CccccCccchhhcccCCCCCCC
Q 005624 438 LEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGLCSTWMKNSLPMEKSN 515 (687)
Q Consensus 438 ~dvl~~fps~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~--g~~~~G~~S~~L~~~~~~~~~~ 515 (687)
+|+|.+||++++|++.|++. +|+|+||+|||||||..++++++|||++|.+.+.. |+.+.|+||+||.++.+|+
T Consensus 185 ldvL~~fps~~~pl~~ll~~-lp~L~PR~YSIsSSp~~~p~~v~Ltv~vV~y~~~~~~g~~r~GvcS~~L~~l~~Gd--- 260 (270)
T d1f20a1 185 VEVLEEFPSIQMPATLLLTQ-LSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADD--- 260 (270)
T ss_dssp HHHHHHSTTBCBCHHHHHHH-SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTC---
T ss_pred HHHHHhccccCCCHHHHHHh-ccccccceeEEecCccCCCCEEEEEEEEEEEeccCCCCCeeeeechHHHhcCCCCC---
Confidence 99999999999999999975 59999999999999999999999999999888765 5578999999999988765
Q ss_pred CCceeeEEEeeC
Q 005624 516 DCSWAPIFVRQS 527 (687)
Q Consensus 516 ~~~~~~v~v~~~ 527 (687)
.+++++|++
T Consensus 261 ---~v~v~vr~s 269 (270)
T d1f20a1 261 ---VVPCFVRGA 269 (270)
T ss_dssp ---EEEEEEECC
T ss_pred ---EEEEEEecC
Confidence 689999864
|
| >d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: NADPH-cytochrome p450 reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.5e-39 Score=310.32 Aligned_cols=158 Identities=48% Similarity=0.902 Sum_probs=149.3
Q ss_pred ccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecC
Q 005624 530 KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSRE 609 (687)
Q Consensus 530 ~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~ 609 (687)
+||.++++||||||+||||||||||||+|...++.+...++++||||||+++.|++|++||+.+.+++.++++++||||+
T Consensus 1 rlP~~~~~PiimIa~GTGIAPf~s~l~~r~~~~~~~~~~g~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~ 80 (160)
T d1ja1a3 1 RLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSRE 80 (160)
T ss_dssp CCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSSSEEEEEETTS
T ss_pred CcCcCCCCCEEEEEccHhHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCccccHHHHHHHHHHHHcCCCceeEEEeecc
Confidence 58999999999999999999999999999887766666789999999999877999999999999999999999999999
Q ss_pred CCCccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 610 GPTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 610 ~~~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
++++.|||+.+.++.+.+++++ +.+++||||||++.|+++|+++|.+|+.+.++++.++|++++++|+++|||++|||
T Consensus 81 ~~~~~yvq~~~~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~l~~~~r~~~dv~ 159 (160)
T d1ja1a3 81 QAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLNVW 159 (160)
T ss_dssp SSSCCCHHHHHHHTHHHHHHHHHTSCCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ccCccccchHHHHHHHHHHHHHhcCCcEEEEeCCCccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEecc
Confidence 8889999999999999999988 66899999998678999999999999999999999999999999999999999999
|
| >d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: Sulfite reductase flavoprotein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-37 Score=310.37 Aligned_cols=195 Identities=24% Similarity=0.408 Sum_probs=166.6
Q ss_pred ccccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCC
Q 005624 308 AVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDK 387 (687)
Q Consensus 308 ~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~ 387 (687)
.+|+..||+.|+|+.|++|++++++|+|+|||||+++++++|+|||||||+|+|+++.|++++++||+++++.+.++.
T Consensus 4 ~p~~~~~p~~a~v~~n~~Lt~~~~~~~~~hleldl~~~~~~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~~~~-- 81 (221)
T d1ddga1 4 SPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEG-- 81 (221)
T ss_dssp CCCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEETT--
T ss_pred CCCCCCCCEEEEEEeEEEecCCCCCceEEEEEEEcCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCcccccccCC--
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999887641
Q ss_pred CCCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCCh---------------------hHHHHHHHhcCCCHHHHHHhCCC
Q 005624 388 EDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK---------------------DEYAQWIVASQRSLLEVMSEFPS 446 (687)
Q Consensus 388 ~~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k---------------------~~y~~~i~~~~~~l~dvl~~fps 446 (687)
.++|++++|++|+||..++++ +.+.+|... +. ++.|.+||+
T Consensus 82 ---------------~~~~l~~~l~~~~di~~~~~~~l~~~a~~~~~~~~~~~~~d~~~~~~~~~~--~~-~~~l~~~~~ 143 (221)
T d1ddga1 82 ---------------KTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAAT--TP-IVDMVRFSP 143 (221)
T ss_dssp ---------------EEEEHHHHHHHHBCCSCCCHHHHHHHHHHHTCTTTGGGTTCTHHHHHHHHH--SC-HHHHHHHSC
T ss_pred ---------------CcccHHHHhcccccccCCcHHHHHHHHHhcCCHHHhhccCCHHHHHHHhcc--cc-hhHHhhccc
Confidence 157899999999999865533 344555432 34 455567999
Q ss_pred CCCChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEe
Q 005624 447 AKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 525 (687)
Q Consensus 447 ~~~p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~ 525 (687)
+++|++.|++. +|+|+||+|||||||..++++++|||++|.+.+ .|+.+.|+||+||.+ +.+|+ +++|+++
T Consensus 144 ~~~pl~~ll~~-lp~l~PR~YSIsSSp~~~p~~i~ltv~vv~~~~-~~~~r~GvcS~~L~~~l~~g~------~V~v~ir 215 (221)
T d1ddga1 144 AQLDAEALINL-LRPLTPRLYSIASSQAEVENEVHVTVGVVRYDV-EGRARAGGASSFLADRVEEEG------EVRVFIE 215 (221)
T ss_dssp CCCCHHHHHHH-SCBCCCEEEEBCCCTTTSCSEEEEEEEECEEEE-TTEEEECHHHHHHHHSCCSSC------EEEEEEE
T ss_pred CCCCHHHHHHh-hhccCceeeeeccccccCCCeeeEEEEEEEeeC-CCCccceecHHHHHhhCCCCC------EEEEEEe
Confidence 99999999975 599999999999999999999999999998865 478899999999986 54443 6899999
Q ss_pred eC-Ccc
Q 005624 526 QS-NFK 530 (687)
Q Consensus 526 ~~-~F~ 530 (687)
.+ +|+
T Consensus 216 ~s~~FR 221 (221)
T d1ddga1 216 HNDNFR 221 (221)
T ss_dssp CCTTSC
T ss_pred cCCCCC
Confidence 75 575
|
| >d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: NADPH-cytochrome p450 reductase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.3e-35 Score=285.04 Aligned_cols=160 Identities=40% Similarity=0.727 Sum_probs=140.9
Q ss_pred ccCCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHH
Q 005624 101 DDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA 180 (687)
Q Consensus 101 ~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~ 180 (687)
....++|+|+|||||||||.+|+.|+++|.+.+ ..+.++++++++.++.... ...+++.+||++||||+|++|+|++
T Consensus 12 ~~~~k~i~IlygS~tGnae~~A~~l~~~l~~~g--~~~~~~~~~~~~~~~l~~~-~~~~~~~~i~~~ST~g~G~~P~n~~ 88 (177)
T d1ja1a2 12 KKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYG--MRGMSADPEEYDLADLSSL-PEIDKSLVVFCMATYGEGDPTDNAQ 88 (177)
T ss_dssp HHHTCCEEEEEECSSSHHHHHHHHHHHHGGGGT--CCEEEECGGGSCGGGGGGG-GGSTTCEEEEEEEEETTTEECGGGH
T ss_pred hccCCeEEEEEECCchHHHHHHHHHHHHHHHCC--CceEEeeccccchhhhhhh-hccccceEEEEEeccCCCCCCHhHH
Confidence 345689999999999999999999999998776 4567889999986542211 1235678999999999999999999
Q ss_pred HHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHH
Q 005624 181 RFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 260 (687)
Q Consensus 181 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L 260 (687)
+|++||++. ...|++++||||||||+.|++||.++++++++|+++||++++|+|++|++.+.+++|+.|.+++|++|
T Consensus 89 ~F~~~L~~~---~~~l~~~~yaVfGlGds~Y~~Fc~a~~~l~~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L 165 (177)
T d1ja1a2 89 DFYDWLQET---DVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAV 165 (177)
T ss_dssp HHHHHHHHC---CCCCTTCEEEEEEEECSSSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---cccccCceEEEEecCCccHHHHHHHHHHHHHHHHHcCCcEEEcceeecCCCCcHHHHHHHHHHHHHHH
Confidence 999999864 34589999999999999999999999999999999999999999999998889999999999999999
Q ss_pred HhhhCC
Q 005624 261 DNLLRD 266 (687)
Q Consensus 261 ~~~~~~ 266 (687)
++.+..
T Consensus 166 ~~~~~~ 171 (177)
T d1ja1a2 166 CEFFGV 171 (177)
T ss_dssp HHHHTC
T ss_pred HHHcCC
Confidence 998854
|
| >d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: Sulfite reductase alpha-component CysJ N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.7e-35 Score=274.99 Aligned_cols=144 Identities=31% Similarity=0.458 Sum_probs=131.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHH
Q 005624 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWF 186 (687)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L 186 (687)
|+|+|||||||||++|+.|+++|.+++ ..+++.|++++++ +++.+++.+||++||||+|++|+|++.|+++|
T Consensus 1 I~I~ygS~tGnae~~A~~l~~~l~~~g--~~~~~~~~~~~~~------~~l~~~~~~i~~~sT~g~G~~P~~~~~f~~~l 72 (146)
T d1ykga1 1 ITIISASQTGNARRVAEALRDDLLAAK--LNVKLVNAGDYKF------KQIASEKLLIVVTSTQGEGEPPEEAVALHKFL 72 (146)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHHT--CCCEEEEGGGCCG------GGGGGCSEEEEEEECBGGGBCCGGGHHHHHHH
T ss_pred CEEEEECCchHHHHHHHHHHHHHHHCC--CCceEeeccccch------hhcccccceEEEEeecCCCcCchhHHHHHHHH
Confidence 589999999999999999999999886 4578999999985 45788999999999999999999999999999
Q ss_pred HhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHh
Q 005624 187 TEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (687)
Q Consensus 187 ~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (687)
.... .+.|++++||||||||+.|++||.++|+++++|+++||++++|++++|+ +.+++|++|.+++|++|+.
T Consensus 73 ~~~~--~~~l~~~~~aVfGlGds~Y~~Fc~~~~~l~~~l~~lGa~~i~~~~~~D~--~~e~~~~~W~~~~~~~L~~ 144 (146)
T d1ykga1 73 FSKK--APKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADV--EYQAAASEWRARVVDALKS 144 (146)
T ss_dssp TSTT--CCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCEEECT--TCHHHHHHHHHHHHHHHHT
T ss_pred Hccc--ccccCCCeEEEEcCcchhHHHHHHHHHHHHHHHHHCCCcEeeCceecCC--CCHHHHHHHHHHHHHHHHh
Confidence 7543 3469999999999999999999999999999999999999999999986 4589999999999999975
|
| >d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: Nitric oxide (NO) synthase FMN domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=4.5e-33 Score=275.15 Aligned_cols=156 Identities=27% Similarity=0.518 Sum_probs=139.3
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHH
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F 182 (687)
++.+|+|+|||+|||||++|+.|++.+.+ + ..+++.++++++++ .+.+++.+||++||||+|+||+|++.|
T Consensus 2 ~~~ki~I~YgS~TG~te~~A~~la~~l~~-~--~~~~v~~~~~~~~~------~l~~~~~~i~~~sT~g~Ge~p~~~~~f 72 (202)
T d1tlla2 2 KRVKATILYATETGKSQAYAKTLCEIFKH-A--FDAKAMSMEEYDIV------HLEHEALVLVVTSTFGNGDPPENGEKF 72 (202)
T ss_dssp CSCEEEEEEECSSSHHHHHHHHHHHHHTT-T--SEEEEEETTTSCTT------SGGGCSEEEEEECCBTTTBCCGGGHHH
T ss_pred CCCcEEEEEECCchHHHHHHHHHHHHHhC-C--CCcEEechhhCCHH------HhccccceEEeccccCCCCCChhHHHH
Confidence 46789999999999999999999998853 3 56789999999863 578899999999999999999999999
Q ss_pred HHHHHhhcC---------------------------------------CCCCcCCceEEEEeccCCchHHHHHHHHHHHH
Q 005624 183 YKWFTEQKE---------------------------------------GGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDE 223 (687)
Q Consensus 183 ~~~L~~~~~---------------------------------------~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~ 223 (687)
++||.+.+. ....|++++||||||||+.|++||.+++++|+
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~faV~GlGds~y~~Fc~~ak~ld~ 152 (202)
T d1tlla2 73 GCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAVDT 152 (202)
T ss_dssp HHHHHHHTC-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTSSSTTHHHHHHHH
T ss_pred HHHHHhcccccccccccccccccccccccccchhhhccccccccccccccchhcCceeEEEccCcccHHHHhhhHHHHHH
Confidence 999986432 12368999999999999999999999999999
Q ss_pred HHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhhhCCC
Q 005624 224 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDD 267 (687)
Q Consensus 224 ~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~~~ 267 (687)
+|.++||+|++|+|++|+..+.|++|+.|+++||++|.+.++..
T Consensus 153 ~l~~LGA~ri~~~g~~D~~~~~e~~~~~W~~~l~~~l~~~~~~~ 196 (202)
T d1tlla2 153 LLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVG 196 (202)
T ss_dssp HHHHTTCEESSCCEEEETTTTHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHhCCCcccccchhccCCCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999888889999999999999999988543
|
| >d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: Neuronal nitric-oxide synthase FAD/NADP+ domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.98 E-value=4.3e-32 Score=259.44 Aligned_cols=159 Identities=38% Similarity=0.732 Sum_probs=141.2
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhh-hcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEE
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ-EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 606 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~-~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~af 606 (687)
+|+||.++++|+||||+|||||||+|||+++.... ..+...+++++|||||+...+++|.+|++++.+.+.++++++++
T Consensus 1 sF~Lp~~~~~plvlIa~GtGIaP~~s~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 80 (165)
T d1f20a2 1 SFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAY 80 (165)
T ss_dssp TSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSEEEEEEEE
T ss_pred CCCCCCCCCCCEEEEEcchhHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeccccHHHHHHHHHHHHHHhcCCceEEEEEE
Confidence 59999999999999999999999999999987643 23445578999999999876789999999999999988999999
Q ss_pred ecCCC-Cccccchhhhcc-hHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeE
Q 005624 607 SREGP-TKEYVQHKMMEK-SSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYL 683 (687)
Q Consensus 607 Sr~~~-~k~yVq~~l~e~-~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~ 683 (687)
||+.. ...|+++.+.+. .+.+++.+ ..++.||+||| ++|+++|.++|.+|+.+.++++.++|++++++|+++|||+
T Consensus 81 sr~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~yiCGp-~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~r~~ 159 (165)
T d1f20a2 81 SREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYH 159 (165)
T ss_dssp SSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEEC-HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEE
T ss_pred eccccCCCCcccchHHHHHHHHHHhhccCCCcEEEEECC-cchHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEE
Confidence 99754 567888888765 45666665 57899999999 8999999999999999999999999999999999999999
Q ss_pred EeeC
Q 005624 684 RDVW 687 (687)
Q Consensus 684 ~Dvw 687 (687)
+|||
T Consensus 160 ~ev~ 163 (165)
T d1f20a2 160 EDIF 163 (165)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 9999
|
| >d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: FMN-binding domain of the cytochrome P450bm-3 species: Bacillus megaterium [TaxId: 1404]
Probab=99.97 E-value=2e-32 Score=258.48 Aligned_cols=149 Identities=29% Similarity=0.598 Sum_probs=129.1
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
+.+|+|+|||||||||++|+.|++.+.+.+ ..+.+.+++++. ..+..+.++||++ |+|+|++|+|+.+|+
T Consensus 1 ntpi~I~ygS~tGnae~~A~~l~~~l~~~g--~~~~v~~~~~~~-------~~~~~~~~i~~~s-tt~~G~~p~~~~~f~ 70 (152)
T d1bvyf_ 1 NTPLLVLYGSNMGTAEGTARDLADIAMSKG--FAPQVATLDSHA-------GNLPREGAVLIVT-ASYNGHPPDNAKQFV 70 (152)
T ss_dssp CCCEEEEEECSSSHHHHHHHHHHHHHHTTT--CCCEEEEGGGST-------TCCCSSSEEEEEE-CCBTTBCCTTTHHHH
T ss_pred CCcEEEEEECCchHHHHHHHHHHHHHHhCC--CCceeccchhhh-------hhhhhccceEEEe-ccccCCCcccHHHHH
Confidence 357999999999999999999999999876 446788887654 2356666655555 555899999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHh
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (687)
++|.+.. ...+++++||||||||++| ++||.++++++++|+++||+|++|+|++|+..+.|++|++|.++||++|.+
T Consensus 71 ~~l~~~~--~~~~~~~~~aV~GlGds~Y~~~fc~~~~~ld~~l~~lGA~~i~~~~~~D~~~~~e~~~~~W~~~l~~~L~~ 148 (152)
T d1bvyf_ 71 DWLDQAS--ADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAA 148 (152)
T ss_dssp HHHHTCC--SSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcc--hhhccCceeeeeeccccchhhhhhhHHHHHHHHHHHcCCeEeECceeecCCCCcHHHHHHHHHHHHHHHHH
Confidence 9998643 3468999999999999999 589999999999999999999999999998878999999999999999998
Q ss_pred hh
Q 005624 263 LL 264 (687)
Q Consensus 263 ~~ 264 (687)
.+
T Consensus 149 ~~ 150 (152)
T d1bvyf_ 149 YF 150 (152)
T ss_dssp HS
T ss_pred Hc
Confidence 76
|
| >d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: Sulfite reductase flavoprotein species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.1e-31 Score=252.99 Aligned_cols=153 Identities=42% Similarity=0.839 Sum_probs=140.1
Q ss_pred cCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCC
Q 005624 531 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 610 (687)
Q Consensus 531 lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~ 610 (687)
||.|+++|+||||+|||||||+|||+++...... +++++|||||+...|++|.+|++.+.+++.++++++++||+.
T Consensus 1 LP~d~~~plvlIa~GtGIaP~~s~l~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~s~~~ 76 (153)
T d1ddga2 1 LPANPETPVIMIGPGTGIAPFRAFMQQRAADEAP----GKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQ 76 (153)
T ss_dssp CCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTCC----SCEEEEEEESCHHHHCTTHHHHHHHHHTTSCCEEEEEETTSS
T ss_pred CCcCCCCCEEEEECchhHHHHHHHHHHHHHhcCC----CceEEeecccCcHHHHHhHHHHHHHHHcCCCceEEEEEEecc
Confidence 6889999999999999999999999998876532 678888888776668999999999999999999999999998
Q ss_pred CCccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 611 PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 611 ~~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
....|+++.+..+...++..+..++++|+||+.+.|+++|+++|.+++.+.++++.++|++++++|+++|||++|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yiCG~p~~~~~~v~~~L~~~~~~~~~~~~e~a~~~~~~l~~~gR~~~e~~ 153 (153)
T d1ddga2 77 KEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 153 (153)
T ss_dssp SSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECTTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cCcccccchHHHHHHHHHhhhccCCEEEEECCCcchHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEecC
Confidence 88899999999998888888888999999998566789999999999999999999999999999999999999999
|
| >d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.96 E-value=4.3e-29 Score=236.46 Aligned_cols=152 Identities=28% Similarity=0.555 Sum_probs=130.2
Q ss_pred ccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhc-CCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEe
Q 005624 530 KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFS 607 (687)
Q Consensus 530 ~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~-~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afS 607 (687)
.||.|+++|+||||+|||||||+|||++++.+... ....++++||||+|+.+ |++|.+|+.++.+.+. ...+.+++|
T Consensus 2 ~LP~d~~~plilIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~-d~~y~~e~~~~~~~~~~~~~~~~~~s 80 (160)
T d1fnda2 2 LMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKAPDNFRLDFAVS 80 (160)
T ss_dssp CCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSCCBTTBCCCSEEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEEEET
T ss_pred CCCCCCCCCEEEEECchhHHHHHHHHHHHHHhhcccccCCceEEEEeecCcHH-HHHHHHHHHHHHHhcCCceeEEEEEc
Confidence 48999999999999999999999999999865432 22346899999999997 9999999999998875 446677788
Q ss_pred cCC----CCccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCe
Q 005624 608 REG----PTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRY 682 (687)
Q Consensus 608 r~~----~~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy 682 (687)
|+. ..+.|+++.+..+...+++++ ..+++|||||| ++|+++|.++|.+++...+. .|++++++|+++|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyiCGp-~~m~~~v~~~l~~~~~~~g~----~a~~~~~~l~~~~ry 155 (160)
T d1fnda2 81 REQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAAEGI----DWIEYKRQLKKAEQW 155 (160)
T ss_dssp TTCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEEC-HHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHTTCE
T ss_pred cchhccCCCcceehhhHHHHHHHHHHhhccCCCEEEEeCC-HHHHHHHHHHHHHHHHhcch----hHHHHHHHHHHcCCe
Confidence 763 267899999999998888876 67899999998 99999999999999977642 477899999999999
Q ss_pred EEeeC
Q 005624 683 LRDVW 687 (687)
Q Consensus 683 ~~Dvw 687 (687)
++|||
T Consensus 156 ~~e~~ 160 (160)
T d1fnda2 156 NVEVY 160 (160)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99999
|
| >d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Desulfovibrio vulgaris [TaxId: 881]
Probab=99.96 E-value=1.3e-29 Score=237.70 Aligned_cols=143 Identities=24% Similarity=0.302 Sum_probs=125.7
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCC--CCCchHHHHH
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDG--EPTDNAARFY 183 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G--~~pdna~~F~ 183 (687)
+|+|+|||+|||||++|+.|++.+.+.+ ..++++++++++..+ .+..++++||++||||+| ++|+++..|+
T Consensus 2 kv~I~Y~S~tG~te~~A~~i~~~l~~~g--~~v~~~~~~~~~~~~-----~~~~~~~vii~~sT~g~g~~~~~~~~~~f~ 74 (147)
T d1f4pa_ 2 KALIVYGSTTGNTEYTAETIARELADAG--YEVDSRDAASVEAGG-----LFEGFDLVLLGCSTWGDDSIELQDDFIPLF 74 (147)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHHHT--CEEEEEEGGGCCSTT-----TTTTCSEEEEEECEECSSSCEECTTTHHHH
T ss_pred cEEEEEECCChhHHHHHHHHHHHHHHCC--CeEEEEeccccchhh-----hhcccCeEEEEecccCCcCCChhhhHHHhh
Confidence 6899999999999999999999999987 567889999887632 245688999999999987 5688999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCC-CCcHHhHHHHHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPEL 260 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~-~~~e~~f~~W~~~l~~~L 260 (687)
+.|... .|++++|+||||||++|++||.++++++++|+++||+++.|.++.|.+ ...+++|..|.++|+.+|
T Consensus 75 ~~l~~~-----~l~~~~~avfGlGds~y~~f~~a~~~l~~~l~~lGa~~v~~~~~~d~~~~~~~~~~~~W~~~l~~al 147 (147)
T d1f4pa_ 75 DSLEET-----GAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI 147 (147)
T ss_dssp HTGGGS-----CCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEESCGGGGHHHHHHHHHHHHTTC
T ss_pred hccccc-----cccCCcEEEEecCCccHHHHhHHHHHHHHHHHhCCCEEeeCCEEEecCCccchHHHHHHHHHHHHhC
Confidence 888653 589999999999999999999999999999999999999999988865 357889999999998653
|
| >d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Maize (Zea mays), root isoform [TaxId: 4577]
Probab=99.95 E-value=2.4e-28 Score=230.00 Aligned_cols=148 Identities=31% Similarity=0.540 Sum_probs=125.5
Q ss_pred CCCCCeEEEecCCcchhHHHHHHHHHHhhhc-CCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEEEEecCCC
Q 005624 534 DAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP 611 (687)
Q Consensus 534 ~~~~PiImIa~GTGIAPfrsflq~r~~~~~~-~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~afSr~~~ 611 (687)
|+++|+||||+|||||||+|||++++.+... ....++++||||||+.. |++|.+|+.++.+++. .+.+..+++++..
T Consensus 1 Dp~~plllIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~-d~~y~~e~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
T d1jb9a2 1 DPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD-SLLYDEEFTSYLKQYPDNFRYDKALSREQK 79 (154)
T ss_dssp CTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGG-GCSSHHHHHHHHHHCTTTEEEEEEETTTCC
T ss_pred CCCCCEEEEEcceeHHHHHHHHHHHHHhccccccCCceEEEEEEecccc-hhHHHHHHHHHHHhCCCCEEEEEEeccCCc
Confidence 5679999999999999999999999865422 22346899999999996 9999999999998865 4456667776532
Q ss_pred ----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005624 612 ----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 687 (687)
Q Consensus 612 ----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dvw 687 (687)
.+.|+++.+....+.+..++..++.+||||| ++|+++|.++|.+++.+.+. .|++++++|+++|||++|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp-~~mm~~v~~~L~~~~~~~g~----~~~~~~~~l~~~~r~~~d~w 154 (154)
T d1jb9a2 80 NRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGL-KGMMPGIQDTLKKVAERRGE----SWDQKLAQLKKNKQWHVEVY 154 (154)
T ss_dssp ----CCCCHHHHHHHTHHHHHHHHHTTCEEEEEEC-GGGHHHHHHHHHHHHHHHTC----CHHHHHHHHHHTTCEEEEEC
T ss_pred CcCCcccccchHHHHhHHHhhhcccCCCEEEEECC-HHHHHHHHHHHHHHHHHcCc----hHHHHHHHHHHCCCEEEecC
Confidence 4678899998888888888888999999999 89999999999999988853 37789999999999999999
|
| >d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Chondrus crispus [TaxId: 2769]
Probab=99.94 E-value=1.2e-27 Score=230.01 Aligned_cols=146 Identities=26% Similarity=0.400 Sum_probs=118.3
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCC-CCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDD-YADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~-~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
||.|+|||||||||.+|++|++++.+.+.. .+++.+ .++ +.+.+++.+||++||||+|++|+++..||.
T Consensus 1 KI~I~YgS~TGnTe~vA~~Ia~~l~~~~~~----~v~~~~~~~~------~~l~~~d~li~g~sT~g~Ge~p~~~~~~~~ 70 (173)
T d2fcra_ 1 KIGIFFSTSTGNTTEVADFIGKTLGAKADA----PIDVDDVTDP------QALKDYDLLFLGAPTWNTGADTERSGTSWD 70 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGGGBCC----CEEGGGCSCG------GGGGGCSEEEEEEECCSTTCSSCCSCSTHH
T ss_pred CEEEEEECCchHHHHHHHHHHHHHhhcCCC----eEEEeccchh------hccccCCeEEEEEeccCCCCCchhHHHHHH
Confidence 689999999999999999999999876521 223322 222 357889999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCc--hHHHHHHHHHHHHHHHHcCCccccc---------------------cccccC
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQ--YEHFNKIAKVVDEILANQGAKRLVP---------------------VGLGDD 241 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~--Y~~f~~~ak~ld~~L~~lGa~~l~~---------------------~g~gD~ 241 (687)
++.....+...|++++||||||||+. |++||.+++.++++|+++||++|.. +.+.++
T Consensus 71 ~l~~~~~~~~~l~gk~~avFGlGD~~~y~~~F~~a~~~l~~~l~~~GA~~IG~~~~~gy~f~~s~a~~~~~f~gL~lD~d 150 (173)
T d2fcra_ 71 EFLYDKLPEVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGLPLDMV 150 (173)
T ss_dssp HHHHHTGGGCCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSCCTTEETTEESSEEEETT
T ss_pred HHhhccccCCCCCCCeEEEEEecCCCcchhhHHHHHHHHHHHHHhCCCEEecccCCCCcccccChhhcCCcccccccccc
Confidence 98643334457999999999999998 5999999999999999999999844 333333
Q ss_pred CC--CcHHhHHHHHHHHHHHHH
Q 005624 242 DQ--CIEDDFSAWRELVWPELD 261 (687)
Q Consensus 242 ~~--~~e~~f~~W~~~l~~~L~ 261 (687)
++ -.+++++.|.++|.+++.
T Consensus 151 n~~~~t~~ri~~W~~~l~~e~g 172 (173)
T d2fcra_ 151 NDQIPMEKRVAGWVEAVVSETG 172 (173)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHT
T ss_pred ccchhhHHHHHHHHHHHHHHhC
Confidence 33 357889999999988763
|
| >d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Probab=99.94 E-value=1.2e-26 Score=219.34 Aligned_cols=151 Identities=27% Similarity=0.517 Sum_probs=126.5
Q ss_pred cCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhc-----CCCCCcEEEEEeeccCCcccccHHHHHHHHHcCC-CcEEEE
Q 005624 531 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA-----GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIV 604 (687)
Q Consensus 531 lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~-----~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~-~~~l~~ 604 (687)
||.|+++|+||||+|||||||+|||++++..... ....++++||||||+.+ |.+|.+|+.++..... ...+++
T Consensus 1 lP~d~~~~~llIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~~~L~~g~r~~~-d~~~~~e~~~~~~~~~~~~~~~~ 79 (162)
T d2bmwa2 1 LPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTP-NILYKEELEEIQQKYPDNFRLTY 79 (162)
T ss_dssp CCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEE
T ss_pred CCcCCCCCEEEEEcceeHHHHHHHHHHHHHccccccccccCcCCCEEEEEecCchh-HHHHHHHHHHHHHhcCCceEEEE
Confidence 6889999999999999999999999998754321 22347899999999997 9999999999887765 456777
Q ss_pred EEecCCC----CccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 005624 605 AFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMT 679 (687)
Q Consensus 605 afSr~~~----~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~ 679 (687)
++++... .+.|+++...+..+.++..+ ..++.|||||| ++|+++|.++|.++..+.+.. +++++++|++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~g~~~~~~----~~~~~~~l~~~ 154 (162)
T d2bmwa2 80 AISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGP-PPMEEGIDAALSAAAAKEGVT----WSDYQKDLKKA 154 (162)
T ss_dssp EETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTTCC----HHHHHHHHHHT
T ss_pred EeecccccccCCcchhhhhHHHHHHHHhhhcccCCCEEEEECC-HHHHHHHHHHHHHhhcccCcc----HHHHHHHHHHC
Confidence 7777542 56788888888888887765 57889999999 899999999999998766533 56799999999
Q ss_pred CCeEEeeC
Q 005624 680 GRYLRDVW 687 (687)
Q Consensus 680 gRy~~Dvw 687 (687)
|||++|||
T Consensus 155 ~r~~~e~~ 162 (162)
T d2bmwa2 155 GRWHVETY 162 (162)
T ss_dssp TCEEEEEC
T ss_pred CCeEEecC
Confidence 99999999
|
| >d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Azotobacter vinelandii [TaxId: 354]
Probab=99.94 E-value=7e-28 Score=232.54 Aligned_cols=146 Identities=22% Similarity=0.391 Sum_probs=118.0
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
.||.|+|||||||||.+|+.|++.+...+. +++++++++++ +++.+++.+||++||||+|++|+|+..|++
T Consensus 1 aKI~I~YgS~tGnte~vA~~ia~~l~~~~~---~~v~~~~~~~~------~~l~~~d~~i~~~sT~G~Ge~Pd~~~~f~~ 71 (179)
T d1yoba1 1 AKIGLFFGSNTGKTRKVAKSIKKRFDDETM---SDALNVNRVSA------EDFAQYQFLILGTPTLGEGELPGLSSDAEN 71 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCTTTB---CCCEEGGGCCH------HHHHTCSEEEEEEECBTTTBCSSGGGTCSS
T ss_pred CeEEEEEECCchhHHHHHHHHHHHHhhCCC---ceEEeccccCh------hhccCcCEEEEEecccCCCCCCchhHHHHH
Confidence 379999999999999999999998876542 46788888774 457889999999999999999999987753
Q ss_pred -----HHHhhcCCCCCcCCceEEEEeccCCch--HHHHHHHHHHHHHHHHcCCccccc-------------------ccc
Q 005624 185 -----WFTEQKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVP-------------------VGL 238 (687)
Q Consensus 185 -----~L~~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~ak~ld~~L~~lGa~~l~~-------------------~g~ 238 (687)
++.+. ....|++++||||||||+.| ++||.+++.++++|+++||++|.. +|+
T Consensus 72 ~~w~~~~~~~--~~~~l~g~~~avfGlGDs~~~~~~Fc~a~~~l~~~l~~~GA~~iG~~~~~gy~f~~s~a~~~~~f~GL 149 (179)
T d1yoba1 72 ESWEEFLPKI--EGLDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFVGL 149 (179)
T ss_dssp CCHHHHHHHH--TTCCCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSBSSE
T ss_pred HHHHHHHhhc--cccccCCcEEEEEEecCCcccchhHHHHHHHHHHHHHhCCCeEeeccCCCCcccccchhccCCceeee
Confidence 23332 23469999999999999984 899999999999999999999854 233
Q ss_pred c-c-CCCC--cHHhHHHHHHHHHHHHH
Q 005624 239 G-D-DDQC--IEDDFSAWRELVWPELD 261 (687)
Q Consensus 239 g-D-~~~~--~e~~f~~W~~~l~~~L~ 261 (687)
+ | +++. .+++++.|.++|++++.
T Consensus 150 ~lD~dnq~~~t~~ri~~W~~~l~~e~~ 176 (179)
T d1yoba1 150 ALDLDNQSGKTDERVAAWLAQIAPEFG 176 (179)
T ss_dssp EECTTTCGGGHHHHHHHHHHHHGGGGT
T ss_pred eccccCchhhhHHHHHHHHHHHHHHhC
Confidence 2 2 3332 57889999999877653
|
| >d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC 7942 [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Synechococcus elongatus PCC 7942 [TaxId: 1140]
Probab=99.93 E-value=5e-27 Score=224.84 Aligned_cols=142 Identities=22% Similarity=0.377 Sum_probs=121.9
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
.||.|+|||+|||||.+|+.|++.+...+ . +++.+++++++ ..+.+++.+||++||||+|++|++++.|++
T Consensus 1 aKI~I~YgS~tGnTe~vA~~ia~~l~~~~--~-v~i~~~~~~~~------~~l~~~d~li~g~sT~g~Ge~p~~~~~f~~ 71 (169)
T d1czna_ 1 AKIGLFYGTQTGVTQTIAESIQQEFGGES--I-VDLNDIANADA------SDLNAYDYLIIGCPTWNVGELQSDWEGIYD 71 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTSTT--T-EEEEEGGGCCG------GGGGGCSEEEEECCEETTTEECHHHHHHGG
T ss_pred CcEEEEEECCCchHHHHHHHHHHHhhhCC--C-eeEEecccccc------ccccccCeEEEEecCCCCCCCcHHHHHHHh
Confidence 37999999999999999999999997665 2 68889988875 357889999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCc--hHHHHHHHHHHHHHHHHcCCcccccc-------------------ccc-cCC
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQ--YEHFNKIAKVVDEILANQGAKRLVPV-------------------GLG-DDD 242 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~--Y~~f~~~ak~ld~~L~~lGa~~l~~~-------------------g~g-D~~ 242 (687)
+|.+. .++++++++|||||+. |++||.+++.++++|+++||+++..+ |++ |++
T Consensus 72 ~l~~~-----~l~~k~~a~fglGd~~~~y~~F~~a~~~l~~~l~~~Ga~~ig~~~~~~y~~~~s~a~~~~~f~GL~lD~d 146 (169)
T d1czna_ 72 DLDSV-----NFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDED 146 (169)
T ss_dssp GGGGS-----CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTT
T ss_pred hhhcc-----cCCCceEEEEEecCCcccchhhhhHHHHHHHHHHhCCCceecCccCCCcccccchhccCCeEEeeecccc
Confidence 98764 5899999999999986 79999999999999999999999773 333 322
Q ss_pred -C--CcHHhHHHHHHHHHHHH
Q 005624 243 -Q--CIEDDFSAWRELVWPEL 260 (687)
Q Consensus 243 -~--~~e~~f~~W~~~l~~~L 260 (687)
+ -.+++++.|.++|++++
T Consensus 147 ~~~~~t~~ri~~W~~~l~~e~ 167 (169)
T d1czna_ 147 NQPDLTKNRIKTWVSQLKSEF 167 (169)
T ss_dssp TCGGGHHHHHHHHHHHHHHHT
T ss_pred CchhhhHHHHHHHHHHHHHHh
Confidence 2 24678999999998765
|
| >d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.2e-26 Score=223.50 Aligned_cols=141 Identities=26% Similarity=0.385 Sum_probs=119.8
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHH
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~ 185 (687)
+|.|+|||||||||.+|++|++++...+ +++.+++++++ +++.+++.+||++||||+|++|+++..|+..
T Consensus 2 ~vgIlYgS~TGnte~vA~~ia~~l~~~~----~~v~~~~~~~~------~~l~~~~~~i~~~sT~g~Ge~p~~~~~~~~~ 71 (175)
T d1ag9a_ 2 ITGIFFGSDTGNTENIAKMIQKQLGKDV----ADVHDIAKSSK------EDLEAYDILLLGIPTWYYGEAQCDWDDFFPT 71 (175)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHCTTT----EEEEEGGGCCH------HHHHTCSEEEEECCEETTTEECHHHHHHHHH
T ss_pred cEEEEEECCChHHHHHHHHHHHHhccCC----cEEEEccchhh------hccccccEEEEEecccCCCCCchHHHHHHhh
Confidence 5899999999999999999999997543 67889988875 4578899999999999999999999999998
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCch--HHHHHHHHHHHHHHHHcCCcccccc--------------------ccc-cCC
Q 005624 186 FTEQKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPV--------------------GLG-DDD 242 (687)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~ak~ld~~L~~lGa~~l~~~--------------------g~g-D~~ 242 (687)
+... .|++++||||||||+.| ++||.+++.++++|+++||+++... |++ |++
T Consensus 72 l~~~-----~l~~~~~avfglGd~~~~~~~F~~a~~~l~~~l~~~Ga~~iG~~~~~gy~f~~s~a~~~~~~~~gL~~D~d 146 (175)
T d1ag9a_ 72 LEEI-----DFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDED 146 (175)
T ss_dssp HTTC-----CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESSEEECTT
T ss_pred cccc-----ccCCCcEEEEEccCCchhhhHHHHHHHHHHHHHHhcCCEEecccCCCCcccccchhhccCCeeeeeeeccc
Confidence 8753 59999999999999985 8999999999999999999998552 221 222
Q ss_pred -CC--cHHhHHHHHHHHHHHHH
Q 005624 243 -QC--IEDDFSAWRELVWPELD 261 (687)
Q Consensus 243 -~~--~e~~f~~W~~~l~~~L~ 261 (687)
+. .+++++.|.++|+++|.
T Consensus 147 n~~~~t~~ri~~W~~~l~~e~~ 168 (175)
T d1ag9a_ 147 RQPELTAERVEKWVKQISEELH 168 (175)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHHHHhC
Confidence 21 45678999999998774
|
| >d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Anabaena, pcc 7119 and 7120 [TaxId: 1163]
Probab=99.91 E-value=1.2e-24 Score=208.53 Aligned_cols=141 Identities=23% Similarity=0.385 Sum_probs=121.0
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHH
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~ 184 (687)
|+|.|+|||+|||||.+|+.|++.+...+ +++.+++++++ +++.+++.+||++||||+|++|++++.|+.
T Consensus 2 KKI~I~YgS~tGnTe~vA~~I~~~l~~~~----~~v~~i~~~~~------~~l~~~d~~i~g~sT~g~G~~p~~~~~~~~ 71 (169)
T d1oboa_ 2 KKIGLFYGTQTGKTESVAEIIRDEFGNDV----VTLHDVSQAEV------TDLNDYQYLIIGCPTLNIGELQSDWEGLYS 71 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTTT----EEEEETTTCCG------GGGGGCSEEEEEEEEETTTEECHHHHHHHT
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccCC----ceEEEcccCCh------hhhccCCEEEEEEecCCCCCCChhHHHhhh
Confidence 78999999999999999999999996543 68899999886 458899999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCc--hHHHHHHHHHHHHHHHHcCCccccc-------------------cccc-cCC
Q 005624 185 WFTEQKEGGEWLQKLKYGVFGLGNRQ--YEHFNKIAKVVDEILANQGAKRLVP-------------------VGLG-DDD 242 (687)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~--Y~~f~~~ak~ld~~L~~lGa~~l~~-------------------~g~g-D~~ 242 (687)
.+.+. .++++++++||+||+. |++||.+++.+.++|.++||+.+.. +|++ |++
T Consensus 72 ~l~~~-----~l~~k~~a~fg~Gd~~~~~e~f~~a~~~l~~~l~~~g~~~ig~~~~~g~~f~~s~~~~~~~fiGl~lD~d 146 (169)
T d1oboa_ 72 ELDDV-----DFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDED 146 (169)
T ss_dssp TGGGC-----CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTT
T ss_pred hhccc-----CCCCCceeEEeccCCcchhhhHhhhHHHHHHHHHhcCCcccccccCCCccccccccccCCeEEecCcCcc
Confidence 88753 5899999999999986 6999999999999999999998865 2333 222
Q ss_pred C---CcHHhHHHHHHHHHHHH
Q 005624 243 Q---CIEDDFSAWRELVWPEL 260 (687)
Q Consensus 243 ~---~~e~~f~~W~~~l~~~L 260 (687)
. -.+++++.|.++|++++
T Consensus 147 ~~~e~t~eri~~Wv~~i~~e~ 167 (169)
T d1oboa_ 147 NQSDLTDDRIKSWVAQLKSEF 167 (169)
T ss_dssp TCGGGHHHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHh
Confidence 2 24688999999998876
|
| >d1rlja_ c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavoprotein NrdI domain: Flavoprotein NrdI species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=2.4e-24 Score=197.86 Aligned_cols=125 Identities=18% Similarity=0.177 Sum_probs=92.1
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
+..|.|+|||||||||+||++|+... .....+ .+...+.+||++||||+|++|+++++|+
T Consensus 8 ~~~i~I~Y~S~TGnae~~A~~l~~~~---------~~~~~~-----------~~~~~~~~ilitsT~G~Ge~P~~~~~F~ 67 (135)
T d1rlja_ 8 NAMVQIIFDSKTGNVQRFVNKTGFQQ---------IRKVDE-----------MDHVDTPFVLVTYTTNFGQVPASTQSFL 67 (135)
T ss_dssp HSCCEEEECCSSSHHHHHHTTSCCSE---------EEETTS-----------CSCCCSCEEEEECCBGGGBCCHHHHHHH
T ss_pred CCeEEEEEECCchhHHHHHHHHhhhh---------hccccc-----------ccccccceEEEecCCCCCCCCHHHHHHH
Confidence 45689999999999999998774211 111111 1233456899999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHh
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (687)
++|. +++|||||+||++| ++||.+++.++++| ++..+...-... ++...+.|..|.+++|..+..
T Consensus 68 ~~l~----------~~~~aV~G~Gd~~y~~~Fc~a~~~i~~~~---~~~~~~~~E~~g-~~~D~e~~~~~v~~~~~~~~~ 133 (135)
T d1rlja_ 68 EKYA----------HLLLGVAASGNKVWGDNFAKSADTISRQY---QVPILHKFELSG-TSKDVELFTQEVERVVTKSSA 133 (135)
T ss_dssp HHHG----------GGEEEEEEEECGGGGGGTTHHHHHHHHHH---TCCEEEEEETTC-CHHHHHHHHHHHHHHHHHHTT
T ss_pred Hhcc----------ccceEEEEeCCchHHHHHHHHHHHHHHHh---CCCceEeeecCC-CHHHHHHHHHHHHHHHHHHHc
Confidence 8775 47899999999999 79999999999987 555443322211 111257788999999887754
|
| >d1fuea_ c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Helicobacter pylori [TaxId: 210]
Probab=99.87 E-value=2.9e-23 Score=197.18 Aligned_cols=134 Identities=25% Similarity=0.388 Sum_probs=108.2
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHH
Q 005624 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (687)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~ 185 (687)
||.|+|||+|||||.+|++|++++.. +++++++++++ ..+.+++.+||++||||+|++|+|+..|++.
T Consensus 2 KI~I~YgS~tGnte~vA~~ia~~~~~------~~v~~i~~~~~------~~l~~~d~li~~~sT~g~G~~p~~~~~~~~~ 69 (163)
T d1fuea_ 2 KIGIFFGTDSGNAEAIAEKISKAIGN------AEVVDVAKASK------EQFNGFTKVILVAPTAGAGDLQTDWEDFLGT 69 (163)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHCS------EEEEEGGGCCH------HHHTTCSEEEEEEEBCGGGCBCHHHHHHHTT
T ss_pred eEEEEEECCCcHHHHHHHHHHHhcCC------CeEEehhhccc------hhhccCceEEEecccCCCCCCCHhHHHHHhh
Confidence 69999999999999999999997742 57889998885 4578899999999999999999999999987
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCch--HHHHHHHHHHHHHHHHcCCcccccc-------------------ccc--cCC
Q 005624 186 FTEQKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPV-------------------GLG--DDD 242 (687)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~ak~ld~~L~~lGa~~l~~~-------------------g~g--D~~ 242 (687)
+.+. .|++++||||||||+.| ++||.+...+... ..||+.+... |++ +|.
T Consensus 70 l~~~-----~l~g~~~avfglGd~~~~~~~f~~a~~~~~~~--~~ga~~vg~~~~~g~~~~~s~a~~~~~~vgl~lD~d~ 142 (163)
T d1fuea_ 70 LEAS-----DFANKTIGLVGLGDQDTYSETFAEGIFHIYEK--AKAGKVVGQTSTDGYHFAASKAVEGGKFVGLVIDEDN 142 (163)
T ss_dssp CCTH-----HHHTSEEEEEEECCTTTTTBSTTCHHHHHHHH--HTTSEECCCBCCTTCCCSBCTTBSSSSBSSEEECTTT
T ss_pred cccc-----cCCCCeEEEEEecCcccccccchhhhHHHHHH--hcCCccccccCCCCcccchhhhccCCEEEeccccccc
Confidence 7643 69999999999999974 7899998888664 4688876542 233 222
Q ss_pred CC--cHHhHHHHHHHHHH
Q 005624 243 QC--IEDDFSAWRELVWP 258 (687)
Q Consensus 243 ~~--~e~~f~~W~~~l~~ 258 (687)
+. .++++++|.++|.+
T Consensus 143 q~~~te~ri~~W~~~lk~ 160 (163)
T d1fuea_ 143 QDDLTDERIAKWVEQVRG 160 (163)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CccccHHHHHHHHHHHHH
Confidence 21 46789999887643
|
| >d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Methane monooxygenase component C, MmoC species: Methylococcus capsulatus [TaxId: 414]
Probab=99.84 E-value=6.7e-21 Score=176.46 Aligned_cols=119 Identities=18% Similarity=0.279 Sum_probs=98.4
Q ss_pred cccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEec
Q 005624 529 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 608 (687)
Q Consensus 529 F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr 608 (687)
|.|+++..+|+||||+|||||||+||+++....+. .++++||||+|+.+ |++|.+||+++.++...++++.+++|
T Consensus 1 F~l~~~~~~p~vliagGtGItP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~~ 75 (141)
T d1tvca2 1 FGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWTA----PNETRIYFGVNTEP-ELFYIDELKSLERSMRNLTVKACVWH 75 (141)
T ss_dssp CSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHTC----CSCEEEEEECSSST-TCCCHHHHHHHHHHSSSCEEEECCSS
T ss_pred CCCCCCCCCcEEEEECchhHHHHHHHHHHHHHcCC----CCceEEEeecccch-hhhhHHHHHHHHhhccccccceeecc
Confidence 78999999999999999999999999999876542 26899999999997 99999999999988777789999998
Q ss_pred CCC----CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 609 EGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 609 ~~~----~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
+.+ .++++++.+.++. . ....+..||+||| ++|+++|.+.|.+.
T Consensus 76 ~~~~~~~~~g~~~~~~~~~~---~-~~~~~~~vyiCGp-~~m~~~v~~~l~~~ 123 (141)
T d1tvca2 76 PSGDWEGEQGSPIDALREDL---E-SSDANPDIYLCGP-PGMIDAACELVRSR 123 (141)
T ss_dssp CSSCCSSSSSSSSHHHHHHH---H-HSSSSSEEEEESS-HHHHHHHHHHHHHH
T ss_pred cccCcCCccchhHHHHHHhc---c-cccccceeeccCC-HHHHHHHHHHHHHc
Confidence 643 4567777665531 1 1235678999999 99999999888654
|
| >d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Benzoate dioxygenase reductase species: Acinetobacter sp. [TaxId: 472]
Probab=99.82 E-value=1.6e-20 Score=171.99 Aligned_cols=113 Identities=27% Similarity=0.367 Sum_probs=94.5
Q ss_pred CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC--
Q 005624 534 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP-- 611 (687)
Q Consensus 534 ~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~-- 611 (687)
+.++|+||||+|||||||+|++++....+. ..+++||||+|+++ |++|.+||+++.++...++++.++++++.
T Consensus 3 d~~rplv~IAgG~GItP~~s~l~~~~~~~~----~~~i~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~ 77 (133)
T d1krha2 3 DVKRPVLMLAGGTGIAPFLSMLQVLEQKGS----EHPVRLVFGVTQDC-DLVALEQLDALQQKLPWFEYRTVVAHAESQH 77 (133)
T ss_dssp CCSSCEEEEEEGGGHHHHHHHHHHHHHHCC----SSCEEEEEEESSGG-GCCCHHHHHHHHHHCTTEEEEEEETTCCSSS
T ss_pred CCCCCEEEEEccHhHHHHHHHHHHHHHcCC----CCceEEEEeecchh-HHHHHHHHHHHHHhCCceeeeeeeecccccc
Confidence 457899999999999999999999876542 26899999999997 99999999999998888889999998653
Q ss_pred -CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 612 -TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 612 -~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
.++||++.+.+... + ..+..+||||| ++|+++|++.|.+.
T Consensus 78 ~~~g~v~~~i~~~~~---~--~~~~~vyiCGp-~~m~~~v~~~L~~~ 118 (133)
T d1krha2 78 ERKGYVTGHIEYDWL---N--GGEVDVYLCGP-VPMVEAVRSWLDTQ 118 (133)
T ss_dssp SEESCSGGGCCGGGG---G--GGCSEEEEEEE-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhhc---c--cccceEEEECC-HHHHHHHHHHHHHc
Confidence 45788888765421 1 35778999999 99999999988764
|
| >d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: NAD(P)H:flavin oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=3.9e-19 Score=162.82 Aligned_cols=111 Identities=18% Similarity=0.230 Sum_probs=90.6
Q ss_pred CCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCC-
Q 005624 533 ADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP- 611 (687)
Q Consensus 533 ~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~- 611 (687)
+|..+|+||||+|||||||+|++++++.... .++++||||+|+.+ |++|.+++.++..+...+.+.+..++...
T Consensus 2 ed~~rplv~IagGtGiaP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 76 (135)
T d1qfja2 2 DDEERPMILIAGGTGFSYARSILLTALARNP----NRDITIYWGGREEQ-HLYDLCELEALSLKHPGLQVVPVVEQPEAG 76 (135)
T ss_dssp SCSSSCEEEEEETTCHHHHHHHHHHHHHHCT----TCCEEEEEEESSGG-GCTTHHHHHHHHHHCTTEEEEEEESSCCTT
T ss_pred CCCCCCEEEEECceeHHHHHHHHHHHHHccc----ccceeEEEecccHh-HHHHHHHHHHHHHhcCccceeeeecccCcc
Confidence 4678999999999999999999999877543 26899999999997 99999999999988877777777777543
Q ss_pred ---CccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHH
Q 005624 612 ---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLH 655 (687)
Q Consensus 612 ---~k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~ 655 (687)
.++|+++.+.+. .. ..+..+||||| ++|+++|.+.|.
T Consensus 77 ~~~~~g~~~~~~~~~------~~~~~~~~~yvCGp-~~m~~~~~~~L~ 117 (135)
T d1qfja2 77 WRGRTGTVLTAVLQD------HGTLAEHDIYIAGR-FEMAKIARDLFC 117 (135)
T ss_dssp CCSEESCHHHHHHHH------CSCCTTCEEEEESC-HHHHHHHHHHHH
T ss_pred cccccCchHHHHHHh------ccCcccCceEeeCC-HHHHHHHHHHHH
Confidence 356777766543 12 25789999999 999999988774
|
| >d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Megasphaera elsdenii [TaxId: 907]
Probab=99.78 E-value=7.1e-19 Score=161.69 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=107.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchH-HHHHHH
Q 005624 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNA-ARFYKW 185 (687)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna-~~F~~~ 185 (687)
|.|+|+|+|||||++|+.|++.+.+.+ ..++++++.++++ +++.+++.+||++||||.|..|+++ ..|++.
T Consensus 2 V~IvY~S~tGnTe~~A~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~ii~g~pT~~~g~~p~~~~~~~~~~ 73 (137)
T d2fz5a1 2 VEIVYWSGTGNTEAMANEIEAAVKAAG--ADVESVRFEDTNV------DDVASKDVILLGCPAMGSEELEDSVVEPFFTD 73 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTT--CCEEEEETTSCCH------HHHHTCSEEEEECCCBTTTBCCHHHHHHHHHH
T ss_pred EEEEEECCChHHHHHHHHHHHHHHhcC--CceEEeehhhHHH------hhhhccceEEEEEecccCCcCChhHHHHHHHH
Confidence 789999999999999999999999876 4578999998875 3577899999999999999999875 567777
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHH
Q 005624 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELV 256 (687)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l 256 (687)
+.. .++++++++||+|+..|. .+.+.++++|+++|++.+.+....+...+. +....|-+.|
T Consensus 74 ~~~------~~~gk~~~~fgs~g~~~~---~a~~~l~~~l~~~G~~~v~~~~~~~~~~d~-~~~~e~g~~l 134 (137)
T d2fz5a1 74 LAP------KLKGKKVGLFGSYGWGSG---EWMDAWKQRTEDTGATVIGTAIVNEMPDNA-PECKELGEAA 134 (137)
T ss_dssp HGG------GCSSCEEEEEEEESSCCS---HHHHHHHHHHHHTTCEEEEEEEEESSSSSC-THHHHHHHHH
T ss_pred hcc------ccCCCeEEEEEecCCCcC---HHHHHHHHHHHHCCCEEeeceeecCCCChH-HHHHHHHHHH
Confidence 753 489999999999988774 456889999999999999987766554333 3455665444
|
| >d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=2.9e-19 Score=166.13 Aligned_cols=116 Identities=19% Similarity=0.265 Sum_probs=86.1
Q ss_pred CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcE-EEEEEecCCCC--
Q 005624 536 KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ-LIVAFSREGPT-- 612 (687)
Q Consensus 536 ~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~-l~~afSr~~~~-- 612 (687)
.++|||||+|||||||+||++++...+ ..++++||||||+.+ |++|.+|++++.++..... +..+.+++...
T Consensus 6 ~k~lvlIa~GtGiaP~~s~l~~~~~~~----~~~~v~l~~g~r~~~-d~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T d1fdra2 6 CETLWMLATGTAIGPYLSILRLGKDLD----RFKNLVLVHAARYAA-DLSYLPLMQELEKRYEGKLRIQTVVSRETAAGS 80 (148)
T ss_dssp CSEEEEEEEGGGGHHHHHHHHHCCSCT----TCSEEEEEEEESSGG-GCTTHHHHHHHHHHTTTSEEEEEEESSSCCTTE
T ss_pred CCEEEEEEcCeEHHHHHHHHHHHHHhC----CCCcEEEEEecCcHH-HHHHHHHhhhHHHhccccccccccccCcccccc
Confidence 478999999999999999999875543 237999999999997 9999999999988765444 45556665432
Q ss_pred -ccccchhhhcc--hHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 613 -KEYVQHKMMEK--SSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 613 -k~yVq~~l~e~--~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
.+++++.+... .+.+...+ .+++.|||||| ++|+++|.+.|.+.
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~e~ 128 (148)
T d1fdra2 81 LTGRIPALIESGELESTIGLPMNKETSHVMLCGN-PQMVRDTQQLLKET 128 (148)
T ss_dssp EESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEEC-HHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHhhccccccccceEEEECC-HHHHHHHHHHHHHh
Confidence 34445544432 12233223 46778999999 99999999988764
|
| >d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Flavohemoglobin, C-terminal domain domain: Flavohemoglobin, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=7.7e-19 Score=162.33 Aligned_cols=118 Identities=15% Similarity=0.222 Sum_probs=92.4
Q ss_pred CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCC-
Q 005624 534 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT- 612 (687)
Q Consensus 534 ~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~- 612 (687)
..++|+||||+|||||||+|+++++..... .++++||||+|+.+ |.+|.+|+.++.++...+.++.+++++.+.
T Consensus 4 ~~d~plv~IagGtGiaP~~s~l~~l~~~~~----~~~i~l~~~~r~~~-d~~~~~el~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T d1gvha3 4 ADDTPVTLISAGVGQTPMLAMLDTLAKAGH----TAQVNWFHAAENGD-VHAFADEVKELGQSLPRFTAHTWYRQPSEAD 78 (143)
T ss_dssp CTTCCEEEEEEGGGGHHHHHHHHHHHHHTC----CSCEEEEEEESCTT-TCCSHHHHHHHHHTSSSEEEEEEESSCCHHH
T ss_pred CCCCCEEEEEchhhHHHHHHHHHHHHHcCC----CceEEEEeecCCHH-HHHHHHHHHHHHHhCCceEEEEEEeccCccc
Confidence 346899999999999999999999877543 26899999999997 999999999999988777889999886531
Q ss_pred --ccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 613 --KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 613 --k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
+.++++......+.+.+.. .++..+|+||| ++|.++|.+.|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iCGp-~~m~~~v~~~L~~~ 125 (143)
T d1gvha3 79 RAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGP-VGFMQFTAKQLVDL 125 (143)
T ss_dssp HHHTCCSEESSCCGGGSSSCCCCTTCEEEEESC-HHHHHHHHHHHHHT
T ss_pred ccccceeeeccccHHHHHhcccccCcEEEEeCc-HHHHHHHHHHHHHc
Confidence 3344444333333333333 45789999999 99999998888764
|
| >d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Maize (Zea mays), root isoform [TaxId: 4577]
Probab=99.76 E-value=6.8e-19 Score=164.91 Aligned_cols=128 Identities=20% Similarity=0.249 Sum_probs=102.5
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCC
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (687)
.|..++|+.|+|+.++.|+..++.+.++||+||+++ ++.|++||.|+|+|+|... .
T Consensus 22 ~y~~~nP~~a~v~~n~~Lt~~~s~k~t~hie~dl~~-~~~y~~Gq~lgI~p~~~~~----------------------~- 77 (157)
T d1jb9a1 22 TYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENP----------------------K- 77 (157)
T ss_dssp SBBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTT-SSCCCTTCEEEEECSSBCT----------------------T-
T ss_pred cCCCCCCeEEEEEeEEEcccCCCCceEEEEEecCCC-CccEecCceEEEEcCCccc----------------------c-
Confidence 477899999999999999999999999999999976 8999999999999976310 0
Q ss_pred CCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccc
Q 005624 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYS 468 (687)
Q Consensus 389 ~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YS 468 (687)
..+.+++||+||
T Consensus 78 --------------------------------------------------------------------~~~~p~~~R~YS 89 (157)
T d1jb9a1 78 --------------------------------------------------------------------KPGAPQNVRLYS 89 (157)
T ss_dssp --------------------------------------------------------------------STTCBCCCEEEE
T ss_pred --------------------------------------------------------------------ccCccCCcCEEE
Confidence 011456799999
Q ss_pred cCCCCCCCCC---eEEEEEEEEEeeC----CCCccccCccchhhcccCCCCCCCCCceeeEEEeeC-CcccCCC
Q 005624 469 ISSSPRVAPS---RIHVTCALVYEKT----PTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPAD 534 (687)
Q Consensus 469 IsSsp~~~~~---~i~itv~~v~~~~----~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~-~F~lp~~ 534 (687)
|||||...+. .++++|+.+.+.+ ..|+.+.|+||+||+++.+|+ .+.|+++.| .|+||+|
T Consensus 90 IaSSp~~~~~~~~~~~~~V~~v~~~~~~~~~~~r~~~GvcS~yL~~lk~Gd------~V~i~gp~g~~F~lPed 157 (157)
T d1jb9a1 90 IASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGD------KIQLTGPSGKIMLLPEE 157 (157)
T ss_dssp BCSCTTTTTTSSSEEEEEEECCCCBCTTTCCBCGGGSCHHHHHHHTCCTTC------EEEEEEEECSTTCCCCS
T ss_pred ecCCCcCCCCCCCEEEEEEEEeeccccccccCCcccCceeehhhccCCCcC------EEEEEecCCCcccCCCC
Confidence 9999986654 4666665554332 357889999999999988876 578999976 5889875
|
| >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: ROO-like flavoprotein TM0755, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=8.9e-19 Score=163.18 Aligned_cols=145 Identities=17% Similarity=0.096 Sum_probs=114.6
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchh-HHHhccCCCeEEEEeeCCCCCCCCchHHH
Q 005624 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDE-YEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (687)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~-~~~~l~~~~~vi~~~sTyG~G~~pdna~~ 181 (687)
.+.+|+|+|+|+|||||.+|+.|+++|.+.+ ..++++++.+++.++.. ...++.+++.+||++|||+ |++|+.+..
T Consensus 2 ~~~kv~IiY~S~tGnTe~~A~~i~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~l~~~d~iiigspt~~-~~~~~~~~~ 78 (148)
T d1vmea1 2 KKGKVTVIYDSMYGFVENVMKKAIDSLKEKG--FTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYE-AEIHPLMRF 78 (148)
T ss_dssp CTTEEEEEEECSSSHHHHHHHHHHHHHHHTT--CEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECEET-TEECHHHHH
T ss_pred CCCEEEEEEECCCcHHHHHHHHHHHHHHhCC--CeEEEEecccccccchhHhhhhHHHCCEeEEEecccC-CccCchHHH
Confidence 4678999999999999999999999999876 56778888877754422 2356889999999999995 888888899
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHH
Q 005624 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 260 (687)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L 260 (687)
|+..+... .++++++++|| +|.+||.+++.+++.|+++|++++.+.... .....++.++.|.+.+-+.|
T Consensus 79 ~l~~~~~~-----~~~~k~~~~fg----s~g~~~~a~~~~~~~l~~~G~~~v~~~~~~-~~~~de~~~~e~~~~~~k~l 147 (148)
T d1vmea1 79 TLLEIIDK-----ANYEKPVLVFG----VHGWAPSAERTAGELLKETKFRILSFTEIK-GSNMDERKIEEAISLLKKEL 147 (148)
T ss_dssp HHHHHHHH-----CCCCCEEEEEE----ECCCCCCC-CCHHHHHHTSSCEEEEEEEEC-STTCCTHHHHHHHHHHHHHH
T ss_pred HHHHHhhc-----ccCCCEEEEEE----cCCCccchHHHHHHHHHHcCCcEEeeEEEe-CCCCCHHHHHHHHHHHHHhc
Confidence 99988764 48899999999 577899999999999999999988664322 22223566777777665544
|
| >d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Flavohemoglobin, C-terminal domain domain: Flavohemoglobin, C-terminal domain species: Alcaligenes eutrophus [TaxId: 106590]
Probab=99.75 E-value=2e-18 Score=159.16 Aligned_cols=116 Identities=24% Similarity=0.405 Sum_probs=88.6
Q ss_pred CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCCCC-
Q 005624 534 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT- 612 (687)
Q Consensus 534 ~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~~~- 612 (687)
|.++|+||||+|||||||+|++++..... ..+++|+||+|+++ |.+|.+++.++.+.....+++.+++++.+.
T Consensus 3 d~~~plvliagGtGIaP~~sil~~~~~~~-----~~~i~li~~~r~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (142)
T d1cqxa3 3 DAKTPIVLISGGVGLTPMVSMLKVALQAP-----PRQVVFVHGARNSA-VHAMRDRLREAAKTYENLDLFVFYDQPLPED 76 (142)
T ss_dssp TCCSCEEEEESSCCHHHHHHHHHHHTCSS-----CCCEEEEEEESCSS-SCHHHHHHHHHHHHCTTEEEEEEESSCCTTC
T ss_pred CCCCCEEEEEcceeHHHHHHHHHHHHHcC-----CCcEEEEeeccChh-hhhhHHHHHHHHHhCCCeEEEEEEcccCCcc
Confidence 56899999999999999999998765321 26899999999997 999999999999988888899999986531
Q ss_pred ---ccccchhhhcchHHHHhcc-cCCcEEEEECCchhhHHHHHHHHHHH
Q 005624 613 ---KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 657 (687)
Q Consensus 613 ---k~yVq~~l~e~~~~v~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i 657 (687)
..+...... ..+.+.+.+ ..++.+||||| ++|+++|.+.|.+.
T Consensus 77 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~ 123 (142)
T d1cqxa3 77 VQGRDYDYPGLV-DVKQIEKSILLPDADYYICGP-IPFMRMQHDALKNL 123 (142)
T ss_dssp CBTTTBSEESSC-CGGGSHHHHCCTTCEEEEESS-HHHHHHHHHHHHHT
T ss_pred cccccccchhhh-HHHHHHhhcccCCceEEEECC-hhHHHHHHHHHHHc
Confidence 122222111 122223322 46789999999 99999999988653
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Probab=99.71 E-value=2.4e-17 Score=153.91 Aligned_cols=147 Identities=16% Similarity=0.140 Sum_probs=119.3
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
+++|+|+|+|+|||||++|+.|++.+.+.+ ..+.++++.+.+.++ ....+.+++++||++||| .|.+++.+..|+
T Consensus 2 ~~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g--~ev~~~~~~~~~~~~--~~~~l~~~d~vi~Gspt~-~~~~~~~~~~~l 76 (152)
T d1e5da1 2 TNKVVIFYDSMWHSTEKMARVLAESFRDEG--CTVKLMWCKACHHSQ--IMSEISDAGAVIVGSPTH-NNGILPYVAGTL 76 (152)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEETTTSCHHH--HHHHHHTCSEEEEECCCB-TTBCCHHHHHHH
T ss_pred CCeEEEEEECCCcHHHHHHHHHHHHHhhCC--CEEEEeecccCChhh--hccchhhCCEEEEecccc-CCccCchhHHHH
Confidence 578999999999999999999999999875 567889998877532 234678899999999999 688888899999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCC--CCcHHhHHHHHHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDD--QCIEDDFSAWRELVWPELD 261 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~--~~~e~~f~~W~~~l~~~L~ 261 (687)
+.+... .++++.+++|| +|.++|.+.+.+++.|+++|++.+.+....+.. ....+...+|.+.|.+.|+
T Consensus 77 ~~~~~~-----~~~~k~~~~fg----s~g~~~~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~e~g~~i~~~lk 147 (152)
T d1e5da1 77 QYIKGL-----RPQNKIGGAFG----SFGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQLKTMAQTIARALK 147 (152)
T ss_dssp HHHHHT-----CCCSCEEEEEE----EESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcc-----CCCCCEEEEEE----eeCCCCccHHHHHHHHHHCCCEEecCcEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 988754 47899999999 477899999999999999999988764444322 2234457788888888777
Q ss_pred hhh
Q 005624 262 NLL 264 (687)
Q Consensus 262 ~~~ 264 (687)
+.+
T Consensus 148 ~k~ 150 (152)
T d1e5da1 148 AKL 150 (152)
T ss_dssp HHH
T ss_pred Hhh
Confidence 654
|
| >d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Clostridium beijerinckii [TaxId: 1520]
Probab=99.71 E-value=2.3e-17 Score=151.51 Aligned_cols=133 Identities=15% Similarity=0.169 Sum_probs=103.9
Q ss_pred EEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchH-HHHHHH
Q 005624 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNA-ARFYKW 185 (687)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna-~~F~~~ 185 (687)
|.|+|+|+||||+++|+.|++.+.+.+ ..+.+.++.+++. .++.+++.+||++||||+|.+|+++ ..|++.
T Consensus 1 i~IvY~S~tGnT~~vA~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~~~~i~g~pt~~~g~~p~~~~~~~~~~ 72 (138)
T d5nula_ 1 MKIVYWSGTGNTEKMAELIAKGIIESG--KDVNTINVSDVNI------DELLNEDILILGCSAMTDEVLEESEFEPFIEE 72 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTT--CCCEEEEGGGCCH------HHHTTCSEEEEEECCBTTTBCCTTTHHHHHHH
T ss_pred CEEEEECcChHHHHHHHHHHHHHHhcC--Ccceecccccccc------cccccCCeEEEEEeccCCCCCChHHHHHHHHH
Confidence 579999999999999999999999876 4578899988875 4578899999999999999998874 455554
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCC-CcHHhHHHHHHHH
Q 005624 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ-CIEDDFSAWRELV 256 (687)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~-~~e~~f~~W~~~l 256 (687)
+.. .++++++++||.... .||.+.+.++++|.++|++++.+....+... ...+...+|.++|
T Consensus 73 ~~~------~~~gk~~~~f~s~g~---~~~~~~~~~~~~l~~~G~~~v~~~~~~~~~p~e~~~~~~~~g~~l 135 (138)
T d5nula_ 73 IST------KISGKKVALFGSYGW---GDGKWMRDFEERMNGYGCVVVETPLIVQNEPDEAEQDCIEFGKKI 135 (138)
T ss_dssp HGG------GCTTCEEEEEEEESS---SCSHHHHHHHHHHHHTTCEECSCCEEEESSCGGGHHHHHHHHHHH
T ss_pred hCc------cCCCCcEEEEEEecC---CCCHHHHHHHHHHHHCCCEEecCcEEECCCCcHHHHHHHHHHHHH
Confidence 432 478999999985432 3578899999999999999998877665432 2234455665554
|
| >d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Phthalate dioxygenase reductase species: Pseudomonas cepacia, db01 [TaxId: 292]
Probab=99.70 E-value=5.7e-18 Score=151.61 Aligned_cols=109 Identities=17% Similarity=0.261 Sum_probs=81.0
Q ss_pred CcccCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEe
Q 005624 528 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 607 (687)
Q Consensus 528 ~F~lp~~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afS 607 (687)
+|.|+. ..+|+||||+|||||||+|++++..... ..+++|+||+|+++ |++|.+|++++.....+ ...+.
T Consensus 1 dF~l~~-~~~~~v~IagGtGiaP~~s~~~~l~~~~-----~~~~~l~~~~r~~~-~~~~~~~l~~~~~~~~~---~~~~~ 70 (120)
T d2piaa2 1 EFPLDK-RAKSFILVAGGIGITPMLSMARQLRAEG-----LRSFRLYYLTRDPE-GTAFFDELTSDEWRSDV---KIHHD 70 (120)
T ss_dssp CSCCCT-TCSEEEEEEEGGGHHHHHHHHHHHHHHC-----SSEEEEEEEESCGG-GCTTHHHHHSTTTTTTE---EEEEC
T ss_pred CCCCCC-CCCCEEEEEecccHHHHHHHHHHHHHhc-----CCCeEEEEeeCCHH-HhhhhHHHHHHhhCCCe---EEeee
Confidence 488885 5789999999999999999999986543 15799999999997 99999999998765433 33333
Q ss_pred cCCC-CccccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHH
Q 005624 608 REGP-TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLH 655 (687)
Q Consensus 608 r~~~-~k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~ 655 (687)
.... ...++... .....++..+|+||| ++|+++|++.+.
T Consensus 71 ~~~~~~~~~~~~~--------~~~~~~~~~~y~CGp-~~mi~~v~~~~~ 110 (120)
T d2piaa2 71 HGDPTKAFDFWSV--------FEKSKPAQHVYCCGP-QALMDTVRDMTG 110 (120)
T ss_dssp TTCTTSCCCHHHH--------HSSCCTTEEEEEESC-HHHHHHHHHHTT
T ss_pred cCCCcccccHHHH--------hccCCCcCEEEEeCC-HHHHHHHHHHHc
Confidence 3222 22222222 222346889999999 999999998664
|
| >d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Nitrate reductase species: Corn (Zea mays) [TaxId: 4577]
Probab=99.69 E-value=1.3e-17 Score=153.71 Aligned_cols=126 Identities=15% Similarity=0.218 Sum_probs=83.6
Q ss_pred CCcccCCC--CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCc-EEE
Q 005624 527 SNFKLPAD--AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS-QLI 603 (687)
Q Consensus 527 ~~F~lp~~--~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~-~l~ 603 (687)
|+|.++.. ..+++||||+|||||||+||+++.+.... ...++++|+||||+.+ +.+|.+++..+.+..... ..+
T Consensus 1 G~f~l~~~~~~~k~lv~IAgGtGIaP~~s~l~~~~~~~~--~~~~~v~l~~g~r~~~-~~~~~~~~~~~~~~~~~~~~~~ 77 (146)
T d2cnda2 1 GSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQP--EDHTEMHLVYANRTED-DILLRDELDRWAAEYPDRLKVW 77 (146)
T ss_dssp SCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTT--TCCCEEEEEEEESCGG-GCTTHHHHHHHHHHCTTTEEEE
T ss_pred CeEEeCCCCCCCCEEEEEeceEEHhHHHHHHHHHHHhCC--ccCceEEEEEeecccc-cchhHHHHhhHHHhCCCceeEE
Confidence 56777543 34789999999999999999999876432 2346899999999997 999999999998875543 333
Q ss_pred EEEecCCC-C--ccccchhhh-cchHHHHhcccCCcEEEEECCchhhHHH-HHHHHHH
Q 005624 604 VAFSREGP-T--KEYVQHKMM-EKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLHT 656 (687)
Q Consensus 604 ~afSr~~~-~--k~yVq~~l~-e~~~~v~~~i~~~~~iYvCG~a~~M~~~-V~~~L~~ 656 (687)
...++... . ..+...++. +..+.+.....++..+||||| ++|++. |++.|.+
T Consensus 78 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~vyiCGp-~~m~~~av~~~L~~ 134 (146)
T d2cnda2 78 YVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGP-PPMIQFAISPNLEK 134 (146)
T ss_dssp EEESCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEEEECC-HHHHHTTTHHHHHT
T ss_pred EeeccccCcccccccccCccchHHHHHhcccCCCCcEEEEECC-HHHHHHHHHHHHHH
Confidence 33333221 1 111122221 111222222245678999999 899885 6666654
|
| >d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: cytochrome b5 reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=3.1e-17 Score=152.40 Aligned_cols=116 Identities=19% Similarity=0.308 Sum_probs=85.8
Q ss_pred CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcC-CCcEEEEEEecCCCC
Q 005624 534 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQLIVAFSREGPT 612 (687)
Q Consensus 534 ~~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g-~~~~l~~afSr~~~~ 612 (687)
+..++|+|||+|||||||++++++.+.... ..++++|+||+|+.+ |++|++||++++++. ..++++.+.+++...
T Consensus 16 ~~~k~i~lIagGtGItP~~s~l~~~l~~~~---~~~~i~L~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~ 91 (147)
T d1umka2 16 RTVKSVGMIAGGTGITPMLQVIRAIMKDPD---DHTVCHLLFANQTEK-DILLRPELEELRNKHSARFKLWYTLDRAPEA 91 (147)
T ss_dssp EECSEEEEEEEGGGHHHHHHHHHHHHTCTT---CCCEEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEEEESSCCSS
T ss_pred ccCCeEEEEECCeecchHHHHHHHHHhcCC---CCceEEEEEEeCccc-cchhHHHHhhhhhhcCcceEEEEEecccccC
Confidence 345789999999999999999999865432 236799999999997 999999999998764 566788888876532
Q ss_pred ----ccccchhhhcchHHHHhcccCCcEEEEECCchhhHHH-HHHHHHHH
Q 005624 613 ----KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLHTI 657 (687)
Q Consensus 613 ----k~yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~-V~~~L~~i 657 (687)
++++++.+.++ .+.....+..+||||| ++|++. +++.|.++
T Consensus 92 ~~~~~g~~~~~~l~~---~~~~~~~~~~vyiCGP-~~m~~~~~~~~L~~~ 137 (147)
T d1umka2 92 WDYGQGFVNEEMIRD---HLPPPEEEPLVLMCGP-PPMIQYACLPNLDHV 137 (147)
T ss_dssp CSSEESSCCHHHHHH---HSCCGGGCCEEEEESC-HHHHHHTTHHHHHHH
T ss_pred cccceeehHHHHHHH---hcCCCcCCcEEEEeCC-HHHHHHHHHHHHHHc
Confidence 34554433221 1111245789999999 899875 66777655
|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Nitric oxide reductase C-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Probab=99.67 E-value=1e-16 Score=149.03 Aligned_cols=143 Identities=14% Similarity=0.043 Sum_probs=112.8
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
+.+++|+|+|+||||+++|+.|++.+.+.+ ..++++++.+.+.++ ....+.+++++||++||| .|.+|+.++.|+
T Consensus 2 k~K~lIvY~S~~GnT~~vA~~Ia~~l~~~g--~~v~~~~~~~~~~~~--~~~~~~~~d~ii~Gspt~-~g~~~~~~~~~l 76 (149)
T d1ycga1 2 KAKAVIAYDTMWLSTEKMAHALMDGLVAGG--CEVKLFKLSVSDRND--VIKEILDARAVLVGSPTI-NNDILPVVSPLL 76 (149)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEEGGGSCHHH--HHHHHHHCSEEEEECCCB-TTBCCGGGHHHH
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHHhcC--CeeEEEEccccchHH--HhhhhhhCCeEEEEeecc-cCCCCHHHHHHH
Confidence 578999999999999999999999999875 567888998877543 334567899999999999 789999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccccCCCCcH---HhHHHHHHHHHHHH
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIE---DDFSAWRELVWPEL 260 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~gD~~~~~e---~~f~~W~~~l~~~L 260 (687)
+.+... .++++.+++|| +|.+++.+.+.+.+.|+.+|++.+.+.+..-.....+ +...+|.++|...|
T Consensus 77 ~~l~~~-----~~~~k~~~~fg----s~g~~g~a~~~l~~~l~~~g~~~v~~~~~~~~~~P~~~dl~~~~e~g~~ia~kl 147 (149)
T d1ycga1 77 DDLVGL-----RPKNKVGLAFG----AYGWGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRKIAARI 147 (149)
T ss_dssp HHHHHH-----CCSSCEEEEEE----EESSSCCHHHHHHHHHHHTTCEESCSSCCEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcc-----ccCCCEEEEEe----cccCCchhHHHHHHHHHHCCCEEeccceEEEcccCCHHHHHHHHHHHHHHHHHh
Confidence 998764 47899999999 5677788999999999999999887643221111122 34556766665544
|
| >d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Azotobacter vinelandii [TaxId: 354]
Probab=99.63 E-value=1.9e-16 Score=148.14 Aligned_cols=122 Identities=19% Similarity=0.305 Sum_probs=85.4
Q ss_pred CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCC--------cEEEEEE
Q 005624 535 AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL--------SQLIVAF 606 (687)
Q Consensus 535 ~~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~--------~~l~~af 606 (687)
|.+++||||+|||||||+||++++...+.. ++++++||+|+.+ |.+|.+|+..+...... +++....
T Consensus 6 p~~~lvlIagGtGIaP~~sil~~~~~~~~~----~~~~l~~g~r~~~-~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~ 80 (158)
T d1a8pa2 6 PGKHLYMLSTGTGLAPFMSLIQDPEVYERF----EKVVLIHGVRQVN-ELAYQQFITEHLPQSEYFGEAVKEKLIYYPTV 80 (158)
T ss_dssp CCSEEEEEEEGGGGHHHHHHTTCHHHHHHC----SEEEEEEEESSGG-GCTTHHHHHTTGGGCTTTHHHHHHHEEEEEEE
T ss_pred CCCCEEEEEchhhHHHHHHHHHHHHHhCCC----CceeeeeccccHH-HHhhHHHHHHHHhhhhhhhhccccceEEEEec
Confidence 357899999999999999999998776543 6899999999997 99999999887765431 2345555
Q ss_pred ecCCC-Cccccchhhhcch--HHH-Hhcc-cCCcEEEEECCchhhHHHHHHHHHHHHHHhC
Q 005624 607 SREGP-TKEYVQHKMMEKS--SDI-WNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQG 662 (687)
Q Consensus 607 Sr~~~-~k~yVq~~l~e~~--~~v-~~~i-~~~~~iYvCG~a~~M~~~V~~~L~~i~~~~~ 662 (687)
++... ..+...+...... +.+ ...+ ..+.+|||||| ++|+++|.++|.+...+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yiCGp-~~m~~~v~~~L~~~G~~~~ 140 (158)
T d1a8pa2 81 TRESFHNQGRLTDLMRSGKLFEDIGLPPINPQDDRAMICGS-PSMLDESCEVLDGFGLKIS 140 (158)
T ss_dssp SSSCCSSBSCHHHHHHSSHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHTTCCBC
T ss_pred ccccccccccccchhccchhhhhhhccccCcccceEEEECC-HHHHHHHHHHHHHcCCCcc
Confidence 65433 2222222211110 111 1112 46789999999 9999999999998765443
|
| >d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.54 E-value=9.1e-15 Score=133.63 Aligned_cols=119 Identities=18% Similarity=0.294 Sum_probs=96.8
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCC
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (687)
.|+.++|+.++|+.+++|+..++...++||+|++.+ .+.|+||++|+|+++|..+
T Consensus 13 ~y~p~~P~~a~V~~~~~lt~~~~~~~t~~i~~~~~~-~~~y~pGQ~v~v~~p~~~~------------------------ 67 (136)
T d1fnda1 13 KFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEG-EIPYREGQSVGVIPDGEDK------------------------ 67 (136)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTT-CCCCCTTCEEEEECSSBCT------------------------
T ss_pred eecCCCCeEEEEEeEEEccCCCCCceEEEEecccCC-CCcccCCCEEEEECCCccc------------------------
Confidence 477889999999999999988889999999999954 7999999999999875310
Q ss_pred CCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccc
Q 005624 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYS 468 (687)
Q Consensus 389 ~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YS 468 (687)
+ ..++.+|.||
T Consensus 68 ~---------------------------------------------------------------------~~~~~~R~YS 78 (136)
T d1fnda1 68 N---------------------------------------------------------------------GKPHKLRLYS 78 (136)
T ss_dssp T---------------------------------------------------------------------SSBCCCEEEE
T ss_pred c---------------------------------------------------------------------cccceeEEee
Confidence 0 0234579999
Q ss_pred cCCCCCCC---CCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeC
Q 005624 469 ISSSPRVA---PSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 527 (687)
Q Consensus 469 IsSsp~~~---~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~ 527 (687)
|||+|... +..++++|+.+.+.+..++.+.|+||+||+++.+|++ +.|..+.|
T Consensus 79 IaSsP~~~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~dLk~GD~------V~v~GP~G 134 (136)
T d1fnda1 79 IASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAE------VKLTGPVG 134 (136)
T ss_dssp CCSCTTCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTCE------EEEEEEEC
T ss_pred cccCCcCCCCCCcEEEEEEEEeecccCCCcCCCceEehhhccCCCcCE------EEEeCCCC
Confidence 99999753 3679999988888888888899999999999888763 55555544
|
| >d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Probab=99.52 E-value=2.5e-14 Score=130.45 Aligned_cols=124 Identities=22% Similarity=0.333 Sum_probs=99.7
Q ss_pred cccCCCCeeEEEeeeecccCCCCCCceEEEEEeecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCCceEEEeeCCC
Q 005624 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (687)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (687)
.|+.++|+.|+|+.+++|+.+++...++||+|++.+..+.|+|||+++|+|+|...
T Consensus 6 ~~~~~~P~~a~V~~~~~lt~~~~~~~v~~i~~~~~~~~~~y~pGQ~v~v~~p~~~~------------------------ 61 (133)
T d2bmwa1 6 LYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDK------------------------ 61 (133)
T ss_dssp SBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBCT------------------------
T ss_pred ccCCCCCeEEEEEEEEEccCCCCCceEEEEEEccCCccCCccCCCEEEEEeccccc------------------------
Confidence 36778999999999999999888999999999999889999999999999987420
Q ss_pred CCCcCCCCCCCCCCCcCcHHHHHHHhhhhcCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChHHHHHHHcCCCcccccc
Q 005624 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYS 468 (687)
Q Consensus 389 ~~~~l~~~~~~~~~pp~tl~~~l~~y~Dl~~~p~k~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~~~p~l~pR~YS 468 (687)
++ ....+|.||
T Consensus 62 ~~---------------------------------------------------------------------~~~~~R~YS 72 (133)
T d2bmwa1 62 NG---------------------------------------------------------------------KPEKLRLYS 72 (133)
T ss_dssp TS---------------------------------------------------------------------CBCCCEEEE
T ss_pred cc---------------------------------------------------------------------cccceeeee
Confidence 00 123479999
Q ss_pred cCCCCCCCC---CeEEEEEEEEEe-eCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCccc
Q 005624 469 ISSSPRVAP---SRIHVTCALVYE-KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKL 531 (687)
Q Consensus 469 IsSsp~~~~---~~i~itv~~v~~-~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~l 531 (687)
|||+|...+ ..++++|+.+.. ....+..+.|+||+||+++++|+ .+.|..+.|+|.|
T Consensus 73 ias~p~~~~~~~~~~~~~Vk~~~~~~~~~~~~~~G~~S~yL~~lk~GD------~v~v~GP~G~~fL 133 (133)
T d2bmwa1 73 IASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGS------EVKITGPVGKEML 133 (133)
T ss_dssp BCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTC------EEEEEEEECSSSC
T ss_pred ecCCCcCCCCCccEEEEEEEeccccccccCCCCCcEehhhHhhCCCCC------EEEEeCCccceeC
Confidence 999997533 468888876643 33456778999999999998877 4678888888865
|
| >d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Dihydroorotate dehydrogenase B, PyrK subunit domain: Dihydroorotate dehydrogenase B, PyrK subunit species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.40 E-value=1.3e-13 Score=129.43 Aligned_cols=102 Identities=25% Similarity=0.334 Sum_probs=74.8
Q ss_pred CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeccCCcccccHHHHHHHHHcCCCcEEEEEEecCC-CCcc
Q 005624 536 KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG-PTKE 614 (687)
Q Consensus 536 ~~PiImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~LffG~R~~~~D~ly~del~~~~~~g~~~~l~~afSr~~-~~k~ 614 (687)
..++||||+|||||||++++++..+.+ .+++|+||+|+++ |.+|.+||+++... .+++...... ..++
T Consensus 8 ~~kvllIAgG~GitPl~sm~~~l~~~~------~~v~l~~g~r~~~-~~~~~~el~~~~~~----~~~~~~~~~~~~~~g 76 (160)
T d1ep3b2 8 TDKILIIGGGIGVPPLYELAKQLEKTG------CQMTILLGFASEN-VKILENEFSNLKNV----TLKIATDDGSYGTKG 76 (160)
T ss_dssp TSEEEEEEEGGGSHHHHHHHHHHHHHT------CEEEEEEEESSGG-GCCCHHHHHTSTTE----EEEEEETTCSSSEES
T ss_pred CCEEEEEEeeeeHHHHHHHHHHHHhcc------CceEEEEecCCHH-HHHHHHHHHHhhCC----CccccccCccccccc
Confidence 456999999999999999999865433 5799999999997 99999999887532 3343333221 2345
Q ss_pred ccchhhhcchHHHHhcccCCcEEEEECCchhhHHHHHHHHHH
Q 005624 615 YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 656 (687)
Q Consensus 615 yVq~~l~e~~~~v~~~i~~~~~iYvCG~a~~M~~~V~~~L~~ 656 (687)
++.+.+.+ .......+|+||| .+|+++|.+.+.+
T Consensus 77 ~v~~~~~~-------~~~~~~~vy~CGP-~~m~~~v~~~~~~ 110 (160)
T d1ep3b2 77 HVGMLMNE-------IDFEVDALYTCGA-PAMLKAVAKKYDQ 110 (160)
T ss_dssp CHHHHHHH-------CCSCCSEEEEESC-HHHHHHHHHHTTT
T ss_pred cHHHHHHh-------hccccceeeeecc-chHHHHHHHHHHh
Confidence 66554332 2245789999999 8999998876653
|
| >d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: WrbA-like domain: Flavodoxin FldA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.32 E-value=3.9e-12 Score=122.05 Aligned_cols=120 Identities=16% Similarity=0.080 Sum_probs=98.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcchhHHHhccCCCeEEEEeeCCCCCCCCchHHHHH
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~ 183 (687)
|++|+|+|.|.||||+++|+.|++.+.+.. +..+++.++++..+ +++..++.+||++||| .|.++..++.|+
T Consensus 1 M~kilivy~S~~G~T~~~A~~ia~g~~~~~-g~~v~~~~~~~~~~------~dl~~~d~iiiGsPty-~g~~~~~~~~fl 72 (184)
T d2arka1 1 MGKVLVIYDTRTGNTKKMAELVAEGARSLE-GTEVRLKHVDEATK------EDVLWADGLAVGSPTN-MGLVSWKMKRFF 72 (184)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTST-TEEEEEEETTTCCH------HHHHHCSEEEEEEECB-TTBCCHHHHHHH
T ss_pred CCeEEEEEECCCcHHHHHHHHHHHhhhhcc-CceEEEeecccccc------cchhhCcEEEEecCcc-ccccCHHHHHHH
Confidence 678999999999999999999999997632 36678889988775 3577899999999999 999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
+.+.... ...++|+.+++||.+.....-...+...+.+.|..+|..-+
T Consensus 73 d~~~~~~--~~~l~gK~~a~f~s~g~~~gG~e~al~~~~~~l~~~G~~vv 120 (184)
T d2arka1 73 DDVLGDL--WGEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFLVF 120 (184)
T ss_dssp HHTGGGT--TTSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHH--HHHhCCeEEEEEEccCCCCccHHHHHHHhhhHhhhCCCEEe
Confidence 9986432 12589999999998655553344467889999999998855
|
| >d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: WrbA-like domain: Trp repressor binding protein WrbA species: Deinococcus radiodurans [TaxId: 1299]
Probab=98.92 E-value=2.3e-09 Score=103.55 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=81.7
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcc-------------------hhHHHhccCCCeEE
Q 005624 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE-------------------DEYEEKLKKENIVF 164 (687)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~-------------------~~~~~~l~~~~~vi 164 (687)
.++|+|+|+|+||||+.+|+.+++.+++.| +.++++++.++.... ....+++.+++.+|
T Consensus 2 ~mkilivy~S~~GnT~~la~~ia~g~~~~G--~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~~aD~ii 79 (201)
T d1ydga_ 2 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAG--AEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIV 79 (201)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEE
T ss_pred CcEEEEEEeCCCcHHHHHHHHHHHHHHhcC--CEEEEEEccccCccchhhhhhHhhcCCCcccCchhhhhhhHhhCCEeE
Confidence 379999999999999999999999999876 567888887653211 11235688899999
Q ss_pred EEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCch
Q 005624 165 FFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY 211 (687)
Q Consensus 165 ~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y 211 (687)
|++||| .|.++..++.|++++.... ....|.++..++|+.+-...
T Consensus 80 ~gsPvy-~~~~s~~~k~flDr~~~~~-~~~~l~gK~~~~~~s~g~~~ 124 (201)
T d1ydga_ 80 FSSPTR-FGGATSQMRAFIDTLGGLW-SSGKLANKTFSAMTSAQNVN 124 (201)
T ss_dssp EEEEEE-TTEECHHHHHHHHTTHHHH-HTTTTTTCEEEEEEEESSTT
T ss_pred Eeccee-eeeccchhHHHHHHhhhHH-hccccCCceeeeeeccccCC
Confidence 999999 8999999999999764321 12358999999998764443
|
| >d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: WrbA-like domain: Trp repressor binding protein WrbA species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.78 E-value=9.5e-09 Score=98.36 Aligned_cols=125 Identities=14% Similarity=-0.012 Sum_probs=91.1
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc-------------chhHHHhccCCCeEEEEeeCCC
Q 005624 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADE-------------EDEYEEKLKKENIVFFFLATYG 171 (687)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-------------~~~~~~~l~~~~~vi~~~sTyG 171 (687)
.||+|+|+|++|||+.+|+.+++.+++.+ +.++++++.++... .....+++.+++.+||++|||
T Consensus 2 ~Kvliiy~S~~GnT~~la~~i~~g~~~~g--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~ii~gsP~y- 78 (196)
T d2a5la1 2 PYILVLYYSRHGATAEMARQIARGVEQGG--FEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTR- 78 (196)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECB-
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHhhcC--CEEEEEeccccchHHHHhccccccccccccchhhhhhcCEEEEecchh-
Confidence 48999999999999999999999999875 56778888654211 111245788999999999999
Q ss_pred CCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 172 DGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 172 ~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
.|.+|..++.|++.+..... ...+.++..+.+..+-........+...+...+...|...+
T Consensus 79 ~~~~~~~~k~flDr~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v 139 (196)
T d2a5la1 79 FGNMASPLKYFLDGTSSLWL-TGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVL 139 (196)
T ss_dssp TTBCCHHHHHHHHTCHHHHH-HTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEEC
T ss_pred hccccHHHHHHHHHhhhHhh-cCCccCceeEEeecccccCCchHHHHHHHHHHHhhhceeee
Confidence 89999999999997653211 12356676666766655555555556666777777665543
|
| >d1nni1_ c.23.5.4 (1:) Azobenzene reductase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: NADPH-dependent FMN reductase domain: Azobenzene reductase species: Bacillus subtilis [TaxId: 1423]
Probab=98.16 E-value=7.1e-06 Score=76.21 Aligned_cols=145 Identities=9% Similarity=0.158 Sum_probs=97.0
Q ss_pred ceEEEEEec--CcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc----c---------hhHHHhccCCCeEEEEeeC
Q 005624 105 QKVTIFFGT--QTGTAEGFAKALADEARARYDKAIFKVVDIDDYADE----E---------DEYEEKLKKENIVFFFLAT 169 (687)
Q Consensus 105 ~~v~I~YgS--qtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~----~---------~~~~~~l~~~~~vi~~~sT 169 (687)
|||++++|| ..|+|+.+++.+.+.+. ++++|+.+++.. + .++.+.+...|.+||++|+
T Consensus 1 MKIl~I~GS~r~~s~t~~l~~~~~~~~~-------~~~idl~~~~lp~~~~~~~~~~~~~~~~l~~~i~~aD~vIi~sP~ 73 (171)
T d1nni1_ 1 MNMLVINGTPRKHGRTRIAASYIAALYH-------TDLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPE 73 (171)
T ss_dssp CCEEEEECCCCTTCHHHHHHHHHHHHHT-------CEEEETTTSCCCCCCCCHHHHTSHHHHHHHHHHHHCSEEEEEEEC
T ss_pred CEEEEEECCCCCcChHHHHHHHHHhhCC-------ceEEEcccCCCCCccccccccccHHHHHHHHHhhccCceEEechH
Confidence 579999999 78999999999887663 366777665421 0 1123557888999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc---ccc--c-cCCC
Q 005624 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP---VGL--G-DDDQ 243 (687)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l~~---~g~--g-D~~~ 243 (687)
| .|.+|...+.|++|+... .+.++.+++++.+-.....+ .+...+...|..+|+.-+.. .+. . .++.
T Consensus 74 Y-~~~~~~~lKn~iD~~~~~-----~~~~K~~~~~~~s~g~~gg~-~~~~~l~~~l~~l~~~v~~~~~~~~~~~~~~~~~ 146 (171)
T d1nni1_ 74 Y-HSGMSGALKNALDFLSSE-----QFKYKPVALLAVAGGGKGGI-NALNNMRTVMRGVYANVIPKQLVLDPVHIDVENA 146 (171)
T ss_dssp B-TTBCCHHHHHHHHHCCHH-----HHTTCEEEEEEECCSTTTTH-HHHHHHHHHHHHTTCEECSCCEEECGGGEEGGGT
T ss_pred H-hcccchhHhHHHHHhccc-----ccCCCeEEEEEEeeCccchH-HHHHHHHHHHHHCCCEEECCeEEeccceeccCCC
Confidence 9 999999999999999643 48899999987633222111 23455667788889874321 111 1 1122
Q ss_pred CcHHhHHHHHHHHHHHHHhh
Q 005624 244 CIEDDFSAWRELVWPELDNL 263 (687)
Q Consensus 244 ~~e~~f~~W~~~l~~~L~~~ 263 (687)
...+++.+..+.+...|.+.
T Consensus 147 ~~~e~~~~~l~~~~~~l~~~ 166 (171)
T d1nni1_ 147 TVAENIKESIKELVEELSMF 166 (171)
T ss_dssp EECHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 34455666666666655543
|
| >d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: NADPH-dependent FMN reductase domain: Hypothetical protein Ylr011wp species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.14 E-value=7.8e-06 Score=77.16 Aligned_cols=119 Identities=15% Similarity=0.142 Sum_probs=90.7
Q ss_pred ceEEEEEecC--cchHHHHHHHHHHHHHhhc----CCCeeEEecCCCCCCc-----------------------chhHHH
Q 005624 105 QKVTIFFGTQ--TGTAEGFAKALADEARARY----DKAIFKVVDIDDYADE-----------------------EDEYEE 155 (687)
Q Consensus 105 ~~v~I~YgSq--tGtae~~A~~la~~l~~~~----~~~~v~v~dl~~~~~~-----------------------~~~~~~ 155 (687)
|||+|++||. .|++..+|+.+.+.+++.. .+..++++|+.+++.. -..+.+
T Consensus 1 MKIlvI~GS~R~~s~~~~la~~~~~~l~~~~~~~~~g~~v~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T d1t0ia_ 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR 80 (185)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH
T ss_pred CEEEEEeCCCCCCChHHHHHHHHHHHHHHhhhhcCCCcEEEEEeccccCccccchhhhccccccccccccCCHHHHHHHH
Confidence 6899999995 6899999999999998642 2356788887654320 011234
Q ss_pred hccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 156 KLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 156 ~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
.+...|.+||++|.| +|.+|.-.+.|++|+.. .+.++++++++.|.+.= -.+...+...|..+|+..+
T Consensus 81 ~i~~AD~iIi~tP~Y-~~~~~~~lK~~iD~~~~------~~~gKpv~ivs~g~~gg---~~a~~~L~~~l~~~g~~vv 148 (185)
T d1t0ia_ 81 IVNALDIIVFVTPQY-NWGYPAALKNAIDRLYH------EWHGKPALVVSYGGHGG---SKCNDQLQEVLHGLKMNVI 148 (185)
T ss_dssp HHHTCSEEEEEEECB-TTBCCHHHHHHHHTCST------TTTTCEEEEEEEETTTT---HHHHHHHHHHHHHTTCEEE
T ss_pred HHHhCCCeEEEEeee-cCCCcHHHHHHHHHhhH------HHCCCEEEEEEEcCcch---HHHHHHHHHHHHHCCCEEc
Confidence 578889999999999 89999999999999853 48899999998775431 1244568888888998855
|
| >d1sqsa_ c.23.5.5 (A:) Hypothetical protein SP1951 {(Streptococcus pneumoniae) [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Hypothetical protein SP1951 domain: Hypothetical protein SP1951 species: (Streptococcus pneumoniae) [TaxId: 1313]
Probab=98.10 E-value=1e-05 Score=79.08 Aligned_cols=129 Identities=12% Similarity=0.135 Sum_probs=96.6
Q ss_pred CceEEEEEecCc--chHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc----------------------chhHHHhccC
Q 005624 104 KQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYADE----------------------EDEYEEKLKK 159 (687)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~----------------------~~~~~~~l~~ 159 (687)
|++|+|+.||.. |+|..+|+.+.+.+.+.+ .+.++++|+.+++.. -..+.+.+.+
T Consensus 1 MkkI~ii~gS~r~~s~t~~l~~~~~~~l~~~~-~~e~~~~~l~~~~i~~~~~~~~~c~~~~~~~~~~~d~~~~i~~~i~~ 79 (232)
T d1sqsa_ 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRN-NVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLE 79 (232)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHS-CCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHhcC-CeEEEEEeccccccchhhhHHHHhhhcccccccchHHHHHHHHHHHh
Confidence 689999999975 999999999999998775 345677777654421 1123445778
Q ss_pred CCeEEEEeeCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEecc-CCchHHHHHHHHHHHHHHHHcCCcccccccc
Q 005624 160 ENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLG-NRQYEHFNKIAKVVDEILANQGAKRLVPVGL 238 (687)
Q Consensus 160 ~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlG-ds~Y~~f~~~ak~ld~~L~~lGa~~l~~~g~ 238 (687)
.+.+||++|+| .|..|..++.|++++.... ....|.|++.+++..+ ...-. .+...+...|..+|++.+...+.
T Consensus 80 AD~iI~~sP~y-~~~~s~~lK~~iDr~~~~~-~~~~l~gK~~~~i~t~g~~g~~---~~~~~l~~~l~~~G~~~v~~~~~ 154 (232)
T d1sqsa_ 80 SDIIIISSPVY-LQNVSVDTKNFIERIGGWS-HLFRLAGKFVVTLDVAESNGSD---NVSEYLRDIFSYMGGQILHQVSI 154 (232)
T ss_dssp CSEEEEEEEEC-SSSCCHHHHHHHHHTGGGT-TTTTTTTCEEEEEEEESSCCSC---CHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCEEEEEeccc-cCcchHHHHHHHHHhHhhh-ccccccCCeEEEEEEccCCcHH---HHHHHHHHHHHHCCCEEeceeEE
Confidence 89999999999 8999999999999987532 2345899999988653 22211 24567888899999998866554
|
| >d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: NADPH-dependent FMN reductase domain: Putative arsenical resistance protein species: Shigella flexneri [TaxId: 623]
Probab=98.08 E-value=1.3e-05 Score=78.48 Aligned_cols=128 Identities=11% Similarity=0.035 Sum_probs=95.3
Q ss_pred ccCCceEEEEEec--CcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcc----------hhHHHhccCCCeEEEEee
Q 005624 101 DDGKQKVTIFFGT--QTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE----------DEYEEKLKKENIVFFFLA 168 (687)
Q Consensus 101 ~~~~~~v~I~YgS--qtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~----------~~~~~~l~~~~~vi~~~s 168 (687)
++...+|+|++|| ..++++.+|+.+++.+++.| ..++++|+.++...+ .++.+.+...+.+||++|
T Consensus 31 ~~~~~KIl~I~GS~R~~s~s~~la~~~~~~l~~~G--~ev~~idL~dlpl~~~~~~~~~~~v~~l~~~l~~AD~vIi~tP 108 (233)
T d2fzva1 31 DAPPVRILLLYGSLRARSFSRLAVEEAARLLQFFG--AETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSP 108 (233)
T ss_dssp CCSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTT--CEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--eEEEEEccCCCCCCCcccccCCHHHHHHHHHHhhcCeeEEEcc
Confidence 4567899999999 56789999999999998765 678899998876421 123445777899999999
Q ss_pred CCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
+| +|.+|.-.+.|++|+.........+.++.+++++.+... ..+. +...+...|..+|+.-+
T Consensus 109 ~Y-~~~~~~~lKn~iD~~~~~~~~~~~~~gK~~~ii~~sgg~-gg~~-a~~~Lr~~l~~lg~~vv 170 (233)
T d2fzva1 109 ER-HGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGS-QSFN-AVNTLRLLGRWMRMFTI 170 (233)
T ss_dssp EE-TTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSS-CCCH-HHHHHHHHHHHTTCEEC
T ss_pred cc-ccCcHHHHHhhHHhcccccccchhccCceeEeeeeccCc-chHH-HHHHHHHHHhhCCCEEE
Confidence 99 999999999999999643222335788999988776443 2222 23456677788888644
|
| >d1rlia_ c.23.5.6 (A:) Hypothetical protein YwqN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Hypothetical protein YwqN domain: Hypothetical protein YwqN species: Bacillus subtilis [TaxId: 1423]
Probab=97.85 E-value=3.6e-05 Score=71.29 Aligned_cols=120 Identities=13% Similarity=0.121 Sum_probs=83.3
Q ss_pred eEEEEEec--CcchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc------------------chhHHHhccCCCeEEE
Q 005624 106 KVTIFFGT--QTGTAEGFAKALADEARARYDKAIFKVVDIDDYADE------------------EDEYEEKLKKENIVFF 165 (687)
Q Consensus 106 ~v~I~YgS--qtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~------------------~~~~~~~l~~~~~vi~ 165 (687)
||+|++|| ..|||+.+|+.+.+.+ .++.+++.+++.. ..++.+++...|.+||
T Consensus 1 KIlii~gSpr~~gnt~~l~~~~~~g~-------e~e~i~l~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~l~~AD~ii~ 73 (179)
T d1rlia_ 1 KIAVINGGTRSGGNTDVLAEKAVQGF-------DAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIF 73 (179)
T ss_dssp CEEEEESSCSSCCHHHHHHHHHHTTT-------CCEEEEC-----------------------CHHHHHHHHHTCSEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHcCC-------CeeEEEhhhhccCCccchhhhhcCCCCccHHHHHHHHHHHhCCeEEE
Confidence 68999999 5899999999887643 2345555544321 2334567889999999
Q ss_pred EeeCCCCCCCCchHHHHHHHHHhhcCC------CCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCccc
Q 005624 166 FLATYGDGEPTDNAARFYKWFTEQKEG------GEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 166 ~~sTyG~G~~pdna~~F~~~L~~~~~~------~~~l~~~~~aVFGlGds~Y-~~f~~~ak~ld~~L~~lGa~~l 233 (687)
++|+| .|.+|...+.|++++...... +..+++++++++..|-..+ ..+-.+...+...|.-+|.+.+
T Consensus 74 ~sP~y-~~~~~a~lK~~iDr~~~~~~~~~~~~~~~~~~~K~~~~i~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~ 147 (179)
T d1rlia_ 74 ATPIY-WFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFK 147 (179)
T ss_dssp EEECB-TTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCEEE
T ss_pred eeccc-CCCccHHHHHHHHHHHHhccccccCCcccccCCCEEEEEEecCCCCcchHHHHHHHHHHHHhhcCCEEc
Confidence 99999 999999999999987542110 1246788888887776554 3344455677778877888744
|
| >d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: NADPH-dependent FMN reductase domain: Hypothetical protein PA1204 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.67 E-value=0.00016 Score=67.14 Aligned_cols=122 Identities=10% Similarity=0.118 Sum_probs=88.6
Q ss_pred ceEEEEEecC--cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcc------------hhHHHhccCCCeEEEEeeCC
Q 005624 105 QKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE------------DEYEEKLKKENIVFFFLATY 170 (687)
Q Consensus 105 ~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~------------~~~~~~l~~~~~vi~~~sTy 170 (687)
|||+++.||. .++++.+|+.+.+.+.+ +..++++|+.+...-+ .++.+.+...|.+||++|.|
T Consensus 1 MKIl~i~GS~r~~s~s~~l~~~~~~~~~~---~~ev~~idl~dlP~~~~d~~~~~~~~~~~~~~~~i~~aD~iii~sP~y 77 (174)
T d1rtta_ 1 IKVLGISGSLRSGSYNSAALQEAIGLVPP---GMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEY 77 (174)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCT---TCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEE
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHhcCC---CCEEEEEecccCCCccccccccCCCHHHHHHHHHhhcCCeEEEEccch
Confidence 6899999994 56688888877765542 3567889988753211 12234567789999999999
Q ss_pred CCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005624 171 GDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (687)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~ak~ld~~L~~lGa~~l 233 (687)
.|..|.-.+.|++|+... ....+.|+.+++++.+-..+.... +...+...|..+|+..+
T Consensus 78 -~~s~~~~lKn~iD~l~~~--~~~~~~gK~~~~i~~sgG~~~~~~-~~~~l~~~l~~~g~~~i 136 (174)
T d1rtta_ 78 -NYSMAGVLKNAIDWASRP--PEQPFSGKPAAILGASAGRFGTAR-AQYHLRQTLVFLDVHPL 136 (174)
T ss_dssp -TTEECHHHHHHHHHHTCS--SSCTTTTCEEEEEEECSSTTTTHH-HHHHHHHHHHHHTCEEC
T ss_pred -hccccHHHHHHHHHHhcc--cccccCCCEEEEEEECCCccchHH-HHHHHHHHHHHCCCEEc
Confidence 999999999999999642 234699999999977543332222 45567777888898765
|
| >d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Quinone reductase domain: Quinone reductase type 2 (menadione reductase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.00023 Score=68.74 Aligned_cols=158 Identities=16% Similarity=0.086 Sum_probs=102.4
Q ss_pred CceEEEEEecC--cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCcc-------------------------------
Q 005624 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE------------------------------- 150 (687)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~------------------------------- 150 (687)
.|+|+|+|||- .+.|..+++.+.+.+++.+ ..++++||.+...+.
T Consensus 2 ~mKiLiI~ghp~~~S~t~~l~~~~~~~~~~~g--~ev~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (230)
T d2qwxa1 2 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQG--CTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRS 79 (230)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTT--CEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTC
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCC--CEEEEEEccccCCcccchHHHhhhccCchhhhcchhhhhhhhhccc
Confidence 58999999984 4678999999999999886 468899985543210
Q ss_pred -----hhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhc--------CCCCCcCCceEEEE-eccCCc--hH--
Q 005624 151 -----DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK--------EGGEWLQKLKYGVF-GLGNRQ--YE-- 212 (687)
Q Consensus 151 -----~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~--------~~~~~l~~~~~aVF-GlGds~--Y~-- 212 (687)
..+.+.+...+.+||++|.| .+.+|.-.+.|++++.... .....++++++.+. ..|... |.
T Consensus 80 ~~~di~~~~~~l~~AD~iv~~~P~y-~~~~pa~lK~~iDrV~~~g~af~~~~~~~~g~l~~kk~~~i~t~g~~~~~~~~~ 158 (230)
T d2qwxa1 80 LASDITDEQKKVREADLVIFQFPLY-WFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKT 158 (230)
T ss_dssp BCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTGGGSTT
T ss_pred ccHHHHHHHHHHHhCCEEEEEeCcc-cccCCHHHHHHHHHhcccCcccccCCCCCcccccCCeEEEEeccCCchhhcccc
Confidence 12234577889999999999 9999999999999864210 11234667765554 444322 21
Q ss_pred HHHHHHHHHHH-----HHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhhh
Q 005624 213 HFNKIAKVVDE-----ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 213 ~f~~~ak~ld~-----~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (687)
.++.....+.. .+.-+|.+.+-+......+...++++..|.+++-+.|..+.
T Consensus 159 g~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 215 (230)
T d2qwxa1 159 GVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIW 215 (230)
T ss_dssp STTCCHHHHHHHHHCCCCCTTTCEECCCEEECCTTTSCHHHHHHHHHHHHHHHHTGG
T ss_pred cccccHHHHHHHHHHHHHHhCCCeEcceEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12222222222 22224666554444444444567788899888888787765
|
| >d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=1.8e-05 Score=66.85 Aligned_cols=66 Identities=18% Similarity=0.145 Sum_probs=45.4
Q ss_pred CCChHHHHHHHcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEE
Q 005624 448 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 524 (687)
Q Consensus 448 ~~p~~~~l~~~~p~---l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v 524 (687)
...+|||+.+.+|. ...|+|||+|+|.. +.++++|+. ...|.+|+||+++.+|+. +.|..
T Consensus 29 ~f~pGQ~v~l~~~~~g~~~~R~YSi~s~p~~--~~~~~~vk~---------~~~G~~S~~l~~lk~GD~------v~v~g 91 (99)
T d1fdra1 29 PFTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVT---------VPDGKLSPRLAALKPGDE------VQVVS 91 (99)
T ss_dssp CCCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEEC---------CTTCSSHHHHHTCCTTCE------EEEES
T ss_pred CCCCCcEEEeccCCCCCcEEEEEccCCCCCC--ceeEEEEEE---------ecCcHHHHHHhhCCCCCE------EEECc
Confidence 45679998654453 24699999999863 568877752 346999999999887763 45554
Q ss_pred ee-CCcc
Q 005624 525 RQ-SNFK 530 (687)
Q Consensus 525 ~~-~~F~ 530 (687)
+. |.|.
T Consensus 92 P~~g~F~ 98 (99)
T d1fdra1 92 EAAGFFV 98 (99)
T ss_dssp SCBCCCS
T ss_pred CCCCEEE
Confidence 44 4454
|
| >d2z98a1 c.23.5.3 (A:1-200) ACP phosphodiesterase AcpD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Quinone reductase domain: ACP phosphodiesterase AcpD species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=0.00061 Score=64.29 Aligned_cols=157 Identities=10% Similarity=0.069 Sum_probs=106.9
Q ss_pred eEEEEEecCcc---hHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc---------------------------chhHHH
Q 005624 106 KVTIFFGTQTG---TAEGFAKALADEARARYDKAIFKVVDIDDYADE---------------------------EDEYEE 155 (687)
Q Consensus 106 ~v~I~YgSqtG---tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------------------------~~~~~~ 155 (687)
||+|+=||--| +|..+++.+.+.++++++...+.++|+.+.... ..++.+
T Consensus 2 KiLvi~~Spr~~~S~S~~L~~~f~e~~~~~~~~~eV~~~DL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (200)
T d2z98a1 2 KVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIA 81 (200)
T ss_dssp EEEEEECCSSGGGCHHHHHHHHHHHHHHHHSTTSEEEEEETTTTTCCCCCHHHHHHC------CCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcCCHHHHhhhcCCccccCHHHHHHHHHHHHHHH
Confidence 68999999864 789999999999999887777888888664420 012234
Q ss_pred hccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhcC--------CCCCcCCceEEEEeccCCch--HHHHHHHHHHHHHH
Q 005624 156 KLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE--------GGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEIL 225 (687)
Q Consensus 156 ~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~Y--~~f~~~ak~ld~~L 225 (687)
++...+.+||++|.| .+.+|.-.+.|++++..... +...+.+++..|+..+...| ..+..+..-+...|
T Consensus 82 ~i~~AD~iv~~sP~y-~~~~pa~lK~~IDr~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (200)
T d2z98a1 82 ELKAHDVIVIAAPMY-NFNISTQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTFL 160 (200)
T ss_dssp HHHHCSEEEEECCCB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEECCCSCEEEEEEECSSCCTTSTTCCHHHHHHHHH
T ss_pred HHHhcCcEEEEEccc-cccCCHHHHHHHHHhhcCCccccccCCCchhcccCceEEEEEecCCCccccchhhhHHHHHHHH
Confidence 566789999999999 99999999999999853110 11246677777776665555 23444555667778
Q ss_pred HHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhhh
Q 005624 226 ANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (687)
Q Consensus 226 ~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (687)
.-+|++.+-.+.. +.....++.-+++.++....+.+++
T Consensus 161 ~~~G~~~v~~i~~-~g~~~~~e~~~~~~~~A~~~~~~lv 198 (200)
T d2z98a1 161 GFIGITDVKFVFA-EGIAYGPEMAAKAQSDAKAAIDSIV 198 (200)
T ss_dssp HHTTCCCEEEEEE-CCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCeEEEEEEE-ecccCCHHHHHHHHHHHHHHHHHHh
Confidence 8889986544322 1111234556677766555555543
|
| >d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Quinone reductase domain: NAD(P)H:quinone reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.00094 Score=66.35 Aligned_cols=159 Identities=13% Similarity=0.002 Sum_probs=105.4
Q ss_pred CceEEEEEecC--cchHHHHHHHHHHHHHhhcCCCeeEEecCCCCCCc--------------------------------
Q 005624 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADE-------------------------------- 149 (687)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-------------------------------- 149 (687)
.|+|+|+|||- .+++..+|+.+.+.+++.| ..|+++||-+...+
T Consensus 2 ~KKiLiI~ahP~~~S~~~aL~~~~~~~l~~~G--~eV~~~DLy~~~f~P~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (273)
T d1d4aa_ 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKG--WEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGH 79 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTT--CEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTC
T ss_pred CCeEEEEEcCCCCccHHHHHHHHHHHHHHHCC--CEEEEEECcccCCCCcCCHHHHhhhhcccccccchhhhhhhhcccC
Confidence 58999999994 4778999999999999876 56788888543211
Q ss_pred ----chhHHHhccCCCeEEEEeeCCCCCCCCchHHHHHHHHHhhc--------CCCCCcCCceEEE-EeccCCc--hH--
Q 005624 150 ----EDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK--------EGGEWLQKLKYGV-FGLGNRQ--YE-- 212 (687)
Q Consensus 150 ----~~~~~~~l~~~~~vi~~~sTyG~G~~pdna~~F~~~L~~~~--------~~~~~l~~~~~aV-FGlGds~--Y~-- 212 (687)
-....+.+...+.+||++|.| .+.+|.-.+.|++..-... .....|++++..+ +..|... |.
T Consensus 80 ~~dDi~~~~~~l~~AD~IV~~~P~y-w~s~PA~LK~~iDRV~~~G~af~~~~~~~~g~l~gKk~~~ivTtGg~~~~y~~~ 158 (273)
T d1d4aa_ 80 LSPDIVAEQKKLEAADLVIFQFPLQ-WFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQ 158 (273)
T ss_dssp BCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTT
T ss_pred CcHHHHHHHHHHHhCCEEEEECChh-hcCCCHHHHHHHHHhccCCcccccCCCCCCCcccCCeEEEEEecCCChhhhccc
Confidence 011234577889999999999 8999999999999874311 0122467777544 5555443 31
Q ss_pred HHHHHH----HHHHH-HHHHcCCccccccccccCCCCcHHhHHHHHHHHHHHHHhhhC
Q 005624 213 HFNKIA----KVVDE-ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLR 265 (687)
Q Consensus 213 ~f~~~a----k~ld~-~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~ 265 (687)
.++... +.+.+ .|.-.|.+-+-+....+.+...++....|.+++-+.|..+..
T Consensus 159 g~~~~~~~~l~~~~~~i~~f~G~~~l~~~~~~~~~~~~~~~r~~~le~~~~~l~~L~~ 216 (273)
T d1d4aa_ 159 GIHGDMNVILWPIQSGILHFCGFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWD 216 (273)
T ss_dssp BTTCCHHHHHHHHHTTTTGGGTCEECCCEEETTGGGSCHHHHHHHHHHHHHHHTTGGG
T ss_pred cccCCHHHHHHHHHHHHHHhcCCeecceEEEecCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 122222 22222 233357776666555554555678888999888888877763
|
| >d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: NAD(P)H:flavin oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=4.1e-05 Score=64.24 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=47.1
Q ss_pred ChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEeeCC
Q 005624 450 PLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSN 528 (687)
Q Consensus 450 p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~~~ 528 (687)
-+|||+.+.+|....|+|||+|+|.. .+.++|+|+.. ..|..|+||.+ +.+|+ .+.|..+.|.
T Consensus 31 ~~GQ~v~l~~~~~~~r~ySias~p~~-~~~l~l~ir~~---------~~g~~s~~l~~~l~~G~------~v~v~gP~G~ 94 (97)
T d1qfja1 31 RAGQYLMVVMDERDKRPFSMASTPDE-KGFIELHIGAS---------EINLYAKAVMDRILKDH------QIVVDIPHGE 94 (97)
T ss_dssp CTTCEEEEESSSSCEEEEECCSCTTS-TTCEEEEEC---------------CCHHHHHHHHHHS------EEEEEEEECS
T ss_pred CCCCEEEEEEcCCCcEEEEEEEcCCC-CcEEEEEEeEc---------cCCchhHhHhhcCCCCC------EEEEeccCCc
Confidence 36888877778888899999999974 47888887643 35888999965 55654 4677777888
Q ss_pred ccc
Q 005624 529 FKL 531 (687)
Q Consensus 529 F~l 531 (687)
|+|
T Consensus 95 ~~l 97 (97)
T d1qfja1 95 AWL 97 (97)
T ss_dssp CCC
T ss_pred eEC
Confidence 765
|
| >d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Azotobacter vinelandii [TaxId: 354]
Probab=96.88 E-value=0.00011 Score=61.72 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=37.6
Q ss_pred ChHHHHHHHcCCC---cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCC
Q 005624 450 PLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEK 513 (687)
Q Consensus 450 p~~~~l~~~~p~l---~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~ 513 (687)
-+|||+.+-+|.. ..|+|||||+|. .+.+.++++ +...|.+|+||+++.+|++
T Consensus 32 ~aGQ~~~l~~~~~g~~~~R~ySi~S~p~--~~~~~~~i~---------~~~~G~~S~~L~~l~~Gd~ 87 (99)
T d1a8pa1 32 ENGQFVMIGLEVDGRPLMRAYSIASPNY--EEHLEFFSI---------KVQNGPLTSRLQHLKEGDE 87 (99)
T ss_dssp CTTCEEEEEEEETTEEEEEEEECCSCTT--SSEEEEEEE---------CCSSCSSHHHHTTCCTTCE
T ss_pred CCCcEEEEeccCCCceeEeeccccCCCC--CCcEEEEEE---------EeCCCChhHHHHhCCCCCE
Confidence 4688886544432 249999999996 356776654 2245889999999888763
|
| >d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Flavohemoglobin, central domain species: Alcaligenes eutrophus [TaxId: 106590]
Probab=96.74 E-value=0.00032 Score=59.90 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=40.4
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEeeCCccc
Q 005624 463 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQSNFKL 531 (687)
Q Consensus 463 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v~v~~~~F~l 531 (687)
..|+|||+|+|. .+.++++|+.+ ..++...|..|+||+ ++.+|+ .+.+..+.|+|.|
T Consensus 54 ~~R~ySi~s~p~--~~~~~~~v~~~----~~~~~~~G~~S~~l~~~l~~Gd------~v~v~gP~G~F~L 111 (111)
T d1cqxa2 54 QIRQYSLSDMPN--GRTYRISVKRE----GGGPQPPGYVSNLLHDHVNVGD------QVKLAAPYGSFHI 111 (111)
T ss_dssp EEEEEECCSCCC--SSCEEEEEECC----CBTTBCCCHHHHHHHHHCCTTC------EEEECCCBCSCSC
T ss_pred eeeeccccCCcc--CCCeEEEEEEe----cCCCcccchhHHHHHhcCCCCC------EEEEEccCeEeEC
Confidence 469999999985 35688776532 233445699999997 467765 3566666788876
|
| >d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Dihydroorotate dehydrogenase B, PyrK subunit species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=96.72 E-value=0.0031 Score=52.50 Aligned_cols=49 Identities=12% Similarity=-0.036 Sum_probs=35.5
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCC
Q 005624 464 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 528 (687)
Q Consensus 464 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~ 528 (687)
.|+|||+|.+.. .+.+.+.++++ ..|..|.||.++.+|+ .+.|..+.|+
T Consensus 51 ~R~~Si~~~~~~-~~~i~~~i~~~---------~~g~~t~~l~~l~~Gd------~v~v~GP~G~ 99 (101)
T d1ep3b1 51 RRPISISSWDKR-AKTCTILYRIG---------DETTGTYKLSKLESGA------KVDVMGPLGN 99 (101)
T ss_dssp CEEEECCEEETT-TTEEEEEEECC---------CTTSHHHHHHTCCTTC------EEEEEEEESB
T ss_pred eccceeeeCCCC-CcEEEEEEeec---------CcchhhHHHHhCCCCC------EEEEecccCC
Confidence 599999998763 47788766422 3477899999988876 4566666664
|
| >d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Benzoate dioxygenase reductase species: Acinetobacter sp. [TaxId: 472]
Probab=96.62 E-value=0.0005 Score=57.46 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=46.8
Q ss_pred CChHHHHHHHcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEee
Q 005624 449 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 526 (687)
Q Consensus 449 ~p~~~~l~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~~~v~v~~ 526 (687)
..+|||+.+.+|. -..|+|||+|+|. ++.+.++|.. ...|.+|+||++ +.+|+ .+.|..+.
T Consensus 34 f~pGQ~v~l~i~g~~~~r~ys~~~~~~--~~~~~~~i~~---------~~~G~~s~~l~~~l~~Gd------~v~v~gP~ 96 (100)
T d1krha1 34 FLAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVRN---------VPQGKMSEYLSVQAKAGD------KMSFTGPF 96 (100)
T ss_dssp CCTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEEC---------CTTCHHHHHHHTTCCTTC------EEEEEEEE
T ss_pred CCCCEEEEEEECCcceeEEeeccCCCc--cCceEEEEEE---------eeCCchhhhhhccCCCCC------EEEEeccc
Confidence 3589998766664 3579999999986 4667776642 345889999965 66655 46777778
Q ss_pred CCcc
Q 005624 527 SNFK 530 (687)
Q Consensus 527 ~~F~ 530 (687)
|+|+
T Consensus 97 G~Ff 100 (100)
T d1krha1 97 GSFY 100 (100)
T ss_dssp CSCS
T ss_pred cccC
Confidence 8874
|
| >d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Flavohemoglobin, central domain species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.00061 Score=57.65 Aligned_cols=65 Identities=14% Similarity=0.258 Sum_probs=46.0
Q ss_pred CChHHHHHHHcCC-----CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhc-ccCCCCCCCCCceeeE
Q 005624 449 PPLGVFFAAIVPR-----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPI 522 (687)
Q Consensus 449 ~p~~~~l~~~~p~-----l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~~~v 522 (687)
..+|||+.+.++. ...|+|||||.|. .+.++|+|+. ...|..|+||+ ++.+|+ .+.|
T Consensus 37 ~~pGQ~v~l~~~~~~~~~~~~r~~s~ss~~~--~~~~~i~vk~---------~~~G~~S~~l~~~l~~Gd------~v~v 99 (107)
T d1gvha2 37 YRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVKR---------EEGGQVSNWLHNHANVGD------VVKL 99 (107)
T ss_dssp CCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEEC---------CTTCHHHHHHHHTCCTTC------EEEE
T ss_pred CCCCCEEEEEeeccccCceEEeeccccCCCC--CCceEEEEEE---------cCCcchhHHHHhcCCCCC------EEEE
Confidence 3578887544442 2469999999885 4678887752 34688999997 577765 4677
Q ss_pred EEeeCCcc
Q 005624 523 FVRQSNFK 530 (687)
Q Consensus 523 ~v~~~~F~ 530 (687)
..+.|.|.
T Consensus 100 ~gP~G~Ff 107 (107)
T d1gvha2 100 VAPAGDFF 107 (107)
T ss_dssp EEEECSCC
T ss_pred eCccccCC
Confidence 77788884
|
| >d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Phthalate dioxygenase reductase species: Pseudomonas cepacia, db01 [TaxId: 292]
Probab=96.44 E-value=0.00038 Score=58.79 Aligned_cols=53 Identities=17% Similarity=0.180 Sum_probs=39.3
Q ss_pred ChHHHHHHHcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCc-cchhhc-ccCCCC
Q 005624 450 PLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL-CSTWMK-NSLPME 512 (687)
Q Consensus 450 p~~~~l~~~~p~l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~-~S~~L~-~~~~~~ 512 (687)
.+|||+.+.+|.-..|.|||+|+|.. .+.++|+|+. ...|. +|+||+ ++.+|+
T Consensus 40 ~pGQ~v~v~~~~~~~R~YSl~s~p~~-~~~~~i~Vk~---------~~~g~~~S~~l~~~l~~Gd 94 (103)
T d2piaa1 40 EAGANLTVAVPNGSRRTYSLCNDSQE-RNRYVIAVKR---------DSNGRGGSISFIDDTSEGD 94 (103)
T ss_dssp CTTCEEEEECTTSCEEEEECCSCTTC-CSEEEEEEEC---------CTTSCSHHHHHHHSCCTTC
T ss_pred CCCceEEEEEecceeEEEEEecCCCC-CCEEEEEEEE---------ECCCccchHHHHhcCCCCC
Confidence 47888877777767899999999864 4788888753 23465 599997 566655
|
| >d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Nitrate reductase core domain species: Corn (Zea mays) [TaxId: 4577]
Probab=96.31 E-value=0.0013 Score=56.05 Aligned_cols=63 Identities=8% Similarity=0.071 Sum_probs=45.1
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCcccC
Q 005624 463 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLP 532 (687)
Q Consensus 463 ~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~lp 532 (687)
.+|+||++|+|.. ++.++|+|+.............|..|.||.++.+|+ .+.|..+.|+|...
T Consensus 50 ~~R~Ys~~s~~~~-~~~~~~~ik~~~~~~~~~~~~gG~~s~~l~~l~~Gd------~v~i~gP~G~F~y~ 112 (114)
T d2cnda1 50 CMRAYTPTSMVDE-IGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGS------YIDVKGPLGHVEYT 112 (114)
T ss_dssp EEEEECCCSCTTC-CSEEEEEEECCCSSCBTTBTTCCHHHHHHHHCCTTC------EEEEEEEECSEECC
T ss_pred EEeeeccCCCCCC-CCEEEEEEEeccCCCccccccCchhHHHHhhCCCCC------EEEEECCceeeEEC
Confidence 3799999999974 578898876432211222345699999999988876 46777778888753
|
| >d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Methane monooxygenase component C, MmoC species: Methylococcus capsulatus [TaxId: 414]
Probab=95.99 E-value=0.0012 Score=56.06 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=38.9
Q ss_pred CChHHHHHHHcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcc-cCCCC
Q 005624 449 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPME 512 (687)
Q Consensus 449 ~p~~~~l~~~~p~-l~pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~-~~~~~ 512 (687)
..+|||+.+.+|. -..|+|||+|+|.. .+.++++|+. ...|.+|+||.+ +.+|+
T Consensus 44 f~pGQ~v~l~~~g~~~~R~ySias~p~~-~~~~~~~i~~---------~~~G~~S~~l~~~l~~Gd 99 (109)
T d1tvca1 44 FEPGQFMDLTIPGTDVSRSYSPANLPNP-EGRLEFLIRV---------LPEGRFSDYLRNDARVGQ 99 (109)
T ss_dssp CCSCCEEEECTTSCSSSEEECCBCCSSS-SCCEEEEECC---------CTTSSSHHHHHHHSSSSS
T ss_pred CCCCcEEEEEECCccccccceeccCCcC-CceeEEEEEE---------eCCchHHHHHHhhCCCCC
Confidence 3468887654554 35899999999974 4678887752 346889999964 76665
|
| >d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: cytochrome b5 reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.61 E-value=0.012 Score=50.65 Aligned_cols=61 Identities=11% Similarity=0.012 Sum_probs=41.3
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEeeCCCCccccCccchhhcccCCCCCCCCCceeeEEEeeCCccc
Q 005624 464 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKL 531 (687)
Q Consensus 464 pR~YSIsSsp~~~~~~i~itv~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~~~v~v~~~~F~l 531 (687)
.|+||++|+|.. ++.++++|++............|..|.||.++.+|+ .+.|..+.|.|..
T Consensus 61 ~R~Ys~~s~~~~-~g~~~~~vk~~~~~~~~~~~~Gg~~s~~l~~l~~GD------~v~v~gP~G~F~y 121 (124)
T d1umka1 61 VRPYTPISSDDD-KGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGD------TIEFRGPSGLLVY 121 (124)
T ss_dssp EEEECCSSCTTC-CSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTC------EEEEEEEECSEEE
T ss_pred EEeeccCCcccC-CceEEEEEEecccccccccCCCcchHHHHhcCCCCC------EEEEECCeeeeEE
Confidence 599999999864 578888876432111111224577888999988876 4667777788864
|