Citrus Sinensis ID: 005635

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680------
MSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRGHGESGRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSPVLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMSSDSIGLSRMAEDSSPLKRIRRGLPRACKKV
cccccccccccccccHHHHHHHHHHHHcccEEEEEEEccEEEEEcccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccHHHHHHHHHcccccHHHHHHHHHHcccccccccEEEEEEEEEEccccccccEEEEEEccccccHHHHHHHHHcccccccccccccccccccccEEEEEEcccEEEEEEEEccccEEEEEEEEcccccccEEEEEEEEccccEEEEEEcccccHHHHHHccccccccccccHHHHHHHHHHcccccccEEEEEEEccccccccccccccccccccccccccHHccccccccccccccccccccccHHHHHHHHcccccEEEEEccEEEEEcHHHHccccccEEccccccEEEEEEEcEEccccccccccEEEEEEcccccEEEEEccEEcccccccEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccHHHHHHHHHHHHHccEEEEEEEccEEEEEcccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccEHEccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccEEEEcHHHHcccccccccHHHHHHHHHHHcccccccccEEEEEEEEEEcccccccEEEEEEEccccccHHHHHHHHHccccccccccccEEEEEcccccccccEccccEEEEEcccccEEEEEEEHHHccccccEEEEEcccccccccEEEcEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccEEEEEEEcEEccccccEEEEcccccccccccHHHEEcccccccccccHHccccccccHHHHHHHHHcccccEEEEEccEEEcHHHHHHHccccEcEEcccccEEEEEEEEEEccccccccEEEEEEcccEEEcEEcccccccccccccEEEEEEEEcEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEcHHHccHccccccccHHHcccEEEEccccccccccccccccccccEEEccccccccccccccccccccEEEEEcccccccccccccccccHHHHHHcccccccccc
mshcflspapecsrdhnEWRRFLIYLQGRDMVAIAKFKFwefyilppdqtsnfTNIRVAYKMEktrnasngrghgesgrscqvvrptatkanindsptlpvniVKETVSRGNACIQARvsdtsednfspvlkfspvvgdrlssestietcsrpepravkqagpleknfvradpsYLQTLGQAHSGWIFGAIAELvdnsrdakaTKLEISIESIYFkkagkdipmlsiiddghgmthqdVVRMtyfghkqpdaddpnrigrfgvgfktgamrLGKDALVLTQTADSRSIAFLSQSLnqgkdnleipivsyyrkgqfmeldTVVQSEATAKYNLksikefspfnkyligekaglfqdkctgtQIYIWNldqwgsnyclewdnglnggssfhqgdilirsrrirsrpgqisqkvpldyslrSYLEVIFLVPRMKIYVQGslvrsrplaksLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVggmihngdtgrgvigvidvsdlmdegnGLVWVHnnkqgfldcepYARLEEWLGKVADeywdnkfdslnvvkdgalykpdqewvqcnkcrkwrmldpgfdtkslpvewfcymkpfeglcdlpeqkvdaGVVTVSakrtgydsrenslpfegiatikvedmssdsiglsrmaedssplkrirrglprackkv
mshcflspapecsrdhnEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKtrnasngrghgesgrscQVVRPTatkanindsptlpvNIVKETVSRGNACIQArvsdtsednfspvlkfspvvgdrlssestietcsrpepravkqagplEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISiesiyfkkagkdIPMLSIIDDGHGMTHQDVVRMTYFGhkqpdaddpnriGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLsqslnqgkdnlEIPIVSYYRKGQFMELDTVVQSEATAKYnlksikefspFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRsrrirsrpgqisqkvpldyslRSYLEVIFLVPRMKIYVQGslvrsrplaksLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVkdgalykpdqewvqCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVsakrtgydsrenslpfegiatikvedmssdsiglsrmaedssplkrirrglprackkv
MSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRGHGESGRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSPVLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILirsrrirsrPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMSSDSIGLSRMAEDSSPLKRIRRGLPRACKKV
**************DHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYK*************************************LPVNIVKETVSRGNACIQA**************************************************FVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHK*******NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRS**GQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKR*************GIA**************************************
****FL*************RRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAY************************************************************************************************************VRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYF****************GVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGL*************************************************************************
MSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTR***************QVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSPVLKFSPVVG*************RPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMSSDSIGLSRMAEDSSPLKRIRRG********
**HCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKT*********************************LPVNIVKETVSRGNACI*********************************TCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAK********NSLPFEGIATIKVEDM*******************************
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MSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRGHGESGRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSPVLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMSSDSIGLSRMAEDSSPLKRIRRGLPRACKKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query686 2.2.26 [Sep-21-2011]
Q14149 939 MORC family CW-type zinc yes no 0.584 0.427 0.317 6e-48
Q8BMD7 928 MORC family CW-type zinc no no 0.641 0.474 0.310 4e-45
Q8TE76 937 MORC family CW-type zinc no no 0.599 0.438 0.309 1e-41
Q8C5W4 1022 MORC family CW-type zinc no no 0.361 0.242 0.292 2e-23
Q9Y6X9 1032 MORC family CW-type zinc no no 0.364 0.242 0.297 3e-23
Q69ZX6 1030 MORC family CW-type zinc no no 0.364 0.242 0.294 8e-23
Q9WVL5 950 MORC family CW-type zinc no no 0.380 0.274 0.275 2e-22
Q86VD1 984 MORC family CW-type zinc no no 0.591 0.412 0.217 2e-20
>sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3 Back     alignment and function desciption
 Score =  192 bits (489), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 146/460 (31%), Positives = 232/460 (50%), Gaps = 59/460 (12%)

Query: 173 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGH 232
           P +L T   +H+ W F A+AEL+DN+ D      +I I+    K    D   L+  D+G+
Sbjct: 16  PKFLHTNSTSHT-WPFSAVAELIDNAYDPDVNAKQIWID----KTVINDHICLTFTDNGN 70

Query: 233 GMTHQDVVRMTYFGHKQPDADDPN-RIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFL 291
           GMT   + +M  FG       + +  +G +G GFK+G+MRLGKDA+V T+  +S S+  L
Sbjct: 71  GMTSDKLHKMLSFGFSDKVTMNGHVPVGLYGNGFKSGSMRLGKDAIVFTKNGESMSVGLL 130

Query: 292 SQSLNQ--GKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFN--KYLIG 347
           SQ+  +    +++ +PIV++ +  Q + L       A +K +L +I E S F+  + L+ 
Sbjct: 131 SQTYLEVIKAEHVVVPIVAFNKHRQMINL-------AESKASLAAILEHSLFSTEQKLLA 183

Query: 348 EKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDI-LIRSRRIRSRPGQ 406
           E   +   K  GT+I IWNL  + +    E+D   +        D+  I  ++   +  +
Sbjct: 184 ELDAIIGKK--GTRIIIWNLRSYKN--ATEFDFEKDKYDIRIPEDLDEITGKKGYKKQER 239

Query: 407 ISQKVP-LDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGI----IMGK 461
           + Q  P  DYSLR+Y  +++L PRM+I ++G  V+++ ++KSL    +E  +     + K
Sbjct: 240 MDQIAPESDYSLRAYCSILYLKPRMQIILRGQKVKTQLVSKSL--AYIERDVYRPKFLSK 297

Query: 462 SAHLTLGRCQLEWEQMNC------GIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDV 515
           +  +T G         NC      GI +Y   RLI+AY++VG  +   + G GV+G+I  
Sbjct: 298 TVRITFG--------FNCRNKDHYGIMMYHRNRLIKAYEKVGCQLRANNMGVGVVGII-- 347

Query: 516 SDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWD------NKFDSLNVVKDG 569
                E N L   H NKQ F     Y      LG+  ++YW+      N    LN+  + 
Sbjct: 348 -----ECNFLKPTH-NKQDFDYTNEYRLTITALGEKLNDYWNEMKVKKNTEYPLNLPVED 401

Query: 570 ALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP 609
              +PDQ WVQC+ C KWR L  G D   LP +W+C   P
Sbjct: 402 IQKRPDQTWVQCDACLKWRKLPDGMD--QLPEKWYCSNNP 439

Homo sapiens (taxid: 9606)
>sp|Q8BMD7|MORC4_MOUSE MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2 Back     alignment and function description
>sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2 Back     alignment and function description
>sp|Q8C5W4|MOR2B_MOUSE MORC family CW-type zinc finger protein 2B OS=Mus musculus GN=Morc2b PE=2 SV=2 Back     alignment and function description
>sp|Q9Y6X9|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2 PE=1 SV=2 Back     alignment and function description
>sp|Q69ZX6|MOR2A_MOUSE MORC family CW-type zinc finger protein 2A OS=Mus musculus GN=Morc2a PE=1 SV=2 Back     alignment and function description
>sp|Q9WVL5|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1 PE=2 SV=1 Back     alignment and function description
>sp|Q86VD1|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query686
255583448754 zinc finger protein, putative [Ricinus c 0.981 0.892 0.672 0.0
359476999760 PREDICTED: MORC family CW-type zinc fing 0.995 0.898 0.633 0.0
296088514596 unnamed protein product [Vitis vinifera] 0.820 0.944 0.697 0.0
356495297692 PREDICTED: MORC family CW-type zinc fing 0.846 0.839 0.622 0.0
357484261577 MORC family CW-type zinc finger protein 0.807 0.960 0.634 0.0
115468994 792 Os06g0622000 [Oryza sativa Japonica Grou 0.946 0.819 0.520 0.0
222635901 800 hypothetical protein OsJ_22008 [Oryza sa 0.946 0.811 0.520 0.0
218198566766 hypothetical protein OsI_23737 [Oryza sa 0.896 0.802 0.482 1e-178
413954785785 hypothetical protein ZEAMMB73_569962 [Ze 0.855 0.747 0.506 1e-172
242096394758 hypothetical protein SORBIDRAFT_10g02439 0.897 0.812 0.458 1e-169
>gi|255583448|ref|XP_002532483.1| zinc finger protein, putative [Ricinus communis] gi|223527808|gb|EEF29907.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/690 (67%), Positives = 538/690 (77%), Gaps = 17/690 (2%)

Query: 1   MSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAY 60
           + HCFL PA E +RD NEW+RFL YLQ R+ V IAKF+F  FYILPP +  NF++++VAY
Sbjct: 78  LPHCFLRPAAENNRDQNEWQRFLSYLQKRNSVGIAKFEFCNFYILPPAEAYNFSHVKVAY 137

Query: 61  KMEKTRNASNGRGHGES----GRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQ 116
           + EKT N  + + H ES      +CQ V        +    T+P    +   +R N  ++
Sbjct: 138 R-EKTSNKYSHQKHCESVVDTTEACQFV--GCNLDPVETCGTVPSQSAERFTARKNVHMK 194

Query: 117 ARVSDTSEDNFSPVLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYL 176
           A      EDN +  +KFS  +GD L  E TI    R + RAVKQ GPL +N+VRADPSYL
Sbjct: 195 ASDQGIIEDNETSYVKFSQSIGDPLGHEPTI----RHQRRAVKQDGPLMENYVRADPSYL 250

Query: 177 QTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 236
           QTLGQAHSGWIFGAIAELVDNSRDAKA++L+I IE+IY K+AGKDIPMLSIIDDGHGMTH
Sbjct: 251 QTLGQAHSGWIFGAIAELVDNSRDAKASRLDILIETIYSKRAGKDIPMLSIIDDGHGMTH 310

Query: 237 QDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLN 296
           Q+V+RMT FGHKQPD DD +RIGRFGVGFKTGAMRLG+DALVLTQT+ SRSIAFLSQSLN
Sbjct: 311 QEVMRMTCFGHKQPDVDDLDRIGRFGVGFKTGAMRLGRDALVLTQTSCSRSIAFLSQSLN 370

Query: 297 QGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDK 356
           +G DNLEIPIVSY RKGQFME+DT VQSEA AK NLK+IKE S F+KYLIGEKAGLF  K
Sbjct: 371 EGNDNLEIPIVSYRRKGQFMEVDTNVQSEALAKNNLKAIKELSHFDKYLIGEKAGLFHGK 430

Query: 357 CTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYS 416
            TGTQIYIWNLD+WGS YCL+W  GLNG SSFHQGDILIRS+R+RSRPGQ++QKVPLDYS
Sbjct: 431 HTGTQIYIWNLDEWGSGYCLDWTTGLNGWSSFHQGDILIRSKRVRSRPGQMTQKVPLDYS 490

Query: 417 LRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQ 476
           LRSYLEVIFLVPRM+IYVQGSLV+SRPLAKSL+ TC  T  I+GK  HLTLGRCQLEWEQ
Sbjct: 491 LRSYLEVIFLVPRMRIYVQGSLVKSRPLAKSLSMTCEATDNILGKRVHLTLGRCQLEWEQ 550

Query: 477 MNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFL 536
            N GIFLYWHGRLIEAYKRVGGM H G  G GVIGVIDV+DLMD GNG VWVH+NKQGF 
Sbjct: 551 GNSGIFLYWHGRLIEAYKRVGGMAH-GKVGLGVIGVIDVTDLMDNGNGRVWVHSNKQGFQ 609

Query: 537 DCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDT 596
           DCEPY RLE WLGK  DEYWDN FD++ + K G LYKPDQEWVQC++CRKWR+L  G+D 
Sbjct: 610 DCEPYVRLENWLGKKVDEYWDNNFDTVPLKKGGVLYKPDQEWVQCDRCRKWRILCAGYDR 669

Query: 597 KSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMS 656
           K+L +EWFCYM+PF+G C+ PEQK   GV+TVS +R+GYD RE++   E  A I  E  S
Sbjct: 670 KNLLLEWFCYMEPFQGSCETPEQKAKHGVITVSTRRSGYD-REDA---EDDAIITSEGNS 725

Query: 657 SDSIGLSRMAEDSSPLKRIRRGLPRACKKV 686
            + +  ++        KRIR+GLPRACKKV
Sbjct: 726 DEDVDQTKKVGKQG-FKRIRKGLPRACKKV 754

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359476999|ref|XP_002263942.2| PREDICTED: MORC family CW-type zinc finger protein 2B-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296088514|emb|CBI37505.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356495297|ref|XP_003516515.1| PREDICTED: MORC family CW-type zinc finger protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|357484261|ref|XP_003612418.1| MORC family CW-type zinc finger protein [Medicago truncatula] gi|355513753|gb|AES95376.1| MORC family CW-type zinc finger protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|115468994|ref|NP_001058096.1| Os06g0622000 [Oryza sativa Japonica Group] gi|51090841|dbj|BAD35369.1| Zinc finger CW-type coiled-coil domain protein 3-like [Oryza sativa Japonica Group] gi|113596136|dbj|BAF20010.1| Os06g0622000 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|222635901|gb|EEE66033.1| hypothetical protein OsJ_22008 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|218198566|gb|EEC80993.1| hypothetical protein OsI_23737 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|413954785|gb|AFW87434.1| hypothetical protein ZEAMMB73_569962 [Zea mays] Back     alignment and taxonomy information
>gi|242096394|ref|XP_002438687.1| hypothetical protein SORBIDRAFT_10g024390 [Sorghum bicolor] gi|241916910|gb|EER90054.1| hypothetical protein SORBIDRAFT_10g024390 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query686
UNIPROTKB|F1MFY1 960 MORC3 "Uncharacterized protein 0.638 0.456 0.326 4.7e-50
ZFIN|ZDB-GENE-030131-1502 1079 morc3a "MORC family CW-type zi 0.709 0.451 0.301 7e-50
UNIPROTKB|F1PFJ7 939 MORC3 "Uncharacterized protein 0.632 0.462 0.323 1.1e-48
UNIPROTKB|F1SGX2 940 MORC3 "Uncharacterized protein 0.635 0.463 0.315 1e-47
UNIPROTKB|Q14149 939 MORC3 "MORC family CW-type zin 0.626 0.457 0.313 7.7e-47
UNIPROTKB|F1P2D9 926 MORC3 "Uncharacterized protein 0.701 0.519 0.293 1.2e-43
ZFIN|ZDB-GENE-040801-98 763 morc3b "MORC family CW-type zi 0.616 0.554 0.323 7.1e-42
UNIPROTKB|Q8TE76 937 MORC4 "MORC family CW-type zin 0.638 0.467 0.301 5e-39
UNIPROTKB|F1P705 898 MORC4 "Uncharacterized protein 0.619 0.473 0.298 1.6e-38
MGI|MGI:1922996 928 Morc4 "microrchidia 4" [Mus mu 0.596 0.440 0.304 4.6e-35
UNIPROTKB|F1MFY1 MORC3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 529 (191.3 bits), Expect = 4.7e-50, P = 4.7e-50
 Identities = 159/487 (32%), Positives = 248/487 (50%)

Query:   173 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGH 232
             P +L T   +H+ W F A+AEL+DN+ D      +I I+    K    D   L+  D+G+
Sbjct:    26 PKFLHTNSTSHT-WPFSAVAELIDNAYDPDVNAKQIWID----KTVINDCICLTFTDNGN 80

Query:   233 GMTHQDVVRMTYFGHKQP-DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFL 291
             GMT   + +M  FG  +    +D   +G +G GFK+G+MRLGKDA+V T+  +S S+ FL
Sbjct:    81 GMTSDKLHKMLSFGFSEKVTMNDHVPVGLYGNGFKSGSMRLGKDAMVFTKNEESMSVGFL 140

Query:   292 SQS-LNQGK-DNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNK--YLIG 347
             SQ+ L   K +++ +PIVS+ ++     LD+  +S+A+    L +I E S F+K   L+ 
Sbjct:   141 SQTYLEVIKAEHVVVPIVSFNKQDIRQVLDST-ESKAS----LAAILEHSLFSKEQQLLA 195

Query:   348 EKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILXXXXXXXXXPGQ- 406
             E   +   K  GT+I IWNL  + S    E+D   +        D+            + 
Sbjct:   196 ELDAIIGKK--GTRIIIWNLRSYKS--ATEFDFDKDKYDIRIPEDLDETAGKKGYKKQER 251

Query:   407 ISQKVP-LDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSL---NKTCVETGIIMGKS 462
             + Q  P  DYSLR+Y  +++L PRM+I ++G  V+++ ++KSL    +       +  K+
Sbjct:   252 MDQIAPESDYSLRAYCSILYLKPRMQIILRGQKVKTQLVSKSLAYIERDIYRPKFLTNKT 311

Query:   463 AHLTLG-RCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDE 521
               +T G  C+    + + GI +Y   RLI+AY++VG  +   + G GV+G+ID   L   
Sbjct:   312 VRITFGFNCR---NKDHYGIMMYHRNRLIKAYEKVGCQLRANNMGVGVVGIIDCYFLKP- 367

Query:   522 GNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDN-KFDS-----LNVVKDGALYKPD 575
                    HN KQ F     Y      LG   ++YW+  K        LN+  +    +PD
Sbjct:   368 ------THN-KQDFDYTNEYRLTITALGDKLNDYWNEMKVKKHAEYPLNLPVEDIQKRPD 420

Query:   576 QEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP---FEGLCDLPEQKVDAGVVTVSAKR 632
             Q WVQC+ C KWR L  G D   LP +W+C   P   F   CD+PE+  D  VV  + ++
Sbjct:   421 QTWVQCDSCLKWRKLPDGID--QLPEKWYCSNNPDPQFRN-CDVPEEPEDEDVVHPTYEK 477

Query:   633 TGYDSRE 639
             T Y  ++
Sbjct:   478 T-YKKKD 483
GO:0051457 "maintenance of protein location in nucleus" evidence=IEA
GO:0050821 "protein stabilization" evidence=IEA
GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA
GO:0045111 "intermediate filament cytoskeleton" evidence=IEA
GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA
GO:0016605 "PML body" evidence=IEA
GO:0016235 "aggresome" evidence=IEA
GO:0009791 "post-embryonic development" evidence=IEA
GO:0007569 "cell aging" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
ZFIN|ZDB-GENE-030131-1502 morc3a "MORC family CW-type zinc finger 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PFJ7 MORC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGX2 MORC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q14149 MORC3 "MORC family CW-type zinc finger protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2D9 MORC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-98 morc3b "MORC family CW-type zinc finger 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TE76 MORC4 "MORC family CW-type zinc finger protein 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P705 MORC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1922996 Morc4 "microrchidia 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00006004001
SubName- Full=Chromosome chr4 scaffold_162, whole genome shotgun sequence; (596 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query686
pfam13589134 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr 4e-22
pfam0749650 pfam07496, zf-CW, CW-type Zinc Finger 2e-11
COG0323 638 COG0323, MutL, DNA mismatch repair enzyme (predict 6e-07
TIGR00585312 TIGR00585, mutl, DNA mismatch repair protein MutL 1e-06
PRK00095 617 PRK00095, mutL, DNA mismatch repair protein; Revie 2e-06
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 2e-04
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 3e-04
PRK05218613 PRK05218, PRK05218, heat shock protein 90; Provisi 5e-04
COG0326623 COG0326, HtpG, Molecular chaperone, HSP90 family [ 0.001
>gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information 
 Score = 92.4 bits (230), Expect = 4e-22
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 7/121 (5%)

Query: 188 FGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGH 247
             AIAEL+DNS DA AT ++ISI+        +    +SI D+G GM+++++      G 
Sbjct: 4   EDAIAELIDNSIDADATNVKISIDPD------RGEDGISIEDNGGGMSYEELRNALKLGR 57

Query: 248 KQPDADDPNR-IGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI 306
              + +  +  +GR G+G K  ++ LG+   V ++     S   L       +   ++P 
Sbjct: 58  SSKEGERDSTTLGRKGIGMKLASLSLGRKLTVTSKKEGESSTLTLDLDDIDKEGEWDLPE 117

Query: 307 V 307
           +
Sbjct: 118 L 118

This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 134
>gnl|CDD|219431 pfam07496, zf-CW, CW-type Zinc Finger Back     alignment and domain information
>gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233035 TIGR00585, mutl, DNA mismatch repair protein MutL Back     alignment and domain information
>gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed Back     alignment and domain information
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional Back     alignment and domain information
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 686
KOG1845 775 consensus MORC family ATPases [Cell cycle control, 99.94
COG0326623 HtpG Molecular chaperone, HSP90 family [Posttransl 99.86
PTZ00130 814 heat shock protein 90; Provisional 99.84
PRK05218 613 heat shock protein 90; Provisional 99.83
PRK14083 601 HSP90 family protein; Provisional 99.83
KOG1845 775 consensus MORC family ATPases [Cell cycle control, 99.81
PTZ00272 701 heat shock protein 83 kDa (Hsp83); Provisional 99.79
KOG0019656 consensus Molecular chaperone (HSP90 family) [Post 99.68
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 99.67
KOG0020 785 consensus Endoplasmic reticulum glucose-regulated 99.63
PF0749650 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zi 99.6
COG0323 638 MutL DNA mismatch repair enzyme (predicted ATPase) 99.5
PRK00095 617 mutL DNA mismatch repair protein; Reviewed 99.42
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 99.31
PRK05559 631 DNA topoisomerase IV subunit B; Reviewed 99.21
TIGR01055 625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 99.19
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 99.17
COG1389538 DNA topoisomerase VI, subunit B [DNA replication, 99.11
PRK05644 638 gyrB DNA gyrase subunit B; Validated 99.11
TIGR01059 654 gyrB DNA gyrase, B subunit. This model describes t 99.06
COG0187 635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 99.01
TIGR01058 637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 98.97
KOG1979 694 consensus DNA mismatch repair protein - MLH1 famil 98.91
KOG1978 672 consensus DNA mismatch repair protein - MLH2/PMS1/ 98.85
smart00433594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 98.81
PHA02569602 39 DNA topoisomerase II large subunit; Provisional 98.78
TIGR01052488 top6b DNA topoisomerase VI, B subunit. This model 98.76
PRK04184535 DNA topoisomerase VI subunit B; Validated 98.76
PTZ00109 903 DNA gyrase subunit b; Provisional 98.72
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 98.66
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 98.62
PLN03237 1465 DNA topoisomerase 2; Provisional 98.6
PLN03128 1135 DNA topoisomerase 2; Provisional 98.6
PRK14867 659 DNA topoisomerase VI subunit B; Provisional 98.22
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 98.15
KOG1977 1142 consensus DNA mismatch repair protein - MLH3 famil 97.73
COG3290537 CitA Signal transduction histidine kinase regulati 97.27
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 97.18
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 97.1
PRK10604433 sensor protein RstB; Provisional 97.04
PRK09470461 cpxA two-component sensor protein; Provisional 96.83
PRK09467435 envZ osmolarity sensor protein; Provisional 96.8
PRK10364457 sensor protein ZraS; Provisional 96.76
PRK10755356 sensor protein BasS/PmrB; Provisional 96.68
PRK09303380 adaptive-response sensory kinase; Validated 96.63
COG0642336 BaeS Signal transduction histidine kinase [Signal 96.59
PRK11086542 sensory histidine kinase DcuS; Provisional 96.54
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 96.54
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 96.49
PRK11006430 phoR phosphate regulon sensor protein; Provisional 96.49
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 96.48
PRK10549466 signal transduction histidine-protein kinase BaeS; 96.23
PRK11100475 sensory histidine kinase CreC; Provisional 96.21
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 96.21
PRK10815485 sensor protein PhoQ; Provisional 96.11
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 96.08
PRK11360607 sensory histidine kinase AtoS; Provisional 95.87
COG4191603 Signal transduction histidine kinase regulating C4 95.85
PRK10337449 sensor protein QseC; Provisional 95.76
PRK15347921 two component system sensor kinase SsrA; Provision 95.61
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 95.45
PRK11091779 aerobic respiration control sensor protein ArcB; P 95.42
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 95.36
PRK09835482 sensor kinase CusS; Provisional 95.31
PRK13837828 two-component VirA-like sensor kinase; Provisional 95.2
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 95.1
PRK11466914 hybrid sensory histidine kinase TorS; Provisional 94.82
TIGR02956968 TMAO_torS TMAO reductase sytem sensor TorS. This p 94.76
PRK10490895 sensor protein KdpD; Provisional 94.66
PRK11107919 hybrid sensory histidine kinase BarA; Provisional 94.27
COG3850574 NarQ Signal transduction histidine kinase, nitrate 94.11
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 93.99
PRK10841924 hybrid sensory kinase in two-component regulatory 93.96
PRK10547670 chemotaxis protein CheA; Provisional 93.73
PRK03660146 anti-sigma F factor; Provisional 93.53
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 93.48
PRK04069161 serine-protein kinase RsbW; Provisional 93.42
PRK10618894 phosphotransfer intermediate protein in two-compon 93.31
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 92.68
COG4585365 Signal transduction histidine kinase [Signal trans 92.59
PRK099591197 hybrid sensory histidine kinase in two-component r 92.36
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 91.24
PRK11644495 sensory histidine kinase UhpB; Provisional 91.06
PF07744119 SPOC: SPOC domain; InterPro: IPR012921 Spen (split 90.91
PRK13557540 histidine kinase; Provisional 90.82
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 90.33
COG3920221 Signal transduction histidine kinase [Signal trans 88.37
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 88.23
COG4192673 Signal transduction histidine kinase regulating ph 87.89
PRK13560807 hypothetical protein; Provisional 87.5
COG0643716 CheA Chemotaxis protein histidine kinase and relat 87.47
COG2972456 Predicted signal transduction protein with a C-ter 86.97
COG5002459 VicK Signal transduction histidine kinase [Signal 86.41
COG5000712 NtrY Signal transduction histidine kinase involved 86.29
COG4251750 Bacteriophytochrome (light-regulated signal transd 81.84
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=99.94  E-value=4.4e-27  Score=269.83  Aligned_cols=416  Identities=21%  Similarity=0.233  Sum_probs=286.9

Q ss_pred             eeccCCCCcceeecChHHHHHhhccccCCHHHHHHHHHhccccc---CCCccEEEEEeceeccCCCCcCEEEEE-----e
Q 005635          158 VKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA---KATKLEISIESIYFKKAGKDIPMLSII-----D  229 (686)
Q Consensus       158 ~~~~~~~~~~~v~l~p~~L~~lgt~~~~~~~~AIaELIdNS~DA---~At~I~I~i~~~~~~~~~~~~~~L~I~-----D  229 (686)
                      ++....++-.+++++|+|||+++++| +|.++|++||+|||+|.   +|+.+.|.--   +.........++|.     |
T Consensus       119 ~~~~~~G~~~~iivhpkflhsnatsh-k~a~~a~aeLldnalDEi~~~~tf~~vd~I---~p~~d~~i~a~~v~~~~~s~  194 (775)
T KOG1845|consen  119 VIIGKSGGTLHIIVHPKFLHSNATSH-KWAKGAIAELLDNALDEITNGATFVRVDYI---NPVMDIFIRALVVQLKRISD  194 (775)
T ss_pred             ceeccCCceeEEEEehhhhcCCCccc-ccccChhhhhccccccccccccceEEeeee---cccccccceeEEeeccceec
Confidence            34455555699999999999999999 79999999999999998   5666544321   11111223445555     7


Q ss_pred             CCCCCCHHHHHHhhhcccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEeC------CCCceeEEEEEec--CCCee
Q 005635          230 DGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA------DSRSIAFLSQSLN--QGKDN  301 (686)
Q Consensus       230 NG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~------g~~s~~~ls~sf~--~g~~~  301 (686)
                      ||+||.++-+..+|.+|.+.+. +-...+|+||+||+++.|++|.++.|++|..      ..+++|+++++|.  ++..+
T Consensus       195 ~gg~~~~~~i~~~m~l~~~~k~-e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t~~~d  273 (775)
T KOG1845|consen  195 DGGGMKPEVIRKCMSLGYSSKK-EANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKTGKRD  273 (775)
T ss_pred             cccccCHHHHHHHHHhhhhhhh-hhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeeccccCCc
Confidence            7999999999999999988775 3467899999999999999999999999942      2578999999994  57889


Q ss_pred             EEEec----cccCCC---CcEEEEEecCcchhhhhhhhhh-----hcccCCCchh--hHHHH-hh------h----cc-c
Q 005635          302 LEIPI----VSYYRK---GQFMELDTVVQSEATAKYNLKS-----IKEFSPFNKY--LIGEK-AG------L----FQ-D  355 (686)
Q Consensus       302 i~VP~----~~~~~~---Gt~I~l~~~~~se~~~~~~l~~-----I~kySpF~s~--~I~e~-~~------~----~~-~  355 (686)
                      ++||+    ..++..   -..|..  +..  ..|..++..     +++|+||.+.  .+.+. ..      .    +. .
T Consensus       274 ~iv~~~~i~~~~e~~~~~~~~i~~--~s~--~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~~~~~~  349 (775)
T KOG1845|consen  274 FIVPMRLIKMDYEKSDQLWQGILY--KSG--VDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGHQFNIM  349 (775)
T ss_pred             eeEecchhhhhhhcccccccceee--ccc--cccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcchhhhc
Confidence            99998    444431   112222  111  223344444     9999999984  22220 00      1    11 2


Q ss_pred             CCCCcEEEEEcccccC---CcceeeccCCCCCCCCCCCCCeEeecccccCCCCcccccCcchhhHHHHHhhhhcC--CCe
Q 005635          356 KCTGTQIYIWNLDQWG---SNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLV--PRM  430 (686)
Q Consensus       356 ~~~GT~IiI~nL~r~~---~~~eLDF~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYlsiLYL~--Prm  430 (686)
                      ..+||.+|+|++++|.   +-.++||+.+        +++|.                -...++++.|.++||+.  ++|
T Consensus       350 ~~~g~~~I~Y~~~~~~~~~g~~e~df~l~--------~~~i~----------------~~~~~~~~s~~sil~~~~~~~~  405 (775)
T KOG1845|consen  350 NKPGTDVIIYNLRRWKGDEGILELDFDLD--------PHVIP----------------WTYCHSHLSEASILLLTRRLRF  405 (775)
T ss_pred             cCCCceeeeechhhhcccccceeeccccC--------ccccc----------------ccchhhhhhcccccchhccccc
Confidence            4699999999997663   2366777654        23432                13456899999999975  899


Q ss_pred             EEEEcCeeecccccccccCceeee--ccccc--c-----eEEEEEEceeccccc-ceeceEEEEEcCceee----eeeee
Q 005635          431 KIYVQGSLVRSRPLAKSLNKTCVE--TGIIM--G-----KSAHLTLGRCQLEWE-QMNCGIFLYWHGRLIE----AYKRV  496 (686)
Q Consensus       431 ~I~LnG~~V~~~~i~~~L~~~~v~--~~~~~--~-----~~V~It~Gf~~~e~~-~~~~Gi~vY~nnRLI~----~~~kV  496 (686)
                      .+.+.|+.+.++.+....+++...  .+...  +     ..+....|+.+...+ -...|+.|||.+|||+    ++||.
T Consensus       406 ~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~~~~k~  485 (775)
T KOG1845|consen  406 KSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCRPFVKI  485 (775)
T ss_pred             hhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcchhhcccceeee
Confidence            999999999999988766554321  11100  0     111223455544322 2456999999999999    99999


Q ss_pred             cccccCCCCCccEEEEEecCCccccCCCceecccCCCCCCCchhHHHHHHHHHHHHHHHHhhcccccccccc---cCCCC
Q 005635          497 GGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKD---GALYK  573 (686)
Q Consensus       497 g~q~~~~~~grGVIGVve~~~l~~p~~~~~~pthnKQdFe~t~~y~~L~~~L~e~l~eYW~~~~~~~~~~~~---~~~~~  573 (686)
                      ++.  ....++++++++..+ +.       +++|++|+|+.+-.-+.++.++.++++.||...++.+.+...   ...+.
T Consensus       486 ~n~--~~s~~~~~~~il~~n-~~-------~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q~~~~~~~  555 (775)
T KOG1845|consen  486 DNA--TGSLGQAVIPILVGN-FV-------ETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQLQKERES  555 (775)
T ss_pred             cCC--Cccccccccceeccc-cc-------ccCCCccccccccccccchhhhhhcccccccccccccCccchhhhhhhcc
Confidence            874  457899999999998 33       469999999999989999999999999999999998876521   11111


Q ss_pred             -----CCCceecCccchhhccCCCCCCCCCCCCCceeccCC---CCCCCCCCcccccCC
Q 005635          574 -----PDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP---FEGLCDLPEQKVDAG  624 (686)
Q Consensus       574 -----~~~~wvQCd~C~KWR~lp~~~~~~~lp~~W~C~~n~---~~~~C~~pEe~~~~~  624 (686)
                           ....--||-   +-  ++.   ...--..|+|..++   .++.|+-+-.....+
T Consensus       556 ~~~~~Ke~~~~~~~---~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  606 (775)
T KOG1845|consen  556 TTTVVKEEKPENNH---LS--SSK---RTQRRKSTGRAISVAVEKFNLRSGPNGRGQID  606 (775)
T ss_pred             cceeecccccccch---hc--chh---ccccccccccccccchhhhccccccCCcCCcc
Confidence                 111112221   11  111   12234589999998   357776655544444

>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] Back     alignment and domain information
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>PTZ00109 DNA gyrase subunit b; Provisional Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query686
2e61_A69 Zinc finger CW-type PWWP domain protein 1; ZF-CW d 3e-12
2l7p_A100 Histone-lysine N-methyltransferase ASHH2; CW-domai 7e-12
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 7e-07
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 8e-07
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 8e-07
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 1e-06
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 4e-05
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 6e-05
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 6e-05
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 6e-05
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 7e-05
2o1u_A666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 9e-05
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 9e-05
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 1e-04
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 1e-04
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 1e-04
3peh_A281 Endoplasmin homolog; structural genomics, structur 1e-04
2ioq_A624 Chaperone protein HTPG; heat shock protein, HSP90; 4e-04
1y4s_A559 Chaperone protein HTPG; HSP90, molecular chaperone 6e-04
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Length = 69 Back     alignment and structure
 Score = 61.1 bits (148), Expect = 3e-12
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 577 EWVQC--NKCRKWRMLDPGFDTKSLPVEWFCYMK--PFEGLCDLPEQK 620
            WVQC    C KWR L    D   LP  W C          CD+PE+ 
Sbjct: 17  VWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEET 64
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Length = 100 Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Length = 333 Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Length = 365 Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Length = 367 Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Length = 348 Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Length = 272 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Length = 236 Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Length = 228 Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Length = 264 Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Length = 269 Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Length = 256 Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Length = 666 Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Length = 220 Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Length = 677 Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} Length = 239 Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Length = 235 Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Length = 281 Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Length = 624 Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Length = 559 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query686
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 99.85
3peh_A281 Endoplasmin homolog; structural genomics, structur 99.85
1y4s_A559 Chaperone protein HTPG; HSP90, molecular chaperone 99.83
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 99.82
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 99.81
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 99.8
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 99.8
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 99.8
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 99.79
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 99.79
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 99.77
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 99.76
2ioq_A624 Chaperone protein HTPG; heat shock protein, HSP90; 99.75
2o1u_A666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 99.74
2e61_A69 Zinc finger CW-type PWWP domain protein 1; ZF-CW d 99.68
2l7p_A100 Histone-lysine N-methyltransferase ASHH2; CW-domai 99.59
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 99.45
1ei1_A391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 99.43
3cwv_A369 DNA gyrase, B subunit, truncated; structural genom 99.41
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 99.4
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 99.39
4duh_A220 DNA gyrase subunit B; structure-based drug design, 99.37
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 99.36
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 99.32
1kij_A390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 99.32
1s16_A390 Topoisomerase IV subunit B; two-domain protein com 99.29
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 99.27
3lnu_A408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 99.22
1zxm_A400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 99.18
1pvg_A418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 99.08
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 99.0
2q2e_B621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 98.36
1mu5_A471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 98.36
4gfh_A 1177 DNA topoisomerase 2; topoisomerase, protein-DNA co 98.32
2zbk_B530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 98.29
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 97.58
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 97.44
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 97.28
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 97.27
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 97.24
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 97.23
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 97.17
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 97.17
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 97.13
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 97.09
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 97.08
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 97.05
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 97.03
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 97.03
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 97.0
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 96.92
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 96.91
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 96.78
3ehg_A128 Sensor kinase (YOCF protein); GHL ATPase domain, t 96.68
1b3q_A379 Protein (chemotaxis protein CHEA); histine kinase, 96.68
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 96.5
3zxo_A129 Redox sensor histidine kinase response regulator; 96.33
3zxq_A124 Hypoxia sensor histidine kinase response regulato; 95.99
4gut_A 776 Lysine-specific histone demethylase 1B; histone de 93.62
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 93.0
3o70_A68 PHD finger protein 13; PHF13, structural genomics 92.41
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 91.49
1we9_A64 PHD finger family protein; structural genomics, PH 90.59
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 89.76
1wee_A72 PHD finger family protein; structural genomics, PH 89.73
3ke6_A399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 88.14
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
Probab=99.85  E-value=3.3e-22  Score=203.99  Aligned_cols=169  Identities=22%  Similarity=0.300  Sum_probs=127.8

Q ss_pred             eeecCh-HHHHHhhccccCCHHHHHHHHHhcccccCCC----------------ccEEEEEeceeccCCCCcCEEEEEeC
Q 005635          168 FVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSIIDD  230 (686)
Q Consensus       168 ~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA~At----------------~I~I~i~~~~~~~~~~~~~~L~I~DN  230 (686)
                      .++..- ..|..++.+.|+....+|+|||+||.||.++                .+.|.|..      ..+...|+|.||
T Consensus        20 ~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~L~I~Dn   93 (239)
T 3nmq_A           20 AFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIP------NPQERTLTLVDT   93 (239)
T ss_dssp             ECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEEEC
T ss_pred             eehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------eCCccEEEEEeC
Confidence            344443 5677778888899999999999999999642                35666653      134679999999


Q ss_pred             CCCCCHHHHHHhh-hcccCCC--------CCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCee
Q 005635          231 GHGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN  301 (686)
Q Consensus       231 G~GMt~~eL~~~l-~fG~s~k--------~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~  301 (686)
                      |.||++++|.+.+ .++.|.+        ...+...||+||+||++++| +|++|+|.|++.+.  .++.|.+  .+...
T Consensus        94 GiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~-vadkv~V~Sk~~~~--~~~~W~s--~~~g~  168 (239)
T 3nmq_A           94 GIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVVVITKHNDD--EQYAWES--SAGGS  168 (239)
T ss_dssp             SCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CSTTE
T ss_pred             CCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccc-cCCEEEEEEeeCCC--ceeEEEE--CCCCc
Confidence            9999999997765 3443321        12357899999999999876 99999999999764  4677776  34446


Q ss_pred             EEEeccc--cCCCCcEEEEEecCcc-hhhhhhhhhh-hcccCCCchhhHH
Q 005635          302 LEIPIVS--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG  347 (686)
Q Consensus       302 i~VP~~~--~~~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~  347 (686)
                      +.|...+  ...+||.|+|+++++. +++.++.++. |.+||.|..+||.
T Consensus       169 fti~~~~~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~  218 (239)
T 3nmq_A          169 FTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPIT  218 (239)
T ss_dssp             EEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEE
T ss_pred             EEEEecCCCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceE
Confidence            6664332  2358999999999765 7888888876 8999999998775
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Back     alignment and structure
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 686
d1h7sa2203 d.122.1.2 (A:29-231) DNA mismatch repair protein P 6e-07
d1b63a2218 d.122.1.2 (A:-2-216) DNA mismatch repair protein M 7e-05
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA mismatch repair protein PMS2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 6e-07
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 190 AIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQ 249
           A+ ELV+NS DA AT +++ ++       G D  ++ + D+G G+  ++   +T   H  
Sbjct: 10  AVKELVENSLDAGATNIDLKLK-----DYGVD--LIEVSDNGCGVEEENFEGLTLKHHTS 62

Query: 250 PDADDPNRIGRFGVGFKTGAM 270
              +  +       GF+  A+
Sbjct: 63  KIQEFADLTQVETFGFRGEAL 83
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query686
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 99.87
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 99.87
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 99.85
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 99.45
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 99.42
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 99.11
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 99.08
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.08
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 98.67
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 98.66
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 97.93
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 97.68
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 97.63
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 97.53
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 97.52
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 97.52
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 97.3
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 96.73
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 96.5
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 96.43
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 87.5
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 85.16
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.6e-23  Score=204.43  Aligned_cols=165  Identities=24%  Similarity=0.310  Sum_probs=126.0

Q ss_pred             HHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005635          174 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ  237 (686)
Q Consensus       174 ~~L~~lgt~~~~~~~~AIaELIdNS~DA~A----------------t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~  237 (686)
                      ..|+.+..+.|+.+..+|+|||+||.||..                ....|.|..      ..+..+|+|.|||.||+.+
T Consensus        12 ~ll~ll~~slYs~~~iflRELIqNa~DA~~k~~~~~~~~~~~~~~~~~~~i~i~~------d~~~~~l~I~DnGiGMt~~   85 (208)
T d1uyla_          12 QLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLTIVDTGIGMTKA   85 (208)
T ss_dssp             HHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEEECSCCCCHH
T ss_pred             HHHHHHHHhhcCCchHhHHHHHhhHHHHHHHHHHHhcCCchhccCCcccceEEee------cCCccEEEEEcCCccccHH
Confidence            566777888889999999999999999931                334455542      2357899999999999999


Q ss_pred             HHHHhhh-cccCCC--------CCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEEeccc
Q 005635          238 DVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS  308 (686)
Q Consensus       238 eL~~~l~-fG~s~k--------~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~~  308 (686)
                      ++.+.++ +|.|.+        ...+...||||||||+|+|| +++++.|.||+.+.....++|..  .+...+..+...
T Consensus        86 el~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGVGFyS~Fm-Vad~v~V~sk~~~~~~~~~~~~~--~~~~~~~~~~~~  162 (208)
T d1uyla_          86 DLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDDEQYAWESSA--GGSFTVRTDTGE  162 (208)
T ss_dssp             HHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTSCCEEEEECS--TTEEEEEECCSS
T ss_pred             HHHhhcccccccchHHHHHhhhhccchhhhhhcccceEEeee-ccCceEEEEecCCcchheeeecc--CCCceEEecccc
Confidence            9998774 555432        12356799999999999999 99999999998877654554432  334445554444


Q ss_pred             cCCCCcEEEEEecCcc-hhhhhhhhhh-hcccCCCchhhHH
Q 005635          309 YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG  347 (686)
Q Consensus       309 ~~~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~  347 (686)
                      ...+||.|+|+++++. ++..++.++. |.+||.|..+||.
T Consensus       163 ~~~~GT~I~L~lk~d~~efl~~~~i~~likkys~fi~~PI~  203 (208)
T d1uyla_         163 PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT  203 (208)
T ss_dssp             CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEE
T ss_pred             cCCCCcEEEEEeCCChHHHcCHHHHHHHHHHHhcccCcCeE
Confidence            5568999999998765 6777888875 9999999998774
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure