Citrus Sinensis ID: 005646
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 686 | 2.2.26 [Sep-21-2011] | |||||||
| Q6LA54 | 933 | Uncharacterized WD repeat | yes | no | 0.374 | 0.275 | 0.320 | 1e-40 | |
| Q9XSC3 | 912 | WD repeat-containing prot | yes | no | 0.440 | 0.331 | 0.319 | 2e-39 | |
| Q498F0 | 912 | WD repeat-containing prot | N/A | no | 0.432 | 0.325 | 0.311 | 8e-39 | |
| O60136 | 586 | Uncharacterized WD repeat | no | no | 0.370 | 0.433 | 0.301 | 5e-38 | |
| Q6NVE8 | 915 | WD repeat-containing prot | yes | no | 0.325 | 0.243 | 0.342 | 2e-35 | |
| Q5JSH3 | 913 | WD repeat-containing prot | yes | no | 0.325 | 0.244 | 0.342 | 2e-35 | |
| Q9R037 | 908 | WD repeat-containing prot | yes | no | 0.325 | 0.245 | 0.342 | 4e-35 | |
| Q03177 | 834 | WD repeat-containing prot | yes | no | 0.406 | 0.334 | 0.298 | 2e-32 | |
| P32330 | 852 | 2-deoxy-glucose resistant | no | no | 0.427 | 0.343 | 0.281 | 1e-20 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.465 | 0.209 | 0.250 | 8e-16 |
| >sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H5.08c PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 157/315 (49%), Gaps = 58/315 (18%)
Query: 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELK-P 310
+I MKFS DG+YLA G D ++R+W V++ E V +C N LK P
Sbjct: 318 AIWAMKFSRDGRYLAVGGQDRILRIWAVLDSEHARSV----ASETCSSDPNNPKLNLKAP 373
Query: 311 LFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLS 370
+F E P+ E+ GH+ +ILDLSWS+NN+LLS
Sbjct: 374 VFS------------------------------EAPIREYAGHTADILDLSWSRNNFLLS 403
Query: 371 ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430
+S+DKT RLW CL F HS++VT + F+P DD +F+SGS+D K+R+W++ V
Sbjct: 404 SSMDKTARLWHPVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAVS 463
Query: 431 DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490
W ++ +++TAV + PDG I G+ +G C FY+ I K A ++T
Sbjct: 464 FWNELPELITAVAFSPDGGLAIAGTFVGLCLFYDTRGLRFRTQMSIRSSRGKNAKGSKVT 523
Query: 491 GFQFLPQ------DSSKVMVSCADSQVRI--LQGPNVIGKYK---------------DGK 527
G Q Q ++++V+ DS++RI L+ ++ K+K DG
Sbjct: 524 GIQTRTQMIDNIAGDTEMLVTTNDSRIRIYNLRDKSLELKFKGHANAQSQNRAYFDDDGN 583
Query: 528 HIVSAGEDSNVYMWN 542
+++ ED V++W+
Sbjct: 584 YVICGSEDHQVFIWD 598
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q9XSC3|WDR44_BOVIN WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/363 (31%), Positives = 185/363 (50%), Gaps = 61/363 (16%)
Query: 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQV------VEDERLTEVDIPEIDPSCIYFTV 302
H G++ TMKFS G+ LASAG D VVR+W + + R+ + PS
Sbjct: 509 HMGAVWTMKFSHCGRLLASAGQDNVVRIWALKNAFDYFNNMRMKYNTEGRVSPSP----- 563
Query: 303 NHLSELKPLFMDKEKISILKSLRRTSESACVVFPP--KVFRILEKPLHEFHGHSGEILDL 360
+E ++ KS T + P K ++P ++ GH+ ++LDL
Sbjct: 564 -----------SQESLNSSKSDTDTGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDL 612
Query: 361 SWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVR 420
SWSKN +LLS+S+DKTVRLW + CL F H ++VT + F+P DD YF+SGS+DGK+R
Sbjct: 613 SWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLR 672
Query: 421 IWAVLSCHVVDWVDI---RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477
+W + V W ++ +++TA + +G+ ++G+ G C FY+ HL+ +I
Sbjct: 673 LWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDT--EHLKYHTQIH 730
Query: 478 VHSK--KKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYK--------- 524
V S + ++ITG + LP + +K++V+ DS++R+ L+ ++ KYK
Sbjct: 731 VRSTRGRNKVGRKITGIEPLPGE-NKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQI 789
Query: 525 ------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKC 578
D ++VS ED VY+W+ HD +K S+ R + W G+K
Sbjct: 790 KASFSHDFNYLVSGSEDKYVYIWSTY------HDLSK-FTSVRRDRNDF-----WEGIKA 837
Query: 579 GNA 581
NA
Sbjct: 838 HNA 840
|
Downstream effector for RAB11. May be involved in vesicle recycling. Bos taurus (taxid: 9913) |
| >sp|Q498F0|WDR44_XENLA WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 115/369 (31%), Positives = 186/369 (50%), Gaps = 72/369 (19%)
Query: 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSEL 308
H G++ TMKFS G+ LASAG D VVR+W + ++ + +
Sbjct: 512 HVGAVWTMKFSHCGRLLASAGQDNVVRIW-------------------VLKNAFDYFNNM 552
Query: 309 KPLFMDKEKIS------ILKSLRRTSESACVVFPPKV--------FRILEKPLHEFHGHS 354
+ + + ++S L S + ++ V FR + P ++ GH+
Sbjct: 553 RIKYNTEGRVSPSPSQESLNSSKSDTDGGVFSGTDDVDPDDKNAPFR--QVPFCKYKGHT 610
Query: 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS 414
++LDLSWSKN +LLS+S+DKTVRLW + CL F H ++VT + F+P DD YF+SGS
Sbjct: 611 ADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGS 670
Query: 415 IDGKVRIWAVLSCHVVDWVDI---RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471
+DGK+R+W + V W +I +++TA + +G+ ++G+ G C FY+ HL+
Sbjct: 671 LDGKLRLWNIPDKKVALWNEIDGQTKLITAANFCQNGKHAVIGTYDGRCIFYDT--EHLK 728
Query: 472 LDAEICVHSK--KKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYK--- 524
+I V S + ++ITG + LP + +K++V+ DS++R+ L+ ++ KYK
Sbjct: 729 YHTQIHVRSTRGRNRVGRKITGIEPLPGE-NKILVTSNDSRIRLYDLRDLSLSMKYKGCV 787
Query: 525 ------------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIP 572
D +IVS ED VY+W+ HD +K S+ R +
Sbjct: 788 NSSSQIKASFSHDFTYIVSGSEDKYVYIWSTY------HDLSK-FTSVRRDRNDF----- 835
Query: 573 WCGLKCGNA 581
W G+K NA
Sbjct: 836 WEGIKAHNA 844
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Downstream effector for rab11. May be involved in vesicle recycling. Xenopus laevis (taxid: 8355) |
| >sp|O60136|YNS5_SCHPO Uncharacterized WD repeat-containing protein C18H10.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC18H10.05 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 158/315 (50%), Gaps = 61/315 (19%)
Query: 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSC-IYFTVNHLSELKP 310
S+ + S G+YLA+AG D ++R+W+V+E E + E SC +FT + + E +P
Sbjct: 188 SVWASEISKSGKYLATAGKDAIIRVWKVIETPERRETLLKEGPQSCGRFFTPSSIFEPEP 247
Query: 311 LFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLS 370
+ CV GH+ E+L +SWSKN++LL+
Sbjct: 248 VL------------------ECV------------------GHNAEVLSISWSKNDFLLT 271
Query: 371 ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430
+S D+TVRLW + L VF H+ VTCV F+P+DD YF+SGS+D K+++W++L ++
Sbjct: 272 SSADRTVRLWHPKSTKSLAVFRHNEIVTCVAFHPIDDRYFVSGSLDCKIQLWSILRHKIL 331
Query: 431 DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490
W ++ +V+ +C+ PDG+ +VG G C Y + N + + + HS + R+T
Sbjct: 332 HWTELEYVVSTICFYPDGESIVVGMFYGLCAIYE-TKNLQYVSSWLIHHSPSRNKKCRVT 390
Query: 491 GFQ---FLPQDSSK---VMVSCADSQVRILQ------------GPNVIGKY-----KDGK 527
G Q +P DS V+VS D+ +R+ V G+ +D
Sbjct: 391 GLQCASIIPNDSKSDNVVLVSTNDNAIRLYNTVTHALVLKLSDAHRVNGRVLSRLSEDNS 450
Query: 528 HIVSAGEDSNVYMWN 542
+I+S + + V +W+
Sbjct: 451 YIISGSDTNEVVLWH 465
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q6NVE8|WDR44_MOUSE WD repeat-containing protein 44 OS=Mus musculus GN=Wdr44 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 146/260 (56%), Gaps = 37/260 (14%)
Query: 344 EKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403
++P ++ GH+ ++LDLSWSKN +LLS+S+DKTVRLW + CL F H ++VT + F+
Sbjct: 599 QRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFH 658
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI---RQIVTAVCYRPDGQGGIVGSMMGDC 460
P DD YF+SGS+DGK+R+W + V W ++ +++TA + +G+ ++G+ G C
Sbjct: 659 PRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRC 718
Query: 461 RFYNVSDNHLELDAEICVHSK--KKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQG 516
FY+ HL+ +I V S + ++ITG + LP + +K++V+ DS++R+ L+
Sbjct: 719 IFYDT--EHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGE-NKILVTSNDSRIRLYDLRD 775
Query: 517 PNVIGKYK---------------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLE 561
++ KYK D ++VS ED VY+W+ HD +K S+
Sbjct: 776 LSLSMKYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIWSTY------HDLSK-FTSVR 828
Query: 562 RFTTNASIAIPWCGLKCGNA 581
R + W G+K NA
Sbjct: 829 RDRNDF-----WEGIKAHNA 843
|
Downstream effector for RAB11. May be involved in vesicle recycling. Mus musculus (taxid: 10090) |
| >sp|Q5JSH3|WDR44_HUMAN WD repeat-containing protein 44 OS=Homo sapiens GN=WDR44 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 146/260 (56%), Gaps = 37/260 (14%)
Query: 344 EKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403
++P ++ GH+ ++LDLSWSKN +LLS+S+DKTVRLW + CL F H ++VT + F+
Sbjct: 597 QRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFH 656
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI---RQIVTAVCYRPDGQGGIVGSMMGDC 460
P DD YF+SGS+DGK+R+W + V W ++ +++TA + +G+ ++G+ G C
Sbjct: 657 PRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRC 716
Query: 461 RFYNVSDNHLELDAEICVHSK--KKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQG 516
FY+ HL+ +I V S + ++ITG + LP + +K++V+ DS++R+ L+
Sbjct: 717 IFYDT--EHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGE-NKILVTSNDSRIRLYDLRD 773
Query: 517 PNVIGKYK---------------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLE 561
++ KYK D ++VS ED VY+W+ HD +K S+
Sbjct: 774 LSLSMKYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIWSTY------HDLSK-FTSVR 826
Query: 562 RFTTNASIAIPWCGLKCGNA 581
R + W G+K NA
Sbjct: 827 RDRNDF-----WEGIKAHNA 841
|
Downstream effector for RAB11. May be involved in vesicle recycling. Homo sapiens (taxid: 9606) |
| >sp|Q9R037|WDR44_RAT WD repeat-containing protein 44 OS=Rattus norvegicus GN=Wdr44 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 146/260 (56%), Gaps = 37/260 (14%)
Query: 344 EKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403
++P ++ GH+ ++LDLSWSKN +LLS+S+DKTVRLW + CL F H ++VT + F+
Sbjct: 592 QRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFH 651
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI---RQIVTAVCYRPDGQGGIVGSMMGDC 460
P DD YF+SGS+DGK+R+W + V W ++ +++TA + +G+ ++G+ G C
Sbjct: 652 PRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRC 711
Query: 461 RFYNVSDNHLELDAEICVHSK--KKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQG 516
FY+ HL+ +I V S + ++ITG + LP + +K++V+ DS++R+ L+
Sbjct: 712 IFYDTE--HLKYHTQIHVRSTRGRNKVGRKITGIEPLPGE-NKILVTSNDSRIRLYDLRD 768
Query: 517 PNVIGKYK---------------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLE 561
++ KYK D ++VS ED VY+W+ HD +K S+
Sbjct: 769 LSLSMKYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIWSTY------HDLSK-FTSVR 821
Query: 562 RFTTNASIAIPWCGLKCGNA 581
R + W G+K NA
Sbjct: 822 RDRNDF-----WEGIKAHNA 836
|
Downstream effector for RAB11. May be involved in vesicle recycling. Rattus norvegicus (taxid: 10116) |
| >sp|Q03177|YMZ2_YEAST WD repeat-containing protein YMR102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR102C PE=1 SV=1 | Back alignment and function description |
|---|
Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 170/335 (50%), Gaps = 56/335 (16%)
Query: 225 VKVYHCKKRSKELSALYKGQEIQAHDGSILT---------------MKFSPDGQYLASAG 269
+K+ +K K+ L+ QE+ A++G +T KFS DG+++A+
Sbjct: 133 IKMLKRRKNLKQFRRLFLAQELMAYEGETVTSTSKSSEPTSKAIWSTKFSRDGKFMATGS 192
Query: 270 DDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS- 328
DG +R+W+V+ + V+ E+D S N + K + + K+++S L + +
Sbjct: 193 KDGKIRIWKVIG----SPVERAELDSSA---ESNKEARAKSMRI-KQQVSSLNNPKEKQF 244
Query: 329 -----------ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTV 377
E ++ P VF PL + H ++LD++WSKNN++LSAS+DKTV
Sbjct: 245 LDSATEKYEEKEKLLNLYAP-VFH--PTPLRLYKEHVQDVLDINWSKNNFILSASMDKTV 301
Query: 378 RLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ 437
+LW + L+ F H ++VTCV F+P DD +FISG +D K R+W++L V D +
Sbjct: 302 KLWHPDRKNSLKTFIHPDFVTCVEFHPTDDRFFISGCLDHKCRLWSILDDEVSFEYDCQD 361
Query: 438 IVTAVCYRP-DGQGGIVGSMMGDCRF-----------YNVSDNHL-ELDAEICVHS--KK 482
++T+V P +G+ I+G+ G ++V+D E +A + V K
Sbjct: 362 LITSVTLSPEEGKYTIIGTFNGYVHILMTRGLTPVSSFHVADRQTQEQNAHVMVTETDSK 421
Query: 483 KAPCKRITGFQ-FLPQ--DSSKVMVSCADSQVRIL 514
R+TG Q F Q +S +++V+ DS++RI
Sbjct: 422 IRHGPRVTGLQAFRSQLDNSFRLVVTSNDSRIRIF 456
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P32330|DGR2_YEAST 2-deoxy-glucose resistant protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DGR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 160/348 (45%), Gaps = 55/348 (15%)
Query: 202 KQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHD----GSILTMK 257
K+ EG L + D MF + Q +K+ K S Y+G+ A+ SI
Sbjct: 132 KKKEG----LEQFDRMFLA--QELKIPDVYK-----STTYQGEPAVANSELFKNSICCCT 180
Query: 258 FSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEK 317
FS DG+Y+ DG + LW+V+ + V E+ S + + + LK + +
Sbjct: 181 FSHDGKYMVIGCKDGSLHLWKVIN----SPVKRSEMGRSEKSVSASRANSLK---IQRHL 233
Query: 318 ISILKSLRRTSESACVVFPPKVFRILEKPLH------------EFHGHSGEILDLSWSKN 365
SI S S S+ + P F K LH F H+ +ILD +WSKN
Sbjct: 234 ASI--SSHNGSISSNDLKPSDQFEGPSKQLHLYAPVFYSDVFRVFMEHALDILDANWSKN 291
Query: 366 NYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425
+L++AS+DKT +LW + L+ F H ++VT F P DD + I+G +D + R+W++L
Sbjct: 292 GFLITASMDKTAKLWHPERKYSLKTFVHPDFVTSAIFFPNDDRFIITGCLDHRCRLWSIL 351
Query: 426 SCHVVDWVDIRQIVTAVCYR-PDGQGGIVGSMMG--------DCRF---YNVSDNHLELD 473
V D + ++T++ P G+ I+G+ G +F ++VSD +
Sbjct: 352 DNEVSYAFDCKDLITSLTLSPPGGEYTIIGTFNGYIYVLLTHGLKFVSSFHVSDKSTQGT 411
Query: 474 AEICVHSK----KKAPCKRITGFQ--FLPQDSS-KVMVSCADSQVRIL 514
+ H K RITG Q F D + +++V+ DS+++I
Sbjct: 412 TKNSFHPSSEYGKVQHGPRITGLQCFFSKVDKNLRLIVTTNDSKIQIF 459
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 86.3 bits (212), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 162/395 (41%), Gaps = 76/395 (19%)
Query: 178 AAGKAERVKKRWFSRLRSLACVVDKQGEGERVR---LNEEDAMFCSKV--QRVKVYHCKK 232
A G ++ + W + S C QG VR + + AM S Q V+++
Sbjct: 1006 ATGSGDQTVRLW--DISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISS 1063
Query: 233 RSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE 292
+ LY +Q H + ++ FSPDG LAS GDD +VRLW +
Sbjct: 1064 GN----CLYT---LQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSG---------- 1106
Query: 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP-LHEFH 351
+C+Y + S ++ L + +L S V +++ I K L+
Sbjct: 1107 ---NCLYTLQGYTSWVRFLVFSPNGV----TLANGSSDQIV----RLWDISSKKCLYTLQ 1155
Query: 352 GHSGEILDLSWSKNNYLL-SASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH+ + +++S + L S S D+TVRLW + + CL + H+++V V FNP D +
Sbjct: 1156 GHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNP-DGST 1214
Query: 410 FISGSIDGKVRIWAVLSCHVV-------DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRF 462
SGS D VR+W + S + WV+ +V + PDG GS R
Sbjct: 1215 LASGSSDQTVRLWEINSSKCLCTFQGHTSWVN------SVVFNPDGSMLASGSSDKTVRL 1268
Query: 463 YNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--------- 513
+++S + C+H+ + + F P D S + D VR+
Sbjct: 1269 WDISSSK-------CLHT-FQGHTNWVNSVAFNP-DGSMLASGSGDQTVRLWEISSSKCL 1319
Query: 514 --LQG----PNVIGKYKDGKHIVSAGEDSNVYMWN 542
QG + + DG + S +D V +W+
Sbjct: 1320 HTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWS 1354
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 686 | ||||||
| 255587633 | 714 | WD-repeat protein, putative [Ricinus com | 0.991 | 0.952 | 0.615 | 0.0 | |
| 224132702 | 726 | predicted protein [Populus trichocarpa] | 0.991 | 0.936 | 0.609 | 0.0 | |
| 225455320 | 731 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.931 | 0.607 | 0.0 | |
| 302143934 | 674 | unnamed protein product [Vitis vinifera] | 0.943 | 0.959 | 0.605 | 0.0 | |
| 224120878 | 654 | predicted protein [Populus trichocarpa] | 0.905 | 0.949 | 0.595 | 0.0 | |
| 356518647 | 701 | PREDICTED: uncharacterized protein LOC10 | 0.982 | 0.961 | 0.585 | 0.0 | |
| 356507576 | 703 | PREDICTED: uncharacterized protein LOC10 | 0.970 | 0.947 | 0.577 | 0.0 | |
| 449456415 | 720 | PREDICTED: WD repeat-containing protein | 0.995 | 0.948 | 0.553 | 0.0 | |
| 357436423 | 784 | WD repeat-containing protein [Medicago t | 0.983 | 0.860 | 0.556 | 0.0 | |
| 225470952 | 753 | PREDICTED: uncharacterized protein LOC10 | 0.997 | 0.908 | 0.519 | 0.0 |
| >gi|255587633|ref|XP_002534336.1| WD-repeat protein, putative [Ricinus communis] gi|223525468|gb|EEF28046.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/717 (61%), Positives = 537/717 (74%), Gaps = 37/717 (5%)
Query: 3 GSSEDEECPFFDASEDIASISGA-----TSDSNDMFDSYYGFNS--EVWVRTPKSVKERR 55
GS +EE FFDA +DIAS+S A TSDS+ D+ + EVW ++P+SV+ERR
Sbjct: 2 GSLSEEEYHFFDAHDDIASVSDAKSDIETSDSHSCADNSIPSSPHFEVWTKSPRSVEERR 61
Query: 56 SKFLDWMEAGLDGLSGNKPVDMGSFGGEDDGLCKSSGAVLRIAGIEEEFRSIRSVRSGRS 115
S+FL+WM+ GLD + +++GS GE D + +SSGAVLR + EEEF S RS S S
Sbjct: 62 SRFLNWMQVGLDQRANGSSIEVGSMEGEIDRIRESSGAVLRKSIFEEEFCSTRSTMSCWS 121
Query: 116 NDNV-----EL-PEENFPCKDGNYDREMACDVDQMGPDGQISNCREIYLENTSELLPLMD 169
N++ EL +ENF C++G Y M + D++ + ++ + NT P
Sbjct: 122 NNDTSNLLEELGSKENFLCREGTYGGGMVFN-DEVNTEHSVTAEESV---NTYGSSPSFQ 177
Query: 170 EIVEKESSAAGK----AERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCSKVQRV 225
+ +++E+ KK+W ++LRS+ACVVDKQ E E++R +++DA+ KVQRV
Sbjct: 178 QFIQRETDEPSNLMDIPRTAKKKWLNKLRSIACVVDKQREAEKLRHDDDDALLQYKVQRV 237
Query: 226 KVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285
KV KR+KELSALYKGQ+IQAH+GSI TMKFSPDGQYLASAG+D VVRLW+V+EDER
Sbjct: 238 KVRQSGKRTKELSALYKGQDIQAHEGSIRTMKFSPDGQYLASAGEDRVVRLWRVLEDERS 297
Query: 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEK 345
E+DIPEIDPSC+YFTV+HLSELKPLF+DKEK + LKSLR+TS+SACVVFPPKVFRILEK
Sbjct: 298 NELDIPEIDPSCVYFTVDHLSELKPLFIDKEKTAKLKSLRKTSDSACVVFPPKVFRILEK 357
Query: 346 PLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPV 405
P+HEFHGH GEILDLSWSK+++LLSAS DKTVRLWRVG+DHCLRVF HSNYVTCV FNPV
Sbjct: 358 PVHEFHGHKGEILDLSWSKDHHLLSASEDKTVRLWRVGSDHCLRVFSHSNYVTCVQFNPV 417
Query: 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465
D+NYF+SGSIDGKVRIWA+ C VVDW DI++IVTAVCY PDGQGGIVGS+ G+CRFYN+
Sbjct: 418 DNNYFMSGSIDGKVRIWAIPCCQVVDWTDIKEIVTAVCYHPDGQGGIVGSIEGNCRFYNM 477
Query: 466 SDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK- 524
SD+HL+LDAEIC+ SKKK+PCK ITGFQF PQDS+K+MV+ ADSQVRILQG NVIGKYK
Sbjct: 478 SDSHLQLDAEICLRSKKKSPCKTITGFQFFPQDSTKLMVTSADSQVRILQGLNVIGKYKG 537
Query: 525 --------------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIA 570
DGKHI+SA EDSNVYMWNCI +E QAK IRS ERF+TNAS+A
Sbjct: 538 LKNASSQMSASFTSDGKHIISASEDSNVYMWNCINQQENVPVQAKKIRSCERFSTNASVA 597
Query: 571 IPWCGLKCGNAEKEPQLHVSDDDSPENLAF-APARFSLGQEYVFESFPKGCATWPEEKLP 629
IPW GL+ GN HVS+ SPE + F +PA F LGQEY ES+PKG ATWPEEKLP
Sbjct: 598 IPWSGLRHGNLRNGWGFHVSNGYSPEVMPFSSPASFFLGQEYFLESYPKGSATWPEEKLP 657
Query: 630 ALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYGLPIPV 686
S S++S ++KS KFL++S T SHAWGLVIVTAGWDGRIRSF NYGLP+ V
Sbjct: 658 VSSPFSASSGMNKSHCKFLEASRQNTAISHAWGLVIVTAGWDGRIRSFHNYGLPVSV 714
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132702|ref|XP_002321388.1| predicted protein [Populus trichocarpa] gi|222868384|gb|EEF05515.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/725 (60%), Positives = 543/725 (74%), Gaps = 45/725 (6%)
Query: 3 GSSEDEECPFFDASEDIASISGATSDSNDMFDSYYGFNS--------EVWVRTPKSVKER 54
GS +EE FFDA ED+ASIS A SDS ++FDS+ F++ E+W+++P SV+ER
Sbjct: 2 GSLSEEEYRFFDAYEDVASISDAKSDSIEIFDSHSSFDNSITRSPPYELWIKSPGSVQER 61
Query: 55 RSKFLDWMEAGLDGLSGNKPVDMGSFGGEDDGLCKSSGAVLRIAGIEEEFRSIRSVRS-- 112
RSKF DWM G+D +G + ++ S GE D + +SSGAVLR + E+EF S RS+ S
Sbjct: 62 RSKFFDWMGVGVD-QNGYRNLEEFSLEGESDRIRESSGAVLRKSCFEDEFCSTRSMMSCW 120
Query: 113 --GRSNDNVELPE-ENFPCKDGNYDREMACDVDQMGPDGQISNCREI---------YLEN 160
G SN EL ENF C+DG M C+VD++G G+ + E+ E
Sbjct: 121 SNGESNLLAELGSVENFVCRDGVSGSGMMCNVDELGQHGKANEGCEVGSEQSVTAEESEK 180
Query: 161 TSELLPLMDEIVEKE----SSAAGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDA 216
TSE P ++V+KE ++ R+KK W SR+RS+ C+VD+ E +++R +++DA
Sbjct: 181 TSESYPSFQQLVQKEVGEPNTLVDTPRRLKKGWLSRIRSITCIVDRPQEADKLRHDDDDA 240
Query: 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276
+ +VQR+KV C KR+KELSALYKGQ+IQAH+GSILTMKFSPDGQYLASAG+DGVVR+
Sbjct: 241 LLRHRVQRIKVRRCGKRTKELSALYKGQDIQAHEGSILTMKFSPDGQYLASAGEDGVVRV 300
Query: 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFP 336
WQV+E ER E+DIPEIDPSC+YFTVN L ELKPLF DKEK + ++S+R+TS+SACV+FP
Sbjct: 301 WQVLEGERSNELDIPEIDPSCMYFTVNQLPELKPLFFDKEKTAKMRSMRKTSDSACVIFP 360
Query: 337 PKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNY 396
PKVFRILEKPLHEFHGHSGE+LDLSWSKNN+LLSAS D TVRLW+VG D CLRVFPHSNY
Sbjct: 361 PKVFRILEKPLHEFHGHSGEVLDLSWSKNNHLLSASEDTTVRLWQVGCDCCLRVFPHSNY 420
Query: 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM 456
VTCV FNPVDDN+F+SGSIDGKVRIWAV S VVDW DI+ +VTAVCYRPDGQGGIVGSM
Sbjct: 421 VTCVQFNPVDDNHFMSGSIDGKVRIWAVNSRQVVDWTDIKDMVTAVCYRPDGQGGIVGSM 480
Query: 457 MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516
G+CRFYN+SD+HL+LDA+IC+ KKK+PCKRITGFQF PQDSSKVMV+CADSQVRILQG
Sbjct: 481 TGNCRFYNMSDSHLQLDAQICLLGKKKSPCKRITGFQFSPQDSSKVMVTCADSQVRILQG 540
Query: 517 PNVIGKYK----------------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSL 560
+VIGKYK DGKHIVS EDS+V++WN + E+P+ ++K RS
Sbjct: 541 LDVIGKYKGMHCNAANQISASFTLDGKHIVSTCEDSSVHLWNYVDQEQPSTPRSKNSRSY 600
Query: 561 ERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAF-APARFSLGQEYVFESFPKG 619
E FT NAS+AIPWCG+K G +E VSD+ S E L +PA FSL QEY ESFPKG
Sbjct: 601 EHFTANASVAIPWCGMKYGGSENGWGFRVSDNSSQEVLPLSSPASFSLSQEYFVESFPKG 660
Query: 620 CATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679
ATWPEEKLP+ +S++ +HKSQYKFLK+SC T +SHAWGLVIVTAGWDGRI+SF N
Sbjct: 661 SATWPEEKLPSSPLSASST-MHKSQYKFLKNSCQSTAASHAWGLVIVTAGWDGRIKSFHN 719
Query: 680 YGLPI 684
YGLP+
Sbjct: 720 YGLPV 724
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225455320|ref|XP_002271917.1| PREDICTED: uncharacterized protein LOC100245187 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/726 (60%), Positives = 536/726 (73%), Gaps = 45/726 (6%)
Query: 5 SEDEECPFFDASEDIASISGATSDS--NDMFDSYYGFNS--------EVWVRTPKSVKER 54
+EDE+ +FDA +D+ + S + S S ND +S GFN+ +VW +P SVKER
Sbjct: 7 NEDEQYQYFDAHDDMDAASLSDSSSDCNDNPNSSSGFNNYASRAFQYDVWAGSPGSVKER 66
Query: 55 RSKFLDWMEAGLDGLSGNKPVDM--GSFGGEDDGLCKSSGAVLRIAGIEEEFRSIRSVRS 112
R+KFL+WM LD S + VD+ S GG D + +SSGAVLR G E+EF S RS S
Sbjct: 67 RNKFLNWMGLSLDRFSCDNSVDVCSDSLGGGVDRVRESSGAVLRTLGFEDEFCSSRSSMS 126
Query: 113 GRSNDNVELP-EENFPCKDGNYDREMACDVDQMGPDGQISNCREIYLEN----------- 160
SN+ E +E F C+ GN D DVD+MG ++S RE+ L+
Sbjct: 127 RWSNEQDESGLQEKFVCRIGNLDVGAEFDVDEMGEGSEVSEFREVGLDRLVTINECQNIS 186
Query: 161 ----TSELLPLMDEIVEKESSAAGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDA 216
+S + ++ +E+ S+ G A+RVKK W SRLRS++C++D+ GE + N+ +
Sbjct: 187 DSLLSSSVQQVIQREIEEASNPVGAAKRVKKGWLSRLRSMSCIMDRHGEIHNLTTNDTNP 246
Query: 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276
+ +++QRV+V C+K+ KELSALYKGQ+IQAH+GSIL+MKFSPDG+YLASAG+DG+VR+
Sbjct: 247 IPGARIQRVRVRQCRKQMKELSALYKGQDIQAHEGSILSMKFSPDGKYLASAGEDGIVRI 306
Query: 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFP 336
WQVVEDER + DIPEIDP CIYFTVNHLSEL PLF +KEK+S L+SLR+TS+SACV+FP
Sbjct: 307 WQVVEDERSNDHDIPEIDPMCIYFTVNHLSELTPLFAEKEKLSKLRSLRKTSDSACVIFP 366
Query: 337 PKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNY 396
PKVFRILEKPLHEFHGHS EILDLSWS NNYLLS+SIDKTVRLWRVG DHCL++F H+NY
Sbjct: 367 PKVFRILEKPLHEFHGHSSEILDLSWSNNNYLLSSSIDKTVRLWRVGCDHCLKIFSHNNY 426
Query: 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM 456
VTCV FNPVDDNYFISGSIDGKVRIWA+ C VVDW DIR++VTAVCYRPDGQGGIVGSM
Sbjct: 427 VTCVQFNPVDDNYFISGSIDGKVRIWAIPGCQVVDWTDIREMVTAVCYRPDGQGGIVGSM 486
Query: 457 MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516
G CRFYNVSDNHL+L++++C+H KKK+ CKRITGFQF PQD S VMV+CADSQVRIL G
Sbjct: 487 TGTCRFYNVSDNHLQLESQMCLHGKKKSLCKRITGFQFSPQDPSTVMVTCADSQVRILHG 546
Query: 517 PNVIGKYK---------------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLE 561
NVIGKYK DGKHIVSA +DSNVY+WNC EPA Q+K+IR+ E
Sbjct: 547 TNVIGKYKGLRNAGNQMSASFTSDGKHIVSACDDSNVYVWNCSNEGEPALSQSKSIRAFE 606
Query: 562 RFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAF-APARFSLGQEYVFESFPKGC 620
F TNAS+AIPWCG+K GN E Q H D+ SP L F +PA FSL QE+ ESFPKG
Sbjct: 607 HFLTNASVAIPWCGMKYGNPENGWQFHALDESSPNTLPFPSPASFSLSQEFFSESFPKGS 666
Query: 621 ATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNY 680
ATWPEEKLP S +S S +HKS++KFLK +C T+SSHAWGLVIVTAGWDGRIRSF NY
Sbjct: 667 ATWPEEKLPTSSLVSVPSKIHKSEHKFLK-ACQSTSSSHAWGLVIVTAGWDGRIRSFHNY 725
Query: 681 GLPIPV 686
GLP P+
Sbjct: 726 GLPAPL 731
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143934|emb|CBI23039.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 836 bits (2159), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/702 (60%), Positives = 519/702 (73%), Gaps = 55/702 (7%)
Query: 5 SEDEECPFFDASEDI--ASISGATSDSNDMFDSYYGFNSEVWVRTPKSVKERRSKFLDWM 62
+EDE+ +FDA +D+ AS+S +T F +VW +P SVKERR+KFL+WM
Sbjct: 8 NEDEQYQYFDAHDDMDAASLSDST------------FQYDVWAGSPGSVKERRNKFLNWM 55
Query: 63 EAGLDGLSGNKPVDM--GSFGGEDDGLCKSSGAVLRIAGIEEEFRSIRSVRSGRSNDNVE 120
LD S + VD+ S GG D + +SSGAVLR G E+EF S RS ++E
Sbjct: 56 GLSLDRFSCDNSVDVCSDSLGGGVDRVRESSGAVLRTLGFEDEFCSSRS--------SIE 107
Query: 121 LPEENFPCKDGNYDREMACDVDQMGPDGQISNCREIYLENTSELLPLMDEIVEKESSAAG 180
+ E RE+ +D++ + N + L +S + ++ +E+ S+ G
Sbjct: 108 VSEF----------REVG--LDRLVTINECQNISDSLL--SSSVQQVIQREIEEASNPVG 153
Query: 181 KAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSAL 240
A+RVKK W SRLRS++C++D+ GE + N+ + + +++QRV+V C+K+ KELSAL
Sbjct: 154 AAKRVKKGWLSRLRSMSCIMDRHGEIHNLTTNDTNPIPGARIQRVRVRQCRKQMKELSAL 213
Query: 241 YKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYF 300
YKGQ+IQAH+GSIL+MKFSPDG+YLASAG+DG+VR+WQVVEDER + DIPEIDP CIYF
Sbjct: 214 YKGQDIQAHEGSILSMKFSPDGKYLASAGEDGIVRIWQVVEDERSNDHDIPEIDPMCIYF 273
Query: 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360
TVNHLSEL PLF +KEK+S L+SLR+TS+SACV+FPPKVFRILEKPLHEFHGHS EILDL
Sbjct: 274 TVNHLSELTPLFAEKEKLSKLRSLRKTSDSACVIFPPKVFRILEKPLHEFHGHSSEILDL 333
Query: 361 SWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVR 420
SWS NNYLLS+SIDKTVRLWRVG DHCL++F H+NYVTCV FNPVDDNYFISGSIDGKVR
Sbjct: 334 SWSNNNYLLSSSIDKTVRLWRVGCDHCLKIFSHNNYVTCVQFNPVDDNYFISGSIDGKVR 393
Query: 421 IWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480
IWA+ C VVDW DIR++VTAVCYRPDGQGGIVGSM G CRFYNVSDNHL+L++++C+H
Sbjct: 394 IWAIPGCQVVDWTDIREMVTAVCYRPDGQGGIVGSMTGTCRFYNVSDNHLQLESQMCLHG 453
Query: 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK---------------D 525
KKK+ CKRITGFQF PQD S VMV+CADSQVRIL G NVIGKYK D
Sbjct: 454 KKKSLCKRITGFQFSPQDPSTVMVTCADSQVRILHGTNVIGKYKGLRNAGNQMSASFTSD 513
Query: 526 GKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEP 585
GKHIVSA +DSNVY+WNC EPA Q+K+IR+ E F TNAS+AIPWCG+K GN E
Sbjct: 514 GKHIVSACDDSNVYVWNCSNEGEPALSQSKSIRAFEHFLTNASVAIPWCGMKYGNPENGW 573
Query: 586 QLHVSDDDSPENLAF-APARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQ 644
Q H D+ SP L F +PA FSL QE+ ESFPKG ATWPEEKLP S +S S +HKS+
Sbjct: 574 QFHALDESSPNTLPFPSPASFSLSQEFFSESFPKGSATWPEEKLPTSSLVSVPSKIHKSE 633
Query: 645 YKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYGLPIPV 686
+KFLK +C T+SSHAWGLVIVTAGWDGRIRSF NYGLP P+
Sbjct: 634 HKFLK-ACQSTSSSHAWGLVIVTAGWDGRIRSFHNYGLPAPL 674
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120878|ref|XP_002318441.1| predicted protein [Populus trichocarpa] gi|222859114|gb|EEE96661.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/712 (59%), Positives = 514/712 (72%), Gaps = 91/712 (12%)
Query: 3 GSSEDEECPFFDASEDIASISGATSDSNDMFDSYYGFNS--------EVWVRTPKSVKER 54
GS +EE FFDA EDIASIS A SDS ++FDS+ F++ E+W+++ SV+E+
Sbjct: 2 GSLSEEEHRFFDAYEDIASISDAKSDSFEIFDSHSSFDNSVSISLHHELWIKSLGSVQEQ 61
Query: 55 RSKFLDWMEAGLDGLSGNKPVDMGSFGGEDDGLCKSSGAVLRIAGIEEEFRSIRSVRSGR 114
RSKF DWM G++ SSGAVLR + E+EF S RS+ S
Sbjct: 62 RSKFFDWM--GIE----------------------SSGAVLRKSCFEDEFCSTRSMMSCW 97
Query: 115 SNDNVELPEE-----NFPCKDGNYDREMACDVDQMGPDGQISNCREIYLENTSELLPLMD 169
SN L E NF C++G+ M C VD++G D P+ +
Sbjct: 98 SNGESSLSAELGLMGNFVCREGDSGGGMVCKVDELGQDK-----------------PMQN 140
Query: 170 EIVEKESSAAGKAERVKKRWFSRLRSLACVVDKQGEGERVR---LNEEDAMFCSKVQRVK 226
E+ E ++ R+KK W SR+RS++C+V E +++R +++DA+ +VQRVK
Sbjct: 141 EVGEP-NTLVDTPRRLKKGWLSRIRSISCIVYSLREADKLRHDDDDDDDALLRYRVQRVK 199
Query: 227 VYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286
V+ KR KELSALYKGQ+IQAH+GSILTMKFSPDGQYLASAG+DGVVR+WQV+E ER
Sbjct: 200 VHRYGKRIKELSALYKGQDIQAHEGSILTMKFSPDGQYLASAGEDGVVRVWQVLESERSN 259
Query: 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346
E+DIPEIDPSCIYFTVN LSELKPL ++KE+ + ++S+R+TS+SACV+FPPKVFRILEKP
Sbjct: 260 ELDIPEIDPSCIYFTVNQLSELKPLLVEKERTAKMRSMRKTSDSACVIFPPKVFRILEKP 319
Query: 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPV 405
LHEFHGH EILDLSWSKNN +LLSAS+DKTV LW+VG D CLRVF HSNYVTCV FNPV
Sbjct: 320 LHEFHGHREEILDLSWSKNNQHLLSASVDKTVCLWQVGRDSCLRVFLHSNYVTCVQFNPV 379
Query: 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465
DDN+F+SGSIDGKVRIWAV SC VVDW DI+ IVTAVCYRPDGQGGIVGS+ G+CRFYN+
Sbjct: 380 DDNHFMSGSIDGKVRIWAVNSCQVVDWTDIKDIVTAVCYRPDGQGGIVGSLTGNCRFYNM 439
Query: 466 SDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK- 524
SD++L+LDA+IC+ KKK+PCKRITGFQF PQDS+KVMVSCADSQVRILQG +VIGKYK
Sbjct: 440 SDSYLQLDAQICLPGKKKSPCKRITGFQFSPQDSTKVMVSCADSQVRILQGLDVIGKYKS 499
Query: 525 ------------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIP 572
DGKHI+SA EDSNV++WN I E+ A Q+K RS E F+ NAS+AIP
Sbjct: 500 NTANQISASFTLDGKHIISACEDSNVHLWNYIDQEQHATPQSKNSRSYEHFSANASVAIP 559
Query: 573 WCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALS 632
WCGLK L +S +PA FSL QEY ESFPKGCATWPEEKL + S
Sbjct: 560 WCGLKF--------LPLS----------SPAHFSLSQEYFSESFPKGCATWPEEKL-SSS 600
Query: 633 QLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYGLPI 684
LS++SA+HKSQYKFLK+SC T SSHAWGLVIVTAGWDGRI+SF NYGLP+
Sbjct: 601 PLSTSSAMHKSQYKFLKTSCQSTDSSHAWGLVIVTAGWDGRIKSFHNYGLPV 652
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518647|ref|XP_003527990.1| PREDICTED: uncharacterized protein LOC100817209 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/711 (58%), Positives = 504/711 (70%), Gaps = 37/711 (5%)
Query: 1 MAGSSEDEECPFFDASEDIA-SISGATSDSNDMFDSYYGFNSEVWVRTPKSVKERRSKFL 59
M SEDEEC FFDA ED+ SI+ SN GF+ E+W+R+P+SV ERR F+
Sbjct: 1 MGSFSEDEECRFFDAQEDVVVSIADDEGVSN-------GFDYEMWIRSPRSVSERRGTFM 53
Query: 60 DWM---EAGLDGLSGNKPVDMGSFGGED---DGLCKSSGAVLRIAGIEEEFRSIRSVRSG 113
M L L VD+ S ++ D + +SGAV R +EEEF S R+ S
Sbjct: 54 KRMGLSSVDLVALENENSVDVCSVECKEEVMDRVNVNSGAVTRNCVMEEEFCSSRTSMSC 113
Query: 114 RSNDNVELP---EENFPCKDGNYDREMACDVDQMGPDGQISNCREIYLENTSELLPLMDE 170
S +N +N PC+DGN D+E +M + + R + E E E
Sbjct: 114 WSRENSSGGFGIVDNSPCQDGNLDQE-GLQCREMSEGRDLDSDRSVVAEEHKESENAFRE 172
Query: 171 IVEKESSAAGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCS-KVQRVKVYH 229
+ + GK + KK W RLRS+ C++++Q EG+ R M + ++Q+VKV
Sbjct: 173 T--DANVSVGKMNKYKKGWLRRLRSITCMLNRQDEGDNGREEGLGEMSGTCRLQKVKVRQ 230
Query: 230 CKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289
KK+ KELSALY Q+ QAH+GSILTMKFSPDGQYLAS G+DGVVRLWQVVE++R EVD
Sbjct: 231 SKKQMKELSALYIRQDFQAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVVEEDRCNEVD 290
Query: 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHE 349
IPEIDPSCIYFTVN+LSEL PLFMDKEKIS LKSL++TS+SAC+VFPPK+FR+LEKPLHE
Sbjct: 291 IPEIDPSCIYFTVNNLSELTPLFMDKEKISKLKSLKKTSDSACIVFPPKIFRLLEKPLHE 350
Query: 350 FHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY 409
F GH GE+LDLSWS NNYLLS+S+DKTVRLW+V +DHCL+VF HSNYVTC+ FNPVDDNY
Sbjct: 351 FRGHRGEVLDLSWSNNNYLLSSSVDKTVRLWQVNHDHCLKVFSHSNYVTCIQFNPVDDNY 410
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469
FISGSIDGKVRIWA+ CHVVDW+DI+ IVTAVCYRPDGQGGI+GS+ G+CRFYNVS+N
Sbjct: 411 FISGSIDGKVRIWAIPDCHVVDWIDIKDIVTAVCYRPDGQGGIIGSLTGNCRFYNVSENL 470
Query: 470 LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK----- 524
L+LD+++C+ KKK P + ITGFQFLPQDS+KVMVSCADSQVRIL G NVIGKYK
Sbjct: 471 LQLDSQLCLIGKKKLPGRGITGFQFLPQDSNKVMVSCADSQVRILDGLNVIGKYKSLSTG 530
Query: 525 ---------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCG 575
DGKHI+SA EDSNVY+WN + EE +AK I S ERF +NAS+A+PW G
Sbjct: 531 SPMCASMTSDGKHILSACEDSNVYLWN-VSQEESNPLKAKKITSCERFFSNASVAVPWHG 589
Query: 576 LKCGNAEKEPQLHVSDDDSPENLAFA-PARFSLGQEYVFESFPKGCATWPEEKLPALSQL 634
LK N E E QL D S + + + PA FSL QE+ ESFPKG ATWPEEKLP S
Sbjct: 590 LKSQNIEIEHQLDALDKTSSQVIQLSPPASFSLSQEFFLESFPKGSATWPEEKLPVSSPK 649
Query: 635 SSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYGLPIP 685
+ AS + KS+YKFLKSSC T+S+HAWG+VIVTAGWDGRI+SF NYGLPIP
Sbjct: 650 AKASVMRKSEYKFLKSSCKSTSSAHAWGMVIVTAGWDGRIKSFHNYGLPIP 700
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507576|ref|XP_003522540.1| PREDICTED: uncharacterized protein LOC100807177 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/719 (57%), Positives = 505/719 (70%), Gaps = 53/719 (7%)
Query: 1 MAGSSEDEECPFFDASEDIASISGATSDSNDMFDSYYGFNSEVWVRTPKSVKERRSKFLD 60
M SEDEEC FFDA ED+ SI + GF+ EVW+R+P+SV+ERR KF+
Sbjct: 1 MGSFSEDEECRFFDAQEDVVSIPDEGVSN--------GFDYEVWIRSPRSVRERRGKFMK 52
Query: 61 WM---EAGLDGLSGNKPVDMGSFGGED---DGLCKSSGAVLRIAGIEEEFRSIRSVRS-- 112
M L L VD+ S E+ D + +SGAV R +EEEF S R+ S
Sbjct: 53 RMGLSSVDLVALENENSVDVRSVECEEEVMDRVNVNSGAVTRNCVMEEEFCSSRTSMSCW 112
Query: 113 GRSNDNVELPE-ENFPCKDGNYDREMACDVDQMGPDGQISNCREIY--LENTSELLPLMD 169
R N + E ++ PC DGN + +VDQ G CRE+ + S+ + +
Sbjct: 113 HRENSSGEFGMVDSSPCHDGN----LEGNVDQEGL-----QCREMSEGRDLDSDRSVVAE 163
Query: 170 EIVEKESS--------AAGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCS- 220
E E E++ GK + +K W RLRS+ C+V++Q EG+ R M +
Sbjct: 164 EFKESENALRGTNGNVTVGKMNKYRKGWLRRLRSITCMVNRQEEGDNGREEGLGEMSGTC 223
Query: 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280
++Q+VKV KK+ KELSALY Q+IQAH+GSILTMKFSPDGQYLAS G+DGVVRLWQVV
Sbjct: 224 RLQKVKVRQSKKQMKELSALYMRQDIQAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVV 283
Query: 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVF 340
E++R EVDIPEID SCIYFTVN+LSEL PLF+DKEKIS LKSL++TS+SAC+VFPPK+F
Sbjct: 284 EEDRCNEVDIPEIDLSCIYFTVNNLSELTPLFIDKEKISKLKSLKKTSDSACIVFPPKIF 343
Query: 341 RILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCV 400
R+LEKPLHEF GH GE+LDLSWS NNYLLS+S+DKTVRLW+V +D CL+VF HSNYVTC+
Sbjct: 344 RLLEKPLHEFRGHRGEVLDLSWSSNNYLLSSSVDKTVRLWQVNHDRCLKVFSHSNYVTCI 403
Query: 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDC 460
FNPVDDNYFISGSIDGKVRIWA+ CHVVDW+DI+ IVTAVCYRPDGQGGI+GS+ G+C
Sbjct: 404 QFNPVDDNYFISGSIDGKVRIWAIPDCHVVDWIDIKDIVTAVCYRPDGQGGIIGSLAGNC 463
Query: 461 RFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI 520
RFYNVS+N L+LD+++C+ KKK + ITGFQFLPQDS+KVMVSCADSQVRIL G NVI
Sbjct: 464 RFYNVSENRLQLDSQLCLIGKKKLSGRGITGFQFLPQDSNKVMVSCADSQVRILDGFNVI 523
Query: 521 GKYK--------------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTN 566
GKYK DGKHI+SA EDSNVY+WN + EE +AK I S ERF +N
Sbjct: 524 GKYKNLSTGSPMCASLTSDGKHILSACEDSNVYLWN-VSQEESNPVKAKKITSCERFFSN 582
Query: 567 ASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFA-PARFSLGQEYVFESFPKGCATWPE 625
ASIA+ W GLK N E + QL D S + + + PA FSL QE+ ESFPKG ATWPE
Sbjct: 583 ASIAVTWHGLKSQNIEIQHQLDALDKRSSQVIQLSPPASFSLSQEFFLESFPKGSATWPE 642
Query: 626 EKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYGLPI 684
EKLP S + S + KS+YKFLKSSC T+S+HAWG+VIVTAGWDGRI+SF NYGLPI
Sbjct: 643 EKLPVSSPKAKTSVMRKSEYKFLKSSCKSTSSAHAWGMVIVTAGWDGRIKSFHNYGLPI 701
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456415|ref|XP_004145945.1| PREDICTED: WD repeat-containing protein 44-like [Cucumis sativus] gi|449528491|ref|XP_004171238.1| PREDICTED: WD repeat-containing protein 44-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/723 (55%), Positives = 495/723 (68%), Gaps = 40/723 (5%)
Query: 1 MAGSSEDEECPFFDASE-DIASISGATSDSNDM-FDSYYGFNS--------EVWVRTPKS 50
M S DEECPFFDA E + SIS D + FDS+ FN+ +VW R+PKS
Sbjct: 1 MGSVSGDEECPFFDAQEINAPSISEPNCDGIEAAFDSHPRFNNWVDGSLVYDVWNRSPKS 60
Query: 51 VKERRSKFLDWMEAGLDGLS----GNKPVDMGSFGGEDDGLCKSSGAVLRIAGIEEEFRS 106
V ERR KFL WM GLD GN + +G E D + + + E+ F S
Sbjct: 61 VHERRRKFLTWMGMGLDRTPPPCHGNS-LSLGCDWREGDVGRLRDNSGVESSDFEDVFCS 119
Query: 107 IRSVRSGRSNDNVELPE----ENFPCKDGNYDREMACDVDQMGPDGQ--ISNCREIYLEN 160
RS S S D++EL E +D E + P + ++ E +
Sbjct: 120 GRSSISCWSTDDIELAEMASTNTVLYRDDVIKGECGRKNGDLKPSVRFAMAEELEETSSS 179
Query: 161 TSELLPLMDEIVEKESSAAGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCS 220
+ +M E+ + + A RV KRW +LRS AC+ DK G+ R+ + ++D+ S
Sbjct: 180 SPSFQQMMQMEAERVNIPSRSARRVNKRWLKKLRSAACIFDKHGKSTRLVV-DDDSAAGS 238
Query: 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280
+V+RVKV HCKK KELSA+Y GQ+I+AH+G+ILTMKFSP+GQYLA+ GDDG+V+LWQV+
Sbjct: 239 RVRRVKVRHCKKHLKELSAMYMGQDIKAHEGAILTMKFSPNGQYLATGGDDGIVKLWQVI 298
Query: 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVF 340
EDER E DIPEIDPSCIYFTVN LSELKPL ++KEK++ +LR+TSESAC++FPPK+F
Sbjct: 299 EDERSNESDIPEIDPSCIYFTVNRLSELKPLLVEKEKLANSMTLRKTSESACIIFPPKIF 358
Query: 341 RILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCV 400
RIL++PLHEFHGHSG+ILDLSWSKNNYLLS+SIDKTVRLWR+G+D CLRVF HSNYVTCV
Sbjct: 359 RILDRPLHEFHGHSGDILDLSWSKNNYLLSSSIDKTVRLWRLGSDDCLRVFSHSNYVTCV 418
Query: 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDC 460
HFNP+D+NYFISGSIDGK+RIW + SC VVDW+DIR+IVTAV Y PDG+GGIVGS+ G C
Sbjct: 419 HFNPMDENYFISGSIDGKIRIWGIPSCQVVDWIDIREIVTAVSYHPDGRGGIVGSINGTC 478
Query: 461 RFYNV-SDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519
RF+ V DN+LELD EIC+ SKKK+P K+ITGFQ+ +DSS++MVS ADS++RI+QG NV
Sbjct: 479 RFFKVIGDNNLELDGEICLSSKKKSPSKKITGFQYSAEDSSRIMVSSADSRIRIIQGLNV 538
Query: 520 IGKYK---------------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFT 564
I KYK DGKHI+SA DSNVY+WNC E K I+S E F+
Sbjct: 539 IQKYKGPCNTGNQTSASFTSDGKHIISASGDSNVYVWNCSYKNEAVLSPVKKIKSYEYFS 598
Query: 565 TNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAF-APARFSLGQEYVFESFPKGCATW 623
+NASIA+PW GL+C E +S E +PA FSL QE + ESFPKG ATW
Sbjct: 599 SNASIAVPWYGLRCNTEAGERHFPGMQRNSSETFPLPSPAFFSLSQE-LLESFPKGSATW 657
Query: 624 PEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYGLP 683
PEEKLP S L S +HKS+YKFLK SC T+SSHAWGLVIVTAGWDGRIRSF NYGLP
Sbjct: 658 PEEKLPTSSLLPKPSMMHKSRYKFLKLSCQNTSSSHAWGLVIVTAGWDGRIRSFHNYGLP 717
Query: 684 IPV 686
+P+
Sbjct: 718 VPI 720
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357436423|ref|XP_003588487.1| WD repeat-containing protein [Medicago truncatula] gi|358344639|ref|XP_003636395.1| WD repeat-containing protein [Medicago truncatula] gi|355477535|gb|AES58738.1| WD repeat-containing protein [Medicago truncatula] gi|355502330|gb|AES83533.1| WD repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/714 (55%), Positives = 493/714 (69%), Gaps = 39/714 (5%)
Query: 1 MAGSSEDEECPFFDASEDIASISGATSDS-NDMFDS--------YYGFNSEVWVRTPKSV 51
MA SE EE FFDA +DI SIS A + N DS F E W R+P SV
Sbjct: 1 MARFSE-EEFQFFDAQDDIVSISDANGVADNHEVDSGPPLGDGLLRDFGYEWWTRSPGSV 59
Query: 52 KERRSKFLDWMEAGLDGLSGNKPVDMGSFGGEDD-GLCKSSGA-VLRIAGIEEEFRSIR- 108
+ERRSKF+ WME LD + VD S+ ED+ K G+ V + G E+F S R
Sbjct: 60 RERRSKFIKWMELSLDQKNLENSVDGSSYEREDEINRMKDGGSSVTKSNGFMEDFFSSRL 119
Query: 109 --SVRSGRSNDNVELPEENFPCKDGNYDREMACDVDQMGPDGQISNCREIYLENTSELLP 166
S S ++ EN C+D N E+ +DQ+ + N E+ +++
Sbjct: 120 SMSCLSSMNSSEFGALVENSACQDRNDGGEVG--LDQLVVSDESVNAAEV---SSTSYQH 174
Query: 167 LMDEIVEKESSAAGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCS--KVQR 224
E E+ +RVKK W +LRS+ C++D Q +GE ED + S ++QR
Sbjct: 175 EFGEEFEETGVFEPWTKRVKKSWLRKLRSMTCMMDVQ-QGESDNRKHEDGVSFSDCRIQR 233
Query: 225 VKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284
VKV CKK+ KELSALY GQ+IQAH+G I TMKFSPDGQYLASAG+DG+VRLWQVVEDER
Sbjct: 234 VKVRQCKKQRKELSALYMGQDIQAHEGPIFTMKFSPDGQYLASAGEDGIVRLWQVVEDER 293
Query: 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILE 344
E+DIPE+D SCIYFTVN LSEL PLFMDK+KI+ +K+L++TS+SAC++FPPKVFR++E
Sbjct: 294 HNEIDIPEVDTSCIYFTVNDLSELTPLFMDKDKITNVKTLKKTSDSACIIFPPKVFRLME 353
Query: 345 KPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNP 404
KPLHEFHGH GEILDLSWSKNNYLLS+S+DKTVRLW+VG+D CL+VF HSNYVTC+ FNP
Sbjct: 354 KPLHEFHGHGGEILDLSWSKNNYLLSSSVDKTVRLWQVGHDCCLKVFSHSNYVTCIQFNP 413
Query: 405 VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN 464
VDD+YFISGSIDGKVRIW + CHVVDW D+++IVTAVCYRPDGQ GI+GSM G+CRFYN
Sbjct: 414 VDDDYFISGSIDGKVRIWGIPDCHVVDWTDVKEIVTAVCYRPDGQVGIIGSMTGNCRFYN 473
Query: 465 VSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK 524
VSDN L + +++C+ KKK+ + ITGFQFLPQD +KVMV+C DSQVRI++G NV+ K+K
Sbjct: 474 VSDNQLRMQSQLCLLGKKKSSGRGITGFQFLPQDFNKVMVTCDDSQVRIIEGLNVVEKFK 533
Query: 525 --------------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIA 570
DGKHI+SA EDSNVY+WN + E +AK I+S ERF +NAS+A
Sbjct: 534 GLNAGSLMSASFTSDGKHILSACEDSNVYLWN-VSDNESRSTKAKKIKSCERFFSNASVA 592
Query: 571 IPWCGLKCGNAEKEPQLHVSDDDSPENLAF-APARFSLGQEYVFESFPKGCATWPEEKLP 629
+PW GLK N E +L V + P+ + P+ FSL Q++ S PKG AT+PEEKLP
Sbjct: 593 VPWGGLKSDNIENSKKLDVLNKRPPQAVCLDPPSSFSLSQDFYLNSIPKGSATYPEEKLP 652
Query: 630 ALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYGLP 683
S S S+LHKS YKFLKSSC T++ HAWGLVIVTAGWDGRI+SF NYGLP
Sbjct: 653 TSSPKSKKSSLHKSAYKFLKSSCKSTSNCHAWGLVIVTAGWDGRIKSFHNYGLP 706
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470952|ref|XP_002264456.1| PREDICTED: uncharacterized protein LOC100241604 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/751 (51%), Positives = 486/751 (64%), Gaps = 67/751 (8%)
Query: 1 MAGSSEDEECPFFDASEDIASISGATSDSNDMFDSYY--------GFNSEVWVRTPKSVK 52
M GS +EE FFD EDI S+S + SD + DS + F EVW++ P+S++
Sbjct: 1 MMGSLSEEEDQFFDTREDITSVSDSGSDCQENLDSEWRNTDFVSGSFGCEVWIKNPESIR 60
Query: 53 ERRSKFLDWMEAGLDGLSGNKPVDM--GSFGGEDDGLCKSSGAVLRIAGIEEEFRSIRSV 110
ERR+KFL WM G+D + P ++ G GE D + ++SGAVL ++ ++ F S +S
Sbjct: 61 ERRTKFLKWMGLGVDHVVREVPEELVSGELKGEIDRITENSGAVLGMSSSDDGFSSSQSS 120
Query: 111 RSGRSNDNVELP---EENFPCKDGNYDREMACDVDQMGPDGQISNCREI---------YL 158
S+ L EEN C+ + D VD++G G +S RE+
Sbjct: 121 MCWPSDAQDFLGGSLEENLFCRIRSLDDGREFIVDELGQYGMLSRLREVGSNRVVTIEEF 180
Query: 159 ENTSELLPLMDEIVEKESSAAGK----AERVKKRWFSRLRSLACVVDKQGEGERVRLNEE 214
E T L PL+ +++ KE+ A A+R ++ W+ RL ++AC+ + E + + N
Sbjct: 181 ERTLGLSPLVQKMMRKEAEKACNPVEAAKRCRRGWWRRLGAVACIANCPIEVGKFKPNGP 240
Query: 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVV 274
+ +K Q VKV ++RSKELSALY GQ+ AH+GSILTMKFSPDGQYL SAG+D VV
Sbjct: 241 YPILGTKSQTVKVRPYRRRSKELSALYMGQDFVAHEGSILTMKFSPDGQYLGSAGEDRVV 300
Query: 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVV 334
R+W V E ER D P++D S YFTVNHLSEL P+ DKEK LK+LR++ ++ACV+
Sbjct: 301 RVWLVTESERSDGFDAPDVDCSYAYFTVNHLSELVPIHADKEKKGKLKTLRKSLDAACVI 360
Query: 335 FPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHS 394
FP KVF+ILEKPLHEFHGH GE+LD+SWSKN YLLS+S+DKTVRLW+VG + CL+VF H+
Sbjct: 361 FPQKVFQILEKPLHEFHGHCGEVLDISWSKNKYLLSSSVDKTVRLWQVGCNQCLKVFSHN 420
Query: 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG 454
NYVTCV FNPVDDNYFISGSIDGKVRIW + VVDW DI +IVTAVCYRPDG+G IVG
Sbjct: 421 NYVTCVQFNPVDDNYFISGSIDGKVRIWEIPGGQVVDWTDITEIVTAVCYRPDGKGVIVG 480
Query: 455 SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514
SM G+CRFY+ SD+ L+L A IC+ KKK+ KRITGFQF P D SK+MV+ ADSQVRIL
Sbjct: 481 SMTGNCRFYDASDDRLQLHALICLQGKKKSSFKRITGFQFSPSDPSKLMVTSADSQVRIL 540
Query: 515 QGPNVIGKYK---------------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRS 559
G +VI KY+ DG HIVSA EDSNVY+WNCI + P H QAK S
Sbjct: 541 DGVDVICKYRGLRNAGSQISASFTSDGMHIVSASEDSNVYVWNCISQDVPVHSQAKNNWS 600
Query: 560 LER-FTTNASIAIPWCGLKCGN--------AEKEPQLHVSDDDS-PEN------------ 597
ER F+ NAS+AIPWCG CGN A P+L V+ S PEN
Sbjct: 601 CERFFSNNASVAIPWCGATCGNSIFSNISGAFPSPKLSVNLPRSDPENKPHQCHLGESSS 660
Query: 598 --LAF-APARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLC 654
L F +P FS+G + ES PKG ATWPEEKL S L +SA+ KSQYKFLK+SC
Sbjct: 661 TILPFSSPDHFSVGHGFFSESLPKGSATWPEEKLLTPSSLVVSSAMCKSQYKFLKTSCQS 720
Query: 655 TTSS-HAWGLVIVTAGWDGRIRSFLNYGLPI 684
S HAWGLVIVTAGWDGRIRSF NYGLPI
Sbjct: 721 MFGSPHAWGLVIVTAGWDGRIRSFQNYGLPI 751
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 686 | ||||||
| TAIR|locus:2169769 | 698 | AT5G24320 "AT5G24320" [Arabido | 0.946 | 0.929 | 0.484 | 8.4e-161 | |
| TAIR|locus:2168606 | 654 | AT5G53500 "AT5G53500" [Arabido | 0.883 | 0.926 | 0.494 | 6.5e-154 | |
| TAIR|locus:2165700 | 709 | AT5G42010 "AT5G42010" [Arabido | 0.702 | 0.679 | 0.507 | 1.2e-122 | |
| TAIR|locus:2019494 | 647 | AT1G64610 "AT1G64610" [Arabido | 0.502 | 0.533 | 0.546 | 1.5e-120 | |
| TAIR|locus:2153443 | 825 | AT5G54200 "AT5G54200" [Arabido | 0.488 | 0.406 | 0.477 | 2.7e-99 | |
| TAIR|locus:2181733 | 905 | AT5G02430 "AT5G02430" [Arabido | 0.472 | 0.358 | 0.450 | 9.5e-98 | |
| TAIR|locus:2090146 | 883 | AT3G15470 "AT3G15470" [Arabido | 0.491 | 0.381 | 0.461 | 3.8e-96 | |
| TAIR|locus:2040731 | 903 | AT2G37670 "AT2G37670" [Arabido | 0.599 | 0.455 | 0.408 | 2.9e-86 | |
| TAIR|locus:2028539 | 593 | AT1G48870 [Arabidopsis thalian | 0.489 | 0.566 | 0.391 | 3.3e-65 | |
| UNIPROTKB|Q9XSC3 | 912 | WDR44 "WD repeat-containing pr | 0.590 | 0.444 | 0.292 | 1.9e-36 |
| TAIR|locus:2169769 AT5G24320 "AT5G24320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1566 (556.3 bits), Expect = 8.4e-161, P = 8.4e-161
Identities = 351/724 (48%), Positives = 456/724 (62%)
Query: 6 EDEECPFFDASEDIASISGATSDSNDMFDSYYG-FNSEVWVRTPKSVKERRSKFLDWMEA 64
E+EE FFDA E+IAS S + S G F +VW+++P + +ERR KFL WM
Sbjct: 7 EEEESRFFDAHEEIASCSSPCKIESP--SSISGEFRYDVWIKSPGNTEERREKFLKWMGL 64
Query: 65 GL---DGLSGN-----KPVD----MGSFGGEDDGLCKSS-GAVLRIAGIEEEFRSIRSVR 111
+ SGN V+ + S +DD S + ++
Sbjct: 65 SSTVNESKSGNVYRLSSSVNESAVLMSLKSDDDEFSSSRCDSFSPSESVDRVVNESLCKE 124
Query: 112 SGRSNDNVELPEENFPCKDGNYDREMACDVDQMGPDGQISNCREIYLENTSELLPLMDEI 171
G + + L F DG+ + C + +I +E +LLP D +
Sbjct: 125 EGEVDSGMVLRNLGF-VDDGDISSSL-CSLSSSPVSDKI--VKE---HGEPKLLP--DPM 175
Query: 172 V-EKESSAAGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCSKVQRVKVYHC 230
V E+E +G +RVK++W SRL V +K+ G E A+ S+++RVKV
Sbjct: 176 VAEEEREVSGIMKRVKEKWLSRLYK---VRNKRSAGGDDN-GGEVAVCGSRIERVKVKEY 231
Query: 231 KKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290
KK +KELSAL+KGQEIQAH+G+IL MKFSPDG+YLASAG+DGV+R+W VVEDER E D+
Sbjct: 232 KKEAKELSALFKGQEIQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVVEDERCEEHDV 291
Query: 291 PEIDPSCIYFTVNHLSELKPLFMDKEKIS-ILKSLRRTSESACVVFPPKVFRILEKPLHE 349
P+IDPSCIYF V+ LSEL+P+ ++K+ I+ L S R+T+ESACV+ PPK+FR+L+KPLHE
Sbjct: 292 PKIDPSCIYFEVSKLSELRPVAVEKDGITGSLMSPRKTTESACVIIPPKIFRVLDKPLHE 351
Query: 350 FHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY 409
F GHSG+ILD+SWSKNN LLSAS+D +VRLW++G + CL +F H+NYVT V FNPVDD++
Sbjct: 352 FLGHSGDILDISWSKNNRLLSASVDNSVRLWQIGCEDCLGIFSHNNYVTSVQFNPVDDDH 411
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469
FISGSIDGKVRIW+ C VVDW D R IVTAVCY+PDGQ I+G++ DCRFYNVS +
Sbjct: 412 FISGSIDGKVRIWSASQCQVVDWADARGIVTAVCYQPDGQAVIIGTLTSDCRFYNVSGHC 471
Query: 470 LELDAEICVHSKKKAPCKRITGFQFLPQ----DSSKVMVSCADSQVRILQGPNVIGKYK- 524
L+LD IC+H+KKK+ KRI GFQFL Q D S+VMV+ ADSQVRI+ G NV+ KYK
Sbjct: 472 LQLDGHICLHNKKKSSNKRIIGFQFLLQFDSTDPSRVMVASADSQVRIISGRNVVHKYKG 531
Query: 525 --------------DGKHIVSAGEDSNVYMWNCIGHE----EP---AHDQAKTIRSLERF 563
DGKHIVSA +DS+VY+WNC+GH+ P +H + IRS E+F
Sbjct: 532 SRNAGNQISASFTADGKHIVSACDDSSVYVWNCVGHDPEQSSPGFFSHTKRLKIRSFEKF 591
Query: 564 TTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATW 623
+ + S+AIPWCG P L + +P+ FSLG+EYV +S PKG ATW
Sbjct: 592 SADVSVAIPWCGFT-------PVLSGGSE-------LSPSLFSLGREYVLDS-PKGSATW 636
Query: 624 PEEKXXXXXXXXXXXXXHKSQYKFLKSSCLCTT-SSHAWGLVIVTAGWDGRIRSFLNYGL 682
PEEK +S YKFL+SSC T+ SSH WGLVIVT GWDGRI+ F NYGL
Sbjct: 637 PEEKLASSFSPVKAI--RRSHYKFLRSSCRRTSESSHLWGLVIVTGGWDGRIKLFHNYGL 694
Query: 683 PIPV 686
P+PV
Sbjct: 695 PVPV 698
|
|
| TAIR|locus:2168606 AT5G53500 "AT5G53500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1501 (533.4 bits), Expect = 6.5e-154, P = 6.5e-154
Identities = 330/668 (49%), Positives = 428/668 (64%)
Query: 38 GFNSEVWVRTPKSVKERRSKFLDWMEAGLDGLSGNKPVDMGSFGGEDDGLCKSSGAVLRI 97
GF +VW +P SV ERR KFL+WM +G K S G C G +
Sbjct: 26 GFGFDVWNDSPGSVVERRRKFLEWMGVEEEGRVETKD----SVSGSSVESCFDGGEENSV 81
Query: 98 AGIEEEFR-SIRSVRSGRSNDNVELPEENFPCKDGNYDREMACDVDQMGPDGQISNCREI 156
E S S S +VE+ EE D N CDV + +++C
Sbjct: 82 EAEERSGECSSSSSEVSLSGSSVEVSEELSLRVDRNVG---GCDVTRR-QSSSMASC--- 134
Query: 157 YLENTSELLPLMDEIVEKESSAAGKAERVKKRWFSRLRSLACVVDKQGE-GERVRLNEED 215
++S + + EK+ + AG KK W SRLRS+ C D E G R+R +
Sbjct: 135 ---SSSRYCQVKE--TEKQRNIAGLVTSFKKGWLSRLRSMGCTADTNIESGGRMRASSG- 188
Query: 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVR 275
+ + RVKV HCKK++KELSALY+ Q+I+AHDG+IL MKFS DG++LAS+G+DG+VR
Sbjct: 189 --YGDVISRVKVKHCKKQAKELSALYQSQDIKAHDGAILAMKFSNDGKFLASSGEDGIVR 246
Query: 276 LWQVVEDE--RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKIS-ILKSLRRTSESAC 332
+W+VVED+ RL + EIDPSC+YF VN LS+LKP+ +++EK +S R+TS+SAC
Sbjct: 247 VWKVVEDKKSRLRRDCLNEIDPSCMYFEVNDLSQLKPVLVNEEKPKKTTESFRKTSDSAC 306
Query: 333 VVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP 392
VVFPPKVFRI+EKPL+EF GH+GE+LD+SWSK+NYLLSAS+DKTVRLW+VG++ CL VF
Sbjct: 307 VVFPPKVFRIMEKPLYEFRGHTGEVLDISWSKDNYLLSASMDKTVRLWKVGSNDCLGVFA 366
Query: 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI 452
H++YVT V FNPV++NYF+SGSIDGKVRIW + C VVDW D++ I++AVCYRPDGQGGI
Sbjct: 367 HNSYVTSVQFNPVNENYFMSGSIDGKVRIWNISGCSVVDWADLKDIISAVCYRPDGQGGI 426
Query: 453 VGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512
+GS+ G CRF+N+S LELD++I +H+KKK+ KRITGFQFLPQ+ +KV+V ADS+VR
Sbjct: 427 IGSLNGSCRFFNMSGEFLELDSQIHLHNKKKSSNKRITGFQFLPQEPTKVLVVSADSKVR 486
Query: 513 ILQGPNVIGKYK---------------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTI 557
ILQG NV+ KYK DGKHIVSA EDSNVY+W+ EE + K I
Sbjct: 487 ILQGNNVVRKYKGVCKTRSLTSASLTSDGKHIVSACEDSNVYIWS--NDEE---SETKKI 541
Query: 558 RSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFA-PARFSLGQEYVFESF 616
RS ERF+ NAS+A WCG SD ++ L F+ P+ S + +V S
Sbjct: 542 RSFERFSANASVAATWCGF-------------SDHNT--TLPFSSPSCLSHNEGFVPGSI 586
Query: 617 PKGCATWPEEKXXXXXXXXXXXXXHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRS 676
KG ATWPEE + S YKFLKSS +SS +WG+VIVT GWDG+IR+
Sbjct: 587 SKGSATWPEENLPANPLSTSAM--NASHYKFLKSSYQRASSSLSWGMVIVTGGWDGQIRT 644
Query: 677 FLNYGLPI 684
F NYGLP+
Sbjct: 645 FQNYGLPV 652
|
|
| TAIR|locus:2165700 AT5G42010 "AT5G42010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1206 (429.6 bits), Expect = 1.2e-122, P = 1.2e-122
Identities = 269/530 (50%), Positives = 334/530 (63%)
Query: 187 KRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEI 246
K W +L L V+DK E + E + Q +V KK+ KELS+L GQE
Sbjct: 198 KGWLKKLGVLTHVLDKTEECT----DGESTRSSIRRQLTRVQSFKKQFKELSSLCVGQEF 253
Query: 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL-TEVDIPEIDPSCIYFTVNHL 305
AHDGSI+ MKFS DG+YLASAG+D VVR+W ++EDER E ++ E D SC+YF +N
Sbjct: 254 SAHDGSIVVMKFSHDGKYLASAGEDCVVRVWNIIEDERRDNEFEVAESDSSCVYFGMNDK 313
Query: 306 SELKPLFMDKEKISILKSL-RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364
S+++PL + EKI + L R+ SES C V P KVF I E P HEF GH+GEILDLSWS+
Sbjct: 314 SQIEPLKTENEKIEKSRGLLRKKSESTCAVLPSKVFSISETPQHEFRGHTGEILDLSWSE 373
Query: 365 NNYLLSASIDKTVRLWRVGN-DHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+LLS+S+D+TVRLWRVG+ D C+RVF H ++VTCV FNPVDDNYFISGSIDGKVRIW
Sbjct: 374 KGFLLSSSVDETVRLWRVGSSDECIRVFSHKSFVTCVAFNPVDDNYFISGSIDGKVRIWD 433
Query: 424 VLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483
V VVD+ DIRQIVTA+CYRPDG+G +VGSM G+CRFY+ +DN L+LD +I +H KKK
Sbjct: 434 VSQFRVVDYTDIRQIVTALCYRPDGKGAVVGSMTGECRFYHTTDNQLQLDRDISLHGKKK 493
Query: 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK------------------- 524
P KRITGFQF P DS KVMV+ ADSQ+RI+ G + I K K
Sbjct: 494 VPNKRITGFQFFPGDSDKVMVTSADSQIRIICGVDTICKLKKASSLRTTLMSPTFASFTS 553
Query: 525 DGKHIVSAGEDSNVYMWNCIGHEEPAHDQA-KTIRSLERFTT-NASIAIPWCGLKCGNAE 582
DGKHIVS E+S +++W+ + A Q KTIRS E F + N S+AIPW G G
Sbjct: 554 DGKHIVSTIEESGIHVWDFSQPNKKASSQKPKTIRSYEGFLSRNVSVAIPWLGQ--G--- 608
Query: 583 KEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEK----XXXXXXXXXXX 638
KE + ++D + +FA F + +Y F KG TWPEEK
Sbjct: 609 KEDSI-IADLEK----SFA--HFPVPLDY-FSPM-KGATTWPEEKLGVVAGTAAAAVSAT 659
Query: 639 XXHKSQYKFLKSSCLCTTSS--HAWGLVIVTAGWDGRIRSFLNYGLPIPV 686
+S+ + LKS C S H WGLVIVTA WDG IR F NYGLPI V
Sbjct: 660 VSSRSKLRLLKSVCQNVHGSTPHLWGLVIVTATWDGSIRVFHNYGLPIRV 709
|
|
| TAIR|locus:2019494 AT1G64610 "AT1G64610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1010 (360.6 bits), Expect = 1.5e-120, Sum P(3) = 1.5e-120
Identities = 204/373 (54%), Positives = 261/373 (69%)
Query: 187 KRWFSRLRSLACVVDKQG-EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQE 245
K W +L L V++ E R +L++ V RV+ + KK+ KELS++ QE
Sbjct: 164 KSWLKKLGVLTHVLESMDCESVRTQLHQ--------VARVQTH--KKQFKELSSMCIDQE 213
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
AHDGSIL MKFSPDG+Y+ASAG+D VVR+W + E+ER ++ E+D S +YF +N
Sbjct: 214 FSAHDGSILAMKFSPDGKYIASAGEDCVVRVWSITEEERTDTYEVAEVD-SGVYFGMNQR 272
Query: 306 SELKPLFMDKEKISILKS-LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364
S+++PL ++ EK S LR++S+S CVV PP +F I EKPLHEF GH GEILDLSWS+
Sbjct: 273 SQIEPLKINNEKTEKKSSFLRKSSDSTCVVLPPTIFSISEKPLHEFKGHIGEILDLSWSE 332
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424
YLLS+S+D+TVRLWRVG D CLR F H+N+VTCV FNPVDDNYFISGSIDGKVRIW V
Sbjct: 333 KGYLLSSSVDETVRLWRVGCDECLRTFTHNNFVTCVAFNPVDDNYFISGSIDGKVRIWDV 392
Query: 425 LSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484
C VVD+ DIR IVTAVCYRPD +G ++GSM G+CRFY++ +N L++D EI VH KKK
Sbjct: 393 TRCRVVDYTDIRDIVTAVCYRPDAKGAVIGSMTGNCRFYHIFENQLQMDQEINVHGKKKV 452
Query: 485 PCKRITGFQFLPQDSS--KVMVSCADSQVRILQGPNVIGKYK-------------DGKHI 529
KRI+G Q+LP DS KVMV+ ADSQ+RI+ G +VI K K DGKHI
Sbjct: 453 ASKRISGLQYLPSDSDSDKVMVTSADSQIRIICGEDVICKLKASSLRTTSASFISDGKHI 512
Query: 530 VSAGEDSNVYMWN 542
+S EDS + +W+
Sbjct: 513 ISTSEDSYINVWS 525
|
|
| TAIR|locus:2153443 AT5G54200 "AT5G54200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 791 (283.5 bits), Expect = 2.7e-99, Sum P(3) = 2.7e-99
Identities = 171/358 (47%), Positives = 233/358 (65%)
Query: 206 GERVRLNEEDA--MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ 263
G+R +D+ M +RVKV K KEL+AL+K QEIQAH GSI ++KFS DG+
Sbjct: 317 GQRFSSATDDSRDMSFHDPERVKVRQYGKSCKELTALFKSQEIQAHKGSIWSIKFSLDGR 376
Query: 264 YLASAGDDGVVRLWQVVEDER---LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320
YLASAG+D V+++W+VVE ER L +D E D S F + + S +P+ M ++
Sbjct: 377 YLASAGEDCVIQIWKVVESERKGELLSMDKQE-DGSINLFLLANGSP-EPVSMSPKRRGR 434
Query: 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLW 380
R++ V+ P VF + EKP+ F GH ++LDLSWSK+ +LLS+S+DKTVRLW
Sbjct: 435 TSFSRKSVSLDNVLVPEAVFGLSEKPVCSFVGHLDDVLDLSWSKSQHLLSSSMDKTVRLW 494
Query: 381 RVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT 440
+ + CL+VF HS+YVTC+ FNPVDDNYFISGS+D KVRIW++ VVDW D+ ++VT
Sbjct: 495 DLSSKTCLKVFSHSDYVTCIQFNPVDDNYFISGSLDAKVRIWSIPDHQVVDWNDLHEMVT 554
Query: 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS-KKKAPCKRITGFQFLPQDS 499
A CY PDGQG +VGS G C YN DN L+ EI + + KKK K+ITGFQF+ S
Sbjct: 555 AACYTPDGQGALVGSYKGTCCLYNTHDNKLQQRREINLKNRKKKTHHKKITGFQFVAGSS 614
Query: 500 SKVMVSCADSQVRILQGPNVIGKYK---------------DGKHIVSAGEDSNVYMWN 542
S+V+V+ ADS+ R++ G +++ K+K +GK +VSA EDSNVY+WN
Sbjct: 615 SEVLVTSADSRTRVVDGVDLVHKFKGFRNTNSQISASLTSNGKFLVSASEDSNVYVWN 672
|
|
| TAIR|locus:2181733 AT5G02430 "AT5G02430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 746 (267.7 bits), Expect = 9.5e-98, Sum P(4) = 9.5e-98
Identities = 156/346 (45%), Positives = 217/346 (62%)
Query: 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282
Q VKV H K K+LSAL+ QEIQAH G I TMKFSPD LASAG+D + +W+V E
Sbjct: 384 QWVKVRHSGKSHKDLSALHMCQEIQAHQGGIWTMKFSPDSHLLASAGEDCAIHVWEVQEC 443
Query: 283 E--RLTEVDIPEIDPSCIYFT-VNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPK- 338
E + E + I PS T + + + DK+K ++ ++ V P+
Sbjct: 444 EIMSMNEGSLTPIHPSMSGSTDKSSEGDAAEVSQDKKKKGKTSMSKKGNQIPDYVHAPET 503
Query: 339 VFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVT 398
VF + +KP+ F GH ++LDLSWS++ LLS+S+DKTVRLW + CL++F H++YVT
Sbjct: 504 VFSLSDKPICSFTGHLDDVLDLSWSRSQLLLSSSMDKTVRLWDIETQSCLKLFAHNDYVT 563
Query: 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG 458
CV FNP+D++YFISGS+D K+RIW + + VV+W D++++VTAVCY PDGQ VGS+ G
Sbjct: 564 CVQFNPLDEDYFISGSLDAKIRIWNISNRQVVEWNDLKEMVTAVCYTPDGQAAFVGSING 623
Query: 459 DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518
CR Y+ D LE +I + +KKKA K+IT FQF P + S+V+V+ ADS++R+L G
Sbjct: 624 HCRLYSAEDCKLEQTNQIDLQNKKKAQAKKITAFQFSPINPSEVLVTSADSRIRVLDGTE 683
Query: 519 VIGKYK---------------DGKHIVSAGEDSNVYMWNCIGHEEP 549
++ K++ D KHIV A EDS VY+W HEEP
Sbjct: 684 LVQKFRGFKNMNSQMTASYTVDAKHIVCASEDSQVYVWK---HEEP 726
|
|
| TAIR|locus:2090146 AT3G15470 "AT3G15470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 807 (289.1 bits), Expect = 3.8e-96, Sum P(3) = 3.8e-96
Identities = 167/362 (46%), Positives = 237/362 (65%)
Query: 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282
+RV+V K SKEL+ALYK QEIQAH+GSI ++KFS DG+YLASAG+D ++ +WQVVE
Sbjct: 386 ERVRVRQYGKSSKELTALYKTQEIQAHNGSIWSIKFSLDGKYLASAGEDCIIHIWQVVEA 445
Query: 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVF-PPKVFR 341
E+ E+ + P + N E P M + S+ R S S +F P +F
Sbjct: 446 EKKGELLLDR--PELLLLATNGSPE--PTTMSPRRRG-RTSISRKSLSLENIFVPDSLFG 500
Query: 342 ILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVH 401
+ EKP F GH ++LDL+WSK+ +LLS+S+DKTVRLW + + CL+VF HS+YVTC+
Sbjct: 501 LSEKPFCSFQGHVDDVLDLAWSKSQHLLSSSMDKTVRLWNLSSQTCLKVFSHSDYVTCIQ 560
Query: 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCR 461
FNPVDD YFISGS+D KVR+W++ VVDW D+ ++VT+ CY PDGQG +VGS G CR
Sbjct: 561 FNPVDDRYFISGSLDAKVRVWSIPDRQVVDWYDLHEMVTSACYTPDGQGVLVGSYKGSCR 620
Query: 462 FYNVSDNHLELDAEICVHSKKK-APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI 520
Y+ SDN L+ ++I + +KKK A K+ITGFQF+P SS+V+V+ +DS++R++ G +++
Sbjct: 621 MYSASDNKLQQKSQINLQNKKKKAHQKKITGFQFVPGSSSEVLVTSSDSRIRVVDGTDLV 680
Query: 521 GKYK---------------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTT 565
K K DGK++VSA EDS+VY+W +E PA +++ + T
Sbjct: 681 NKLKGFRNTSSQISASITADGKYVVSASEDSHVYIWK---YESPASRPSRSNNNKNVTVT 737
Query: 566 NA 567
N+
Sbjct: 738 NS 739
|
|
| TAIR|locus:2040731 AT2G37670 "AT2G37670" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 737 (264.5 bits), Expect = 2.9e-86, Sum P(3) = 2.9e-86
Identities = 186/455 (40%), Positives = 258/455 (56%)
Query: 166 PLMDEIVEKESSAAGKAERVKKRWFSRL--------RSLAC-VVDKQ-GEGERVRLNE-E 214
PLMD + K +S K+ R+ KR + L S++ V DK +G + +
Sbjct: 311 PLMD--LRKFNSYLSKSVRLSKRRGAALLKNIKGVAHSMSLRVADKDVSDGSTDSPKKGK 368
Query: 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVV 274
D + VKV K KELSAL+ QEIQAH+G++ T+KFS D YLAS G D V+
Sbjct: 369 DHKHGKANEWVKVRPTGKSYKELSALHMCQEIQAHEGAVWTIKFSQDAHYLASGGADRVI 428
Query: 275 RLWQVVEDERLT--EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332
+W+V E E ++ E + I PS + N ++ ++K+K S RR +
Sbjct: 429 HVWEVQECELMSMNEGSLTPIHPSLCDSSGNEIT-----VVEKKKKGKGSSGRRHNHIPD 483
Query: 333 VVFPPK-VFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF 391
V P+ VF +KP+ GH ILDLSWSK+ LLS+S+DKTVRLW + CL++F
Sbjct: 484 YVHVPETVFSFSDKPVCSLKGHLDAILDLSWSKSQLLLSSSMDKTVRLWDIETKTCLKLF 543
Query: 392 PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGG 451
H++YVTC+ F+PVD+NYF+SGS+D K+RIW++ HVV+W D+ ++VTA CY PDGQG
Sbjct: 544 AHNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQDRHVVEWSDLHEMVTAACYTPDGQGA 603
Query: 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR-ITGFQFLPQDSSKVMVSCADSQ 510
++GS G CR Y+ D L +I V S KK+ KR IT FQF P + S+V+V+ ADS+
Sbjct: 604 LIGSHKGICRAYDTEDCKLSQTNQIDVQSNKKSQAKRKITSFQFSPVNPSEVLVTSADSR 663
Query: 511 VRILQGPNVIGKYK---------------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAK 555
+RIL G VI K+K DGK+I+ A EDS VY+W H +
Sbjct: 664 IRILDGSEVIHKFKGFRNTCSQLSASYSQDGKYIICASEDSQVYLWKNDFHRTRS---TL 720
Query: 556 TIRSLERF-TTNASIAIPWCGLKCGNAEKEP-QLH 588
T +S E F + S A+PW G G E P Q+H
Sbjct: 721 TTQSHEHFHCKDVSAAVPWHGHVRG--EPPPVQIH 753
|
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| TAIR|locus:2028539 AT1G48870 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 152/388 (39%), Positives = 201/388 (51%)
Query: 319 SILKSLRRTSE-----SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASI 373
S+L S R E +A V+FP K F I E P E +GH+G++LDL+WS +N LLSAS
Sbjct: 232 SLLASFLRQQEPINQQAALVLFPQKAFHIEETPFQELYGHTGDVLDLAWSDSNLLLSASK 291
Query: 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV 433
DKTVRLWR G D CL VF H+NYVTCV FNPV+ N F SGSIDGK RIW + VV W
Sbjct: 292 DKTVRLWRTGCDQCLHVFHHNNYVTCVEFNPVNKNNFASGSIDGKARIWGLSEERVVAWT 351
Query: 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493
D+R ++A+ Y+P+G G +VG + G+CRFY + DN + +D +I + + RIT +
Sbjct: 352 DVRDSISAISYQPNGNGFVVGCITGNCRFYQILDNDVIMDEQILIRGRN-----RITAVE 406
Query: 494 FLPQDSSKVMVSCADSQVRILQGPNVIGKYK----------------DGKHIVSAGEDSN 537
F P S K++VS DS+VRI +I K+K GKHI+S
Sbjct: 407 FCPGSSEKILVSSEDSKVRIFDKTQMIHKFKAPSNFGRQSSASFVSSTGKHILSVRRGVG 466
Query: 538 VYMWNCIGHEEPAHDQAKTIRSLERF-TTNASIAIPWCGLKCGNAEKEPQLH-VSDDDSP 595
VY+WN P+ AK+ RS E F + S W + E ++ V+ DD
Sbjct: 467 VYLWN--NDAFPSRKGAKSSRSFEYFHSPGVSAVAAW-------TQPETKVSKVAGDDEE 517
Query: 596 ENLAFAPARFSLGQEYVFESFPKGCATWPEEKXXXXXXXXXXXXXHKSQYKFLKSSCLCT 655
+ S G+ + ATWPEEK ++
Sbjct: 518 SRRVMRKIQSS-GR---LSRSCRVTATWPEEKLLMNVGSYDSNLP-VGEFDL-------- 564
Query: 656 TSSHAWGLVIVTAGWDGRIRSFLNYGLP 683
+ AW LVIVT DG IR+F NYGLP
Sbjct: 565 --AEAWRLVIVTVSLDGMIRTFHNYGLP 590
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| UNIPROTKB|Q9XSC3 WDR44 "WD repeat-containing protein 44" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 418 (152.2 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
Identities = 128/437 (29%), Positives = 222/437 (50%)
Query: 159 ENTSELLPLMDEIVEKESSAAGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMF 218
+ T++L + + V++ A AE +R ++++S+ V + + ++E +
Sbjct: 422 QKTTQLKKFLGKSVKR---AKHLAEEYGERAVNKVKSVRDEVFHTDQDDPSSSDDEGMPY 478
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQA-HDGSILTMKFSPDGQYLASAGDDGVVRLW 277
V + K H K + + Q++ H G++ TMKFS G+ LASAG D VVR+W
Sbjct: 479 TRPV-KFKAAHGFKGPYDFDQIKVVQDLSGEHMGAVWTMKFSHCGRLLASAGQDNVVRIW 537
Query: 278 QVVED-ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFP 336
+ + + + Y T +S P +E ++ KS T +
Sbjct: 538 ALKNAFDYFNNMRMK-------YNTEGRVSP-SP---SQESLNSSKSDTDTGVCSGTDED 586
Query: 337 P--KVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHS 394
P K ++P ++ GH+ ++LDLSWSKN +LLS+S+DKTVRLW + CL F H
Sbjct: 587 PDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHI 646
Query: 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI---RQIVTAVCYRPDGQGG 451
++VT + F+P DD YF+SGS+DGK+R+W + V W ++ +++TA + +G+
Sbjct: 647 DFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYA 706
Query: 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKK--KAPCKRITGFQFLPQDSSKVMVSCADS 509
++G+ G C FY+ HL+ +I V S + ++ITG + LP ++ K++V+ DS
Sbjct: 707 VIGTYDGRCIFYDTE--HLKYHTQIHVRSTRGRNKVGRKITGIEPLPGEN-KILVTSNDS 763
Query: 510 QVRI--LQGPNVIGKYKDGKHIVSAGEDSNVYMWNCI--GHEEPAHDQAKTIRSLERFTT 565
++R+ L+ ++ KYK + S + S + +N + G E+ T L +FT+
Sbjct: 764 RIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFNYLVSGSEDKYVYIWSTYHDLSKFTS 823
Query: 566 NASIAIP-WCGLKCGNA 581
W G+K NA
Sbjct: 824 VRRDRNDFWEGIKAHNA 840
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00037226001 | SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (732 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 686 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-28 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-10 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 4e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-04 | |
| pfam04762 | 903 | pfam04762, IKI3, IKI3 family | 0.003 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-28
Identities = 62/325 (19%), Positives = 125/325 (38%), Gaps = 64/325 (19%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H G + + FSPDG+ LA+ DG +++W + E +
Sbjct: 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------------LLRTLKG 49
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRI-LEKPLHEFHGHSGEILDLSW 362
H ++ D + L S + +++ + + + GH+ + +++
Sbjct: 50 HTGPVR----DVAASADGTYLASGSSDKTI----RLWDLETGECVRTLTGHTSYVSSVAF 101
Query: 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVR 420
S + L S+S DKT+++W V CL H+++V V F+P D + S S DG ++
Sbjct: 102 SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIK 160
Query: 421 IWAVLSCHVV-------DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473
+W + + V V +V + PDG+ + S G + +++S
Sbjct: 161 LWDLRTGKCVATLTGHTGE------VNSVAFSPDGEKLLSSSSDGTIKLWDLST-----G 209
Query: 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD------------SQVRILQGPN--- 518
+ + + F P ++ S ++ V+ L G
Sbjct: 210 KCLGTLRGHENG---VNSVAFSP--DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSV 264
Query: 519 -VIGKYKDGKHIVSAGEDSNVYMWN 542
+ DGK + S D + +W+
Sbjct: 265 TSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 2e-21
Identities = 58/242 (23%), Positives = 96/242 (39%), Gaps = 51/242 (21%)
Query: 344 EKPLHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVH 401
+ L GH+G + D++ S + YL S S DKT+RLW + C+R H++YV+ V
Sbjct: 41 GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVA 100
Query: 402 FNPVDDNYFISGSIDGKVRIW--------AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV 453
F+P D S S D +++W L H DW V +V + PDG
Sbjct: 101 FSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDW------VNSVAFSPDGTFVAS 152
Query: 454 GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513
S G + +++ + A + H+ + F P D K++ S +D +++
Sbjct: 153 SSQDGTIKLWDLRT--GKCVATLTGHT------GEVNSVAFSP-DGEKLLSSSSDGTIKL 203
Query: 514 --LQGPNVIGKYK-------------DGKHIVSAGEDSNVYMWN---------CIGHEEP 549
L +G + DG + S ED + +W+ GH
Sbjct: 204 WDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNS 263
Query: 550 AH 551
Sbjct: 264 VT 265
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 97.1 bits (240), Expect = 3e-21
Identities = 71/382 (18%), Positives = 141/382 (36%), Gaps = 52/382 (13%)
Query: 241 YKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYF 300
++ H+ SI ++ FSPDG+ L S DG ++LW + E+L +
Sbjct: 56 LSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKS-----------L 104
Query: 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360
H S + L + + + + + ++ K + GHS + L
Sbjct: 105 EGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS---TPGKLIRTLEGHSESVTSL 161
Query: 361 SWSKNNYLL--SASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDG 417
++S + LL +S+D T++LW + L H++ V+ + F+P SGS DG
Sbjct: 162 AFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG 221
Query: 418 KVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476
+R+W + + ++ + + PDG GS G R +++ + L +
Sbjct: 222 TIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLL-RTL 280
Query: 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKDGKH------ 528
HS + F P D + +D VR+ L+ ++ H
Sbjct: 281 SGHS------SSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS 333
Query: 529 ----------IVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKC 578
+ +D + +W+ K +++LE + S++ G
Sbjct: 334 LSFSPDGSLLVSGGSDDGTIRLWDL--------RTGKPLKTLEGHSNVLSVSFSPDGRVV 385
Query: 579 GNAEKEPQLHVSDDDSPENLAF 600
+ + + + D + L
Sbjct: 386 SSGSTDGTVRLWDLSTGSLLRN 407
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.3 bits (212), Expect = 9e-18
Identities = 69/331 (20%), Positives = 124/331 (37%), Gaps = 37/331 (11%)
Query: 225 VKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVEDE 283
VK++ K + ++ H S+ ++ FSPDG+ LAS DG ++LW + +
Sbjct: 136 VKLWDLSTPGKLIR------TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK 189
Query: 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL 343
L+ + S + S L S S+
Sbjct: 190 PLSTLAGHTDPVSSL------------------AFSPDGGLLIASGSSDGTIRLWDLSTG 231
Query: 344 EKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCL--RVFPHSNYVTCVH 401
+ GHS ++ + L S S D T+RLW + + L + HS+ V V
Sbjct: 232 KLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVA 291
Query: 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI---VTAVCYRPDGQGGIVGSMM- 457
F+P D SGS DG VR+W + + ++ + ++ V+++ + PDG + G
Sbjct: 292 FSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD 350
Query: 458 GDCRFYNVSDNH--LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515
G R +++ L+ V S +P R+ +S +
Sbjct: 351 GTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410
Query: 516 GPNVIGKYK---DGKHIVSAGEDSNVYMWNC 543
+ + DGK + S D+ + +W+
Sbjct: 411 HTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 46/233 (19%), Positives = 85/233 (36%), Gaps = 41/233 (17%)
Query: 346 PLHEFHGHSGEILDLSWS-KNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFN 403
GH+G + +++S L + S D T+++W + LR H+ V V +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIV--GSMMGDC 460
D Y SGS D +R+W + + V V++V + PDG+ I+ S
Sbjct: 61 A-DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR--ILSSSSRDKTI 117
Query: 461 RFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPN 518
+ ++V + + F P D + V S D +++ L+
Sbjct: 118 KVWDVETG----KCLTTLRGHTDW----VNSVAFSP-DGTFVASSSQDGTIKLWDLRTGK 168
Query: 519 VIGKYK-------------DGKHIVSAGEDSNVYMWN---------CIGHEEP 549
+ DG+ ++S+ D + +W+ GHE
Sbjct: 169 CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG 221
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.4 bits (163), Expect = 9e-12
Identities = 50/225 (22%), Positives = 86/225 (38%), Gaps = 28/225 (12%)
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278
S ++++ + S L L H S+L++ FSPDG+ LAS DG VRLW
Sbjct: 259 GSSDGTIRLWDLRSSSSLLRTLSG------HSSSVLSVAFSPDGKLLASGSSDGTVRLW- 311
Query: 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPK 338
D+ H + +S +
Sbjct: 312 ----------DLETGKLLSSLTLKGHEGPVS-------SLSFSPDGSLLVSGGSDDGTIR 354
Query: 339 VFRILEKPLHEFHGHSGEILDLSWSKNNYLLS-ASIDKTVRLWRVGNDHCLRVFP-HSNY 396
++ + + +L +S+S + ++S S D TVRLW + LR H++
Sbjct: 355 LWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR 414
Query: 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVVDWVDIRQIVT 440
VT + F+P D SGS D +R+W + + V + +++
Sbjct: 415 VTSLDFSP-DGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLA 458
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 8e-10
Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 31/152 (20%)
Query: 236 ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDP 295
+L + H G + ++ FSPDG+ L S+ DG ++LW D+
Sbjct: 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW-----------DLSTGKC 211
Query: 296 SCIYF----TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL-EKPLHEF 350
VN ++ F + S T +V+ + + +
Sbjct: 212 LGTLRGHENGVNSVA-----FSPDGYLLASGSEDGTI---------RVWDLRTGECVQTL 257
Query: 351 HGHSGEILDLSWSKN-NYLLSASIDKTVRLWR 381
GH+ + L+WS + L S S D T+R+W
Sbjct: 258 SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-08
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277
+ ++ H G + ++ FSPDG+YLAS DDG ++LW
Sbjct: 6 KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-08
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277
+ ++ H G + ++ FSPDG LAS DDG VR+W
Sbjct: 5 RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-07
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 344 EKPLHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLW 380
K L GH+G + +++S + N L S S D TVR+W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-07
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 345 KPLHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLW 380
+ L GH+G + +++S + YL S S D T++LW
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-07
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 386 HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
L+ H+ VT V F+P D Y SGS DG +++W
Sbjct: 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-06
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 387 CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
LR H+ VT V F+P D N SGS DG VR+W
Sbjct: 3 LLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.1 bits (105), Expect = 1e-04
Identities = 40/212 (18%), Positives = 82/212 (38%), Gaps = 32/212 (15%)
Query: 353 HSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFIS 412
+S +L L S++ LL A + + L + + L + H + +T + F+P D +S
Sbjct: 26 NSLSLLSLGSSESGILLLALLSDS--LVSLPDLSSLLLRGHEDSITSIAFSP-DGELLLS 82
Query: 413 GSIDGKVRIWAVLS----CHVVDWVDIRQIVTAVCYRPDGQGGIV--GSMMGDCRFYNVS 466
GS DG +++W + + ++ + + PDG ++ S+ G + +++S
Sbjct: 83 GSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142
Query: 467 DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL------------ 514
+L + HS + +T F P S D +++
Sbjct: 143 TP-GKLIRTLEGHS------ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA 195
Query: 515 ---QGPNVIGKYKDGK-HIVSAGEDSNVYMWN 542
+ + DG I S D + +W+
Sbjct: 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227
|
Length = 466 |
| >gnl|CDD|218251 pfam04762, IKI3, IKI3 family | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDH----CLRVFPHSNYVTCVHFNPVDDNYFI 411
+++ L W+ ++ +L+ S++ V+LW GN H FP S V ++P
Sbjct: 291 KVISLEWNSDSEVLAVSLEDRVQLWTTGNYHWYLKQELRFPESAGVAFFKWDPEKPLTLH 350
Query: 412 SGSIDGKVRIWAVLSCHVVDWV 433
+ G++ +VD+
Sbjct: 351 VLTESGQI--------LIVDFA 364
|
Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation. This region contains WD40 like repeats. Length = 903 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.003
Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 52/229 (22%)
Query: 265 LASAGDDGVVRLWQVVEDERLTE----------VDIPEIDPSCIYFTVNHLSELKPLFMD 314
+AS+ +GVV++W V + +TE +D DP+ + + S L+
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSV--KLWSI 605
Query: 315 KEKISILKSLRRTSESACVVFPPKVFRIL-----------------EKPLHEFHGHSGEI 357
+ +SI +++ + CV FP + R L + PL GHS +
Sbjct: 606 NQGVSI-GTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTV 664
Query: 358 LDLSWSKNNYLLSASIDKTVRLWRVG------NDHCLRVFP-HSNYVTCVHFNPVDDNYF 410
+ + ++ L+S+S D T++LW + N+ L F H+N V + V D Y
Sbjct: 665 SYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLS-VSDGYI 723
Query: 411 ISGSIDGKVRIW------AVLS--CHVVDWV------DIRQIVTAVCYR 445
+GS +V ++ VLS +D V D Q +++VC+R
Sbjct: 724 ATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWR 772
|
Length = 793 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 686 | |||
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.98 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.98 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.98 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.96 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.95 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.95 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.94 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.94 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.93 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.93 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.92 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.92 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.92 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.92 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.91 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.9 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.9 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.9 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.89 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.89 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.89 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.89 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.88 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.88 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.88 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.88 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.88 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.88 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.88 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.87 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.87 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.87 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.87 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.86 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.85 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.85 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.85 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.84 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.83 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.82 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.82 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.81 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.81 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.81 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.8 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.79 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.78 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.78 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.77 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.76 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.75 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.75 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.74 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.74 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.72 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.71 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.71 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.71 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.7 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.7 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.69 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.69 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.69 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.68 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.68 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.67 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.67 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.66 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.66 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.66 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.65 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.64 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.6 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.6 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.6 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.59 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.59 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.57 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.57 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.56 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.56 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.52 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.52 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.51 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.5 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.48 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.48 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.48 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.47 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.47 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.47 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.46 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.46 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.44 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.43 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.4 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.39 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.37 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.37 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.37 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.37 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.36 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.35 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.34 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.31 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.31 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.3 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.3 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.3 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.28 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.25 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.24 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.23 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.23 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.22 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.22 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.22 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.22 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.21 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.21 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.2 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.19 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.19 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.15 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.15 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.13 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.09 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.06 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.02 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.02 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.01 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.0 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.0 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.0 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.99 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.99 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.99 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.97 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.96 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.94 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.89 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.89 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.87 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.84 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.83 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.83 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.83 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.82 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.8 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.78 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.76 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.74 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.74 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.71 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.69 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.68 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.68 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.67 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.63 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.63 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.61 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.58 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.58 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.56 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.55 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.53 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.53 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.48 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.47 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.46 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.46 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.45 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.43 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.41 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.37 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.31 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.3 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.3 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.28 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.25 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.25 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.24 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.19 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.17 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.15 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.14 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.14 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.12 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.1 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.1 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.07 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.99 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.97 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.95 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.9 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.88 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.87 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.85 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.78 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.77 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.75 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.75 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.69 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.67 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.63 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.62 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.6 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.51 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.48 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.46 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.44 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.43 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.42 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.4 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.39 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.36 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.28 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.26 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.24 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.13 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.08 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.05 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.03 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.02 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.02 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.0 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.99 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.95 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.89 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.81 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.8 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.71 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.7 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.68 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.63 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.59 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.5 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.47 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.44 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.39 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.31 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.28 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.2 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.92 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.87 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.82 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.72 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.68 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.68 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.66 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.63 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.59 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.56 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.54 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.29 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.28 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.17 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.16 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.07 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.03 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.87 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.8 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 94.79 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.68 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.67 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.55 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.47 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 94.28 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.23 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 94.21 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.01 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 93.91 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 93.8 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 93.68 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 93.53 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 93.53 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 93.53 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 93.37 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.31 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.14 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 92.73 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 92.67 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 92.61 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.2 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 92.2 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.0 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 91.6 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.53 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 91.14 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.02 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 90.76 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 90.69 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 90.6 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.43 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 90.18 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 90.01 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 89.47 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 89.38 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 89.31 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 89.22 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 88.99 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 88.89 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 87.94 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 87.93 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 86.86 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 86.84 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 86.82 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 85.88 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 84.93 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 84.9 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 84.71 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 84.1 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 83.72 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 83.31 | |
| PRK10115 | 686 | protease 2; Provisional | 83.29 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 83.22 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 83.21 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 82.83 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 82.8 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 81.55 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 81.08 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 80.55 |
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-76 Score=624.53 Aligned_cols=634 Identities=43% Similarity=0.718 Sum_probs=454.1
Q ss_pred CCCcccccccccccccCCCCCCCCCCcCCCCCCccccccccCCCcHHHHHHHHHHhhcCCC-CCCCCCCCCCC-CCCCCc
Q 005646 6 EDEECPFFDASEDIASISGATSDSNDMFDSYYGFNSEVWVRTPKSVKERRSKFLDWMEAGL-DGLSGNKPVDM-GSFGGE 83 (686)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~ 83 (686)
+||||+|||+.|+|++ . |+||+..|+||.|||+|||++|||+. +.+.+..+... .....+
T Consensus 6 ~ee~~~f~~~~~~~~~----------------~--~~~w~~~p~sv~err~~~l~~mgls~~~~~~~~~~~~~~~~~~~~ 67 (712)
T KOG0283|consen 6 EEEEDRFFDASERVSP----------------D--YDLWTSSPGSVSERRRKFLNGMGLSSKKTLSRSETVDRLSSSSVE 67 (712)
T ss_pred ccccccccccccccCc----------------c--hhhhhcCccchhHHHHHHhhhhccccccccccccccccccccccc
Confidence 3555999999999972 1 99999999999999999999999996 34443333211 000000
Q ss_pred cccccccccccccccccccccccccccccccCCCCCCCCCCCCCcccCcCCCcceEEeccCCC-Cc-----ccccCceE-
Q 005646 84 DDGLCKSSGAVLRIAGIEEEFRSIRSVRSGRSNDNVELPEENFPCKDGNYDREMACDVDQMGP-DG-----QISNCREI- 156 (686)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-----~~~~~~~~- 156 (686)
+... .++-.+.++...+ ++..++.++ ..+ ...-..+.. .+.+.+.+|++... ++ +++++..+
T Consensus 68 ~~~~------~~~~~~v~~~~~~-~~~~~~~~s-~~~-~~~~~~~~~--~~~~~e~~v~e~~~~~~~~~~sd~~~~~~~~ 136 (712)
T KOG0283|consen 68 SNVD------ESNHNSVEDTDSE-QCRPSSSSS-KSR-VSQSSSSIE--LDTGDEFSVSENPEDGSVNRLSDVGTGASST 136 (712)
T ss_pred cccc------ccccccccccccc-cCCcccccc-ccc-cccccccee--ecccceeeEeeccCccccccccCCCcccccc
Confidence 0000 0000011111111 111110000 000 000001111 24555555566643 22 45554444
Q ss_pred --EEEEeccccchhHHHHHhhccc-----------------hhhHHHHHHhHHhhcccceeeecccCc--ceeeecCCC-
Q 005646 157 --YLENTSELLPLMDEIVEKESSA-----------------AGKAERVKKRWFSRLRSLACVVDKQGE--GERVRLNEE- 214 (686)
Q Consensus 157 --~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~~- 214 (686)
+++...+..+.++++++++... ..+.++..+.|++.++.+++......+ ...+..+..
T Consensus 137 ~e~~e~~~g~~~~v~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~~~r~~~~~l~~~k~~~~~~s~~~~~~~~~~~~d~~~ 216 (712)
T KOG0283|consen 137 LEELESSPGESSRVKELGDRENADLDEMLTKYNDDVSGSVLLRKSKRYGKRWLKSLKVVAHSLSSLSENRRSRFDSDSSS 216 (712)
T ss_pred cccccCCcCcccchhhhhhhcccccchhhcccccccccccccchhhhhhhhhhhhccccccccccccccccccccccchh
Confidence 6777777888888887754332 122455566688888887776553311 111111110
Q ss_pred ----cc--ceeec--------cceEEEEEcCCccccccccccCceec-ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEe
Q 005646 215 ----DA--MFCSK--------VQRVKVYHCKKRSKELSALYKGQEIQ-AHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (686)
Q Consensus 215 ----~l--~~g~~--------d~~v~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~ 279 (686)
++ ..+.. ..++++-...+..+++..++..|+++ +|++.|++|+||+||+||||||+||.||||.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkV 296 (712)
T KOG0283|consen 217 QFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKV 296 (712)
T ss_pred cccccccccccccccccccCCcceEEecccCCCcccceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEE
Confidence 10 11111 16789999999999999999999999 99999999999999999999999999999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeecc-ccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK-EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
...+. +........++.+..+....+....... .........++.....++.++.+++.+.++|++.|.||.++|+
T Consensus 297 ie~e~---~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DIL 373 (712)
T KOG0283|consen 297 IESER---MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADIL 373 (712)
T ss_pred eccch---hcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCccccccccchhhhhccchhhe
Confidence 88664 3444455566666666555554444444 2223334445556666689999999999999999999999999
Q ss_pred EEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCc
Q 005646 359 DLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (686)
Q Consensus 359 ~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~ 438 (686)
+|+||.+++|+++|+|+|||||++.+..|+++|.|.++||||+|+|.|++||++|+.||+||||++...+++.|.+.+..
T Consensus 374 DlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~l 453 (712)
T KOG0283|consen 374 DLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDL 453 (712)
T ss_pred ecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC--
Q 005646 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG-- 516 (686)
Q Consensus 439 V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~-- 516 (686)
|+++||.|||++.++|+.+|.|++|++...+++...++..+..++....+|++++|.|.+...|+++++|.+|||+|+
T Consensus 454 ITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 454 ITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred heeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence 999999999999999999999999999999999999999988777766699999999988889999999999999999
Q ss_pred Ccce---------------eEcCCCCEEEEEeCCCcEEEEeCCCCCC-CCccccccccccccccC-CcEEEecCCCCcCC
Q 005646 517 PNVI---------------GKYKDGKHIVSAGEDSNVYMWNCIGHEE-PAHDQAKTIRSLERFTT-NASIAIPWCGLKCG 579 (686)
Q Consensus 517 ~~~~---------------~~~~dg~~l~sgs~Dg~V~iWd~~~~~~-~~~~~~~~~~~~~~~~~-~~~v~~s~~g~~~~ 579 (686)
...+ .|..||++|++|++|..||||++..... ......+.++.++.|.+ +.++++.|.|...-
T Consensus 534 ~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~~~~~~~~~~~~~s~e~f~s~~vs~a~~w~g~~~~ 613 (712)
T KOG0283|consen 534 KDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFNSEASHKKTKSIRSYEHFSSVDVSVAIPWPGFHAH 613 (712)
T ss_pred hhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCccccccccccccccccccccccccccccccccccc
Confidence 3333 3555999999999999999999976542 23345667899999999 99999999987553
Q ss_pred CCCCCCcccccCCCCCcccccCCCccccCcccccc-----CCCCCCCCCCCCcCCCccccccccccchhhHHhhhccccc
Q 005646 580 NAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFE-----SFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLC 654 (686)
Q Consensus 580 ~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~-----s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (686)
+...+..-.... +..|. ..+... -.++...+|+++++..... .......++++..+.|+.
T Consensus 614 n~ss~~p~~~~~-------~~~~~-----~~~~~s~~~~~~~~~~s~t~~e~~~~~s~~---~~~~~~~~~~~~~S~~~~ 678 (712)
T KOG0283|consen 614 NPSSNLPPLIKA-------ALRPV-----NEFKLSSPMRSLNSRGSATWPEEKLLDSPG---ASASSRSSIKFLMSGCQR 678 (712)
T ss_pred cccccCCCCccc-------ccCcc-----cccccCCccccccccccccCcccccccccC---cccccccccccccCCCcc
Confidence 321110000000 01111 111111 2336778999988774321 122334444566666664
Q ss_pred Cc--cCCCCceEEEEecCCCeEeEEeecCCCcCC
Q 005646 655 TT--SSHAWGLVIVTAGWDGRIRSFLNYGLPIPV 686 (686)
Q Consensus 655 ~~--~~~~~g~~ivT~~~DG~Ir~w~~~g~p~~~ 686 (686)
.. .+++||++|+||++||.||+|||||||+++
T Consensus 679 ~~~~~~~~wg~vivTs~~~g~Ir~~~n~glp~~~ 712 (712)
T KOG0283|consen 679 SSSSSPHAWGMVIVTSTLDGQIRCFQNYGLPRRV 712 (712)
T ss_pred ccccccCCCcceeeeccccceEEEEEecCCCCCC
Confidence 42 257999999999999999999999999985
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=329.45 Aligned_cols=312 Identities=21% Similarity=0.328 Sum_probs=251.8
Q ss_pred cCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 242 KGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 242 ~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
....+.||.++|.|+.|+|+|.+|+||+.|.++|+||+.+.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--------------------------------------- 147 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--------------------------------------- 147 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC---------------------------------------
Confidence 34568899999999999999999999999999999999874
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeee-Eee-CCCCeE
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLR-VFP-HSNYVT 398 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~-~~~-h~~~V~ 398 (686)
.|.++.++|...|.|++|+||| .||+|+.||+|++||..+++++. .+. |...|+
T Consensus 148 -----------------------Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It 204 (480)
T KOG0271|consen 148 -----------------------TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWIT 204 (480)
T ss_pred -----------------------CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCccccee
Confidence 3778889999999999999999 99999999999999999998764 455 999999
Q ss_pred EEEEeec----CCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee
Q 005646 399 CVHFNPV----DDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 399 ~v~fsp~----~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
+++|.|. ..++|++++.||.|+|||+..+.++ ...+|..+|+|++|--+| +|++|+.|++|++|+...+.+..
T Consensus 205 ~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r- 282 (480)
T KOG0271|consen 205 ALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCR- 282 (480)
T ss_pred EEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHH-
Confidence 9999883 4579999999999999999998877 677899999999998776 89999999999999998876543
Q ss_pred eeEEeeccccCCCCCeEEEEEeC-----------------------------------CCCCeEEEEeCCCcEEEEeCC-
Q 005646 474 AEICVHSKKKAPCKRITGFQFLP-----------------------------------QDSSKVMVSCADSQVRILQGP- 517 (686)
Q Consensus 474 ~~~~~~~~~~~~~~~I~~l~fsp-----------------------------------~~~~~l~~~s~D~~I~iwd~~- 517 (686)
..++|...|+.++++. +.+..|++++.|.++.+|+..
T Consensus 283 -------~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~ 355 (480)
T KOG0271|consen 283 -------ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK 355 (480)
T ss_pred -------hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc
Confidence 2566778888888772 123358888888888888743
Q ss_pred ---------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCC
Q 005646 518 ---------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAE 582 (686)
Q Consensus 518 ---------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~ 582 (686)
+.+.|+||+++||++|-|..|++|+-.+
T Consensus 356 ~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t------------------------------------- 398 (480)
T KOG0271|consen 356 SKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT------------------------------------- 398 (480)
T ss_pred cccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC-------------------------------------
Confidence 3467888888888888888888888766
Q ss_pred CCCcccccCCCCC--cccccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccCccCCC
Q 005646 583 KEPQLHVSDDDSP--ENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHA 660 (686)
Q Consensus 583 ~g~~l~~~~~~~~--~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (686)
|+.+..|.+|-. +.+++|.| ...++++|.|.++++|+..+......+ ++... ..+++- -++
T Consensus 399 -Gk~lasfRGHv~~VYqvawsaD----sRLlVS~SkDsTLKvw~V~tkKl~~DL---pGh~D--------EVf~vD-wsp 461 (480)
T KOG0271|consen 399 -GKFLASFRGHVAAVYQVAWSAD----SRLLVSGSKDSTLKVWDVRTKKLKQDL---PGHAD--------EVFAVD-WSP 461 (480)
T ss_pred -cchhhhhhhccceeEEEEeccC----ccEEEEcCCCceEEEEEeeeeeecccC---CCCCc--------eEEEEE-ecC
Confidence 455666665543 44577888 567788999999999996654422222 11111 223332 345
Q ss_pred CceEEEEecCCCeEeEEe
Q 005646 661 WGLVIVTAGWDGRIRSFL 678 (686)
Q Consensus 661 ~g~~ivT~~~DG~Ir~w~ 678 (686)
+|..+++||.|..+|+|.
T Consensus 462 DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 462 DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceeecCCCceEEEeec
Confidence 699999999999999996
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=323.77 Aligned_cols=269 Identities=21% Similarity=0.360 Sum_probs=232.1
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|.+.+ ..|++++..+++|+.|.++++||+..... ..+.++|...|.|++|+|||+.||||+.||+|++||
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-------~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-------LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-------ceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 455555 45778888999999999999999877654 467889999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
..+++. ....|.+|...|+
T Consensus 186 pktg~~-------------------------------------------------------------~g~~l~gH~K~It 204 (480)
T KOG0271|consen 186 PKTGQQ-------------------------------------------------------------IGRALRGHKKWIT 204 (480)
T ss_pred CCCCCc-------------------------------------------------------------ccccccCccccee
Confidence 998872 3456789999999
Q ss_pred EEEeeCC-----C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-
Q 005646 359 DLSWSKN-----N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV- 430 (686)
Q Consensus 359 ~l~~s~~-----~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~- 430 (686)
+|+|.|- . +|++++.||+|+|||+..++|+..+. |..+|+|+.|- ...+|++|+.|++|++|+...+.+.
T Consensus 205 ~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r 282 (480)
T KOG0271|consen 205 ALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCR 282 (480)
T ss_pred EEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHH
Confidence 9999873 2 89999999999999999999999988 99999999996 4789999999999999999998876
Q ss_pred EEeccCCcEEEEEEc-----------cCCC-------------------------EEEEEecCCcEEEEeCCCCeeeeee
Q 005646 431 DWVDIRQIVTAVCYR-----------PDGQ-------------------------GGIVGSMMGDCRFYNVSDNHLELDA 474 (686)
Q Consensus 431 ~~~~~~~~V~~v~~s-----------pdg~-------------------------~l~~gs~dg~i~iwd~~~~~~~~~~ 474 (686)
.+.+|...|+.++.+ |.|+ .+++|+.|.++.+|+-...+.
T Consensus 283 ~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk---- 358 (480)
T KOG0271|consen 283 ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK---- 358 (480)
T ss_pred hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc----
Confidence 566788888888776 3333 499999999999999765442
Q ss_pred eEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc---------------eeEcCCCCEEEEEeCCCcEE
Q 005646 475 EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV---------------IGKYKDGKHIVSAGEDSNVY 539 (686)
Q Consensus 475 ~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~---------------~~~~~dg~~l~sgs~Dg~V~ 539 (686)
...+..+|..-|+.+.|+| ++.++++++.|..|++|++.+. ++|+.|.++|++||.|.+++
T Consensus 359 ---pi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLK 434 (480)
T KOG0271|consen 359 ---PITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLK 434 (480)
T ss_pred ---chhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEE
Confidence 1223567888899999999 8999999999999999997653 67888999999999999999
Q ss_pred EEeCCCCC
Q 005646 540 MWNCIGHE 547 (686)
Q Consensus 540 iWd~~~~~ 547 (686)
||++.+.+
T Consensus 435 vw~V~tkK 442 (480)
T KOG0271|consen 435 VWDVRTKK 442 (480)
T ss_pred EEEeeeee
Confidence 99999865
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=319.60 Aligned_cols=260 Identities=22% Similarity=0.377 Sum_probs=233.9
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC--CCEEEEEeCCCcEEEEEeecC
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD--GQYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~I~vWd~~~~ 282 (686)
..+.|+.+++.++||+-+|.++||..... ...++|.+|...|.++.|+|. +..||||+.||++++|++.+.
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~~~-------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVPQC-------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecCCc-------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 45889999999999999999999976543 335789999999999999996 668999999999999999764
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
. ++..+.+|...|..++|
T Consensus 252 ~--------------------------------------------------------------~l~~l~gH~~RVs~Vaf 269 (459)
T KOG0272|consen 252 T--------------------------------------------------------------PLQDLEGHLARVSRVAF 269 (459)
T ss_pred c--------------------------------------------------------------chhhhhcchhhheeeee
Confidence 3 67788899999999999
Q ss_pred eCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcE
Q 005646 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIV 439 (686)
Q Consensus 363 s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V 439 (686)
+|+| +|+|++.|.+-++||+.++..+.... |...|.+++|+| +|.+++||+.|..-||||+++++++ .+.+|..+|
T Consensus 270 HPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I 348 (459)
T KOG0272|consen 270 HPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEI 348 (459)
T ss_pred cCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcEEEEecccccce
Confidence 9999 99999999999999999998766655 999999999999 9999999999999999999999877 666899999
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc
Q 005646 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (686)
Q Consensus 440 ~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~ 519 (686)
.+|+|+|+|..||+|+.|++++|||++...... ...+|..-|+.+.|.|+.+.+|++++.|++++||...+.
T Consensus 349 ~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly--------~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~ 420 (459)
T KOG0272|consen 349 LSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY--------TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW 420 (459)
T ss_pred eeEeECCCceEEeecCCCCcEEEeeecccccce--------ecccccchhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence 999999999999999999999999998776532 245677889999999988999999999999999986542
Q ss_pred ---------------eeEcCCCCEEEEEeCCCcEEEEe
Q 005646 520 ---------------IGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 520 ---------------~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
+..++|+++|+|++.|.++++|.
T Consensus 421 ~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 421 SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 56888999999999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=301.07 Aligned_cols=263 Identities=21% Similarity=0.361 Sum_probs=230.5
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeecc
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (686)
+-+.+|..+.|++|++.|||||.+|.++||+..+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-------------------------------------------- 208 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-------------------------------------------- 208 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc--------------------------------------------
Confidence 467899999999999999999999999999987754
Q ss_pred CCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC--C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEe
Q 005646 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFN 403 (686)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fs 403 (686)
.+++|.||...|.++.|+|. + .|+||+.||+|++|++.+..++..+. |...|..++|+
T Consensus 209 ------------------~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafH 270 (459)
T KOG0272|consen 209 ------------------LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFH 270 (459)
T ss_pred ------------------eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeec
Confidence 46788999999999999997 4 99999999999999999999998887 99999999999
Q ss_pred ecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc
Q 005646 404 PVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482 (686)
Q Consensus 404 p~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 482 (686)
| +|++|+|++.|.+-|+||++++..+ ...+|...|.+++|+|||..+++|+.|..-+|||+++++.++. .
T Consensus 271 P-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~--------L 341 (459)
T KOG0272|consen 271 P-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF--------L 341 (459)
T ss_pred C-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE--------e
Confidence 9 9999999999999999999998755 6778999999999999999999999999999999999987653 3
Q ss_pred cCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------cceeEcC-CCCEEEEEeCCCcEEEEeCCCC
Q 005646 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP---------------NVIGKYK-DGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 483 ~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~---------------~~~~~~~-dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.+|.+.|.+++|+| ++..|++|+.|++++|||+. +.+++.| .|.+|+|++.|++++||.-.+.
T Consensus 342 ~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~ 420 (459)
T KOG0272|consen 342 AGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW 420 (459)
T ss_pred cccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence 45789999999999 99999999999999999954 4578887 8999999999999999998774
Q ss_pred CCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCccc--ccCCCccccCccccccCCCCCCCCCC
Q 005646 547 EEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENL--AFAPARFSLGQEYVFESFPKGCATWP 624 (686)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~--~~spd~~~~~~~~~~~s~d~~~~~W~ 624 (686)
. ++++ +.+|...++ ..+|| ++.+.+.+.|++++.|.
T Consensus 421 ~--------~~ks------------------------------LaGHe~kV~s~Dis~d----~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 421 S--------PLKS------------------------------LAGHEGKVISLDISPD----SQAIATSSFDRTIKLWR 458 (459)
T ss_pred c--------cchh------------------------------hcCCccceEEEEeccC----CceEEEeccCceeeecc
Confidence 4 3333 333443333 34666 66777889999999996
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=274.89 Aligned_cols=269 Identities=20% Similarity=0.402 Sum_probs=225.4
Q ss_pred cccCcceeeec---CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 005646 201 DKQGEGERVRL---NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (686)
Q Consensus 201 ~~~~~~~~~s~---~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW 277 (686)
.|.+++..++. +.+.+++++.|..+.+|++..... ......+.|.||...|..+..++||++.++++.|+++|+|
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~--~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlW 90 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI--KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLW 90 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc--ccCceeeeeeccceEecceEEccCCceEEeccccceEEEE
Confidence 46666655542 356889999999999999876533 3333446689999999999999999999999999999999
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCe
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 357 (686)
|+.+++ +.+.|.||...|
T Consensus 91 Dl~~g~--------------------------------------------------------------~t~~f~GH~~dV 108 (315)
T KOG0279|consen 91 DLATGE--------------------------------------------------------------STRRFVGHTKDV 108 (315)
T ss_pred EecCCc--------------------------------------------------------------EEEEEEecCCce
Confidence 999875 456778999999
Q ss_pred eEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecC-CCEEEEEEcCCcEEEEecCCCcEE-EE
Q 005646 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVD-DNYFISGSIDGKVRIWAVLSCHVV-DW 432 (686)
Q Consensus 358 ~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~-~~~l~sgs~Dg~V~iwd~~~~~~~-~~ 432 (686)
++++|++++ .+++||.|++|++|++-......... +.+.|+|+.|+|.. ..+|++++.|++|++||+++.++. .+
T Consensus 109 lsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~ 188 (315)
T KOG0279|consen 109 LSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF 188 (315)
T ss_pred EEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc
Confidence 999999999 99999999999999986554444333 47999999999942 789999999999999999999887 67
Q ss_pred eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
.+|...++.++++|||..+++|+.||.+.+||++.++... ...+...|.+++|+| +...| ....+..|+
T Consensus 189 ~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly---------sl~a~~~v~sl~fsp-nrywL-~~at~~sIk 257 (315)
T KOG0279|consen 189 IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY---------SLEAFDIVNSLCFSP-NRYWL-CAATATSIK 257 (315)
T ss_pred ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE---------eccCCCeEeeEEecC-CceeE-eeccCCceE
Confidence 7899999999999999999999999999999999887543 344668899999999 54444 444555699
Q ss_pred EEeCCc------------------------ceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 513 ILQGPN------------------------VIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 513 iwd~~~------------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
|||..+ .++|++||+.|++|-.|+.|++|.+.
T Consensus 258 Iwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 258 IWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 999542 26788999999999999999999875
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=271.68 Aligned_cols=262 Identities=20% Similarity=0.381 Sum_probs=229.2
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
-.|++++.|.+|++|+... .....+++...+.|+.+...|++++||+|+. ..||+||+.++.
T Consensus 11 viLvsA~YDhTIRfWqa~t-------G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n---------- 72 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALT-------GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN---------- 72 (311)
T ss_pred eEEEeccCcceeeeeehhc-------CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC----------
Confidence 3789999999999996544 3345677777889999999999999999987 689999998875
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s 372 (686)
..|+.++.+|...|+.+.|..+| .+++||
T Consensus 73 --------------------------------------------------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs 102 (311)
T KOG0315|consen 73 --------------------------------------------------PNPVATFEGHTKNVTAVGFQCDGRWMYTGS 102 (311)
T ss_pred --------------------------------------------------CCceeEEeccCCceEEEEEeecCeEEEecC
Confidence 24788999999999999999999 999999
Q ss_pred CCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE--EeccCCcEEEEEEccCCCE
Q 005646 373 IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD--WVDIRQIVTAVCYRPDGQG 450 (686)
Q Consensus 373 ~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg~~ 450 (686)
.||+++|||++...|.+.|.|..+|+++..+| +...|++|..+|.|++||+....+.. .......|.++...|||.+
T Consensus 103 eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm 181 (311)
T KOG0315|consen 103 EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM 181 (311)
T ss_pred CCceEEEEeccCcccchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE
Confidence 99999999999999999999999999999999 88899999999999999999875542 2234578999999999999
Q ss_pred EEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-----------
Q 005646 451 GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV----------- 519 (686)
Q Consensus 451 l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~----------- 519 (686)
++.+...|++++|++-+... ..++....+.++|...|....++| +.++|+++++|.+++||+..+.
T Consensus 182 l~a~nnkG~cyvW~l~~~~~--~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~ 258 (311)
T KOG0315|consen 182 LAAANNKGNCYVWRLLNHQT--ASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ 258 (311)
T ss_pred EEEecCCccEEEEEccCCCc--cccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence 99999999999999977432 233444455788999999999999 8999999999999999987654
Q ss_pred -----eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 520 -----IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 520 -----~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.+|+.||+||+||+.|+.+++|++..++
T Consensus 259 rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 259 RWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred ceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 4577899999999999999999999987
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=274.43 Aligned_cols=276 Identities=21% Similarity=0.366 Sum_probs=233.4
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
++|++|.+.|.+|.|++|.++|++++.||.+.|||.-+....+.+..+..-+...+|.|.. ....
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg-------------~~VA-- 113 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG-------------NFVA-- 113 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCC-------------CeEE--
Confidence 5789999999999999999999999999999999999988888777665444333443332 2111
Q ss_pred eeccCCceEEEeCCcccc--ccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEE
Q 005646 324 LRRTSESACVVFPPKVFR--ILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v 400 (686)
-++.+..|.+|+...-+ -..+..+++.+|.+.+.|+.|-+|++|+|+|.|.++.+||+++++.+..|. |.+.|.++
T Consensus 114 -cGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sl 192 (343)
T KOG0286|consen 114 -CGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSL 192 (343)
T ss_pred -ecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEE
Confidence 13445666666666432 222456778999999999999998899999999999999999999999998 99999999
Q ss_pred EEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEee
Q 005646 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (686)
Q Consensus 401 ~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~ 479 (686)
.++|.+++.|++|+-|+..+|||++.+.++ .+.+|...|++|+|.|+|.-+++|+.|+++|+||++..+.....+
T Consensus 193 sl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys---- 268 (343)
T KOG0286|consen 193 SLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS---- 268 (343)
T ss_pred ecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec----
Confidence 999999999999999999999999999887 566899999999999999999999999999999999876543222
Q ss_pred ccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------cceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP---------------NVIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 480 ~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~---------------~~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
......+|++++|+. .+.+|++|..|.++.+||.. +++..+|||.-|+|||.|.+++||.
T Consensus 269 --~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 269 --HDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --cCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 233457799999999 88999999999999999953 4688999999999999999999995
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=295.97 Aligned_cols=427 Identities=17% Similarity=0.200 Sum_probs=312.2
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecc-cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQA-HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~-H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
..+.+++..|++++..+.+++|++.... ....+++ |++||..|+|+|.|.+|+|||.|+.++|||+..+.+.
T Consensus 68 ~~l~~d~~~L~~a~rs~llrv~~L~tgk-------~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 68 LALTPDEEVLVTASRSQLLRVWSLPTGK-------LIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred eeecCCccEEEEeeccceEEEEEcccch-------HhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 4567788899999999999999887652 2344566 9999999999999999999999999999999999999
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
+.+..+...++.+.|.+.....+. ..+..+....+|+...-+ .+++.+..|.+.|++|+++++
T Consensus 141 h~fkG~gGvVssl~F~~~~~~~lL--------------~sg~~D~~v~vwnl~~~~---tcl~~~~~H~S~vtsL~~~~d 203 (775)
T KOG0319|consen 141 HSFKGHGGVVSSLLFHPHWNRWLL--------------ASGATDGTVRVWNLNDKR---TCLHTMILHKSAVTSLAFSED 203 (775)
T ss_pred EEecCCCceEEEEEeCCccchhhe--------------eecCCCceEEEEEcccCc---hHHHHHHhhhhheeeeeeccC
Confidence 999988877777777665543211 122334444444444222 257888899999999999999
Q ss_pred C-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecC-----CCEEEEEEcCCcEEEEe----------------
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVD-----DNYFISGSIDGKVRIWA---------------- 423 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~-----~~~l~sgs~Dg~V~iwd---------------- 423 (686)
+ .+++++.|+.+.|||+.+.+++++++-...+.++.+-+ + +.+++|.+.+|.+++||
T Consensus 204 ~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~-~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~ 282 (775)
T KOG0319|consen 204 SLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLR-EELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSE 282 (775)
T ss_pred CceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEec-hhcCCcceEEEEecCCceEEEEecccchhhhhhccCCch
Confidence 9 99999999999999997766666664444444444444 3 33555555555555554
Q ss_pred ----------------------------------------------------------------------cCCCcEEEEe
Q 005646 424 ----------------------------------------------------------------------VLSCHVVDWV 433 (686)
Q Consensus 424 ----------------------------------------------------------------------~~~~~~~~~~ 433 (686)
+.+..+.-..
T Consensus 283 e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~ 362 (775)
T KOG0319|consen 283 EIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIP 362 (775)
T ss_pred hhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEe
Confidence 4444444456
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
+|.+.|.++....+|-+|++|+.|.++++|.++++.... .......+|...|.+++++......+++++.|.++++
T Consensus 363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~----~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS----LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchh----hhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 788889999977788899999999999999985443322 1222356788999999999888889999999999999
Q ss_pred EeCC------------------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccc--cccccccccccCC-
Q 005646 514 LQGP------------------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQ--AKTIRSLERFTTN- 566 (686)
Q Consensus 514 wd~~------------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~--~~~~~~~~~~~~~- 566 (686)
|+.. ++++..|+.++|||||.|.+.+||++........+. .+.+.+. .|..+
T Consensus 439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V-~Fs~~d 517 (775)
T KOG0319|consen 439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCV-SFSKND 517 (775)
T ss_pred ecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEE-Eecccc
Confidence 9864 457888999999999999999999999655333322 2333333 45553
Q ss_pred -cEEEecCCCC-cCCCCCCCCcccccCCCCCccc--ccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccch
Q 005646 567 -ASIAIPWCGL-KCGNAEKEPQLHVSDDDSPENL--AFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHK 642 (686)
Q Consensus 567 -~~v~~s~~g~-~~~~~~~g~~l~~~~~~~~~~~--~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~ 642 (686)
....-+-|.+ ++|.+.+...+.+|.+|...++ .|-.+ +..++++.+|+-+++|+..+......+. .
T Consensus 518 q~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~----~~qliS~~adGliKlWnikt~eC~~tlD------~ 587 (775)
T KOG0319|consen 518 QLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRN----GKQLISAGADGLIKLWNIKTNECEMTLD------A 587 (775)
T ss_pred ceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeC----CcEEEeccCCCcEEEEeccchhhhhhhh------h
Confidence 2222233333 7999999999999999988877 45544 6778899999999999987766543331 1
Q ss_pred hhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 643 SQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
|-.-+ .+.+.+ +.+.+|+|||.||.|-+|+.
T Consensus 588 -H~Drv----WaL~~~-~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 588 -HNDRV----WALSVS-PLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred -cccee----EEEeec-CccceeEecCCCeEEEEeec
Confidence 11111 111222 33669999999999999975
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=265.01 Aligned_cols=298 Identities=23% Similarity=0.369 Sum_probs=232.4
Q ss_pred CceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 243 GQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
..++.+|++.|+.++..+. .+.|++++.|.++.+|++.....
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~------------------------------------- 50 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI------------------------------------- 50 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc-------------------------------------
Confidence 3568899999999999886 66899999999999999976420
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEE
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTC 399 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~ 399 (686)
..+.+++.+.||...|.++..+++| +.++++.|+++++||+.++++.+.|- |...|.+
T Consensus 51 --------------------~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVls 110 (315)
T KOG0279|consen 51 --------------------KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLS 110 (315)
T ss_pred --------------------ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEE
Confidence 0125788899999999999999999 99999999999999999998888887 9999999
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc--CCcEEEEEEccC--CCEEEEEecCCcEEEEeCCCCeeeeeee
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI--RQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLELDAE 475 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~--~~~V~~v~~spd--g~~l~~gs~dg~i~iwd~~~~~~~~~~~ 475 (686)
++|+| +...+++|+.|.+|.+|++........... ++.|++++|+|+ ..+|+.++.|++|++||+++.++..
T Consensus 111 va~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~--- 186 (315)
T KOG0279|consen 111 VAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT--- 186 (315)
T ss_pred EEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh---
Confidence 99999 999999999999999999998877766554 788999999997 6799999999999999998876543
Q ss_pred EEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccc
Q 005646 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAK 555 (686)
Q Consensus 476 ~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~ 555 (686)
...+|.+.++.+.++| ||..+++|+.||.+.+||++.++
T Consensus 187 -----~~~gh~~~v~t~~vSp----------------------------DGslcasGgkdg~~~LwdL~~~k-------- 225 (315)
T KOG0279|consen 187 -----TFIGHSGYVNTVTVSP----------------------------DGSLCASGGKDGEAMLWDLNEGK-------- 225 (315)
T ss_pred -----ccccccccEEEEEECC----------------------------CCCEEecCCCCceEEEEEccCCc--------
Confidence 2456788899999999 99999999999999999999876
Q ss_pred cccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCcCCCccccc
Q 005646 556 TIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLS 635 (686)
Q Consensus 556 ~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~ 635 (686)
.+.+++++... ..++|+|.++.+. ...+..+++|+.+.....-.+.
T Consensus 226 ~lysl~a~~~v-----------------------------~sl~fspnrywL~-----~at~~sIkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 226 NLYSLEAFDIV-----------------------------NSLCFSPNRYWLC-----AATATSIKIWDLESKAVVEELK 271 (315)
T ss_pred eeEeccCCCeE-----------------------------eeEEecCCceeEe-----eccCCceEEEeccchhhhhhcc
Confidence 34455444332 3356677654444 2234457888866544322211
Q ss_pred cccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 636 SASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
.-..-. .-+.-.-.|...+ .+++|+.|..|-.||.||+|+.
T Consensus 272 ~d~~g~--s~~~~~~~clsla-ws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 272 LDGIGP--SSKAGDPICLSLA-WSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred cccccc--ccccCCcEEEEEE-EcCCCcEEEeeecCCcEEEEEe
Confidence 000000 0011111355443 4556999999999999999986
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=304.76 Aligned_cols=245 Identities=27% Similarity=0.462 Sum_probs=214.0
Q ss_pred CcceeeecCCCccceeeccceEEEEEcCCcc-------ccc-----------------cccccCceecccCCceEEEEEe
Q 005646 204 GEGERVRLNEEDAMFCSKVQRVKVYHCKKRS-------KEL-----------------SALYKGQEIQAHDGSILTMKFS 259 (686)
Q Consensus 204 ~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~-------~~~-----------------~~~~~~~~l~~H~~~I~~l~fs 259 (686)
..+..|+.+...+|.|-.|..|++|.+.... ..+ .......++.||.++|..+.|+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs 460 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS 460 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence 3567788888999999999999999987311 000 1112224588999999999999
Q ss_pred eCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCcc
Q 005646 260 PDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKV 339 (686)
Q Consensus 260 pdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (686)
|+.++|+++++|++||+|.+.+..
T Consensus 461 Pd~rfLlScSED~svRLWsl~t~s-------------------------------------------------------- 484 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDTWS-------------------------------------------------------- 484 (707)
T ss_pred ccccceeeccCCcceeeeecccce--------------------------------------------------------
Confidence 999999999999999999998765
Q ss_pred ccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCC
Q 005646 340 FRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDG 417 (686)
Q Consensus 340 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg 417 (686)
.+..++||..+|+++.|+|.| ++||+|.|++.++|.....++++.|. |.+.|.|+.|+| +.+|+++||.|.
T Consensus 485 ------~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~ 557 (707)
T KOG0263|consen 485 ------CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDR 557 (707)
T ss_pred ------eEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccCCCCc
Confidence 344567899999999999999 99999999999999999999999998 999999999999 999999999999
Q ss_pred cEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 418 KVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 418 ~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
+||+||+.++..+ .+.+|+.+|++++|+|+|++|++|+.||.|.+||+.++.+.. ....|.+.|+++.|+.
T Consensus 558 tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~--------~l~~Ht~ti~SlsFS~ 629 (707)
T KOG0263|consen 558 TVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK--------QLKGHTGTIYSLSFSR 629 (707)
T ss_pred eEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh--------hhhcccCceeEEEEec
Confidence 9999999999888 456899999999999999999999999999999999887653 2456778999999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 497 QDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 497 ~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
||..||+||.|.+|++||+....
T Consensus 630 ----------------------------dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 630 ----------------------------DGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ----------------------------CCCEEEecCCCCeEEEEEchhhc
Confidence 88899999999999999887644
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=276.23 Aligned_cols=423 Identities=15% Similarity=0.200 Sum_probs=290.6
Q ss_pred ccCcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC--CCcEEEEEe
Q 005646 202 KQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD--DGVVRLWQV 279 (686)
Q Consensus 202 ~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~--Dg~I~vWd~ 279 (686)
++..+.+++|+|.++++|...|+|+||+......-+ ..+++.-.++|..|+|++|++.|+..|+ ++..+++-.
T Consensus 60 ~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiL-----Knef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~ 134 (603)
T KOG0318|consen 60 HQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHIL-----KNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLW 134 (603)
T ss_pred ceeEEEEeCCCceEEeecCCcCcEEEEeccCcceee-----eeeeeecccccccceeCCCCcEEEEEecCccceeEEEEe
Confidence 344578899999999999999999999986543322 4667778899999999999999988875 333444444
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.+|..+.++..+......+.|.+..+ +.....+.+..+..|.-.-| +...+++.|...|.|
T Consensus 135 DSG~SvGei~GhSr~ins~~~KpsRP---------------fRi~T~sdDn~v~ffeGPPF----KFk~s~r~HskFV~~ 195 (603)
T KOG0318|consen 135 DSGNSVGEITGHSRRINSVDFKPSRP---------------FRIATGSDDNTVAFFEGPPF----KFKSSFREHSKFVNC 195 (603)
T ss_pred cCCCccceeeccceeEeeeeccCCCc---------------eEEEeccCCCeEEEeeCCCe----eeeecccccccceee
Confidence 56666666665554443333333222 12222333333333332222 223556789999999
Q ss_pred EEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE---
Q 005646 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD--- 431 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~--- 431 (686)
+.|+||| ++++++.||+|.+||-.++..+..+. |.+.|.++.|+| |+..|+|++.|.+++|||+.+.+++.
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~ 274 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWP 274 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEee
Confidence 9999999 99999999999999999999998886 999999999999 99999999999999999997754321
Q ss_pred -----------------------------------------EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 432 -----------------------------------------WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 432 -----------------------------------------~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
..+|...|+++..+||+++|++|+.||.|.-|+...+..
T Consensus 275 ~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 275 MGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred cCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence 235677899999999999999999999999999977653
Q ss_pred eeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC----------------------------------
Q 005646 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG---------------------------------- 516 (686)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~---------------------------------- 516 (686)
-.. ....|...|.+++-+. ...+++.+.|.++++.+.
T Consensus 355 ~~~-------~g~~h~nqI~~~~~~~--~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~ 425 (603)
T KOG0318|consen 355 DRL-------AGKGHTNQIKGMAASE--SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACI 425 (603)
T ss_pred ccc-------ccccccceEEEEeecC--CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEec
Confidence 210 0133445555555443 234555555555555532
Q ss_pred --------------------CcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCC
Q 005646 517 --------------------PNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGL 576 (686)
Q Consensus 517 --------------------~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~ 576 (686)
..+++++|+++.++.|+.||.|+||.+...... ......++-.....+++++++.
T Consensus 426 ~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~-----ee~~~~~h~a~iT~vaySpd~~ 500 (603)
T KOG0318|consen 426 SDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK-----EEAKLLEHRAAITDVAYSPDGA 500 (603)
T ss_pred CcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccc-----ceeeeecccCCceEEEECCCCc
Confidence 134678889999999999999999999986621 1112222222366777888766
Q ss_pred -----------cCCCCCCCCccc---ccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccch
Q 005646 577 -----------KCGNAEKEPQLH---VSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHK 642 (686)
Q Consensus 577 -----------~~~~~~~g~~l~---~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~ 642 (686)
.+|+..+..... .|+......++|+|+ ...+.+++.|.++.+|+.++.... +....++..
T Consensus 501 yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~----n~~vATGSlDt~Viiysv~kP~~~--i~iknAH~~ 574 (603)
T KOG0318|consen 501 YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN----NKLVATGSLDTNVIIYSVKKPAKH--IIIKNAHLG 574 (603)
T ss_pred EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCC----ceEEEeccccceEEEEEccChhhh--eEecccccc
Confidence 256655554421 123333456689999 556668999999999997764421 111111111
Q ss_pred hhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 643 SQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
+. ..+ .=.+...+|++|.|..||+|+.
T Consensus 575 gV--------n~v--~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 575 GV--------NSV--AWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred Cc--------eeE--EEecCceEEeccCcceeEEecc
Confidence 11 111 0113458999999999999974
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=253.63 Aligned_cols=277 Identities=20% Similarity=0.327 Sum_probs=231.8
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|..++ ..++++.+++++++.||++.|||.-+..|+ +.+.--...|..++|+|.|+++|.||-|....||+
T Consensus 53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-------haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-------HAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-------eEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 455555 456778889999999999999997766553 33455678999999999999999999999999999
Q ss_pred eecC------eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc
Q 005646 279 VVED------ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (686)
Q Consensus 279 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (686)
+.+. ...+++..+..-.+|+.|..+. ..+..+++..|..|+... .+.+..|.|
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-----------------~ilT~SGD~TCalWDie~----g~~~~~f~G 184 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-----------------HILTGSGDMTCALWDIET----GQQTQVFHG 184 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcCCC-----------------ceEecCCCceEEEEEccc----ceEEEEecC
Confidence 9865 2334455555555555555422 224567778888877664 357889999
Q ss_pred CCCCeeEEEeeC-CC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE
Q 005646 353 HSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 353 h~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
|.+.|.+|+++| ++ .+++|+.|++.+|||++.+.|.+.|. |...|++|.|.| ++.-|++|+.|++.|+||++..+.
T Consensus 185 H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~ 263 (343)
T KOG0286|consen 185 HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQE 263 (343)
T ss_pred CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecCCcE
Confidence 999999999999 55 99999999999999999999999998 999999999999 999999999999999999999888
Q ss_pred EEEeccC---CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 430 VDWVDIR---QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 430 ~~~~~~~---~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
+..+.+. .+|++++|+..|++|++|..|.++.+||.-.++... ...+|..+|+++..+| ++..+++|+
T Consensus 264 ~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg--------~L~GHeNRvScl~~s~-DG~av~TgS 334 (343)
T KOG0286|consen 264 LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG--------VLAGHENRVSCLGVSP-DGMAVATGS 334 (343)
T ss_pred EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE--------EeeccCCeeEEEEECC-CCcEEEecc
Confidence 8766654 579999999999999999999999999986665432 2457889999999999 999999999
Q ss_pred CCCcEEEEe
Q 005646 507 ADSQVRILQ 515 (686)
Q Consensus 507 ~D~~I~iwd 515 (686)
.|..+|||.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999994
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=272.45 Aligned_cols=236 Identities=26% Similarity=0.436 Sum_probs=200.9
Q ss_pred cCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 242 KGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 242 ~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
..+.++.|+..|+-+.||++|+||||++.|.+..||++.....+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~------------------------------------ 259 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF------------------------------------ 259 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce------------------------------------
Confidence 34678899999999999999999999999999999998654311
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeC--CCCeE
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPH--SNYVT 398 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h--~~~V~ 398 (686)
+..+++.+|..+|.-+.||||. +|++++.|..+.+||+.++.+...+.+ ...+.
T Consensus 260 -----------------------kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~ 316 (519)
T KOG0293|consen 260 -----------------------KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVS 316 (519)
T ss_pred -----------------------eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcc
Confidence 3467888999999999999999 999999999999999999999999984 48999
Q ss_pred EEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccC-CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE
Q 005646 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR-QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (686)
Q Consensus 399 ~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~-~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~ 477 (686)
+++|.| |+..|++|+.|+++..||+.....-.|.+.+ ..|.++++++||+++++.+.|..|++|+..+.....
T Consensus 317 sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~----- 390 (519)
T KOG0293|consen 317 SCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG----- 390 (519)
T ss_pred eeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc-----
Confidence 999999 9999999999999999999887766777665 459999999999999999999999999987543221
Q ss_pred eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcce-----------------eEc-CCCCEEEEEeCCCcEE
Q 005646 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI-----------------GKY-KDGKHIVSAGEDSNVY 539 (686)
Q Consensus 478 ~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~-----------------~~~-~dg~~l~sgs~Dg~V~ 539 (686)
......+|++++.+. +++++++.-.+..|++||..... ||- .+..++++||+|+.||
T Consensus 391 ----lise~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvy 465 (519)
T KOG0293|consen 391 ----LISEEQPITSFSISK-DGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVY 465 (519)
T ss_pred ----cccccCceeEEEEcC-CCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEE
Confidence 122336799999999 88999999999999999976421 111 1668999999999999
Q ss_pred EEeCCCCC
Q 005646 540 MWNCIGHE 547 (686)
Q Consensus 540 iWd~~~~~ 547 (686)
||+..+++
T Consensus 466 IWhr~sgk 473 (519)
T KOG0293|consen 466 IWHRISGK 473 (519)
T ss_pred EEEccCCc
Confidence 99988755
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=266.74 Aligned_cols=311 Identities=19% Similarity=0.280 Sum_probs=239.1
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.+.+++++|+.+++++.|++|.+||-+...+.. ....-.+|++.|.+++|+||+..++|++.|.+++|||+.+.++
T Consensus 194 ~~VRysPDG~~Fat~gsDgki~iyDGktge~vg----~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 194 NCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVG----ELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred eeEEECCCCCeEEEecCCccEEEEcCCCccEEE----EecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence 457788999999999999999999876554311 1111348999999999999999999999999999999999998
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
+.++.....-. .+...+.|.++....+ +..+.+-.+++.. ..+++.+.||...|++|..+|
T Consensus 270 v~t~~~~~~v~----------dqqvG~lWqkd~lItV-----Sl~G~in~ln~~d----~~~~~~i~GHnK~ITaLtv~~ 330 (603)
T KOG0318|consen 270 VSTWPMGSTVE----------DQQVGCLWQKDHLITV-----SLSGTINYLNPSD----PSVLKVISGHNKSITALTVSP 330 (603)
T ss_pred EEEeecCCchh----------ceEEEEEEeCCeEEEE-----EcCcEEEEecccC----CChhheecccccceeEEEEcC
Confidence 88876554311 1111222221111111 1122222222222 237788999999999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc-------------
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH------------- 428 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~------------- 428 (686)
++ +|++|+.||.|.-|+..++.+-+... |...|.+++-+. ...+++++.|.+|++.++....
T Consensus 331 d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~--~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP 408 (603)
T KOG0318|consen 331 DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE--SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQP 408 (603)
T ss_pred CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC--CCcEEEEecCCeEEEEecccCcccccceeecCCCc
Confidence 99 99999999999999999998887764 999999999864 4667888999999999774210
Q ss_pred -------------------EEEE--------eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 429 -------------------VVDW--------VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 429 -------------------~~~~--------~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
++.+ ....-...+++++|+++.+++|+.||.|+||.+....+.-.. .
T Consensus 409 ~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~------~ 482 (603)
T KOG0318|consen 409 KGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEA------K 482 (603)
T ss_pred eeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccccee------e
Confidence 0001 112234678999999999999999999999999987653222 2
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC----------------cceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP----------------NVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~----------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
...|..+|+.++|+| ++.+|+++...+.+-+||.. ++++|+|+.+++||||.|-.|.||+++.
T Consensus 483 ~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 483 LLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred eecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 345778999999999 89999999999999999964 4589999999999999999999999988
Q ss_pred CC
Q 005646 546 HE 547 (686)
Q Consensus 546 ~~ 547 (686)
+.
T Consensus 562 P~ 563 (603)
T KOG0318|consen 562 PA 563 (603)
T ss_pred hh
Confidence 65
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=279.12 Aligned_cols=236 Identities=24% Similarity=0.430 Sum_probs=204.0
Q ss_pred CceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 243 GQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
...+.+|+..|.++.|.| .+.+|+++|.|+.|+||++....
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-------------------------------------- 248 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-------------------------------------- 248 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--------------------------------------
Confidence 467899999999999999 89999999999999999997633
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEE
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCV 400 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v 400 (686)
+++++|.||..+|.+++|+++| .++|+|.|++|++||+++|+++..|.....++|+
T Consensus 249 -----------------------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cv 305 (503)
T KOG0282|consen 249 -----------------------RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCV 305 (503)
T ss_pred -----------------------ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceee
Confidence 4678899999999999999999 9999999999999999999999999999999999
Q ss_pred EEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe-ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEee
Q 005646 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (686)
Q Consensus 401 ~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~ 479 (686)
.|+|.+.+.|++|+.|++|+.||+++++++... .|-+.|..+.|-++|+++++.+.|++++||+....-.....
T Consensus 306 kf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i----- 380 (503)
T KOG0282|consen 306 KFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNI----- 380 (503)
T ss_pred ecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhh-----
Confidence 999955599999999999999999999988544 46688999999999999999999999999998765432211
Q ss_pred ccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC--------------------cceeEcCCCCEEEEEeCCCcEE
Q 005646 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP--------------------NVIGKYKDGKHIVSAGEDSNVY 539 (686)
Q Consensus 480 ~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~--------------------~~~~~~~dg~~l~sgs~Dg~V~ 539 (686)
...+.....++..+| +++.++.-+.|+.|.++... ..+.|+|||.+|++|+.||.++
T Consensus 381 --~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~ 457 (503)
T KOG0282|consen 381 --ADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVN 457 (503)
T ss_pred --cchhhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEE
Confidence 112223477899999 78888888999999988743 2367888999999999999999
Q ss_pred EEeCCCCC
Q 005646 540 MWNCIGHE 547 (686)
Q Consensus 540 iWd~~~~~ 547 (686)
+||.++-+
T Consensus 458 ~wdwkt~k 465 (503)
T KOG0282|consen 458 FWDWKTTK 465 (503)
T ss_pred Eeechhhh
Confidence 99988754
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=272.88 Aligned_cols=264 Identities=22% Similarity=0.334 Sum_probs=229.3
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.+.++.++|..|++|+..|.+.+|+...... ...+++|..+|++|.|+++|.+++||..+|.|++|+..-..
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-------EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn- 171 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-------ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN- 171 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceeeH-------HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-
Confidence 4567789999999999999999997532221 13467899999999999999999999999999999975432
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc-CCCCeeEEEee
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG-HSGEILDLSWS 363 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~s 363 (686)
++.+++ |...|.+++|+
T Consensus 172 --------------------------------------------------------------Vk~~~ahh~eaIRdlafS 189 (464)
T KOG0284|consen 172 --------------------------------------------------------------VKIIQAHHAEAIRDLAFS 189 (464)
T ss_pred --------------------------------------------------------------hHHhhHhhhhhhheeccC
Confidence 233344 45899999999
Q ss_pred CCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEE
Q 005646 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVT 440 (686)
Q Consensus 364 ~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~ 440 (686)
|+. .++++|.|++|+|||....+.-..+. |.-.|.|++|+| ...++++|+.|..|++||.+++.++ .+..|+..|.
T Consensus 190 pnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl 268 (464)
T KOG0284|consen 190 PNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVL 268 (464)
T ss_pred CCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEE
Confidence 987 99999999999999999988877777 999999999999 8899999999999999999999988 6678899999
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP--- 517 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~--- 517 (686)
++.|+|++++|++++.|..|++||+++.+..+ ..++|.+.++++.|+|-...++.+++.||.|..|...
T Consensus 269 ~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~--------~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 269 AVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF--------TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred EEEEcCCCCeeEEccCCceEEEEehhHhHHHH--------HhhcchhhheeeccccccccceeeccCCCceEEEeccccc
Confidence 99999999999999999999999998544322 2466889999999999999999999999999999854
Q ss_pred -------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 518 -------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 518 -------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..++++|=|..|++|+.|.++++|.-..+.
T Consensus 341 p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 341 PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred cccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCCC
Confidence 237889999999999999999999876644
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=272.31 Aligned_cols=380 Identities=18% Similarity=0.256 Sum_probs=297.1
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccc-cccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSK-ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~-~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
.+..|+++|..+|.+ ..+.+.||...+..+ ++......+++.+|-..|++|.|+.|.++|++|+.|.++|||.+...+
T Consensus 100 ~~i~fSPng~~fav~-~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k 178 (893)
T KOG0291|consen 100 GAIKFSPNGKFFAVG-CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNK 178 (893)
T ss_pred ceEEECCCCcEEEEE-ecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccc
Confidence 446777887776654 567899999877655 566666677889999999999999999999999999999999997654
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
. -..+.+.+|.+.|...-|.
T Consensus 179 ~------------------------------------------------------------~~~~~l~gHkd~VvacfF~ 198 (893)
T KOG0291|consen 179 N------------------------------------------------------------LFTYALNGHKDYVVACFFG 198 (893)
T ss_pred c------------------------------------------------------------cceEeccCCCcceEEEEec
Confidence 1 1245677999999999999
Q ss_pred CCC-EEEEEECCCcEEEEECCC-----------------------Cee-----e--eE----ee-CCCCeEEEEEeecCC
Q 005646 364 KNN-YLLSASIDKTVRLWRVGN-----------------------DHC-----L--RV----FP-HSNYVTCVHFNPVDD 407 (686)
Q Consensus 364 ~~~-~L~s~s~Dg~V~iWd~~~-----------------------~~~-----~--~~----~~-h~~~V~~v~fsp~~~ 407 (686)
.+. .|++.+.||.+.+|.... ++. . +. +. ....|++.+||+ .-
T Consensus 199 ~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t 277 (893)
T KOG0291|consen 199 ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-GT 277 (893)
T ss_pred cCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-Cc
Confidence 988 999999999999998761 100 0 01 11 337899999999 88
Q ss_pred CEEEEEEcCCcEEEEecCCCcEEEEecc-CCcEEEEEEccCCCEEEEEecC-CcEEEEeCCCCeeeeeeeEEeeccccCC
Q 005646 408 NYFISGSIDGKVRIWAVLSCHVVDWVDI-RQIVTAVCYRPDGQGGIVGSMM-GDCRFYNVSDNHLELDAEICVHSKKKAP 485 (686)
Q Consensus 408 ~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-~~~V~~v~~spdg~~l~~gs~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 485 (686)
++|++|-..|...+|.+....++..... ..+|..++|+..|.+||.|+.. |.+-||+......++ +..+|
T Consensus 278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl--------KQQgH 349 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL--------KQQGH 349 (893)
T ss_pred eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee--------ecccc
Confidence 9999999999999999999998866655 4789999999999999998775 899999988766544 24567
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 005646 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPA 550 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~ 550 (686)
...+++++++| |++++++|+.||.|+|||... .++|...|+.|++.+.||+|+.||+....
T Consensus 350 ~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr--- 425 (893)
T KOG0291|consen 350 SDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR--- 425 (893)
T ss_pred ccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc---
Confidence 88999999999 899999999999999999654 46677799999999999999999998765
Q ss_pred ccccccccccccccC--CcEEEecCCCC------------cCCCCCCCCcccccCCCCCccc--ccCCCccccCcccccc
Q 005646 551 HDQAKTIRSLERFTT--NASIAIPWCGL------------KCGNAEKEPQLHVSDDDSPENL--AFAPARFSLGQEYVFE 614 (686)
Q Consensus 551 ~~~~~~~~~~~~~~~--~~~v~~s~~g~------------~~~~~~~g~~l~~~~~~~~~~~--~~spd~~~~~~~~~~~ 614 (686)
..+++..-.+ -..+++.++|. .+|+..||+.+-.+.+|.+++. +|+|+ ++.+.++
T Consensus 426 -----NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~----~~~LaS~ 496 (893)
T KOG0291|consen 426 -----NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD----GSLLASG 496 (893)
T ss_pred -----eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc----cCeEEec
Confidence 2222222111 13445554443 4899999999999999998876 59999 5667789
Q ss_pred CCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 615 SFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 615 s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
|.|+++++|+.=.... . ...+.. .+....+ .++++|.-|+.+..||.|-+|.-
T Consensus 497 SWDkTVRiW~if~s~~--~---vEtl~i------~sdvl~v-sfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 497 SWDKTVRIWDIFSSSG--T---VETLEI------RSDVLAV-SFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred cccceEEEEEeeccCc--e---eeeEee------ccceeEE-EEcCCCCeEEEEEecceEEEEEh
Confidence 9999999999321100 0 111111 1123333 45667999999999999999974
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-32 Score=255.00 Aligned_cols=234 Identities=25% Similarity=0.447 Sum_probs=208.3
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
..+.+|++.|..+.|+|+|.+|||||.|..|.+|++....
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc---------------------------------------- 80 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC---------------------------------------- 80 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc----------------------------------------
Confidence 3578999999999999999999999999999999975432
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~ 401 (686)
+-...+++|+++|..+.|.+++ .|++++.|++|+.||++++++++.++ |..-|++++
T Consensus 81 ---------------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~ 139 (338)
T KOG0265|consen 81 ---------------------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD 139 (338)
T ss_pred ---------------------cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecC
Confidence 2234566899999999999999 99999999999999999999999998 999999999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
-+..+..++.+|+.||++++||+++...+.++..+.+++++.|..++..+++|+.|+.|++||++.+.... .
T Consensus 140 p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~--------~ 211 (338)
T KOG0265|consen 140 PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY--------T 211 (338)
T ss_pred ccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceE--------E
Confidence 65555678889999999999999999999888889999999999999999999999999999998776543 2
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-----------------------ceeEcCCCCEEEEEeCCCcE
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-----------------------VIGKYKDGKHIVSAGEDSNV 538 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-----------------------~~~~~~dg~~l~sgs~Dg~V 538 (686)
..+|..+|+++..+| ++..+++-+.|.++++||... ..+|+|++..+..|+.|..|
T Consensus 212 lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~v 290 (338)
T KOG0265|consen 212 LSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFV 290 (338)
T ss_pred eecccCceeeEEecc-CCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceE
Confidence 567889999999999 889999999999999999642 14688899999999999999
Q ss_pred EEEeCCCCC
Q 005646 539 YMWNCIGHE 547 (686)
Q Consensus 539 ~iWd~~~~~ 547 (686)
++||.....
T Consensus 291 yvwd~~~r~ 299 (338)
T KOG0265|consen 291 YVWDTTSRR 299 (338)
T ss_pred EEeeccccc
Confidence 999987643
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-31 Score=276.52 Aligned_cols=260 Identities=22% Similarity=0.412 Sum_probs=222.9
Q ss_pred eecCCCccceeec-cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeee
Q 005646 209 VRLNEEDAMFCSK-VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTE 287 (686)
Q Consensus 209 ~s~~~~~l~~g~~-d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~ 287 (686)
+...|++++.|+. -|++.||++.....- -..++|...|++++++|||+++|||++||.|+|||...+-
T Consensus 315 ~N~tGDWiA~g~~klgQLlVweWqsEsYV-------lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf---- 383 (893)
T KOG0291|consen 315 FNSTGDWIAFGCSKLGQLLVWEWQSESYV-------LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF---- 383 (893)
T ss_pred ecccCCEEEEcCCccceEEEEEeecccee-------eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce----
Confidence 3344899988764 489999988765432 3367899999999999999999999999999999998875
Q ss_pred eccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-
Q 005646 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN- 366 (686)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~- 366 (686)
++.+|..|+..|+.+.|+..|
T Consensus 384 ----------------------------------------------------------C~vTFteHts~Vt~v~f~~~g~ 405 (893)
T KOG0291|consen 384 ----------------------------------------------------------CFVTFTEHTSGVTAVQFTARGN 405 (893)
T ss_pred ----------------------------------------------------------EEEEeccCCCceEEEEEEecCC
Confidence 456777899999999999999
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCC-cEEEEecCCCcEEE-EeccCCcEEEE
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG-KVRIWAVLSCHVVD-WVDIRQIVTAV 442 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg-~V~iwd~~~~~~~~-~~~~~~~V~~v 442 (686)
.|+++|.||+||.||+...++.++|. ......|++..| .+.++..|+.|. .|.+|++.+|+++. +.+|.++|.++
T Consensus 406 ~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l 484 (893)
T KOG0291|consen 406 VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGL 484 (893)
T ss_pred EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceee
Confidence 99999999999999999999999998 445567899988 899999999886 59999999999995 56899999999
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC-----
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP----- 517 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~----- 517 (686)
+|+|+|..|++|+.|.+||+||+-......+. ..+...+.++.|.| +++.|+++.-||+|.+||..
T Consensus 485 ~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt--------l~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 485 SFSPDGSLLASGSWDKTVRIWDIFSSSGTVET--------LEIRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred EEccccCeEEeccccceEEEEEeeccCceeee--------EeeccceeEEEEcC-CCCeEEEEEecceEEEEEhhhceee
Confidence 99999999999999999999998655322211 11235699999999 89999999999999999853
Q ss_pred ------------------------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 518 ------------------------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 518 ------------------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.+++++||++|++||+...|+||++.++-
T Consensus 556 ~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 556 GSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred ccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 226777899999999999999999999875
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=259.85 Aligned_cols=271 Identities=19% Similarity=0.323 Sum_probs=214.1
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
.+++.+|..||+|..+|.++||+..... ..+|..|+++|.+++|+..|.||++++.|+++.+||..++....
T Consensus 241 L~Wn~~G~~LatG~~~G~~riw~~~G~l--------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 241 LDWNNDGTLLATGSEDGEARIWNKDGNL--------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred EEecCCCCeEEEeecCcEEEEEecCchh--------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence 4455669999999999999999865432 24577799999999999999999999999999999999999888
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~ 366 (686)
.+.++..+.--+.+..+. ..+.-+.++...+..+. ...|+.++.||.++|.+|.|+|.+
T Consensus 313 ~f~~~s~~~lDVdW~~~~----~F~ts~td~~i~V~kv~-----------------~~~P~~t~~GH~g~V~alk~n~tg 371 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSND----EFATSSTDGCIHVCKVG-----------------EDRPVKTFIGHHGEVNALKWNPTG 371 (524)
T ss_pred eeeeccCCccceEEecCc----eEeecCCCceEEEEEec-----------------CCCcceeeecccCceEEEEECCCC
Confidence 888776652222221111 00001111111111111 126889999999999999999999
Q ss_pred -EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeec--------CCCEEEEEEcCCcEEEEecCCCcEE-EEecc
Q 005646 367 -YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV--------DDNYFISGSIDGKVRIWAVLSCHVV-DWVDI 435 (686)
Q Consensus 367 -~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~--------~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~ 435 (686)
+|+++|.|+|++||.+....+...+. |...|..+.|+|. .+..+++++.|++|++||+..+.++ .+..|
T Consensus 372 ~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH 451 (524)
T KOG0273|consen 372 SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH 451 (524)
T ss_pred ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC
Confidence 99999999999999999999988888 9999999999983 3468999999999999999999887 45599
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
..+|.+++|+|+|+++|+|+.||.|.+|++.++++... ....+.|..++|+. ++.+|..+..|+.+++.|
T Consensus 452 ~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s---------~~~~~~Ifel~Wn~-~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 452 QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS---------YQGTGGIFELCWNA-AGDKLGACASDGSVCVLD 521 (524)
T ss_pred CCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe---------ecCCCeEEEEEEcC-CCCEEEEEecCCCceEEE
Confidence 99999999999999999999999999999999886542 12335699999999 556777777777776665
Q ss_pred C
Q 005646 516 G 516 (686)
Q Consensus 516 ~ 516 (686)
.
T Consensus 522 l 522 (524)
T KOG0273|consen 522 L 522 (524)
T ss_pred e
Confidence 4
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-30 Score=240.33 Aligned_cols=262 Identities=20% Similarity=0.363 Sum_probs=214.0
Q ss_pred ccCcceeee--cC-CCccceeeccceEEEEEcCC-ccccccccccCcee-cccCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 005646 202 KQGEGERVR--LN-EEDAMFCSKVQRVKVYHCKK-RSKELSALYKGQEI-QAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (686)
Q Consensus 202 ~~~~~~~~s--~~-~~~l~~g~~d~~v~vw~~~~-~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~I~v 276 (686)
|.+.+-.+. +. |..+++++.|+.|+||+... ..... ...+ .+|+..|+.++|+|.|+|||+|+.|.++.|
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~c-----k~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTC-----KTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEE-----EEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 444444444 43 44799999999999998773 22111 1122 379999999999999999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
|.-..++- +.+..+.||..+
T Consensus 88 w~k~~~ef------------------------------------------------------------ecv~~lEGHEnE 107 (312)
T KOG0645|consen 88 WKKEDGEF------------------------------------------------------------ECVATLEGHENE 107 (312)
T ss_pred eecCCCce------------------------------------------------------------eEEeeeeccccc
Confidence 98654430 356788999999
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCCC---eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC---c
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGND---HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC---H 428 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~---~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~---~ 428 (686)
|.+++|+++| +||+++.|+.|-||.+..+ .|+..++ |...|..+.|+| ...+|++++.|.+|++|+-... .
T Consensus 108 VK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~ 186 (312)
T KOG0645|consen 108 VKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWE 186 (312)
T ss_pred eeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCee
Confidence 9999999999 9999999999999999754 5777787 999999999999 9999999999999999987732 2
Q ss_pred EE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 429 VV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 429 ~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
++ .+.+|...|.+++|+|.|..|++++.|++++||-....- ...|..+++.+.|. ...|++++.
T Consensus 187 c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~------------~~~~sr~~Y~v~W~---~~~IaS~gg 251 (312)
T KOG0645|consen 187 CVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL------------SGMHSRALYDVPWD---NGVIASGGG 251 (312)
T ss_pred EEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc------------chhcccceEeeeec---ccceEeccC
Confidence 33 566777899999999999999999999999999865221 23355779999998 368999999
Q ss_pred CCcEEEEeC----------------------CcceeEcCC-CCEEEEEeCCCcEEEEeCC
Q 005646 508 DSQVRILQG----------------------PNVIGKYKD-GKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 508 D~~I~iwd~----------------------~~~~~~~~d-g~~l~sgs~Dg~V~iWd~~ 544 (686)
|+.|+++.. .+.+++.|. ..+|++|+.||.|++|.+.
T Consensus 252 D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 252 DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 999999952 245788884 7899999999999999875
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.4e-31 Score=249.40 Aligned_cols=272 Identities=18% Similarity=0.296 Sum_probs=228.3
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|.+++ ..|.|+|..+++|+.|..|.+|+.....+.. -.+++|+++|..+.|.+|++.|+++|.|++|+.||
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~------~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF------WVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce------eeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 456665 5688888999999999999999966544433 34679999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+++|++ ++.+++|..-|+
T Consensus 119 ~~tG~~--------------------------------------------------------------~rk~k~h~~~vN 136 (338)
T KOG0265|consen 119 AETGKR--------------------------------------------------------------IRKHKGHTSFVN 136 (338)
T ss_pred ccccee--------------------------------------------------------------eehhccccceee
Confidence 999873 455667999999
Q ss_pred EEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEecc
Q 005646 359 DLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDI 435 (686)
Q Consensus 359 ~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~ 435 (686)
.+.-+.-| ++.+++.|++++|||+++..+++++...-.++++.|.. .+..+++|+.|+.|++||++..... .+.+|
T Consensus 137 s~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh 215 (338)
T KOG0265|consen 137 SLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGH 215 (338)
T ss_pred ecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecc
Confidence 99865556 77899999999999999999999999999999999998 8999999999999999999988766 67789
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
..+|+.+..+|+|.++.+-+.|.++++||++.............+....-.......+|+| ++..+.+++.|..+++||
T Consensus 216 ~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 216 ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFVYVWD 294 (338)
T ss_pred cCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC-CCCccccccccceEEEee
Confidence 9999999999999999999999999999997543322211112222222234456778999 889999999999999999
Q ss_pred CC---------------cceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 516 GP---------------NVIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 516 ~~---------------~~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
.. +.+.|+|...+|.+++.|.+|++=.
T Consensus 295 ~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 295 TTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 54 4588999999999999999998743
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-31 Score=256.31 Aligned_cols=284 Identities=21% Similarity=0.397 Sum_probs=243.6
Q ss_pred HHHHHHhHHhhcccceeeecccCcceeeecCCC--ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEe
Q 005646 182 AERVKKRWFSRLRSLACVVDKQGEGERVRLNEE--DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFS 259 (686)
Q Consensus 182 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fs 259 (686)
.++....|..+...+.+...+...+.++-+.+. .+++++.|.+|++||+.+... ...++||...|.+|+|+
T Consensus 87 ~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-------e~~LrGHt~sv~di~~~ 159 (406)
T KOG0295|consen 87 SKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-------ERSLRGHTDSVFDISFD 159 (406)
T ss_pred CccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-------hhhhhccccceeEEEEe
Confidence 344456677776666666677777777666665 566777899999999876544 25688999999999999
Q ss_pred eCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCcc
Q 005646 260 PDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKV 339 (686)
Q Consensus 260 pdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (686)
..|++|||++.|=.+++||..+..
T Consensus 160 a~Gk~l~tcSsDl~~~LWd~~~~~-------------------------------------------------------- 183 (406)
T KOG0295|consen 160 ASGKYLATCSSDLSAKLWDFDTFF-------------------------------------------------------- 183 (406)
T ss_pred cCccEEEecCCccchhheeHHHHH--------------------------------------------------------
Confidence 999999999999999999987632
Q ss_pred ccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCC
Q 005646 340 FRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDG 417 (686)
Q Consensus 340 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg 417 (686)
..+..+.+|...|.++.|-|.| ++++++.|.+|+.|++.++-|+++|. |...|..++.+. |+.++++++.|.
T Consensus 184 -----~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dq 257 (406)
T KOG0295|consen 184 -----RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQ 257 (406)
T ss_pred -----HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCc
Confidence 2455667899999999999999 99999999999999999999999998 999999999998 999999999999
Q ss_pred cEEEEecCCCcEE-EEeccCCcEEEEEEccC---------------CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 418 KVRIWAVLSCHVV-DWVDIRQIVTAVCYRPD---------------GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 418 ~V~iwd~~~~~~~-~~~~~~~~V~~v~~spd---------------g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
+|++|-+.++++. .+..|..+|.+++|.|. ++++.+++.|++|++||+.++.+.+.
T Consensus 258 tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t-------- 329 (406)
T KOG0295|consen 258 TLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT-------- 329 (406)
T ss_pred eEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE--------
Confidence 9999999999766 56678889999999762 35899999999999999999987653
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc---------------eeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV---------------IGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~---------------~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
..+|...|.+++|+| .+++|+++..|+++++||..+. +.|..+..+++||+-|.++++|..
T Consensus 330 L~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 456889999999999 8999999999999999997643 456668889999999999999974
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=240.35 Aligned_cols=271 Identities=22% Similarity=0.361 Sum_probs=210.7
Q ss_pred CEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccc
Q 005646 263 QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRI 342 (686)
Q Consensus 263 ~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (686)
-+|+|+|.|.+||+|...+|.+...+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTi------------------------------------------------------ 36 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTI------------------------------------------------------ 36 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEE------------------------------------------------------
Confidence 48999999999999999999865544
Q ss_pred cCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCe--eeeEee-CCCCeEEEEEeecCCCEEEEEEcCCc
Q 005646 343 LEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGK 418 (686)
Q Consensus 343 ~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~--~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~ 418 (686)
+...+.|+.|...|++ .|++++ ...||+||++++. ++.+|. |...|+++.|.. +++.+++|+.||+
T Consensus 37 --------qh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt 106 (311)
T KOG0315|consen 37 --------QHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGT 106 (311)
T ss_pred --------ecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEee-cCeEEEecCCCce
Confidence 3345689999999999 555554 6789999999875 567776 999999999999 9999999999999
Q ss_pred EEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC
Q 005646 419 VRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (686)
Q Consensus 419 V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~ 498 (686)
++|||++...+...+.+..+|+++..+|+...|++|..+|.|++||+..+.+... ........|.++...|
T Consensus 107 ~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~-------liPe~~~~i~sl~v~~-- 177 (311)
T KOG0315|consen 107 VKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE-------LIPEDDTSIQSLTVMP-- 177 (311)
T ss_pred EEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc-------cCCCCCcceeeEEEcC--
Confidence 9999999988888899999999999999999999999999999999987643221 1112235688888888
Q ss_pred CCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCCcC
Q 005646 499 SSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKC 578 (686)
Q Consensus 499 ~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~ 578 (686)
||.+|+.+..-|+.++|++-+.... ...+++.
T Consensus 178 --------------------------dgsml~a~nnkG~cyvW~l~~~~~~--s~l~P~~-------------------- 209 (311)
T KOG0315|consen 178 --------------------------DGSMLAAANNKGNCYVWRLLNHQTA--SELEPVH-------------------- 209 (311)
T ss_pred --------------------------CCcEEEEecCCccEEEEEccCCCcc--ccceEhh--------------------
Confidence 9999999999999999999874411 1111221
Q ss_pred CCCCCCCcccccCCCCCccc--ccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccCc
Q 005646 579 GNAEKEPQLHVSDDDSPENL--AFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTT 656 (686)
Q Consensus 579 ~~~~~g~~l~~~~~~~~~~~--~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (686)
.+..|....+ .+||| +..+.+.++|+++++|+.++...+ .. ...++.++... .
T Consensus 210 ----------k~~ah~~~il~C~lSPd----~k~lat~ssdktv~iwn~~~~~kl-e~-----~l~gh~rWvWd-----c 264 (311)
T KOG0315|consen 210 ----------KFQAHNGHILRCLLSPD----VKYLATCSSDKTVKIWNTDDFFKL-EL-----VLTGHQRWVWD-----C 264 (311)
T ss_pred ----------heecccceEEEEEECCC----CcEEEeecCCceEEEEecCCceee-EE-----EeecCCceEEe-----e
Confidence 1233343433 46999 566778999999999998887311 11 12222233332 2
Q ss_pred cCCCCceEEEEecCCCeEeEEee
Q 005646 657 SSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 657 ~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
.++++|..||||+.|+++|+|..
T Consensus 265 ~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 265 AFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred eeccCccEEEecCCCCceeeccc
Confidence 37788999999999999999975
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=256.76 Aligned_cols=257 Identities=19% Similarity=0.399 Sum_probs=216.1
Q ss_pred cCcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecC
Q 005646 203 QGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 203 ~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~ 282 (686)
...+-++.++++.+++|..|++|+|||.... .....+.||++.|.|+.|. .+.|++|+.|.+|+|||++++
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~-------~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSL-------ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccH-------HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC
Confidence 3356678899999999999999999976533 3346688999999999995 569999999999999999998
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
+ ++.++-+|...|..+.|
T Consensus 268 e--------------------------------------------------------------~l~tlihHceaVLhlrf 285 (499)
T KOG0281|consen 268 E--------------------------------------------------------------PLNTLIHHCEAVLHLRF 285 (499)
T ss_pred c--------------------------------------------------------------hhhHHhhhcceeEEEEE
Confidence 7 45566789999999999
Q ss_pred eCCCEEEEEECCCcEEEEECCCCeee---eEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCC
Q 005646 363 SKNNYLLSASIDKTVRLWRVGNDHCL---RVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQ 437 (686)
Q Consensus 363 s~~~~L~s~s~Dg~V~iWd~~~~~~~---~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~ 437 (686)
+ +|+++++|.|.++.+||+....-+ +++. |...|+.+.| +.+++++++.|.+|++|++.+++.+ .+.+|+.
T Consensus 286 ~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf---d~kyIVsASgDRTikvW~~st~efvRtl~gHkR 361 (499)
T KOG0281|consen 286 S-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR 361 (499)
T ss_pred e-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc---ccceEEEecCCceEEEEeccceeeehhhhcccc
Confidence 6 469999999999999999876533 3333 9999999999 5579999999999999999999988 4557888
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
.|.|+.| .|+++++|+.|.+|++||+..+.+.. ...+|..-|.++.|.. +.+++|+.||+|+|||..
T Consensus 362 GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLR--------vLeGHEeLvRciRFd~---krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 362 GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR--------VLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred cceehhc--cCeEEEecCCCceEEEEeccccHHHH--------HHhchHHhhhheeecC---ceeeeccccceEEEEecc
Confidence 8877776 68899999999999999999987653 2455677799999955 899999999999999976
Q ss_pred ccee----------------------EcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 518 NVIG----------------------KYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 518 ~~~~----------------------~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..+. ..-|...|++.+.|.+|.|||+.++.
T Consensus 429 aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 429 AALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred cccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCC
Confidence 4321 11178889999999999999998876
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=237.08 Aligned_cols=209 Identities=26% Similarity=0.455 Sum_probs=169.9
Q ss_pred cCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeecccccee
Q 005646 242 KGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (686)
Q Consensus 242 ~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (686)
..+.+++|++.|+.++|+|- |..|||||.|+.||||+...+....
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~---------------------------------- 51 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWT---------------------------------- 51 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEE----------------------------------
Confidence 34678899999999999998 8899999999999999987532110
Q ss_pred EEEeeccCCceEEEeCCccccccCCCeEEe-ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCC--eeeeEee-CCC
Q 005646 321 LKSLRRTSESACVVFPPKVFRILEKPLHEF-HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND--HCLRVFP-HSN 395 (686)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~--~~~~~~~-h~~ 395 (686)
....+ .+|+..|..++|+|.| +|+++|.|.++.||.-..+ +|+.++. |.+
T Consensus 52 -------------------------ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn 106 (312)
T KOG0645|consen 52 -------------------------CKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN 106 (312)
T ss_pred -------------------------EEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc
Confidence 11111 3799999999999999 9999999999999987644 6788887 999
Q ss_pred CeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc---EE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCC-CCee
Q 005646 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH---VV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS-DNHL 470 (686)
Q Consensus 396 ~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~---~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~-~~~~ 470 (686)
.|.|++|++ ++++||+++.|..|-||.+.... +. .+..|...|..+.|+|....|++++.|++|++|+-. ....
T Consensus 107 EVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW 185 (312)
T KOG0645|consen 107 EVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDW 185 (312)
T ss_pred ceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCe
Confidence 999999999 99999999999999999998543 33 456788999999999999999999999999999876 4433
Q ss_pred eeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
... .....|...|.+++|.+ .|..|+++++|++|+||...
T Consensus 186 ~c~------~tl~g~~~TVW~~~F~~----------------------------~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 186 ECV------QTLDGHENTVWSLAFDN----------------------------IGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred eEE------EEecCccceEEEEEecC----------------------------CCceEEEecCCcceEeeeec
Confidence 322 22445667899999999 66667777777777777644
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=276.06 Aligned_cols=267 Identities=21% Similarity=0.388 Sum_probs=218.9
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.+..|+++|..+++++.++.+++|+...... ...+++.+|...|.+++|+|+|++|++++.|++|+|||+....
T Consensus 163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~- 236 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG- 236 (456)
T ss_pred EEEEEcCCCCeEEEccCCCcEEEeecccccc-----hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC-
Confidence 3468999999999999999999998844332 1234568899999999999999999999999999999994332
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
..++++.+|...|++++|+|
T Consensus 237 ------------------------------------------------------------~~~~~l~gH~~~v~~~~f~p 256 (456)
T KOG0266|consen 237 ------------------------------------------------------------RNLKTLKGHSTYVTSVAFSP 256 (456)
T ss_pred ------------------------------------------------------------eEEEEecCCCCceEEEEecC
Confidence 24677889999999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--EE-EEeccCC--
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VV-DWVDIRQ-- 437 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~--~~-~~~~~~~-- 437 (686)
++ ++++|+.|++|+|||+++++++..+. |.+.|++++|++ ++++|++++.|+.|+|||+.++. ++ ....+..
T Consensus 257 ~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 335 (456)
T KOG0266|consen 257 DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA 335 (456)
T ss_pred CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC
Confidence 99 99999999999999999999999999 999999999999 99999999999999999999999 33 3334433
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
+++.++|+|++.++++++.|+.+++||+.......... .+... ...+....+++ .+..+++++.|+.|++|+..
T Consensus 336 ~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~----~~~~~-~~~~~~~~~~~-~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 336 PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT----GHSNL-VRCIFSPTLST-GGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec----ccCCc-ceeEecccccC-CCCeEEEEeCCceEEEEeCC
Confidence 59999999999999999999999999999776543211 11111 12344455566 77888999999999999865
Q ss_pred cc----------------eeEcCCCCEEEEEe--CCCcEEEEeCC
Q 005646 518 NV----------------IGKYKDGKHIVSAG--EDSNVYMWNCI 544 (686)
Q Consensus 518 ~~----------------~~~~~dg~~l~sgs--~Dg~V~iWd~~ 544 (686)
+. +.+++..+++++++ .|+.|++|..+
T Consensus 410 s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 410 SGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 31 34566888888888 68889988764
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=262.36 Aligned_cols=416 Identities=18% Similarity=0.278 Sum_probs=289.6
Q ss_pred ccCcce--eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEe
Q 005646 202 KQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (686)
Q Consensus 202 ~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~ 279 (686)
|+..++ .|...|..+++|+.|+.|.|||+-.... ...++||+..|+.+-|..+.++|++.|.|+.|++||+
T Consensus 106 HK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G-------l~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL 178 (888)
T KOG0306|consen 106 HKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG-------LFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDL 178 (888)
T ss_pred cccceEEEEEcccCceEeecCCCccEEEEEecccee-------eEEeecchHHHhHHhccCCCeEEEEeccCceEEEEec
Confidence 555665 6667788999999999999999765433 2358899999999999998889999999999999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeec------CCCCcee--eeecccc--------------------ceeEEEeeccCCc-
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVN------HLSELKP--LFMDKEK--------------------ISILKSLRRTSES- 330 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~--------------------~~~~~~~~~~~~~- 330 (686)
.+..+....-.+......+.+..+ ....+.. +.+..+. ...+.......+.
T Consensus 179 ~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~ 258 (888)
T KOG0306|consen 179 ETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRF 258 (888)
T ss_pred ccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccE
Confidence 998887766655554443332220 0000000 0000000 0000000000000
Q ss_pred ------------------------------------------------------------------------------eE
Q 005646 331 ------------------------------------------------------------------------------AC 332 (686)
Q Consensus 331 ------------------------------------------------------------------------------~~ 332 (686)
..
T Consensus 259 ~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~l 338 (888)
T KOG0306|consen 259 LVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTL 338 (888)
T ss_pred EEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeE
Confidence 00
Q ss_pred EEeCCc---cccccC-CC---------eEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEE
Q 005646 333 VVFPPK---VFRILE-KP---------LHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTC 399 (686)
Q Consensus 333 ~~~~~~---~~~~~~-~~---------~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~ 399 (686)
+..... .+.+.. .. ..++.||...|.+++++.+..++.++..+.|++|+..+.+|++++... ++.|
T Consensus 339 v~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~ 417 (888)
T KOG0306|consen 339 VLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILA 417 (888)
T ss_pred EEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEE
Confidence 000000 000000 11 145679999999999999995555555789999999999999999865 9999
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee---ee
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD---AE 475 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~---~~ 475 (686)
..|.| .++++++|...|.+.+||+.....+. ...|.+.|..++.+||++.+++|+.|.+|++||..--.-... ..
T Consensus 418 ~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ 496 (888)
T KOG0306|consen 418 SKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKV 496 (888)
T ss_pred EEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccccee
Confidence 99999 99999999999999999999988874 446899999999999999999999999999999641111000 00
Q ss_pred EEeec-cccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------cceeEcCCCCEEEEEeCCCcEE
Q 005646 476 ICVHS-KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP---------------NVIGKYKDGKHIVSAGEDSNVY 539 (686)
Q Consensus 476 ~~~~~-~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~---------------~~~~~~~dg~~l~sgs~Dg~V~ 539 (686)
+.+.. ....-...|.++.++| ++.+|+++--|++++||-+. .++..+||++.|+|||.|.+|+
T Consensus 497 lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVK 575 (888)
T KOG0306|consen 497 LSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVK 575 (888)
T ss_pred eeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceE
Confidence 11111 1112246799999999 89999999999999999643 3477889999999999999999
Q ss_pred EEeCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCC
Q 005646 540 MWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKG 619 (686)
Q Consensus 540 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~ 619 (686)
||-++=|... +++-.+ ..+...+.|-|+ ...|++.+-|+.
T Consensus 576 iWGLdFGDCH--------KS~fAH----------------------------dDSvm~V~F~P~----~~~FFt~gKD~k 615 (888)
T KOG0306|consen 576 IWGLDFGDCH--------KSFFAH----------------------------DDSVMSVQFLPK----THLFFTCGKDGK 615 (888)
T ss_pred Eeccccchhh--------hhhhcc----------------------------cCceeEEEEccc----ceeEEEecCcce
Confidence 9999887621 111000 112234467776 678899999999
Q ss_pred CCCCCCCcCCCccccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 620 CATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 620 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
++-|+.++......+. + ++ ..+ -|.++ .+.|.++||+|.|-.||+|.-
T Consensus 616 vKqWDg~kFe~iq~L~---~---H~-~ev--~cLav---~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 616 VKQWDGEKFEEIQKLD---G---HH-SEV--WCLAV---SPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred EEeechhhhhhheeec---c---ch-hee--eeeEE---cCCCCeEEeccCCceeEeeec
Confidence 9999988887544431 1 11 111 14433 455999999999999999975
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=247.53 Aligned_cols=230 Identities=19% Similarity=0.408 Sum_probs=199.9
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+.+++|.+.|.|+++.|..++++||+.|++|+|||+.++++
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L--------------------------------------- 185 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL--------------------------------------- 185 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE---------------------------------------
Confidence 56889999999999999999999999999999999999873
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~ 401 (686)
..++.||...|..+++|+-. +|++++.|+.|+-||+...+.++.+. |-..|.|++
T Consensus 186 -----------------------kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~ 242 (460)
T KOG0285|consen 186 -----------------------KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLD 242 (460)
T ss_pred -----------------------EEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEe
Confidence 45667899999999999988 99999999999999999999999887 999999999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeec
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~ 480 (686)
.+| .-+.|++|+.|.++|+||+++...+ .+.+|..+|..+.+.|-...+++|+.|++|++||+..++-...
T Consensus 243 lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~t------- 314 (460)
T KOG0285|consen 243 LHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMIT------- 314 (460)
T ss_pred ccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEe-------
Confidence 999 8899999999999999999998766 5667999999999999888899999999999999998874321
Q ss_pred cccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc---------------eeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV---------------IGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 481 ~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~---------------~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
...|...+.+++.+| ....+++++.| .|+-|+.+.. +... ...++++|++.|.+.+||..+
T Consensus 315 -lt~hkksvral~lhP-~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~n-sD~v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 315 -LTHHKKSVRALCLHP-KENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVN-SDGVLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred -eecccceeeEEecCC-chhhhhccCCc-cceeccCCccchhhccccccceeeeeeec-cCceEEEcCCceEEEEEecCc
Confidence 234667899999999 66677777666 5778876532 2222 456889999999999999998
Q ss_pred CC
Q 005646 546 HE 547 (686)
Q Consensus 546 ~~ 547 (686)
+.
T Consensus 391 g~ 392 (460)
T KOG0285|consen 391 GH 392 (460)
T ss_pred Cc
Confidence 76
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=231.25 Aligned_cols=228 Identities=27% Similarity=0.475 Sum_probs=199.2
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
..+..|+++|..+.|+-||+|.+|+|.|++|++|+...+.
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~---------------------------------------- 50 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA---------------------------------------- 50 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc----------------------------------------
Confidence 4577899999999999999999999999999999987765
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~ 401 (686)
.++++.+|..+|.+++.+.++ .+++|+.|+.|.+||+.+|+.++.|. |.+.|+.++
T Consensus 51 ----------------------liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~ 108 (307)
T KOG0316|consen 51 ----------------------LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVR 108 (307)
T ss_pred ----------------------eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEE
Confidence 467778999999999999998 99999999999999999999999998 999999999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCc--EEE-EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCH--VVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~--~~~-~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
|+. +...+++|+.|.+||+||.++.. .++ +......|.++..+ +..|++|+.||++|.||++.+.+..
T Consensus 109 fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~s------ 179 (307)
T KOG0316|consen 109 FNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSS------ 179 (307)
T ss_pred ecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeeh------
Confidence 998 89999999999999999998764 333 33456778888775 5689999999999999999887642
Q ss_pred eccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-----------------eeEcCCCCEEEEEeCCCcEEEE
Q 005646 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-----------------IGKYKDGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~-----------------~~~~~dg~~l~sgs~Dg~V~iW 541 (686)
..-..+|+++.|++ +++.+++++-|+++|+.|-.+. .++.....++++|++||.|++|
T Consensus 180 ----Dy~g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 180 ----DYFGHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFW 254 (307)
T ss_pred ----hhcCCcceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEE
Confidence 22346799999999 8999999999999999996542 3455577899999999999999
Q ss_pred eCCCCC
Q 005646 542 NCIGHE 547 (686)
Q Consensus 542 d~~~~~ 547 (686)
|+.+..
T Consensus 255 dLvd~~ 260 (307)
T KOG0316|consen 255 DLVDET 260 (307)
T ss_pred Eeccce
Confidence 998865
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-29 Score=289.34 Aligned_cols=259 Identities=19% Similarity=0.343 Sum_probs=205.3
Q ss_pred cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEe
Q 005646 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFT 301 (686)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~ 301 (686)
+|.+++|+...... ........+..|.+.|++++|+|+|++|||||.|+.|+||++........ ..
T Consensus 457 ~gl~~~~~~~~~~~--~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-~~----------- 522 (793)
T PLN00181 457 EGLCKYLSFSKLRV--KADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-DI----------- 522 (793)
T ss_pred hhhhhhhcccceEE--EEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-cc-----------
Confidence 56678887654322 22233345677999999999999999999999999999999754210000 00
Q ss_pred ecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC-C-EEEEEECCCcEEE
Q 005646 302 VNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN-N-YLLSASIDKTVRL 379 (686)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~-~-~L~s~s~Dg~V~i 379 (686)
..+...+. +...|.+++|++. + +|++++.|++|++
T Consensus 523 ------------------------------------------~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 523 ------------------------------------------HYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred ------------------------------------------ccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 01222233 3457899999885 4 9999999999999
Q ss_pred EECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEc-cCCCEEEEEecC
Q 005646 380 WRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYR-PDGQGGIVGSMM 457 (686)
Q Consensus 380 Wd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~s-pdg~~l~~gs~d 457 (686)
||+.+++.+..+. |...|++++|+|.++.+|++|+.||+|++||++++..+....+...+.++.|+ ++|.+|++|+.|
T Consensus 560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSAD 639 (793)
T ss_pred EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCC
Confidence 9999999888887 99999999999867899999999999999999999887666667789999995 579999999999
Q ss_pred CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC--------------------
Q 005646 458 GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-------------------- 517 (686)
Q Consensus 458 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~-------------------- 517 (686)
|.|++||+++.+.... ...+|...|+.+.|. ++..+++++.|+.|++||..
T Consensus 640 g~I~iwD~~~~~~~~~-------~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~ 710 (793)
T PLN00181 640 HKVYYYDLRNPKLPLC-------TMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV 710 (793)
T ss_pred CeEEEEECCCCCccce-------EecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC
Confidence 9999999986542110 123577889999996 46789999999999999964
Q ss_pred -cceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 518 -NVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 518 -~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
+.+++++++++|++|+.|+.|+||+...+
T Consensus 711 i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 711 KNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred eeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 12567889999999999999999997654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-30 Score=246.06 Aligned_cols=264 Identities=18% Similarity=0.282 Sum_probs=226.3
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|.+-+ .++.+...++++|+.|++|+|||+..... ..++.||...|..+++|+--.||++++.|+.|+.||
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-------kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-------KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE-------EEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 444444 45556668999999999999999876543 346889999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+...+ .++.+.||-..|.
T Consensus 222 Le~nk--------------------------------------------------------------vIR~YhGHlS~V~ 239 (460)
T KOG0285|consen 222 LEYNK--------------------------------------------------------------VIRHYHGHLSGVY 239 (460)
T ss_pred chhhh--------------------------------------------------------------hHHHhccccceeE
Confidence 98765 4667789999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEecc
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDI 435 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~ 435 (686)
+|+.+|.- .|++|+.|.++||||+++...+.++. |..+|..+.+.| .+..+++|+.|++|++||++.++.. ....|
T Consensus 240 ~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~h 318 (460)
T KOG0285|consen 240 CLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHH 318 (460)
T ss_pred EEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecc
Confidence 99999987 99999999999999999999999998 999999999999 6778999999999999999998865 67778
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
+..|.+++.+|....+|+++.| .|+-|++..+..... ...|..-|+.+.... ...+++|+..|.|.+||
T Consensus 319 kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n--------lsgh~~iintl~~ns--D~v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 319 KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN--------LSGHNAIINTLSVNS--DGVLVSGGDNGSIMFWD 387 (460)
T ss_pred cceeeEEecCCchhhhhccCCc-cceeccCCccchhhc--------cccccceeeeeeecc--CceEEEcCCceEEEEEe
Confidence 8999999999999999988776 599999988765432 345667788888876 36899999999999999
Q ss_pred CCc-----------------------ceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 516 GPN-----------------------VIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 516 ~~~-----------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
..+ ..+|.+.|..|+||..|.+|++|.-+.
T Consensus 388 wksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 388 WKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 543 245666899999999999999998655
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=255.89 Aligned_cols=261 Identities=21% Similarity=0.310 Sum_probs=224.5
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
...+.|...+++++-.+|.|.||+++++.. .+.+.--..+|++.+|-+-.+++++|+.|..||||+..+++
T Consensus 18 sVd~HPtePw~la~LynG~V~IWnyetqtm-------VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e-- 88 (794)
T KOG0276|consen 18 SVDFHPTEPWILAALYNGDVQIWNYETQTM-------VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE-- 88 (794)
T ss_pred eeecCCCCceEEEeeecCeeEEEeccccee-------eeeeeecccchhhheeeeccceEEEecCCceEEEEecccce--
Confidence 356677778999999999999999987654 34466678899999999999999999999999999999886
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
.++.|.+|.+.|.+++.+|.
T Consensus 89 ------------------------------------------------------------kV~~FeAH~DyIR~iavHPt 108 (794)
T KOG0276|consen 89 ------------------------------------------------------------KVKTFEAHSDYIRSIAVHPT 108 (794)
T ss_pred ------------------------------------------------------------eeEEeeccccceeeeeecCC
Confidence 46778899999999999999
Q ss_pred C-EEEEEECCCcEEEEECCCC-eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEE
Q 005646 366 N-YLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTA 441 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~-~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~ 441 (686)
. +++|+|.|-+|++||.+.. .|.++|. |..+|.+++|+|.|.+.|++++.|++|++|.+....+. ++.+|...|++
T Consensus 109 ~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~ 188 (794)
T KOG0276|consen 109 LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNC 188 (794)
T ss_pred CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcce
Confidence 9 9999999999999999866 6888888 99999999999999999999999999999999887655 67789999999
Q ss_pred EEEccCC--CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc
Q 005646 442 VCYRPDG--QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (686)
Q Consensus 442 v~~spdg--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~ 519 (686)
++|-+-| .+|++|+.|.+++|||..+..+.+. ..+|...|..+.|+| .-.++++|+.||++|||+..+.
T Consensus 189 Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T--------LeGHt~Nvs~v~fhp-~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 189 VDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT--------LEGHTNNVSFVFFHP-ELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred EEeccCCCcceEEecCCCceEEEeecchHHHHHH--------hhcccccceEEEecC-CCcEEEEecCCccEEEecCcce
Confidence 9998844 6999999999999999998876542 456778899999999 7889999999999999986542
Q ss_pred ---------------eeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 520 ---------------IGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 520 ---------------~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
++..+.++.++.|.+.|.|.| ++-.
T Consensus 260 ~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgr 299 (794)
T KOG0276|consen 260 KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGR 299 (794)
T ss_pred ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccC
Confidence 445567777888887776654 4433
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-29 Score=261.12 Aligned_cols=430 Identities=18% Similarity=0.240 Sum_probs=290.8
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
..++.+|+.|++...+. |.+-|.......+. ..-..-...|++++..||+++|++++..+.+++|++.+++.+.
T Consensus 25 ~~~s~nG~~L~t~~~d~-Vi~idv~t~~~~l~-----s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~ir 98 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDR-VIIIDVATGSIALP-----SGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIR 98 (775)
T ss_pred eeECCCCCEEEEecCce-EEEEEccCCceecc-----cCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhH
Confidence 67889999988877654 44555544332111 1112345689999999999999999999999999999999998
Q ss_pred eecc-CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 287 EVDI-PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 287 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
.++. ++.++..+.|.+.. ..... ++.+....+|+... +...+.|+||.+.|..+.|+|+
T Consensus 99 swKa~He~Pvi~ma~~~~g---~LlAt-------------ggaD~~v~VWdi~~----~~~th~fkG~gGvVssl~F~~~ 158 (775)
T KOG0319|consen 99 SWKAIHEAPVITMAFDPTG---TLLAT-------------GGADGRVKVWDIKN----GYCTHSFKGHGGVVSSLLFHPH 158 (775)
T ss_pred hHhhccCCCeEEEEEcCCC---ceEEe-------------ccccceEEEEEeeC----CEEEEEecCCCceEEEEEeCCc
Confidence 8887 55444444443322 11111 22233333333321 2578999999999999999998
Q ss_pred C---EEEEEECCCcEEEEECCCCe-eeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEE
Q 005646 366 N---YLLSASIDKTVRLWRVGNDH-CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT 440 (686)
Q Consensus 366 ~---~L~s~s~Dg~V~iWd~~~~~-~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~ 440 (686)
- .|++|..|++|++||+.... |+.++. |.+.|++++|.+ ++..+++++.|..+.|||+.+.+..........+.
T Consensus 159 ~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~-d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E 237 (775)
T KOG0319|consen 159 WNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE-DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLE 237 (775)
T ss_pred cchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc-CCceEEEeccCcEEEEeehhhhhhhheechhhhee
Confidence 6 78999999999999999554 566666 999999999999 89999999999999999998888888888888899
Q ss_pred EEEEccC-----CCEEEEEecCCcEEEEeCCCCeeeeee-----------------------------------eEEeec
Q 005646 441 AVCYRPD-----GQGGIVGSMMGDCRFYNVSDNHLELDA-----------------------------------EICVHS 480 (686)
Q Consensus 441 ~v~~spd-----g~~l~~gs~dg~i~iwd~~~~~~~~~~-----------------------------------~~~~~~ 480 (686)
++.+-++ |.++++.+.+|.+++||..++++.... .+.+..
T Consensus 238 ~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k 317 (775)
T KOG0319|consen 238 SVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVK 317 (775)
T ss_pred eEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEeh
Confidence 9999887 779999999999999998765432110 111111
Q ss_pred cccCCCCCeEEEEEeCCCCC-----------------------------------------eEEEEeCCCcEEEEeCC--
Q 005646 481 KKKAPCKRITGFQFLPQDSS-----------------------------------------KVMVSCADSQVRILQGP-- 517 (686)
Q Consensus 481 ~~~~~~~~I~~l~fsp~~~~-----------------------------------------~l~~~s~D~~I~iwd~~-- 517 (686)
...+....|.++.|...+.+ +|++++.|.++++|...
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~ 397 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN 397 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC
Confidence 12223344555554433334 45555555555555321
Q ss_pred -----------------cceeEcC-CCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccc-cccC-CcEEEecCCCC-
Q 005646 518 -----------------NVIGKYK-DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLE-RFTT-NASIAIPWCGL- 576 (686)
Q Consensus 518 -----------------~~~~~~~-dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~-~~~~-~~~v~~s~~g~- 576 (686)
..++++. ...+|+++|.|+++++|++...++.........+.-+ .+.. ...++++++-.
T Consensus 398 ~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkL 477 (775)
T KOG0319|consen 398 CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKL 477 (775)
T ss_pred cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCce
Confidence 1122222 2356666677777777766653221111111111111 1222 45666666522
Q ss_pred ----------cCCCCCCCCcccccCCCCCcc--cccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchhh
Q 005646 577 ----------KCGNAEKEPQLHVSDDDSPEN--LAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQ 644 (686)
Q Consensus 577 ----------~~~~~~~g~~l~~~~~~~~~~--~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~ 644 (686)
++|+.+....+.++.+|...+ +.|+|. .+.+.+.|+|+++++|+.++...+.++. ++..+
T Consensus 478 iAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~----dq~laT~SgD~TvKIW~is~fSClkT~e---GH~~a- 549 (775)
T KOG0319|consen 478 IATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN----DQLLATCSGDKTVKIWSISTFSCLKTFE---GHTSA- 549 (775)
T ss_pred EEecccccceeeecccCceEEEEeeCCccceEEEEeccc----cceeEeccCCceEEEEEeccceeeeeec---Cccce-
Confidence 699999999999999998665 467886 4566689999999999999888766652 11111
Q ss_pred HHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 645 YKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 645 ~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
... +.+-..|..|++||.||-||+|..
T Consensus 550 -------Vlr-a~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 550 -------VLR-ASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred -------eEe-eeeeeCCcEEEeccCCCcEEEEec
Confidence 111 234556999999999999999974
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-29 Score=270.60 Aligned_cols=291 Identities=29% Similarity=0.457 Sum_probs=223.2
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
|...|.++.|+++|++|++++.|+.+++|+......
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------------------------- 193 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------------------------- 193 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------------------------------
Confidence 478999999999999999999999999999855431
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEEC-CCCeeeeEee-CCCCeEEEEEeec
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRV-GNDHCLRVFP-HSNYVTCVHFNPV 405 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~-~~~~~~~~~~-h~~~V~~v~fsp~ 405 (686)
...+.+.+|...|.+++|+|++ ++++++.|++|+|||+ ..+.+++++. |..+|++++|+|
T Consensus 194 ----------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p- 256 (456)
T KOG0266|consen 194 ----------------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP- 256 (456)
T ss_pred ----------------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-
Confidence 0234457899999999999999 9999999999999999 5668999997 999999999999
Q ss_pred CCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccC
Q 005646 406 DDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (686)
Q Consensus 406 ~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 484 (686)
.++++++|+.|++|||||+++++++ .+..|...|++++|+++|++|++++.||.|+|||+.++.... .........
T Consensus 257 ~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~~~~~~ 333 (456)
T KOG0266|consen 257 DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLC---LKLLSGAEN 333 (456)
T ss_pred CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceee---eecccCCCC
Confidence 7799999999999999999998887 566788999999999999999999999999999999887430 001111122
Q ss_pred CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCcccccccccccccc
Q 005646 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFT 564 (686)
Q Consensus 485 ~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~ 564 (686)
.. .++.++|+| ++++|++++.|+.+++||+..+... ..+..+.
T Consensus 334 ~~-~~~~~~fsp----------------------------~~~~ll~~~~d~~~~~w~l~~~~~~--------~~~~~~~ 376 (456)
T KOG0266|consen 334 SA-PVTSVQFSP----------------------------NGKYLLSASLDRTLKLWDLRSGKSV--------GTYTGHS 376 (456)
T ss_pred CC-ceeEEEECC----------------------------CCcEEEEecCCCeEEEEEccCCcce--------eeecccC
Confidence 22 689999999 9999999999999999999987622 1111111
Q ss_pred CCcEEEecCCCCcCCCCCCCCcccccCCCCCccc-ccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchh
Q 005646 565 TNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENL-AFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKS 643 (686)
Q Consensus 565 ~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~-~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~ 643 (686)
. ... .|++.....+.++++.+.|..+..|+.+.......+. +....
T Consensus 377 ~------------------------------~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~---~h~~~ 423 (456)
T KOG0266|consen 377 N------------------------------LVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE---GHSKA 423 (456)
T ss_pred C------------------------------cceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc---CCCCC
Confidence 1 001 1233333447788889999999999977644322221 00000
Q ss_pred hHHhhhcccccCccCCCCceEEEEec--CCCeEeEEeecC
Q 005646 644 QYKFLKSSCLCTTSSHAWGLVIVTAG--WDGRIRSFLNYG 681 (686)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~g~~ivT~~--~DG~Ir~w~~~g 681 (686)
.......|+...+|++++ .|+.||+|..-+
T Consensus 424 --------~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 424 --------AVSDLSSHPTENLIASSSFEGDGLIRLWKYDF 455 (456)
T ss_pred --------ceeccccCCCcCeeeecCcCCCceEEEecCCC
Confidence 111123455578999998 799999998643
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=241.92 Aligned_cols=306 Identities=15% Similarity=0.191 Sum_probs=246.6
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+.|..|+.+|.+++.+|+.++++|||.|....||++.++.
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge---------------------------------------- 97 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE---------------------------------------- 97 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc----------------------------------------
Confidence 4577899999999999999999999999999999998876
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~ 401 (686)
...++.+|...|+++.|+.+| +||||.++|.|+||+..++.....+. .-..+.-+.
T Consensus 98 ----------------------~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~ 155 (399)
T KOG0296|consen 98 ----------------------FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLK 155 (399)
T ss_pred ----------------------ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEE
Confidence 345667899999999999999 99999999999999999999888876 667888999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCC-CcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeec
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLS-CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~ 480 (686)
|+| ...+|+.|+.||.|.+|.+.+ +.+..+.+|..++++-.|.|||+.++++..||+|++||+.++.+....
T Consensus 156 WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~------ 228 (399)
T KOG0296|consen 156 WHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKI------ 228 (399)
T ss_pred ecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEe------
Confidence 999 999999999999999999999 555677789999999999999999999999999999999998754322
Q ss_pred cccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc--------------------------eeEcCCCCEEEEEeC
Q 005646 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV--------------------------IGKYKDGKHIVSAGE 534 (686)
Q Consensus 481 ~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~--------------------------~~~~~dg~~l~sgs~ 534 (686)
........+++.++. .+..++.+..++.+++.+..+. +.++..=.+.|+|+-
T Consensus 229 -~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~v 306 (399)
T KOG0296|consen 229 -TQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSV 306 (399)
T ss_pred -cccccCcCCcccccc-ccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccc
Confidence 222234567777777 7788888888888887764322 223336678999999
Q ss_pred CCcEEEEeCCCCCCCCcc-ccccccccccccCCcEEEecCCCC-cCCCCCCCCcccccCCCCCccccc--CCCccccCcc
Q 005646 535 DSNVYMWNCIGHEEPAHD-QAKTIRSLERFTTNASIAIPWCGL-KCGNAEKEPQLHVSDDDSPENLAF--APARFSLGQE 610 (686)
Q Consensus 535 Dg~V~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~s~~g~-~~~~~~~g~~l~~~~~~~~~~~~~--spd~~~~~~~ 610 (686)
||+|.|||+......... +...+..+.-..+....+-.-+|. +.||..+|+.+....+|...++.| +|+ ...
T Consensus 307 dG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~----~~~ 382 (399)
T KOG0296|consen 307 DGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQ----KRL 382 (399)
T ss_pred cceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCC----CcE
Confidence 999999999876522211 122233332222233444444554 799999999999999999888866 887 778
Q ss_pred ccccCCCCCCCCCC
Q 005646 611 YVFESFPKGCATWP 624 (686)
Q Consensus 611 ~~~~s~d~~~~~W~ 624 (686)
+++.+.|+++++..
T Consensus 383 vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 383 VVTVSDDNTALVFE 396 (399)
T ss_pred EEEecCCCeEEEEe
Confidence 88999999887765
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=286.43 Aligned_cols=270 Identities=15% Similarity=0.228 Sum_probs=216.3
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccc-cccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSA-LYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~-~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.+|+++++++++|+.|+.|+||+.......... .+....+. +...|.+++|++ ++.+||+++.||+|+|||+.+++
T Consensus 489 i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~- 566 (793)
T PLN00181 489 IGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ- 566 (793)
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-
Confidence 456678889999999999999997542111100 01112233 456899999987 47899999999999999998765
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
.+..+.+|.+.|++++|+|
T Consensus 567 -------------------------------------------------------------~~~~~~~H~~~V~~l~~~p 585 (793)
T PLN00181 567 -------------------------------------------------------------LVTEMKEHEKRVWSIDYSS 585 (793)
T ss_pred -------------------------------------------------------------EEEEecCCCCCEEEEEEcC
Confidence 3445668999999999997
Q ss_pred -CC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--EEEEeccCCcEE
Q 005646 365 -NN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWVDIRQIVT 440 (686)
Q Consensus 365 -~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~~~~V~ 440 (686)
++ +|++|+.|++|++||+.++.++..+.+...|.++.|++.++.+|++|+.||.|++||+++.. ...+..|...|+
T Consensus 586 ~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~ 665 (793)
T PLN00181 586 ADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS 665 (793)
T ss_pred CCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEE
Confidence 55 99999999999999999999998888778899999976589999999999999999998765 345668889999
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP--- 517 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~--- 517 (686)
++.|. ++.+|++++.|++|++||+......... .......+|...+..+.|+| ++.+|++++.|+.|++|+..
T Consensus 666 ~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~--~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 666 YVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINE--TPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred EEEEe-CCCEEEEEECCCEEEEEeCCCCccccCC--cceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCC
Confidence 99997 7889999999999999999753211000 00112345677899999999 67899999999999999842
Q ss_pred -------------------------cceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 518 -------------------------NVIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 518 -------------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
..++|++++.+|++|+.||.|+||++
T Consensus 742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 23678899999999999999999996
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-30 Score=270.66 Aligned_cols=200 Identities=26% Similarity=0.486 Sum_probs=183.1
Q ss_pred eecccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 005646 199 VVDKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (686)
Q Consensus 199 ~~~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~v 276 (686)
...|.+.| ++|+++.++|++++.|.+|++|.+..... ...++||..+|+++.|+|.|-|+||||.|++.++
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~-------~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC-------LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARL 519 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeeccccee-------EEEecCCCcceeeEEecCCceEEEecCCCceeee
Confidence 45677766 77888899999999999999998766543 3457899999999999999999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
|..... +|++.+.||.+.
T Consensus 520 Ws~d~~--------------------------------------------------------------~PlRifaghlsD 537 (707)
T KOG0263|consen 520 WSTDHN--------------------------------------------------------------KPLRIFAGHLSD 537 (707)
T ss_pred eecccC--------------------------------------------------------------Cchhhhcccccc
Confidence 987653 477888999999
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEe
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWV 433 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~ 433 (686)
|.|++|+|+. ++++||.|++||+||+.+|..++.|. |.++|++++|+| +|.+|++|+.||.|.|||+.++..+ .+.
T Consensus 538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~ 616 (707)
T KOG0263|consen 538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLANGSLVKQLK 616 (707)
T ss_pred cceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCCCcchhhhh
Confidence 9999999999 99999999999999999999999998 999999999999 9999999999999999999998776 778
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCC
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~ 468 (686)
+|.+.|.++.|+.||..||+|+.|.+|++||+...
T Consensus 617 ~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 617 GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 89999999999999999999999999999998653
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=245.21 Aligned_cols=274 Identities=19% Similarity=0.290 Sum_probs=221.5
Q ss_pred cccCcc--eeeecCCC-ccceeeccceEEEEEcCCc-ccccc--ccccCceecc----cCCceEEEEEeeCCCEEEEEeC
Q 005646 201 DKQGEG--ERVRLNEE-DAMFCSKVQRVKVYHCKKR-SKELS--ALYKGQEIQA----HDGSILTMKFSPDGQYLASAGD 270 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~-~l~~g~~d~~v~vw~~~~~-~~~~~--~~~~~~~l~~----H~~~I~~l~fspdg~~Lasgs~ 270 (686)
.|..++ +++++..+ .+++|+.+-..++|++... ..... .+.....+-+ -...|++++|+.+|.+||||+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 345555 44555555 7889999999999998641 11111 1111111112 2357999999999999999999
Q ss_pred CCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe
Q 005646 271 DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (686)
Q Consensus 271 Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (686)
||.++||+.... .+.+|
T Consensus 256 ~G~~riw~~~G~---------------------------------------------------------------l~~tl 272 (524)
T KOG0273|consen 256 DGEARIWNKDGN---------------------------------------------------------------LISTL 272 (524)
T ss_pred CcEEEEEecCch---------------------------------------------------------------hhhhh
Confidence 999999997543 34556
Q ss_pred ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 351 ~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
..|.++|.+|.|+..| +|++++.|+++.|||..++.+.+.|. |..+-..|.|- +..-|++++.|+.|+++.+....
T Consensus 273 ~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~ 350 (524)
T KOG0273|consen 273 GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDR 350 (524)
T ss_pred hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCCC
Confidence 6799999999999999 99999999999999999999999998 77776788886 57789999999999999997655
Q ss_pred E-EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC--------CC
Q 005646 429 V-VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ--------DS 499 (686)
Q Consensus 429 ~-~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~--------~~ 499 (686)
. ..+.+|++.|.++.|.|.|..|++++.|++++||++....... ....|...|+.+.|+|. .+
T Consensus 351 P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~--------~l~~Hskei~t~~wsp~g~v~~n~~~~ 422 (524)
T KOG0273|consen 351 PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH--------DLQAHSKEIYTIKWSPTGPVTSNPNMN 422 (524)
T ss_pred cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh--------hhhhhccceeeEeecCCCCccCCCcCC
Confidence 4 4788899999999999999999999999999999986654322 24567788999999884 34
Q ss_pred CeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 500 SKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 500 ~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..+++++.|++|++||... .++|+|+|+|||+|+.||.|.||+..+++
T Consensus 423 ~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 423 LMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred ceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence 5899999999999999653 36789999999999999999999999876
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-28 Score=252.74 Aligned_cols=374 Identities=17% Similarity=0.258 Sum_probs=275.1
Q ss_pred cceeeecCCC--ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecC
Q 005646 205 EGERVRLNEE--DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 205 ~~~~~s~~~~--~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~ 282 (686)
++++....++ .+|.|..||.|+||+...... .-++.||+.+|++|.|...|..|||||.|+.|.+||+...
T Consensus 67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~-------~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E 139 (888)
T KOG0306|consen 67 EVTCLRSSDDILLLAVGYADGSVQIFSLESEEI-------LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE 139 (888)
T ss_pred eEEEeeccCCcceEEEEecCceEEeeccCCCce-------eeeecccccceEEEEEcccCceEeecCCCccEEEEEeccc
Confidence 4555554444 569999999999998764422 2457889999999999999999999999999999998653
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
. -...++||...|+.+-|
T Consensus 140 ~--------------------------------------------------------------Gl~rL~GHkd~iT~~~F 157 (888)
T KOG0306|consen 140 E--------------------------------------------------------------GLFRLRGHKDSITQALF 157 (888)
T ss_pred e--------------------------------------------------------------eeEEeecchHHHhHHhc
Confidence 2 34667899999999999
Q ss_pred eCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC--------------
Q 005646 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-------------- 426 (686)
Q Consensus 363 s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-------------- 426 (686)
..+. +|++.+.|++|++||+.+..|..+.- |.+.|+.+++.+ +.+++++.|+.+++|++..
T Consensus 158 ~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~ 234 (888)
T KOG0306|consen 158 LNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTK 234 (888)
T ss_pred cCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceee
Confidence 8855 99999999999999999999998877 999999999975 8899999999999998810
Q ss_pred --------------------------------------------------------------------------------
Q 005646 427 -------------------------------------------------------------------------------- 426 (686)
Q Consensus 427 -------------------------------------------------------------------------------- 426 (686)
T Consensus 235 ~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~ 314 (888)
T KOG0306|consen 235 LRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRL 314 (888)
T ss_pred ccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHH
Confidence
Q ss_pred ------------------C-c------------------------------EEEEeccCCcEEEEEEccCCCEEEEEecC
Q 005646 427 ------------------C-H------------------------------VVDWVDIRQIVTAVCYRPDGQGGIVGSMM 457 (686)
Q Consensus 427 ------------------~-~------------------------------~~~~~~~~~~V~~v~~spdg~~l~~gs~d 457 (686)
+ . .+...+|+..|.+++++.+...+++| ..
T Consensus 315 ~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~ 393 (888)
T KOG0306|consen 315 ETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AG 393 (888)
T ss_pred HheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-CC
Confidence 0 0 01122455668889999887666665 56
Q ss_pred CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeE
Q 005646 458 GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGK 522 (686)
Q Consensus 458 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~ 522 (686)
+.++||+..+.++.... ....+.+..|.| +..++++|...|.+.++|... .++.
T Consensus 394 ~SikiWn~~t~kciRTi----------~~~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~ 462 (888)
T KOG0306|consen 394 ESIKIWNRDTLKCIRTI----------TCGYILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISL 462 (888)
T ss_pred CcEEEEEccCcceeEEe----------ccccEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeee
Confidence 78999999988776432 224688999999 789999999999999999653 2678
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCCC-----CccccccccccccccCCcEEEecCCCCc----CCC-------CCCCCc
Q 005646 523 YKDGKHIVSAGEDSNVYMWNCIGHEEP-----AHDQAKTIRSLERFTTNASIAIPWCGLK----CGN-------AEKEPQ 586 (686)
Q Consensus 523 ~~dg~~l~sgs~Dg~V~iWd~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~s~~g~~----~~~-------~~~g~~ 586 (686)
.||++.++|||.|.+|++|++.--... .....+..++++--.....+.++++|.- .-| ..+=..
T Consensus 463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF 542 (888)
T KOG0306|consen 463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF 542 (888)
T ss_pred cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee
Confidence 899999999999999999998643320 1122233445544444678888888762 111 111122
Q ss_pred ccccCCCCCcccc--cCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccCccCCCCceE
Q 005646 587 LHVSDDDSPENLA--FAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLV 664 (686)
Q Consensus 587 l~~~~~~~~~~~~--~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 664 (686)
...+=+|.-++++ .||| +..++++++|+++++|-..-..+-.++. ++. ....++ .+-+....
T Consensus 543 flsLYGHkLPV~smDIS~D----SklivTgSADKnVKiWGLdFGDCHKS~f---AHd--------DSvm~V-~F~P~~~~ 606 (888)
T KOG0306|consen 543 FLSLYGHKLPVLSMDISPD----SKLIVTGSADKNVKIWGLDFGDCHKSFF---AHD--------DSVMSV-QFLPKTHL 606 (888)
T ss_pred eeeecccccceeEEeccCC----cCeEEeccCCCceEEeccccchhhhhhh---ccc--------CceeEE-EEccccee
Confidence 2233367766665 4999 6788899999999999965544222110 000 011122 22234679
Q ss_pred EEEecCCCeEeEEe
Q 005646 665 IVTAGWDGRIRSFL 678 (686)
Q Consensus 665 ivT~~~DG~Ir~w~ 678 (686)
+.|+|.||.||-|.
T Consensus 607 FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 607 FFTCGKDGKVKQWD 620 (888)
T ss_pred EEEecCcceEEeec
Confidence 99999999999993
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-29 Score=241.03 Aligned_cols=234 Identities=20% Similarity=0.349 Sum_probs=206.2
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+.+.+|..+|+.+-|+|+-..++++++|++|++||..+++
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~--------------------------------------- 141 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE--------------------------------------- 141 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchh---------------------------------------
Confidence 35677899999999999999999999999999999999987
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCC-CeeeeEee-CCCCeEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN-DHCLRVFP-HSNYVTC 399 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~-~~~~~~~~-h~~~V~~ 399 (686)
....++||...|.+++|+..| +|++++.|-.+++||..+ .+|++.+. |...|.+
T Consensus 142 -----------------------~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~ 198 (406)
T KOG0295|consen 142 -----------------------LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSS 198 (406)
T ss_pred -----------------------hhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceee
Confidence 345678999999999999999 999999999999999987 56666655 9999999
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
++|-| .++++++++.|.+|++|++.++.++ .+.+|.+.|..+..+.||..+++++.|.++++|-+.+..+...
T Consensus 199 V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~----- 272 (406)
T KOG0295|consen 199 VFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE----- 272 (406)
T ss_pred EEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh-----
Confidence 99999 8999999999999999999999888 5667889999999999999999999999999999988754331
Q ss_pred eccccCCCCCeEEEEEeCC--------------CCCeEEEEeCCCcEEEEeCCcc---------------eeEcCCCCEE
Q 005646 479 HSKKKAPCKRITGFQFLPQ--------------DSSKVMVSCADSQVRILQGPNV---------------IGKYKDGKHI 529 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~fsp~--------------~~~~l~~~s~D~~I~iwd~~~~---------------~~~~~dg~~l 529 (686)
...|..+|.+++|.|. .+..+.+++.|++|++||+.++ ++|+|.|+||
T Consensus 273 ---lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi 349 (406)
T KOG0295|consen 273 ---LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYI 349 (406)
T ss_pred ---hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEE
Confidence 3446677888888763 2358999999999999998754 6788999999
Q ss_pred EEEeCCCcEEEEeCCCCC
Q 005646 530 VSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 530 ~sgs~Dg~V~iWd~~~~~ 547 (686)
+++.+|+++++||+++..
T Consensus 350 ~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 350 LSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred EEEecCCcEEEEEeccce
Confidence 999999999999999876
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-29 Score=244.62 Aligned_cols=273 Identities=18% Similarity=0.269 Sum_probs=224.6
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
+|..|+ ..|+.+|.+||+++.|.+..+|.+..... .....++.+|..+|..+.||||.+||++||.|..+++||
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 455565 67899999999999999999998765332 233467899999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+|.....+. .+|...+.
T Consensus 298 v~tgd~~~~y~-------------------------------------------------------------~~~~~S~~ 316 (519)
T KOG0293|consen 298 VDTGDLRHLYP-------------------------------------------------------------SGLGFSVS 316 (519)
T ss_pred CCcchhhhhcc-------------------------------------------------------------cCcCCCcc
Confidence 99987443322 23567889
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~ 435 (686)
+++|.||| .+++|+.|+++..||++... +.... ....|.+++..+ |+.++++...|..|++++..+.........
T Consensus 317 sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise 394 (519)
T KOG0293|consen 317 SCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISE 394 (519)
T ss_pred eeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhccccc
Confidence 99999999 99999999999999997543 33333 446799999999 999999999999999999998877777888
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
..+|++++++.||+++++.-.+..+++||+..++++.. ..+++.+ .-|..-+|--.+..++++|+.|++|+||+
T Consensus 395 ~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k----Y~Ghkq~--~fiIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 395 EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK----YFGHKQG--HFIIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH----hhccccc--ceEEEeccCCCCcceEEecCCCceEEEEE
Confidence 89999999999999999999999999999997765542 2222222 23555667776778999999999999998
Q ss_pred CC---------------cceeEcC-CCCEEEEEeCCCcEEEEeCCCC
Q 005646 516 GP---------------NVIGKYK-DGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 516 ~~---------------~~~~~~~-dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.. +++++.| +-..+|+||+||+||||.....
T Consensus 469 r~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 469 RISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 43 4677888 6778999999999999998653
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=240.53 Aligned_cols=262 Identities=24% Similarity=0.449 Sum_probs=218.3
Q ss_pred ccCcce--eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEe
Q 005646 202 KQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (686)
Q Consensus 202 ~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~ 279 (686)
|...+. .++++++.+++++.++.+++|+..... ....+..|...+..+.|+|++++|++++.||.|++|++
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 444444 455666899999999999999987543 13456789999999999999999999999999999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.+++ .+..+..|...|.+
T Consensus 81 ~~~~--------------------------------------------------------------~~~~~~~~~~~i~~ 98 (289)
T cd00200 81 ETGE--------------------------------------------------------------CVRTLTGHTSYVSS 98 (289)
T ss_pred Cccc--------------------------------------------------------------ceEEEeccCCcEEE
Confidence 7653 23445578889999
Q ss_pred EEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccC
Q 005646 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIR 436 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~ 436 (686)
+.|++++ ++++++.|+.|++||+.+++....+. |...|++++|+| ++.++++++.|+.|++||+++++.+ .+..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 177 (289)
T cd00200 99 VAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHT 177 (289)
T ss_pred EEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEecCc
Confidence 9999998 77777779999999999998888887 899999999999 7888888888999999999987765 444566
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
..+.+++|+|+++.+++++.+|.+++||+..++.... ...|...+.++.|+| ++.++++++.|+.|++|+.
T Consensus 178 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--------~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT--------LRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDL 248 (289)
T ss_pred cccceEEECCCcCEEEEecCCCcEEEEECCCCceecc--------hhhcCCceEEEEEcC-CCcEEEEEcCCCcEEEEEc
Confidence 7899999999999999999999999999987554321 224556899999999 5777777777999999996
Q ss_pred Cc---------------ceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 517 PN---------------VIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 517 ~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
.+ .+++++++++|++++.||.|++|+
T Consensus 249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 249 RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 52 366888999999999999999996
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=260.93 Aligned_cols=264 Identities=18% Similarity=0.372 Sum_probs=221.9
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
...+|.|.-.+++++-..|.|++||++-... ...|..|.++|..++|+|.+.+++|||.|..|+||+..+.+
T Consensus 13 KglsFHP~rPwILtslHsG~IQlWDYRM~tl-------i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr- 84 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQLWDYRMGTL-------IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR- 84 (1202)
T ss_pred cceecCCCCCEEEEeecCceeeeehhhhhhH-------HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce-
Confidence 4467777778999999999999999865432 45688899999999999999999999999999999998765
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
++.++.||.+.|..+.|++
T Consensus 85 -------------------------------------------------------------clftL~GHlDYVRt~~FHh 103 (1202)
T KOG0292|consen 85 -------------------------------------------------------------CLFTLLGHLDYVRTVFFHH 103 (1202)
T ss_pred -------------------------------------------------------------ehhhhccccceeEEeeccC
Confidence 4567789999999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--------------
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-------------- 428 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-------------- 428 (686)
.- .++|+|.|.||+||+..+++|+..+. |+.+|.|.+|+| ...+++++|.|.+||+||+..-+
T Consensus 104 eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~ 182 (1202)
T KOG0292|consen 104 EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMR 182 (1202)
T ss_pred CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhh
Confidence 88 99999999999999999999999998 999999999999 89999999999999999985310
Q ss_pred --------------EE--EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEE
Q 005646 429 --------------VV--DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492 (686)
Q Consensus 429 --------------~~--~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l 492 (686)
++ .+.+|...|+-++|+|.-..+++|+.|..|++|.++..+.- .. ....+|...|+++
T Consensus 183 ~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW-----Ev-DtcrgH~nnVssv 256 (1202)
T KOG0292|consen 183 GQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW-----EV-DTCRGHYNNVSSV 256 (1202)
T ss_pred ccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce-----ee-hhhhcccCCcceE
Confidence 11 23468888999999999999999999999999998754421 11 1246788999999
Q ss_pred EEeCCCCCeEEEEeCCCcEEEEeCCc--c-------------eeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 493 QFLPQDSSKVMVSCADSQVRILQGPN--V-------------IGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 493 ~fsp~~~~~l~~~s~D~~I~iwd~~~--~-------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
-|+| ...++++.+.|++|||||+.. . ++.+|..++++.| .|+-+.||.++..
T Consensus 257 lfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleRE 323 (1202)
T KOG0292|consen 257 LFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERE 323 (1202)
T ss_pred EecC-ccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEccc
Confidence 9999 889999999999999999753 2 4555666666654 5666777777643
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=229.74 Aligned_cols=305 Identities=15% Similarity=0.165 Sum_probs=237.7
Q ss_pred cccCcceeee--cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~~~~s--~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+-+++ |+.+++++|+.|....||+...... ..++.+|+..|+++.|+.||.|||||+.+|.|+||+
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-------~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-------AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc-------eeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 4666665554 5556899999999999998876542 356889999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
..++.....+.... .-+.+...++.....++...++..-++.+.. +...+.+.||..+++
T Consensus 135 ~stg~~~~~~~~e~---~dieWl~WHp~a~illAG~~DGsvWmw~ip~-----------------~~~~kv~~Gh~~~ct 194 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEV---EDIEWLKWHPRAHILLAGSTDGSVWMWQIPS-----------------QALCKVMSGHNSPCT 194 (399)
T ss_pred cccCceEEEeeccc---CceEEEEecccccEEEeecCCCcEEEEECCC-----------------cceeeEecCCCCCcc
Confidence 99998776665222 2223333333333333333333222222211 145678899999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec-
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD- 434 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~- 434 (686)
+=.|.|+| +++++..||+|++||..+++++..+. .....+|+.++. .+..++.|+.++.+++-...+++++....
T Consensus 195 ~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 195 CGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNG 273 (399)
T ss_pred cccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc-ccceeEeccCCccEEEEccccceEEEecCC
Confidence 99999999 99999999999999999999998887 556788999998 89999999999999999999998875443
Q ss_pred --------cCCcEEE---EEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 435 --------IRQIVTA---VCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 435 --------~~~~V~~---v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
+...+.+ +.++..=.++|+|+.||+|.|||+...++.. .-.|...|+.+.|.+ ..+|+
T Consensus 274 ~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~---------~c~he~~V~~l~w~~--t~~l~ 342 (399)
T KOG0296|consen 274 TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH---------ICEHEDGVTKLKWLN--TDYLL 342 (399)
T ss_pred CCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe---------eccCCCceEEEEEcC--cchhe
Confidence 2233444 4445566788999999999999998765542 334667799999998 57999
Q ss_pred EEeCCCcEEEEeCCcc---------------eeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 504 VSCADSQVRILQGPNV---------------IGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 504 ~~s~D~~I~iwd~~~~---------------~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
+++.+|.|++||..+. ++.+|+.++++|+|.|++.+|+++.
T Consensus 343 t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 343 TACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999998754 4567899999999999999999874
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=247.42 Aligned_cols=233 Identities=21% Similarity=0.346 Sum_probs=201.1
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccC-CceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHD-GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
...++.++.++++|..+|.||+|+..-+. .+.+++|. ..|++++|+|+...++|++.||+|+|||....+
T Consensus 143 ~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k- 213 (464)
T KOG0284|consen 143 TMKWSHNGTWMISGDKGGMIKYWQPNMNN--------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK- 213 (464)
T ss_pred eEEEccCCCEEEEcCCCceEEecccchhh--------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc-
Confidence 45678899999999999999999754322 23345554 999999999999999999999999999987654
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
+-..+.||.-.|.+++|+|
T Consensus 214 -------------------------------------------------------------ee~vL~GHgwdVksvdWHP 232 (464)
T KOG0284|consen 214 -------------------------------------------------------------EERVLRGHGWDVKSVDWHP 232 (464)
T ss_pred -------------------------------------------------------------hhheeccCCCCcceeccCC
Confidence 3345689999999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE-EEEeccCCcEEE
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-VDWVDIRQIVTA 441 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~-~~~~~~~~~V~~ 441 (686)
.. +|+++|.|..|++||.+++.|+.++. |...|..+.|+| ++++|+|+|.|..++++|+++.+- ..+.+|+..|++
T Consensus 233 ~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~ 311 (464)
T KOG0284|consen 233 TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTS 311 (464)
T ss_pred ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhee
Confidence 88 99999999999999999999999998 999999999999 889999999999999999996554 466679999999
Q ss_pred EEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 442 VCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 442 v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
+.|+| ...+|.+|+.||.|..|.+...+.+ .....+|...|.+++|+| -+.+|++|+.|.++++|.-.
T Consensus 312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~-------~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPL-------GEIPPAHDGEIWSLAYHP-LGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eccccccccceeeccCCCceEEEeccccccc-------cCCCcccccceeeeeccc-cceeEeecCCCcceeeeccC
Confidence 99999 5567888999999999999743322 223567889999999999 89999999999999999743
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-29 Score=239.51 Aligned_cols=274 Identities=22% Similarity=0.328 Sum_probs=217.9
Q ss_pred ecccCcceeeecCCCccceeeccceEEEEEcCCccccccccccC-ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 200 VDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKG-QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 200 ~~~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~-~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
...+.++..|+++++++++|+.||.|.||++-.....-.-.|+. ..|--|..+|.||.|+.|...||||+.||.|+||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 45567899999999999999999999999986543211111222 24556889999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+|.+++.+. ++|+..|+
T Consensus 292 i~tG~ClRrFd-------------------------------------------------------------rAHtkGvt 310 (508)
T KOG0275|consen 292 IETGQCLRRFD-------------------------------------------------------------RAHTKGVT 310 (508)
T ss_pred EecchHHHHhh-------------------------------------------------------------hhhccCee
Confidence 99998655443 36999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec--
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-- 434 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-- 434 (686)
++.|+.|+ .+++++.|.++||.-+.+|++++.|. |..+|+...|.+ +++++++++.||+|++|+..+.+++..+.
T Consensus 311 ~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~ 389 (508)
T KOG0275|consen 311 CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPL 389 (508)
T ss_pred EEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCC
Confidence 99999999 99999999999999999999999998 999999999999 99999999999999999999999885553
Q ss_pred -cCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 435 -IRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 435 -~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
...+|+++-.-| +...++++...++++|-++...-.. .....+...+...+..++| .+.++...+.|+.++
T Consensus 390 ~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVr------sfsSGkREgGdFi~~~lSp-kGewiYcigED~vlY 462 (508)
T KOG0275|consen 390 GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVR------SFSSGKREGGDFINAILSP-KGEWIYCIGEDGVLY 462 (508)
T ss_pred CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEe------eeccCCccCCceEEEEecC-CCcEEEEEccCcEEE
Confidence 355688888777 5568888999999999998753321 1111233445666777888 667777777777777
Q ss_pred EEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 513 ILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 513 iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
-+...+ .+.-+|..+.||+-++||.+++|.
T Consensus 463 CF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 463 CFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 665432 244566777777777777777774
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-27 Score=237.77 Aligned_cols=232 Identities=27% Similarity=0.548 Sum_probs=197.6
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+.+++|.++|++++|+|++++|++++.||.|++|++.+++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~---------------------------------------- 42 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE---------------------------------------- 42 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC----------------------------------------
Confidence 4577899999999999999999999999999999997654
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~ 401 (686)
....+.+|...+..+.|+|++ +|++++.|+.|++||+.+++.+..+. |...|.++.
T Consensus 43 ----------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~ 100 (289)
T cd00200 43 ----------------------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVA 100 (289)
T ss_pred ----------------------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEE
Confidence 234455688889999999999 99999999999999999987777776 888999999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCcEEEE-eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeec
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDW-VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~-~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~ 480 (686)
|+| ++.++++++.||.|++||+.+++.... ..+...+++++|+|+++++++++.+|.|++||+..++.....
T Consensus 101 ~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~------ 173 (289)
T cd00200 101 FSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL------ 173 (289)
T ss_pred EcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeE------
Confidence 999 788888888899999999997776644 457788999999999999999888999999999866543321
Q ss_pred cccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 481 ~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
..|...|.++.|+| ++..+++++.|+.|++||..+ .+.+.+++.++++++.||.|++|++.+
T Consensus 174 --~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 174 --TGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred --ecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 24556799999999 677888888899999999652 256777889999998899999999986
Q ss_pred CC
Q 005646 546 HE 547 (686)
Q Consensus 546 ~~ 547 (686)
+.
T Consensus 251 ~~ 252 (289)
T cd00200 251 GE 252 (289)
T ss_pred ce
Confidence 44
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-28 Score=234.68 Aligned_cols=270 Identities=18% Similarity=0.263 Sum_probs=221.4
Q ss_pred ccCcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCC---CEEEEEeCCCcEEEEE
Q 005646 202 KQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG---QYLASAGDDGVVRLWQ 278 (686)
Q Consensus 202 ~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg---~~Lasgs~Dg~I~vWd 278 (686)
|..-+.++...++++++|+.||.++||+...... .++.||.++|.+++|.-.. ..|+++|.|.++++|.
T Consensus 104 hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~--------~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 104 HDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSI--------KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred chhhhhhhcccCceEEEeecCCeeEEEecCCceE--------EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence 4444555655688999999999999999765433 5678999999988885433 3599999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
++.++... +.++.-+||...|-
T Consensus 176 ~~~~~~~~----------------------------------------------------------~~~~~~~GHk~~V~ 197 (423)
T KOG0313|consen 176 WNVGENKV----------------------------------------------------------KALKVCRGHKRSVD 197 (423)
T ss_pred ecCchhhh----------------------------------------------------------hHHhHhccccccee
Confidence 98766221 12333359999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECC-------------------------CCeeeeEee-CCCCeEEEEEeecCCCEEE
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVG-------------------------NDHCLRVFP-HSNYVTCVHFNPVDDNYFI 411 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~-------------------------~~~~~~~~~-h~~~V~~v~fsp~~~~~l~ 411 (686)
+++..+++ .+++||.|.+|.||+.. ++.++.++. |..+|.++.|++ ...++
T Consensus 198 sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~y 275 (423)
T KOG0313|consen 198 SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIY 275 (423)
T ss_pred EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceE
Confidence 99999999 99999999999999931 122444444 999999999986 77899
Q ss_pred EEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEE
Q 005646 412 SGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITG 491 (686)
Q Consensus 412 sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~ 491 (686)
+++.|.+|+.||+.++..+........++++.++|..++|++|+.|..+++||.+++.-.. ......+|...|.+
T Consensus 276 S~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~-----v~~s~~gH~nwVss 350 (423)
T KOG0313|consen 276 SVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV-----VSQSLIGHKNWVSS 350 (423)
T ss_pred eecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCce-----eEEeeecchhhhhh
Confidence 9999999999999999999888889999999999999999999999999999998764322 11224567789999
Q ss_pred EEEeCCCCCeEEEEeCCCcEEEEeCCcce---------------eEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 492 FQFLPQDSSKVMVSCADSQVRILQGPNVI---------------GKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 492 l~fsp~~~~~l~~~s~D~~I~iwd~~~~~---------------~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
+.|+|.+...|++++.|+++++||..+.- .-..++.+|++||.|.+|+|+.-.
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 99999999999999999999999987542 122378899999999999998754
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=236.59 Aligned_cols=219 Identities=21% Similarity=0.343 Sum_probs=184.9
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
....|.|+.+. ...+++|..|.+|+|||.++-.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~--------------------------------------------- 228 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE--------------------------------------------- 228 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHH---------------------------------------------
Confidence 45679999884 5579999999999999987654
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCC
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDD 407 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~ 407 (686)
.+..+.||++.|.|+.|... .|++||.|.+|++||++++++++++- |...|..+.|+ .
T Consensus 229 -----------------c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~---n 287 (499)
T KOG0281|consen 229 -----------------CLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS---N 287 (499)
T ss_pred -----------------HHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe---C
Confidence 44567899999999998543 89999999999999999999999876 89999999996 4
Q ss_pred CEEEEEEcCCcEEEEecCCCcEE----EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecccc
Q 005646 408 NYFISGSIDGKVRIWAVLSCHVV----DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (686)
Q Consensus 408 ~~l~sgs~Dg~V~iwd~~~~~~~----~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 483 (686)
+++++++.|.++++||+....-+ .+.+|...|+.+.|+ .+++++++.|.+|++|++.+..... ...
T Consensus 288 g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvR--------tl~ 357 (499)
T KOG0281|consen 288 GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVR--------TLN 357 (499)
T ss_pred CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeeh--------hhh
Confidence 89999999999999999876533 355889999999995 4599999999999999999987654 245
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCccee-------------EcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 005646 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG-------------KYKDGKHIVSAGEDSNVYMWNCIGHEE 548 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~-------------~~~dg~~l~sgs~Dg~V~iWd~~~~~~ 548 (686)
+|...|.++++ .+.++++|+.|.+||+||...+.+ .--|.+.|++|+.||+|+|||+..+..
T Consensus 358 gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 358 GHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred cccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccC
Confidence 56677888877 458999999999999999875422 222889999999999999999998763
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-28 Score=228.06 Aligned_cols=223 Identities=21% Similarity=0.342 Sum_probs=181.3
Q ss_pred cCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee---eeeccCCCCCcceEEeecCCCCceeeeeccccc
Q 005646 242 KGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL---TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKI 318 (686)
Q Consensus 242 ~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (686)
....+..|++++.+-+|+|||.++|||+.|..|+|.|+...-.. .++.....
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~------------------------- 158 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDT------------------------- 158 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCc-------------------------
Confidence 34457789999999999999999999999999999998632110 00000000
Q ss_pred eeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCe---eeeEeeCC
Q 005646 319 SILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH---CLRVFPHS 394 (686)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~---~~~~~~h~ 394 (686)
...-..+++|..|..+|++|.|+|.. .|++++.|++|+++|+.... ..+.|...
T Consensus 159 ----------------------qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~ 216 (430)
T KOG0640|consen 159 ----------------------QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDT 216 (430)
T ss_pred ----------------------ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhcc
Confidence 00012468889999999999999988 99999999999999997654 34556678
Q ss_pred CCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE----EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD----WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 395 ~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~----~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
.+|.+|.|+| .|.+|+.|....++|+||+.+.++.. -.+|.+.|+++.|++.|++.++|+.||.|++||--.+++
T Consensus 217 ~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC 295 (430)
T KOG0640|consen 217 EPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC 295 (430)
T ss_pred ceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH
Confidence 8999999999 99999999999999999999998763 335788999999999999999999999999999877775
Q ss_pred eeeeeEEeeccccCC-CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 471 ELDAEICVHSKKKAP-CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 471 ~~~~~~~~~~~~~~~-~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.. ..++| ...|.+..|.. +|+||++.+.|..|++|.+.++.
T Consensus 296 v~t-------~~~AH~gsevcSa~Ftk----------------------------n~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 296 VRT-------IGNAHGGSEVCSAVFTK----------------------------NGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred HHH-------HHhhcCCceeeeEEEcc----------------------------CCeEEeecCCcceeeeeeecCCc
Confidence 432 23334 35688888888 99999999999999999999976
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-28 Score=231.19 Aligned_cols=240 Identities=23% Similarity=0.417 Sum_probs=209.3
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeecc
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (686)
+.+.-+-|..|+|||+||++|+.||.|.|||+.+|+....++..
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ------------------------------------ 254 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ------------------------------------ 254 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhh------------------------------------
Confidence 45677889999999999999999999999999999865544422
Q ss_pred CCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEee
Q 005646 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNP 404 (686)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp 404 (686)
....|.-+..+|.|+.|+.|. .|++|+.||.|++|.+.+|.|++.|. |...|+|+.|+.
T Consensus 255 ------------------Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr 316 (508)
T KOG0275|consen 255 ------------------AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR 316 (508)
T ss_pred ------------------hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc
Confidence 122344588999999999999 99999999999999999999999997 999999999999
Q ss_pred cCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecccc
Q 005646 405 VDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (686)
Q Consensus 405 ~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 483 (686)
|+..+++++.|.++||.-+.+++++ .+.+|...|+.+.|++||..+++++.||+|++|+..+..+..... ..
T Consensus 317 -D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk------~~ 389 (508)
T KOG0275|consen 317 -DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFK------PL 389 (508)
T ss_pred -CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhcc------CC
Confidence 9999999999999999999999987 677899999999999999999999999999999999877654332 22
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-----------------eeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-----------------IGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~-----------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
+...+|+.+...|.++..++++-..++|.|.++... .+.+|.|.++.+.++|+.+|.+.+.++
T Consensus 390 ~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 390 GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC
Confidence 344679999999988999999999999999986422 457789999999999999999999998
Q ss_pred CC
Q 005646 547 EE 548 (686)
Q Consensus 547 ~~ 548 (686)
+.
T Consensus 470 ~L 471 (508)
T KOG0275|consen 470 KL 471 (508)
T ss_pred ce
Confidence 74
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-27 Score=216.74 Aligned_cols=269 Identities=20% Similarity=0.338 Sum_probs=215.0
Q ss_pred ccCcceeeecC-CCcccee-------eccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCCC
Q 005646 202 KQGEGERVRLN-EEDAMFC-------SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDG 272 (686)
Q Consensus 202 ~~~~~~~~s~~-~~~l~~g-------~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg 272 (686)
.++....|+|- +++|+.+ ...|++.|.+..... .+...+.+ .-...+..++|+++ .+.+++++.||
T Consensus 9 f~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~----gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDG 83 (311)
T KOG0277|consen 9 FHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK----GIQECQSY-DTEDGLFDVAWSENHENQVIAASGDG 83 (311)
T ss_pred cccceeEecccccchhheeehhhcccccCceEEEEecCCCC----CeEEEEee-ecccceeEeeecCCCcceEEEEecCc
Confidence 55666677754 3455443 346788888764211 11111112 23568999999995 55788999999
Q ss_pred cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc
Q 005646 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (686)
Q Consensus 273 ~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (686)
+++|||+... .+|++.++.
T Consensus 84 SLrl~d~~~~-------------------------------------------------------------s~Pi~~~kE 102 (311)
T KOG0277|consen 84 SLRLFDLTMP-------------------------------------------------------------SKPIHKFKE 102 (311)
T ss_pred eEEEeccCCC-------------------------------------------------------------CcchhHHHh
Confidence 9999995332 258899999
Q ss_pred CCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC-Cc
Q 005646 353 HSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CH 428 (686)
Q Consensus 353 h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-~~ 428 (686)
|..+|.++.|++.. .++++|.|++|++|+...++.+.+|. |+.-|...+|+|..+++|+++|.|+++++||++. ++
T Consensus 103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk 182 (311)
T KOG0277|consen 103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK 182 (311)
T ss_pred hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc
Confidence 99999999999865 78888999999999999999999998 9999999999999999999999999999999985 45
Q ss_pred EEEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 429 VVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 429 ~~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
.+.+..|...|.++.|+. +.+.+++|+.|+.|+.||++.-+... ....+|.-.|..+.|+|.....|++++.
T Consensus 183 ~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl-------~eL~gh~~AVRkvk~Sph~~~lLaSasY 255 (311)
T KOG0277|consen 183 FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPL-------FELNGHGLAVRKVKFSPHHASLLASASY 255 (311)
T ss_pred eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccc-------eeecCCceEEEEEecCcchhhHhhhccc
Confidence 556677888999999998 66789999999999999998765331 1235677889999999988899999999
Q ss_pred CCcEEEEeCCcc----------------eeEcC-CCCEEEEEeCCCcEEEEeC
Q 005646 508 DSQVRILQGPNV----------------IGKYK-DGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 508 D~~I~iwd~~~~----------------~~~~~-dg~~l~sgs~Dg~V~iWd~ 543 (686)
|-++||||.... +.+++ ++.++|+++-|+.++||+.
T Consensus 256 DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 256 DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 999999996521 22333 7899999999999999984
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=239.98 Aligned_cols=255 Identities=16% Similarity=0.246 Sum_probs=210.3
Q ss_pred CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccC
Q 005646 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 212 ~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
.+..+++++.|+.|+||++..... ..+++.+|..+|.+++|+++|..++|+|.|+.|++||+++|+++..+.
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~------~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-- 297 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRR------CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-- 297 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcc------eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe--
Confidence 556889999999999999866332 246788999999999999999999999999999999999998665543
Q ss_pred CCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEE
Q 005646 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLL 369 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~ 369 (686)
-...+.|+.|+|++ .++
T Consensus 298 -------------------------------------------------------------~~~~~~cvkf~pd~~n~fl 316 (503)
T KOG0282|consen 298 -------------------------------------------------------------LDKVPTCVKFHPDNQNIFL 316 (503)
T ss_pred -------------------------------------------------------------cCCCceeeecCCCCCcEEE
Confidence 22466899999988 889
Q ss_pred EEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc--CCcEEEEEEcc
Q 005646 370 SASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI--RQIVTAVCYRP 446 (686)
Q Consensus 370 s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~--~~~V~~v~~sp 446 (686)
+|+.|+.|+.||+++++.++.+. |-+.|..|.|-| ++.+|++.+.|+.|+||+.+..-.+..+.. .....++..+|
T Consensus 317 ~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P 395 (503)
T KOG0282|consen 317 VGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP 395 (503)
T ss_pred EecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC
Confidence 99999999999999999999988 889999999999 999999999999999999998876644432 23456789999
Q ss_pred CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCC--CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-----
Q 005646 447 DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP--CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV----- 519 (686)
Q Consensus 447 dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~----- 519 (686)
++.++++-+.|+.|.+|.+...- .+. ......+| .+.-..+.|+| |+.+|++|..||.+.+||..+.
T Consensus 396 ~~~~~~aQs~dN~i~ifs~~~~~-r~n----kkK~feGh~vaGys~~v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl~~~ 469 (503)
T KOG0282|consen 396 NGKWFAAQSMDNYIAIFSTVPPF-RLN----KKKRFEGHSVAGYSCQVDFSP-DGRTLCSGDSDGKVNFWDWKTTKLVSK 469 (503)
T ss_pred CCCeehhhccCceEEEEeccccc-ccC----HhhhhcceeccCceeeEEEcC-CCCeEEeecCCccEEEeechhhhhhhc
Confidence 99999999999999999965322 111 11112233 24456789999 9999999999999999996542
Q ss_pred ----------eeEcC-CCCEEEEEeCCCcEEEEe
Q 005646 520 ----------IGKYK-DGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 520 ----------~~~~~-dg~~l~sgs~Dg~V~iWd 542 (686)
+.|+| ....+||++-||.|++|+
T Consensus 470 lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 470 LKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 45666 557899999999999996
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-26 Score=245.99 Aligned_cols=207 Identities=18% Similarity=0.278 Sum_probs=159.3
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccc-----ccc-ccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEe
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKEL-----SAL-YKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQV 279 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~-----~~~-~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~ 279 (686)
...++++..++++..+.....|+.......+ ..+ .....+.+|.+.|++++|+| ++++||||+.|++|+|||+
T Consensus 26 ~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi 105 (493)
T PTZ00421 26 STALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGI 105 (493)
T ss_pred ccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEec
Confidence 3444555566666666666666543321110 000 11235789999999999999 8899999999999999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.++..... ...++..+.+|...|.+
T Consensus 106 ~~~~~~~~-------------------------------------------------------~~~~l~~L~gH~~~V~~ 130 (493)
T PTZ00421 106 PEEGLTQN-------------------------------------------------------ISDPIVHLQGHTKKVGI 130 (493)
T ss_pred CCCccccc-------------------------------------------------------cCcceEEecCCCCcEEE
Confidence 76431100 01356778899999999
Q ss_pred EEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-Eecc
Q 005646 360 LSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDI 435 (686)
Q Consensus 360 l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~ 435 (686)
++|+|++ +|++++.|++|+|||+.+++++..+. |...|++++|+| ++++|++++.|++|+|||+++++.+. ...|
T Consensus 131 l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 131 VSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred EEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence 9999975 89999999999999999999988887 999999999999 99999999999999999999988764 4455
Q ss_pred CCc-EEEEEEccCCCEEEEEe----cCCcEEEEeCCCCe
Q 005646 436 RQI-VTAVCYRPDGQGGIVGS----MMGDCRFYNVSDNH 469 (686)
Q Consensus 436 ~~~-V~~v~~spdg~~l~~gs----~dg~i~iwd~~~~~ 469 (686)
... +..+.|.+++..+++++ .|+.|++||+++..
T Consensus 210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 543 45678999887777654 47899999997644
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-26 Score=232.52 Aligned_cols=260 Identities=14% Similarity=0.283 Sum_probs=213.7
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+.+..|...|.++.|+|...+++++-..|.|.|||.++...++.+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf----------------------------------- 51 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF----------------------------------- 51 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-----------------------------------
Confidence 346669999999999999999999999999999999887644433
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~ 401 (686)
.-..-+|.+..|-+.. .+++|+.|..||||+..++..++.|. |.++|.||+
T Consensus 52 ---------------------------eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~ia 104 (794)
T KOG0276|consen 52 ---------------------------EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIA 104 (794)
T ss_pred ---------------------------eecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeee
Confidence 3345577788887766 99999999999999999999999999 999999999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCc--EEEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
.+| ...+++|+|.|-+|++||....= ...+.+|...|.+++|.| |.+.+|+++-|++|++|.+........
T Consensus 105 vHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT----- 178 (794)
T KOG0276|consen 105 VHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT----- 178 (794)
T ss_pred ecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee-----
Confidence 999 88999999999999999998763 336778999999999999 778999999999999999977654432
Q ss_pred eccccCCCCCeEEEEEeCC-CCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 479 HSKKKAPCKRITGFQFLPQ-DSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~fsp~-~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
..+|...|+++.|-+. +..+|++|+.|..|+|||..+ .++|+|.-..|+|||+||+|+||+
T Consensus 179 ---l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 179 ---LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred ---eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEec
Confidence 3457788999999884 346999999999999999643 477899999999999999999999
Q ss_pred CCCCCCC--CccccccccccccccCCcEEEecCC
Q 005646 543 CIGHEEP--AHDQAKTIRSLERFTTNASIAIPWC 574 (686)
Q Consensus 543 ~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~s~~ 574 (686)
-.+-+.. .......++++........+++-.|
T Consensus 256 s~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~D 289 (794)
T KOG0276|consen 256 SKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFD 289 (794)
T ss_pred CcceehhhhhhcCCceEEEEeecCCCCeEEEecc
Confidence 8875522 2233345555554444444555555
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=214.23 Aligned_cols=295 Identities=18% Similarity=0.220 Sum_probs=219.0
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+ .++..+|+.|.++++|..+.||-...... .-++.||++.|+|+..+.+.++|+||+.|.++++||
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-------lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-------LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCce-------eeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence 344444 45567889999999999999996533322 357889999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEE--EeCCcc---ccccCCCeEEeccC
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACV--VFPPKV---FRILEKPLHEFHGH 353 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~l~~h 353 (686)
+.+|+.+..++.+. .+..+.++..+...+....+.-...+. +++.+. -...+.|+..+..+
T Consensus 81 v~tGk~la~~k~~~--------------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 81 VETGKQLATWKTNS--------------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP 146 (327)
T ss_pred cCCCcEEEEeecCC--------------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence 99999888877543 233334444444444444333222222 222211 11124578888889
Q ss_pred CCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEe-e-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-P-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~-~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
...++.+-|.|-+ .|++|..||.|.+||+++++.+..- . |...|+.|+++| +..+|++++.|.+-++||.++-+++
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v~ 225 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEVL 225 (327)
T ss_pred ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCccceeeeccceeeE
Confidence 9999999999999 9999999999999999998655444 3 999999999999 9999999999999999999999999
Q ss_pred EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEe--CCCCeeeeeee----EEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 431 DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN--VSDNHLELDAE----ICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 431 ~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd--~~~~~~~~~~~----~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
.......+|++.+++|-...++.|+....--|=- .+.++.....- -.-.+..++|.++|++++|+|
T Consensus 226 Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-------- 297 (327)
T KOG0643|consen 226 KTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-------- 297 (327)
T ss_pred EEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC--------
Confidence 9999999999999999877777765433322222 22222111000 001234678999999999999
Q ss_pred EeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 505 SCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 505 ~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+|+..++|++||.|++.-++.
T Consensus 298 --------------------dGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 298 --------------------DGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred --------------------CCcccccCCCCceEEEEEecc
Confidence 788888888888888876654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=211.05 Aligned_cols=235 Identities=19% Similarity=0.329 Sum_probs=196.2
Q ss_pred ccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEe
Q 005646 202 KQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (686)
Q Consensus 202 ~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~ 279 (686)
+++.+ .++..+|++.++++.|.+|++|+..... ..+++.+|...|..++.+.|...+++||.|+.|.+||+
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-------liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-------LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeecccccc-------eeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 44444 4566678899999999999999754432 35778999999999999999999999999999999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.+|+ .++.|.+|.+.|+.
T Consensus 89 ~TGk--------------------------------------------------------------v~Rr~rgH~aqVNt 106 (307)
T KOG0316|consen 89 NTGK--------------------------------------------------------------VDRRFRGHLAQVNT 106 (307)
T ss_pred ccCe--------------------------------------------------------------eeeecccccceeeE
Confidence 9987 45677899999999
Q ss_pred EEeeCCC-EEEEEECCCcEEEEECCCC--eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc
Q 005646 360 LSWSKNN-YLLSASIDKTVRLWRVGND--HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~V~iWd~~~~--~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~ 435 (686)
++|+.+. .+++|+.|.++++||.++. ++++.+. ..+.|.+|.. .+..|++|+.||++|.||++.++... -..
T Consensus 107 V~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v---~~heIvaGS~DGtvRtydiR~G~l~s-Dy~ 182 (307)
T KOG0316|consen 107 VRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV---AEHEIVAGSVDGTVRTYDIRKGTLSS-DYF 182 (307)
T ss_pred EEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe---cccEEEeeccCCcEEEEEeecceeeh-hhc
Confidence 9999988 9999999999999999865 5777777 7789999998 46889999999999999999998752 224
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEE--EEEeCCCCCeEEEEeCCCcEEE
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITG--FQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~--l~fsp~~~~~l~~~s~D~~I~i 513 (686)
..+|++++|++||+..++++.|+++++.|-.++++... .++|...=.. .+++. ....+++|+.||.|.+
T Consensus 183 g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s--------YkGhkn~eykldc~l~q-sdthV~sgSEDG~Vy~ 253 (307)
T KOG0316|consen 183 GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS--------YKGHKNMEYKLDCCLNQ-SDTHVFSGSEDGKVYF 253 (307)
T ss_pred CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHH--------hcccccceeeeeeeecc-cceeEEeccCCceEEE
Confidence 57899999999999999999999999999999886542 3344443333 34444 5578999999999999
Q ss_pred EeCCc
Q 005646 514 LQGPN 518 (686)
Q Consensus 514 wd~~~ 518 (686)
||+.+
T Consensus 254 wdLvd 258 (307)
T KOG0316|consen 254 WDLVD 258 (307)
T ss_pred EEecc
Confidence 99764
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-27 Score=231.68 Aligned_cols=266 Identities=22% Similarity=0.311 Sum_probs=226.9
Q ss_pred ccCcceee--ecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEe
Q 005646 202 KQGEGERV--RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (686)
Q Consensus 202 ~~~~~~~~--s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~ 279 (686)
|.+++..+ -++.+.+++|+.|..|++|+......+ ...+|.|-.++|+.++|.++++++++++.|+.+++|++
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-----~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE-----LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhh-----hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 44555544 455579999999999999987655432 24668888999999999999999999999999999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
...+ ..++|.||++.|++
T Consensus 249 d~~r--------------------------------------------------------------~~~TLsGHtdkVt~ 266 (459)
T KOG0288|consen 249 DSLR--------------------------------------------------------------LRHTLSGHTDKVTA 266 (459)
T ss_pred cchh--------------------------------------------------------------hhhhhcccccceee
Confidence 8765 45778899999999
Q ss_pred EEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCc
Q 005646 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~ 438 (686)
+.|.... .+++|+.|.+|++||+....|.+++-....+..|..+ ...+++|..|++||+||+++..+.......+.
T Consensus 267 ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~ 343 (459)
T KOG0288|consen 267 AKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGR 343 (459)
T ss_pred ehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCcc
Confidence 9998877 6999999999999999999999998888888888875 46799999999999999999999988888999
Q ss_pred EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC-
Q 005646 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP- 517 (686)
Q Consensus 439 V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~- 517 (686)
|+++..+++|..+++++.|.++.+.|+++........ ..+.+.+ ...+.+.|+| ++.++++|+.||.|+||+..
T Consensus 344 vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s--A~g~k~a--sDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 344 VTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS--AEGFKCA--SDWTRVVFSP-DGSYVAAGSADGSVYIWSVFT 418 (459)
T ss_pred eeeEeeccCCeEEeeecCCCceeeeecccccEEEEee--ccccccc--cccceeEECC-CCceeeeccCCCcEEEEEccC
Confidence 9999999999999999999999999999876554322 2222333 3389999999 88999999999999999853
Q ss_pred ----------------cceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 518 ----------------NVIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 518 ----------------~~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
+.+.|.|.|.+|++++.++.+.+|.
T Consensus 419 gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 419 GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 3477889999999999999999994
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-25 Score=211.90 Aligned_cols=240 Identities=19% Similarity=0.368 Sum_probs=191.6
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+.+..-.+.|++|.|+++|.+|++++.|.+|+|||..+++.+..+.
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~--------------------------------- 53 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN--------------------------------- 53 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee---------------------------------
Confidence 44555567899999999999999999999999999999887544443
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC--CCcEEEEECCCCeeeeEee-CCCCeE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI--DKTVRLWRVGNDHCLRVFP-HSNYVT 398 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~--Dg~V~iWd~~~~~~~~~~~-h~~~V~ 398 (686)
.+.-.|..+.|.... .++.++. |.+||.-++.+.+.++.|. |...|+
T Consensus 54 -----------------------------skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~ 104 (311)
T KOG1446|consen 54 -----------------------------SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVN 104 (311)
T ss_pred -----------------------------cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEE
Confidence 344455555554433 4555554 8999999999999999998 999999
Q ss_pred EEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 399 ~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
+|..+| -++.|++++.|++||+||++..++......... ..++|.|.|-++|++...+.|++||++.-.......+.+
T Consensus 105 sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i 182 (311)
T KOG1446|consen 105 SLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSI 182 (311)
T ss_pred EEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEcc
Confidence 999999 679999999999999999998877765554443 347899999999999988899999998643222111111
Q ss_pred eccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc------------------eeEcCCCCEEEEEeCCCcEEE
Q 005646 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------------------IGKYKDGKHIVSAGEDSNVYM 540 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~------------------~~~~~dg~~l~sgs~Dg~V~i 540 (686)
........+.+.|+| +++.|+++...+.+.+.|..++ .++.||++++++|+.||+|++
T Consensus 183 ---~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~v 258 (311)
T KOG1446|consen 183 ---TDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHV 258 (311)
T ss_pred ---CCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEE
Confidence 224457799999999 8999999999999999985432 457799999999999999999
Q ss_pred EeCCCCCCCC
Q 005646 541 WNCIGHEEPA 550 (686)
Q Consensus 541 Wd~~~~~~~~ 550 (686)
|+++++....
T Consensus 259 w~~~tg~~v~ 268 (311)
T KOG1446|consen 259 WNLETGKKVA 268 (311)
T ss_pred EEcCCCcEee
Confidence 9999987433
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=241.81 Aligned_cols=186 Identities=15% Similarity=0.312 Sum_probs=151.5
Q ss_pred eeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCee-eeeeccCCCCCc
Q 005646 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDER-LTEVDIPEIDPS 296 (686)
Q Consensus 219 g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~-~~~~~~~~~~~~ 296 (686)
|+.++.|++|+..+.. ....+.+|.++|++++|+|+ +++||||+.|++|+|||+.++.. ...+
T Consensus 50 GG~~gvI~L~~~~r~~-------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i-------- 114 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI-------- 114 (568)
T ss_pred CCceeEEEeeecCCCc-------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc--------
Confidence 6678899999865431 23567899999999999996 78999999999999999976431 0000
Q ss_pred ceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECC
Q 005646 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASID 374 (686)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~D 374 (686)
..++..+.+|...|.+++|+|++ .|++++.|
T Consensus 115 -----------------------------------------------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 115 -----------------------------------------------KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred -----------------------------------------------ccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 02455677899999999999988 56799999
Q ss_pred CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-EeccCCcEEE-----EEEccCC
Q 005646 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTA-----VCYRPDG 448 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~-----v~~spdg 448 (686)
++|+|||+.+++.+..+.|...|.+++|+| ++.+|++++.|++|+|||+++++.+. +..|.+.+.. ..|++++
T Consensus 148 gtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~ 226 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD 226 (568)
T ss_pred CeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC
Confidence 999999999999888888888999999999 99999999999999999999998774 4556655433 3456899
Q ss_pred CEEEEEecCC----cEEEEeCCC
Q 005646 449 QGGIVGSMMG----DCRFYNVSD 467 (686)
Q Consensus 449 ~~l~~gs~dg----~i~iwd~~~ 467 (686)
.+|++++.++ .|+|||++.
T Consensus 227 ~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 227 NYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred CEEEEEEcCCCCccEEEEEECCC
Confidence 9999987774 799999985
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=246.26 Aligned_cols=237 Identities=18% Similarity=0.351 Sum_probs=207.4
Q ss_pred cccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
...+..|..++|+|...+++++-..|.|++||.+-+.
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t------------------------------------------- 42 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT------------------------------------------- 42 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhh-------------------------------------------
Confidence 3456789999999999999999999999999997765
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEee
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNP 404 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp 404 (686)
.++.|..|.++|..+.|+|++ +++||+.|..|++|+..+.+|+.++. |-++|..+.|++
T Consensus 43 -------------------li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh 103 (1202)
T KOG0292|consen 43 -------------------LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH 103 (1202)
T ss_pred -------------------HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC
Confidence 466778899999999999999 99999999999999999999998887 999999999999
Q ss_pred cCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee----------
Q 005646 405 VDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD---------- 473 (686)
Q Consensus 405 ~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~---------- 473 (686)
...+++++|.|.+||||+..+++++ ...+|...|.|..|+|....+++++-|-+|||||+..-+....
T Consensus 104 -eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~ 182 (1202)
T KOG0292|consen 104 -EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMR 182 (1202)
T ss_pred -CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhh
Confidence 8999999999999999999999988 6678999999999999999999999999999999864321110
Q ss_pred -----------eeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC-----------------cceeEcCC
Q 005646 474 -----------AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-----------------NVIGKYKD 525 (686)
Q Consensus 474 -----------~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~-----------------~~~~~~~d 525 (686)
....+.....+|...|+-++|+| .-.++++|+.|..|++|... +++-|+|.
T Consensus 183 ~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~ 261 (1202)
T KOG0292|consen 183 GQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPH 261 (1202)
T ss_pred ccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCc
Confidence 01122233467889999999999 77899999999999999743 45778999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCC
Q 005646 526 GKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 526 g~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..+|+|.|+|++|+|||++...
T Consensus 262 q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 262 QDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred cceeEecCCCccEEEEeccccc
Confidence 9999999999999999998765
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=226.98 Aligned_cols=267 Identities=20% Similarity=0.330 Sum_probs=216.3
Q ss_pred CcceeeecCC--CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeec
Q 005646 204 GEGERVRLNE--EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE 281 (686)
Q Consensus 204 ~~~~~~s~~~--~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~ 281 (686)
..+.++++++ .+-+..+..-++.||+...... ..++.-.+..|.++.|..||++||.|...|.|+|+|..+
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~-------~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV-------RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred CcceeEecCCCCCCceEEecccEEEEEecchhhh-------hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence 3444444444 3333344456788887654321 233444677899999999999999999999999999544
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
. ..++.+++|+.+|....
T Consensus 100 r--------------------------------------------------------------~iLR~~~ah~apv~~~~ 117 (487)
T KOG0310|consen 100 R--------------------------------------------------------------VILRQLYAHQAPVHVTK 117 (487)
T ss_pred H--------------------------------------------------------------HHHHHHhhccCceeEEE
Confidence 2 14567788999999999
Q ss_pred eeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC-cEEEEeccCC
Q 005646 362 WSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVVDWVDIRQ 437 (686)
Q Consensus 362 ~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~~~ 437 (686)
|+|.+ .|++|+.|+.+++||+.+......+. |+++|.|.+|+|.++.+++||+.||+||+||++.. ..+...+|..
T Consensus 118 f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~ 197 (487)
T KOG0310|consen 118 FSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGC 197 (487)
T ss_pred ecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCC
Confidence 99987 89999999999999999998754555 99999999999988899999999999999999987 6778889999
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
+|..+.+-|.|..+++++. ..|++||+.++..... ....|.+.|||+.+.. ++..|++++-|+.+++||..
T Consensus 198 pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~-------~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 198 PVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLT-------SMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTT 268 (487)
T ss_pred ceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehh-------hhhcccceEEEEEeec-CCceEeecccccceEEEEcc
Confidence 9999999999999998754 5799999986553321 2334788999999999 78999999999999999955
Q ss_pred cc--------------eeEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 005646 518 NV--------------IGKYKDGKHIVSAGEDSNVYMWNCIGHEE 548 (686)
Q Consensus 518 ~~--------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~ 548 (686)
+. ++.+|+++.++.|-.||.+-+=+....++
T Consensus 269 ~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k 313 (487)
T KOG0310|consen 269 NYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKK 313 (487)
T ss_pred ceEEEEeeecccceeeEEecCCCceEEEecccceeeeehhhcccC
Confidence 42 67888999999999999988876665553
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=229.53 Aligned_cols=263 Identities=18% Similarity=0.286 Sum_probs=200.0
Q ss_pred eecccCcceeeecCCC---ccceeeccceEEEEEcCCcccccc---ccccCceecccCCceEEEEEeeC-CCEEEEEeCC
Q 005646 199 VVDKQGEGERVRLNEE---DAMFCSKVQRVKVYHCKKRSKELS---ALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDD 271 (686)
Q Consensus 199 ~~~~~~~~~~~s~~~~---~l~~g~~d~~v~vw~~~~~~~~~~---~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~D 271 (686)
.+.|.+++++.++.++ .+++.+..+.|.|||+.+...... ...+.-.|.+|+..-.+|+|++. .-+|++|+.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 3578899999887654 677788999999999977543222 22334478999999999999985 3479999999
Q ss_pred CcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEec
Q 005646 272 GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351 (686)
Q Consensus 272 g~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 351 (686)
++|.+||+........ ...+...+.
T Consensus 200 ~~i~lwdi~~~~~~~~-------------------------------------------------------~~~p~~~~~ 224 (422)
T KOG0264|consen 200 HTICLWDINAESKEDK-------------------------------------------------------VVDPKTIFS 224 (422)
T ss_pred CcEEEEeccccccCCc-------------------------------------------------------cccceEEee
Confidence 9999999976541100 013567788
Q ss_pred cCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCC--CeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC
Q 005646 352 GHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGN--DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~--~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~ 426 (686)
+|...|.+++|++-. ++++++.|+.+.|||+++ .++..... |.+.|+|++|+|.++.+||||+.|++|++||+|+
T Consensus 225 ~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn 304 (422)
T KOG0264|consen 225 GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN 304 (422)
T ss_pred cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence 999999999999977 899999999999999995 44444444 9999999999999999999999999999999997
Q ss_pred Cc--EEEEeccCCcEEEEEEccC-CCEEEEEecCCcEEEEeCCCCeeee------eeeEEeeccccCCCCCeEEEEEeCC
Q 005646 427 CH--VVDWVDIRQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLEL------DAEICVHSKKKAPCKRITGFQFLPQ 497 (686)
Q Consensus 427 ~~--~~~~~~~~~~V~~v~~spd-g~~l~~gs~dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~I~~l~fsp~ 497 (686)
-. +..+..|...|..|.|+|. ...||+++.|+.+.+||+..-...+ ..+..+.-...+|...|..+.|+|.
T Consensus 305 L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ 384 (422)
T KOG0264|consen 305 LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPN 384 (422)
T ss_pred cccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCC
Confidence 54 5578899999999999995 4578888999999999997432221 1111222235678899999999996
Q ss_pred CCCeEEEEeCCCcEEEEeC
Q 005646 498 DSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 498 ~~~~l~~~s~D~~I~iwd~ 516 (686)
.+..+++.+.|+.++||.+
T Consensus 385 ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 385 EPWTIASVAEDNILQIWQM 403 (422)
T ss_pred CCeEEEEecCCceEEEeec
Confidence 4444444444444444443
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=210.21 Aligned_cols=205 Identities=20% Similarity=0.347 Sum_probs=179.7
Q ss_pred eecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEe
Q 005646 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (686)
-++||+.+|+.++|+.+|.+|+|++.|.++.||--.+|+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe----------------------------------------- 43 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE----------------------------------------- 43 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-----------------------------------------
Confidence 378999999999999999999999999999999877776
Q ss_pred eccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEe
Q 005646 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403 (686)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fs 403 (686)
.+-++.||.+.|+++....+. +|++|+.|.+++|||+.+|+++..+..+.+|..+.|+
T Consensus 44 ---------------------rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~ 102 (327)
T KOG0643|consen 44 ---------------------RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFS 102 (327)
T ss_pred ---------------------eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeec
Confidence 355678999999999998887 9999999999999999999999999999999999999
Q ss_pred ecCCCEEEEEEcC-----CcEEEEecCCC-------c-EEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 404 PVDDNYFISGSID-----GKVRIWAVLSC-------H-VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 404 p~~~~~l~sgs~D-----g~V~iwd~~~~-------~-~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
+ ++++++....+ +.|.++|++.. . ......+...++.+-|.|-+++|++|..||.|.+||++++..
T Consensus 103 ~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~ 181 (327)
T KOG0643|consen 103 F-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE 181 (327)
T ss_pred c-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce
Confidence 9 88888877643 67999999843 3 445566678899999999999999999999999999998764
Q ss_pred eeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
... ....|...|+.++++| |..+++|++.|.+-++||+.+-.
T Consensus 182 ~v~-------s~~~h~~~Ind~q~s~----------------------------d~T~FiT~s~Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 182 LVD-------SDEEHSSKINDLQFSR----------------------------DRTYFITGSKDTTAKLVDVRTLE 223 (327)
T ss_pred eee-------chhhhccccccccccC----------------------------CcceEEecccCccceeeecccee
Confidence 322 2344667899999999 89999999999999999998754
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=213.10 Aligned_cols=241 Identities=21% Similarity=0.347 Sum_probs=207.0
Q ss_pred cccCcceeeecCCC--ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEGERVRLNEE--DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~~~~s~~~~--~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|++.+-....+.+ ..++++.|=+.+||+.-.... + +.| .|+.-|.+++|+.|.++|+|||.++.+||+|
T Consensus 57 ghkgavw~~~l~~na~~aasaaadftakvw~a~tgde-l------hsf-~hkhivk~~af~~ds~~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 57 GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE-L------HSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFD 128 (334)
T ss_pred ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh-h------hhh-hhhheeeeEEecccchhhhccchHHHhhhhh
Confidence 56676655555544 667889999999998654322 1 112 3888999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
++..+ .+..++.+|.+.|.
T Consensus 129 ln~p~-------------------------------------------------------------App~E~~ghtg~Ir 147 (334)
T KOG0278|consen 129 LNRPK-------------------------------------------------------------APPKEISGHTGGIR 147 (334)
T ss_pred ccCCC-------------------------------------------------------------CCchhhcCCCCcce
Confidence 97654 36677889999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCC
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ 437 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~ 437 (686)
.+.|.... .+++++.|++||+||.++++.++.+..+.+|+++..++ ++++|.+ ...+.|.+||..+-.++.......
T Consensus 148 ~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~ 225 (334)
T KOG0278|consen 148 TVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-DGRILTI-AYGSSVKFWDAKSFGLLKSYKMPC 225 (334)
T ss_pred eEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeecc-CCCEEEE-ecCceeEEeccccccceeeccCcc
Confidence 99998776 89999999999999999999999999999999999999 8876655 557789999999999999999999
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
.|.+.+++|+...+++|+.|+.++.||..++..+- ...++|.++|.++.|+|
T Consensus 226 nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~-------~~nkgh~gpVhcVrFSP--------------------- 277 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG-------SYNKGHFGPVHCVRFSP--------------------- 277 (334)
T ss_pred ccccccccCCCceEEecCcceEEEEEeccCCceee-------ecccCCCCceEEEEECC---------------------
Confidence 99999999999999999999999999999887432 13578899999999999
Q ss_pred cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 518 NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 518 ~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
||...++||+||+|+||....++
T Consensus 278 -------dGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 278 -------DGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred -------CCceeeccCCCceEEEEEecCCC
Confidence 89999999999999999988765
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=216.28 Aligned_cols=261 Identities=19% Similarity=0.235 Sum_probs=219.7
Q ss_pred cceeeecCC--CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecC
Q 005646 205 EGERVRLNE--EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 205 ~~~~~s~~~--~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~ 282 (686)
.+.++...+ +..++|+.|..+.++|...... ...|.||...|+.+.|+|+...+++++.|-.|+||.+...
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~-------l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQI-------LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS 293 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhh-------hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc
Confidence 345555444 7899999999999998765433 3568899999999999999999999999999999987543
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
. .......|..+|+.+..
T Consensus 294 s--------------------------------------------------------------~~~~~~~h~~~V~~ls~ 311 (506)
T KOG0289|consen 294 S--------------------------------------------------------------EPTSSRPHEEPVTGLSL 311 (506)
T ss_pred c--------------------------------------------------------------Cccccccccccceeeee
Confidence 3 12334569999999999
Q ss_pred eCCC-EEEEEECCCcEEEEECCCCeeeeEeeCC---CCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCC
Q 005646 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHS---NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQ 437 (686)
Q Consensus 363 s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~---~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~ 437 (686)
+|.| ||++++.|++..+.|++++.++....+. -.+++.+||| |+.+|.+|..||.|+|||+..+..+ .+.+|.+
T Consensus 312 h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~ 390 (506)
T KOG0289|consen 312 HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG 390 (506)
T ss_pred ccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCC
Confidence 9999 9999999999999999999999888864 4589999999 9999999999999999999988766 6668999
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe--
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ-- 515 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd-- 515 (686)
+|.+++|+.+|-+|++++.|+.|++||++..+.... +.+. ....+.++.|.+ .+.+|++++.|=+|++++
T Consensus 391 ~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt--~~l~-----~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k~ 462 (506)
T KOG0289|consen 391 PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKT--IQLD-----EKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKKK 462 (506)
T ss_pred ceeEEEeccCceEEEEEecCCeEEEEEehhhcccce--eecc-----ccccceeEEEcC-CCCeEEeecceeEEEEEecc
Confidence 999999999999999999999999999986653222 2221 224699999999 889999998888888876
Q ss_pred ---------------CCcceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 516 ---------------GPNVIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 516 ---------------~~~~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
..+++.|....++++++|.|..++++.+
T Consensus 463 ~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 463 TKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 2356777889999999999999998865
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=217.90 Aligned_cols=254 Identities=19% Similarity=0.344 Sum_probs=200.7
Q ss_pred ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCC
Q 005646 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~ 294 (686)
.+++++.|+++++|.++........... -+||+..|-+++..++|..+++|+.|.+|+||+..+.. ..++.....
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~---~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~-~~~~E~~s~- 235 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKVKALKV---CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDE-EDELESSSN- 235 (423)
T ss_pred eEEEecCCceEEEEEecCchhhhhHHhH---hcccccceeEEEecCCCCeEEeecccceeeecccCCCc-cccccccch-
Confidence 6899999999999999876554443332 34999999999999999999999999999999943221 111110000
Q ss_pred CcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECC
Q 005646 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASID 374 (686)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~D 374 (686)
...+..... --.....|+..+.||..+|.++.|++.+.++++|.|
T Consensus 236 -------------------~rrk~~~~~----------------~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwD 280 (423)
T KOG0313|consen 236 -------------------RRRKKQKRE----------------KEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWD 280 (423)
T ss_pred -------------------hhhhhhhhh----------------hcccccCceEEecccccceeeEEEcCCCceEeeccc
Confidence 000000000 000012588899999999999999997799999999
Q ss_pred CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--E--EEEeccCCcEEEEEEccC-CC
Q 005646 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--V--VDWVDIRQIVTAVCYRPD-GQ 449 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~--~--~~~~~~~~~V~~v~~spd-g~ 449 (686)
.+|+.||+.+++++..+..+..++|+..+| ..++|++|+.|..||+||.+++. + ..+.+|+..|.++.|+|. ..
T Consensus 281 HTIk~WDletg~~~~~~~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~ 359 (423)
T KOG0313|consen 281 HTIKVWDLETGGLKSTLTTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEF 359 (423)
T ss_pred ceEEEEEeecccceeeeecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCce
Confidence 999999999999999999999999999999 99999999999999999999764 3 378899999999999995 45
Q ss_pred EEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 450 GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 450 ~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
.|++|+.|+++++||++..+-.+. ...+|..+|.++.|.. +..+++|++|++|+|+....
T Consensus 360 ~~~S~S~D~t~klWDvRS~k~ply-------dI~~h~DKvl~vdW~~--~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 360 QLVSGSYDNTVKLWDVRSTKAPLY-------DIAGHNDKVLSVDWNE--GGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred EEEEEecCCeEEEEEeccCCCcce-------eeccCCceEEEEeccC--CceEEeccCcceEEEecccc
Confidence 688899999999999998763221 1345778999999985 67999999999999987653
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=242.26 Aligned_cols=288 Identities=20% Similarity=0.323 Sum_probs=218.5
Q ss_pred eeeecCCCccceee--ccceEEEEEcCCcccccc---c--cccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEe
Q 005646 207 ERVRLNEEDAMFCS--KVQRVKVYHCKKRSKELS---A--LYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (686)
Q Consensus 207 ~~~s~~~~~l~~g~--~d~~v~vw~~~~~~~~~~---~--~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~ 279 (686)
.++++++..+++|+ .|+.++||+.+.-..+.. . ..+..+...|.+.|+|+.|+|||+|||+||+|+.|.||..
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 45567788899999 899999998754321111 1 1122356789999999999999999999999999999998
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.... .... .....+...+ .- -+.+..+.+|...|.+
T Consensus 99 ~~~~-~~~~-----------------------fgs~g~~~~v----------------E~----wk~~~~l~~H~~DV~D 134 (942)
T KOG0973|consen 99 AEIG-SGTV-----------------------FGSTGGAKNV----------------ES----WKVVSILRGHDSDVLD 134 (942)
T ss_pred cccC-Cccc-----------------------cccccccccc----------------ce----eeEEEEEecCCCccce
Confidence 6410 0000 0000000000 00 1356788899999999
Q ss_pred EEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec---
Q 005646 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD--- 434 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~--- 434 (686)
+.|+|++ +|++++.|++|.||+..+.++++++. |.+.|..+.|.| -++||++-+.|++|+||++.+-.+...+.
T Consensus 135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred eccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence 9999999 99999999999999999999999998 999999999999 99999999999999999987755554332
Q ss_pred ----cCCcEEEEEEccCCCEEEEEec----CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC----CCC--
Q 005646 435 ----IRQIVTAVCYRPDGQGGIVGSM----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ----DSS-- 500 (686)
Q Consensus 435 ----~~~~V~~v~~spdg~~l~~gs~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~----~~~-- 500 (686)
.......+.|+|||++|++... ..++.|.+-.+.+. .....+|.+++.++.|+|. ..+
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~--------~~~LvGH~~p~evvrFnP~lfe~~~~ng 285 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV--------DKDLVGHSAPVEVVRFNPKLFERNNKNG 285 (942)
T ss_pred hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee--------eeeeecCCCceEEEEeChHHhccccccC
Confidence 2345788999999999998533 22466665433321 1224567789999999983 111
Q ss_pred ----------eEEEEeCCCcEEEEeCC----------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 501 ----------KVMVSCADSQVRILQGP----------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 501 ----------~l~~~s~D~~I~iwd~~----------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.+++|+.|++|-||... .-++|+|||..|+.+|.||+|.+..++..+
T Consensus 286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 68899999999999853 237899999999999999999999998754
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=218.91 Aligned_cols=265 Identities=17% Similarity=0.319 Sum_probs=217.3
Q ss_pred cccCcceeeecCCC---ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 005646 201 DKQGEGERVRLNEE---DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (686)
Q Consensus 201 ~~~~~~~~~s~~~~---~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW 277 (686)
.|+.-+.++..+++ .+++|+.||.|+||++..... ...+++|.+.|..|++.. ..++|+|.|.+|+.|
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-------~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-------IRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhh-------hheeecccCceeeEEecc--cceEEecCCcceeee
Confidence 56666777776665 578999999999998765432 467899999999999987 679999999999999
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCe
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 357 (686)
.+... +++++.+ ...+
T Consensus 135 k~~~~---------------------------------------------------------------p~~tilg-~s~~ 150 (433)
T KOG0268|consen 135 KIDGP---------------------------------------------------------------PLHTILG-KSVY 150 (433)
T ss_pred eccCC---------------------------------------------------------------cceeeec-cccc
Confidence 87541 2233322 2345
Q ss_pred eEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc
Q 005646 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (686)
Q Consensus 358 ~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~ 435 (686)
+.+.-+..+ .++|++. .|.|||.....++..+. ..+.|.++.|+|....+|++|+.|+.|.|||+++...+...-.
T Consensus 151 ~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~ 228 (433)
T KOG0268|consen 151 LGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL 228 (433)
T ss_pred cccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee
Confidence 566555544 7888875 59999999999999998 7788999999998888999999999999999999998876666
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
.-.-+.|+|+|.+-.+++|+.|..++.||++.-... ....+.|...|.++.|+| .++.+++|+.|.+||||.
T Consensus 229 ~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p-------~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~ 300 (433)
T KOG0268|consen 229 TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRP-------LNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFP 300 (433)
T ss_pred eccccceecCccccceeeccccccceehhhhhhccc-------chhhcccceeEEEeccCC-CcchhccccccceEEEee
Confidence 667789999998888999999999999999765432 223567889999999999 899999999999999997
Q ss_pred CC----------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 005646 516 GP----------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEE 548 (686)
Q Consensus 516 ~~----------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~ 548 (686)
.. .++.++-|.+|+++||+|++|++|.-...+.
T Consensus 301 ~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 301 VNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred cCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 54 2477889999999999999999999876553
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-25 Score=238.04 Aligned_cols=261 Identities=18% Similarity=0.331 Sum_probs=216.3
Q ss_pred cCcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecC
Q 005646 203 QGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 203 ~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~ 282 (686)
...+......++++++++.+++|++|+...... ....+.||.+.|++++|..-+.+|++|+.|.+++|||..++
T Consensus 208 ~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~------i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 208 DHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYL------ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cchhhhheeecCeEEecCCCceeEEeecccceE------EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 334555566788999999999999998654332 12348899999999999887889999999999999999888
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
+ ..+.+.+|...|.++..
T Consensus 282 ~--------------------------------------------------------------C~~~l~gh~stv~~~~~ 299 (537)
T KOG0274|consen 282 E--------------------------------------------------------------CTHSLQGHTSSVRCLTI 299 (537)
T ss_pred c--------------------------------------------------------------EEEEecCCCceEEEEEc
Confidence 7 45667789999999976
Q ss_pred eCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEE
Q 005646 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVT 440 (686)
Q Consensus 363 s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~ 440 (686)
.+ .++++|+.|.+|++|++.++.++.++. |.++|+++..+ +.++++|+.|++|++||+.+++++ .+.+|...|+
T Consensus 300 ~~-~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~ 375 (537)
T KOG0274|consen 300 DP-FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVY 375 (537)
T ss_pred cC-ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEE
Confidence 43 278889999999999999999999999 99999999984 799999999999999999999988 5668999999
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCC-eeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDN-HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~ 519 (686)
++.+.+. ..+++|+.|++|++||+.+. ++.. ....|..-+.++.+.. +.|+++++|++|++||..+.
T Consensus 376 sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~--------tl~~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 376 SLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH--------TLQGHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred EEEecCc-ceEEeeeeccceEeecCCchhhhhh--------hhcCCccccccccccc---ceeEeccccccEEEeecccC
Confidence 9988765 79999999999999999987 4432 2345666677777654 79999999999999986542
Q ss_pred --e-----------eEcCC-CCEEEEEeCCCcEEEEeCCCCC
Q 005646 520 --I-----------GKYKD-GKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 520 --~-----------~~~~d-g~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+ .+..- ...+++++.||.+++||+.++.
T Consensus 444 ~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 444 ECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred ceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCc
Confidence 1 11112 3788999999999999999877
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-25 Score=204.60 Aligned_cols=234 Identities=20% Similarity=0.319 Sum_probs=205.7
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+++++|...|.+++|+.+|.+|++|+.|+++++|++.......
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~------------------------------------- 56 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK------------------------------------- 56 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-------------------------------------
Confidence 6788999999999999999999999999999999997654211
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~ 401 (686)
-...++|.+.|-.++|+|.. .|++++.|++|++||+++++|.........=.-+.
T Consensus 57 -----------------------~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~ 113 (313)
T KOG1407|consen 57 -----------------------ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINIT 113 (313)
T ss_pred -----------------------hhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEE
Confidence 12346899999999999977 99999999999999999999999998666667789
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
|+| ++++++.++.|..|.+.|.++.+.+........+..++|+-++.+++..+..|.|.|.....-+.++ .
T Consensus 114 wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~--------s 184 (313)
T KOG1407|consen 114 WSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ--------S 184 (313)
T ss_pred EcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccc--------c
Confidence 999 9999999999999999999999999888888889999999888888888888999999887544432 2
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc---------------eeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV---------------IGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~---------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.++|.....++.|+| +++++++|++|..+.+||+... +.|+-||++||+||+|..|-|=++.+|
T Consensus 185 i~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 185 IKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred cccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccC
Confidence 466778899999999 8999999999999999997643 567779999999999999999999998
Q ss_pred C
Q 005646 547 E 547 (686)
Q Consensus 547 ~ 547 (686)
.
T Consensus 264 d 264 (313)
T KOG1407|consen 264 D 264 (313)
T ss_pred C
Confidence 7
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-26 Score=210.21 Aligned_cols=230 Identities=21% Similarity=0.330 Sum_probs=197.8
Q ss_pred ceecccCCceEEEEEee---CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeecccccee
Q 005646 244 QEIQAHDGSILTMKFSP---DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fsp---dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (686)
.+..+|+.+|..++||| +|-+|++++.|+.-.+-+=.+|.
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd------------------------------------- 50 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD------------------------------------- 50 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC-------------------------------------
Confidence 45779999999999986 78899999999987665544443
Q ss_pred EEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEE
Q 005646 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTC 399 (686)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~ 399 (686)
-+-+|.||.+.|+....+.+- ..++++.|-+.+|||.-++..+..|.|..-|..
T Consensus 51 -------------------------wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~ 105 (334)
T KOG0278|consen 51 -------------------------WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKA 105 (334)
T ss_pred -------------------------cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeee
Confidence 456788999999999998887 888999999999999999999999999999999
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCc--EEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~ 477 (686)
++|+. |.++|++|+.+..+||||++..+ ...+.+|.+.|..+.|....+.|++++.|++||+||.++++.....+.
T Consensus 106 ~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~- 183 (334)
T KOG0278|consen 106 VAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF- 183 (334)
T ss_pred EEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-
Confidence 99999 99999999999999999998764 457788999999999999889999999999999999999987654332
Q ss_pred eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc--------------eeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV--------------IGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 478 ~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~--------------~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
..+|+++.+++ ++ .+++....+.|.+||..+. ...+|+...+++|++|..++.||+
T Consensus 184 --------~s~VtSlEvs~-dG-~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy 253 (334)
T KOG0278|consen 184 --------NSPVTSLEVSQ-DG-RILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDY 253 (334)
T ss_pred --------CCCCcceeecc-CC-CEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEec
Confidence 25699999998 44 4556667788999996542 456778899999999999999999
Q ss_pred CCCC
Q 005646 544 IGHE 547 (686)
Q Consensus 544 ~~~~ 547 (686)
.+++
T Consensus 254 ~Tge 257 (334)
T KOG0278|consen 254 NTGE 257 (334)
T ss_pred cCCc
Confidence 9987
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-26 Score=209.98 Aligned_cols=229 Identities=17% Similarity=0.309 Sum_probs=192.6
Q ss_pred CCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccC
Q 005646 213 EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 213 ~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
.+.+++++.||.+++||.....+ +.+.++.|+..|.++.|++ +++.+++++-|++|++|+.....
T Consensus 73 e~~~~~a~GDGSLrl~d~~~~s~------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-------- 138 (311)
T KOG0277|consen 73 ENQVIAASGDGSLRLFDLTMPSK------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-------- 138 (311)
T ss_pred cceEEEEecCceEEEeccCCCCc------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc--------
Confidence 45788899999999999654433 3567889999999999998 56678888999999999976543
Q ss_pred CCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEE
Q 005646 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLL 369 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~ 369 (686)
.++++.||..-|...+|+|.. .++
T Consensus 139 ------------------------------------------------------Sv~Tf~gh~~~Iy~a~~sp~~~nlfa 164 (311)
T KOG0277|consen 139 ------------------------------------------------------SVQTFNGHNSCIYQAAFSPHIPNLFA 164 (311)
T ss_pred ------------------------------------------------------ceEeecCCccEEEEEecCCCCCCeEE
Confidence 467788999999999999976 999
Q ss_pred EEECCCcEEEEECCCC-eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE--EEEeccCCcEEEEEEcc
Q 005646 370 SASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRP 446 (686)
Q Consensus 370 s~s~Dg~V~iWd~~~~-~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~--~~~~~~~~~V~~v~~sp 446 (686)
++|.|+++++||++.. +.+....|...|.|+.|+.-+.++++||+.|+.||+||+++-+. ..+.+|.-.|..++|+|
T Consensus 165 s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp 244 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP 244 (311)
T ss_pred EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc
Confidence 9999999999999864 44443339999999999998999999999999999999998653 36678899999999999
Q ss_pred C-CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 447 D-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 447 d-g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
. ...|++++.|-+++|||...+.-. ......|..-+.++.|++.++..++.++-|..++||+.
T Consensus 245 h~~~lLaSasYDmT~riw~~~~~ds~-------~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 245 HHASLLASASYDMTVRIWDPERQDSA-------IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred chhhHhhhccccceEEecccccchhh-------hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 5 457899999999999998754321 12234566779999999999999999999999999984
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=207.49 Aligned_cols=255 Identities=22% Similarity=0.334 Sum_probs=204.7
Q ss_pred cceeeccceEEEEEcCCcccc-----ccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeecc
Q 005646 216 AMFCSKVQRVKVYHCKKRSKE-----LSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 216 l~~g~~d~~v~vw~~~~~~~~-----~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
++.|+....|.=+++....+. ...+.+.-.+++|.++|++++.+ |.|+||||.|-+|+|||+....
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~------- 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK------- 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh-------
Confidence 456777777776766543311 11222334578999999999986 8899999999999999997754
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC---E
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN---Y 367 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~---~ 367 (686)
.+..+-.|.+.|+++.|.++- +
T Consensus 75 -------------------------------------------------------qlg~ll~HagsitaL~F~~~~S~sh 99 (362)
T KOG0294|consen 75 -------------------------------------------------------QLGILLSHAGSITALKFYPPLSKSH 99 (362)
T ss_pred -------------------------------------------------------hhcceeccccceEEEEecCCcchhh
Confidence 234445699999999999876 9
Q ss_pred EEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEcc
Q 005646 368 LLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP 446 (686)
Q Consensus 368 L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp 446 (686)
|++|+.||.|.+|+...-.++..+. |.+.|+.++.+| .+++-++.+.|+.+|+||+-+++.-.........+.|.|+|
T Consensus 100 LlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~ 178 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP 178 (362)
T ss_pred eeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC
Confidence 9999999999999999999999998 999999999999 99999999999999999999998877777777777899999
Q ss_pred CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-------
Q 005646 447 DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------- 519 (686)
Q Consensus 447 dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~------- 519 (686)
.|.+++++..+ .|-+|.+.+.++...... ..++.++.|. ++..|++|..|+.|++||....
T Consensus 179 ~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~---------~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~~ 246 (362)
T KOG0294|consen 179 QGDHFVVSGRN-KIDIYQLDNASVFREIEN---------PKRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEFL 246 (362)
T ss_pred CCCEEEEEecc-EEEEEecccHhHhhhhhc---------cccceeeeec--CCceEEEecCCceEEEeccCCCccceeee
Confidence 99999888664 699999887665432211 1346666665 5789999999999999997632
Q ss_pred --------eeE--cCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 520 --------IGK--YKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 520 --------~~~--~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.+ .|++.||+|+|.||.|+|||++...
T Consensus 247 AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 247 AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred cchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 111 2378899999999999999998764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=211.64 Aligned_cols=275 Identities=14% Similarity=0.220 Sum_probs=211.0
Q ss_pred cceeeecCCCccceeeccceEEEEEcCC-----ccc------cccccccCceecccCCceEEEEEeeCCCEEEEEeCCCc
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKK-----RSK------ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGV 273 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~-----~~~------~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 273 (686)
.+.+|+++|..+++|+.|-.|+|.|+.. ..+ ........++|..|..+|+++.|+|....|++|+.|++
T Consensus 116 R~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~t 195 (430)
T KOG0640|consen 116 RAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNT 195 (430)
T ss_pred eeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCe
Confidence 3567999999999999999999999862 011 11122334678899999999999999999999999999
Q ss_pred EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccC
Q 005646 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (686)
Q Consensus 274 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 353 (686)
|+++|+......+.++ ....
T Consensus 196 vKlFDfsK~saKrA~K------------------------------------------------------------~~qd 215 (430)
T KOG0640|consen 196 VKLFDFSKTSAKRAFK------------------------------------------------------------VFQD 215 (430)
T ss_pred EEEEecccHHHHHHHH------------------------------------------------------------Hhhc
Confidence 9999986543211111 1123
Q ss_pred CCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
..+|.+++|+|.| +|+.|..-.++++||+.+.+|...-. |.+.|+++.+++ ++++.++|+.||.|+|||--+++
T Consensus 216 ~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~r 294 (430)
T KOG0640|consen 216 TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNR 294 (430)
T ss_pred cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHH
Confidence 4689999999999 99999999999999999999976653 999999999999 99999999999999999999999
Q ss_pred EEEEec--c-CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE
Q 005646 429 VVDWVD--I-RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (686)
Q Consensus 429 ~~~~~~--~-~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~ 505 (686)
++..++ | ...|.+..|+.+|+++++.+.|..+++|.+.+++....-.-.... +...--+...|+. ...+++.-
T Consensus 295 Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~t---grq~~rtqAvFNh-tEdyVl~p 370 (430)
T KOG0640|consen 295 CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTT---GRQKHRTQAVFNH-TEDYVLFP 370 (430)
T ss_pred HHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcc---cchhhhhhhhhcC-ccceEEcc
Confidence 886553 3 456999999999999999999999999999998875432111000 1111123334554 33444433
Q ss_pred -eCCCcEEEEeCCc----------------ceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 506 -CADSQVRILQGPN----------------VIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 506 -s~D~~I~iwd~~~----------------~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
-..+.+.-||..+ .+.-+|.+.-++|++.|..+++|--.
T Consensus 371 DEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 371 DEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 3456777787543 25567899999999999999999753
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-26 Score=224.75 Aligned_cols=230 Identities=21% Similarity=0.422 Sum_probs=200.1
Q ss_pred eecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEe
Q 005646 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (686)
.+..|.+.+..+.|-++...|+|||.|..|++|++...+.
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------------------------------- 209 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------------------------------- 209 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh----------------------------------------
Confidence 4678999999999999988999999999999999865541
Q ss_pred eccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEE
Q 005646 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402 (686)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~f 402 (686)
..+.++.|..+.|+.+.|.+++ ++++++.|+.+++|++...+...++. |.+.|+++.|
T Consensus 210 --------------------~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~ 269 (459)
T KOG0288|consen 210 --------------------ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKF 269 (459)
T ss_pred --------------------hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehh
Confidence 2345677888999999999999 99999999999999999999999998 9999999999
Q ss_pred eecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc
Q 005646 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482 (686)
Q Consensus 403 sp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 482 (686)
.. ....+++|+.|.+|++||+....+....-....+..|+.+ +..+++|-.|++|++||.+........+
T Consensus 270 ~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~------- 339 (459)
T KOG0288|consen 270 KL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP------- 339 (459)
T ss_pred hc-cccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEee-------
Confidence 87 6666999999999999999998888766666777777776 5578899999999999998877654322
Q ss_pred cCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-------------------ceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-------------------VIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 483 ~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-------------------~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
-.+.|+++..++ ++..|++.+.|..+.++|+.+ -+.|+|++.|+++||.||.|+||++
T Consensus 340 --~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 340 --LGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred --cCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence 225799999999 888888999999999999753 3779999999999999999999999
Q ss_pred CCCC
Q 005646 544 IGHE 547 (686)
Q Consensus 544 ~~~~ 547 (686)
.+++
T Consensus 417 ~tgK 420 (459)
T KOG0288|consen 417 FTGK 420 (459)
T ss_pred cCce
Confidence 9987
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-25 Score=221.61 Aligned_cols=312 Identities=19% Similarity=0.278 Sum_probs=230.4
Q ss_pred HHhhccchhhHHHHHHhHHhhcccceeeecccCcceeeecCCCccce------eeccceEEEEEcCCccccccccccCce
Q 005646 172 VEKESSAAGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMF------CSKVQRVKVYHCKKRSKELSALYKGQE 245 (686)
Q Consensus 172 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~------g~~d~~v~vw~~~~~~~~~~~~~~~~~ 245 (686)
+...++..+|++|+.+.|+.+++...- .+.+... .+.+.++. .-..|+++-.-..+-..... ...+.
T Consensus 65 e~~~Eta~ekr~RlA~e~L~~i~e~~E---~~~d~~~--~~~e~va~rLked~le~~Gr~~r~~a~~v~~~~s--~~~~~ 137 (479)
T KOG0299|consen 65 EFEEETAGEKRLRLAEEYLDEIREIEE---DNFDADD--LDDELVASRLKEDVLEQSGRVRRLVADKVQAPES--SDFRV 137 (479)
T ss_pred cchhcchhHHHHHHHHHHHHHHHhhhh---cccccch--hhHHHHHHHHHHHHHHhcceeehhhhhhcccccc--cccee
Confidence 334577889999999999999862111 1111111 11111111 11233343332222111111 11345
Q ss_pred ecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEee
Q 005646 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (686)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (686)
+..|.-+|++|+++|++.++++++.||+|.-|++.+++....+--..
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~--------------------------------- 184 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD--------------------------------- 184 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc---------------------------------
Confidence 67899999999999999999999999999999999887442111000
Q ss_pred ccCCceEEEeCCccccccCCCeEEe-ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEE
Q 005646 326 RTSESACVVFPPKVFRILEKPLHEF-HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402 (686)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~f 402 (686)
.+......+...- ++|...|.+++.+++| +|++|+.|..|.||+.++.+.++.+. |.+.|.+++|
T Consensus 185 ------------ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~f 252 (479)
T KOG0299|consen 185 ------------EVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAF 252 (479)
T ss_pred ------------hhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeee
Confidence 0000000111111 4899999999999999 99999999999999999999999988 9999999999
Q ss_pred eecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 403 NPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 403 sp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
-. ..+.+++++.|++|++|++.....+ .+++|+..|.+|....-++.+-+|+.|+++++|++...... .
T Consensus 253 r~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql---------i 322 (479)
T KOG0299|consen 253 RK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL---------I 322 (479)
T ss_pred ec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccccee---------e
Confidence 88 7788999999999999999987766 78899999999999988989999999999999999544322 1
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------------------cceeEcCCCCEEEEEeC
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP---------------------------NVIGKYKDGKHIVSAGE 534 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~---------------------------~~~~~~~dg~~l~sgs~ 534 (686)
..++.+.+-+++|-. ...+++|+.+|.|.+|+.. +.++..|...++++|+.
T Consensus 323 frg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~ 400 (479)
T KOG0299|consen 323 FRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW 400 (479)
T ss_pred eeCCCCCeeeEEEec--ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCC
Confidence 344567899999985 5799999999999999843 23556668899999999
Q ss_pred CCcEEEEeCCCCC
Q 005646 535 DSNVYMWNCIGHE 547 (686)
Q Consensus 535 Dg~V~iWd~~~~~ 547 (686)
+|.|++|.+..+-
T Consensus 401 ~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 401 SGCVRLWKIEDGL 413 (479)
T ss_pred CCceEEEEecCCc
Confidence 9999999999874
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=219.32 Aligned_cols=229 Identities=21% Similarity=0.296 Sum_probs=193.9
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
-.+|+.||..+++|...|.|+|+|++.... ...+++|+.+|..+.|+|. +..|++|+.|+.+++||+.+...
T Consensus 73 s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i-------LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v 145 (487)
T KOG0310|consen 73 SVDFRSDGRLLAAGDESGHVKVFDMKSRVI-------LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV 145 (487)
T ss_pred EEEeecCCeEEEccCCcCcEEEeccccHHH-------HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE
Confidence 357888999999999999999999543211 2567889999999999994 66788999999999999987651
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
...+.+|++.|.|.+|+|
T Consensus 146 --------------------------------------------------------------~~~l~~htDYVR~g~~~~ 163 (487)
T KOG0310|consen 146 --------------------------------------------------------------QAELSGHTDYVRCGDISP 163 (487)
T ss_pred --------------------------------------------------------------EEEecCCcceeEeecccc
Confidence 245678999999999999
Q ss_pred CC--EEEEEECCCcEEEEECCCC-eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc-EE-EEeccCCcE
Q 005646 365 NN--YLLSASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VV-DWVDIRQIV 439 (686)
Q Consensus 365 ~~--~L~s~s~Dg~V~iWd~~~~-~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-~~-~~~~~~~~V 439 (686)
.. .++|||.||+|++||++.. ..+..+.|..+|..+.|-| .+.+|++++. ..|++||+.+|. .+ ....|...|
T Consensus 164 ~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtV 241 (487)
T KOG0310|consen 164 ANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTV 241 (487)
T ss_pred CCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcCC-CeEEEEEecCCceehhhhhcccceE
Confidence 76 8999999999999999987 7888899999999999999 8899999884 579999999554 44 344599999
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 440 ~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
||+++..+++.|++|+-|+.+++||+.+.+...... -.++|.+++.+| +...+++|-.||.+.+-+
T Consensus 242 TcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~---------~~~pvLsiavs~-dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK---------YPGPVLSIAVSP-DDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred EEEEeecCCceEeecccccceEEEEccceEEEEeee---------cccceeeEEecC-CCceEEEecccceeeeeh
Confidence 999999999999999999999999987766554221 236799999999 789999999999887764
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-25 Score=220.80 Aligned_cols=260 Identities=18% Similarity=0.295 Sum_probs=197.5
Q ss_pred eecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEe
Q 005646 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (686)
.+++|+..|.++++.|.|..|+|||.|.+|++||++.......
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~------------------------------------- 204 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMR------------------------------------- 204 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccch-------------------------------------
Confidence 4678999999999999999999999999999999976431000
Q ss_pred eccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEe------------
Q 005646 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF------------ 391 (686)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~------------ 391 (686)
.| +.+... ....|.+++|++.+ .|+..+.....+|+|-.....+...
T Consensus 205 --------------~f----r~l~P~--E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nT 264 (641)
T KOG0772|consen 205 --------------SF----RQLQPC--ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNT 264 (641)
T ss_pred --------------hh----hccCcc--cccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhcc
Confidence 00 112222 33478999999999 8888888889999997655443332
Q ss_pred -eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE-EEEe------ccCCcEEEEEEccCCCEEEEEecCCcEEEE
Q 005646 392 -PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-VDWV------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463 (686)
Q Consensus 392 -~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~-~~~~------~~~~~V~~v~~spdg~~l~~gs~dg~i~iw 463 (686)
.|...++|.+|+|.+.+.|+|++.||++||||+.+.+. ...+ +.+-+++.++|+|||+.||+|+.||.|.+|
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW 344 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence 38889999999998889999999999999999986542 2222 234568999999999999999999999999
Q ss_pred eCCCCeeeeeeeEEeeccccCCCC--CeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc------------------ceeEc
Q 005646 464 NVSDNHLELDAEICVHSKKKAPCK--RITGFQFLPQDSSKVMVSCADSQVRILQGPN------------------VIGKY 523 (686)
Q Consensus 464 d~~~~~~~~~~~~~~~~~~~~~~~--~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~------------------~~~~~ 523 (686)
+........ ....+.+|.. .|+++.|++ ++++|++-+.|+++++||+.+ .++|+
T Consensus 345 ~~~~~~v~p-----~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 345 DKGSRTVRP-----VMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS 418 (641)
T ss_pred ecCCccccc-----ceEeeeccCCCCceeEEEecc-ccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC
Confidence 985433221 1122456655 899999999 999999999999999999753 37899
Q ss_pred CCCCEEEEEeC------CCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCC
Q 005646 524 KDGKHIVSAGE------DSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGL 576 (686)
Q Consensus 524 ~dg~~l~sgs~------Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~ 576 (686)
|+.++|+||.. -|++++||..+-. .+..+ .+....++.+.|+..
T Consensus 419 Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d--------~v~ki-~i~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 419 PDDKLILTGTSAPNGMTAGTLFFFDRMTLD--------TVYKI-DISTASVVRCLWHPK 468 (641)
T ss_pred CCceEEEecccccCCCCCceEEEEecccee--------eEEEe-cCCCceEEEEeecch
Confidence 99999999963 5789999987644 12111 122355677777743
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-23 Score=188.11 Aligned_cols=271 Identities=17% Similarity=0.227 Sum_probs=194.6
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCcccc----ccccc----cCceecccCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKE----LSALY----KGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~----~~~~~----~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~v 276 (686)
....|.+.|...+.|+...+.+|..+....+. ....+ ....-+.|++.|.|.+|+|+|++||||+.|++|++
T Consensus 36 rav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~ 115 (350)
T KOG0641|consen 36 RAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKV 115 (350)
T ss_pred eeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEE
Confidence 34678899999999999999999877542211 01111 12234679999999999999999999999999999
Q ss_pred EEeecCeee-----eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEec
Q 005646 277 WQVVEDERL-----TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351 (686)
Q Consensus 277 Wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 351 (686)
-.++...+. .+++.++..+.-+.|.......- .+....+.++..+++.+.. .+++++.+.
T Consensus 116 l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~-----------~il~s~gagdc~iy~tdc~----~g~~~~a~s 180 (350)
T KOG0641|consen 116 LPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGG-----------AILASAGAGDCKIYITDCG----RGQGFHALS 180 (350)
T ss_pred EecccccccccCcceeeeecCCceeeeEEecCCCcCc-----------eEEEecCCCcceEEEeecC----CCCcceeec
Confidence 876543321 23333333333333333322221 1111122222222222222 146789999
Q ss_pred cCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee---C-----CCCeEEEEEeecCCCEEEEEEcCCcEEEE
Q 005646 352 GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---H-----SNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h-----~~~V~~v~fsp~~~~~l~sgs~Dg~V~iw 422 (686)
||++.|..+- +=++ .+++|+.|++|++||++-..|+.++. | ...|.+++..| .+++|++|..|....+|
T Consensus 181 ghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 181 GHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSSCMLY 258 (350)
T ss_pred CCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCceEEE
Confidence 9999999984 3345 99999999999999999999998885 3 36799999999 99999999999999999
Q ss_pred ecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 423 AVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 423 d~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
|++.++.+ .+..|...|.++.|+|.-.++++++.|..|++-|+...-. ....+.+ ...|..++..+.|+|
T Consensus 259 dirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla-~el~~~v---v~ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA-HELPIMV---VAEHKDKAIQCRWHP 329 (350)
T ss_pred EeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchh-hcCceEE---EEeccCceEEEEecC
Confidence 99999887 5667899999999999999999999999999999975422 1111111 123556778888988
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=219.73 Aligned_cols=277 Identities=17% Similarity=0.196 Sum_probs=207.8
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
..+.+.|..+++|+.|..|+.||+..-...+......+.. -...|.++.|++.|..|+..+....++|+|-...+...
T Consensus 173 l~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~--E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e 250 (641)
T KOG0772|consen 173 LAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPC--ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVE 250 (641)
T ss_pred eeecCCCceeeeccccceEEEEecccccccchhhhccCcc--cccccceeeecCCCCeEEEEecCcceeEEccCCceeee
Confidence 4456778899999999999999998765544443333333 34469999999999988888888899999965444222
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~ 366 (686)
..+.... + .-+..-+||...++|.+|+|..
T Consensus 251 ~~KGDQY---------------------------I-----------------------~Dm~nTKGHia~lt~g~whP~~ 280 (641)
T KOG0772|consen 251 FSKGDQY---------------------------I-----------------------RDMYNTKGHIAELTCGCWHPDN 280 (641)
T ss_pred eeccchh---------------------------h-----------------------hhhhccCCceeeeeccccccCc
Confidence 2221100 0 1123447899999999999987
Q ss_pred --EEEEEECCCcEEEEECCCC-eeeeEee------CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE----EEe
Q 005646 367 --YLLSASIDKTVRLWRVGND-HCLRVFP------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV----DWV 433 (686)
Q Consensus 367 --~L~s~s~Dg~V~iWd~~~~-~~~~~~~------h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~----~~~ 433 (686)
.++|++.||++||||+... +.+.++. ..-.++.++|+| ++++||+|..||.|.+|+.....+. ...
T Consensus 281 k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~ 359 (641)
T KOG0772|consen 281 KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKD 359 (641)
T ss_pred ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeee
Confidence 9999999999999999765 3455554 335789999999 9999999999999999998654321 222
Q ss_pred ccCC--cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC----
Q 005646 434 DIRQ--IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA---- 507 (686)
Q Consensus 434 ~~~~--~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~---- 507 (686)
.|.. .|++|+|++||++|++-+.|+++++||++..+..+.....+. ...+-+.++|+| +.++|++|..
T Consensus 360 AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~-----t~~~~tdc~FSP-d~kli~TGtS~~~~ 433 (641)
T KOG0772|consen 360 AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLP-----TPFPGTDCCFSP-DDKLILTGTSAPNG 433 (641)
T ss_pred ccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCC-----ccCCCCccccCC-CceEEEecccccCC
Confidence 4544 799999999999999999999999999987665443222222 224567899999 7788888753
Q ss_pred --CCcEEEEeCCcc---------------eeEcCCCCEEEEEeCCCcEEEEe
Q 005646 508 --DSQVRILQGPNV---------------IGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 508 --D~~I~iwd~~~~---------------~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
.+.+.+||..+. +.|+|.-+.|+.|+.||+++||=
T Consensus 434 ~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 434 MTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 467899985532 56888888899999999999973
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=215.09 Aligned_cols=267 Identities=21% Similarity=0.299 Sum_probs=213.2
Q ss_pred cccCcce--eeecCCCccceeeccceEEEEEcCCcccc---ccc------cccCcee--cccCCceEEEEEeeCCCEEEE
Q 005646 201 DKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKE---LSA------LYKGQEI--QAHDGSILTMKFSPDGQYLAS 267 (686)
Q Consensus 201 ~~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~---~~~------~~~~~~l--~~H~~~I~~l~fspdg~~Las 267 (686)
.|+-.++ .+++++.+.++++.+++|.=|+.....+. ... .+..-.. ++|...|.+++.++||+||||
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 4455554 45677789999999999999998654322 111 1111111 389999999999999999999
Q ss_pred EeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCe
Q 005646 268 AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPL 347 (686)
Q Consensus 268 gs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (686)
|+.|..|.||+..+.+ ++
T Consensus 220 gg~d~~v~Iw~~~t~e--------------------------------------------------------------hv 237 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLE--------------------------------------------------------------HV 237 (479)
T ss_pred cCCCceEEEecCcccc--------------------------------------------------------------hh
Confidence 9999999999998876 55
Q ss_pred EEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 348 HEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 348 ~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
+.+.+|.+.|.+++|-..- .|++++.|++|++|+++....+.++- |++.|..|.-.. -++.+-+|+.|+++++|++.
T Consensus 238 ~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ 316 (479)
T KOG0299|consen 238 KVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIP 316 (479)
T ss_pred hcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc-ccceEEeccccceeEEEecc
Confidence 6678999999999997665 99999999999999999888777655 999999998876 67777777799999999998
Q ss_pred CCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc----cCCCCCeEEEEEeCCCCCe
Q 005646 426 SCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK----KAPCKRITGFQFLPQDSSK 501 (686)
Q Consensus 426 ~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~I~~l~fsp~~~~~ 501 (686)
....+.+.++.+.+-|++|-.+ ..+++|+.+|.|.+|++...++.+.....-.-.. ..+..+|++++..| ...+
T Consensus 317 eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL 394 (479)
T KOG0299|consen 317 EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDL 394 (479)
T ss_pred ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc-cCce
Confidence 8878888889889999999765 4789999999999999988877664433211111 11224899999999 8899
Q ss_pred EEEEeCCCcEEEEeCC------------------cceeEcCCCCEEEEE
Q 005646 502 VMVSCADSQVRILQGP------------------NVIGKYKDGKHIVSA 532 (686)
Q Consensus 502 l~~~s~D~~I~iwd~~------------------~~~~~~~dg~~l~sg 532 (686)
+++|+.+|.||+|-.. +.++|+++|++|++|
T Consensus 395 ~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 395 LASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred EEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 9999999999999743 346788899977665
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=230.78 Aligned_cols=245 Identities=19% Similarity=0.295 Sum_probs=193.1
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCcc----------------------------c--------------c
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRS----------------------------K--------------E 236 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~----------------------------~--------------~ 236 (686)
.|++.+ ..|+++|.+||+|+.|+.|+||.+.... . +
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 345554 6789999999999999999999976500 0 0
Q ss_pred ccc-----------cccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCC
Q 005646 237 LSA-----------LYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305 (686)
Q Consensus 237 ~~~-----------~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (686)
... -.+.+.|.||.+.|.+|.||.++ +|+|++.|.+||+|++...+++..+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F----------------- 406 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF----------------- 406 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-----------------
Confidence 000 01224678999999999999875 8999999999999999876654433
Q ss_pred CCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECC
Q 005646 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVG 383 (686)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~ 383 (686)
.|...|+|++|+|-+ ++++|+-|+.||||++.
T Consensus 407 ----------------------------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~ 440 (712)
T KOG0283|consen 407 ----------------------------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS 440 (712)
T ss_pred ----------------------------------------------ecCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence 299999999999965 99999999999999999
Q ss_pred CCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec---c------CCcEEEEEEccC-CCEEEE
Q 005646 384 NDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---I------RQIVTAVCYRPD-GQGGIV 453 (686)
Q Consensus 384 ~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~---~------~~~V~~v~~spd-g~~l~~ 453 (686)
..+.+.-..-..-|++++|.| +|++.+.|+.+|.+++|+....+++.... + ...||.+.|.|. ...+++
T Consensus 441 d~~Vv~W~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 441 DKKVVDWNDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred cCeeEeehhhhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 888776666669999999999 99999999999999999999887663221 1 226999999984 346888
Q ss_pred EecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 454 GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 454 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
.+.|..|||||.++..+..... + ......-...+|+. +++.|++++.|..|+||+..
T Consensus 520 TSnDSrIRI~d~~~~~lv~KfK----G--~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 520 TSNDSRIRIYDGRDKDLVHKFK----G--FRNTSSQISASFSS-DGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ecCCCceEEEeccchhhhhhhc----c--cccCCcceeeeEcc-CCCEEEEeecCceEEEEeCC
Confidence 8999999999997766543221 1 11122345678888 99999999999999999963
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-24 Score=223.56 Aligned_cols=238 Identities=18% Similarity=0.315 Sum_probs=203.1
Q ss_pred Ccceee--ecCCCccceeeccceEEEEEcCCccccccccccCceecc-cCCceEEEEEeeCCCEEEEEeCCCcEEEEEee
Q 005646 204 GEGERV--RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQA-HDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (686)
Q Consensus 204 ~~~~~~--s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~-H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~ 280 (686)
..++++ +++|.+|++|..+|.|.|||...... ...+.+ |...|-+++|. +..|.+|+.|+.|..+|+.
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-------~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR 288 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-------TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVR 288 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhccc-------cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEe
Confidence 345444 56688999999999999998765433 345666 99999999998 6689999999999999998
Q ss_pred cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
..+.. ...+.+|...|..+
T Consensus 289 ~~~~~-------------------------------------------------------------~~~~~~H~qeVCgL 307 (484)
T KOG0305|consen 289 ISQHV-------------------------------------------------------------VSTLQGHRQEVCGL 307 (484)
T ss_pred cchhh-------------------------------------------------------------hhhhhcccceeeee
Confidence 76521 12367899999999
Q ss_pred EeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEE--cCCcEEEEecCCCcEEEEeccC
Q 005646 361 SWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS--IDGKVRIWAVLSCHVVDWVDIR 436 (686)
Q Consensus 361 ~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs--~Dg~V~iwd~~~~~~~~~~~~~ 436 (686)
+|++++ +||+|+.|+.+.|||.....++..+. |...|.+++|+|....+||+|+ .|++|++||..++..+......
T Consensus 308 kws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg 387 (484)
T KOG0305|consen 308 KWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG 387 (484)
T ss_pred EECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC
Confidence 999999 99999999999999997777776666 9999999999998899999975 6999999999999999999999
Q ss_pred CcEEEEEEccCCCEEEE--EecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 005646 437 QIVTAVCYRPDGQGGIV--GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~--gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iw 514 (686)
..|+.|.|++..+.|++ |..++.|.||+..+.+... ...+|..+|..++++|
T Consensus 388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~--------~l~gH~~RVl~la~SP------------------ 441 (484)
T KOG0305|consen 388 SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVA--------ELLGHTSRVLYLALSP------------------ 441 (484)
T ss_pred CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceee--------eecCCcceeEEEEECC------------------
Confidence 99999999999877776 5567889999998744332 3567889999999999
Q ss_pred eCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 515 QGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 515 d~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
||..|++|+.|.++++|++-+..
T Consensus 442 ----------dg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 442 ----------DGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred ----------CCCEEEEecccCcEEeccccCCC
Confidence 89999999999999999998853
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-23 Score=197.20 Aligned_cols=238 Identities=15% Similarity=0.241 Sum_probs=184.1
Q ss_pred ceeeecCC-CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 206 GERVRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 206 ~~~~s~~~-~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
..+|++.. ..++.++-|++|++|++..... +.......|.++|.+++|+.||..+++|+.|+.+++||+.+++
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-----~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q- 105 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-----LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ- 105 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCc-----ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-
Confidence 45677744 4556899999999998876321 2234456799999999999999999999999999999999876
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
+..+..|.++|.++.|-+
T Consensus 106 --------------------------------------------------------------~~~v~~Hd~pvkt~~wv~ 123 (347)
T KOG0647|consen 106 --------------------------------------------------------------VSQVAAHDAPVKTCHWVP 123 (347)
T ss_pred --------------------------------------------------------------eeeeeecccceeEEEEec
Confidence 344567999999999987
Q ss_pred CC---EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE---EEeccCCc
Q 005646 365 NN---YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV---DWVDIRQI 438 (686)
Q Consensus 365 ~~---~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~---~~~~~~~~ 438 (686)
.. .|+|||.|++|+.||++...++.++.....|.++.. -..+++.+..++.|.+|+++++... .....+-.
T Consensus 124 ~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv---~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q 200 (347)
T KOG0647|consen 124 GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV---LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQ 200 (347)
T ss_pred CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc---cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccce
Confidence 54 899999999999999999999999999999999886 4578899999999999999877543 12235667
Q ss_pred EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccC---CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA---PCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 439 V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
+.+|+..+|....+.|+..|.+-|..+..+.......+..|..... ....|++++|+| .-..|++++.||++.+||
T Consensus 201 ~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 201 TRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred eeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEEEec
Confidence 8999999999999999999999999998865444444444443221 123567788888 444445555555555554
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=200.21 Aligned_cols=247 Identities=19% Similarity=0.329 Sum_probs=203.0
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
-+..|..|.|+|.++.|+.++.||++++|++........
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~----------------------------------------- 50 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK----------------------------------------- 50 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh-----------------------------------------
Confidence 356899999999999999999999999999976542221
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCC
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDN 408 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~ 408 (686)
..|..++++++|.++..+++|+.||.|+++|+.++.....-.|..+|.||.+++ ..+
T Consensus 51 ----------------------~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~-~~~ 107 (323)
T KOG1036|consen 51 ----------------------FKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY-EVG 107 (323)
T ss_pred ----------------------eecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeec-cCC
Confidence 138899999999998899999999999999999999888888999999999999 888
Q ss_pred EEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCC
Q 005646 409 YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (686)
Q Consensus 409 ~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 488 (686)
.+++|+.|++|++||.+....+........|.++.. .|..|++|+.+..+.+||+++....... ....-.-.
T Consensus 108 ~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~------reS~lkyq 179 (323)
T KOG1036|consen 108 CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQR------RESSLKYQ 179 (323)
T ss_pred eEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhh------ccccceeE
Confidence 999999999999999998777766666677877665 5679999999999999999887654311 11122245
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEe----------------------------CCcceeEcCCCCEEEEEeCCCcEEE
Q 005646 489 ITGFQFLPQDSSKVMVSCADSQVRILQ----------------------------GPNVIGKYKDGKHIVSAGEDSNVYM 540 (686)
Q Consensus 489 I~~l~fsp~~~~~l~~~s~D~~I~iwd----------------------------~~~~~~~~~dg~~l~sgs~Dg~V~i 540 (686)
+.++++.| ++.-.++++-||+|.+=. ..+.++|+|-.+.||||+.||.|.+
T Consensus 180 tR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~ 258 (323)
T KOG1036|consen 180 TRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI 258 (323)
T ss_pred EEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEE
Confidence 88999999 888889999999988743 2355889999999999999999999
Q ss_pred EeCCCCCCCCccccccccccccccC-CcEEEecCCCC
Q 005646 541 WNCIGHEEPAHDQAKTIRSLERFTT-NASIAIPWCGL 576 (686)
Q Consensus 541 Wd~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~s~~g~ 576 (686)
||+.+.+ .++.+..+.. +.+++|+-+|.
T Consensus 259 Wd~~~rK--------rl~q~~~~~~SI~slsfs~dG~ 287 (323)
T KOG1036|consen 259 WDLFNRK--------RLKQLAKYETSISSLSFSMDGS 287 (323)
T ss_pred ccCcchh--------hhhhccCCCCceEEEEeccCCC
Confidence 9998865 6666666644 67777777644
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-24 Score=220.78 Aligned_cols=239 Identities=18% Similarity=0.315 Sum_probs=199.3
Q ss_pred cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeecc
Q 005646 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 211 ~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
+++++|++|+.||.|++|+......+.+..+ ...++.|...|..|....+|+.|+++|.|-+|++|+...+..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~-~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~------ 107 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPY-IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT------ 107 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccch-hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc------
Confidence 4566899999999999999876555443332 356888999999999999999999999999999999865420
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe-eCCC-EE
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW-SKNN-YL 368 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~-s~~~-~L 368 (686)
-...++..|.+.|.||++ .++. ++
T Consensus 108 ------------------------------------------------------~c~stir~H~DYVkcla~~ak~~~lv 133 (735)
T KOG0308|consen 108 ------------------------------------------------------FCMSTIRTHKDYVKCLAYIAKNNELV 133 (735)
T ss_pred ------------------------------------------------------hhHhhhhcccchheeeeecccCceeE
Confidence 133456679999999999 6666 99
Q ss_pred EEEECCCcEEEEECCCCe--eeeEe----------eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE-EEEecc
Q 005646 369 LSASIDKTVRLWRVGNDH--CLRVF----------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-VDWVDI 435 (686)
Q Consensus 369 ~s~s~Dg~V~iWd~~~~~--~~~~~----------~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~-~~~~~~ 435 (686)
|+|+-|+.|.|||+.++. .+..+ ++...|++++.++ ++..|++|+..+.||+||.++++. +.+.+|
T Consensus 134 aSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGH 212 (735)
T KOG0308|consen 134 ASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH 212 (735)
T ss_pred EecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeecc
Confidence 999999999999999873 23222 2678899999999 889999999999999999999864 478899
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
...|.++..++||+.+++++.||+|++||+...+++.. ...|...|.+++.+|
T Consensus 213 TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T--------~~vH~e~VWaL~~~~------------------- 265 (735)
T KOG0308|consen 213 TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT--------YIVHKEGVWALQSSP------------------- 265 (735)
T ss_pred ccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee--------EEeccCceEEEeeCC-------------------
Confidence 99999999999999999999999999999988777653 223446699999888
Q ss_pred CCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 516 GPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 516 ~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+-.++.+|+.||.|+.=|+.+..
T Consensus 266 ---------sf~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 266 ---------SFTHVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred ---------CcceEEecCCCCcEEecccCCch
Confidence 77889999999999998888753
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-22 Score=202.99 Aligned_cols=323 Identities=19% Similarity=0.256 Sum_probs=234.9
Q ss_pred ceeeecCC-CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 206 GERVRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 206 ~~~~s~~~-~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
+.++.+.+ ..+++|..+|.|.||+-..... .+...+|.+.|.+++.-.+|. |+||+.|+.|..|| ..-+.
T Consensus 249 Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~-------~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k 319 (626)
T KOG2106|consen 249 VLCVTFLENGDVITGDSGGNILIWSKGTNRI-------SKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRK 319 (626)
T ss_pred EEEEEEcCCCCEEeecCCceEEEEeCCCceE-------EeEeeecCCceEEEEEecCcc-EeecCccceEEecc-ccccc
Confidence 44444444 3678999999999998643221 223348999999999999996 55599999999999 55566
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
+++.++++.....-....+... +........++.. .+.........+|....+.++.+|
T Consensus 320 ~r~~elPe~~G~iRtv~e~~~d----i~vGTtrN~iL~G-----------------t~~~~f~~~v~gh~delwgla~hp 378 (626)
T KOG2106|consen 320 LRETELPEQFGPIRTVAEGKGD----ILVGTTRNFILQG-----------------TLENGFTLTVQGHGDELWGLATHP 378 (626)
T ss_pred cccccCchhcCCeeEEecCCCc----EEEeeccceEEEe-----------------eecCCceEEEEecccceeeEEcCC
Confidence 6666666543322222222221 1111111111100 011123456678999999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEE
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVC 443 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~ 443 (686)
+. +|++++.|+.++||+ ..+++.+..-..++.|+.|+| .+ .++.|...|...+.|.++..++......++++++.
T Consensus 379 s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ 454 (626)
T KOG2106|consen 379 SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVR 454 (626)
T ss_pred ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEecCCceEEEE
Confidence 98 999999999999999 677777777889999999999 77 99999999999999999988887766699999999
Q ss_pred EccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc----
Q 005646 444 YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV---- 519 (686)
Q Consensus 444 ~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~---- 519 (686)
|+|+|.+||+|+.|+.|+||-++.+....... .+-+..+|+.+.|++ |++++.+.+.|-.|-.|....+
T Consensus 455 ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~------~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~~~~~~t 527 (626)
T KOG2106|consen 455 YSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV------GKCSGSPITHLDWSS-DSQFLVSNSGDYEILYWKPSECKQIT 527 (626)
T ss_pred EcCCCCEEEEecCCCeEEEEEECCCCcEEEEe------eeecCceeEEeeecC-CCceEEeccCceEEEEEccccCcccc
Confidence 99999999999999999999998776544322 222338899999999 8999999999999999954322
Q ss_pred -----------------------------eeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccC-CcEE
Q 005646 520 -----------------------------IGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTT-NASI 569 (686)
Q Consensus 520 -----------------------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~v 569 (686)
++.+.+.+.||+|.+.|.|++|...--. ...+...+..+.. ...+
T Consensus 528 s~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s-----~rA~~he~~ghs~~vt~V 602 (626)
T KOG2106|consen 528 SVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSS-----PRAPSHEYGGHSSHVTNV 602 (626)
T ss_pred eecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCC-----CcccceeeccccceeEEE
Confidence 1222378899999999999999875432 1122333444444 5566
Q ss_pred EecCC
Q 005646 570 AIPWC 574 (686)
Q Consensus 570 ~~s~~ 574 (686)
+|.|.
T Consensus 603 ~Fl~~ 607 (626)
T KOG2106|consen 603 AFLCK 607 (626)
T ss_pred EEeeC
Confidence 66555
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-23 Score=196.33 Aligned_cols=228 Identities=23% Similarity=0.380 Sum_probs=186.3
Q ss_pred cCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecC-eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 249 HDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVED-ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 249 H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
-...|.+|+||| ...+|+.++.|++||+|+++.. ...
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~----------------------------------------- 64 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV----------------------------------------- 64 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCccc-----------------------------------------
Confidence 467899999999 5567778999999999999863 210
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeec
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPV 405 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~ 405 (686)
+ .....|.++|++++|+.+| .+++|+.|+.+++||+.+++....-.|.++|.++.|-+
T Consensus 65 -------------------~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~- 123 (347)
T KOG0647|consen 65 -------------------P-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP- 123 (347)
T ss_pred -------------------c-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec-
Confidence 1 2234599999999999999 99999999999999999998877777999999999988
Q ss_pred CCC--EEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecccc
Q 005646 406 DDN--YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (686)
Q Consensus 406 ~~~--~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 483 (686)
... .|+|||.|.+|+.||.+....+....+.+.+.++..-. .+++++..++.|.+|+++++..++.... .
T Consensus 124 ~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~vynL~n~~te~k~~~------S 195 (347)
T KOG0647|consen 124 GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIAVYNLENPPTEFKRIE------S 195 (347)
T ss_pred CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEEEEEcCCCcchhhhhc------C
Confidence 555 89999999999999999999999999999988876543 4888999999999999987654332211 1
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC--------------------------cceeEcCCCCEEEEEeCCCc
Q 005646 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGP--------------------------NVIGKYKDGKHIVSAGEDSN 537 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~--------------------------~~~~~~~dg~~l~sgs~Dg~ 537 (686)
...-.+.+++..+ +....+.|+-+|++.|..+. +.++|+|.-..|+|+|.||+
T Consensus 196 pLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt 274 (347)
T KOG0647|consen 196 PLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT 274 (347)
T ss_pred cccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce
Confidence 1123478888888 66666999999998887532 34789999999999999999
Q ss_pred EEEEeCCCCC
Q 005646 538 VYMWNCIGHE 547 (686)
Q Consensus 538 V~iWd~~~~~ 547 (686)
+.+||-+...
T Consensus 275 f~FWDkdar~ 284 (347)
T KOG0647|consen 275 FSFWDKDART 284 (347)
T ss_pred EEEecchhhh
Confidence 9999977654
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-23 Score=224.84 Aligned_cols=263 Identities=17% Similarity=0.314 Sum_probs=212.3
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
|...|.+..|. +.++++++.|++|++|+..++..
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~-------------------------------------------- 240 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL-------------------------------------------- 240 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE--------------------------------------------
Confidence 56788899888 55899999999999999988762
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecC
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVD 406 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~ 406 (686)
....+.||.+.|.++++...+ +|++|+.|+++++||+.+++|...+. |.+.|.++...
T Consensus 241 -----------------i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--- 300 (537)
T KOG0274|consen 241 -----------------ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--- 300 (537)
T ss_pred -----------------EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc---
Confidence 223378999999999997644 99999999999999999999999999 99999999984
Q ss_pred CCEEEEEEcCCcEEEEecCCCcEEEEec-cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCC
Q 005646 407 DNYFISGSIDGKVRIWAVLSCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (686)
Q Consensus 407 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 485 (686)
+.++++|+.|.+|++|++.++.++.+.. |..+|.++.++ +.++++|+.||+|++||+.++++.. ...+|
T Consensus 301 ~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~--------sl~gH 370 (537)
T KOG0274|consen 301 PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLK--------SLSGH 370 (537)
T ss_pred CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeee--------eecCC
Confidence 4788999999999999999999998777 99999999997 7799999999999999999777543 24558
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-eeE-------------cCCCCEEEEEeCCCcEEEEeCCCCCCCCc
Q 005646 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-IGK-------------YKDGKHIVSAGEDSNVYMWNCIGHEEPAH 551 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~-~~~-------------~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~ 551 (686)
..+|+++.+.+ . ..+++|+.|+.|++||..+. .+. ...+++|++++.|++|++||..+++....
T Consensus 371 ~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~ 448 (537)
T KOG0274|consen 371 TGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRT 448 (537)
T ss_pred cceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeee
Confidence 89999998876 3 89999999999999998876 221 12789999999999999999999874433
Q ss_pred cccc---cccccccccCCcEEEecCCCC-cCCCCCCCCccccc
Q 005646 552 DQAK---TIRSLERFTTNASIAIPWCGL-KCGNAEKEPQLHVS 590 (686)
Q Consensus 552 ~~~~---~~~~~~~~~~~~~v~~s~~g~-~~~~~~~g~~l~~~ 590 (686)
.... .+..+ .+.....++-.-+|. ..|++.++.....+
T Consensus 449 ~~~~~~~~v~~l-~~~~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 449 LEGRHVGGVSAL-ALGKEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eccCCcccEEEe-ecCcceEEEEecCCeeEEEecccCchhhhh
Confidence 3332 11111 111112223333343 78999998888766
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=220.39 Aligned_cols=169 Identities=17% Similarity=0.274 Sum_probs=131.5
Q ss_pred CeEEeccCCCCeeEEEeeCC-C-EEEEEECCCcEEEEECCCCe--------eeeEee-CCCCeEEEEEeecCCC-EEEEE
Q 005646 346 PLHEFHGHSGEILDLSWSKN-N-YLLSASIDKTVRLWRVGNDH--------CLRVFP-HSNYVTCVHFNPVDDN-YFISG 413 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~~--------~~~~~~-h~~~V~~v~fsp~~~~-~l~sg 413 (686)
++..+.+|.+.|.+++|+|+ + +|++|+.|++|+|||+.++. ++..+. |...|++++|+| ++. +|+++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P-~g~~iLaSg 144 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP-MNYYIMCSS 144 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC-CCCeEEEEE
Confidence 45677899999999999997 4 99999999999999997642 233444 999999999999 555 56799
Q ss_pred EcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 414 SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 414 s~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
+.|++|+|||+++++.+....+...|.+++|+|+|++|++++.|+.|+|||++++..... ...|.+.+....
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t--------l~gH~g~~~s~~ 216 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS--------FHIHDGGKNTKN 216 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE--------EecccCCceeEE
Confidence 999999999999998776566778899999999999999999999999999998765431 122333333222
Q ss_pred EeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCC----cEEEEeCCCC
Q 005646 494 FLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDS----NVYMWNCIGH 546 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg----~V~iWd~~~~ 546 (686)
+.. ..+++++++|+|++.|+ +|+|||+.+.
T Consensus 217 v~~-----------------------~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 217 IWI-----------------------DGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred EEe-----------------------eeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 211 01223788888888764 7999999863
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-23 Score=223.00 Aligned_cols=226 Identities=17% Similarity=0.258 Sum_probs=173.1
Q ss_pred cccCcceeee--c-CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCC-CEEEEEeCCCcEEE
Q 005646 201 DKQGEGERVR--L-NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG-QYLASAGDDGVVRL 276 (686)
Q Consensus 201 ~~~~~~~~~s--~-~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~v 276 (686)
.|.+.+.++. + +++.+++|+.|++|+||++...............+.+|...|.+++|+|++ ++|++|+.|++|+|
T Consensus 73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI 152 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV 152 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence 4666665554 4 556899999999999999865422111112235688999999999999975 69999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.+++ .+..+.+|...
T Consensus 153 WDl~tg~--------------------------------------------------------------~~~~l~~h~~~ 170 (493)
T PTZ00421 153 WDVERGK--------------------------------------------------------------AVEVIKCHSDQ 170 (493)
T ss_pred EECCCCe--------------------------------------------------------------EEEEEcCCCCc
Confidence 9998765 23455679999
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCC-eEEEEEeecCCCEEEEEE----cCCcEEEEecCCCc-
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNY-VTCVHFNPVDDNYFISGS----IDGKVRIWAVLSCH- 428 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~-V~~v~fsp~~~~~l~sgs----~Dg~V~iwd~~~~~- 428 (686)
|.+++|+|++ +|++++.|++|+|||+++++.+..+. |.+. +..+.|.| +++.+++++ .|+.|++||+++..
T Consensus 171 V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 171 ITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred eEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999999999 99999999999999999999888776 7654 45778888 667777654 47999999998754
Q ss_pred EEEEe--ccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 429 VVDWV--DIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 429 ~~~~~--~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
.+... .....+....|++++++|++++ .||.|++||+.++++.... ...+..++.+++|.|
T Consensus 250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~-------~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS-------SYSSVEPHKGLCMMP 313 (493)
T ss_pred ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe-------eccCCCCCcceEecc
Confidence 33322 2334566678999999999887 4999999999987654321 122345678888888
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=203.38 Aligned_cols=371 Identities=15% Similarity=0.186 Sum_probs=257.3
Q ss_pred EEeccccchhHHHHHhhccchhhHHHHHHhHHhhcccceeeecccCc-------cee----eecCCCccceeec---cce
Q 005646 159 ENTSELLPLMDEIVEKESSAAGKAERVKKRWFSRLRSLACVVDKQGE-------GER----VRLNEEDAMFCSK---VQR 224 (686)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-------~~~----~s~~~~~l~~g~~---d~~ 224 (686)
....+...+++.+.+-...+.++..|++..+.+..+.++|+.....+ ..+ +....+++.+-+. .++
T Consensus 118 ~~~nr~rk~r~~e~e~~~~~~~Y~~RLr~~F~k~~~~PkWA~~~~~~~~~DDe~e~s~d~lL~tt~~yi~s~s~~Lp~~t 197 (514)
T KOG2055|consen 118 KMTNRLRKLRTTENEGLLSGKEYKGRLREQFQKRYPVPKWAKKASGKDSEDDEEEGSLDDLLKTTVGYIDSRSKLLPPGT 197 (514)
T ss_pred hhhhhhhhccccccccccchHHHHHHHHHHHHHhcCCCcccccccccccccccccccHHHHHHhhhcccccccccCCCce
Confidence 33445566666655556677789999999999999988887654331 111 1112222221110 122
Q ss_pred EEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecC
Q 005646 225 VKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNH 304 (686)
Q Consensus 225 v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (686)
+.+-.++. .+.-..-.+.|++|.|+|...+|++||.|++++||.+.....
T Consensus 198 l~~krlkD----------aNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-------------------- 247 (514)
T KOG2055|consen 198 LNIKRLKD----------ANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-------------------- 247 (514)
T ss_pred eeeEeecc----------cccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccC--------------------
Confidence 22222111 111122357899999999999999999999999999865331
Q ss_pred CCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEEC
Q 005646 305 LSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRV 382 (686)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~ 382 (686)
..++.+.--..+|.+..|.|+| .+++++..+.++.||+
T Consensus 248 ----------------------------------------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 248 ----------------------------------------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred ----------------------------------------hhheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence 1234444456789999999999 7999999999999999
Q ss_pred CCCeeeeEee----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCC
Q 005646 383 GNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG 458 (686)
Q Consensus 383 ~~~~~~~~~~----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg 458 (686)
.+.+..+.-. ....+.....+| ++++|+..+..|.|.|....+++.+..+...+.|..++|+.||+.|++.+.+|
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~G 366 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTG 366 (514)
T ss_pred cccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCc
Confidence 9887655433 335677888899 99999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCeeeeeeeEEeeccccCCCCCe--EEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCC
Q 005646 459 DCRFYNVSDNHLELDAEICVHSKKKAPCKRI--TGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDS 536 (686)
Q Consensus 459 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I--~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg 536 (686)
.|++||++.+.++....- .+.| +.++.++ +|.|||+||.-|
T Consensus 367 eV~v~nl~~~~~~~rf~D---------~G~v~gts~~~S~----------------------------ng~ylA~GS~~G 409 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVD---------DGSVHGTSLCISL----------------------------NGSYLATGSDSG 409 (514)
T ss_pred eEEEEecCCcceEEEEee---------cCccceeeeeecC----------------------------CCceEEeccCcc
Confidence 999999998865432211 1223 3334444 899999999999
Q ss_pred cEEEEeCCCCCCCCccccccccccccccC-CcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccC
Q 005646 537 NVYMWNCIGHEEPAHDQAKTIRSLERFTT-NASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFES 615 (686)
Q Consensus 537 ~V~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s 615 (686)
.|.|||.++.- ....++++.++..+.+ +..+.|+.++. .|+..... .++ +-.++--.
T Consensus 410 iVNIYd~~s~~--~s~~PkPik~~dNLtt~Itsl~Fn~d~q---------iLAiaS~~-------~kn----alrLVHvP 467 (514)
T KOG2055|consen 410 IVNIYDGNSCF--ASTNPKPIKTVDNLTTAITSLQFNHDAQ---------ILAIASRV-------KKN----ALRLVHVP 467 (514)
T ss_pred eEEEeccchhh--ccCCCCchhhhhhhheeeeeeeeCcchh---------hhhhhhhc-------ccc----ceEEEecc
Confidence 99999987743 4456788888888877 77888877743 22211111 111 11222223
Q ss_pred CCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 616 FPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 616 ~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
+......||....+. . ...|+ .+++.|..++.|-.+|++++|+-
T Consensus 468 S~TVFsNfP~~n~~v-g------------------~vtc~-aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 468 SCTVFSNFPTSNTKV-G------------------HVTCM-AFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ceeeeccCCCCCCcc-c------------------ceEEE-EecCCCceEEeecCCCceeeEee
Confidence 445567899665441 1 12233 24555889999999999999974
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=188.21 Aligned_cols=251 Identities=16% Similarity=0.197 Sum_probs=208.9
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
..+..+|..+++|+.|++++||++... ........++|.+.|-.++|+| ...+|++++.|.+|++||+..++++
T Consensus 26 v~wn~~g~~lasgs~dktv~v~n~e~~-----r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~ 100 (313)
T KOG1407|consen 26 VAWNCDGTKLASGSFDKTVSVWNLERD-----RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT 100 (313)
T ss_pred EEEcccCceeeecccCCceEEEEecch-----hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE
Confidence 345678899999999999999998765 2233456788999999999998 5679999999999999999998865
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
..+. ..+.-.-+.|+|+
T Consensus 101 ~~i~---------------------------------------------------------------~~~eni~i~wsp~ 117 (313)
T KOG1407|consen 101 ARIE---------------------------------------------------------------TKGENINITWSPD 117 (313)
T ss_pred EEee---------------------------------------------------------------ccCcceEEEEcCC
Confidence 5443 1223346789999
Q ss_pred C-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEE
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVC 443 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~ 443 (686)
| +++.++.|..|...|.++.+.+...+....++-+.|+- ++++|+.....|+|.|.....-+.+ ....|.....||.
T Consensus 118 g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~ 196 (313)
T KOG1407|consen 118 GEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIE 196 (313)
T ss_pred CCEEEEecCcccEEEEEecccceeehhcccceeeeeeecC-CCCEEEEecCCceEEEEeccccccccccccCCcceEEEE
Confidence 9 99999999999999999999999998888999999996 8888888888899999999887766 5667888899999
Q ss_pred EccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-----
Q 005646 444 YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN----- 518 (686)
Q Consensus 444 ~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~----- 518 (686)
|+|+|+++|+|+.|-.+.+||+..--+... ...+.-+|..+.|+. ++++|++++.|..|-|-+..+
T Consensus 197 f~p~GryfA~GsADAlvSLWD~~ELiC~R~--------isRldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~ 267 (313)
T KOG1407|consen 197 FDPDGRYFATGSADALVSLWDVDELICERC--------ISRLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVW 267 (313)
T ss_pred ECCCCceEeeccccceeeccChhHhhhhee--------eccccCceEEEEecc-CcceeeccCccceEEeEecccCCeEE
Confidence 999999999999999999999975433221 223456799999999 899999999999998876543
Q ss_pred ---------ceeEcCCCCEEEEEeCC
Q 005646 519 ---------VIGKYKDGKHIVSAGED 535 (686)
Q Consensus 519 ---------~~~~~~dg~~l~sgs~D 535 (686)
.++|+|...+||-+..|
T Consensus 268 eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 268 EIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred EeeccCCceeEEecCCCceeeEEecC
Confidence 38899999999988765
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-23 Score=193.14 Aligned_cols=240 Identities=19% Similarity=0.277 Sum_probs=187.7
Q ss_pred eecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee--CCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 209 VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 209 ~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
+.+.|..++|++.|++|||+....... .+...+|.||.++|+.++|.. -|.+||+++.||.|.||.-.+++-
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w-- 92 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW-- 92 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCC----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch--
Confidence 457789999999999999999876543 233468999999999999976 799999999999999999877641
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~ 366 (686)
...++...|...|++++|.|.+
T Consensus 93 ----------------------------------------------------------~k~~e~~~h~~SVNsV~waphe 114 (299)
T KOG1332|consen 93 ----------------------------------------------------------TKAYEHAAHSASVNSVAWAPHE 114 (299)
T ss_pred ----------------------------------------------------------hhhhhhhhhcccceeecccccc
Confidence 2345567899999999999986
Q ss_pred ---EEEEEECCCcEEEEECCCC-e-eeeE--eeCCCCeEEEEEeecC--C-----------CEEEEEEcCCcEEEEecCC
Q 005646 367 ---YLLSASIDKTVRLWRVGND-H-CLRV--FPHSNYVTCVHFNPVD--D-----------NYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 367 ---~L~s~s~Dg~V~iWd~~~~-~-~~~~--~~h~~~V~~v~fsp~~--~-----------~~l~sgs~Dg~V~iwd~~~ 426 (686)
.|++++.||.|.|.+.+.. . .... +.|.-.|+++.|.|.. + ..|++|+.|..|+||+..+
T Consensus 115 ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~ 194 (299)
T KOG1332|consen 115 YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS 194 (299)
T ss_pred cceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCC
Confidence 8999999999999998765 2 2222 2399999999999931 2 5699999999999999988
Q ss_pred CcEE---EEeccCCcEEEEEEccCC----CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 427 CHVV---DWVDIRQIVTAVCYRPDG----QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 427 ~~~~---~~~~~~~~V~~v~~spdg----~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
++-+ .+.+|..-|..++|.|.- .+||++++||+|.||-........... + ...-...+..+.|+.
T Consensus 195 ~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~t--l---l~~f~~~~w~vSWS~--- 266 (299)
T KOG1332|consen 195 DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKT--L---LEEFPDVVWRVSWSL--- 266 (299)
T ss_pred cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccc--c---cccCCcceEEEEEec---
Confidence 6432 467899999999999953 479999999999999887332222111 1 111335688899998
Q ss_pred CeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 500 SKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 500 ~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
.|+.|+.++.|+.|.+|.-+.
T Consensus 267 -------------------------sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 267 -------------------------SGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred -------------------------cccEEEEecCCcEEEEEEeCC
Confidence 677777777777777776544
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-23 Score=207.04 Aligned_cols=239 Identities=21% Similarity=0.345 Sum_probs=192.2
Q ss_pred ccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 248 AHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 248 ~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
-|.+.|+.+.+.|. ...+||.+..+.|.|||..+.........
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~------------------------------------ 165 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG------------------------------------ 165 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc------------------------------------
Confidence 39999999999995 56788889999999999876431111000
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCee-------eeEee-CCCC
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHC-------LRVFP-HSNY 396 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~-------~~~~~-h~~~ 396 (686)
...|-..+.||.+.-.+|+|++.. .|++++.|++|++||+..... ...+. |...
T Consensus 166 ----------------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~ 229 (422)
T KOG0264|consen 166 ----------------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDV 229 (422)
T ss_pred ----------------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcc
Confidence 013566788999988999999976 999999999999999975432 23344 9999
Q ss_pred eEEEEEeecCCCEEEEEEcCCcEEEEecCC--CcEE-EEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeee
Q 005646 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLS--CHVV-DWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 397 V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~--~~~~-~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~ 472 (686)
|..++|+|.+.++|++++.|+.+.|||+|+ .+.. ....|...|.+++|+| ++..||+|+.|++|.+||+++-+..+
T Consensus 230 VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~l 309 (422)
T KOG0264|consen 230 VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPL 309 (422)
T ss_pred eehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCc
Confidence 999999999999999999999999999995 3332 4557899999999999 66788999999999999998765421
Q ss_pred eeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-----------------------------eeEc
Q 005646 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-----------------------------IGKY 523 (686)
Q Consensus 473 ~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~-----------------------------~~~~ 523 (686)
+ ....|...|..+.|+|.....|++++.|+++.|||.... +.|.
T Consensus 310 ------h-~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWn 382 (422)
T KOG0264|consen 310 ------H-TFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWN 382 (422)
T ss_pred ------e-eccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCC
Confidence 2 256788999999999999999999999999999996532 3344
Q ss_pred CC-CCEEEEEeCCCcEEEEeCCC
Q 005646 524 KD-GKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 524 ~d-g~~l~sgs~Dg~V~iWd~~~ 545 (686)
|+ .-.|+|.++|+.+.||++..
T Consensus 383 p~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 383 PNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCCeEEEEecCCceEEEeeccc
Confidence 44 45678899999999999874
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=194.77 Aligned_cols=238 Identities=20% Similarity=0.286 Sum_probs=197.1
Q ss_pred cccCcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCC--EEEEEeCCCcEEEEE
Q 005646 201 DKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ--YLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~Lasgs~Dg~I~vWd 278 (686)
-|.+.+.++..++.++|+|+.|.+|+|||..++.. ...+-.|.+.|+++.|.++-. .|++|+.||.|.+|+
T Consensus 41 aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~q-------lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 41 AHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ-------LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccceeEEEecceeEeccCCCCcEEEEeccchhh-------hcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 35667889999999999999999999999876543 355677999999999998764 899999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.... .+..+++|.+.|+
T Consensus 114 ~~~W~--------------------------------------------------------------~~~slK~H~~~Vt 131 (362)
T KOG0294|consen 114 VGSWE--------------------------------------------------------------LLKSLKAHKGQVT 131 (362)
T ss_pred cCCeE--------------------------------------------------------------Eeeeecccccccc
Confidence 87654 4567788999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCC
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ 437 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~ 437 (686)
.++.+|.+ +-++.+.|+.+++||+-+|+.-..+.-...-+.|.|+| .+.+|+.++.+ .|-||.+.+..+........
T Consensus 132 ~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~-~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~ 209 (362)
T KOG0294|consen 132 DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP-QGDHFVVSGRN-KIDIYQLDNASVFREIENPK 209 (362)
T ss_pred eeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC-CCCEEEEEecc-EEEEEecccHhHhhhhhccc
Confidence 99999999 77799999999999999998877777555556699999 89988888866 68999999888776666666
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEe-CCCCCeEEEEeCCCcEEEEeC
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL-PQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fs-p~~~~~l~~~s~D~~I~iwd~ 516 (686)
.+.++.|. ++..+++|..|+.|.+||........ ...+|..+|.++.+- ..++.+|++++.||.|++||.
T Consensus 210 r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~--------~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 210 RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLT--------EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred cceeeeec-CCceEEEecCCceEEEeccCCCccce--------eeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 67677665 55689999999999999998744322 256788999999843 336679999999999999997
Q ss_pred Cc
Q 005646 517 PN 518 (686)
Q Consensus 517 ~~ 518 (686)
..
T Consensus 281 ~~ 282 (362)
T KOG0294|consen 281 DM 282 (362)
T ss_pred cc
Confidence 64
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-23 Score=213.77 Aligned_cols=262 Identities=18% Similarity=0.299 Sum_probs=207.1
Q ss_pred ecccCcceeeecC-CCccceeeccceEEEEEcCCccccccccccCceecccCCceEE-EEEee-CCCEEEEEeCCCcEEE
Q 005646 200 VDKQGEGERVRLN-EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILT-MKFSP-DGQYLASAGDDGVVRL 276 (686)
Q Consensus 200 ~~~~~~~~~~s~~-~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~-l~fsp-dg~~Lasgs~Dg~I~v 276 (686)
..|+.++..+... +..++.++.|++++||.-... .+.....+++|.+-|.+ +++-+ ++..|++|+.|.+|.+
T Consensus 11 ~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~-----~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGK-----QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred ccCccchheeEecCCeEEeecCCCCceeeeeccCc-----ccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 3466666555443 446889999999999974322 22233567789998888 88886 5557999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
|.+.+.. |+..|+||...
T Consensus 86 ~~~~~~~--------------------------------------------------------------P~~~LkgH~sn 103 (745)
T KOG0301|consen 86 FKLSQAE--------------------------------------------------------------PLYTLKGHKSN 103 (745)
T ss_pred EecCCCC--------------------------------------------------------------chhhhhccccc
Confidence 9987654 77888999999
Q ss_pred eeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE-EEEec
Q 005646 357 ILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-VDWVD 434 (686)
Q Consensus 357 V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~-~~~~~ 434 (686)
|.+++...++.|+|||.|.++++|.. +++...+. |+..|+++++-| .. .++||+.|.+|++|.- +++ ..+.+
T Consensus 104 VC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~g 177 (745)
T KOG0301|consen 104 VCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSG 177 (745)
T ss_pred eeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecC-CC-cEEeccCcceeeeccC--Cchhhhhcc
Confidence 99999888889999999999999975 44555566 999999999998 44 8999999999999976 443 36678
Q ss_pred cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iw 514 (686)
|...|..+++-|++ .+++++.||.|++|++....+. ...+|..-|+++...+ +...+++++.|+++|||
T Consensus 178 HtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~---------~~~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW 246 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLL---------EMHGHTNFVYSISMAL-SDGLIVSTGEDRTLRIW 246 (745)
T ss_pred chhheeeeEEecCC-CeEeecCCceEEEEeccCceee---------eeeccceEEEEEEecC-CCCeEEEecCCceEEEe
Confidence 99999999999886 5778899999999999554332 1456778899999666 67899999999999999
Q ss_pred eCCcceeE--cC----------CCCEEEEEeCCCcEEEEeCCC
Q 005646 515 QGPNVIGK--YK----------DGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 515 d~~~~~~~--~~----------dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+...+.+. .| ...-|++|+.||.||||....
T Consensus 247 ~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 247 KKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 97644321 11 345578899999999998873
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=190.21 Aligned_cols=288 Identities=19% Similarity=0.311 Sum_probs=194.6
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee----eeeeccCCCCCcceEEeecCCCCceeeeeccccc
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER----LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKI 318 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (686)
...|++|.+.|++|+|+.||++|||++.|++|+||++..-.. ....+.....+..+.|.++....+..+. ..+..
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~-~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK-RGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc-cCCEE
Confidence 457899999999999999999999999999999999876331 1122233345556666665544333332 22222
Q ss_pred eeEEEeeccC---CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-C
Q 005646 319 SILKSLRRTS---ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-H 393 (686)
Q Consensus 319 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h 393 (686)
..+....... ....+-++ .++--+.|.-.|..+-...++ +|++++.|.+|.||++. |+.+..+. .
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D---------~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn 227 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHID---------NLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN 227 (420)
T ss_pred EEEEeeecccCCCCccccccc---------ccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc
Confidence 2222211111 11111111 111123477777777776666 99999999999999998 88888877 5
Q ss_pred CCCeEEEEEeecCCCEEEEEEcCCcEEEEecC---CC------cEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEe
Q 005646 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL---SC------HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN 464 (686)
Q Consensus 394 ~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~---~~------~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd 464 (686)
...-+..+.+| +|+++++++.---|++|.+- .| ++..+.+|...|+.++|+|+.+.+++.+.||+++|||
T Consensus 228 q~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 228 QSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred cccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEee
Confidence 56667788999 99999999999999999873 22 2446778999999999999999999999999999999
Q ss_pred CCCCeee-eeeeEE--eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC----------------cceeEcCC
Q 005646 465 VSDNHLE-LDAEIC--VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP----------------NVIGKYKD 525 (686)
Q Consensus 465 ~~~~~~~-~~~~~~--~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~----------------~~~~~~~d 525 (686)
+.-.-.. +...+. ..............+.++| +++.|+ .+....++++... +++.+.++
T Consensus 307 tdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA-~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 307 TDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLA-VSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSD 384 (420)
T ss_pred ccceEecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEE-eecCCceEEEEcccCccchhHHHhhcCceeeEEecCC
Confidence 8632111 000000 0001112233445899999 555544 4455677777533 45889999
Q ss_pred CCEEEEEeCCCcEEEEeCCC
Q 005646 526 GKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 526 g~~l~sgs~Dg~V~iWd~~~ 545 (686)
|++++|++ |..+++..-..
T Consensus 385 g~~~atcG-dr~vrv~~ntp 403 (420)
T KOG2096|consen 385 GKYIATCG-DRYVRVIRNTP 403 (420)
T ss_pred CcEEeeec-ceeeeeecCCC
Confidence 99999987 66788876433
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=210.42 Aligned_cols=227 Identities=22% Similarity=0.342 Sum_probs=178.9
Q ss_pred CCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCC
Q 005646 213 EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE 292 (686)
Q Consensus 213 ~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~ 292 (686)
...++..+-...|.+|+..... +..+ ...+...|+++.|+++|.+||+|..+|.|.|||..+.+
T Consensus 187 s~n~laValg~~vylW~~~s~~--v~~l-----~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k--------- 250 (484)
T KOG0305|consen 187 SANVLAVALGQSVYLWSASSGS--VTEL-----CSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK--------- 250 (484)
T ss_pred cCCeEEEEecceEEEEecCCCc--eEEe-----EecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc---------
Confidence 3345555667789999865443 1111 22248899999999999999999999999999998765
Q ss_pred CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc-CCCCeeEEEeeCCCEEEEE
Q 005646 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG-HSGEILDLSWSKNNYLLSA 371 (686)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~s~~~~L~s~ 371 (686)
.+..+.+ |...|.+++|. ...+.+|
T Consensus 251 -----------------------------------------------------~~~~~~~~h~~rvg~laW~-~~~lssG 276 (484)
T KOG0305|consen 251 -----------------------------------------------------KTRTLRGSHASRVGSLAWN-SSVLSSG 276 (484)
T ss_pred -----------------------------------------------------ccccccCCcCceeEEEecc-CceEEEe
Confidence 2344455 99999999998 4489999
Q ss_pred ECCCcEEEEECCCCeeeeE-ee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc-EEEEeccCCcEEEEEEcc-C
Q 005646 372 SIDKTVRLWRVGNDHCLRV-FP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VVDWVDIRQIVTAVCYRP-D 447 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~-~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~~~~~V~~v~~sp-d 447 (686)
+.|+.|..+|++..+.... +. |...|..+.|++ ++++|++|+.|+.+.|||..... .+.+..|...|.+++|+| .
T Consensus 277 sr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q 355 (484)
T KOG0305|consen 277 SRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ 355 (484)
T ss_pred cCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc
Confidence 9999999999998876554 55 999999999999 99999999999999999996554 457889999999999999 5
Q ss_pred CCEEEEE--ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCC
Q 005646 448 GQGGIVG--SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKD 525 (686)
Q Consensus 448 g~~l~~g--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~d 525 (686)
...||+| +.|+.|++||+.++..... ......|..|.|++ .
T Consensus 356 ~~lLAsGGGs~D~~i~fwn~~~g~~i~~---------vdtgsQVcsL~Wsk----------------------------~ 398 (484)
T KOG0305|consen 356 SGLLATGGGSADRCIKFWNTNTGARIDS---------VDTGSQVCSLIWSK----------------------------K 398 (484)
T ss_pred cCceEEcCCCcccEEEEEEcCCCcEecc---------cccCCceeeEEEcC----------------------------C
Confidence 5677775 5599999999998876542 22336699999999 3
Q ss_pred CCEEEE--EeCCCcEEEEeCCCCC
Q 005646 526 GKHIVS--AGEDSNVYMWNCIGHE 547 (686)
Q Consensus 526 g~~l~s--gs~Dg~V~iWd~~~~~ 547 (686)
.+-|++ |-.++.|.||++.+.+
T Consensus 399 ~kEi~sthG~s~n~i~lw~~ps~~ 422 (484)
T KOG0305|consen 399 YKELLSTHGYSENQITLWKYPSMK 422 (484)
T ss_pred CCEEEEecCCCCCcEEEEeccccc
Confidence 333333 3456789999998743
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=193.59 Aligned_cols=232 Identities=18% Similarity=0.302 Sum_probs=195.6
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
++|.||+..|+.++.......+.|++.|.+.+||.++++.
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~---------------------------------------- 181 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA---------------------------------------- 181 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeecccc----------------------------------------
Confidence 5678899999999998877799999999999999999886
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEEC------CC------------
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRV------GN------------ 384 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~------~~------------ 384 (686)
++..+.||.+.|++++|++.+ ++++++.|++..||.. ..
T Consensus 182 ----------------------CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE 239 (481)
T KOG0300|consen 182 ----------------------CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE 239 (481)
T ss_pred ----------------------ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence 456677999999999999999 9999999999999973 10
Q ss_pred ------------------C----eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEE
Q 005646 385 ------------------D----HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVT 440 (686)
Q Consensus 385 ------------------~----~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~ 440 (686)
+ .++..+. |...|.+..|.. .++.+++++.|.+..+||++++.++ .+.+|....+
T Consensus 240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt 318 (481)
T KOG0300|consen 240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT 318 (481)
T ss_pred hhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhcc
Confidence 0 1223333 889999999998 8999999999999999999999988 5668999999
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV- 519 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~- 519 (686)
.++-+|..+++++++.|-+.++||++..- .......+|...|++..|.. ...+++++.|.+|+|||+.+.
T Consensus 319 HcstHptQrLVvTsSrDtTFRLWDFReaI-------~sV~VFQGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 319 HCSTHPTQRLVVTSSRDTTFRLWDFREAI-------QSVAVFQGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred ccccCCcceEEEEeccCceeEeccchhhc-------ceeeeecccccceeEEEEec--CCceeecCCCceEEEeeecccc
Confidence 99999999999999999999999997321 12223567889999999997 368999999999999997643
Q ss_pred --------------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 520 --------------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 520 --------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++.+..++.|+.--++..|++||++...
T Consensus 390 splATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 390 SPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred CcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 5566677788888888899999998765
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-23 Score=205.94 Aligned_cols=258 Identities=18% Similarity=0.276 Sum_probs=208.9
Q ss_pred ecCCCccceeeccceEEEEEcCCcccc--ccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeee
Q 005646 210 RLNEEDAMFCSKVQRVKVYHCKKRSKE--LSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTE 287 (686)
Q Consensus 210 s~~~~~l~~g~~d~~v~vw~~~~~~~~--~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~ 287 (686)
+....++.||+ .|.|+|||+...... ...+ ....-..-|+++.+.|||+.|++||+-.++.|||+......-
T Consensus 428 S~~trhVyTgG-kgcVKVWdis~pg~k~PvsqL----dcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpri- 501 (705)
T KOG0639|consen 428 SNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQL----DCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRI- 501 (705)
T ss_pred cCCcceeEecC-CCeEEEeeccCCCCCCccccc----cccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcch-
Confidence 34445666665 577999998654221 1111 112345679999999999999999999999999997654211
Q ss_pred eccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-
Q 005646 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN- 366 (686)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~- 366 (686)
..++....-....|+.+||.
T Consensus 502 -----------------------------------------------------------kaeltssapaCyALa~spDak 522 (705)
T KOG0639|consen 502 -----------------------------------------------------------KAELTSSAPACYALAISPDAK 522 (705)
T ss_pred -----------------------------------------------------------hhhcCCcchhhhhhhcCCccc
Confidence 11222233467788999998
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEc
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYR 445 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~s 445 (686)
..+++..||.|.|||+.+...++.|. |.+.+.||..++ ++..|-||+.|.+||-||+++++.+...+....|.++.++
T Consensus 523 vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~c 601 (705)
T KOG0639|consen 523 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYC 601 (705)
T ss_pred eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccC
Confidence 88899999999999999999999998 999999999999 9999999999999999999999988888889999999999
Q ss_pred cCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc------
Q 005646 446 PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------ 519 (686)
Q Consensus 446 pdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~------ 519 (686)
|++.++++|..++.+.|-........+ ...|...|.++.|.+ -++++++++.|+-+..|...-.
T Consensus 602 P~~dWlavGMens~vevlh~skp~kyq---------lhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyGasiFqs 671 (705)
T KOG0639|consen 602 PTGDWLAVGMENSNVEVLHTSKPEKYQ---------LHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS 671 (705)
T ss_pred CCccceeeecccCcEEEEecCCcccee---------ecccccEEEEEEecc-cCceeeecCchhhhhhccCccccceeec
Confidence 999999999999999998876543211 233567899999999 8899999999999999986532
Q ss_pred --------eeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 520 --------IGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 520 --------~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
..++.|.+||+||+.|....||.+
T Consensus 672 kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 672 KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 345569999999999998888875
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-22 Score=188.33 Aligned_cols=225 Identities=16% Similarity=0.225 Sum_probs=184.6
Q ss_pred eEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceE
Q 005646 253 ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332 (686)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (686)
-.|+.|++.|.+||+|..||.|.|||+.+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~------------------------------------------------- 56 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR------------------------------------------------- 56 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-------------------------------------------------
Confidence 7899999999999999999999999998753
Q ss_pred EEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEE
Q 005646 333 VVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI 411 (686)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~ 411 (686)
+-..+.+|..+|.+++||++| .|+|+|.|..|.+||+..+.+++.+....+|+.++|+|.+.+.++
T Consensus 57 -------------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~v 123 (405)
T KOG1273|consen 57 -------------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCV 123 (405)
T ss_pred -------------hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEE
Confidence 234567899999999999999 999999999999999999999999999999999999998778777
Q ss_pred EEEcCCcEEEEecCCCcEEEEe-----ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCC
Q 005646 412 SGSIDGKVRIWAVLSCHVVDWV-----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC 486 (686)
Q Consensus 412 sgs~Dg~V~iwd~~~~~~~~~~-----~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 486 (686)
+.-.+..-.+-++..+....+. +......+..|.+.|+++++|+..|.+.+||..+.++.....+.. .
T Consensus 124 a~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-------~ 196 (405)
T KOG1273|consen 124 ATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-------V 196 (405)
T ss_pred EEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech-------h
Confidence 7776666666666553322111 112223345699999999999999999999999887766544432 2
Q ss_pred CCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC--------------------------cceeEcCCCCEEEEEeC-CCcEE
Q 005646 487 KRITGFQFLPQDSSKVMVSCADSQVRILQGP--------------------------NVIGKYKDGKHIVSAGE-DSNVY 539 (686)
Q Consensus 487 ~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~--------------------------~~~~~~~dg~~l~sgs~-Dg~V~ 539 (686)
..|..+.|+. .+..+++.+.|..||.|+.. +.++|+.+|.|++.|+. ...+|
T Consensus 197 ~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLY 275 (405)
T KOG1273|consen 197 QAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALY 275 (405)
T ss_pred eeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEE
Confidence 4588889988 88999999999999999854 23678889999998874 46799
Q ss_pred EEeCCCCC
Q 005646 540 MWNCIGHE 547 (686)
Q Consensus 540 iWd~~~~~ 547 (686)
||.-..|.
T Consensus 276 IWE~~~Gs 283 (405)
T KOG1273|consen 276 IWEKSIGS 283 (405)
T ss_pred EEecCCcc
Confidence 99998876
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=203.36 Aligned_cols=270 Identities=17% Similarity=0.288 Sum_probs=208.9
Q ss_pred eEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 347 LHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 347 ~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
+..+.||.+.|.+|+=+|.. .+++|+.||.|+|||+.+..|+..|. |.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeee
Confidence 56779999999999999988 89999999999999999999999999 999999999964 7789999999999999
Q ss_pred cCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 424 VLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 424 ~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
+... .+..+.....+..+.-+..+..+++++. .|.|||.....+.....+ ....|.++.|+|.....|+
T Consensus 136 ~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smsw--------G~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 136 IDGP-PLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSW--------GADSISSVKFNPVETSILA 204 (433)
T ss_pred ccCC-cceeeeccccccccccccccccccccCc--eeeecccccCCccceeec--------CCCceeEEecCCCcchhee
Confidence 8764 5566666777888888777788888764 599999976665543332 2255999999998888889
Q ss_pred EEeCCCcEEEEeCC--------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEE
Q 005646 504 VSCADSQVRILQGP--------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASI 569 (686)
Q Consensus 504 ~~s~D~~I~iwd~~--------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v 569 (686)
++..|+.|.+||.. +.++|.|.+-.+++|++|.++|.+|+..-. .++..+..|.+
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-------~p~~v~~dhvs---- 273 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-------RPLNVHKDHVS---- 273 (433)
T ss_pred eeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhc-------ccchhhcccce----
Confidence 99999999999964 458999999999999999999999998754 22222222211
Q ss_pred EecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhh
Q 005646 570 AIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLK 649 (686)
Q Consensus 570 ~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (686)
....+.|||- |++|++++-|+++++.+...... ..+-+...|.
T Consensus 274 ------------------------AV~dVdfspt----G~EfvsgsyDksIRIf~~~~~~S-RdiYhtkRMq-------- 316 (433)
T KOG0268|consen 274 ------------------------AVMDVDFSPT----GQEFVSGSYDKSIRIFPVNHGHS-RDIYHTKRMQ-------- 316 (433)
T ss_pred ------------------------eEEEeccCCC----cchhccccccceEEEeecCCCcc-hhhhhHhhhh--------
Confidence 1122356776 88999999999999999665542 1111111111
Q ss_pred cccccCccCCCCceEEEEecCCCeEeEEeec
Q 005646 650 SSCLCTTSSHAWGLVIVTAGWDGRIRSFLNY 680 (686)
Q Consensus 650 ~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~~ 680 (686)
...++..+ .+.+.|++|++||.||+|+-+
T Consensus 317 -~V~~Vk~S-~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 317 -HVFCVKYS-MDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred -eeeEEEEe-ccccEEEecCCCcceeeeecc
Confidence 12333333 458999999999999999875
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-22 Score=210.10 Aligned_cols=379 Identities=15% Similarity=0.183 Sum_probs=278.1
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
+.++.|+..|.+++|++++... ..+++++...|+++.=+|-=..+|.|..+|+|.|+++..++.+..+
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~-------v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF----- 240 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKV-------VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF----- 240 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcE-------EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE-----
Confidence 4678899999999999876544 4678899999999999998789999999999999999988754433
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSA 371 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~ 371 (686)
+...+.|+.++|.-|| .|++|
T Consensus 241 ---------------------------------------------------------k~d~g~VtslSFrtDG~p~las~ 263 (910)
T KOG1539|consen 241 ---------------------------------------------------------KQDWGRVTSLSFRTDGNPLLASG 263 (910)
T ss_pred ---------------------------------------------------------EccccceeEEEeccCCCeeEEec
Confidence 3234899999999999 88999
Q ss_pred ECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC--C--cEE-EEeccCCcEEEEEE
Q 005646 372 SIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS--C--HVV-DWVDIRQIVTAVCY 444 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~--~--~~~-~~~~~~~~V~~v~~ 444 (686)
+..|.+-+||++..+.+.... |.+.|+.+.|.| ....+++.+.|..+++|=..+ + +.+ ...+|..+..++.|
T Consensus 264 ~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irf 342 (910)
T KOG1539|consen 264 RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRF 342 (910)
T ss_pred cCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheee
Confidence 999999999999998887776 999999999999 899999999999998884443 3 223 44578888888888
Q ss_pred c-cCCCEEEEEecCCcEEEEeCCCCee--------------------------eee------------------------
Q 005646 445 R-PDGQGGIVGSMMGDCRFYNVSDNHL--------------------------ELD------------------------ 473 (686)
Q Consensus 445 s-pdg~~l~~gs~dg~i~iwd~~~~~~--------------------------~~~------------------------ 473 (686)
. .+|..+.+++.|++.+.|++..... ...
T Consensus 343 y~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~ 422 (910)
T KOG1539|consen 343 YGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKR 422 (910)
T ss_pred eccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcc
Confidence 7 6888888888888888777631100 000
Q ss_pred --eeEEeecc-----------ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCccee------------------E
Q 005646 474 --AEICVHSK-----------KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG------------------K 522 (686)
Q Consensus 474 --~~~~~~~~-----------~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~------------------~ 522 (686)
..+..... .+.....+++++.++ -++..+.|...|.|-+|++.+.+. .
T Consensus 423 ~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~ 501 (910)
T KOG1539|consen 423 SAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAV 501 (910)
T ss_pred eEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEe
Confidence 00000000 011225678888888 789999999999999999876543 2
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCCCCcccccc-ccccccccCCcEEEecCC--CCcCCCCCCCCcccccCCCCCc--c
Q 005646 523 YKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKT-IRSLERFTTNASIAIPWC--GLKCGNAEKEPQLHVSDDDSPE--N 597 (686)
Q Consensus 523 ~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~s~~--g~~~~~~~~g~~l~~~~~~~~~--~ 597 (686)
..-++.+++++.||.+++||+............. +...-.+.....+++..+ .....|..|....+.|.+|... .
T Consensus 502 D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd 581 (910)
T KOG1539|consen 502 DGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD 581 (910)
T ss_pred cCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence 2256789999999999999998866222222111 111111111222333333 4466777788888888888754 5
Q ss_pred cccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccCccCCCCceEEEEecCC-CeEeE
Q 005646 598 LAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWD-GRIRS 676 (686)
Q Consensus 598 ~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~D-G~Ir~ 676 (686)
+.|||| +.|+++++.|.++++|+..+...+-.+ .+.+.|..+ .+++.|.+|||+-.| .-|-+
T Consensus 582 ~~FS~D----grWlisasmD~tIr~wDlpt~~lID~~------------~vd~~~~sl-s~SPngD~LAT~Hvd~~gIyl 644 (910)
T KOG1539|consen 582 MTFSPD----GRWLISASMDSTIRTWDLPTGTLIDGL------------LVDSPCTSL-SFSPNGDFLATVHVDQNGIYL 644 (910)
T ss_pred eEeCCC----CcEEEEeecCCcEEEEeccCcceeeeE------------ecCCcceee-EECCCCCEEEEEEecCceEEE
Confidence 688999 788899999999999996655432222 112346665 455669999999999 78999
Q ss_pred Eeec
Q 005646 677 FLNY 680 (686)
Q Consensus 677 w~~~ 680 (686)
|-|.
T Consensus 645 WsNk 648 (910)
T KOG1539|consen 645 WSNK 648 (910)
T ss_pred EEch
Confidence 9984
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-20 Score=195.93 Aligned_cols=260 Identities=14% Similarity=0.167 Sum_probs=188.6
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEE-EEEeCCCcEEEEEeecCeeeeeeccCC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDIPE 292 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~vWd~~~~~~~~~~~~~~ 292 (686)
+.+++++.++.+++|+...... .+.+..|. .+.+++|+|+|++| ++++.++.|++||+.+++....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~-------~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~----- 68 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEV-------TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT----- 68 (300)
T ss_pred cEEEEecCCCEEEEEECCCCce-------EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe-----
Confidence 4567888999999999765321 23344444 46789999999976 5677889999999987653221
Q ss_pred CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE-E
Q 005646 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-S 370 (686)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~-s 370 (686)
+..+. .+..++|+|++ .|+ +
T Consensus 69 ---------------------------------------------------------~~~~~-~~~~~~~~~~g~~l~~~ 90 (300)
T TIGR03866 69 ---------------------------------------------------------LPSGP-DPELFALHPNGKILYIA 90 (300)
T ss_pred ---------------------------------------------------------ccCCC-CccEEEECCCCCEEEEE
Confidence 11122 24568899998 554 4
Q ss_pred EECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCC-cEEEEecCCCcEEEEeccCCcEEEEEEccCCC
Q 005646 371 ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG-KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ 449 (686)
Q Consensus 371 ~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg-~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~ 449 (686)
++.|+.|++||+.+.+.+..+.+...+.+++|+| ++.++++++.++ .+.+||..+++..........+..++|+|+|+
T Consensus 91 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 169 (300)
T TIGR03866 91 NEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGK 169 (300)
T ss_pred cCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCC
Confidence 5668999999999998888887666688999999 999999988775 46778999887765544555678899999999
Q ss_pred EEEEEe-cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE-EeCCCcEEEEeCCc---------
Q 005646 450 GGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV-SCADSQVRILQGPN--------- 518 (686)
Q Consensus 450 ~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~-~s~D~~I~iwd~~~--------- 518 (686)
++++++ .++.|++||+.+++............. .......++.|+| +++.+++ ...++.|.+||..+
T Consensus 170 ~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 247 (300)
T TIGR03866 170 ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH-PEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVLDYLLV 247 (300)
T ss_pred EEEEEcCCCCEEEEEEcCcceeeeeeeecccccc-cccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEe
Confidence 886554 589999999998765432221111100 0112345788999 5665444 45677899998642
Q ss_pred -----ceeEcCCCCEEEEE-eCCCcEEEEeCCCCC
Q 005646 519 -----VIGKYKDGKHIVSA-GEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 -----~~~~~~dg~~l~sg-s~Dg~V~iWd~~~~~ 547 (686)
.+.++|+|++|+++ +.+|.|+|||+.+++
T Consensus 248 ~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 248 GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 36688999999986 468999999999876
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=186.23 Aligned_cols=252 Identities=19% Similarity=0.277 Sum_probs=199.6
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
.+|++..+.|+.++-||.+++|+...... . + .-.|..++++++|.++ ..+++|+.||.|+.+|+.++.
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~~~l--~-----~-~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~--- 86 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPANSL--K-----L-KFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN--- 86 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccchhh--h-----h-heecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc---
Confidence 45666678999999999999999876632 1 1 2238999999999974 479999999999999998875
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~ 366 (686)
...+..|...|.++.+++-.
T Consensus 87 ------------------------------------------------------------~~~igth~~~i~ci~~~~~~ 106 (323)
T KOG1036|consen 87 ------------------------------------------------------------EDQIGTHDEGIRCIEYSYEV 106 (323)
T ss_pred ------------------------------------------------------------ceeeccCCCceEEEEeeccC
Confidence 22344699999999999765
Q ss_pred -EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE---EeccCCcEEEE
Q 005646 367 -YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD---WVDIRQIVTAV 442 (686)
Q Consensus 367 -~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~---~~~~~~~V~~v 442 (686)
.+++||.|++|++||.+...+...+.....|.|+.. .++.|+.|+.|..|.+||+++..... ....+-.+.+|
T Consensus 107 ~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v 183 (323)
T KOG1036|consen 107 GCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCV 183 (323)
T ss_pred CeEEEcccCccEEEEeccccccccccccCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEE
Confidence 999999999999999999878888887889999987 67899999999999999999876543 34566789999
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE--eecccc---CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC--VHSKKK---APCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~--~~~~~~---~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
++-|++..+++++.||.|.+=.+......+..... .|.... ....+|++++|+| -...+++|+.||.|.+||+.
T Consensus 184 ~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 184 ALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred EEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEccCc
Confidence 99999999999999999888766654222222222 222111 1234799999999 57899999999999999975
Q ss_pred c---------------ceeEcCCCCEEEEEeC
Q 005646 518 N---------------VIGKYKDGKHIVSAGE 534 (686)
Q Consensus 518 ~---------------~~~~~~dg~~l~sgs~ 534 (686)
+ .++|+.||..||+|+.
T Consensus 263 ~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 263 NRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred chhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 3 2567778888888864
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=191.45 Aligned_cols=293 Identities=17% Similarity=0.277 Sum_probs=213.1
Q ss_pred ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCC
Q 005646 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~ 294 (686)
.+.+++.|.+.+||.+..... ..++.||.+.|++|+|++.+.+++|++.|++.+||...-.-.+..-..+...
T Consensus 162 i~gtASADhTA~iWs~Esg~C-------L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~h 234 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGAC-------LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDH 234 (481)
T ss_pred ceeecccccceeEEeeccccc-------eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCC
Confidence 567789999999997765432 4568899999999999999999999999999999984321111100000000
Q ss_pred CcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC
Q 005646 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI 373 (686)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~ 373 (686)
..- ... ... +............++..+ ..|+..|.+|.+.|.+..|...+ .+++++.
T Consensus 235 SsE--------eE~---e~s-De~~~d~d~~~~sD~~ti----------RvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSW 292 (481)
T KOG0300|consen 235 SSE--------EEE---EHS-DEHNRDTDSSEKSDGHTI----------RVPLMRLTGHRAVVSACDWLAGGQQMVTASW 292 (481)
T ss_pred Cch--------hhh---hcc-cccccccccccccCCcee----------eeeeeeeeccccceEehhhhcCcceeeeeec
Confidence 000 000 000 000000000000011011 14788999999999999999988 9999999
Q ss_pred CCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC--cEEEEeccCCcEEEEEEccCCCE
Q 005646 374 DKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC--HVVDWVDIRQIVTAVCYRPDGQG 450 (686)
Q Consensus 374 Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~--~~~~~~~~~~~V~~v~~spdg~~ 450 (686)
|.+..+||++++..+..+. |....+.++-+| +.+++++.+.|.+.|+||.+.. .+-.+.+|...|+++.|.-|. .
T Consensus 293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~ 370 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-R 370 (481)
T ss_pred cccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-c
Confidence 9999999999999999988 999999999999 9999999999999999999843 233677899999999999876 6
Q ss_pred EEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc------------
Q 005646 451 GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN------------ 518 (686)
Q Consensus 451 l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~------------ 518 (686)
+++|+.|.+|++||+++..-.+.. + ....+++.++.+. ....++.--.+.+||+||+..
T Consensus 371 vVSgSDDrTvKvWdLrNMRsplAT---I-----RtdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRq 441 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRSPLAT---I-----RTDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQ 441 (481)
T ss_pred eeecCCCceEEEeeeccccCccee---e-----ecCCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCccccc
Confidence 789999999999999876543211 1 1235688889988 667888888889999999642
Q ss_pred -------ceeEcCC--CCEEEEEeCCCcEEEEeCCCCC
Q 005646 519 -------VIGKYKD--GKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 -------~~~~~~d--g~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.+|..+ -.-|++++.|..+.-|+++.+.
T Consensus 442 gHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 442 GHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred ccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 2334332 2457788899999999988754
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-22 Score=216.83 Aligned_cols=246 Identities=20% Similarity=0.288 Sum_probs=200.7
Q ss_pred cccC--cceeeecCCCccceeeccceEEEEEcCC-----------ccccccccccCceecccCCceEEEEEeeCCCEEEE
Q 005646 201 DKQG--EGERVRLNEEDAMFCSKVQRVKVYHCKK-----------RSKELSALYKGQEIQAHDGSILTMKFSPDGQYLAS 267 (686)
Q Consensus 201 ~~~~--~~~~~s~~~~~l~~g~~d~~v~vw~~~~-----------~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las 267 (686)
+|.+ .+.+|++||.+||+|+.|+.|.||.... ..+....+.....|.+|.+.|..++|+|++.+|++
T Consensus 67 ~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS 146 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVS 146 (942)
T ss_pred cccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEE
Confidence 4444 4466789999999999999999999873 12233444455678999999999999999999999
Q ss_pred EeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCe
Q 005646 268 AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPL 347 (686)
Q Consensus 268 gs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (686)
+|.|++|.|||..+.+ .+
T Consensus 147 ~s~DnsViiwn~~tF~--------------------------------------------------------------~~ 164 (942)
T KOG0973|consen 147 VSLDNSVIIWNAKTFE--------------------------------------------------------------LL 164 (942)
T ss_pred ecccceEEEEccccce--------------------------------------------------------------ee
Confidence 9999999999987764 45
Q ss_pred EEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-------CCCCeEEEEEeecCCCEEEEEEc----
Q 005646 348 HEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-------HSNYVTCVHFNPVDDNYFISGSI---- 415 (686)
Q Consensus 348 ~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-------h~~~V~~v~fsp~~~~~l~sgs~---- 415 (686)
..+.+|.+.|..+.|.|-| +|++-+.|++|+||++..-.+.+.+. ....+..+.|+| ||.+|++...
T Consensus 165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~ 243 (942)
T KOG0973|consen 165 KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGG 243 (942)
T ss_pred eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-CcCeecchhhccCC
Confidence 6678999999999999999 99999999999999988766666654 346789999999 9999999753
Q ss_pred CCcEEEEecCCCc-EEEEeccCCcEEEEEEcc-----CCC------------EEEEEecCCcEEEEeCCCCeeeeeeeEE
Q 005646 416 DGKVRIWAVLSCH-VVDWVDIRQIVTAVCYRP-----DGQ------------GGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (686)
Q Consensus 416 Dg~V~iwd~~~~~-~~~~~~~~~~V~~v~~sp-----dg~------------~l~~gs~dg~i~iwd~~~~~~~~~~~~~ 477 (686)
-.++.|.+-.+-+ -..+.+|..+++++.|+| ..+ .+|+|+.|++|-||.....++.+..
T Consensus 244 ~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi--- 320 (942)
T KOG0973|consen 244 KSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI--- 320 (942)
T ss_pred cceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh---
Confidence 2468888876666 458899999999999998 111 6788999999999998766554321
Q ss_pred eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 478 ~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
+.-....|.+++|+| ++..|++++.||+|.++...
T Consensus 321 ----~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 321 ----HNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred ----hhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcc
Confidence 222346799999999 89999999999999999743
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=214.56 Aligned_cols=279 Identities=17% Similarity=0.245 Sum_probs=207.4
Q ss_pred Ccceeeec--CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEee
Q 005646 204 GEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVV 280 (686)
Q Consensus 204 ~~~~~~s~--~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~ 280 (686)
...++++. +-..++.++ ....+||.+........-......-+.-.-.+..++|.. +.++|||++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 33344443 334444444 445777776554332211111000011112456677865 57799999999999999996
Q ss_pred cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
.... .+.+..|..|...+.++
T Consensus 119 k~~r-----------------------------------------------------------nk~l~~f~EH~Rs~~~l 139 (839)
T KOG0269|consen 119 KSIR-----------------------------------------------------------NKLLTVFNEHERSANKL 139 (839)
T ss_pred cccc-----------------------------------------------------------chhhhHhhhhccceeee
Confidence 5210 13456677899999999
Q ss_pred EeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE--EEEecc
Q 005646 361 SWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--VDWVDI 435 (686)
Q Consensus 361 ~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~--~~~~~~ 435 (686)
.|++.. +|++||.||+|++||++..+...++. ....|..|+|+|..+++|+++...|.|++||++.... ..+..|
T Consensus 140 dfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH 219 (839)
T KOG0269|consen 140 DFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH 219 (839)
T ss_pred eeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcc
Confidence 999977 99999999999999999988887776 7789999999999999999999999999999997653 467789
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe--CCCcEEE
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC--ADSQVRI 513 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s--~D~~I~i 513 (686)
.++|.++.|+|++.+||+|+.|++|+|||+.+.+......+ + ...+|..+.|-|.....|++++ .|-.|+|
T Consensus 220 ~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI--n-----Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~V 292 (839)
T KOG0269|consen 220 NGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI--N-----TIAPVGRVKWRPARSYHLATCSMVVDTSVHV 292 (839)
T ss_pred cCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE--e-----ecceeeeeeeccCccchhhhhhccccceEEE
Confidence 99999999999999999999999999999987654433222 2 2267999999997777777766 5889999
Q ss_pred EeCC----------------cceeEcC-CCCEEEEEeCCCcEEEEeCCCCCCC
Q 005646 514 LQGP----------------NVIGKYK-DGKHIVSAGEDSNVYMWNCIGHEEP 549 (686)
Q Consensus 514 wd~~----------------~~~~~~~-dg~~l~sgs~Dg~V~iWd~~~~~~~ 549 (686)
||+. +.++|-. |...|.+++.||+|..-.+++...+
T Consensus 293 WDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~p 345 (839)
T KOG0269|consen 293 WDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTP 345 (839)
T ss_pred EeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccCh
Confidence 9965 2344433 6778899999999887777765533
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=194.18 Aligned_cols=223 Identities=19% Similarity=0.279 Sum_probs=193.3
Q ss_pred CceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCc
Q 005646 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (686)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (686)
..|+++...|....++|||.|..+.++|...++
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q----------------------------------------------- 252 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ----------------------------------------------- 252 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhh-----------------------------------------------
Confidence 468888888877799999999999999987664
Q ss_pred eEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCC
Q 005646 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDN 408 (686)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~ 408 (686)
.+..|.||...|+.+.++|+. .+++++.|..|+||......+..... |..+|+.+..+| ++.
T Consensus 253 ---------------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~-tge 316 (506)
T KOG0289|consen 253 ---------------ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP-TGE 316 (506)
T ss_pred ---------------hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc-CCc
Confidence 456778999999999999998 99999999999999998877766666 999999999999 999
Q ss_pred EEEEEEcCCcEEEEecCCCcEEEEeccC---CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCC
Q 005646 409 YFISGSIDGKVRIWAVLSCHVVDWVDIR---QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (686)
Q Consensus 409 ~l~sgs~Dg~V~iwd~~~~~~~~~~~~~---~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 485 (686)
||++++.||+..+.|++++..+....+. -.+++++|+|||..|.+|+.||.++|||+....... +..+|
T Consensus 317 YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a--------~Fpgh 388 (506)
T KOG0289|consen 317 YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA--------KFPGH 388 (506)
T ss_pred EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc--------cCCCC
Confidence 9999999999999999999988665553 358999999999999999999999999998765322 34568
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc----------------ceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPN----------------VIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~----------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
.++|..++|+. ++.+|++++.|+.|++||+.. .+.|.+.|++|+.++.|=+|++++-.+
T Consensus 389 t~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 389 TGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred CCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 89999999999 999999999999999999753 356777999999998887777666443
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-20 Score=179.35 Aligned_cols=264 Identities=17% Similarity=0.215 Sum_probs=202.5
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC--CCcEEEEEeecC
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD--DGVVRLWQVVED 282 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~--Dg~I~vWd~~~~ 282 (686)
....|+.+|+.+++++.|..++||+...... ..++..++-.|..++|......++.++. |.+||.-++.+.
T Consensus 18 ~sl~fs~~G~~litss~dDsl~LYd~~~g~~-------~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 18 NSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-------VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred eEEEecCCCCEEEEecCCCeEEEEEcCCCce-------eeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence 3456677888999999999999998765432 3445556778999999877666666665 889999998876
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
+ .++-|.||...|..|+.
T Consensus 91 k--------------------------------------------------------------ylRYF~GH~~~V~sL~~ 108 (311)
T KOG1446|consen 91 K--------------------------------------------------------------YLRYFPGHKKRVNSLSV 108 (311)
T ss_pred c--------------------------------------------------------------eEEEcCCCCceEEEEEe
Confidence 5 56778899999999999
Q ss_pred eCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--EEEEe----cc
Q 005646 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWV----DI 435 (686)
Q Consensus 363 s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~--~~~~~----~~ 435 (686)
+|-+ .+++++.|++|++||++..+|...+.-.. -..++|.| .|-+||++.....|+|||++.-. ....+ ..
T Consensus 109 sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~ 186 (311)
T KOG1446|consen 109 SPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDND 186 (311)
T ss_pred cCCCCeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCC
Confidence 9988 99999999999999999988887776333 24588999 99999999988899999998642 11111 33
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
....+.+.|+|||++++.++..+.+++.|.-++.++........ .... -....|.| +++.+++++.||+|.+|+
T Consensus 187 ~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~----~~~~-~~~a~ftP-ds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 187 EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN----AGNL-PLSATFTP-DSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC----CCCc-ceeEEECC-CCcEEEEecCCCcEEEEE
Confidence 56789999999999999999999999999998886554332211 1111 25678899 899999999999999999
Q ss_pred CCcc----------------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 516 GPNV----------------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 516 ~~~~----------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..+. +.|.| ++..-++.+..+-+|=....+
T Consensus 261 ~~tg~~v~~~~~~~~~~~~~~~fnP--~~~mf~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 261 LETGKKVAVLRGPNGGPVSCVRFNP--RYAMFVSASSNLVFWLPDEDA 306 (311)
T ss_pred cCCCcEeeEecCCCCCCccccccCC--ceeeeeecCceEEEEeccccc
Confidence 7643 22333 444444556678888766443
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=203.85 Aligned_cols=409 Identities=17% Similarity=0.232 Sum_probs=249.6
Q ss_pred ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCC---EEEEEeCCCcEEEEEeecCeeeeeeccC
Q 005646 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ---YLASAGDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~---~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
.++.|+.+..|.++.-... ......++.||...|.+|+|..-+. +|||+|+|.+||||.+.-+.......-.
T Consensus 161 lla~Ggs~~~v~~~s~~~d-----~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e 235 (764)
T KOG1063|consen 161 LLACGGSKFVVDLYSSSAD-----SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERE 235 (764)
T ss_pred EEEecCcceEEEEeccCCc-----ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccc
Confidence 4566778888888864421 2233467899999999999987543 8999999999999998755422211100
Q ss_pred CCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEE
Q 005646 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLS 370 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s 370 (686)
.. .....+ ......+. .-.+++ ..-..+.||.+.|.++.|+|.+ .|++
T Consensus 236 ~~----~t~~~~--------------~~~f~~l~-----------~i~~~i--s~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 236 DS----LTTLSN--------------LPVFMILE-----------EIQYRI--SFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred cc----cccccC--------------Cceeeeee-----------eEEEEE--ehhhhhcCcccceEEEEEccchhhhee
Confidence 00 000000 00000000 000000 0112345999999999999999 9999
Q ss_pred EECCCcEEEEECCCCeee--eE--ee----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc----EEEEeccCCc
Q 005646 371 ASIDKTVRLWRVGNDHCL--RV--FP----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH----VVDWVDIRQI 438 (686)
Q Consensus 371 ~s~Dg~V~iWd~~~~~~~--~~--~~----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~----~~~~~~~~~~ 438 (686)
+|+|+++.+|...+..-+ .. +. .........|+| +++.+++-+.-|-.++|...... .....+|...
T Consensus 285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~ 363 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG 363 (764)
T ss_pred cccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCccceeecccccccccc
Confidence 999999999988765322 22 22 245688999999 99999999999999999843321 2234578899
Q ss_pred EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 439 V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
|+.++|+|.|.++++.+.|-+-|+|---..+.. ..-..+.+-|...+++++|-+ ....+++|....-+|+++.+.
T Consensus 364 V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~----wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk 438 (764)
T KOG1063|consen 364 VKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE----WHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPK 438 (764)
T ss_pred ceeeeecCCCCEEEEeccccceeeecccccccc----eeeecccccccccceeeehcc-CCceeeecccceeeeeecCcH
Confidence 999999999999999999999999976532221 222334556788899999998 456777777788899998653
Q ss_pred ce----------e-----EcCCCC----------EEEE-EeCCCcE-EEEeCCCC---------CCCCc--cc-------
Q 005646 519 VI----------G-----KYKDGK----------HIVS-AGEDSNV-YMWNCIGH---------EEPAH--DQ------- 553 (686)
Q Consensus 519 ~~----------~-----~~~dg~----------~l~s-gs~Dg~V-~iWd~~~~---------~~~~~--~~------- 553 (686)
.+ + -.|+|- -+.- -.++|.. .+|- ++. +.|.. ++
T Consensus 439 ~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~-et~~~~~p~~L~ePP~EdqLq~~tLwPE 517 (764)
T KOG1063|consen 439 SFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCA-ETPLAAAPCELTEPPTEDQLQQNTLWPE 517 (764)
T ss_pred HHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceee-ecccccCchhccCCChHHHHHHhccchh
Confidence 21 0 011110 0000 0111111 0010 000 00000 00
Q ss_pred ccccc--ccccccCCcEEEecCCCC----------------cCCCCCCCCcccccCCCCC--cccccCCCccccCccccc
Q 005646 554 AKTIR--SLERFTTNASIAIPWCGL----------------KCGNAEKEPQLHVSDDDSP--ENLAFAPARFSLGQEYVF 613 (686)
Q Consensus 554 ~~~~~--~~~~~~~~~~v~~s~~g~----------------~~~~~~~g~~l~~~~~~~~--~~~~~spd~~~~~~~~~~ 613 (686)
.+.+. .+|-| .++++.+|. .+|+..+=.....+.+|+- ..+.|||| +..+++
T Consensus 518 v~KLYGHGyEv~----~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpd----g~~LLs 589 (764)
T KOG1063|consen 518 VHKLYGHGYEVY----ALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPD----GRYLLS 589 (764)
T ss_pred hHHhccCceeEE----EEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCC----CcEEEE
Confidence 01111 12222 222332222 3566555555566777764 46789999 677889
Q ss_pred cCCCCCCCCCCCCcCCC-ccccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEeecCCC
Q 005646 614 ESFPKGCATWPEEKLPA-LSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYGLP 683 (686)
Q Consensus 614 ~s~d~~~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~~g~p 683 (686)
.+.|++..+|...+... ..+. ...+.|.+++.+ |.. +++++.+|||++|-+|++|...-+|
T Consensus 590 vsRDRt~sl~~~~~~~~~e~~f----a~~k~HtRIIWd-csW----~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 590 VSRDRTVSLYEVQEDIKDEFRF----ACLKAHTRIIWD-CSW----SPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred eecCceEEeeeeecccchhhhh----ccccccceEEEE-ccc----CcccceeEEecCCceEEEEeccCch
Confidence 99999999999543321 1111 112233334443 432 3558889999999999999876554
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-22 Score=197.17 Aligned_cols=273 Identities=14% Similarity=0.207 Sum_probs=215.1
Q ss_pred cCcceeee--cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCC-EEEEEeCCCcEEEEEe
Q 005646 203 QGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQV 279 (686)
Q Consensus 203 ~~~~~~~s--~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~vWd~ 279 (686)
++.+.+++ +.-..+++++.|++++||.++...... .+.+.--..+|.+.+|.|+|. .++++|.-..++.||+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-----lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-----LQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChh-----heeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence 34455554 455688999999999999998765432 344555678999999999999 9999999999999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC-CCee
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS-GEIL 358 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~ 358 (686)
.+.+.. ++..+.|+. ..+.
T Consensus 288 e~ak~~------------------------------------------------------------k~~~~~g~e~~~~e 307 (514)
T KOG2055|consen 288 ETAKVT------------------------------------------------------------KLKPPYGVEEKSME 307 (514)
T ss_pred cccccc------------------------------------------------------------cccCCCCcccchhh
Confidence 877621 122223332 3456
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCC
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ 437 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~ 437 (686)
....++++ +|+..+..|.|.|....+++.+..+..++.|..++|+. ++..|++++.+|.|.+||++...++....-.+
T Consensus 308 ~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G 386 (514)
T KOG2055|consen 308 RFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDG 386 (514)
T ss_pred eeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecC
Confidence 67788988 99999999999999999999999999999999999998 89999999999999999999998886555455
Q ss_pred cE--EEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC--CCcEEE
Q 005646 438 IV--TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA--DSQVRI 513 (686)
Q Consensus 438 ~V--~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~--D~~I~i 513 (686)
.| +++|.+++|.+||+|+..|.|.|||..+....... ........-...|+.++|+| +..+|+.++. ...+|+
T Consensus 387 ~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P--kPik~~dNLtt~Itsl~Fn~-d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 387 SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP--KPIKTVDNLTTAITSLQFNH-DAQILAIASRVKKNALRL 463 (514)
T ss_pred ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCC--CchhhhhhhheeeeeeeeCc-chhhhhhhhhccccceEE
Confidence 44 67888899999999999999999997543211110 00001112235699999999 8888887774 678999
Q ss_pred EeCC------------------cceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 514 LQGP------------------NVIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 514 wd~~------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
.+.+ ++++|+|.+.+||.|.++|.|.+|.+.
T Consensus 464 VHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 464 VHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 8754 458999999999999999999999874
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=197.16 Aligned_cols=228 Identities=18% Similarity=0.257 Sum_probs=181.7
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEee
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTV 302 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~ 302 (686)
..+.+|.+.+...... .---.++|.+++-+|+|.||+.|+..|.|++|.+.+|..
T Consensus 61 p~l~vw~i~k~~~~~q-------~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L------------------ 115 (476)
T KOG0646|consen 61 PLLHVWEILKKDQVVQ-------YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL------------------ 115 (476)
T ss_pred ccccccccCchhhhhh-------hcccccceeeeecCCCceEEEeecccCcEEEEEeccccH------------------
Confidence 3788998876543221 111357899999999999999998999999999999873
Q ss_pred cCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEE
Q 005646 303 NHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWR 381 (686)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd 381 (686)
+..+.+|-..|++|.|+.|+ +|+|||.||.|.+|.
T Consensus 116 --------------------------------------------L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 116 --------------------------------------------LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWL 151 (476)
T ss_pred --------------------------------------------HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEE
Confidence 33446799999999999999 999999999999998
Q ss_pred CC---------CCeeeeEee-CCCCeEEEEEeec-CCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCE
Q 005646 382 VG---------NDHCLRVFP-HSNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG 450 (686)
Q Consensus 382 ~~---------~~~~~~~~~-h~~~V~~v~fsp~-~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~ 450 (686)
+. +-+++..|. |.-+|+.+...+. ...+++|+|.|.++++||+..+.++..+..+..+.+++.+|-++.
T Consensus 152 l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~ 231 (476)
T KOG0646|consen 152 LTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERV 231 (476)
T ss_pred EEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccE
Confidence 73 335677777 9999999998873 357899999999999999999999999999999999999999999
Q ss_pred EEEEecCCcEEEEeCCCCeeeee--------eeEEeeccccCCCC--CeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcce
Q 005646 451 GIVGSMMGDCRFYNVSDNHLELD--------AEICVHSKKKAPCK--RITGFQFLPQDSSKVMVSCADSQVRILQGPNVI 520 (686)
Q Consensus 451 l~~gs~dg~i~iwd~~~~~~~~~--------~~~~~~~~~~~~~~--~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~ 520 (686)
+++|+.+|.|.+.++.+-..+.. ..........+|.. .|++++++-
T Consensus 232 ~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~------------------------ 287 (476)
T KOG0646|consen 232 VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST------------------------ 287 (476)
T ss_pred EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec------------------------
Confidence 99999999999998864331110 00000111233433 677777666
Q ss_pred eEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 521 GKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 521 ~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
||..|++|++||+|.|||+.+.+
T Consensus 288 ----DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 288 ----DGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred ----CccEEEeeCCCCCEEEEecchHH
Confidence 89999999999999999998765
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=214.13 Aligned_cols=233 Identities=19% Similarity=0.305 Sum_probs=188.4
Q ss_pred ecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeee
Q 005646 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEV 288 (686)
Q Consensus 210 s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~ 288 (686)
....+++++++..|.|.+||+.+...+ ...+.|..|+..|+++.|++ ...+|+|||.||+|++||+...+
T Consensus 97 ~~~~NlIAT~s~nG~i~vWdlnk~~rn----k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~----- 167 (839)
T KOG0269|consen 97 QLYSNLIATCSTNGVISVWDLNKSIRN----KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK----- 167 (839)
T ss_pred cchhhhheeecCCCcEEEEecCccccc----hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-----
Confidence 456678999999999999999873221 11345778999999999998 46789999999999999998754
Q ss_pred ccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--
Q 005646 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-- 366 (686)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-- 366 (686)
...++.+....|.+++|+|..
T Consensus 168 ---------------------------------------------------------S~~t~~~nSESiRDV~fsp~~~~ 190 (839)
T KOG0269|consen 168 ---------------------------------------------------------SKSTFRSNSESIRDVKFSPGYGN 190 (839)
T ss_pred ---------------------------------------------------------ccccccccchhhhceeeccCCCc
Confidence 234455677899999999965
Q ss_pred EEEEEECCCcEEEEECCCC-eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE--EEEeccCCcEEEE
Q 005646 367 YLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAV 442 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~-~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~--~~~~~~~~~V~~v 442 (686)
+++++...|.+++||++.. +|...+. |.++|.|+.|+| ++.+||||+.|++|+|||+.+.+. +..+....+|..|
T Consensus 191 ~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rV 269 (839)
T KOG0269|consen 191 KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRV 269 (839)
T ss_pred eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeecceeeee
Confidence 9999999999999999865 5666666 999999999999 999999999999999999987654 3556677899999
Q ss_pred EEccCCCE-EEEEec--CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 443 CYRPDGQG-GIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 443 ~~spdg~~-l~~gs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
.|.|..++ |++++. |-.|+|||++..-+... ....|..-++.++|-..+...+++++.|+.|..-..
T Consensus 270 kWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~-------t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 270 KWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYA-------TFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred eeccCccchhhhhhccccceEEEEeeccccccce-------eeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 99997765 444443 67899999986543321 134467789999999888889999999999876543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=200.93 Aligned_cols=286 Identities=18% Similarity=0.317 Sum_probs=221.4
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
..++||++.|.+|...|.|.+||+|+.||+||||.+.++.++..+.+.. .+.|+.|.+.....+.+++.... ..++..
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp 471 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVGEC-VLIVNP 471 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEecCc-eEEeCc
Confidence 3578999999999999999999999999999999999999999887765 67788888877776666655544 111111
Q ss_pred eec-------------------cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECC---CcEEEE
Q 005646 324 LRR-------------------TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASID---KTVRLW 380 (686)
Q Consensus 324 ~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~D---g~V~iW 380 (686)
..+ ..+...+.|.....+-.++-++..-.|...|..+.|+..| +|++...+ ..|.|+
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 100 1112233343332222333456666799999999999999 99887654 679999
Q ss_pred ECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCC
Q 005646 381 RVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMG 458 (686)
Q Consensus 381 d~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg 458 (686)
++.......-|. ..+.|.++.|+| ...+|+.++. ..|||||+..+.++ .+......|..++++|.|..|++|+.|+
T Consensus 552 QLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 552 QLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred ecccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 998887777775 778999999999 7777777774 57999999987765 4445566789999999999999999999
Q ss_pred cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------------
Q 005646 459 DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP--------------------- 517 (686)
Q Consensus 459 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~--------------------- 517 (686)
.+..||+.-..-. ....+.|...++.++|++ .-.++++++.|+++.|+.+.
T Consensus 630 k~~WfDldlsskP-------yk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 630 KMCWFDLDLSSKP-------YKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred eeEEEEcccCcch-------hHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 9999999755322 122456778899999999 67899999999999998632
Q ss_pred -c------ceeEcCCCCEEEEEeCCCcEEEE
Q 005646 518 -N------VIGKYKDGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 518 -~------~~~~~~dg~~l~sgs~Dg~V~iW 541 (686)
+ ...|+|...+|++++.||+|++|
T Consensus 702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccceEeecccCCCceEEecCCCceEEee
Confidence 0 13489999999999999999999
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=185.74 Aligned_cols=300 Identities=18% Similarity=0.318 Sum_probs=212.7
Q ss_pred cccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEee
Q 005646 247 QAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (686)
Q Consensus 247 ~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (686)
+.|.+.|+++...+ .|+|+++|+.||.|.|||++.......-.. +.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-----------------------------i~---- 86 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-----------------------------IA---- 86 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-----------------------------ee----
Confidence 34899999999988 699999999999999999976541110000 00
Q ss_pred ccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEe
Q 005646 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403 (686)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fs 403 (686)
...|++ ....-.+|.-.|.++.|-|-. .+.++|.|.++++||..+.+....|..++.|.+-+++
T Consensus 87 ---k~~c~v-----------~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamS 152 (397)
T KOG4283|consen 87 ---KHKCIV-----------AKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMS 152 (397)
T ss_pred ---heeeec-----------cccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcC
Confidence 000000 011224799999999999954 9999999999999999999999999999999999999
Q ss_pred ecC--CCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCE-EEEEecCCcEEEEeCCCCe--eee-e---
Q 005646 404 PVD--DNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQG-GIVGSMMGDCRFYNVSDNH--LEL-D--- 473 (686)
Q Consensus 404 p~~--~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~-l~~gs~dg~i~iwd~~~~~--~~~-~--- 473 (686)
|.. ..++++|..|-+||+-|+.++..- .+.+|+..|.++.|+|...+ |++|+.||.|++||++... +.. .
T Consensus 153 p~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 153 PMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred hhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 943 357888888999999999999876 67789999999999997775 6779999999999997541 110 0
Q ss_pred -eeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCcc
Q 005646 474 -AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHD 552 (686)
Q Consensus 474 -~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~ 552 (686)
..........+|.+.+.+++|.. ||.++++.+.|..+++|+...++.....
T Consensus 233 ~k~~p~~~~n~ah~gkvngla~tS----------------------------d~~~l~~~gtd~r~r~wn~~~G~ntl~~ 284 (397)
T KOG4283|consen 233 TKRPPILKTNTAHYGKVNGLAWTS----------------------------DARYLASCGTDDRIRVWNMESGRNTLRE 284 (397)
T ss_pred CccCccccccccccceeeeeeecc----------------------------cchhhhhccCccceEEeecccCcccccc
Confidence 00111112456778888888888 8999999999999999998887743332
Q ss_pred ccccccc--------cccccCCcEEEecCCCC-cCCCCCCCCcccccCCCCCccc--ccCCCccccCccccccCCCCCCC
Q 005646 553 QAKTIRS--------LERFTTNASIAIPWCGL-KCGNAEKEPQLHVSDDDSPENL--AFAPARFSLGQEYVFESFPKGCA 621 (686)
Q Consensus 553 ~~~~~~~--------~~~~~~~~~v~~s~~g~-~~~~~~~g~~l~~~~~~~~~~~--~~spd~~~~~~~~~~~s~d~~~~ 621 (686)
..+.++. .........+.++.++. .+.+.-.|..+..+..|...+. +|-|+ =+..++...+..+.
T Consensus 285 ~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~----fq~~~tg~~d~ni~ 360 (397)
T KOG4283|consen 285 FGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPD----FEQCFTGDMNGNIY 360 (397)
T ss_pred cccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCc----hhhhhccccCCccc
Confidence 2211111 01111134445555433 4455566888888887765554 35666 34456777888888
Q ss_pred CCCC
Q 005646 622 TWPE 625 (686)
Q Consensus 622 ~W~~ 625 (686)
.|.-
T Consensus 361 ~w~p 364 (397)
T KOG4283|consen 361 MWSP 364 (397)
T ss_pred cccc
Confidence 8873
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=202.37 Aligned_cols=267 Identities=19% Similarity=0.333 Sum_probs=210.3
Q ss_pred cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEE-eeCCCEEEEEeCCCcEEEEEeecCee--eee
Q 005646 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKF-SPDGQYLASAGDDGVVRLWQVVEDER--LTE 287 (686)
Q Consensus 211 ~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~f-spdg~~Lasgs~Dg~I~vWd~~~~~~--~~~ 287 (686)
.+++.+++++.|-+|++|+..+.. .....++..|+.-|.|+++ -++..++||||-|+.|.|||++++.. +..
T Consensus 83 ~~~~tlIS~SsDtTVK~W~~~~~~-----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s 157 (735)
T KOG0308|consen 83 GNGKTLISASSDTTVKVWNAHKDN-----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVAS 157 (735)
T ss_pred cCCCceEEecCCceEEEeecccCc-----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhh
Confidence 456789999999999999876543 1234568889999999999 78899999999999999999998742 111
Q ss_pred eccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEec-cCCCCeeEEEeeCCC
Q 005646 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH-GHSGEILDLSWSKNN 366 (686)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~ 366 (686)
+.. .....+. |+...|++++-++.+
T Consensus 158 ~n~------------------------------------------------------~t~~sl~sG~k~siYSLA~N~t~ 183 (735)
T KOG0308|consen 158 FNN------------------------------------------------------VTVNSLGSGPKDSIYSLAMNQTG 183 (735)
T ss_pred ccc------------------------------------------------------cccccCCCCCccceeeeecCCcc
Confidence 110 1122223 799999999999999
Q ss_pred -EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEE
Q 005646 367 -YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVC 443 (686)
Q Consensus 367 -~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~ 443 (686)
.+++|+..+.+++||.++++.+..+. |...|.++..++ ++..+++++.||+|++||+...+++ .+..|...|.++.
T Consensus 184 t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~ 262 (735)
T KOG0308|consen 184 TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ 262 (735)
T ss_pred eEEEecCcccceEEeccccccceeeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEe
Confidence 99999999999999999998877776 999999999999 9999999999999999999999887 5667888999999
Q ss_pred EccCCCEEEEEecCCcEEEEeCCCCe-eeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCccee-
Q 005646 444 YRPDGQGGIVGSMMGDCRFYNVSDNH-LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG- 521 (686)
Q Consensus 444 ~spdg~~l~~gs~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~- 521 (686)
.+|+=+.+++|+.||.|..=|+++.. ..+ ++ ....+|..+..+..+ +-+-+++.|+.|+-|-..-..+
T Consensus 263 ~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tl---ic------k~daPv~~l~~~~~~-~~~WvtTtds~I~rW~~~~~~~l 332 (735)
T KOG0308|consen 263 SSPSFTHVYSGGRDGNIYRTDLRNPAKSTL---IC------KEDAPVLKLHLHEHD-NSVWVTTTDSSIKRWKLEPDIAL 332 (735)
T ss_pred eCCCcceEEecCCCCcEEecccCCchhheE---ee------cCCCchhhhhhcccc-CCceeeeccccceecCCcccccc
Confidence 99999999999999999999998742 111 11 112445556665422 3347777888888885431111
Q ss_pred --------------------------------------EcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 522 --------------------------------------KYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 522 --------------------------------------~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.-.|.++++|=..+|++.+||+-...
T Consensus 333 ~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~ 396 (735)
T KOG0308|consen 333 SVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACV 396 (735)
T ss_pred ccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeee
Confidence 11188999999999999999997654
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-22 Score=183.87 Aligned_cols=210 Identities=22% Similarity=0.371 Sum_probs=171.8
Q ss_pred cccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
..|+..|..+...--|+.|||++.|++|+|+.+..+..
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------------------------ 45 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------------------------ 45 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------------------------
Confidence 46999999998888899999999999999999876541
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC--CC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEE
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK--NN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCV 400 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v 400 (686)
.+++.+|.||.++|..++|.. -| +|++++.||.|.||.-.+++-.+... |...|++|
T Consensus 46 -----------------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV 108 (299)
T KOG1332|consen 46 -----------------SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSV 108 (299)
T ss_pred -----------------ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceee
Confidence 136788999999999999976 45 99999999999999998886544433 99999999
Q ss_pred EEeecC-CCEEEEEEcCCcEEEEecCCC-c---EEEEeccCCcEEEEEEccC---C-----------CEEEEEecCCcEE
Q 005646 401 HFNPVD-DNYFISGSIDGKVRIWAVLSC-H---VVDWVDIRQIVTAVCYRPD---G-----------QGGIVGSMMGDCR 461 (686)
Q Consensus 401 ~fsp~~-~~~l~sgs~Dg~V~iwd~~~~-~---~~~~~~~~~~V~~v~~spd---g-----------~~l~~gs~dg~i~ 461 (686)
+|.|.. +-.|++++.||+|.|.+.++. . ......|.-.|++++|.|. | +.|++|+.|..|+
T Consensus 109 ~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vk 188 (299)
T KOG1332|consen 109 AWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVK 188 (299)
T ss_pred cccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcccee
Confidence 999943 457889999999999998765 1 2234568888999999995 5 5699999999999
Q ss_pred EEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEE
Q 005646 462 FYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 462 iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iW 541 (686)
||+...+..... .....|...|..++|.|..+- -..+||++|.||+|.||
T Consensus 189 iW~~~~~~w~~e------~~l~~H~dwVRDVAwaP~~gl------------------------~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 189 IWKFDSDSWKLE------RTLEGHKDWVRDVAWAPSVGL------------------------PKSTIASCSQDGTVIIW 238 (299)
T ss_pred eeecCCcchhhh------hhhhhcchhhhhhhhccccCC------------------------CceeeEEecCCCcEEEE
Confidence 999988754432 225668899999999994211 23689999999999999
Q ss_pred eCCC
Q 005646 542 NCIG 545 (686)
Q Consensus 542 d~~~ 545 (686)
....
T Consensus 239 t~~~ 242 (299)
T KOG1332|consen 239 TKDE 242 (299)
T ss_pred EecC
Confidence 9874
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.7e-21 Score=198.21 Aligned_cols=308 Identities=18% Similarity=0.243 Sum_probs=213.2
Q ss_pred CccceeeccceEEEEEcCCccccc-----------------cccccC-------ceecccCCceEEEEEeeCCCEEEEEe
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKEL-----------------SALYKG-------QEIQAHDGSILTMKFSPDGQYLASAG 269 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~-----------------~~~~~~-------~~l~~H~~~I~~l~fspdg~~Lasgs 269 (686)
-++++++.|..|+||.+.-...+- ..+... ..+.||+..|.++.|+|.+..|++++
T Consensus 207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSAS 286 (764)
T KOG1063|consen 207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSAS 286 (764)
T ss_pred EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecc
Confidence 378899999999999875432100 000000 12459999999999999999999999
Q ss_pred CCCcEEEEEeecCe--eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeC---CccccccC
Q 005646 270 DDGVVRLWQVVEDE--RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFP---PKVFRILE 344 (686)
Q Consensus 270 ~Dg~I~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 344 (686)
.|.++.+|...+.. -...+...+..... .......+.+.....+. .+..+....|. ...|
T Consensus 287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a--------~GF~g~lw~~n~~~ii~---~g~~Gg~hlWkt~d~~~w---- 351 (764)
T KOG1063|consen 287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSA--------GGFWGGLWSPNSNVIIA---HGRTGGFHLWKTKDKTFW---- 351 (764)
T ss_pred cCcceEEEecCCccceEEEEEEeecccccc--------cceeeEEEcCCCCEEEE---ecccCcEEEEeccCccce----
Confidence 99999999876542 22222222111111 01111222222211111 11112222222 1111
Q ss_pred CCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCe-eeeEee----CCCCeEEEEEeecCCCEEEEEEcCCc
Q 005646 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-CLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGK 418 (686)
Q Consensus 345 ~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~-~~~~~~----h~~~V~~v~fsp~~~~~l~sgs~Dg~ 418 (686)
.+...+.||.+.|.+++|+|.| +|++.|.|.|-||+-.-..+ .-..+. |...++|++|-+ ....|++|.....
T Consensus 352 ~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 352 TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKV 430 (764)
T ss_pred eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeeccccee
Confidence 2344567999999999999999 99999999999998654221 122222 899999999998 6888999999999
Q ss_pred EEEEecCC-------------------------------------------C----------------------------
Q 005646 419 VRIWAVLS-------------------------------------------C---------------------------- 427 (686)
Q Consensus 419 V~iwd~~~-------------------------------------------~---------------------------- 427 (686)
+|+|+... +
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 99997632 0
Q ss_pred ------cEEEEeccCCcEEEEEEccCCCEEEEEecCC-----cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 428 ------HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG-----DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 428 ------~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
++..+++|...|++++.+|+|+.+|+++... .|++|+..+-.... ....|.-.|+.++|+|
T Consensus 511 ~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~--------~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 511 QNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ--------ELEGHSLTVTRLAFSP 582 (764)
T ss_pred HhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh--------eecccceEEEEEEECC
Confidence 0112446677799999999999999987654 49999987655432 2345677899999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCcc-------------------eeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 497 QDSSKVMVSCADSQVRILQGPNV-------------------IGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 497 ~~~~~l~~~s~D~~I~iwd~~~~-------------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
++++|++.+.|.++.+|..... ..|.|++++++|+|.|.+|+||.....
T Consensus 583 -dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 583 -DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred -CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 8999999999999999975321 357889999999999999999999876
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.7e-22 Score=196.28 Aligned_cols=241 Identities=17% Similarity=0.253 Sum_probs=183.9
Q ss_pred CCCccceeeccceEEEEEcCCccccccccc--------------cCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEE
Q 005646 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALY--------------KGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRL 276 (686)
Q Consensus 212 ~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~--------------~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~v 276 (686)
.|+++|.|+.+..|.|||+.-...-+..+. ....-.+|+..|..|+|+.+ .+.|||||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 467999999999999999864332211111 11223579999999999885 568999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.+++ |...+..|.+.
T Consensus 271 WD~~~g~--------------------------------------------------------------p~~s~~~~~k~ 288 (463)
T KOG0270|consen 271 WDVDTGK--------------------------------------------------------------PKSSITHHGKK 288 (463)
T ss_pred EEcCCCC--------------------------------------------------------------cceehhhcCCc
Confidence 9999986 44555679999
Q ss_pred eeEEEeeCCC--EEEEEECCCcEEEEECCCC-eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC-cEE-E
Q 005646 357 ILDLSWSKNN--YLLSASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVV-D 431 (686)
Q Consensus 357 V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~-~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~-~~~-~ 431 (686)
|.+++|+|.. .|++|+.|++|.+.|.+.. ..-..++..+.|-.++|+|.....|+++..||+|+-+|+|.. +.+ .
T Consensus 289 Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt 368 (463)
T KOG0270|consen 289 VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT 368 (463)
T ss_pred eeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE
Confidence 9999999987 9999999999999999843 334456678999999999988899999999999999999976 444 6
Q ss_pred EeccCCcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCc
Q 005646 432 WVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (686)
Q Consensus 432 ~~~~~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~ 510 (686)
...|..+|.+|++++.- .++++++.|+.|++|++.......... +....++..|+++.|+.
T Consensus 369 ~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~------~~~~~~rl~c~~~~~~~------------ 430 (463)
T KOG0270|consen 369 LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE------HSFKLGRLHCFALDPDV------------ 430 (463)
T ss_pred EEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc------ccccccceeecccCCCc------------
Confidence 77899999999999854 468889999999999997654432111 11112346778888853
Q ss_pred EEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 511 VRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 511 I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.-+|+.|+..+.++|||+.+..
T Consensus 431 ---------------a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 431 ---------------AFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ---------------ceEEEecCccceEEEeecccCh
Confidence 3445556666666666666543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=189.11 Aligned_cols=221 Identities=24% Similarity=0.346 Sum_probs=176.6
Q ss_pred ecccCCceEEEEEeeCC--CEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 246 IQAHDGSILTMKFSPDG--QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 246 l~~H~~~I~~l~fspdg--~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
..+|.+.|+.+.-++-| .+.|+-++.|.|+||++...- ..+..+...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l--~~l~~~~~~----------------------------- 195 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL--NALSEPGLE----------------------------- 195 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhh--hhhcCcccc-----------------------------
Confidence 34688888888887754 477778899999999986422 111100000
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC--CEEEEEECCCcEEEEECCCCeeee----EeeCCCCe
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--NYLLSASIDKTVRLWRVGNDHCLR----VFPHSNYV 397 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~~L~s~s~Dg~V~iWd~~~~~~~~----~~~h~~~V 397 (686)
+-+...+|+.++.+|.+.=+.|.|||- |.|++|..-+.|++|...++.... ...|+..|
T Consensus 196 ---------------~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SV 260 (440)
T KOG0302|consen 196 ---------------VKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSV 260 (440)
T ss_pred ---------------ccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccch
Confidence 000113689999999999999999994 489999999999999999876432 22399999
Q ss_pred EEEEEeecCCCEEEEEEcCCcEEEEecCCC---cEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeee
Q 005646 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSC---HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDA 474 (686)
Q Consensus 398 ~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~---~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~ 474 (686)
..++|+|.....|++||-||+|+|||+|.+ .++....|...|+.|.|+.+-.+||+|+.||+++|||++.-+...
T Consensus 261 EDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~-- 338 (440)
T KOG0302|consen 261 EDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ-- 338 (440)
T ss_pred hhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCC--
Confidence 999999988899999999999999999988 567778899999999999988899999999999999998755431
Q ss_pred eEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 475 EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 475 ~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
.....+.|..+|+++.|+|.+...+++++.|.+|.|||+.
T Consensus 339 ---pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 339 ---PVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ---cceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 1112456789999999999999999999999999999953
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-21 Score=182.07 Aligned_cols=283 Identities=18% Similarity=0.261 Sum_probs=206.2
Q ss_pred eeecccCcceeeecC---CCccceeeccceEEEEEcCCcc-ccccccc-------cCceecccCCceEEEEEee-CCCEE
Q 005646 198 CVVDKQGEGERVRLN---EEDAMFCSKVQRVKVYHCKKRS-KELSALY-------KGQEIQAHDGSILTMKFSP-DGQYL 265 (686)
Q Consensus 198 ~~~~~~~~~~~~s~~---~~~l~~g~~d~~v~vw~~~~~~-~~~~~~~-------~~~~l~~H~~~I~~l~fsp-dg~~L 265 (686)
..-.|.+.++++..+ +.++++|+.||.|.|||++... .+.+.+. ..+.-.+|+-.|.++.|-| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 334677778777644 5799999999999999997654 1211111 1223357889999999999 66688
Q ss_pred EEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCC
Q 005646 266 ASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEK 345 (686)
Q Consensus 266 asgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (686)
.+++.|.+++|||.++.+....++
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-------------------------------------------------------- 141 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-------------------------------------------------------- 141 (397)
T ss_pred ecccccceEEEeecccceeeEEee--------------------------------------------------------
Confidence 999999999999999877444333
Q ss_pred CeEEeccCCCCeeEEEeeCC---C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEE
Q 005646 346 PLHEFHGHSGEILDLSWSKN---N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVR 420 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~~---~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~ 420 (686)
-.+.|..-+++|- . ++|+|..|-.|++-|+.+|.+...+. |.+.|.++.|+|...-.|++|+.||.||
T Consensus 142 -------me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ir 214 (397)
T KOG4283|consen 142 -------MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIR 214 (397)
T ss_pred -------cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEE
Confidence 2234555556653 2 78888899999999999999999998 9999999999997777899999999999
Q ss_pred EEecCCC-cEE---------------EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE-eecccc
Q 005646 421 IWAVLSC-HVV---------------DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC-VHSKKK 483 (686)
Q Consensus 421 iwd~~~~-~~~---------------~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~-~~~~~~ 483 (686)
+||++.. -+. .-..|.+.|..++|+.||.++++.+.|..+++|+...+.-....... .+....
T Consensus 215 lWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~ 294 (397)
T KOG4283|consen 215 LWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT 294 (397)
T ss_pred EEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc
Confidence 9999854 111 12346677999999999999999999999999999876543221111 111111
Q ss_pred CCC-----CCeEEEEEeCCCCC-eEEEEeCCCcEEEEeCC----cceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 484 APC-----KRITGFQFLPQDSS-KVMVSCADSQVRILQGP----NVIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 484 ~~~-----~~I~~l~fsp~~~~-~l~~~s~D~~I~iwd~~----~~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
... ..-.-+.+.|.++. .|+.......|+.|+.. ++..+-++-+...+|..|+.|+.|-.
T Consensus 295 ~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 295 SFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 110 11122445564443 45556677788999865 34556678889999999999999987
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=194.57 Aligned_cols=222 Identities=20% Similarity=0.266 Sum_probs=182.2
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
+...++.|.+++.|+..+.+++|.+.... ....+.+|=.+|+|+.|+-||.+|+|||.||.|++|.+..--.
T Consensus 86 al~s~n~G~~l~ag~i~g~lYlWelssG~-------LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~- 157 (476)
T KOG0646|consen 86 ALASSNLGYFLLAGTISGNLYLWELSSGI-------LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS- 157 (476)
T ss_pred eeecCCCceEEEeecccCcEEEEEecccc-------HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc-
Confidence 34445677788888899999999665543 3456788999999999999999999999999999999854210
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
.+. +...+|++.|..|.-+|+++...+.
T Consensus 158 ----------------a~~------------------------------------~~~~~p~~~f~~HtlsITDl~ig~G 185 (476)
T KOG0646|consen 158 ----------------ADN------------------------------------DHSVKPLHIFSDHTLSITDLQIGSG 185 (476)
T ss_pred ----------------ccc------------------------------------CCCccceeeeccCcceeEEEEecCC
Confidence 000 0012689999999999999999876
Q ss_pred C---EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--------------
Q 005646 366 N---YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-------------- 428 (686)
Q Consensus 366 ~---~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-------------- 428 (686)
+ +|+|+|.|.++++||+..+..+.++.....+++++..| .+..++.|+.+|.|.+.++.+-.
T Consensus 186 g~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~ 264 (476)
T KOG0646|consen 186 GTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEE 264 (476)
T ss_pred CccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccc
Confidence 5 99999999999999999999999999999999999999 89999999999999998875322
Q ss_pred ---EEEEeccCC--cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 429 ---VVDWVDIRQ--IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 429 ---~~~~~~~~~--~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
...+.+|.. .|+|++++-||..|++|+.||.++|||+...++..... ...++|+-+++.|
T Consensus 265 ~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~--------~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 265 NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ--------TSKGPVTNLQINP 329 (476)
T ss_pred cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh--------hhccccceeEeec
Confidence 224556776 89999999999999999999999999998776543221 1337799999977
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=199.33 Aligned_cols=326 Identities=16% Similarity=0.203 Sum_probs=241.3
Q ss_pred Ccc--eeeecCCC-ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEee
Q 005646 204 GEG--ERVRLNEE-DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (686)
Q Consensus 204 ~~~--~~~s~~~~-~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~ 280 (686)
+.+ .+|+.||. .+++|+..|.+.+||+++.... .+...+|.+.|..+.|-|....|+|++.|..+++|=.+
T Consensus 245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~------~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI------NVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee------eeeeccccCCcccceecCCCceEeeccCCCceeEEEee
Confidence 444 45666786 6677888899999999876542 23344799999999999999999999999999999777
Q ss_pred cCe----eeeeeccCCCCCcceEEeecCCCCceeeeecc--------------ccce----------e-----------E
Q 005646 281 EDE----RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK--------------EKIS----------I-----------L 321 (686)
Q Consensus 281 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~----------~-----------~ 321 (686)
++. .++....+..++.|+.|.......+.....+. .... . +
T Consensus 319 ~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i 398 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI 398 (910)
T ss_pred CCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence 543 34455667778888876533222111111110 0000 0 0
Q ss_pred EEee--ccC-----CceEEEeCC---ccccccCCCe--EEe-----ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECC
Q 005646 322 KSLR--RTS-----ESACVVFPP---KVFRILEKPL--HEF-----HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG 383 (686)
Q Consensus 322 ~~~~--~~~-----~~~~~~~~~---~~~~~~~~~~--~~l-----~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~ 383 (686)
..+. ... +..+...+. ..|+...+.. +.+ +.-...+++++.++.| +.+.|+..|+|-+|+++
T Consensus 399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ 478 (910)
T KOG1539|consen 399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ 478 (910)
T ss_pred eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence 0000 000 000000000 1122222221 111 1234678899999999 88899999999999999
Q ss_pred CCeeeeEe----eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCc
Q 005646 384 NDHCLRVF----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGD 459 (686)
Q Consensus 384 ~~~~~~~~----~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~ 459 (686)
+|-....| .|..+|+.++... .++.+++++.+|-+.+||..+...+........++++.++.....++++..|-.
T Consensus 479 SGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~ 557 (910)
T KOG1539|consen 479 SGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFS 557 (910)
T ss_pred cCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCcee
Confidence 99988888 3999999999987 788999999999999999999998888888999999999999999999999999
Q ss_pred EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc--------------eeEcCC
Q 005646 460 CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV--------------IGKYKD 525 (686)
Q Consensus 460 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~--------------~~~~~d 525 (686)
|+++|+.+.+... ...+|..+|+++.|+| ++++|++++.|++||+||+++. +.++|+
T Consensus 558 I~vvD~~t~kvvR--------~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPn 628 (910)
T KOG1539|consen 558 IRVVDVVTRKVVR--------EFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPN 628 (910)
T ss_pred EEEEEchhhhhhH--------HhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCC
Confidence 9999998876543 3567889999999999 9999999999999999998753 679999
Q ss_pred CCEEEEEeCC-CcEEEEeCCC
Q 005646 526 GKHIVSAGED-SNVYMWNCIG 545 (686)
Q Consensus 526 g~~l~sgs~D-g~V~iWd~~~ 545 (686)
|.+|||...| .-|++|.-.+
T Consensus 629 gD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 629 GDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCEEEEEEecCceEEEEEchh
Confidence 9999999999 6699997554
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=179.58 Aligned_cols=214 Identities=19% Similarity=0.268 Sum_probs=159.2
Q ss_pred cccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
.+|..-|+++.|.+.|+.+|||+.|++|+|||.......-
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W---------------------------------------- 49 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTW---------------------------------------- 49 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCce----------------------------------------
Confidence 4699999999999999999999999999999975433100
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC---EEEEEECCCcEEEEECCCC-------e--eeeEee-C
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN---YLLSASIDKTVRLWRVGND-------H--CLRVFP-H 393 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~~-------~--~~~~~~-h 393 (686)
......+.|.+.|..+.|.+.. .+|+++.|+++.||.-... + ...++. .
T Consensus 50 ------------------~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Ds 111 (361)
T KOG2445|consen 50 ------------------SCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDS 111 (361)
T ss_pred ------------------EEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecC
Confidence 1234567899999999997653 8999999999999976211 1 122333 6
Q ss_pred CCCeEEEEEeec-CCCEEEEEEcCCcEEEEecCCCcEE-E-------------EeccCCcEEEEEEcc---CCCEEEEEe
Q 005646 394 SNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVV-D-------------WVDIRQIVTAVCYRP---DGQGGIVGS 455 (686)
Q Consensus 394 ~~~V~~v~fsp~-~~~~l~sgs~Dg~V~iwd~~~~~~~-~-------------~~~~~~~V~~v~~sp---dg~~l~~gs 455 (686)
...|+.|.|.|. -+-.|++++.||.||||+....--+ . .-.+..+..|+.|+| ...+||+|+
T Consensus 112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs 191 (361)
T KOG2445|consen 112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGS 191 (361)
T ss_pred CcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEc
Confidence 789999999994 3668999999999999988654211 1 112456678999998 456888887
Q ss_pred cC-----CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEE
Q 005646 456 MM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIV 530 (686)
Q Consensus 456 ~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~ 530 (686)
.+ +.++||....+........ ....|..+|++++|.|.-+. ....||
T Consensus 192 ~e~a~~~~~~~Iye~~e~~rKw~kva----~L~d~~dpI~di~wAPn~Gr------------------------~y~~lA 243 (361)
T KOG2445|consen 192 DEDAPHLNKVKIYEYNENGRKWLKVA----ELPDHTDPIRDISWAPNIGR------------------------SYHLLA 243 (361)
T ss_pred ccCCccccceEEEEecCCcceeeeeh----hcCCCCCcceeeeeccccCC------------------------ceeeEE
Confidence 76 5788998766543222111 23367899999999994322 457899
Q ss_pred EEeCCCcEEEEeCCCCC
Q 005646 531 SAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 531 sgs~Dg~V~iWd~~~~~ 547 (686)
+++.|| |+||++....
T Consensus 244 vA~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVAR 259 (361)
T ss_pred EeecCc-EEEEEEeecc
Confidence 999999 9999998643
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=193.21 Aligned_cols=158 Identities=24% Similarity=0.362 Sum_probs=127.8
Q ss_pred eccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC
Q 005646 350 FHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 350 l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~ 426 (686)
..+|+..|.+|+|+..- .|||||.|++|++||+.+++|...+. |.+.|.+++|+|....+|++|+.|++|++.|.|.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 45799999999998765 99999999999999999999999999 8999999999998999999999999999999995
Q ss_pred CcE-EEEeccCCcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCe-eeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 427 CHV-VDWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNH-LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 427 ~~~-~~~~~~~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
... -......+.|..++|.|.. ..+++++.||+++-+|++... +.. ..++|...|.++.+++..+.+++
T Consensus 319 ~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw--------t~~AHd~~ISgl~~n~~~p~~l~ 390 (463)
T KOG0270|consen 319 PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW--------TLKAHDDEISGLSVNIQTPGLLS 390 (463)
T ss_pred ccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee--------EEEeccCCcceEEecCCCCccee
Confidence 332 2445567889999999954 567788899999999998763 222 24568889999999996444444
Q ss_pred EEeCCCcEEEEe
Q 005646 504 VSCADSQVRILQ 515 (686)
Q Consensus 504 ~~s~D~~I~iwd 515 (686)
+++.|+.|++|+
T Consensus 391 t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 391 TASTDKVVKLWK 402 (463)
T ss_pred eccccceEEEEe
Confidence 444444444443
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=179.94 Aligned_cols=257 Identities=20% Similarity=0.276 Sum_probs=188.4
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee--CCCEEEEEeCCCcEEEEEeecCe
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
...|.+.|+++++++.|++|+||+..+.. .........++|.+.|+.+.|.+ -|+.+|+++.|+++.||.-....
T Consensus 18 dVs~D~~GRRmAtCSsDq~vkI~d~~~~s---~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~ 94 (361)
T KOG2445|consen 18 DVSFDFYGRRMATCSSDQTVKIWDSTSDS---GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS 94 (361)
T ss_pred eeeecccCceeeeccCCCcEEEEeccCCC---CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence 35677889999999999999999975533 23344556789999999999965 49999999999999999753211
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
++.+.. . -....++......|+++.|.
T Consensus 95 ----~~~~~~------------------------~-------------------------Wv~~ttl~DsrssV~DV~Fa 121 (361)
T KOG2445|consen 95 ----EEAHGR------------------------R-------------------------WVRRTTLVDSRSSVTDVKFA 121 (361)
T ss_pred ----cccccc------------------------e-------------------------eEEEEEeecCCcceeEEEec
Confidence 000000 0 01234556678899999999
Q ss_pred CCC---EEEEEECCCcEEEEECCCCeeee------Eee--------CCCCeEEEEEeec--CCCEEEEEEcC-----CcE
Q 005646 364 KNN---YLLSASIDKTVRLWRVGNDHCLR------VFP--------HSNYVTCVHFNPV--DDNYFISGSID-----GKV 419 (686)
Q Consensus 364 ~~~---~L~s~s~Dg~V~iWd~~~~~~~~------~~~--------h~~~V~~v~fsp~--~~~~l~sgs~D-----g~V 419 (686)
|.. .|++++.||+||||+.-.---+. .++ +.....|+.|+|. ...+|+.|+.+ +.+
T Consensus 122 P~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~ 201 (361)
T KOG2445|consen 122 PKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKV 201 (361)
T ss_pred chhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccce
Confidence 975 89999999999999875433222 222 5667899999983 34678888866 589
Q ss_pred EEEecCCCc-----EEEEeccCCcEEEEEEccC----CCEEEEEecCCcEEEEeCCCCe------------eeeeeeEEe
Q 005646 420 RIWAVLSCH-----VVDWVDIRQIVTAVCYRPD----GQGGIVGSMMGDCRFYNVSDNH------------LELDAEICV 478 (686)
Q Consensus 420 ~iwd~~~~~-----~~~~~~~~~~V~~v~~spd----g~~l~~gs~dg~i~iwd~~~~~------------~~~~~~~~~ 478 (686)
.||...... +-.+.+|..+|+.++|.|+ -..||+++.|| |+||++.... .....++..
T Consensus 202 ~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~ 280 (361)
T KOG2445|consen 202 KIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEK 280 (361)
T ss_pred EEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEE
Confidence 999775432 2256689999999999994 35799999999 9999987421 122233334
Q ss_pred eccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
......|.+.|..+.|.- .|..|++.|.||.||+|..+-..
T Consensus 281 vs~~~~H~~~VWrv~wNm----------------------------tGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 281 VSELDDHNGEVWRVRWNM----------------------------TGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred eeeccCCCCceEEEEEee----------------------------eeeEEeecCCCceeeehhhhhhh
Confidence 444556777888888877 78999999999999999876543
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-21 Score=200.27 Aligned_cols=218 Identities=18% Similarity=0.311 Sum_probs=183.5
Q ss_pred CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccC
Q 005646 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 212 ~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
++..+++|+.|..|.+|..... .+...|++|+..|.|+....++. |+|||.|.+++||....
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~-------~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---------- 131 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQA-------EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---------- 131 (745)
T ss_pred cCcceEeecccceEEEEecCCC-------CchhhhhccccceeeeecCCcCc-eEecccccceEEecchh----------
Confidence 3346899999999999965543 33567999999999999888887 99999999999998743
Q ss_pred CCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEE
Q 005646 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSA 371 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~ 371 (686)
....+.+|...|++++.-|.+.++||
T Consensus 132 ------------------------------------------------------l~~~l~gH~asVWAv~~l~e~~~vTg 157 (745)
T KOG0301|consen 132 ------------------------------------------------------LVYSLQGHTASVWAVASLPENTYVTG 157 (745)
T ss_pred ------------------------------------------------------hhcccCCcchheeeeeecCCCcEEec
Confidence 23446799999999999999999999
Q ss_pred ECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCE
Q 005646 372 SIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG 450 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~ 450 (686)
|.|++|++|.- ++++++|. |.+.|..+++-| +..|++++.||.|++|++....+....+|..-|.++++.+++..
T Consensus 158 saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGL 233 (745)
T ss_pred cCcceeeeccC--CchhhhhccchhheeeeEEec--CCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCe
Confidence 99999999975 88889998 999999999986 56799999999999999966667789999999999998888899
Q ss_pred EEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 451 GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 451 l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
+++++.|++++||+.. .+.+.. .+ +...|.++.+.+ ..-+++|+.||.||||...
T Consensus 234 Ivs~gEDrtlriW~~~--e~~q~I--~l------PttsiWsa~~L~--NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD--ECVQVI--TL------PTTSIWSAKVLL--NGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEecCCceEEEeecC--ceEEEE--ec------CccceEEEEEee--CCCEEEeccCceEEEEEec
Confidence 9999999999999986 333221 21 224588888887 2578899999999999643
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-21 Score=198.63 Aligned_cols=279 Identities=19% Similarity=0.283 Sum_probs=208.4
Q ss_pred CccceeeccceEEEEEcCCccc-----------cccc-cccC------------------ceecccCCceEEEEEeeCCC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSK-----------ELSA-LYKG------------------QEIQAHDGSILTMKFSPDGQ 263 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~-----------~~~~-~~~~------------------~~l~~H~~~I~~l~fspdg~ 263 (686)
..+++++.|++|++|++..... ++.. .+.. ...-+....|.+++.+|+|+
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence 4578999999999999865111 1100 0000 01123445799999999999
Q ss_pred EEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCcccccc
Q 005646 264 YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL 343 (686)
Q Consensus 264 ~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (686)
+||+|..-|++|||++.+.+....+..++..+.|+.++..............+. .+. +++.+- .
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdR--lIH-----------V~Dv~r---n 536 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDR--LIH-----------VYDVKR---N 536 (1080)
T ss_pred eecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCc--eEE-----------EEeccc---c
Confidence 999999999999999999998888888888888877765443322111222221 111 111111 0
Q ss_pred CCCeEEeccCCCCeeEEEeeCCC---EEEEEECCCcEEEEECCCCeeeeEee------CCCCeEEEEEeecCCCEEEEEE
Q 005646 344 EKPLHEFHGHSGEILDLSWSKNN---YLLSASIDKTVRLWRVGNDHCLRVFP------HSNYVTCVHFNPVDDNYFISGS 414 (686)
Q Consensus 344 ~~~~~~l~~h~~~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~~~~~~~~~------h~~~V~~v~fsp~~~~~l~sgs 414 (686)
-.+++++.+|...|+++.|..+| .+++++.|+.|.+--.+...-...|. ....+..|+..| +.+++++++
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~c 615 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVC 615 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEe
Confidence 13678899999999999998877 89999999988654333221122222 246789999999 999999999
Q ss_pred cCCcEEEEecCCCcEEEEe----ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeE
Q 005646 415 IDGKVRIWAVLSCHVVDWV----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (686)
Q Consensus 415 ~Dg~V~iwd~~~~~~~~~~----~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~ 490 (686)
.|..|||||+.+++.+..+ ++.+....+...|.|.|+++.+.|.++.+||..++.+.. ...+|...|+
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA--------~m~GHsE~VT 687 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA--------QMTGHSEAVT 687 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh--------hhcCcchhee
Confidence 9999999999999988655 355678889999999999999999999999999998764 2456778899
Q ss_pred EEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 491 GFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 491 ~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
++.|.+ |.++|++.+.||.|.||.+..
T Consensus 688 G~kF~n----------------------------DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 688 GVKFLN----------------------------DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeecc----------------------------cchhheeecCCceEEEEECch
Confidence 999999 899999999999999999865
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-20 Score=200.18 Aligned_cols=236 Identities=19% Similarity=0.295 Sum_probs=190.1
Q ss_pred cccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
.+|+..-+.|+|.|+|++|.|++.||.|++|+......
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------------------------------ 47 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------------------------------ 47 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------------------------------------------
Confidence 36999999999999999999999999999998765420
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeec
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV 405 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~ 405 (686)
.| ..+.-+...|.+++... ++|++++.+++|.+|.+.++..-..+. ..-++++++|+-
T Consensus 48 ------------------~P-~ti~~~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g- 106 (933)
T KOG1274|consen 48 ------------------EP-ETIDISGELVSSIACYS-NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG- 106 (933)
T ss_pred ------------------CC-chhhccCceeEEEeecc-cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-
Confidence 00 11112666777777533 389999999999999999887665554 678899999998
Q ss_pred CCCEEEEEEcCCcEEEEecCCCcE-EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccC
Q 005646 406 DDNYFISGSIDGKVRIWAVLSCHV-VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (686)
Q Consensus 406 ~~~~l~sgs~Dg~V~iwd~~~~~~-~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 484 (686)
++++++.||.|-.|++-++.+... ..+.+|.++|.++.|+|.+++||+.+.||.|+|||+.++.+.....-........
T Consensus 107 ~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~ 186 (933)
T KOG1274|consen 107 SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI 186 (933)
T ss_pred CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc
Confidence 999999999999999999987654 4788999999999999999999999999999999999876543221111110111
Q ss_pred CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC-----------------cceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-----------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 485 ~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~-----------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
....+..++|+| ++..+++.+.|+.|.+|+.. +.++|+|+|+|||+++.||.|.|||+++-
T Consensus 187 ~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 187 LSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred ccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence 134577899999 77888899999999999743 35789999999999999999999999973
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-20 Score=168.32 Aligned_cols=215 Identities=21% Similarity=0.337 Sum_probs=156.1
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee-eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT-EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
.....|.+++|+|.|.+.|.|+..+++||-....-..+. ..+....++. +
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~-v---------------------------- 80 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPS-V---------------------------- 80 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCe-E----------------------------
Confidence 356789999999999999999999999987653221110 0000111110 0
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeee-----Eee-CCCCeEE
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLR-----VFP-HSNYVTC 399 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~-----~~~-h~~~V~~ 399 (686)
....-+.|.+.|.|.+|+|+| +|++|+.|++|++.-++...|.. .|. |.+.|..
T Consensus 81 -------------------~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtird 141 (350)
T KOG0641|consen 81 -------------------LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRD 141 (350)
T ss_pred -------------------EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceee
Confidence 112224578888888888888 88888888888877665443321 122 5555555
Q ss_pred EEEee---------------------------------------------cCCCEEEEEEcCCcEEEEecCCCcEEEEec
Q 005646 400 VHFNP---------------------------------------------VDDNYFISGSIDGKVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 400 v~fsp---------------------------------------------~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~ 434 (686)
++|-. -++-+|++|+.|.+||+||++-..++...+
T Consensus 142 l~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~ 221 (350)
T KOG0641|consen 142 LAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLD 221 (350)
T ss_pred eEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeecc
Confidence 55532 046789999999999999999888775543
Q ss_pred c--------CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 435 I--------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 435 ~--------~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
. ...|.+++..|.|++|++|-.|..+.+||++.++.++. ...|...|.++.|+|
T Consensus 222 ~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~--------f~phsadir~vrfsp---------- 283 (350)
T KOG0641|consen 222 NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR--------FHPHSADIRCVRFSP---------- 283 (350)
T ss_pred CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee--------eCCCccceeEEEeCC----------
Confidence 2 25699999999999999999999999999999886542 445778899999999
Q ss_pred CCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 507 ADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 507 ~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
...||++++.|..|++=|++..
T Consensus 284 ------------------~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 284 ------------------GAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred ------------------CceEEEEecccceEEEeecccc
Confidence 6788999999999999998764
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-19 Score=180.99 Aligned_cols=282 Identities=20% Similarity=0.336 Sum_probs=213.1
Q ss_pred eccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCC----
Q 005646 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEID---- 294 (686)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~---- 294 (686)
+.+..+.|||+.+..+. ...+.-...|....|+| +.++++|+|. +.+.+|+...+...+...+-+..
T Consensus 177 s~~h~lSVWdWqk~~~~-------~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~ 248 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKKAKL-------GPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKF 248 (626)
T ss_pred CCccccchhhchhhhcc-------CcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceE
Confidence 55667889999876552 23445667899999999 5667788876 89999999888766655433222
Q ss_pred CcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECC
Q 005646 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASID 374 (686)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~D 374 (686)
+.|+.|..+. . .+.+.+.+.+.+|.....++. +....|.+.|.+|....+|.|++|+.|
T Consensus 249 Vl~v~F~eng-------------d----viTgDS~G~i~Iw~~~~~~~~----k~~~aH~ggv~~L~~lr~GtllSGgKD 307 (626)
T KOG2106|consen 249 VLCVTFLENG-------------D----VITGDSGGNILIWSKGTNRIS----KQVHAHDGGVFSLCMLRDGTLLSGGKD 307 (626)
T ss_pred EEEEEEcCCC-------------C----EEeecCCceEEEEeCCCceEE----eEeeecCCceEEEEEecCccEeecCcc
Confidence 1222232222 1 123455667777777665543 333389999999999999999999999
Q ss_pred CcEEEEECCCC-----------------------------------------eeeeEeeCCCCeEEEEEeecCCCEEEEE
Q 005646 375 KTVRLWRVGND-----------------------------------------HCLRVFPHSNYVTCVHFNPVDDNYFISG 413 (686)
Q Consensus 375 g~V~iWd~~~~-----------------------------------------~~~~~~~h~~~V~~v~fsp~~~~~l~sg 413 (686)
..|..||-.-. -.+.++.|......++.+| +.++|+|+
T Consensus 308 Rki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~ 386 (626)
T KOG2106|consen 308 RKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTC 386 (626)
T ss_pred ceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-Chhheeec
Confidence 99999984111 0111223778889999999 89999999
Q ss_pred EcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 414 SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 414 s~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
+.|+.|+||+ ..++.-......++.++.|+|.| .+|+|+..|...+.|..+..+... + . ...+++.+.
T Consensus 387 gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~-----~---~-d~~~ls~v~ 454 (626)
T KOG2106|consen 387 GQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI-----H---T-DNEQLSVVR 454 (626)
T ss_pred cCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE-----E---e-cCCceEEEE
Confidence 9999999999 55666556678889999999999 999999999999999988554321 1 1 147799999
Q ss_pred EeCCCCCeEEEEeCCCcEEEEeCC-----------------cceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 494 FLPQDSSKVMVSCADSQVRILQGP-----------------NVIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iwd~~-----------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
|+| ++.++++++.|+.|+||-+. +-+.|++|+++|.+-+-|-.|..|...
T Consensus 455 ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 455 YSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred EcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 999 89999999999999999643 236788899999999999999999433
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-21 Score=186.80 Aligned_cols=232 Identities=19% Similarity=0.284 Sum_probs=174.2
Q ss_pred ccceeeccceEEEEEcCCccc---------cccccccCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCee
Q 005646 215 DAMFCSKVQRVKVYHCKKRSK---------ELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~---------~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
..++-+..|+|+||++...-. ......+..++.+|.+.=++|+|||- ...|+||..-+.|++|...++.-
T Consensus 167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W 246 (440)
T KOG0302|consen 167 LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW 246 (440)
T ss_pred eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCce
Confidence 556678889999999754221 11223344577899999999999993 22588888888999999887651
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
.. -...|.+|+..|-+|+|||
T Consensus 247 ~v-----------------------------------------------------------d~~Pf~gH~~SVEDLqWSp 267 (440)
T KOG0302|consen 247 KV-----------------------------------------------------------DQRPFTGHTKSVEDLQWSP 267 (440)
T ss_pred ee-----------------------------------------------------------cCccccccccchhhhccCC
Confidence 00 1133457999999999999
Q ss_pred CC--EEEEEECCCcEEEEECCCC---eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc---EE-EEecc
Q 005646 365 NN--YLLSASIDKTVRLWRVGND---HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH---VV-DWVDI 435 (686)
Q Consensus 365 ~~--~L~s~s~Dg~V~iWd~~~~---~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~---~~-~~~~~ 435 (686)
.. .|+|||.||+|+|||++.+ .++.+-.|++.|+.|.|+. ...+|++|+.||+++|||+++-+ .+ .+..|
T Consensus 268 tE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H 346 (440)
T KOG0302|consen 268 TEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH 346 (440)
T ss_pred ccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEec
Confidence 76 9999999999999999988 5666656999999999998 77799999999999999998654 33 67789
Q ss_pred CCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCee------e-------eeeeEEeeccccCCCCCeEEEEEeCCCCCe
Q 005646 436 RQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHL------E-------LDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (686)
Q Consensus 436 ~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~------~-------~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~ 501 (686)
+.+|++|.|+| +...|++++.|.+|.|||+.-..- . ...++.+. ..-.+.|..+.|+++.+.+
T Consensus 347 k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV---HqGQke~KevhWH~QiPG~ 423 (440)
T KOG0302|consen 347 KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV---HQGQKEVKEVHWHRQIPGL 423 (440)
T ss_pred cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE---ecchhHhhhheeccCCCCe
Confidence 99999999999 456788889999999999863221 0 00001000 0123557788898877777
Q ss_pred EEEEeCCC
Q 005646 502 VMVSCADS 509 (686)
Q Consensus 502 l~~~s~D~ 509 (686)
+++++.||
T Consensus 424 lvsTa~dG 431 (440)
T KOG0302|consen 424 LVSTAIDG 431 (440)
T ss_pred EEEecccc
Confidence 77777665
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-21 Score=197.66 Aligned_cols=239 Identities=22% Similarity=0.349 Sum_probs=178.3
Q ss_pred EEEEEeeC---CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCc
Q 005646 254 LTMKFSPD---GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (686)
Q Consensus 254 ~~l~fspd---g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (686)
.+..|++. ...||.+.+||.|.++|.....
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~----------------------------------------------- 85 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIV----------------------------------------------- 85 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhh-----------------------------------------------
Confidence 34667652 4579999999999999976532
Q ss_pred eEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeE---eeCCCCeEEEEEeecC
Q 005646 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRV---FPHSNYVTCVHFNPVD 406 (686)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~---~~h~~~V~~v~fsp~~ 406 (686)
|++.+..+..+..|...|.++.|.|.. .|++++.|.++++||+.+.++... +.|...|.+++|.|.+
T Consensus 86 ---------fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n 156 (720)
T KOG0321|consen 86 ---------FRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTN 156 (720)
T ss_pred ---------cchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCC
Confidence 111122345567899999999999944 999999999999999999988766 4599999999999999
Q ss_pred CCEEEEEEcCCcEEEEecCCCcE----------------------------EEEeccCCcEEE---EEEccCCCEEEEEe
Q 005646 407 DNYFISGSIDGKVRIWAVLSCHV----------------------------VDWVDIRQIVTA---VCYRPDGQGGIVGS 455 (686)
Q Consensus 407 ~~~l~sgs~Dg~V~iwd~~~~~~----------------------------~~~~~~~~~V~~---v~~spdg~~l~~gs 455 (686)
...|++|+.||.|.|||++-..+ ..+..+...|.+ +.+..|...||+++
T Consensus 157 ~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSag 236 (720)
T KOG0321|consen 157 PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAG 236 (720)
T ss_pred CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeecc
Confidence 99999999999999999974320 011122233444 55556778888877
Q ss_pred c-CCcEEEEeCCCCeeeeeeeEEeeccccCC---CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc------------
Q 005646 456 M-MGDCRFYNVSDNHLELDAEICVHSKKKAP---CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------------ 519 (686)
Q Consensus 456 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~------------ 519 (686)
. |+.|+|||++.+......+.........| ...+++|.... .+.+|++.+.|+.|+.|++...
T Consensus 237 a~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~ 315 (720)
T KOG0321|consen 237 AADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL 315 (720)
T ss_pred CCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhhccCcc
Confidence 7 99999999998765443322222222222 23466676666 6788888889999999997642
Q ss_pred -------eeEcCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 005646 520 -------IGKYKDGKHIVSAGEDSNVYMWNCIGHEEP 549 (686)
Q Consensus 520 -------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~ 549 (686)
-..+||+.+|++|+.|..+++|.+...+.+
T Consensus 316 ~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 316 NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred cceeeeeeecCCCCceEeccCCCcceeeeeecCccCC
Confidence 235669999999999999999999987743
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=195.86 Aligned_cols=305 Identities=15% Similarity=0.169 Sum_probs=211.9
Q ss_pred eecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-----------CCEEEEEeCCCcEEEE
Q 005646 209 VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-----------GQYLASAGDDGVVRLW 277 (686)
Q Consensus 209 ~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-----------g~~Lasgs~Dg~I~vW 277 (686)
|.+..+.+.+...|..++|||++.-.+ .-+...+--|...||.+.--|- ...+.|++.|++||+|
T Consensus 332 Fdet~~klscVYndhSlYvWDvrD~~k----vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 332 FDETTDKLSCVYNDHSLYVWDVRDVNK----VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred ecCCCceEEEEEcCceEEEEecccccc----ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 444557888899999999999985443 2233445569999999987661 2358999999999999
Q ss_pred EeecCeeeeeec--cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCC
Q 005646 278 QVVEDERLTEVD--IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (686)
Q Consensus 278 d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 355 (686)
++..+..-..+. +...+...+. +.......+. .....+..+......+..-
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~-------------y~d~~~q~~~--------------d~~~~~fdka~~s~~d~r~ 460 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIP-------------YEDSTQQIMH--------------DASAGIFDKALVSTCDSRF 460 (1080)
T ss_pred ecccccccceeecccchhhhhcCc-------------cccCchhhhh--------------hccCCcccccchhhcCccc
Confidence 997643111111 0000000000 0000000000 0000111233333445566
Q ss_pred CeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeec--CCCEEEEEEcCCcEEEEecCCCcE-E
Q 005646 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV--DDNYFISGSIDGKVRIWAVLSCHV-V 430 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~--~~~~l~sgs~Dg~V~iwd~~~~~~-~ 430 (686)
.+.+++.+|++ +|++|..-|+++||++..-.....+. |...|.|+.|+.. ..++|++++.|.-|.|||+...-. +
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~ 540 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV 540 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchh
Confidence 89999999999 99999999999999999888777776 9999999999852 347899999999999999976543 3
Q ss_pred -EEeccCCcEEEEEEccCC--CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 431 -DWVDIRQIVTAVCYRPDG--QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 431 -~~~~~~~~V~~v~~spdg--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
.+-+|...|+++.|.-.| ..+++++.|..|.+--..... ...+-...........++.++..| ..+++++++.
T Consensus 541 qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~---~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQ 616 (1080)
T KOG1408|consen 541 QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS---SGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQ 616 (1080)
T ss_pred hhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc---CceeccccccccccceEEEeeeCC-CcceEEEEec
Confidence 566789999999999877 678888888877653322110 001111122223346799999999 8899999999
Q ss_pred CCcEEEEeCCcc------------------eeEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 005646 508 DSQVRILQGPNV------------------IGKYKDGKHIVSAGEDSNVYMWNCIGHEE 548 (686)
Q Consensus 508 D~~I~iwd~~~~------------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~ 548 (686)
|..||||+..+. +...|.|.||||...|.++.++|+-+++.
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc 675 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC 675 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh
Confidence 999999997643 44567899999999999999999999873
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-21 Score=205.12 Aligned_cols=236 Identities=21% Similarity=0.412 Sum_probs=198.5
Q ss_pred cceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCC
Q 005646 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDP 295 (686)
Q Consensus 216 l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~ 295 (686)
++.+...-.++||+.+ ++.+|...|.++..-..++.+++||.|..+-+|.+....
T Consensus 7 ~m~~~~~t~Lr~~~~~-------------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~------------ 61 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTR-------------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN------------ 61 (825)
T ss_pred cceeeeeeccccccch-------------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc------------
Confidence 3444555566777643 355699999999987789999999999999999875432
Q ss_pred cceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECC
Q 005646 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASID 374 (686)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~D 374 (686)
++..|.+|..+|.++.|++.. +|++|+.+
T Consensus 62 --------------------------------------------------~i~S~~~hespIeSl~f~~~E~Llaagsas 91 (825)
T KOG0267|consen 62 --------------------------------------------------AITSLTGHESPIESLTFDTSERLLAAGSAS 91 (825)
T ss_pred --------------------------------------------------hhheeeccCCcceeeecCcchhhhcccccC
Confidence 334578899999999999988 99999999
Q ss_pred CcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE-EEEeccCCcEEEEEEccCCCEEE
Q 005646 375 KTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-VDWVDIRQIVTAVCYRPDGQGGI 452 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~-~~~~~~~~~V~~v~~spdg~~l~ 452 (686)
|+|++||+..++.++++. |...+.+++|+| -+.++++|+.|+.+++||++..-+ ..+..|...|..+.|+|+|++++
T Consensus 92 gtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~ 170 (825)
T KOG0267|consen 92 GTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVA 170 (825)
T ss_pred CceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceee
Confidence 999999999999888887 999999999999 899999999999999999995444 45566888899999999999999
Q ss_pred EEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc--------------
Q 005646 453 VGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-------------- 518 (686)
Q Consensus 453 ~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-------------- 518 (686)
.|+.|..++|||+..+++.. ....|...+..+.|+| ..-++..|+.|+++++||+.+
T Consensus 171 ~g~ed~tvki~d~~agk~~~--------ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v 241 (825)
T KOG0267|consen 171 SGGEDNTVKIWDLTAGKLSK--------EFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGV 241 (825)
T ss_pred ccCCcceeeeeccccccccc--------ccccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeeccCCccCCc
Confidence 99999999999998887643 2456778899999999 778899999999999999874
Q ss_pred -ceeEcCCCCEEEEEeCCC
Q 005646 519 -VIGKYKDGKHIVSAGEDS 536 (686)
Q Consensus 519 -~~~~~~dg~~l~sgs~Dg 536 (686)
+..|.++++.+++|-.+.
T Consensus 242 ~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 242 RSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeeeecCCceeeecCchhh
Confidence 256778888888886553
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-21 Score=205.13 Aligned_cols=221 Identities=19% Similarity=0.382 Sum_probs=192.1
Q ss_pred ecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005646 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (686)
Q Consensus 210 s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~ 289 (686)
......+++|+.+..+-+|.+.+..... .|.+|..+|-++.|+++..+|++|+.+|+|++||+.+++
T Consensus 37 ~~s~r~~~~Gg~~~k~~L~~i~kp~~i~-------S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk------ 103 (825)
T KOG0267|consen 37 RKSSRSLVTGGEDEKVNLWAIGKPNAIT-------SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK------ 103 (825)
T ss_pred eccceeeccCCCceeeccccccCCchhh-------eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh------
Confidence 3456788999999999999887654432 378999999999999999999999999999999998764
Q ss_pred cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EE
Q 005646 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL 368 (686)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L 368 (686)
.++++.||...+..+.|+|-+ +.
T Consensus 104 --------------------------------------------------------~vrtLtgh~~~~~sv~f~P~~~~~ 127 (825)
T KOG0267|consen 104 --------------------------------------------------------IVRTLTGHLLNITSVDFHPYGEFF 127 (825)
T ss_pred --------------------------------------------------------hhhhhhccccCcceeeeccceEEe
Confidence 567788999999999999999 88
Q ss_pred EEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-EeccCCcEEEEEEcc
Q 005646 369 LSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRP 446 (686)
Q Consensus 369 ~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~sp 446 (686)
++++.|+.+++||++...|...+. |...|.++.|+| +|.++++|+.|.+++|||+..+++.. +..|.+.+.++.|+|
T Consensus 128 a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp 206 (825)
T KOG0267|consen 128 ASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP 206 (825)
T ss_pred ccccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccCc
Confidence 999999999999999999999998 999999999999 99999999999999999999999885 445899999999999
Q ss_pred CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCC
Q 005646 447 DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (686)
Q Consensus 447 dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~ 509 (686)
..-.++.|+.|+++++||+++...+-. .+.....|.++.|.| ++..+++|....
T Consensus 207 ~e~Lla~Gs~d~tv~f~dletfe~I~s--------~~~~~~~v~~~~fn~-~~~~~~~G~q~s 260 (825)
T KOG0267|consen 207 LEVLLAPGSSDRTVRFWDLETFEVISS--------GKPETDGVRSLAFNP-DGKIVLSGEQIS 260 (825)
T ss_pred hhhhhccCCCCceeeeeccceeEEeec--------cCCccCCceeeeecC-CceeeecCchhh
Confidence 999999999999999999986554321 223356799999999 777777776554
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-20 Score=183.79 Aligned_cols=273 Identities=16% Similarity=0.237 Sum_probs=199.8
Q ss_pred cceeeecCCC--ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeec
Q 005646 205 EGERVRLNEE--DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVE 281 (686)
Q Consensus 205 ~~~~~s~~~~--~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~ 281 (686)
-+..|.+..+ .+++|...|+|-+|+++.+.++....+ -+..|.++|.+|.|+| +...+++.+.||+||+-|++.
T Consensus 190 t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~---~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~ 266 (498)
T KOG4328|consen 190 TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY---LFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG 266 (498)
T ss_pred EEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE---EeccCCccccceEecCCChhheeeeccCceeeeeeecc
Confidence 3445555443 678899999999999975555444333 3567999999999999 566899999999999999987
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
+..- .+..+..-...+..+.
T Consensus 267 ~i~e------------------------------------------------------------~v~s~~~d~~~fs~~d 286 (498)
T KOG4328|consen 267 NISE------------------------------------------------------------EVLSLDTDNIWFSSLD 286 (498)
T ss_pred hhhH------------------------------------------------------------HHhhcCccceeeeecc
Confidence 5411 1111112334556777
Q ss_pred eeCCC-EEEEEECCCcEEEEECCCCee-eeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc-----EEEEe
Q 005646 362 WSKNN-YLLSASIDKTVRLWRVGNDHC-LRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-----VVDWV 433 (686)
Q Consensus 362 ~s~~~-~L~s~s~Dg~V~iWd~~~~~~-~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-----~~~~~ 433 (686)
|+.+. .++.+..=|...+||++++.. ...+. |...|++|+++|....+|+|++.|++++|||++.-. .+...
T Consensus 287 ~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~ 366 (498)
T KOG4328|consen 287 FSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL 366 (498)
T ss_pred ccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc
Confidence 77766 677777767999999998765 44444 888999999999999999999999999999998532 46788
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC--CeeeeeeeEEeeccccCCCCC--eEEEEEeCCCCCeEEEEeCCC
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD--NHLELDAEICVHSKKKAPCKR--ITGFQFLPQDSSKVMVSCADS 509 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~--I~~l~fsp~~~~~l~~~s~D~ 509 (686)
.|...|.++.|+|.|-.|++.+.|..|+|||..- .+......+ .| ...+... .....|.| +..+++++-.-.
T Consensus 367 ~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~H--n~~t~RwlT~fKA~W~P-~~~li~vg~~~r 442 (498)
T KOG4328|consen 367 PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PH--NNRTGRWLTPFKAAWDP-DYNLIVVGRYPR 442 (498)
T ss_pred cccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-ec--cCcccccccchhheeCC-CccEEEEeccCc
Confidence 8999999999999888899999999999999841 111111111 11 2222222 33457999 788999998888
Q ss_pred cEEEEeCCc-----------------ceeEcCCCCEEEE-EeCCCcEEEEeCC
Q 005646 510 QVRILQGPN-----------------VIGKYKDGKHIVS-AGEDSNVYMWNCI 544 (686)
Q Consensus 510 ~I~iwd~~~-----------------~~~~~~dg~~l~s-gs~Dg~V~iWd~~ 544 (686)
.|-|+|... ...++|-+..+++ ++.-|.|+||--+
T Consensus 443 ~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 443 PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 899998542 2457777774554 5567889998654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=187.98 Aligned_cols=265 Identities=17% Similarity=0.243 Sum_probs=190.7
Q ss_pred ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCC
Q 005646 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~ 294 (686)
.|+.+-.+|.|.+++.......+.. .......+|.+.|..++|-|....|++++.|.++++||+.+++...
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee-~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G-------- 136 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEE-RQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG-------- 136 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhh-hhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec--------
Confidence 5788899999999998765443211 1123467899999999999966689999999999999998876321
Q ss_pred CcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEE
Q 005646 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSAS 372 (686)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s 372 (686)
...+.||.+.|.+++|.|.+ .+++|+
T Consensus 137 ----------------------------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tGg 164 (720)
T KOG0321|consen 137 ----------------------------------------------------GRLNLGHTGSVKSECFMPTNPAVFCTGG 164 (720)
T ss_pred ----------------------------------------------------ceeecccccccchhhhccCCCcceeecc
Confidence 12456899999999999988 899999
Q ss_pred CCCcEEEEECCCCee--------------------eeEe--------eCCC----CeEEEEEeecCCCEEEEEEc-CCcE
Q 005646 373 IDKTVRLWRVGNDHC--------------------LRVF--------PHSN----YVTCVHFNPVDDNYFISGSI-DGKV 419 (686)
Q Consensus 373 ~Dg~V~iWd~~~~~~--------------------~~~~--------~h~~----~V~~v~fsp~~~~~l~sgs~-Dg~V 419 (686)
.||.|.|||++.... .+.+ .+.. .|+.+.| . |...||+++. |+.|
T Consensus 165 RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-k-De~tlaSaga~D~~i 242 (720)
T KOG0321|consen 165 RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-K-DESTLASAGAADSTI 242 (720)
T ss_pred CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-e-ccceeeeccCCCcce
Confidence 999999999964430 0000 1333 3555555 4 8899999888 9999
Q ss_pred EEEecCCCcEEE---------Eecc---CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCC
Q 005646 420 RIWAVLSCHVVD---------WVDI---RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (686)
Q Consensus 420 ~iwd~~~~~~~~---------~~~~---~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 487 (686)
++||+++..... +..+ .-.+++++....|.+|++.+.|+.|++|++.............+ ...
T Consensus 243 KVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~-----~~~ 317 (720)
T KOG0321|consen 243 KVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGK-----LNS 317 (720)
T ss_pred EEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCc-----ccc
Confidence 999999765331 1112 23578888888899999999999999999986543322111100 001
Q ss_pred CeE-EEEEeCCCCCeEEEEeCCCcEEEEeCCc----------------ceeEcC-CCCEEEEEeCCCcEEEEeCCCCCC
Q 005646 488 RIT-GFQFLPQDSSKVMVSCADSQVRILQGPN----------------VIGKYK-DGKHIVSAGEDSNVYMWNCIGHEE 548 (686)
Q Consensus 488 ~I~-~l~fsp~~~~~l~~~s~D~~I~iwd~~~----------------~~~~~~-dg~~l~sgs~Dg~V~iWd~~~~~~ 548 (686)
.++ .-..+| ++..+++|+.|....+|.+.+ .++|.| .-.-++|+++|..++||++.++-+
T Consensus 318 sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 318 SFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred eeeeeeecCC-CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence 111 223566 889999999999999998643 355655 233455669999999999977653
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-17 Score=175.35 Aligned_cols=302 Identities=15% Similarity=0.239 Sum_probs=216.7
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceeccc-CCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAH-DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
.+++...+.||.+-.+|.|.||+... ..+...++.+| ...|-+++|++ +..|++.+.+|.|.-||+.+++.+
T Consensus 31 lA~s~kS~~lAvsRt~g~IEiwN~~~------~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 31 LAYSHKSNQLAVSRTDGNIEIWNLSN------NWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred EEEeccCCceeeeccCCcEEEEccCC------CceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCcee
Confidence 45566677899999999999998765 33444566666 45899999995 557889999999999999999998
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
..+......+..+...+.. ..+..+.+.. .+..+..+. +.. ..-..|.-..+.|.+++|+|+
T Consensus 104 ~~~d~~gg~IWsiai~p~~----~~l~IgcddG-vl~~~s~~p---------~~I----~~~r~l~rq~sRvLslsw~~~ 165 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPEN----TILAIGCDDG-VLYDFSIGP---------DKI----TYKRSLMRQKSRVLSLSWNPT 165 (691)
T ss_pred EEecCCCcceeEEEeCCcc----ceEEeecCCc-eEEEEecCC---------ceE----EEEeecccccceEEEEEecCC
Confidence 8887766665555444332 2222221111 111111111 100 011233345789999999999
Q ss_pred C-EEEEEECCCcEEEEECCCCeeeeEee---------CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEec
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHCLRVFP---------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVD 434 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---------h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~ 434 (686)
+ .|++|+.||.|++||+..++.+.... ...-|+++.|-. ...|++|..-|+|.+||...+.++ ....
T Consensus 166 ~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTLiqS~~~ 243 (691)
T KOG2048|consen 166 GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTLIQSHSC 243 (691)
T ss_pred ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCcchhhhhhh
Confidence 9 79999999999999999998776221 234588888874 678999999999999999999887 4556
Q ss_pred cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iw 514 (686)
|...|.+++..+++.++++++.|+.|..|...+++-. .........|...|.+++..+ ..+++|+.|..+.+-
T Consensus 244 h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~----wv~~~~r~~h~hdvrs~av~~---~~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 244 HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE----WVINSRRDLHAHDVRSMAVIE---NALISGGRDFTLAIC 316 (691)
T ss_pred hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc----eeeeccccCCcccceeeeeec---ceEEecceeeEEEEc
Confidence 8889999999999999999999999999998876542 233344567788899999988 389999999988876
Q ss_pred eCCc-------ceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 515 QGPN-------VIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 515 d~~~-------~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
-... ....+|.+..+.++.++..+.+|.
T Consensus 317 ~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~ 351 (691)
T KOG2048|consen 317 SSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWK 351 (691)
T ss_pred cccccCchhhhccccccccceeecCccceEEEEec
Confidence 4332 223344555555555555444453
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-19 Score=170.68 Aligned_cols=271 Identities=17% Similarity=0.220 Sum_probs=195.5
Q ss_pred CcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 204 GEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 204 ~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
.+++.|++.|.++|.|..+|+|.|||..+.. ..+.|.+|..+|++++||+||+.|+|++.|..|.+||+..|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-------hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence 5778999999999999999999999877654 356788999999999999999999999999999999999887
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
+++.+. ...+|+...|+
T Consensus 99 ~l~rir---------------------------------------------------------------f~spv~~~q~h 115 (405)
T KOG1273|consen 99 PLKRIR---------------------------------------------------------------FDSPVWGAQWH 115 (405)
T ss_pred ceeEEE---------------------------------------------------------------ccCccceeeec
Confidence 555443 34678888888
Q ss_pred CCC--EEEEEECCCcEEEEECCCCe--eeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccC
Q 005646 364 KNN--YLLSASIDKTVRLWRVGNDH--CLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR 436 (686)
Q Consensus 364 ~~~--~L~s~s~Dg~V~iWd~~~~~--~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~ 436 (686)
|.. ..+..-++..-.+-++...+ ++..-. .+..-.+..|.+ .++++++|...|.+.++|..+.+++......
T Consensus 116 p~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~rit 194 (405)
T KOG1273|consen 116 PRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVASFRIT 194 (405)
T ss_pred cccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecchheeeeeeeec
Confidence 865 45555555555555555422 111111 112223346788 8999999999999999999999998665543
Q ss_pred --CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee-eeeeEEeeccc--cCCCCCeEEEEEeCCCCCeEEEEeC-CCc
Q 005646 437 --QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE-LDAEICVHSKK--KAPCKRITGFQFLPQDSSKVMVSCA-DSQ 510 (686)
Q Consensus 437 --~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~-~~~~~~~~~~~--~~~~~~I~~l~fsp~~~~~l~~~s~-D~~ 510 (686)
..|..+-++..|+.|++-+.|..||.|+++.-.-. ...+.....+. .-....-.++.|+. ++.+++.+++ -..
T Consensus 195 s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeYv~a~s~~aHa 273 (405)
T KOG1273|consen 195 SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEYVCAGSARAHA 273 (405)
T ss_pred hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccEEEecccccee
Confidence 57889999999999999999999999998631111 00000000000 00112345678888 7777777664 466
Q ss_pred EEEEeCCc----------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 511 VRILQGPN----------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 511 I~iwd~~~----------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++||.... -+.|+|-...|++- ..|.|+||.....+
T Consensus 274 LYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 274 LYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred EEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence 88887432 14577777788887 78899999987654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-19 Score=168.45 Aligned_cols=191 Identities=16% Similarity=0.210 Sum_probs=145.6
Q ss_pred eEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCC-----eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEE
Q 005646 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND-----HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVR 420 (686)
Q Consensus 347 ~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~-----~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~ 420 (686)
+..+++|.+.|++++|+.+| +|++++.|++|+||+++.. ++++.--..+..+.+.|.|....+++++....+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 35678999999999999999 9999999999999999753 23332223456789999995555666666777899
Q ss_pred EEecCCCc-------EEEE------eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCC
Q 005646 421 IWAVLSCH-------VVDW------VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (686)
Q Consensus 421 iwd~~~~~-------~~~~------~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 487 (686)
+|.+...+ .+.+ ..|.-.+..+-....+++|++++.|..|.+|++.. ++... ......
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-q~L~~--------idtnq~ 229 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-QLLQS--------IDTNQS 229 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC-ceeee--------eccccc
Confidence 99875322 1111 12445677777778899999999999999999984 33221 111223
Q ss_pred CeEEEEEeCCCCCeEEEEeCCCcEEEEeCC-----------------------cceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 488 RITGFQFLPQDSSKVMVSCADSQVRILQGP-----------------------NVIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 488 ~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~-----------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
.-+..+.+| ++.++++++---.|++|+.. ...+|+++...++|.|.||+++|||.+
T Consensus 230 ~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 230 SNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred cccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 356678999 89999999999999999742 347899999999999999999999987
Q ss_pred CCC
Q 005646 545 GHE 547 (686)
Q Consensus 545 ~~~ 547 (686)
-..
T Consensus 309 VrY 311 (420)
T KOG2096|consen 309 VRY 311 (420)
T ss_pred ceE
Confidence 643
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-17 Score=173.92 Aligned_cols=235 Identities=15% Similarity=0.250 Sum_probs=193.3
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
-..+|++|+|+...+.||.+=.||.|-||++..+=.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~-------------------------------------------- 59 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF-------------------------------------------- 59 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCce--------------------------------------------
Confidence 346899999999999999999999999999976321
Q ss_pred CceEEEeCCccccccCCCeEEec-cCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecC
Q 005646 329 ESACVVFPPKVFRILEKPLHEFH-GHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVD 406 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~ 406 (686)
....+. +....|.+|+|++.+.|++.+.+|.|.-||+.+.+.+..+. ..+.|++++.+| .
T Consensus 60 -----------------~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~ 121 (691)
T KOG2048|consen 60 -----------------LEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-E 121 (691)
T ss_pred -----------------eeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-c
Confidence 112222 34568999999988899999999999999999999999888 789999999999 8
Q ss_pred CCEEEEEEcCCcEEEEecCCCcEEEE---eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecccc
Q 005646 407 DNYFISGSIDGKVRIWAVLSCHVVDW---VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (686)
Q Consensus 407 ~~~l~sgs~Dg~V~iwd~~~~~~~~~---~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 483 (686)
+..++.|+.||.+..+++..+.+... ...++.|.+++|+|++..++.|+.||.|++||...+.......+.+....+
T Consensus 122 ~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k 201 (691)
T KOG2048|consen 122 NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSK 201 (691)
T ss_pred cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccccc
Confidence 89999999999888888888776532 234578999999999999999999999999999887765533333333334
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
....-|.++.|.. ...+++|..-|.|.+||... +++..+++.++++++.|+.|.-+...+.+
T Consensus 202 ~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 202 REPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred CCceEEEEEEEee--cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCc
Confidence 3455688899885 47899999999999999753 35667789999999999999999988764
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=188.33 Aligned_cols=257 Identities=16% Similarity=0.226 Sum_probs=202.3
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
.++.++|+.+++++.|+.|++|+......+ ...+.-|...|.+++.. +.+|++|+.+++|.+|.+.+++.-
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~------P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~- 89 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEE------PETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEED- 89 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccC------CchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCcc-
Confidence 466778889999999999999986544221 12233377788888764 559999999999999999876521
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~ 366 (686)
..+...+-++.+++++.+|
T Consensus 90 -------------------------------------------------------------~iL~Rftlp~r~~~v~g~g 108 (933)
T KOG1274|consen 90 -------------------------------------------------------------TILARFTLPIRDLAVSGSG 108 (933)
T ss_pred -------------------------------------------------------------ceeeeeeccceEEEEecCC
Confidence 1112244688999999999
Q ss_pred -EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec---------c
Q 005646 367 -YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---------I 435 (686)
Q Consensus 367 -~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~---------~ 435 (686)
+++.||.|-.|++-++......+++. |.++|.++.|+| .+++||+.+.||+|++||+.++.+..+.. .
T Consensus 109 ~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~ 187 (933)
T KOG1274|consen 109 KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFIL 187 (933)
T ss_pred cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccc
Confidence 99999999999999999888888877 999999999999 99999999999999999999887653321 1
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
...++.++|+|+|..+++-..|+.|.+|+..+...+.... . +.+...+..++|+| .+++|++++.||.|-|||
T Consensus 188 s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr----~--~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 188 SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR----D--KLSSSKFSDLQWSP-NGKYIAASTLDGQILVWN 260 (933)
T ss_pred cceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec----c--cccccceEEEEEcC-CCcEEeeeccCCcEEEEe
Confidence 3457889999998888888899999999998877654322 2 22334499999999 799999999999999999
Q ss_pred CC-----------cceeEcCCCCEEEEEeCCCcEEEE
Q 005646 516 GP-----------NVIGKYKDGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 516 ~~-----------~~~~~~~dg~~l~sgs~Dg~V~iW 541 (686)
.. .+++|.|++..|-.-..-|...+|
T Consensus 261 v~t~~~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 261 VDTHERHEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cccchhccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 76 356777877666555555555444
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.7e-20 Score=184.97 Aligned_cols=232 Identities=12% Similarity=0.211 Sum_probs=201.0
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
+.+.+++..|++|+...++.|||+......+. .++..-.-...+++.+||.+..+++..||.|.|||+.+..
T Consensus 471 ckL~pdgrtLivGGeastlsiWDLAapTprik-----aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~--- 542 (705)
T KOG0639|consen 471 CKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK-----AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT--- 542 (705)
T ss_pred eEecCCCceEEeccccceeeeeeccCCCcchh-----hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce---
Confidence 45678999999999999999999876554332 2343344567889999999999999999999999997643
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~ 366 (686)
.++.|+||.+.+.||..+++|
T Consensus 543 -----------------------------------------------------------~VrqfqGhtDGascIdis~dG 563 (705)
T KOG0639|consen 543 -----------------------------------------------------------LVRQFQGHTDGASCIDISKDG 563 (705)
T ss_pred -----------------------------------------------------------eeecccCCCCCceeEEecCCC
Confidence 567889999999999999999
Q ss_pred -EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEc
Q 005646 367 -YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYR 445 (686)
Q Consensus 367 -~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~s 445 (686)
.|.||+-|.+||-||+++++.+........|.++-.+| ++.+++.|-.++.|.|-.....+...+..|...|.++.|.
T Consensus 564 tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa 642 (705)
T KOG0639|consen 564 TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFA 642 (705)
T ss_pred ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCC-CccceeeecccCcEEEEecCCccceeecccccEEEEEEec
Confidence 99999999999999999999988888889999999999 9999999999999999988888877888899999999999
Q ss_pred cCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 446 PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 446 pdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
+.|+++++.+.|+-+..|.+.-+.-++.. .....|.+...+. +.+++++|+.|..-.||.+
T Consensus 643 ~cGkwfvStGkDnlLnawrtPyGasiFqs---------kE~SsVlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 643 YCGKWFVSTGKDNLLNAWRTPYGASIFQS---------KESSSVLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCceeeecCchhhhhhccCccccceeec---------cccCcceeeeecc-CceEEEecCCCcceEEEEE
Confidence 99999999999999999998776644321 1236699999998 7799999999998888864
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.6e-19 Score=172.64 Aligned_cols=169 Identities=23% Similarity=0.372 Sum_probs=143.3
Q ss_pred eecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 245 EIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 245 ~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
.+.||+++|..++|+| +.+.|||||+|.+|.||++-.+.....+.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---------------------------------- 121 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---------------------------------- 121 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc----------------------------------
Confidence 4679999999999999 67789999999999999997765332221
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~ 401 (686)
.|+..|.||...|--++|+|.- .|++++.|.+|.+||+.++..+.++.|.+.|+++.
T Consensus 122 ---------------------epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~s 180 (472)
T KOG0303|consen 122 ---------------------EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMS 180 (472)
T ss_pred ---------------------cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEE
Confidence 5788999999999999999976 99999999999999999999999999999999999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCcEEEEe-ccCC-cEEEEEEccCCCEEEEEe---cCCcEEEEeCCCCe
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIRQ-IVTAVCYRPDGQGGIVGS---MMGDCRFYNVSDNH 469 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~~~-~V~~v~~spdg~~l~~gs---~dg~i~iwd~~~~~ 469 (686)
|+- ++.+|++.+.|.+|||||.++++++... .|.+ ....+.|-.+|..+-+|- .+..+-+||..+-.
T Consensus 181 fn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 181 FNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLE 252 (472)
T ss_pred ecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCccccc
Confidence 999 9999999999999999999999998544 4443 345667888898555553 36779999976543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-19 Score=180.38 Aligned_cols=208 Identities=18% Similarity=0.272 Sum_probs=176.3
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
-++++|+..+.|+|||++.. ...+.+++|+..|+++.++....|||+++..|.|.|..+.++.....+..
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~k-------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~--- 161 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAK-------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI--- 161 (673)
T ss_pred eeeeccCcCceeeehhhHHH-------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec---
Confidence 67889999999999987632 22456889999999999999999999999999999999988764333321
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSA 371 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~ 371 (686)
+....|.-|.|++.. +|.++
T Consensus 162 ----------------------------------------------------------~sgqsvRll~ys~skr~lL~~a 183 (673)
T KOG4378|consen 162 ----------------------------------------------------------DSGQSVRLLRYSPSKRFLLSIA 183 (673)
T ss_pred ----------------------------------------------------------CCCCeEEEeecccccceeeEee
Confidence 123345688999987 88899
Q ss_pred ECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCC
Q 005646 372 SIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ 449 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~ 449 (686)
+.+|.|.+||+....++..+. |..+...|+|+|.+..+|++.+.|.+|.+||++..+.........+.++++|.++|.
T Consensus 184 sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~ 263 (673)
T KOG4378|consen 184 SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGT 263 (673)
T ss_pred ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCce
Confidence 999999999999888887776 999999999999999999999999999999999988888888889999999999999
Q ss_pred EEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 450 GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 450 ~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
+|++|+..|.|..||++..+.... ...+|...|++++|-|
T Consensus 264 ~L~aG~s~G~~i~YD~R~~k~Pv~-------v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 264 YLCAGNSKGELIAYDMRSTKAPVA-------VRSAHDASVTRVAFQP 303 (673)
T ss_pred EEEeecCCceEEEEecccCCCCce-------EeeecccceeEEEeee
Confidence 999999999999999987654321 1344667799999988
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=173.88 Aligned_cols=245 Identities=16% Similarity=0.244 Sum_probs=191.2
Q ss_pred ccccCceecccCCceEEEEEeeCC--CEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccc
Q 005646 239 ALYKGQEIQAHDGSILTMKFSPDG--QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKE 316 (686)
Q Consensus 239 ~~~~~~~l~~H~~~I~~l~fspdg--~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (686)
.....+.++-|.+.|++++|+|.. +++|+|..-|.|-+||+.+.+..
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d------------------------------- 223 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD------------------------------- 223 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc-------------------------------
Confidence 344456777899999999999953 58999999999999999632210
Q ss_pred cceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee--
Q 005646 317 KISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-- 392 (686)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-- 392 (686)
..-+..+..|.++|.+|.|+|.+ .+++.|+||+|++-|++....-..+.
T Consensus 224 ---------------------------~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~ 276 (498)
T KOG4328|consen 224 ---------------------------KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD 276 (498)
T ss_pred ---------------------------cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcC
Confidence 01345567899999999999988 99999999999999999876544444
Q ss_pred -CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE--EEEeccCCcEEEEEEccC-CCEEEEEecCCcEEEEeCCCC
Q 005646 393 -HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 393 -h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~--~~~~~~~~~V~~v~~spd-g~~l~~gs~dg~i~iwd~~~~ 468 (686)
....+..++|+. ....++.+..=|...+||+++... -.+.-|...|+.++++|. ..+||+++.|++.+|||++.-
T Consensus 277 ~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l 355 (498)
T KOG4328|consen 277 TDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQL 355 (498)
T ss_pred ccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhh
Confidence 345677888888 666666676667999999998754 345567779999999994 567899999999999999754
Q ss_pred eeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC----c--------------------ceeEcC
Q 005646 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP----N--------------------VIGKYK 524 (686)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~----~--------------------~~~~~~ 524 (686)
...... .-....|...|.+..|+|.++. |++++.|..|||||.. . -..|.|
T Consensus 356 ~~K~sp----~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P 430 (498)
T KOG4328|consen 356 RGKASP----FLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDP 430 (498)
T ss_pred cCCCCc----ceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCC
Confidence 332221 1123457788999999996665 9999999999999973 0 035777
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCC
Q 005646 525 DGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 525 dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+..+|++|-.-..|-|+|-+.++
T Consensus 431 ~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 431 DYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred CccEEEEeccCcceeEEcCCCCE
Confidence 99999999999999999988776
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-17 Score=171.75 Aligned_cols=181 Identities=17% Similarity=0.175 Sum_probs=136.4
Q ss_pred CeeEEEeeCCC-EE-EEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEE-EEcCCcEEEEecCCCcEEEE
Q 005646 356 EILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFIS-GSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 356 ~V~~l~~s~~~-~L-~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~s-gs~Dg~V~iwd~~~~~~~~~ 432 (686)
.+..++|+|++ .+ ++++.++.|++||+.+++.+..+.....+..++|+| +++.+++ ++.|+.|++||+.+.+.+..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHP-NGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 35679999998 55 567789999999999998887776444567899999 7776654 55689999999999887766
Q ss_pred eccCCcEEEEEEccCCCEEEEEecCC-cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE-eCCCc
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGSMMG-DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CADSQ 510 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~-s~D~~ 510 (686)
......+.+++|+|+|++++++..++ .+.+||..+.+...... ....+..++|+| ++..++++ ..++.
T Consensus 111 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~---------~~~~~~~~~~s~-dg~~l~~~~~~~~~ 180 (300)
T TIGR03866 111 IPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL---------VDQRPRFAEFTA-DGKELWVSSEIGGT 180 (300)
T ss_pred eeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE---------cCCCccEEEECC-CCCEEEEEcCCCCE
Confidence 66556678999999999999988765 46778987765432110 112357799999 66666554 46999
Q ss_pred EEEEeCCcc----------------------eeEcCCCCEEEE-EeCCCcEEEEeCCCCC
Q 005646 511 VRILQGPNV----------------------IGKYKDGKHIVS-AGEDSNVYMWNCIGHE 547 (686)
Q Consensus 511 I~iwd~~~~----------------------~~~~~dg~~l~s-gs~Dg~V~iWd~~~~~ 547 (686)
|++||..+. +.++|++++++. .+.++.|.+||+.+++
T Consensus 181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE 240 (300)
T ss_pred EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 999996531 446789998655 4556789999998765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=175.43 Aligned_cols=280 Identities=16% Similarity=0.215 Sum_probs=204.9
Q ss_pred cceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCC-EEEEEeCCCcEEEEEeecCeeeeeeccCCCC
Q 005646 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (686)
Q Consensus 216 l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~ 294 (686)
+..++....+++||....... ..+..++ -.-.|.+++|+.... .+|+.+.|..|++|.-.. + ..++.
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~--~~~~~~t---~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g-~-~~~Vp----- 72 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETK--SEYVHQT---AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDG-K-TPEVP----- 72 (673)
T ss_pred eeeeccCCceEEeecccccCc--cccccCC---CCCcceeeeccccceEEEeecCCceeEEEecccC-C-CCccc-----
Confidence 455677778999987653321 1111111 122489999987653 244456788999997432 2 11100
Q ss_pred CcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC
Q 005646 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI 373 (686)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~ 373 (686)
.+....+. .-.|++..... ++++|+.
T Consensus 73 ---------------------------------------------------~~~k~~gd--~~~Cv~~~s~S~y~~sgG~ 99 (673)
T KOG4378|consen 73 ---------------------------------------------------RVRKLTGD--NAFCVACASQSLYEISGGQ 99 (673)
T ss_pred ---------------------------------------------------eeeccccc--hHHHHhhhhcceeeeccCc
Confidence 11122222 33455554555 9999999
Q ss_pred CCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccC--CcEEEEEEccCCCE
Q 005646 374 DKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR--QIVTAVCYRPDGQG 450 (686)
Q Consensus 374 Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~--~~V~~v~~spdg~~ 450 (686)
.++|+|||++...+.+.+. |...|+++.++- .+.||++++..|.|.|..+.++.....+.+. ..|.-+.|+|..+.
T Consensus 100 ~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~ 178 (673)
T KOG4378|consen 100 SGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF 178 (673)
T ss_pred CceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccce
Confidence 9999999999877887777 999999999998 8999999999999999999998877655554 44668999997765
Q ss_pred -EEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC------------
Q 005646 451 -GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP------------ 517 (686)
Q Consensus 451 -l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~------------ 517 (686)
|.+++.+|.|.+||+....... .....|..+..+++|+|.+..++++.+.|..|.+||..
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~~-------~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~ 251 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPIF-------HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH 251 (673)
T ss_pred eeEeeccCCeEEEEeccCCCccc-------chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC
Confidence 5568899999999998765432 23567888999999999999999999999999999964
Q ss_pred --cceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccC-CcEEEecCCC
Q 005646 518 --NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTT-NASIAIPWCG 575 (686)
Q Consensus 518 --~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~s~~g 575 (686)
+.++|.++|.+|+.|+..|.|+.||+...+ .++.....|.. ...++|-...
T Consensus 252 Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k-------~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 252 PLSTVAFSECGTYLCAGNSKGELIAYDMRSTK-------APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CcceeeecCCceEEEeecCCceEEEEecccCC-------CCceEeeecccceeEEEeeecc
Confidence 347899999999999999999999998765 34444544544 4455554443
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=167.04 Aligned_cols=265 Identities=18% Similarity=0.283 Sum_probs=188.8
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee--CCCEEEEEeCCCcEEEEEeecCeeeeeeccC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
..+|++-..|.|++|+...... .+++++|...+..++|.. .+..+.+|+.||+||+||++.......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~-------l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~---- 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL-------LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR---- 109 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh-------hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh----
Confidence 4578899999999998765322 467899999999999987 467899999999999999987663322
Q ss_pred CCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC-CCeeEEEeeCCC-EEE
Q 005646 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS-GEILDLSWSKNN-YLL 369 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~s~~~-~L~ 369 (686)
..+.+|. .+-.+++.+..+ .++
T Consensus 110 --------------------------------------------------------~~~~~~~~~~f~~ld~nck~~ii~ 133 (376)
T KOG1188|consen 110 --------------------------------------------------------ISWTQQSGTPFICLDLNCKKNIIA 133 (376)
T ss_pred --------------------------------------------------------eeccCCCCCcceEeeccCcCCeEE
Confidence 2233343 345566655444 555
Q ss_pred EEE----CCCcEEEEECCCCee-eeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc----EEEEeccCCc
Q 005646 370 SAS----IDKTVRLWRVGNDHC-LRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH----VVDWVDIRQI 438 (686)
Q Consensus 370 s~s----~Dg~V~iWd~~~~~~-~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~----~~~~~~~~~~ 438 (686)
+|. .|-.|.+||++..+. +..+. |.+.||++.|+|.+.++|+|||.||.|.|||+.... ++..+.+...
T Consensus 134 ~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sS 213 (376)
T KOG1188|consen 134 CGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSS 213 (376)
T ss_pred eccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccce
Confidence 554 367899999998776 77766 999999999999999999999999999999997642 4567778888
Q ss_pred EEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeeeEEeec----cccCCCCCeEEEEEeCCCCCeEEEEeC-CCcEE
Q 005646 439 VTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHS----KKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVR 512 (686)
Q Consensus 439 V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~I~~l~fsp~~~~~l~~~s~-D~~I~ 512 (686)
|..+.|..++ +.|.+-+..++..+|++..+......+..... ........+.. ..+|.+....++++. -+...
T Consensus 214 I~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~ 292 (376)
T KOG1188|consen 214 IHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGT 292 (376)
T ss_pred eeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-cccCCCcceEEEeccccCcee
Confidence 9999999887 45778889999999999887754322211000 00011111111 234656666666655 45555
Q ss_pred EEeCCc--------c--------------eeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 513 ILQGPN--------V--------------IGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 513 iwd~~~--------~--------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
++-... . +.|...+..+.|||+||.+.+|...+.
T Consensus 293 ~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 293 IFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDA 348 (376)
T ss_pred EEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCCc
Confidence 553221 1 223347889999999999999997543
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-18 Score=169.36 Aligned_cols=287 Identities=21% Similarity=0.327 Sum_probs=199.0
Q ss_pred eeeecCCC-ccceeeccceEEEEEcCCccccc--cccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 207 ERVRLNEE-DAMFCSKVQRVKVYHCKKRSKEL--SALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 207 ~~~s~~~~-~l~~g~~d~~v~vw~~~~~~~~~--~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
..|..+.. .+++|+.|..|++|.+......- ..+.-...|..|...|+++.|+|+|++||||+.+|.|.+|....-.
T Consensus 19 ~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~ 98 (434)
T KOG1009|consen 19 VDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVR 98 (434)
T ss_pred EEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcC
Confidence 34444544 88999999999999986644332 2333345688899999999999999999999999999999865411
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
+. .... + ....+ .. -.....+.+|..+|.+++|+
T Consensus 99 -~~-----~~d~-e-------------~~~~k----------------------e~----w~v~k~lr~h~~diydL~Ws 132 (434)
T KOG1009|consen 99 -IF-----DADT-E-------------ADLNK----------------------EK----WVVKKVLRGHRDDIYDLAWS 132 (434)
T ss_pred -Cc-----cccc-h-------------hhhCc----------------------cc----eEEEEEecccccchhhhhcc
Confidence 00 0000 0 00000 00 01235667899999999999
Q ss_pred CCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec-------
Q 005646 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD------- 434 (686)
Q Consensus 364 ~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~------- 434 (686)
|++ ++++++.|.++++||+..|+.+..+. |..+|..++|.| -.+++++-+.|...+.+++...+.+....
T Consensus 133 ~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~ 211 (434)
T KOG1009|consen 133 PDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAK 211 (434)
T ss_pred CCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence 999 99999999999999999999999888 999999999999 89999999999988888876554332111
Q ss_pred -------------c----CCcEEEEEEccCCCEEEEEec----CC-----cEEEEeCCCCeeeeeeeEEeeccccCCCCC
Q 005646 435 -------------I----RQIVTAVCYRPDGQGGIVGSM----MG-----DCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (686)
Q Consensus 435 -------------~----~~~V~~v~~spdg~~l~~gs~----dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 488 (686)
| +.-...++|+|||..+++... .+ ..++|+-..-+. .... ......+
T Consensus 212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r---P~~~----lp~~~k~ 284 (434)
T KOG1009|consen 212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR---PAAR----LPSPKKP 284 (434)
T ss_pred ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccC---ceee----cCCCCcc
Confidence 1 111456899999999987532 22 234554321111 1111 1122344
Q ss_pred eEEEEEeCC-------C---------CCeEEEEeCCCcEEEEeCCc----------------ceeEcCCCCEEEEEeCCC
Q 005646 489 ITGFQFLPQ-------D---------SSKVMVSCADSQVRILQGPN----------------VIGKYKDGKHIVSAGEDS 536 (686)
Q Consensus 489 I~~l~fsp~-------~---------~~~l~~~s~D~~I~iwd~~~----------------~~~~~~dg~~l~sgs~Dg 536 (686)
...+.|+|- . -.++++...-+.|.|||..+ -++|++||.+|+..|.||
T Consensus 285 ~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 285 ALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDG 364 (434)
T ss_pred eEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCC
Confidence 445555441 1 12344445567899998754 478999999999999999
Q ss_pred cEEEEeCCCCC
Q 005646 537 NVYMWNCIGHE 547 (686)
Q Consensus 537 ~V~iWd~~~~~ 547 (686)
..-+-.++..+
T Consensus 365 yCS~vtfe~~e 375 (434)
T KOG1009|consen 365 FCSLVTFEPWE 375 (434)
T ss_pred ceEEEEEcchh
Confidence 98888887765
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6e-18 Score=175.08 Aligned_cols=134 Identities=20% Similarity=0.297 Sum_probs=104.9
Q ss_pred cCCcEEEEecCCC-c----EEEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCC
Q 005646 415 IDGKVRIWAVLSC-H----VVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (686)
Q Consensus 415 ~Dg~V~iwd~~~~-~----~~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 488 (686)
.-|.|-||+++.. + ++........|+.+.|.| |.+.||+++.||.|++|.+..+.+... ..........|..+
T Consensus 601 ~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~-~~tPe~~lt~h~eK 679 (1012)
T KOG1445|consen 601 SGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN-EMTPEKILTIHGEK 679 (1012)
T ss_pred CCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc-cCCcceeeecccce
Confidence 3567777777542 2 122223456699999999 888999999999999999987654321 12233345668889
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 005646 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHEEP 549 (686)
Q Consensus 489 I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~ 549 (686)
|+.+.|+|-....|++++.|.+|++||+.+ .++|+|||+.+||.+.||+|+||+...++.+
T Consensus 680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 999999998888999999999999999764 2789999999999999999999999887744
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.7e-19 Score=168.65 Aligned_cols=228 Identities=21% Similarity=0.365 Sum_probs=166.3
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPE 292 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~ 292 (686)
-++|.|+.-|.|+|.|+.+... ...+.+|...|+.|+|.|+ .++|++|+.|..||+|++++..++..+.
T Consensus 106 p~la~~G~~GvIrVid~~~~~~-------~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG--- 175 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQC-------SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG--- 175 (385)
T ss_pred eeEEeecceeEEEEEecchhhh-------ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec---
Confidence 3788889999999998765433 3557889999999999996 5799999999999999999987654442
Q ss_pred CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEE
Q 005646 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA 371 (686)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~ 371 (686)
-+.||.+.|+++.|++++ +|+++
T Consensus 176 --------------------------------------------------------G~egHrdeVLSvD~~~~gd~i~Sc 199 (385)
T KOG1034|consen 176 --------------------------------------------------------GVEGHRDEVLSVDFSLDGDRIASC 199 (385)
T ss_pred --------------------------------------------------------ccccccCcEEEEEEcCCCCeeecc
Confidence 235799999999999999 99999
Q ss_pred ECCCcEEEEECCCCe-------------------------eeeEe----eCCCCeEEEEEeecCCCEEEEEEcCCcEEEE
Q 005646 372 SIDKTVRLWRVGNDH-------------------------CLRVF----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~-------------------------~~~~~----~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iw 422 (686)
++|.++++|++...+ .+..| .|..+|-|+.|- ++++++-+-++.|..|
T Consensus 200 GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w 276 (385)
T KOG1034|consen 200 GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCW 276 (385)
T ss_pred CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEE
Confidence 999999999997321 11112 188899999984 6899999999999999
Q ss_pred ecC-CCc-------------EEEEecc-CCcEE--EEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCC
Q 005646 423 AVL-SCH-------------VVDWVDI-RQIVT--AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (686)
Q Consensus 423 d~~-~~~-------------~~~~~~~-~~~V~--~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 485 (686)
..- -.+ ++..+.. ...|. ..+|.|-+++||.|...|.|++||++.........+. ....
T Consensus 277 ~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~----~s~~ 352 (385)
T KOG1034|consen 277 KPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT----HSKS 352 (385)
T ss_pred ecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE----eccc
Confidence 761 111 1111121 12233 3566788899999999999999999987664322221 1123
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
...|...+|+. ++..|+..+.|+.|--||
T Consensus 353 ~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 353 GSTVRQTSFSR-DGSILVLVCDDGTVWRWD 381 (385)
T ss_pred cceeeeeeecc-cCcEEEEEeCCCcEEEEE
Confidence 46688888888 444444444444444444
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=161.06 Aligned_cols=262 Identities=23% Similarity=0.351 Sum_probs=190.0
Q ss_pred ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC----CCEEEEEeCCCcEEEEEeecCeeeeeecc
Q 005646 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD----GQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
.+++....+++.+|.+..... ...+... .=..|...-..++|+-+ ..+||.||.-|.|+|.|+.+++
T Consensus 56 ~vfatvG~~rvtiy~c~~d~~-ir~lq~y-~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~------- 126 (385)
T KOG1034|consen 56 QVFATVGGNRVTIYECPGDGG-IRLLQSY-ADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ------- 126 (385)
T ss_pred ceEEEeCCcEEEEEEECCccc-eeeeeec-cCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh-------
Confidence 344444556788887755431 1111110 01248888999999875 3489999999999999998876
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EE
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YL 368 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L 368 (686)
....+.+|...|+.|.++|.. +|
T Consensus 127 -------------------------------------------------------~~~~~~ghG~sINeik~~p~~~qlv 151 (385)
T KOG1034|consen 127 -------------------------------------------------------CSKNYRGHGGSINEIKFHPDRPQLV 151 (385)
T ss_pred -------------------------------------------------------hccceeccCccchhhhcCCCCCcEE
Confidence 334567899999999999998 99
Q ss_pred EEEECCCcEEEEECCCCeeeeEee----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-------------
Q 005646 369 LSASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD------------- 431 (686)
Q Consensus 369 ~s~s~Dg~V~iWd~~~~~~~~~~~----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~------------- 431 (686)
+++|.|.+||+|++++..|+..|. |.+.|.++.|++ ++.+|++++.|.+|.+|++...+...
T Consensus 152 ls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t 230 (385)
T KOG1034|consen 152 LSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT 230 (385)
T ss_pred EEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence 999999999999999999999997 999999999999 99999999999999999998532110
Q ss_pred ----------------EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe-e-----eeeeeEEeeccccCCCCCe
Q 005646 432 ----------------WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH-L-----ELDAEICVHSKKKAPCKRI 489 (686)
Q Consensus 432 ----------------~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~-~-----~~~~~~~~~~~~~~~~~~I 489 (686)
..-|+..|-|+.|- |.++++=+.++.|..|..-.-. - ..................|
T Consensus 231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~i 308 (385)
T KOG1034|consen 231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDI 308 (385)
T ss_pred cCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccce
Confidence 11233344444443 5688888899999999872111 0 1111112222233344556
Q ss_pred EEEEE--eCCCCCeEEEEeCCCcEEEEeCCc-------------------ceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 490 TGFQF--LPQDSSKVMVSCADSQVRILQGPN-------------------VIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 490 ~~l~f--sp~~~~~l~~~s~D~~I~iwd~~~-------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
.-+.| .| -.+.|+.|...|.|.+||+.+ ..+|+.||..|+...+|++|.-||.-
T Consensus 309 Wfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 309 WFIRFAFDP-WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEEeecH-HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 65554 45 467889999999999999653 24677799999999999999999853
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-18 Score=190.93 Aligned_cols=235 Identities=15% Similarity=0.202 Sum_probs=183.9
Q ss_pred ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCCC
Q 005646 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
.++.|..||.|.+|+..+... -.......++..|++.|..+.|++. +++||+|+.||.|.|||+...+.-....
T Consensus 82 lIaGG~edG~I~ly~p~~~~~-~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---- 156 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIA-NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---- 156 (1049)
T ss_pred eeeccccCCceEEecchhhcc-CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC----
Confidence 478899999999999876311 1111223456779999999999996 5599999999999999997644111000
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSA 371 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~ 371 (686)
-..-.+.|.+|+|+..- .|+++
T Consensus 157 --------------------------------------------------------~~~~~~eI~~lsWNrkvqhILAS~ 180 (1049)
T KOG0307|consen 157 --------------------------------------------------------SQAPPSEIKCLSWNRKVSHILASG 180 (1049)
T ss_pred --------------------------------------------------------CCCCcccceEeccchhhhHHhhcc
Confidence 01245789999998865 89999
Q ss_pred ECCCcEEEEECCCCeeeeEee-CC--CCeEEEEEeecCCCEEEEEEcCC---cEEEEecCCCc--EEEEeccCCcEEEEE
Q 005646 372 SIDKTVRLWRVGNDHCLRVFP-HS--NYVTCVHFNPVDDNYFISGSIDG---KVRIWAVLSCH--VVDWVDIRQIVTAVC 443 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~-h~--~~V~~v~fsp~~~~~l~sgs~Dg---~V~iwd~~~~~--~~~~~~~~~~V~~v~ 443 (686)
+.+|.+.|||++..+.+..+. +. ..+..++|||.+...+++++.|. .|.+||+|... +..+..|...|.++.
T Consensus 181 s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gilsls 260 (1049)
T KOG0307|consen 181 SPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLS 260 (1049)
T ss_pred CCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeec
Confidence 999999999999998887777 33 34889999997778888888764 59999998643 334568999999999
Q ss_pred EccCC-CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 444 YRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 444 ~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
|++.+ .++++++.|++|.+|+..+++.... .......+..+.|+|.++..+++++-||.|.|+.+..
T Consensus 261 Wc~~D~~lllSsgkD~~ii~wN~~tgEvl~~--------~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 261 WCPQDPRLLLSSGKDNRIICWNPNTGEVLGE--------LPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cCCCCchhhhcccCCCCeeEecCCCceEeee--------cCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 99965 8999999999999999999875542 2234578999999998888999999999999987653
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.7e-17 Score=165.75 Aligned_cols=193 Identities=17% Similarity=0.242 Sum_probs=148.3
Q ss_pred CCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 345 ~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
.+-..+.||++.|.+|+..|.| .|++|+.||+|+||.+.++.|++++...+.|.||+|+|.....++..+....+.|.+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 3456778999999999999999 999999999999999999999999999999999999995444444444444455543
Q ss_pred cCCC--------------------------------------cEEEEeccCCcEEEEEEccCCCEEEEEecC---CcEEE
Q 005646 424 VLSC--------------------------------------HVVDWVDIRQIVTAVCYRPDGQGGIVGSMM---GDCRF 462 (686)
Q Consensus 424 ~~~~--------------------------------------~~~~~~~~~~~V~~v~~spdg~~l~~gs~d---g~i~i 462 (686)
..-| .+...+.|...|..+.|+..|.||++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 3111 122345677789999999999999997654 45999
Q ss_pred EeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------cceeEcCCCC
Q 005646 463 YNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP---------------NVIGKYKDGK 527 (686)
Q Consensus 463 wd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~---------------~~~~~~~dg~ 527 (686)
+++...+.+.. .....+.|.++.|+| ...+|++++ ...|||||+. +.++++|.|.
T Consensus 551 HQLSK~~sQ~P--------F~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 551 HQLSKRKSQSP--------FRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred EecccccccCc--------hhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC
Confidence 99987654321 122336699999999 445555444 4679999965 3477889999
Q ss_pred EEEEEeCCCcEEEEeCCCCC
Q 005646 528 HIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 528 ~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.|+.|+.|+.+..+|++-..
T Consensus 621 nli~gs~d~k~~WfDldlss 640 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSS 640 (733)
T ss_pred eEEEecCCCeeEEEEcccCc
Confidence 99999999999999998754
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-17 Score=160.89 Aligned_cols=310 Identities=17% Similarity=0.206 Sum_probs=205.1
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
...+.+|.+.|.+|.|+.++++|++||.|..+++|++...-.-+
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k------------------------------------ 92 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK------------------------------------ 92 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc------------------------------------
Confidence 35678999999999999999999999999999999986532100
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEec-cCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCC---Ce
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFH-GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSN---YV 397 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~---~V 397 (686)
..||+.... .|...|.||+|...+ +|++|..+++|.+.|+.+.+.+.++.|.+ .|
T Consensus 93 --------------------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~V 152 (609)
T KOG4227|consen 93 --------------------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDV 152 (609)
T ss_pred --------------------CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccce
Confidence 013444443 466899999998877 99999999999999999999999999765 99
Q ss_pred EEEEEeecCCCEEEEEEcCCcEEEEecCCCc----EEEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeee
Q 005646 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCH----VVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 398 ~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~----~~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~ 472 (686)
..+..+| ..+.|++.+.++.|.+||++..+ ++...........+.|+| ...+|++.+..+-+.+||.+......
T Consensus 153 Y~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~ 231 (609)
T KOG4227|consen 153 YHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV 231 (609)
T ss_pred eecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchH
Confidence 9999999 68999999999999999998765 344445566788899999 45678889999999999987644221
Q ss_pred eeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc---------------------eeEcCCCCEEEE
Q 005646 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV---------------------IGKYKDGKHIVS 531 (686)
Q Consensus 473 ~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~---------------------~~~~~dg~~l~s 531 (686)
...-...+ .......-.++.|+| ++..+++--....-.+||.... -+.+.+..-++|
T Consensus 232 ~~~~~~~~-L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~t 309 (609)
T KOG4227|consen 232 YQRSMFKG-LPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVAT 309 (609)
T ss_pred Hhhhcccc-CcccchhhhheeeCC-CCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeec
Confidence 10000000 011112235677888 5555554433333333333221 112225556999
Q ss_pred EeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCC--CcccccCCCccccCc
Q 005646 532 AGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDS--PENLAFAPARFSLGQ 609 (686)
Q Consensus 532 gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~--~~~~~~spd~~~~~~ 609 (686)
|+.+=.|++|.+......-. ..+.-+.-+...+ .+--...+.++.+|- .+.+.|+|. ..
T Consensus 310 GSD~~~i~~WklP~~~ds~G-~~~IG~~~~~~~~--------------~~~i~~~~~VLrGHRSv~NQVRF~~H----~~ 370 (609)
T KOG4227|consen 310 GSDHWGIHIWKLPRANDSYG-FTQIGHDEEEMPS--------------EIFIEKELTVLRGHRSVPNQVRFSQH----NN 370 (609)
T ss_pred cCcccceEEEecCCCccccC-ccccCcchhhCch--------------hheecceeEEEecccccccceeecCC----cc
Confidence 99999999999865432110 0000000000000 000012233444443 445667776 34
Q ss_pred cccccCCCCCCCCCCCCcCCC
Q 005646 610 EYVFESFPKGCATWPEEKLPA 630 (686)
Q Consensus 610 ~~~~~s~d~~~~~W~~~~~~~ 630 (686)
.+.+....+.+++|+.-++|-
T Consensus 371 ~l~SSGVE~~~KlWS~~r~P~ 391 (609)
T KOG4227|consen 371 LLVSSGVENSFKLWSDHRLPW 391 (609)
T ss_pred eEeccchhhheeccccccCCc
Confidence 445666778889999777763
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-16 Score=168.22 Aligned_cols=318 Identities=15% Similarity=0.209 Sum_probs=211.0
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCC---CEEEEEeCCCcEEEEEeecCe
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG---QYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg---~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
..|+.++..++ +..+..|+||...+. .+...+.+|..+++.+.+.|.. .|+++++.||+|++||...+.
T Consensus 22 avfSnD~k~l~-~~~~~~V~VyS~~Tg-------~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~ 93 (792)
T KOG1963|consen 22 AVFSNDAKFLF-LCTGNFVKVYSTATG-------ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE 93 (792)
T ss_pred cccccCCcEEE-EeeCCEEEEEecchH-------hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE
Confidence 34555655544 456788999965543 2345788999999999998853 478899999999999999999
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
.+..+...-...... +.+.....-..+....+....+.............+....+ ...+...+..|.. -..+.++
T Consensus 94 Llkt~~~~~~v~~~~-~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~--~~~~~d~~~~~~~-~~~I~~~ 169 (792)
T KOG1963|consen 94 LLKTFDNNLPVHALV-YKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATF--DSAKGDFLKEHQE-PKSIVDN 169 (792)
T ss_pred EEEEEecCCceeEEE-echhHhCccceeEeecccceeeeecccccccceeeeEeeec--cccchhhhhhhcC-CccEEEc
Confidence 888776543322111 11111100011111111111111111111000000000000 0111122223333 3567788
Q ss_pred CCCEEEEEECCCcEEEEECCCCeeeeE-----eeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC-----CcEEEEe
Q 005646 364 KNNYLLSASIDKTVRLWRVGNDHCLRV-----FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-----CHVVDWV 433 (686)
Q Consensus 364 ~~~~L~s~s~Dg~V~iWd~~~~~~~~~-----~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-----~~~~~~~ 433 (686)
+.+.+...-.+..+.+|+...+..... ..|.-.++|.+++| +++++++|..||+|.+|.--. ..+..+.
T Consensus 170 ~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH 248 (792)
T KOG1963|consen 170 NSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLH 248 (792)
T ss_pred CCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEE
Confidence 888666666677899999987651111 12777799999999 999999999999999995432 2233444
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
=|...|++++|+++|.+|++|+..|.+-+|.+.+++.++.. .-..+|..+.++| ++...++...|++|.+
T Consensus 249 WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLP---------RLgs~I~~i~vS~-ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLP---------RLGSPILHIVVSP-DSDLYSLVLEDNQIHL 318 (792)
T ss_pred ecccccceeEEecCCceEeecccceEEEEEeecCCCccccc---------ccCCeeEEEEEcC-CCCeEEEEecCceEEE
Confidence 57889999999999999999999999999999998854422 2347799999999 8899999999999999
Q ss_pred EeCCc--------------------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 514 LQGPN--------------------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 514 wd~~~--------------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
....+ .+++.|.-+.++-.+.-|.|.+||+-+..
T Consensus 319 i~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 319 IKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred EeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence 97532 24555555677777889999999998866
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=153.57 Aligned_cols=234 Identities=18% Similarity=0.311 Sum_probs=171.7
Q ss_pred eEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceE
Q 005646 253 ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332 (686)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (686)
...+.|+|||..|++-+.|..+++|++...-.-...... +. +
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~------~~-------------~------------------- 93 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGP------LN-------------F------------------- 93 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCc------cc-------------c-------------------
Confidence 456899999999999999999999998542210000000 00 0
Q ss_pred EEeCCccccccCCCeEEec-cCCCCeeEEEee-------CCC-EEEEEECCCcEEEEECCCCeeeeEee---CCC---Ce
Q 005646 333 VVFPPKVFRILEKPLHEFH-GHSGEILDLSWS-------KNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSN---YV 397 (686)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s-------~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~---~V 397 (686)
+...+++ .....|.+.+|- |+. ++++.+.+.-|++||.-+|+....+. |.+ ..
T Consensus 94 ------------~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taA 161 (406)
T KOG2919|consen 94 ------------SKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAA 161 (406)
T ss_pred ------------ccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhh
Confidence 0001111 123456666664 444 88999999999999999999887776 544 45
Q ss_pred EEEEEeecCCCEEEEEEcCCcEEEEec-CCCc---EEEE-----eccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCC
Q 005646 398 TCVHFNPVDDNYFISGSIDGKVRIWAV-LSCH---VVDW-----VDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 398 ~~v~fsp~~~~~l~sgs~Dg~V~iwd~-~~~~---~~~~-----~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~ 467 (686)
.+++|+| |+.+|++|. ...|+++|+ +.++ +... .+..+.|.+++|+| +.+.+++|+...++-||.-..
T Consensus 162 hsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 162 HSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred eeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 6899999 999998775 679999999 5553 2222 23367799999999 556999999999999998776
Q ss_pred CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC-CCcEEEEeCCcc-------------------eeEcCCCC
Q 005646 468 NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVRILQGPNV-------------------IGKYKDGK 527 (686)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~-D~~I~iwd~~~~-------------------~~~~~dg~ 527 (686)
..+.+. ..+|.+.|+.++|++ +++.|++|+. |..|..||+... ....|+++
T Consensus 240 ~~pl~l--------lggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~ 310 (406)
T KOG2919|consen 240 RRPLQL--------LGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGE 310 (406)
T ss_pred CCceee--------ecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCc
Confidence 654331 336789999999999 7788888874 889999997532 23456999
Q ss_pred EEEEEeCCCcEEEEeCCCCC
Q 005646 528 HIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 528 ~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+|++|+.||.|++||+++..
T Consensus 311 ~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 311 ILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred eeeccCCCccEEEEecCCCC
Confidence 99999999999999999843
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.8e-17 Score=159.38 Aligned_cols=193 Identities=19% Similarity=0.299 Sum_probs=153.9
Q ss_pred CCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCe-------eeeEee-CCCCeEEEEEeecCCCEEEEEE
Q 005646 345 KPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDH-------CLRVFP-HSNYVTCVHFNPVDDNYFISGS 414 (686)
Q Consensus 345 ~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~-------~~~~~~-h~~~V~~v~fsp~~~~~l~sgs 414 (686)
+..-.+.||+++|++++|+|-+ .|||||.|.+|.||++..+. ++..+. |...|.-|+|+|.-.+.|++++
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 3445678999999999999976 99999999999999997553 333444 9999999999998899999999
Q ss_pred cCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCC-CCCeEEEE
Q 005646 415 IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP-CKRITGFQ 493 (686)
Q Consensus 415 ~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~I~~l~ 493 (686)
.|.+|.||++.+++.+....|...|.+++|+.||.++++.+.|..|||||.+++++.... .+| ..+-..+.
T Consensus 152 ~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~--------~~heG~k~~Rai 223 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG--------VAHEGAKPARAI 223 (472)
T ss_pred CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec--------ccccCCCcceeE
Confidence 999999999999998877889999999999999999999999999999999999876543 112 22344556
Q ss_pred EeCCCCCeEEEEe----CCCcEEEEeCCcc----------------eeEc-CCCCEEE-EEeCCCcEEEEeCCCCC
Q 005646 494 FLPQDSSKVMVSC----ADSQVRILQGPNV----------------IGKY-KDGKHIV-SAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 494 fsp~~~~~l~~~s----~D~~I~iwd~~~~----------------~~~~-~dg~~l~-sgs~Dg~V~iWd~~~~~ 547 (686)
|.. ++. +++++ .+.++-+||..+. +.|+ +|.+.|. +|-.|+.||-|.+.+..
T Consensus 224 fl~-~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 224 FLA-SGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred Eec-cCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 666 556 55544 4788999986542 2333 3555554 55689999999998765
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8e-18 Score=173.17 Aligned_cols=245 Identities=19% Similarity=0.307 Sum_probs=177.4
Q ss_pred eecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEe
Q 005646 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (686)
++..|...|+.+.|.|....|++|+.||+|++|+++....-.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~-------------------------------------- 330 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSA-------------------------------------- 330 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCcc--------------------------------------
Confidence 677899999999999998999999999999999994311000
Q ss_pred eccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCe----------eeeEe-e
Q 005646 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH----------CLRVF-P 392 (686)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~----------~~~~~-~ 392 (686)
...-+++.+|++|.++|.|+++.+++ ++++|+.||+|+.|++.... ....+ +
T Consensus 331 ----------------~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~G 394 (577)
T KOG0642|consen 331 ----------------EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLG 394 (577)
T ss_pred ----------------ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceec
Confidence 00015889999999999999999999 99999999999999664211 11222 3
Q ss_pred CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec--cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD--IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 393 h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~--~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
|.+.|+.+++++ ....|++++.||+||+|+........+.. ..+..+.+.+.... .+....+.....+++.+...
T Consensus 395 htdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~ev 471 (577)
T KOG0642|consen 395 HTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDMEV 471 (577)
T ss_pred cccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccch--hHhhhhhcccccccchhhhh
Confidence 999999999999 88889999999999999988776632222 22334555554332 22222334555555544333
Q ss_pred eeeeeEEeecc--ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------cceeEcCCCCEEEEEe
Q 005646 471 ELDAEICVHSK--KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP---------------NVIGKYKDGKHIVSAG 533 (686)
Q Consensus 471 ~~~~~~~~~~~--~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~---------------~~~~~~~dg~~l~sgs 533 (686)
.....+..... .......+.-+..+| ...+.+++..|+.|+++|.. +.+++-|+|-+|++++
T Consensus 472 ~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s 550 (577)
T KOG0642|consen 472 VSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS 550 (577)
T ss_pred hhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeec
Confidence 33222211111 111224577788888 67899999999999999843 5578889999999999
Q ss_pred CCCcEEEEeCCCCC
Q 005646 534 EDSNVYMWNCIGHE 547 (686)
Q Consensus 534 ~Dg~V~iWd~~~~~ 547 (686)
.|+.|++|++....
T Consensus 551 ~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 551 HDGSVRLWKLDVKT 564 (577)
T ss_pred CCceeehhhccchh
Confidence 99999999997654
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=154.74 Aligned_cols=176 Identities=18% Similarity=0.256 Sum_probs=142.5
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeec-CCCEEEEEEcCCcEEEEecCCCcEE---EEeccC-CcEE
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVV---DWVDIR-QIVT 440 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~-~~~~l~sgs~Dg~V~iwd~~~~~~~---~~~~~~-~~V~ 440 (686)
.+|++-..|+|++||..+++.+..|. ++..++.+.|... .+..+++|+.||+||+||+|..... .+..+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 67888889999999999999999998 8889999999763 4678999999999999999987644 344444 4566
Q ss_pred EEEEccCCCEEEEEec----CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 441 AVCYRPDGQGGIVGSM----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
+++..-.++.+++|+. +-.+.+||++..+.. +......|...|++++|+|.++++|++|+.||.|.++|.
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccch------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 6666667788888754 567999999876642 233456788999999999999999999999999999996
Q ss_pred Cc------------------ceeEcCCC-CEEEEEeCCCcEEEEeCCCCCC
Q 005646 517 PN------------------VIGKYKDG-KHIVSAGEDSNVYMWNCIGHEE 548 (686)
Q Consensus 517 ~~------------------~~~~~~dg-~~l~sgs~Dg~V~iWd~~~~~~ 548 (686)
.. .+.|..++ +.|.+-+...+.++|+++.+.+
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 42 24555554 5799999999999999998873
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=185.40 Aligned_cols=263 Identities=16% Similarity=0.232 Sum_probs=194.9
Q ss_pred eccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCE----EEEEeCCCcEEEEEeecCeeeeeeccCCCCC
Q 005646 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQY----LASAGDDGVVRLWQVVEDERLTEVDIPEIDP 295 (686)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~----Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~ 295 (686)
+.+.++-||.+.....+. .+.....+. -...-+.++|.+.|.. ||.|.+||.|.+||...-..-.
T Consensus 36 st~~slEifeld~~~~~~-dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~--------- 104 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESS-DLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANA--------- 104 (1049)
T ss_pred ccccccceeeecccCccc-ccccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCc---------
Confidence 445666777665443321 011111111 2346788999987665 9999999999999976421000
Q ss_pred cceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEEC
Q 005646 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASI 373 (686)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~ 373 (686)
....+..+..|.+.|..|.|++.+ .||+|+.
T Consensus 105 -----------------------------------------------~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~ 137 (1049)
T KOG0307|consen 105 -----------------------------------------------SEEVLATKSKHTGPVLGLDFNPFQGNLLASGAD 137 (1049)
T ss_pred -----------------------------------------------chHHHhhhcccCCceeeeeccccCCceeeccCC
Confidence 012345566799999999999976 9999999
Q ss_pred CCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccC--CcEEEEEEccC
Q 005646 374 DKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIR--QIVTAVCYRPD 447 (686)
Q Consensus 374 Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~--~~V~~v~~spd 447 (686)
||.|.|||+..-+.-..+. ..+.|.+++|+.....+|++++.+|++.|||++..+.+ .+..+. ..+..+.|+|+
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD 217 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence 9999999998765544442 56889999999877889999999999999999988654 443332 45889999997
Q ss_pred C-CEEEEEecCC---cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc----
Q 005646 448 G-QGGIVGSMMG---DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV---- 519 (686)
Q Consensus 448 g-~~l~~gs~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~---- 519 (686)
. ..+++++.|. .|.+||++...-.. .....|...|.++.|++.|..+|++++.|++|.+|+..+.
T Consensus 218 ~aTql~~As~dd~~PviqlWDlR~assP~-------k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 218 HATQLLVASGDDSAPVIQLWDLRFASSPL-------KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred CceeeeeecCCCCCceeEeecccccCCch-------hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 6 4566666654 39999987544221 1235688899999999999999999999999999998762
Q ss_pred -----------eeEcC-CCCEEEEEeCCCcEEEEeCCCCC
Q 005646 520 -----------IGKYK-DGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 520 -----------~~~~~-dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.|.| +-..++.++-||.|-||.+.+..
T Consensus 291 ~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 291 ELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 45666 44588999999999999998865
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=165.92 Aligned_cols=256 Identities=16% Similarity=0.281 Sum_probs=198.6
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
-.+|.++|..++.+. +.++.|||...... .+++++|+..|.|++|+.||+.+|+|+.|+.|.+|+-+-...
T Consensus 17 d~afkPDGsqL~lAA-g~rlliyD~ndG~l-------lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~- 87 (1081)
T KOG1538|consen 17 DIAFKPDGTQLILAA-GSRLLVYDTSDGTL-------LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI- 87 (1081)
T ss_pred eeEECCCCceEEEec-CCEEEEEeCCCccc-------ccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-
Confidence 367889999888765 56789998765543 578999999999999999999999999999999998532110
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
.-..|.+.|.|+.|+|-
T Consensus 88 ---------------------------------------------------------------LkYSH~D~IQCMsFNP~ 104 (1081)
T KOG1538|consen 88 ---------------------------------------------------------------LKYSHNDAIQCMSFNPI 104 (1081)
T ss_pred ---------------------------------------------------------------eeeccCCeeeEeecCch
Confidence 01259999999999998
Q ss_pred C-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe---ccCCcEEE
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV---DIRQIVTA 441 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~---~~~~~V~~ 441 (686)
. .|++++-. -.-+|..... .+........|.+.+|.. ||.+|+.|-.||+|.|-+-...+.+... +..++|.+
T Consensus 105 ~h~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiws 181 (1081)
T KOG1538|consen 105 THQLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWS 181 (1081)
T ss_pred HHHhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecC-CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceE
Confidence 8 88888764 3567866543 233334567789999998 9999999999999999876554444333 35788999
Q ss_pred EEEccCC-----CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 442 VCYRPDG-----QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 442 v~~spdg-----~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
++|+|.. ..+++.....++.+|.++..... +.+.-.-...++++.+ ++.++++|+.|+.+.+|.-
T Consensus 182 i~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Ig---------k~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 182 ICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIG---------KDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFTR 251 (1081)
T ss_pred EEecCCCCCCccceEEEEeccceeEEEEecceeec---------ccccCCCCchhheecc-CCcEEEEccCCCceEEEee
Confidence 9999953 46888888899999988754322 1222334467899999 8999999999999999853
Q ss_pred C--------------cceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 517 P--------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 517 ~--------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
. -.++..|++++++.|..||+|..|++...
T Consensus 252 ~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 252 DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 2 13678899999999999999999998543
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.4e-17 Score=166.58 Aligned_cols=249 Identities=19% Similarity=0.232 Sum_probs=182.0
Q ss_pred eeeecCCCccceeeccceEEEEEcCCcccc-ccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKE-LSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~-~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
..|.+....+++++.++.+++|.+.+..+. .....+..+|++|.++|.|+++.++++++++||.||+|+.|++....--
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc
Confidence 345566678999999999999999553221 2233455689999999999999999999999999999999988532200
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
... +++ ......+.||.+.|+.+++|+.
T Consensus 380 --~ds--------------------------------------------~dp------~vl~~~l~Ghtdavw~l~~s~~ 407 (577)
T KOG0642|consen 380 --DDS--------------------------------------------YDP------SVLSGTLLGHTDAVWLLALSST 407 (577)
T ss_pred --ccc--------------------------------------------cCc------chhccceeccccceeeeeeccc
Confidence 000 000 0234567899999999999998
Q ss_pred C-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc------
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI------ 435 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~------ 435 (686)
. .|++++.||+|++|+.....+ .+|. ..++-+++.|-.....+.++...-+.--++++...+.+.++..
T Consensus 408 ~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~ 486 (577)
T KOG0642|consen 408 KDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP 486 (577)
T ss_pred ccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcc
Confidence 8 999999999999999877666 4444 4566677777542223333333333333444444433333221
Q ss_pred --CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 436 --RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 436 --~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
...+..+.++|.+...+++..|+.|+++|..++++... ..+|...++++++.| ++.+|++++.|+++++
T Consensus 487 ~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s--------~~a~~~svtslai~~-ng~~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 487 RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS--------MVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRL 557 (577)
T ss_pred cccCccceEEecCCCCeeEecccCCceecccccccccchh--------eeeccceecceeecC-CCceEEeecCCceeeh
Confidence 23477889999999999999999999999998876543 345667799999999 8999999999999999
Q ss_pred EeCC
Q 005646 514 LQGP 517 (686)
Q Consensus 514 wd~~ 517 (686)
|...
T Consensus 558 ~kld 561 (577)
T KOG0642|consen 558 WKLD 561 (577)
T ss_pred hhcc
Confidence 9763
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5e-16 Score=145.86 Aligned_cols=268 Identities=15% Similarity=0.134 Sum_probs=170.6
Q ss_pred cccCcceeeecCC-CccceeeccceEEEEEcCCccccccccccCceec-ccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEGERVRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQ-AHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~~~~s~~~-~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
++...++++-++. ++|..|...|.|++|.+..... ...++ .|...|+.+.--|+ ..|.|-+.|+.+.+|+
T Consensus 12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~-------~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERD-------LPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred cccchheehhhccchhhhcccccceEEEEEeecCcc-------chhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4455555555443 4689999999999998876543 23345 57889999999987 4688999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCce--eeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELK--PLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
+..+..+..-.+.........|+........ .+.....+..............+.+-+ ..-.+..+.
T Consensus 84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d-----------d~~~~Klgs 152 (323)
T KOG0322|consen 84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD-----------DSERSKLGS 152 (323)
T ss_pred ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC-----------chhccccCc
Confidence 9876544433322222221122111111111 111111111110000000000000000 011235567
Q ss_pred eeEEEeeCC-C---EEEEEECCCcEEEEECCCCeeeeEe-----------eCCCCeEEEEEeecCCCEEEEEEcCCcEEE
Q 005646 357 ILDLSWSKN-N---YLLSASIDKTVRLWRVGNDHCLRVF-----------PHSNYVTCVHFNPVDDNYFISGSIDGKVRI 421 (686)
Q Consensus 357 V~~l~~s~~-~---~L~s~s~Dg~V~iWd~~~~~~~~~~-----------~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~i 421 (686)
+++..|... + +|+.|-.+|.|.+||+.++..+..+ .|..+|.++.|.+ .-+.=++|+.+.++..
T Consensus 153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~ 231 (323)
T KOG0322|consen 153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVM 231 (323)
T ss_pred eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCcccccee
Confidence 888876433 2 7778889999999999997333222 2899999999998 6666778888999999
Q ss_pred EecCCC--cEE---EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 422 WAVLSC--HVV---DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 422 wd~~~~--~~~---~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
|.+... .+. ...-.+..|..+.+.||++.+|+++.|++||||+.++..... ..+.|...|++++|+|
T Consensus 232 ~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA--------VLkyHsagvn~vAfsp 303 (323)
T KOG0322|consen 232 YSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA--------VLKYHSAGVNAVAFSP 303 (323)
T ss_pred eeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh--------hhhhhhcceeEEEeCC
Confidence 988643 222 222234568899999999999999999999999998876543 2455778899999999
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-15 Score=164.83 Aligned_cols=283 Identities=19% Similarity=0.323 Sum_probs=201.4
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee--CCCEEEEEeCCCcEEEEEeecC
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~vWd~~~~ 282 (686)
....|++-...++++....+|.|||+.+... +.....+ . .-...|+.|.+-. |..+|++|+.||.||||+--..
T Consensus 1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-l~~F~n~-~--~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRL-LNGFDNG-A--FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred ceeeecCCCceeEEcCCcceEEEEecccCce-eccccCC-C--CCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 4556777778888888889999999987643 1111111 0 2345799999865 5668999999999999974322
Q ss_pred e-eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 283 E-RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 283 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
. ...++ +..+.. .--.+.+-.+.=.-+.
T Consensus 1144 ~~~~~eL--------------------------------VTaw~~-------------------Ls~~~~~~r~~~~v~d 1172 (1387)
T KOG1517|consen 1144 KWKKPEL--------------------------------VTAWSS-------------------LSDQLPGARGTGLVVD 1172 (1387)
T ss_pred ccCCcee--------------------------------EEeecc-------------------ccccCccCCCCCeeee
Confidence 1 00000 000000 0000111112224567
Q ss_pred eeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc----EEEEec
Q 005646 362 WSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH----VVDWVD 434 (686)
Q Consensus 362 ~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~----~~~~~~ 434 (686)
|.... +|++++.-..|+|||....+++..+. ...-|+++.-+-..+++|+.|..||.||+||.+... +..+..
T Consensus 1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~ 1252 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE 1252 (1387)
T ss_pred hhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc
Confidence 77655 88888888999999999999988877 567788887766578999999999999999998653 235566
Q ss_pred cCCc--EEEEEEccCCCE-EEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 435 IRQI--VTAVCYRPDGQG-GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 435 ~~~~--V~~v~~spdg~~-l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
|... |..+.+.+.|-. |++|+.+|.|++||++.........+..+ ...++..+++..++ ....+++|+. +.|
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~---~~yGs~lTal~VH~-hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH---WEYGSALTALTVHE-HAPIIASGSA-QLI 1327 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec---cccCccceeeeecc-CCCeeeecCc-ceE
Confidence 6665 999999997765 99999999999999987533222222111 11123589999999 7889999999 999
Q ss_pred EEEeCC---------------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 512 RILQGP---------------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 512 ~iwd~~---------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.||+.. .+++|+|-.-+||+|+.|.+|.||....+.
T Consensus 1328 kIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1328 KIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 999853 457899999999999999999999987654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=163.58 Aligned_cols=218 Identities=20% Similarity=0.319 Sum_probs=162.4
Q ss_pred HHhhcccceeeecccCcceeeecCCCccce--eeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEE
Q 005646 189 WFSRLRSLACVVDKQGEGERVRLNEEDAMF--CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYL 265 (686)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~L 265 (686)
++.+++.+.. .-.+|.+.|..+...++. .+..|.|-||++....+-....... +. ....|+.+.|.| |.+.|
T Consensus 569 hi~NLrnln~--~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~--l~-Ngt~vtDl~WdPFD~~rL 643 (1012)
T KOG1445|consen 569 HISNLRNLNT--RLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPG--LF-NGTLVTDLHWDPFDDERL 643 (1012)
T ss_pred hhhhhhcccc--cCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccc--cc-cCceeeecccCCCChHHe
Confidence 4444444332 223466667777776654 5678999999987654422222111 11 346799999999 78899
Q ss_pred EEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCC
Q 005646 266 ASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEK 345 (686)
Q Consensus 266 asgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (686)
|.++.||.|++|.+..+...... ..
T Consensus 644 AVa~ddg~i~lWr~~a~gl~e~~-------------------------------------------------------~t 668 (1012)
T KOG1445|consen 644 AVATDDGQINLWRLTANGLPENE-------------------------------------------------------MT 668 (1012)
T ss_pred eecccCceEEEEEeccCCCCccc-------------------------------------------------------CC
Confidence 99999999999999876522111 13
Q ss_pred CeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEE
Q 005646 346 PLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iw 422 (686)
|-..+.+|...|+.|.|+|-- .|++++.|.+|+|||+.+++....+. |.+.|..++|+| +++.+++.+.||+|++|
T Consensus 669 Pe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy 747 (1012)
T KOG1445|consen 669 PEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVY 747 (1012)
T ss_pred cceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEe
Confidence 556778899999999999965 99999999999999999998877776 999999999999 99999999999999999
Q ss_pred ecCCCcEEEEec---cCCcEEEEEEccCCCEEEEEecCC----cEEEEeCCC
Q 005646 423 AVLSCHVVDWVD---IRQIVTAVCYRPDGQGGIVGSMMG----DCRFYNVSD 467 (686)
Q Consensus 423 d~~~~~~~~~~~---~~~~V~~v~~spdg~~l~~gs~dg----~i~iwd~~~ 467 (686)
..+.++.-...+ ....--.|.|.-||+++++.+.|. .|.+||..+
T Consensus 748 ~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 748 EPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred CCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 998876432221 112234577888999998877654 588888754
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-14 Score=151.63 Aligned_cols=262 Identities=15% Similarity=0.196 Sum_probs=171.7
Q ss_pred ceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe-CCCcEEEEEeecCeeeeeeccCCCCC
Q 005646 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-DDGVVRLWQVVEDERLTEVDIPEIDP 295 (686)
Q Consensus 217 ~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~vWd~~~~~~~~~~~~~~~~~ 295 (686)
++...++.|.+|++... ..+ ...+.+. +.+....|+++|++++|+.++ .++.|.+|++.....+...
T Consensus 6 ~~~~~~~~I~~~~~~~~-g~l---~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~------- 73 (330)
T PRK11028 6 IASPESQQIHVWNLNHE-GAL---TLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA------- 73 (330)
T ss_pred EEcCCCCCEEEEEECCC-Cce---eeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe-------
Confidence 34467899999998532 111 1123333 345677899999999987764 4788999998632111000
Q ss_pred cceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEE-C
Q 005646 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS-I 373 (686)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s-~ 373 (686)
... ...+....++++|++ +|++++ .
T Consensus 74 ----------------------------------------------------~~~-~~~~~p~~i~~~~~g~~l~v~~~~ 100 (330)
T PRK11028 74 ----------------------------------------------------AES-PLPGSPTHISTDHQGRFLFSASYN 100 (330)
T ss_pred ----------------------------------------------------eee-cCCCCceEEEECCCCCEEEEEEcC
Confidence 000 012235689999999 666665 4
Q ss_pred CCcEEEEECCCC----eeeeEeeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecCCCcEEE-------EeccCCcEEE
Q 005646 374 DKTVRLWRVGND----HCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCHVVD-------WVDIRQIVTA 441 (686)
Q Consensus 374 Dg~V~iWd~~~~----~~~~~~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~~~~~~-------~~~~~~~V~~ 441 (686)
++.|.+|++.+. +.+..+.+.....+++++| +++++++++ .++.|++||+.+...+. ..........
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~ 179 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRH 179 (330)
T ss_pred CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCce
Confidence 899999999743 2233333445678899999 888776554 56999999997633221 1122345678
Q ss_pred EEEccCCCEEEEEec-CCcEEEEeCCC--CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe-CCCcEEEEeCC
Q 005646 442 VCYRPDGQGGIVGSM-MGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGP 517 (686)
Q Consensus 442 v~~spdg~~l~~gs~-dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s-~D~~I~iwd~~ 517 (686)
+.|+|+|+++++++. +++|.+|++.. +.+.....+........+......+.++| ++++++++. .++.|.+|+..
T Consensus 180 ~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 180 MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEe
Confidence 999999999988876 89999999974 33322212111111111222345688999 777777765 47899999742
Q ss_pred ------------------cceeEcCCCCEEEEEeC-CCcEEEEeCCC
Q 005646 518 ------------------NVIGKYKDGKHIVSAGE-DSNVYMWNCIG 545 (686)
Q Consensus 518 ------------------~~~~~~~dg~~l~sgs~-Dg~V~iWd~~~ 545 (686)
..+.++|||++|+++.. +++|.+|+++.
T Consensus 259 ~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 259 EDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 23678889999998875 89999999864
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8e-15 Score=136.19 Aligned_cols=244 Identities=19% Similarity=0.254 Sum_probs=170.9
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccc---cccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSK---ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~---~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
.++++.+++++.|..+|.|.+..++.... +.......-..++|.++|..|+|. ..+|++|+. |.|+=|...+..
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~ 92 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEE 92 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhh
Confidence 36677888999999999999998764321 111112223458999999999998 447888875 999999887644
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
.....+ ..|+.. .|.+.-.-.-.+|++|...
T Consensus 93 es~~~K------------------------------------------------~lwe~~-~P~~~~~~evPeINam~ld 123 (325)
T KOG0649|consen 93 ESLATK------------------------------------------------RLWEVK-IPMQVDAVEVPEINAMWLD 123 (325)
T ss_pred hhccch------------------------------------------------hhhhhc-CccccCcccCCccceeEec
Confidence 210000 000000 0111101123478899888
Q ss_pred CCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccC-----
Q 005646 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR----- 436 (686)
Q Consensus 364 ~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~----- 436 (686)
|.. -++.++.|+.++-||+++|+..+++. |.++|.++.--. ....+++|+.||++|+||.++++.+..+...
T Consensus 124 P~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~ 202 (325)
T KOG0649|consen 124 PSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNL 202 (325)
T ss_pred cCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhh
Confidence 876 66666789999999999999999998 999999999854 5667899999999999999999988665421
Q ss_pred ------CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCc
Q 005646 437 ------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (686)
Q Consensus 437 ------~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~ 510 (686)
..|.+++. +..++++|+ .-.+.+|+++.........+. .++..+.|.. ..+++++..+.
T Consensus 203 lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpip---------a~v~~v~F~~---d~vl~~G~g~~ 267 (325)
T KOG0649|consen 203 LRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPIP---------ARVHLVDFVD---DCVLIGGEGNH 267 (325)
T ss_pred cCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEecc---------cceeEeeeec---ceEEEeccccc
Confidence 23555555 444888774 457999999887665443332 4577777865 57888887778
Q ss_pred EEEEeCCc
Q 005646 511 VRILQGPN 518 (686)
Q Consensus 511 I~iwd~~~ 518 (686)
|.-|....
T Consensus 268 v~~~~l~G 275 (325)
T KOG0649|consen 268 VQSYTLNG 275 (325)
T ss_pred eeeeeecc
Confidence 88877554
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-15 Score=163.22 Aligned_cols=253 Identities=18% Similarity=0.194 Sum_probs=187.5
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEe
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFT 301 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~ 301 (686)
+.+.||+++..... ... ..-...|+|++|+| +..+||.|..+|.|.+||+..+.... ..
T Consensus 222 ~~~~vW~~~~p~~P-e~~------~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--------~s----- 281 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTP-ELV------LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--------PS----- 281 (555)
T ss_pred ceEEEEecCCCCCc-eEE------EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC--------Cc-----
Confidence 47999998765321 111 12357899999999 67789999999999999998766311 00
Q ss_pred ecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC---EEEEEECCCcEE
Q 005646 302 VNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN---YLLSASIDKTVR 378 (686)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~---~L~s~s~Dg~V~ 378 (686)
..-.....|..+|+.+.|..+- .+++++.||.|.
T Consensus 282 -------------------------------------------~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 282 -------------------------------------------GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred -------------------------------------------ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 0011123599999999997754 599999999999
Q ss_pred EEECCCCeee------eEe-------eCCCCeEEEEEeecCCCEEEEEEcCCcEEEE---ecCCCc------EEEEeccC
Q 005646 379 LWRVGNDHCL------RVF-------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIW---AVLSCH------VVDWVDIR 436 (686)
Q Consensus 379 iWd~~~~~~~------~~~-------~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iw---d~~~~~------~~~~~~~~ 436 (686)
.|+++.-.+. ... .....++++.|.|.+.+.|+.|+.+|.|.-= +.+... ......|.
T Consensus 319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI 398 (555)
T ss_pred eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence 9988754321 111 1345789999999999999999999998772 333332 22455678
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEeCC-CCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVS-DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
++|+++.++|-+..++..+.|-+++||... .....+. ...+...+++++|+|..+..++++..||.|.+||
T Consensus 399 g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~--------~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLS--------LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred cceEeeecCCCccceeeeeccceeEeccccCCCCcchh--------hhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 999999999977766666669999999986 3333221 2234456999999998888999999999999999
Q ss_pred CC-----------------cceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 516 GP-----------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 516 ~~-----------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
+. +.+.+.++|+.|++|...|++++|++...
T Consensus 471 Ll~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 471 LLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred hhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 54 23556678999999999999999999753
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.8e-16 Score=159.69 Aligned_cols=221 Identities=19% Similarity=0.326 Sum_probs=175.1
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCce
Q 005646 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (686)
.|..++|-|||..|+.+.. ..+.|||.+.|.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~------------------------------------------------ 44 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGT------------------------------------------------ 44 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcc------------------------------------------------
Confidence 7999999999998877754 478999998875
Q ss_pred EEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEE
Q 005646 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF 410 (686)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l 410 (686)
.++++++|.+.|.+++|+.+| .+++|+.|+.|.+|.-. .+-+..+.|++.|.|+.|+| -...|
T Consensus 45 --------------llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYSH~D~IQCMsFNP-~~h~L 108 (1081)
T KOG1538|consen 45 --------------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYSHNDAIQCMSFNP-ITHQL 108 (1081)
T ss_pred --------------cccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeeeccCCeeeEeecCc-hHHHh
Confidence 467788999999999999999 99999999999999753 33445677999999999999 78889
Q ss_pred EEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeE
Q 005646 411 ISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (686)
Q Consensus 411 ~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~ 490 (686)
++++.. ..-+|......+.. ......+.+.+|..||++++.|-.+|+|.|-+-...... .+ ....+...+|.
T Consensus 109 asCsLs-dFglWS~~qK~V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~-----~I-~Rpgg~Nspiw 180 (1081)
T KOG1538|consen 109 ASCSLS-DFGLWSPEQKSVSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV-----KI-ERPGGSNSPIW 180 (1081)
T ss_pred hhcchh-hccccChhhhhHHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce-----EE-eCCCCCCCCce
Confidence 999865 46789876554432 233456889999999999999999999999865432211 11 12455778999
Q ss_pred EEEEeCCCC----CeEEEEeCCCcEEEEeCC--------------cceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 491 GFQFLPQDS----SKVMVSCADSQVRILQGP--------------NVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 491 ~l~fsp~~~----~~l~~~s~D~~I~iwd~~--------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+++|+|..+ ..+++.....++.++... -++..+++|.|+..|+.|+.+++|..+.
T Consensus 181 si~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G 253 (1081)
T KOG1538|consen 181 SICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG 253 (1081)
T ss_pred EEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC
Confidence 999999533 367777777888877642 2567788999999999999999998665
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-17 Score=174.93 Aligned_cols=234 Identities=23% Similarity=0.370 Sum_probs=179.2
Q ss_pred ccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccc
Q 005646 239 ALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKI 318 (686)
Q Consensus 239 ~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (686)
.+.....|.+|..+|.|..|...|.|++||+.|..++||...++.
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~----------------------------------- 223 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR----------------------------------- 223 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-----------------------------------
Confidence 334455688999999999999999999999999999999977765
Q ss_pred eeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCC
Q 005646 319 SILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNY 396 (686)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~ 396 (686)
++....||.+.|++++.+.++ +++++|.|..|++|.+.++.++.++. |++.
T Consensus 224 ---------------------------~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtga 276 (1113)
T KOG0644|consen 224 ---------------------------CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGA 276 (1113)
T ss_pred ---------------------------hhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccc
Confidence 445667999999999999888 99999999999999999999998887 9999
Q ss_pred eEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-----EeccCCcEEEEEEccCCCEEEEEecCCc------------
Q 005646 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-----WVDIRQIVTAVCYRPDGQGGIVGSMMGD------------ 459 (686)
Q Consensus 397 V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~-----~~~~~~~V~~v~~spdg~~l~~gs~dg~------------ 459 (686)
|++|+|+| +.+.+.||++++||.+-...+. .......+.++.|-..+..+++|+.|+.
T Consensus 277 vtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~ 351 (1113)
T KOG0644|consen 277 VTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWR 351 (1113)
T ss_pred eeeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhh
Confidence 99999999 3378899999999998211110 0011122333444444444444444444
Q ss_pred -------------------------EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 005646 460 -------------------------CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (686)
Q Consensus 460 -------------------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iw 514 (686)
+.+|++.++.+. .....|...+..+.++|-+....++++.||..-||
T Consensus 352 ~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~--------H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iw 423 (1113)
T KOG0644|consen 352 SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL--------HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIW 423 (1113)
T ss_pred ccceEEEeccccccccceeeeeeeEeeeeecccchhh--------hhhcccccceeeeeecCCCcHhhhhccCCCceEee
Confidence 444444444321 12456778899999999999999999999999999
Q ss_pred eCCcc---------------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 515 QGPNV---------------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 515 d~~~~---------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
|.... -.|++||..++....-|.++|.....++
T Consensus 424 di~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 424 DIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 96533 3577899999998888999998876554
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-15 Score=142.35 Aligned_cols=265 Identities=13% Similarity=0.147 Sum_probs=186.1
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCcccccc----c-cccCceec-ccCCceEEEEEe-------eCCCEEEEEeCCC
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELS----A-LYKGQEIQ-AHDGSILTMKFS-------PDGQYLASAGDDG 272 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~----~-~~~~~~l~-~H~~~I~~l~fs-------pdg~~Lasgs~Dg 272 (686)
.+.++++|..+++-+.|+.+.+|++........ . ..+..+++ .-...|...+|- |+..++|+.+.|.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 467899999999999999999999753211100 0 00011111 123567788886 5678999999999
Q ss_pred cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc
Q 005646 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (686)
Q Consensus 273 ~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (686)
-|++||.-+|+....+.. ..
T Consensus 134 PIh~wdaftG~lraSy~~------------------------------------------------------------yd 153 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRA------------------------------------------------------------YD 153 (406)
T ss_pred ceeeeeccccccccchhh------------------------------------------------------------hh
Confidence 999999999874433321 11
Q ss_pred CCC---CeeEEEeeCCCEEEEEECCCcEEEEEC-CCCeeee---Eee-----CCCCeEEEEEeecCCCEEEEEEcCCcEE
Q 005646 353 HSG---EILDLSWSKNNYLLSASIDKTVRLWRV-GNDHCLR---VFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVR 420 (686)
Q Consensus 353 h~~---~V~~l~~s~~~~L~s~s~Dg~V~iWd~-~~~~~~~---~~~-----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~ 420 (686)
|.. .-.+|+|+|||.-+.++...+|+++|+ +.|.--. ++. ..+-|.|++|+|.+...++.|+.-..+-
T Consensus 154 h~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~g 233 (406)
T KOG2919|consen 154 HQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVG 233 (406)
T ss_pred hHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceee
Confidence 322 235899999994444566789999999 4443222 222 3678999999998888999999999999
Q ss_pred EEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEec-CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC
Q 005646 421 IWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (686)
Q Consensus 421 iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~ 498 (686)
||.-..+..+ .+.+|.+.|+.++|.++|+.|++|.. +..|..||++.-+.... .+..+......+ .-+...| .
T Consensus 234 iy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~---~L~rhv~~TNQR-I~FDld~-~ 308 (406)
T KOG2919|consen 234 IYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY---ALERHVGDTNQR-ILFDLDP-K 308 (406)
T ss_pred eEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh---hhhhhccCccce-EEEecCC-C
Confidence 9988777665 55678999999999999999999876 77899999986543221 111111101111 2244556 7
Q ss_pred CCeEEEEeCCCcEEEEeCC----------------cceeEcCCCCEEEEEeCC
Q 005646 499 SSKVMVSCADSQVRILQGP----------------NVIGKYKDGKHIVSAGED 535 (686)
Q Consensus 499 ~~~l~~~s~D~~I~iwd~~----------------~~~~~~~dg~~l~sgs~D 535 (686)
+..|++|+.||.|++||.. +.+++.|-=..++|++..
T Consensus 309 ~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 309 GEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 7899999999999999964 346677776777777654
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-14 Score=156.74 Aligned_cols=316 Identities=16% Similarity=0.243 Sum_probs=217.6
Q ss_pred ceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCc
Q 005646 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPS 296 (686)
Q Consensus 217 ~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~ 296 (686)
.....+..+.+|...+..+... ....-..|...+++.++||+++++|+|..||.|.+|.--..+. .
T Consensus 175 ~~i~~~~~~~~~~v~~~~~~~~---~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~--------~--- 240 (792)
T KOG1963|consen 175 KGIVHMCKIHIYFVPKHTKHTS---SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD--------D--- 240 (792)
T ss_pred EEEEEeeeEEEEEecccceeec---cchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc--------c---
Confidence 3344566688888766442111 1112235788899999999999999999999999997432110 0
Q ss_pred ceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCC
Q 005646 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDK 375 (686)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg 375 (686)
....+.++-|...|++++|+++| +|+||+..+
T Consensus 241 -----------------------------------------------~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~ 273 (792)
T KOG1963|consen 241 -----------------------------------------------SETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG 273 (792)
T ss_pred -----------------------------------------------cccceEEEecccccceeEEecCCceEeecccce
Confidence 01235566799999999999999 999999999
Q ss_pred cEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec------------cCCcEEEE
Q 005646 376 TVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD------------IRQIVTAV 442 (686)
Q Consensus 376 ~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~------------~~~~V~~v 442 (686)
.+.+|.+.+++ .+.++ -.++|..+.++| ++++.+....|..|.+....+......+. ...-.+.+
T Consensus 274 VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~ 351 (792)
T KOG1963|consen 274 VLVLWQLETGK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGV 351 (792)
T ss_pred EEEEEeecCCC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeE
Confidence 99999999999 33444 889999999999 99999999999999999886654332211 23446889
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccC---CCCCeEEEEEeCCCCCeEEEEe--------CC--C
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA---PCKRITGFQFLPQDSSKVMVSC--------AD--S 509 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~I~~l~fsp~~~~~l~~~s--------~D--~ 509 (686)
+++|.-+.++..+..|.|.+||+.+.......++..+..... +...++.++.+. .+.++++.- .| -
T Consensus 352 ~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~ 430 (792)
T KOG1963|consen 352 SIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEV 430 (792)
T ss_pred EEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceE
Confidence 999977788888899999999999888877666665543322 234567777777 477777753 23 3
Q ss_pred cEEEEeCCc--------------------ceeE-cC-CCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCc
Q 005646 510 QVRILQGPN--------------------VIGK-YK-DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNA 567 (686)
Q Consensus 510 ~I~iwd~~~--------------------~~~~-~~-dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (686)
.+++|.... ..++ .+ .....+|++.||.++||-+.+.+...+ ....++|..
T Consensus 431 ~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k--~~s~W~c~~----- 503 (792)
T KOG1963|consen 431 SLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYK--KSSNWTCKA----- 503 (792)
T ss_pred EEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCc--CccceEEee-----
Confidence 567785321 0112 22 223899999999999999977552111 111222211
Q ss_pred EEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCc
Q 005646 568 SIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEK 627 (686)
Q Consensus 568 ~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~ 627 (686)
+..+...+...++|+.|| .+++.+.+.++.+|+-.+
T Consensus 504 -------------------i~sy~k~~i~a~~fs~dG-----slla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 504 -------------------IGSYHKTPITALCFSQDG-----SLLAVSFDDTITIWDYDT 539 (792)
T ss_pred -------------------eeccccCcccchhhcCCC-----cEEEEecCCEEEEecCCC
Confidence 111233345567788885 334467888888888444
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-15 Score=142.41 Aligned_cols=235 Identities=19% Similarity=0.233 Sum_probs=166.7
Q ss_pred ceEEEEEcCCcccc--ccccccCceec-ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee-eeeeccCCCCCcce
Q 005646 223 QRVKVYHCKKRSKE--LSALYKGQEIQ-AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER-LTEVDIPEIDPSCI 298 (686)
Q Consensus 223 ~~v~vw~~~~~~~~--~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~-~~~~~~~~~~~~~~ 298 (686)
..+.||.+...... ..++.....|. .|-+.|.|+.|.|++..||+-. |..|.+|++..+.. ..++....
T Consensus 93 ~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~------ 165 (370)
T KOG1007|consen 93 TGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE------ 165 (370)
T ss_pred eeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccc------
Confidence 35779988654322 22233333343 5667999999999999999876 78999999988764 22221110
Q ss_pred EEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC--CEEEEEECCCc
Q 005646 299 YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--NYLLSASIDKT 376 (686)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~~L~s~s~Dg~ 376 (686)
-.+|....++-+|+|. +..+....|++
T Consensus 166 ---------------------------------------------------s~e~~~~ftsg~WspHHdgnqv~tt~d~t 194 (370)
T KOG1007|consen 166 ---------------------------------------------------SAEMRHSFTSGAWSPHHDGNQVATTSDST 194 (370)
T ss_pred ---------------------------------------------------cccccceecccccCCCCccceEEEeCCCc
Confidence 0125566778889984 45555566999
Q ss_pred EEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--EEEEeccCCcEEEEEEcc-CCCEE
Q 005646 377 VRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWVDIRQIVTAVCYRP-DGQGG 451 (686)
Q Consensus 377 V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~~~~V~~v~~sp-dg~~l 451 (686)
++.||+++.++...+. |...|..+.|+|....+|++|+.||.|||||.+..+ +....+|...|.+|.|+| ..+++
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 9999999999988887 999999999999667789999999999999998654 446778899999999999 45788
Q ss_pred EEEecCCcEEEEeCCCCeeeee---------------------eeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCc
Q 005646 452 IVGSMMGDCRFYNVSDNHLELD---------------------AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (686)
Q Consensus 452 ~~gs~dg~i~iwd~~~~~~~~~---------------------~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~ 510 (686)
++|+.|..|.+|....-.-... .+-........|...|++++|+..++-++++-+.||+
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGR 354 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGR 354 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCce
Confidence 9999999999998642210000 0000011234577889999999876666666666666
Q ss_pred EEEEe
Q 005646 511 VRILQ 515 (686)
Q Consensus 511 I~iwd 515 (686)
+-|=.
T Consensus 355 viIs~ 359 (370)
T KOG1007|consen 355 VIISS 359 (370)
T ss_pred EEeec
Confidence 55533
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-15 Score=144.07 Aligned_cols=226 Identities=12% Similarity=0.206 Sum_probs=168.7
Q ss_pred eeccceEEEEEcCCc--cccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCC
Q 005646 219 CSKVQRVKVYHCKKR--SKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDP 295 (686)
Q Consensus 219 g~~d~~v~vw~~~~~--~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~ 295 (686)
++.+..+++|.+... ..+.........-..|..++++..|+. +.++|.|.+-|-+..|||++++..
T Consensus 117 ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~----------- 185 (364)
T KOG0290|consen 117 ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS----------- 185 (364)
T ss_pred hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-----------
Confidence 455667999998743 222223333333445778999999987 788999999999999999988631
Q ss_pred cceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEEC
Q 005646 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASI 373 (686)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~ 373 (686)
......+-+|..+|.+++|...+ .+++.+.
T Consensus 186 ------------------------------------------------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvga 217 (364)
T KOG0290|consen 186 ------------------------------------------------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGA 217 (364)
T ss_pred ------------------------------------------------cceeeEEEecCcceeEEEeccCccceEEEecC
Confidence 01224456799999999999976 9999999
Q ss_pred CCcEEEEECCCCeeeeEee----CCCCeEEEEEeecCCCEEEEEEcC-CcEEEEecCCCc--EEEEeccCCcEEEEEEcc
Q 005646 374 DKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCH--VVDWVDIRQIVTAVCYRP 446 (686)
Q Consensus 374 Dg~V~iWd~~~~~~~~~~~----h~~~V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~--~~~~~~~~~~V~~v~~sp 446 (686)
||.||++|++...-...+- ...+...++|++.+.+++++-..| ..|.|.|++... +..+.+|...|++++|.|
T Consensus 218 DGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaP 297 (364)
T KOG0290|consen 218 DGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAP 297 (364)
T ss_pred CCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecC
Confidence 9999999998765433332 256889999999999999997766 569999998654 457889999999999999
Q ss_pred C-CCEEEEEecCCcEEEEeCCCCee-eeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 447 D-GQGGIVGSMMGDCRFYNVSDNHL-ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 447 d-g~~l~~gs~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
. ...|++++.|..+.+||+..... .....+. .......|+.++|++..+..++++..
T Consensus 298 hS~~hictaGDD~qaliWDl~q~~~~~~~dPil----ay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 298 HSSSHICTAGDDCQALIWDLQQMPRENGEDPIL----AYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred CCCceeeecCCcceEEEEecccccccCCCCchh----hhhccceeeeeeecccCCCEEEEEec
Confidence 4 56889999999999999975432 1111111 11244679999999976666666544
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-14 Score=161.00 Aligned_cols=275 Identities=14% Similarity=0.198 Sum_probs=178.9
Q ss_pred ceeeecccCcceee---ecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCC
Q 005646 196 LACVVDKQGEGERV---RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG 272 (686)
Q Consensus 196 ~~~~~~~~~~~~~~---s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 272 (686)
++.+..|...+.+. +.++.++++|+.||+||||+..+...+........++.--.+.+.++.+.+.++.+|.++.||
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 44555666655443 345578999999999999999876655443444445554578899999999999999999999
Q ss_pred cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc
Q 005646 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (686)
Q Consensus 273 ~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (686)
.|++.++......+.. ..+. .+...+
T Consensus 1121 ~v~~~~id~~~~~~~~------~~~~-----------------------------------------------ri~n~~- 1146 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRV------ATQV-----------------------------------------------RIPNLK- 1146 (1431)
T ss_pred eEEEEEccccccccce------eeee-----------------------------------------------eccccc-
Confidence 9999998653100000 0000 000001
Q ss_pred CCCCeeEE-EeeCC--C-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 353 HSGEILDL-SWSKN--N-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 353 h~~~V~~l-~~s~~--~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
..+.+.+| ++... . .|+.+..-+.|..||++.......++ ..+.|++++.+| .++++++|...|.+.+||++
T Consensus 1147 ~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1147 KDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred CCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEee
Confidence 11222222 22221 2 67788888999999999988777766 458999999999 89999999999999999999
Q ss_pred CCcEEEEe--ccCCcEEEEEEccCC---CEEEEE-e-cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEE-eCC
Q 005646 426 SCHVVDWV--DIRQIVTAVCYRPDG---QGGIVG-S-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF-LPQ 497 (686)
Q Consensus 426 ~~~~~~~~--~~~~~V~~v~~spdg---~~l~~g-s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~f-sp~ 497 (686)
-+..+... .+..+++.++.+|-. ...+++ + ..+.|.+|++.++..+...-.. ..+..+.+ .|.
T Consensus 1226 F~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s---------~~~p~ls~~~Ps 1296 (1431)
T KOG1240|consen 1226 FRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS---------DGAPILSYALPS 1296 (1431)
T ss_pred cCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC---------CCCcchhhhccc
Confidence 88777433 345778888888733 344444 3 4778999999988654422111 01111111 110
Q ss_pred C----CCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 498 D----SSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 498 ~----~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+ +..+. +. ..++-.-+.++.+|+.|..|+.||...++
T Consensus 1297 ~~~~kp~~~~-~~------------~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1297 NDARKPDSLA-GI------------SCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ccCCCCCccc-ce------------eeecccCCceeeecCCccceeeccCCCcc
Confidence 0 00000 00 00111156788999999999999998866
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.1e-16 Score=153.83 Aligned_cols=193 Identities=23% Similarity=0.352 Sum_probs=147.1
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEE
Q 005646 254 LTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACV 333 (686)
Q Consensus 254 ~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (686)
.+++|+++|..|+||+.||++|||++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-------------------------------------------------- 177 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-------------------------------------------------- 177 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch--------------------------------------------------
Confidence 789999999999999999999999976543
Q ss_pred EeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCC--
Q 005646 334 VFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDD-- 407 (686)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~-- 407 (686)
.+.....|.++|.+|.|+||+ .|++-+.| ..+||+++++.++.... ..-....+.|+. ++
T Consensus 178 ------------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~ 243 (398)
T KOG0771|consen 178 ------------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQ 243 (398)
T ss_pred ------------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCC
Confidence 233445689999999999999 99999999 99999999997776655 334456677776 54
Q ss_pred -CEEE--EEEcCCcEEEEecCCCc---E---EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 408 -NYFI--SGSIDGKVRIWAVLSCH---V---VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 408 -~~l~--sgs~Dg~V~iwd~~~~~---~---~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
.+++ .-..-+.|+.||+.... . .........|++++.++||++++.|+.||.|-||+..+.+..
T Consensus 244 ~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~------- 316 (398)
T KOG0771|consen 244 ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL------- 316 (398)
T ss_pred ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeee-------
Confidence 3333 33344667777764321 1 123334567999999999999999999999999999765543
Q ss_pred eccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+-.+++|..-|+++.|+| |.+++++.+.|..+.|-.+.-
T Consensus 317 ~~vk~aH~~~VT~ltF~P----------------------------dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 317 QYVKEAHLGFVTGLTFSP----------------------------DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EeehhhheeeeeeEEEcC----------------------------CcCcccccccCCceeEEEEee
Confidence 233677888999999999 666777777777777766654
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-15 Score=140.58 Aligned_cols=230 Identities=18% Similarity=0.287 Sum_probs=166.9
Q ss_pred ccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCC-------CcEEEEEeecCeeeeeeccCC
Q 005646 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDD-------GVVRLWQVVEDERLTEVDIPE 292 (686)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~D-------g~I~vWd~~~~~~~~~~~~~~ 292 (686)
.++.|.+-++......+ ....|..|.+.|+.|+-+| +.+.|+|+-.| ..+.||.+..........
T Consensus 38 ~dNqVhll~~d~e~s~l----~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~--- 110 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSEL----LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSS--- 110 (370)
T ss_pred CcceeEEEEecCccchh----hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccc---
Confidence 45778888776544333 2456778999999999999 55667776432 236678775433110000
Q ss_pred CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEec-cCCCCeeEEEeeCCC-EEEE
Q 005646 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH-GHSGEILDLSWSKNN-YLLS 370 (686)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~-~L~s 370 (686)
.-..+..+. .+-+.|.|+.|.|++ .|++
T Consensus 111 --------------------------------------------------tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 111 --------------------------------------------------TLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred --------------------------------------------------hhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 001222232 455699999999998 7766
Q ss_pred EECCCcEEEEECCCCee-eeEee------CCCCeEEEEEee-cCCCEEEEEEcCCcEEEEecCCCcEEEEe--ccCCcEE
Q 005646 371 ASIDKTVRLWRVGNDHC-LRVFP------HSNYVTCVHFNP-VDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVT 440 (686)
Q Consensus 371 ~s~Dg~V~iWd~~~~~~-~~~~~------h~~~V~~v~fsp-~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~V~ 440 (686)
-. |..|.+|++..+.. +..+. +....++-+|+| .+++.+++.+ |++++.||+++......+ .|...|.
T Consensus 141 m~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vr 218 (370)
T KOG1007|consen 141 MD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVR 218 (370)
T ss_pred ec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceee
Confidence 65 89999999987765 33332 567889999999 5677777765 899999999987765332 4677899
Q ss_pred EEEEccCCC-EEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 441 AVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 441 ~v~~spdg~-~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
.+.|+|+-+ +|++++.||.|+|||++..+.... ....|...|.++.|+|....++++++.|..|.+|..
T Consensus 219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~-------el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ-------ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred eccCCCCceEEEEEcCCCccEEEEeccCCCcccc-------ccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 999999876 567788999999999987654321 245678899999999988899999999999999963
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-16 Score=158.25 Aligned_cols=239 Identities=20% Similarity=0.333 Sum_probs=164.7
Q ss_pred cccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccce
Q 005646 240 LYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKIS 319 (686)
Q Consensus 240 ~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (686)
+-..++|.||++.|+|+.|+.+|.+||+|+.|-.+.|||.-..+.
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl----------------------------------- 84 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL----------------------------------- 84 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce-----------------------------------
Confidence 344578999999999999999999999999999999999875543
Q ss_pred eEEEeeccCCceEEEeCCccccccCCCeEEe-ccCCCCeeEEEeeCCC---EEEEEECCCcEEEEECCC----------C
Q 005646 320 ILKSLRRTSESACVVFPPKVFRILEKPLHEF-HGHSGEILDLSWSKNN---YLLSASIDKTVRLWRVGN----------D 385 (686)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~----------~ 385 (686)
++.+ .||...|.++.|-|.. ++++|+.|+.|+++|+.. .
T Consensus 85 ---------------------------lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~ 137 (758)
T KOG1310|consen 85 ---------------------------LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGME 137 (758)
T ss_pred ---------------------------eeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCcc
Confidence 3333 4899999999999853 899999999999999984 2
Q ss_pred eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-----------EEeccCCcEEEEEEcc-CCCEEE
Q 005646 386 HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-----------DWVDIRQIVTAVCYRP-DGQGGI 452 (686)
Q Consensus 386 ~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-----------~~~~~~~~V~~v~~sp-dg~~l~ 452 (686)
.....+. |...|..|+-.|...+.|.+++.||+||-+|++....- .....--...++.++| +..+|+
T Consensus 138 ~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~la 217 (758)
T KOG1310|consen 138 ETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLA 217 (758)
T ss_pred chhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEE
Confidence 3444455 99999999999955699999999999999999874211 1111123467889999 456899
Q ss_pred EEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE-EeCCCCCeEEEEeCCCcEE-EEeCCcceeEcCCCCEEE
Q 005646 453 VGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ-FLPQDSSKVMVSCADSQVR-ILQGPNVIGKYKDGKHIV 530 (686)
Q Consensus 453 ~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~-fsp~~~~~l~~~s~D~~I~-iwd~~~~~~~~~dg~~l~ 530 (686)
+|+.|-..++||.+.......... .....+.....+++ |+|. . + ...++.+. ..-..+.+.|+|+|.-|+
T Consensus 218 VGgsdpfarLYD~Rr~lks~~s~~---~~~~~pp~~~~cv~yf~p~-h--l--kn~~gn~~~~~~~~t~vtfnpNGtElL 289 (758)
T KOG1310|consen 218 VGGSDPFARLYDRRRVLKSFRSDG---TMNTCPPKDCRCVRYFSPG-H--L--KNSQGNLDRYITCCTYVTFNPNGTELL 289 (758)
T ss_pred ecCCCchhhhhhhhhhccCCCCCc---cccCCCCcccchhheecCc-c--c--cCcccccccceeeeEEEEECCCCcEEE
Confidence 999999999999643221110000 00011111222332 4441 1 1 22233222 222345677888886665
Q ss_pred EEeCCCcEEEEeCCCCCC
Q 005646 531 SAGEDSNVYMWNCIGHEE 548 (686)
Q Consensus 531 sgs~Dg~V~iWd~~~~~~ 548 (686)
..-.--.||++|++.++.
T Consensus 290 vs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 290 VSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred EeeCCeEEEEEeecCCCC
Confidence 544445788888887663
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-13 Score=148.26 Aligned_cols=251 Identities=27% Similarity=0.474 Sum_probs=190.3
Q ss_pred eeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC-CCcEEEEEeecCeeeeeeccCCCCCcc
Q 005646 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVEDERLTEVDIPEIDPSC 297 (686)
Q Consensus 219 g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~vWd~~~~~~~~~~~~~~~~~~~ 297 (686)
...++.+.+|+.... ......+..|...|..++|+|++.++++++. |+.+++|++..+.
T Consensus 130 ~~~d~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 189 (466)
T COG2319 130 SSLDGTVKLWDLSTP------GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-------------- 189 (466)
T ss_pred CCCCccEEEEEecCC------CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc--------------
Confidence 344899999987651 1123457789999999999999999999986 9999999997633
Q ss_pred eEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCC
Q 005646 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDK 375 (686)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg 375 (686)
.+..+.+|...|.+++|+|++ .+++++.|+
T Consensus 190 ------------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 221 (466)
T COG2319 190 ------------------------------------------------PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG 221 (466)
T ss_pred ------------------------------------------------eEEeeccCCCceEEEEEcCCcceEEEEecCCC
Confidence 345556699999999999988 444459999
Q ss_pred cEEEEECCCCeeee-Eee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE-E-EEeccCCcEEEEEEccCCCEE
Q 005646 376 TVRLWRVGNDHCLR-VFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-V-DWVDIRQIVTAVCYRPDGQGG 451 (686)
Q Consensus 376 ~V~iWd~~~~~~~~-~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~-~-~~~~~~~~V~~v~~spdg~~l 451 (686)
+|++||...+..+. .+. |...+ ...|+| ++.++++++.|+.+++|++..... + ....|...+.++.|.|++..+
T Consensus 222 ~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 222 TIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred cEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence 99999999888777 455 77765 448999 778999999999999999987664 3 334678899999999999999
Q ss_pred EEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE-eCCCcEEEEeCCcc-----------
Q 005646 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CADSQVRILQGPNV----------- 519 (686)
Q Consensus 452 ~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~-s~D~~I~iwd~~~~----------- 519 (686)
++++.|+.+.+||+.......... ...|...+..+.| +.+...++.+ ..|+.+++|+....
T Consensus 300 ~~~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 372 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKLLSSLT------LKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN 372 (466)
T ss_pred EEeeCCCcEEEEEcCCCceEEEee------ecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce
Confidence 889999999999887766443222 2344457999999 5343555555 68889999986532
Q ss_pred ---eeEcCCCCEEEE-EeCCCcEEEEeCCCCC
Q 005646 520 ---IGKYKDGKHIVS-AGEDSNVYMWNCIGHE 547 (686)
Q Consensus 520 ---~~~~~dg~~l~s-gs~Dg~V~iWd~~~~~ 547 (686)
+.+.+ ...++. +..++.+.+|+.....
T Consensus 373 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 403 (466)
T COG2319 373 VLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGS 403 (466)
T ss_pred EEEEEECC-CCCEEEEecCCCceEEEecccCe
Confidence 23333 223333 6788999999988765
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-15 Score=144.59 Aligned_cols=275 Identities=12% Similarity=0.133 Sum_probs=196.4
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCcee--cccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEI--QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l--~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
...|+.++.+|++|+.|..++||++..... .+..+.-.+ ..|...|.|++|....++|++|+.+++|.+.|+.+.+
T Consensus 61 AlqFS~N~~~L~SGGDD~~~~~W~~de~~~--~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~q 138 (609)
T KOG4227|consen 61 ALQFSHNDRFLASGGDDMHGRVWNVDELMV--RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQ 138 (609)
T ss_pred eeeeccCCeEEeecCCcceeeeechHHHHh--hcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccce
Confidence 345778889999999999999998754211 111111112 2466899999999999999999999999999999877
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
.+..+.. ....+.|..|..+
T Consensus 139 si~V~~~------------------------------------------------------------~~~~~~VY~m~~~ 158 (609)
T KOG4227|consen 139 SIYVANE------------------------------------------------------------NNNRGDVYHMDQH 158 (609)
T ss_pred eeeeecc------------------------------------------------------------cCcccceeecccC
Confidence 4332210 1244689999999
Q ss_pred CCC-EEEEEECCCcEEEEECCCCe-ee---eEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE--E---Ee
Q 005646 364 KNN-YLLSASIDKTVRLWRVGNDH-CL---RVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--D---WV 433 (686)
Q Consensus 364 ~~~-~L~s~s~Dg~V~iWd~~~~~-~~---~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~--~---~~ 433 (686)
|.. .|++.+.+|.|.+||.+..+ .+ ..-........+.|+|....+|++.+..+-+.+||++..+-- . ..
T Consensus 159 P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~ 238 (609)
T KOG4227|consen 159 PTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFK 238 (609)
T ss_pred CCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccc
Confidence 977 99999999999999998665 22 222256778899999999999999999999999999875421 1 11
Q ss_pred ccCC---cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCc
Q 005646 434 DIRQ---IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (686)
Q Consensus 434 ~~~~---~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~ 510 (686)
.... .-..+.|+|.|+.+.+--....-.+||+....+.... ...........+.|.+++|.. ...+++|+.+-.
T Consensus 239 ~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k-~D~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~ 315 (609)
T KOG4227|consen 239 GLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK-SDHNPNGYCNIKTIKSMTFID--DYTVATGSDHWG 315 (609)
T ss_pred cCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe-ccCCCCcceeeeeeeeeeeec--ceeeeccCcccc
Confidence 2222 2367889999998887655555667787664432210 000000111235577888876 345999999999
Q ss_pred EEEEeCC--------------------------------------cceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 511 VRILQGP--------------------------------------NVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 511 I~iwd~~--------------------------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
|.+|.++ +.+.|++...+|++.+-...++||.--.
T Consensus 316 i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 316 IHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred eEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence 9999642 3467888889999999999999997543
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-14 Score=136.79 Aligned_cols=231 Identities=17% Similarity=0.285 Sum_probs=163.4
Q ss_pred cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCC-----CEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCc
Q 005646 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG-----QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPS 296 (686)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-----~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~ 296 (686)
.++|.|-.++....++... .. ..|.-+++.+.|.|+. .+|||.+. .+|+|.+...+.......
T Consensus 72 ~Nkvqiv~ld~~s~e~~~~---a~-fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~------ 139 (364)
T KOG0290|consen 72 NNKVQIVQLDEDSGELVED---AN-FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQS------ 139 (364)
T ss_pred CCeeEEEEEccCCCceecc---CC-CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhh------
Confidence 4677777776544433221 11 3589999999999975 46887764 799999874321111100
Q ss_pred ceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECC
Q 005646 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASID 374 (686)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~D 374 (686)
+. ....-..+.+++++..|+.-. +|.++|-|
T Consensus 140 -~L----------------------------------------------~~~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 140 -VL----------------------------------------------NNNKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred -hh----------------------------------------------ccCcccccCCcccccccccCCcceeEeeccc
Confidence 00 000112366799999998765 89999999
Q ss_pred CcEEEEECCCCee----eeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe---cc-CCcEEEEEEcc
Q 005646 375 KTVRLWRVGNDHC----LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV---DI-RQIVTAVCYRP 446 (686)
Q Consensus 375 g~V~iWd~~~~~~----~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~---~~-~~~V~~v~~sp 446 (686)
.|..|||++++.. .+.+.|...|..|+|.....+.|++.+.||.||+||++...--+.+ .. ..+...++|++
T Consensus 173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK 252 (364)
T ss_pred CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence 9999999999733 3344599999999999856789999999999999999976533222 22 56788899998
Q ss_pred -CCCEEEEEec-CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 447 -DGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 447 -dg~~l~~gs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
|-+++|+-.. ...|.|.|++..... ......|...|++++|.|.....+++++.|.++.+||+..
T Consensus 253 qDpnymATf~~dS~~V~iLDiR~P~tp-------va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 253 QDPNYMATFAMDSNKVVILDIRVPCTP-------VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCchHHhhhhcCCceEEEEEecCCCcc-------eehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 5567776444 456999999765432 1235668899999999998777777777777777777543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.5e-13 Score=143.34 Aligned_cols=277 Identities=23% Similarity=0.410 Sum_probs=193.4
Q ss_pred eecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe-eeeeeccCCC-CCcceEEeecCCCCceeeeeccccceeEE
Q 005646 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE-RLTEVDIPEI-DPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+..|...|.++.|.+.+..++.++.|+.+.+|+...+. .+..+..... ....+... .... . ...
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~-~~~ 126 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDG-----------N-SIL 126 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCc-----------c-eEE
Confidence 456799999999999999999999999999999998876 4444443221 11111111 1111 1 001
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC-CCcEEEEECCCCeeeeEee-CCCCeEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-DKTVRLWRVGNDHCLRVFP-HSNYVTC 399 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~-Dg~V~iWd~~~~~~~~~~~-h~~~V~~ 399 (686)
......+..+.+|+... .......+..|...|..++|+|++ .+++++. |+.+++|++..+..+..+. |...|.+
T Consensus 127 ~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 127 LASSSLDGTVKLWDLST---PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203 (466)
T ss_pred eccCCCCccEEEEEecC---CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEE
Confidence 11111122222222221 124567788999999999999999 7888885 9999999999988888887 8999999
Q ss_pred EEEeecCCC-EEEEEEcCCcEEEEecCCCcEEE--EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeE
Q 005646 400 VHFNPVDDN-YFISGSIDGKVRIWAVLSCHVVD--WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (686)
Q Consensus 400 v~fsp~~~~-~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~ 476 (686)
++|+| ++. ++++++.|+.|++||...+.... ...|.... ...|+|++..+++++.|+.+++|++.......
T Consensus 204 ~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---- 277 (466)
T COG2319 204 LAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLL---- 277 (466)
T ss_pred EEEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEE----
Confidence 99998 776 56666999999999999777765 44555554 33899999999999999999999998655411
Q ss_pred EeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-----------------eeEcCCCCEEEEE-eCCCcE
Q 005646 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-----------------IGKYKDGKHIVSA-GEDSNV 538 (686)
Q Consensus 477 ~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~-----------------~~~~~dg~~l~sg-s~Dg~V 538 (686)
... ..|...|.++.|.| ++..+++++.|+.+++|+..+. +.+.+++..++.+ ..|+.+
T Consensus 278 ~~~---~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 278 RTL---SGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353 (466)
T ss_pred EEE---ecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcE
Confidence 111 34568899999999 6677777888888999975432 2221222445554 577788
Q ss_pred EEEeCCCCC
Q 005646 539 YMWNCIGHE 547 (686)
Q Consensus 539 ~iWd~~~~~ 547 (686)
++|++....
T Consensus 354 ~~~~~~~~~ 362 (466)
T COG2319 354 RLWDLRTGK 362 (466)
T ss_pred EeeecCCCc
Confidence 888877643
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.8e-14 Score=129.34 Aligned_cols=198 Identities=16% Similarity=0.280 Sum_probs=153.2
Q ss_pred cccCcceeeecCCCccceeeccceEEEEEcCCccc-----cccccccCcee-cccCCceEEEEEeeCCCEEEEEeCCCcE
Q 005646 201 DKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSK-----ELSALYKGQEI-QAHDGSILTMKFSPDGQYLASAGDDGVV 274 (686)
Q Consensus 201 ~~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~-----~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~I 274 (686)
.|++.+..+.+.+++|++++. |.|+-|.+....+ ++..+...+.. .----.|++|-..|..+-|++++.|+.+
T Consensus 60 ahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~ 138 (325)
T KOG0649|consen 60 AHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVI 138 (325)
T ss_pred ccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEE
Confidence 467778888888888888775 9999998864322 22222211111 0112368999999988888888899999
Q ss_pred EEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC
Q 005646 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (686)
Q Consensus 275 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 354 (686)
+-||+++|+ ..++++||+
T Consensus 139 y~~dlE~G~--------------------------------------------------------------i~r~~rGHt 156 (325)
T KOG0649|consen 139 YQVDLEDGR--------------------------------------------------------------IQREYRGHT 156 (325)
T ss_pred EEEEecCCE--------------------------------------------------------------EEEEEcCCc
Confidence 999999986 346778999
Q ss_pred CCeeEEEe-eCCCEEEEEECCCcEEEEECCCCeeeeEee---C--------CCCeEEEEEeecCCCEEEEEEcCCcEEEE
Q 005646 355 GEILDLSW-SKNNYLLSASIDKTVRLWRVGNDHCLRVFP---H--------SNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (686)
Q Consensus 355 ~~V~~l~~-s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~---h--------~~~V~~v~fsp~~~~~l~sgs~Dg~V~iw 422 (686)
+.|.++.- +.++.+++|+.||++||||.++++++..+. | ...|-+++- +..++++|+ ...+.+|
T Consensus 157 DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-Gp~lslw 232 (325)
T KOG0649|consen 157 DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-GPKLSLW 232 (325)
T ss_pred ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-CCceeEE
Confidence 99999987 445599999999999999999999998875 2 234666665 567887776 5689999
Q ss_pred ecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 423 AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 423 d~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
.++..+....+..+..+..+.|-.| .+++++..+.|.-|.+..
T Consensus 233 hLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 233 HLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 9999999999999999999999665 677787888899998753
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8e-15 Score=148.61 Aligned_cols=289 Identities=18% Similarity=0.213 Sum_probs=199.2
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeecc-CCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI-PEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
..|..|.+.|..+.|+..|..|+|||.|..|.+||+..+.....+.. +...+....|.+..... ..+.-..++.....
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~-ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDR-TIVTSSRDGQVRVS 214 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCc-CceeccccCceeee
Confidence 34778999999999999999999999999999999998876655542 22222222222222111 11111112221111
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee----CCC-
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP----HSN- 395 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~----h~~- 395 (686)
.+..+.. ......+..|.+.|.-++.-|+. .|++++.|+.+.-.|++++.+-..+. +..
T Consensus 215 ~i~~t~~--------------~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 215 EILETGY--------------VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred eeccccc--------------eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 1111100 01234456799999999999987 89999999999999999886554443 344
Q ss_pred --CeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-------EEe------ccCCcEEEEEEccCCCEEEEEecCCcE
Q 005646 396 --YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-------DWV------DIRQIVTAVCYRPDGQGGIVGSMMGDC 460 (686)
Q Consensus 396 --~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-------~~~------~~~~~V~~v~~spdg~~l~~gs~dg~i 460 (686)
....|+.+|.+.++|++|+.|..+|+||.+.-... .+. ...-.|++++|+.++.-++++..|-.|
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I 360 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI 360 (559)
T ss_pred ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce
Confidence 67899999988889999999999999999753211 111 234569999999999899999999999
Q ss_pred EEEeCCCCee---eeee--eEEeeccccCC--CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC---------------Cc
Q 005646 461 RFYNVSDNHL---ELDA--EICVHSKKKAP--CKRITGFQFLPQDSSKVMVSCADSQVRILQG---------------PN 518 (686)
Q Consensus 461 ~iwd~~~~~~---~~~~--~~~~~~~~~~~--~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~---------------~~ 518 (686)
++|.-..+.- .... ........++| ...|.++.|--....++++|+.-|.|.||+- ++
T Consensus 361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVN 440 (559)
T KOG1334|consen 361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVN 440 (559)
T ss_pred EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEe
Confidence 9995432221 0000 00111112333 3458888887557889999999999999983 45
Q ss_pred ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 519 VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 ~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++.-+|--..|||.|-|..|+||...+.+
T Consensus 441 CLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 441 CLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ccCCCCCCchhhccCCccceeeecCCccc
Confidence 67778888999999999999999986654
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.2e-14 Score=152.00 Aligned_cols=255 Identities=19% Similarity=0.214 Sum_probs=168.7
Q ss_pred cccCccee--ee-cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCC--CEEEEEeCCCcEE
Q 005646 201 DKQGEGER--VR-LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG--QYLASAGDDGVVR 275 (686)
Q Consensus 201 ~~~~~~~~--~s-~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg--~~Lasgs~Dg~I~ 275 (686)
..+.++.+ |+ .+++.++.|..+|+|.+||..+........ .......|..+|+.+.|..+- .-+++++.||.|.
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-cccccccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 34444444 44 355788999999999999998765532111 122345699999999997753 4499999999999
Q ss_pred EEEeecCeeeeeeccCCC------------CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCcccccc
Q 005646 276 LWQVVEDERLTEVDIPEI------------DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL 343 (686)
Q Consensus 276 vWd~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (686)
.|+++.-....+....+. ...++.|.+. ......++.+.+......+++...... ..
T Consensus 319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~---~p~~FiVGTe~G~v~~~~r~g~~~~~~--------~~ 387 (555)
T KOG1587|consen 319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT---DPNHFIVGTEEGKVYKGCRKGYTPAPE--------VS 387 (555)
T ss_pred eeeccccccchhhcccccccccccccccccceeeEeeccC---CCceEEEEcCCcEEEEEeccCCccccc--------cc
Confidence 998765433221111111 1111111111 111222222333333322222221110 11
Q ss_pred CCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECC-CCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcE
Q 005646 344 EKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVG-NDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKV 419 (686)
Q Consensus 344 ~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~-~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V 419 (686)
-+++..+..|.+.|.++.++|=+ .+++++ |-+|+||... ...++..+. +..+|++++|+|.....|+++..||.|
T Consensus 388 ~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l 466 (555)
T KOG1587|consen 388 YKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNL 466 (555)
T ss_pred ccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCce
Confidence 14455677899999999999987 455555 9999999987 566666665 788899999999888999999999999
Q ss_pred EEEecCCCcE---EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCC
Q 005646 420 RIWAVLSCHV---VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 420 ~iwd~~~~~~---~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~ 468 (686)
.|||+..... ....-.....+.+.|+++|+.|++|...|++++|++...
T Consensus 467 ~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 467 DIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 9999976432 222223556778889999999999999999999999643
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=144.25 Aligned_cols=167 Identities=23% Similarity=0.369 Sum_probs=136.2
Q ss_pred CCceEEEEEeeCCC-EEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 250 DGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 250 ~~~I~~l~fspdg~-~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
..+|..+.|.++.. .|||||.|..|+||.+..+..-. +...+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~------------------------------~~~~V------- 55 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG------------------------------GDMKV------- 55 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCC------------------------------CceeE-------
Confidence 45899999999766 99999999999999998765110 00000
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECC--------C-----C---eeeeEe
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG--------N-----D---HCLRVF 391 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~--------~-----~---~~~~~~ 391 (686)
..+..+..|...|+++.|+|+| +|+||+.+|.|.+|... + . ...+.+
T Consensus 56 ----------------~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~l 119 (434)
T KOG1009|consen 56 ----------------EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVL 119 (434)
T ss_pred ----------------EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEe
Confidence 2345667899999999999999 99999999999999876 2 1 122333
Q ss_pred e-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe
Q 005646 392 P-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 392 ~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
. |...|..++|+| +++++++++.|..+++||+..+++.. ..+|...+..++|.|-++++++-+.|...+.+.+...+
T Consensus 120 r~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 120 RGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred cccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeee
Confidence 3 899999999999 99999999999999999999999884 55688899999999999999999999988888775444
Q ss_pred e
Q 005646 470 L 470 (686)
Q Consensus 470 ~ 470 (686)
.
T Consensus 199 ~ 199 (434)
T KOG1009|consen 199 V 199 (434)
T ss_pred e
Confidence 3
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.1e-14 Score=134.32 Aligned_cols=208 Identities=18% Similarity=0.296 Sum_probs=159.5
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
-..+|+|.+|++|+..+|.+-....|.||.....+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-------------------------------------------- 44 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-------------------------------------------- 44 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------------------------------------
Confidence 457999999999999999999999999998765441
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECC-CCee---eeEeeCCCCeEEEEEe
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG-NDHC---LRVFPHSNYVTCVHFN 403 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~-~~~~---~~~~~h~~~V~~v~fs 403 (686)
-++.+++..|...|+.+.|+|.. .|++++.|..-++|... .++- +..+.++..++||.|+
T Consensus 45 ---------------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws 109 (361)
T KOG1523|consen 45 ---------------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWS 109 (361)
T ss_pred ---------------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeec
Confidence 13678889999999999999988 99999999999999984 4433 3334599999999999
Q ss_pred ecCCCEEEEEEcCCcEEEEecCCCcEE-----EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeee------
Q 005646 404 PVDDNYFISGSIDGKVRIWAVLSCHVV-----DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLEL------ 472 (686)
Q Consensus 404 p~~~~~l~sgs~Dg~V~iwd~~~~~~~-----~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~------ 472 (686)
| .++.|++|+.-..|.||-.+...-- ....++..|+++.|+|++-++++|+.|+.+|+|..--.....
T Consensus 110 P-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~p 188 (361)
T KOG1523|consen 110 P-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTP 188 (361)
T ss_pred C-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCC
Confidence 9 9999999999999999988765422 233467789999999999999999999999999853111100
Q ss_pred -eeeEEe---eccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 473 -DAEICV---HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 473 -~~~~~~---~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
...+.+ ........+.|.++.|+| .+..|+-.+.|+.+.+-|..
T Consensus 189 Wgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 189 WGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred CccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEeecC
Confidence 000000 000114567889999999 66777777777777766643
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-13 Score=149.62 Aligned_cols=211 Identities=15% Similarity=0.147 Sum_probs=144.1
Q ss_pred ccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC---CcEEEEEeecCeeeeeeccCCCCCcc
Q 005646 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSC 297 (686)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~vWd~~~~~~~~~~~~~~~~~~~ 297 (686)
.+..|.|||.+.... +.+..|...+...+|+|||++|+.++.+ ..|++||+.+++..
T Consensus 182 ~~~~i~i~d~dg~~~--------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~------------ 241 (429)
T PRK01742 182 QPYEVRVADYDGFNQ--------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK------------ 241 (429)
T ss_pred ceEEEEEECCCCCCc--------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE------------
Confidence 357899998765432 4466788899999999999999988754 36999999776421
Q ss_pred eEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEE-ECCC
Q 005646 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA-SIDK 375 (686)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~-s~Dg 375 (686)
.+..+.+|. ..++|+|+| .|+.+ +.++
T Consensus 242 ------------------------------------------------~l~~~~g~~---~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 242 ------------------------------------------------VVASFRGHN---GAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred ------------------------------------------------EEecCCCcc---CceeECCCCCEEEEEEecCC
Confidence 111222332 368999999 66665 4688
Q ss_pred cEEEE--ECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecCCC-cEEEEeccCCcEEEEEEccCCCEE
Q 005646 376 TVRLW--RVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSC-HVVDWVDIRQIVTAVCYRPDGQGG 451 (686)
Q Consensus 376 ~V~iW--d~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~~-~~~~~~~~~~~V~~v~~spdg~~l 451 (686)
.+.|| |+.++.......+...+...+|+| +++.|+..+ .+|..+||++... .......+.. ....|+|||+.|
T Consensus 271 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~i 347 (429)
T PRK01742 271 VLNIYVMGANGGTPSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTL 347 (429)
T ss_pred cEEEEEEECCCCCeEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEE
Confidence 76655 666666554444777788999999 888766555 5788888877532 2222233333 457899999999
Q ss_pred EEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEE
Q 005646 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVS 531 (686)
Q Consensus 452 ~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~s 531 (686)
++.+.++ +.+||+.++...... .. .....+.|+| ||++|+.
T Consensus 348 a~~~~~~-i~~~Dl~~g~~~~lt-----~~-----~~~~~~~~sP----------------------------dG~~i~~ 388 (429)
T PRK01742 348 VMINGDN-VVKQDLTSGSTEVLS-----ST-----FLDESPSISP----------------------------NGIMIIY 388 (429)
T ss_pred EEEcCCC-EEEEECCCCCeEEec-----CC-----CCCCCceECC----------------------------CCCEEEE
Confidence 8887754 666999877543210 00 0123455666 8999999
Q ss_pred EeCCCcEEEEeCC
Q 005646 532 AGEDSNVYMWNCI 544 (686)
Q Consensus 532 gs~Dg~V~iWd~~ 544 (686)
++.++.+++|.+.
T Consensus 389 ~s~~g~~~~l~~~ 401 (429)
T PRK01742 389 SSTQGLGKVLQLV 401 (429)
T ss_pred EEcCCCceEEEEE
Confidence 9989988888764
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-13 Score=132.58 Aligned_cols=201 Identities=14% Similarity=0.218 Sum_probs=161.8
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.+.++..+...+|++.....|.||...+... ....++++.|...|++++|+|..+.|+||+.|..-+||....+..
T Consensus 14 tchAwn~drt~iAv~~~~~evhiy~~~~~~~----w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSPNNHEVHIYSMLGADL----WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred eeeeecCCCceEEeccCCceEEEEEecCCCC----ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 3467788888999999999999998765441 234578899999999999999999999999999999998743321
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
-++...+..|....+++.|+|
T Consensus 90 -----------------------------------------------------------WkptlvLlRiNrAAt~V~WsP 110 (361)
T KOG1523|consen 90 -----------------------------------------------------------WKPTLVLLRINRAATCVKWSP 110 (361)
T ss_pred -----------------------------------------------------------eccceeEEEeccceeeEeecC
Confidence 135556667889999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeE-----eeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC------------
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRV-----FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS------------ 426 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~-----~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~------------ 426 (686)
.. .+++||.-+.|.||-++...--.+ ..+...|+++.|+| ++-+|++|+.|++.|++..--
T Consensus 111 ~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pW 189 (361)
T KOG1523|consen 111 KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPW 189 (361)
T ss_pred cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCC
Confidence 98 999999999999998876553322 22678899999999 999999999999999996521
Q ss_pred ------CcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe
Q 005646 427 ------CHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 427 ------~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
++++ .+....+.+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus 190 gsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 190 GSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 1222 122445679999999999999999999999999987654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-12 Score=127.54 Aligned_cols=154 Identities=16% Similarity=0.238 Sum_probs=119.2
Q ss_pred CCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee----CCCCeEEEEEeecCCCEEEEEE--cCCcEEEEecCC
Q 005646 353 HSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGS--IDGKVRIWAVLS 426 (686)
Q Consensus 353 h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~----h~~~V~~v~fsp~~~~~l~sgs--~Dg~V~iwd~~~ 426 (686)
....|.++.++.+. |+.+-.+. |.|||+.+.+.+.++. +...+.++.+++ .+.+++-=+ ..|.|.|||+.+
T Consensus 86 fpt~IL~VrmNr~R-LvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 86 FPTSILAVRMNRKR-LVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred cCCceEEEEEccce-EEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEccc
Confidence 34578888887664 44444443 9999999999998886 344455555555 455666432 358999999999
Q ss_pred CcEE-EEeccCCcEEEEEEccCCCEEEEEecCCc-EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 427 CHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGD-CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 427 ~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
-+.+ ....|++.+.+++|+|+|.+||+++..|+ ||||.+.+++...+... ......|.+++|+| ++++|.+
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR------G~~~~~IySL~Fs~-ds~~L~~ 235 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR------GTYPVSIYSLSFSP-DSQFLAA 235 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC------CceeeEEEEEEECC-CCCeEEE
Confidence 8877 45579999999999999999999999998 89999999887654321 11246699999999 8899999
Q ss_pred EeCCCcEEEEeC
Q 005646 505 SCADSQVRILQG 516 (686)
Q Consensus 505 ~s~D~~I~iwd~ 516 (686)
.+..++|.|+.+
T Consensus 236 sS~TeTVHiFKL 247 (391)
T KOG2110|consen 236 SSNTETVHIFKL 247 (391)
T ss_pred ecCCCeEEEEEe
Confidence 999999999964
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.6e-14 Score=145.07 Aligned_cols=206 Identities=19% Similarity=0.361 Sum_probs=158.4
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
+.++.++.||++.|-+-..+- .+.+.+|.+.|.+-.|+|||.-|+|+|+||.|++|.-. |..
T Consensus 76 d~~~i~s~DGkf~il~k~~rV--------E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GML--------- 137 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARV--------ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GML--------- 137 (737)
T ss_pred ceEEEEcCCceEEEecccchh--------hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chH---------
Confidence 467888999999888533221 13467899999999999999999999999999999843 321
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSA 371 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~ 371 (686)
..++.....+|.|++|.|+. .|++.
T Consensus 138 -----------------------------------------------------RStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 138 -----------------------------------------------------RSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred -----------------------------------------------------HHHHhhcCceeEEEEECCCCCceEEec
Confidence 01112245689999999987 55554
Q ss_pred ECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCE
Q 005646 372 SIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG 450 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~ 450 (686)
+ +.+.|=-+.....+..+. |.+-|.|+.|+| ..+++++|+.|-+.+|||.....+.....|..+|++++|.|+ +.
T Consensus 165 g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~ 240 (737)
T KOG1524|consen 165 G--GHISIKPLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KD 240 (737)
T ss_pred C--CeEEEeecccccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cc
Confidence 4 455555555544444444 999999999999 899999999999999999988877788889999999999999 77
Q ss_pred EEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 451 GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 451 l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
+++++. ++.|+= +...+.|..++|++ |+..++.|+..|.+.+-.
T Consensus 241 ~~v~S~-nt~R~~-------------------~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 241 YLLWSY-NTARFS-------------------SPRVGSIFNLSWSA-DGTQATCGTSTGQLIVAY 284 (737)
T ss_pred eeeeee-eeeeec-------------------CCCccceEEEEEcC-CCceeeccccCceEEEee
Confidence 777764 244421 22336699999999 899999999999887754
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-12 Score=127.53 Aligned_cols=191 Identities=16% Similarity=0.244 Sum_probs=144.7
Q ss_pred eeecCCCccceeecc--ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 208 RVRLNEEDAMFCSKV--QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 208 ~~s~~~~~l~~g~~d--~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
..-++...+|..+.+ +.+++.+.++...-..-. ...+|.++.++.+ .|+.+=++. |.|||+.+.+.+
T Consensus 51 EmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~--------fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklL 119 (391)
T KOG2110|consen 51 EMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF--------FPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLL 119 (391)
T ss_pred EeecccceeEEEecCCCceEEEEEcccCceEEEEe--------cCCceEEEEEccc--eEEEEEccc-EEEEecccceee
Confidence 334555666555444 458888877654321111 3457999998754 677776654 999999998876
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
+.+... ..+...+.+++.++.
T Consensus 120 hTI~t~-----------------------------------------------------------~~n~~gl~AlS~n~~ 140 (391)
T KOG2110|consen 120 HTIETT-----------------------------------------------------------PPNPKGLCALSPNNA 140 (391)
T ss_pred hhhhcc-----------------------------------------------------------CCCccceEeeccCCC
Confidence 655422 124556777777776
Q ss_pred C-EEEE--EECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCc-EEEEecCCCcEEEEecc---CC
Q 005646 366 N-YLLS--ASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGK-VRIWAVLSCHVVDWVDI---RQ 437 (686)
Q Consensus 366 ~-~L~s--~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~-V~iwd~~~~~~~~~~~~---~~ 437 (686)
+ +|+- ....|.|.|||+.+-+.+..+. |.+.+.|++|+| +|.+|||+|..|+ ||++.+.+++.+..+.- ..
T Consensus 141 n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~ 219 (391)
T KOG2110|consen 141 NCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPV 219 (391)
T ss_pred CceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceee
Confidence 6 6663 2346899999999999999998 999999999999 9999999999998 79999999988754432 34
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCe
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
.|.+++|+||+++|++.+..++|++|.+....
T Consensus 220 ~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 220 SIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 58899999999999999999999999997544
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.5e-14 Score=131.76 Aligned_cols=242 Identities=20% Similarity=0.329 Sum_probs=160.6
Q ss_pred eecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEe
Q 005646 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (686)
.+++|.+.|+++.|..++ +|.+|..-|.|++|++++......+..
T Consensus 9 vLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~---------------------------------- 53 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRL---------------------------------- 53 (323)
T ss_pred Eeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhh----------------------------------
Confidence 467899999999999877 499999999999999998764443331
Q ss_pred eccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCC-------------------
Q 005646 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGND------------------- 385 (686)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~------------------- 385 (686)
.|...|+.+.--|++.|.+-+.|..+.+|++.-+
T Consensus 54 ---------------------------~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfS 106 (323)
T KOG0322|consen 54 ---------------------------FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFS 106 (323)
T ss_pred ---------------------------hccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeeccccccccce
Confidence 1333444444444444444444444444444321
Q ss_pred ------------------------------eeeeEe-----eCCCCeEEEEEeecCCC--EEEEEEcCCcEEEEecCCCc
Q 005646 386 ------------------------------HCLRVF-----PHSNYVTCVHFNPVDDN--YFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 386 ------------------------------~~~~~~-----~h~~~V~~v~fsp~~~~--~l~sgs~Dg~V~iwd~~~~~ 428 (686)
..+... ...+.+.|..+...++. +++.|..+|.|.+||+.++.
T Consensus 107 l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~ 186 (323)
T KOG0322|consen 107 LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGD 186 (323)
T ss_pred eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCc
Confidence 111111 13355666664332333 56778899999999999873
Q ss_pred EE-----------EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCC--eeeeeeeEEeeccccCCCCCeEEEEEe
Q 005646 429 VV-----------DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN--HLELDAEICVHSKKKAPCKRITGFQFL 495 (686)
Q Consensus 429 ~~-----------~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~I~~l~fs 495 (686)
.+ ....|.++|.++.|.+.-..=++|+.+..+..|++... .++....+++.. ..|.++..-
T Consensus 187 ~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn------pGv~gvrIR 260 (323)
T KOG0322|consen 187 KIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN------PGVSGVRIR 260 (323)
T ss_pred eeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecC------CCccceEEc
Confidence 22 33457889999999987777788889999999998643 343333333322 347777777
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCC
Q 005646 496 PQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCG 575 (686)
Q Consensus 496 p~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g 575 (686)
| |++.+||++.|+.||||+..+...
T Consensus 261 p----------------------------D~KIlATAGWD~RiRVyswrtl~p--------------------------- 285 (323)
T KOG0322|consen 261 P----------------------------DGKILATAGWDHRIRVYSWRTLNP--------------------------- 285 (323)
T ss_pred c----------------------------CCcEEeecccCCcEEEEEeccCCc---------------------------
Confidence 7 999999999999999999988652
Q ss_pred CcCCCCCCCCcccccCCC--CCcccccCCCccccCccccccCCCCCCCCCC
Q 005646 576 LKCGNAEKEPQLHVSDDD--SPENLAFAPARFSLGQEYVFESFPKGCATWP 624 (686)
Q Consensus 576 ~~~~~~~~g~~l~~~~~~--~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~ 624 (686)
|+++..| ..+.++|+|| ...+.+++.|..+..|.
T Consensus 286 -----------LAVLkyHsagvn~vAfspd----~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 286 -----------LAVLKYHSAGVNAVAFSPD----CELMAAASKDARISLWK 321 (323)
T ss_pred -----------hhhhhhhhcceeEEEeCCC----CchhhhccCCceEEeee
Confidence 2222222 2345678888 34444678888888886
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-13 Score=137.90 Aligned_cols=265 Identities=18% Similarity=0.176 Sum_probs=183.2
Q ss_pred ccCCceEEEEEeeCCCEE-EEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 248 AHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~L-asgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
.|...-+.|..+|||+|| |||..--.|++||+.+-....+-.+....+....++.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsD------------------------ 104 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSD------------------------ 104 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEecc------------------------
Confidence 477888999999999985 6677788999999987654443332222111111111
Q ss_pred cCCceEEEeCCccccccCCC--eEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEE
Q 005646 327 TSESACVVFPPKVFRILEKP--LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~--~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~f 402 (686)
.....+++-..+...+..+. -..+ --...-.+|+++.-. -|+.++....|.-.++..|+.+..|. ..+.+++|..
T Consensus 105 D~SK~v~L~~DR~IefHak~G~hy~~-RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~i 183 (703)
T KOG2321|consen 105 DYSKSVFLQNDRTIEFHAKYGRHYRT-RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSI 183 (703)
T ss_pred chhhheEeecCceeeehhhcCeeeee-ecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeee
Confidence 11111111111111100000 0000 011233466666544 56666666778889999999999998 5699999999
Q ss_pred eecCCCEEEEEEcCCcEEEEecCCCcEEEEeccC-------C-----cEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR-------Q-----IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 403 sp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~-------~-----~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
++ -..+|++|+.+|.|-.||.++...+...... + .|+++.|+.+|-.+++|+.+|.+.|||++..+.
T Consensus 184 n~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 184 NE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred cC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence 99 7889999999999999999988765443322 2 399999999999999999999999999998776
Q ss_pred eeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC--------------cceeEcCCCCEEEEEeCCC
Q 005646 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP--------------NVIGKYKDGKHIVSAGEDS 536 (686)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~--------------~~~~~~~dg~~l~sgs~Dg 536 (686)
.+.. ......+|..+.|.+.+....++......++|||-. +.+|+.|++.++++|-+++
T Consensus 263 l~~k-------dh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 263 LLVK-------DHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred eeec-------ccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCC
Confidence 5422 222346799999988666666667777889999843 3488999999999999999
Q ss_pred cEEEEeCCC
Q 005646 537 NVYMWNCIG 545 (686)
Q Consensus 537 ~V~iWd~~~ 545 (686)
.+..|=+..
T Consensus 336 ~m~~yyiP~ 344 (703)
T KOG2321|consen 336 KMHTYYIPS 344 (703)
T ss_pred cceeEEccc
Confidence 888876654
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-13 Score=140.33 Aligned_cols=181 Identities=14% Similarity=0.246 Sum_probs=139.6
Q ss_pred CeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 346 PLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
.-..+.+|.+.|.+-.|+|+| -|++++.||.|++|.- +|-...++. ...+|.|++|.|...+.+++.+ +.+.|=-
T Consensus 96 VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKp 172 (737)
T KOG1524|consen 96 VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKP 172 (737)
T ss_pred hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEee
Confidence 345567899999999999999 9999999999999974 444333333 7789999999995555665544 4555555
Q ss_pred cC-CCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE
Q 005646 424 VL-SCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (686)
Q Consensus 424 ~~-~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l 502 (686)
+. +.+++.|..|.+.|.++.|+|....+++|+.|-..+|||.....+- ....|..+|++++|.| + ..+
T Consensus 173 L~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf---------~S~~~ey~ITSva~np-d-~~~ 241 (737)
T KOG1524|consen 173 LAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLF---------TSAAEEYAITSVAFNP-E-KDY 241 (737)
T ss_pred cccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccc---------cCChhccceeeeeecc-c-cce
Confidence 54 4467899999999999999999999999999999999998755432 1345778899999999 4 555
Q ss_pred EEEeCCCcEEEEeCCc----ceeEcCCCCEEEEEeCCCcEEEE
Q 005646 503 MVSCADSQVRILQGPN----VIGKYKDGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 503 ~~~s~D~~I~iwd~~~----~~~~~~dg~~l~sgs~Dg~V~iW 541 (686)
++++ -+++|+=.+.. .++|++||..+++|...|.|.+=
T Consensus 242 ~v~S-~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 242 LLWS-YNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeee-eeeeeecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 5554 34566433332 37899999999999999987653
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=137.63 Aligned_cols=202 Identities=20% Similarity=0.223 Sum_probs=141.6
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.+.+|..+|..+++|+.||.++||++..... ..+..+|.+.|.+|.|+|||++|++-+.| ..+||+++++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t-------~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT-------ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh-------hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence 6788999999999999999999998654333 23466799999999999999999999999 899999999965
Q ss_pred eeeeccCCC--CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCcccccc-CCCeEEeccCCCCeeEEE
Q 005646 285 LTEVDIPEI--DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL-EKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 285 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~V~~l~ 361 (686)
+......+. ....+.|..+.......+........ .+..+....|+-. --+..+...-...|.+++
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~-----------~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~ 288 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGG-----------GVRLCDISLWSGSNFLRLRKKIKRFKSISSLA 288 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCC-----------ceeEEEeeeeccccccchhhhhhccCcceeEE
Confidence 555442111 12223333332222222211111111 1111111111110 001111122335799999
Q ss_pred eeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC
Q 005646 362 WSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 362 ~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~ 426 (686)
.+++| +++.|++||.|-|++..+.++++..+ |...|+.+.|+| +.+++++.+.|.+.++..+.-
T Consensus 289 VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 289 VSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 99999 99999999999999999999998887 999999999999 999999999999888887654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-13 Score=147.17 Aligned_cols=238 Identities=16% Similarity=0.222 Sum_probs=163.2
Q ss_pred CccceeeccceEEEEEcCCcc---ccccccccCceecc----cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 214 EDAMFCSKVQRVKVYHCKKRS---KELSALYKGQEIQA----HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~---~~~~~~~~~~~l~~----H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
..+++|+.||.|+||+-.... .++.+.. ..+.+ -.+.=.-+.|.....+|+++|.-..|||||........
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw--~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAW--SSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEee--ccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 468899999999999753321 1222111 11222 22222456777765577777777999999998766444
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC-C
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-N 365 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~ 365 (686)
.+.. +...-|++|.-+. .
T Consensus 1202 diP~-------------------------------------------------------------~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1202 DIPY-------------------------------------------------------------GSSTLVTALSADLVH 1220 (1387)
T ss_pred eccc-------------------------------------------------------------CCCccceeecccccC
Confidence 3321 1233445554332 2
Q ss_pred C-EEEEEECCCcEEEEECCCCe---eeeEee-CCCC--eEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE---EEecc
Q 005646 366 N-YLLSASIDKTVRLWRVGNDH---CLRVFP-HSNY--VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV---DWVDI 435 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~---~~~~~~-h~~~--V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~---~~~~~ 435 (686)
| .++.|-.||.|++||.+... .+..+. |+.. |..+.+.+..-..|++|+.||.|++||++..... ....+
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence 3 89999999999999998654 344555 7777 9999999844456999999999999999984322 22222
Q ss_pred ---CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 436 ---RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 436 ---~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
.+..+++..+++...+|+|+. +.|.||++...++..... ...........+.+++|+| ..-++++|+.|+.|.
T Consensus 1301 ~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~--n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKY--NPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVS 1376 (1387)
T ss_pred cccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhccccc--CcccccCcCCCcceeeecc-hhHhhhhccCCceEE
Confidence 235999999999999999988 999999998765433211 1111223346679999999 677889999999999
Q ss_pred EEeCCc
Q 005646 513 ILQGPN 518 (686)
Q Consensus 513 iwd~~~ 518 (686)
||...+
T Consensus 1377 iYs~~k 1382 (1387)
T KOG1517|consen 1377 IYSCEK 1382 (1387)
T ss_pred EeecCC
Confidence 997653
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-11 Score=130.51 Aligned_cols=187 Identities=14% Similarity=0.148 Sum_probs=128.9
Q ss_pred CCeeEEEeeCCC-EEEEE-ECCCcEEEEECCC-Cee--eeEeeCCCCeEEEEEeecCCCEEEEEEc-CCcEEEEecCC-C
Q 005646 355 GEILDLSWSKNN-YLLSA-SIDKTVRLWRVGN-DHC--LRVFPHSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLS-C 427 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~-s~Dg~V~iWd~~~-~~~--~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~~~-~ 427 (686)
+....++++|++ +|+++ ..++.|.+|++.. ++. +......+....++|+| ++++|++++. ++.|.+|++.+ +
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCC
Confidence 456678999999 66555 4588999999973 332 23333455678899999 8888887764 88999999964 2
Q ss_pred c---EEEEeccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCeeeee-eeEEeeccccCCCCCeEEEEEeCCCCCeE
Q 005646 428 H---VVDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELD-AEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (686)
Q Consensus 428 ~---~~~~~~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~I~~l~fsp~~~~~l 502 (686)
. .+...........++++|+|+++++++ .++.|.+||+.+...... ...... .........+.|+| +++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~---~~~g~~p~~~~~~p-dg~~l 189 (330)
T PRK11028 114 IPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT---TVEGAGPRHMVFHP-NQQYA 189 (330)
T ss_pred CCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee---cCCCCCCceEEECC-CCCEE
Confidence 2 223233334567889999999886654 569999999976332110 000000 01123467899999 77777
Q ss_pred EEEeC-CCcEEEEeCCc-------------------------ceeEcCCCCEEEEEeC-CCcEEEEeCCCC
Q 005646 503 MVSCA-DSQVRILQGPN-------------------------VIGKYKDGKHIVSAGE-DSNVYMWNCIGH 546 (686)
Q Consensus 503 ~~~s~-D~~I~iwd~~~-------------------------~~~~~~dg~~l~sgs~-Dg~V~iWd~~~~ 546 (686)
+++.. +++|.+|+... .+.++|+|++|+++.. ++.|.+|+++..
T Consensus 190 yv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 190 YCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred EEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 66665 89999998631 1457799999999864 789999999754
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.2e-14 Score=142.50 Aligned_cols=177 Identities=20% Similarity=0.309 Sum_probs=139.1
Q ss_pred CeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeec-CCCEEEEEEcCCcEEE
Q 005646 346 PLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPV-DDNYFISGSIDGKVRI 421 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~-~~~~l~sgs~Dg~V~i 421 (686)
.-.++.||.+-|.+|.|+.+| +|++||.|-.+.|||.-..+.+..+. |...|.|+.|-|. +..++++|+.|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 346788999999999999999 99999999999999999989988887 9999999999995 4568889999999999
Q ss_pred EecCCCc-----------EEEEeccCCcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeee---EEeeccccCCC
Q 005646 422 WAVLSCH-----------VVDWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAE---ICVHSKKKAPC 486 (686)
Q Consensus 422 wd~~~~~-----------~~~~~~~~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~ 486 (686)
+|+...+ ...+..|...|..++..|++ ..+.+++.||+|+-||++....-.... ..+.. .....
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n-y~~~l 200 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN-YNPQL 200 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHH-hchhh
Confidence 9998521 12455677888899999988 789999999999999998643211110 00000 01112
Q ss_pred CCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEc
Q 005646 487 KRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY 523 (686)
Q Consensus 487 ~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~ 523 (686)
-...++..+|.++.+|++|+.|--.|+||....+.-+
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~ 237 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSF 237 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCC
Confidence 3467899999999999999999999999965444333
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.7e-12 Score=124.34 Aligned_cols=283 Identities=15% Similarity=0.252 Sum_probs=180.9
Q ss_pred CceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeec-cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCC
Q 005646 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD-IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (686)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (686)
-.+..++|++.-..+|++..|-+|++|+-.. .....++ ....++.|+.+.+..... +.+.......++.......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsase---lavgCr~gIciW~~s~tln 174 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASE---LAVGCRAGICIWSDSRTLN 174 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcce---eeeeecceeEEEEcCcccc
Confidence 4577889998777789999999999999766 4333333 334566777777665542 2333333333333322222
Q ss_pred ceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC-CCcEEEEECCCCeeeeEee-CCCCeEEEEEeecC
Q 005646 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-DKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVD 406 (686)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~-Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~ 406 (686)
....+- ........+..-.|| .+|+.|+|.+|| .|++++. |..|+|||..++.++.... ..+.++-+.|+| |
T Consensus 175 ~~r~~~---~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-d 249 (445)
T KOG2139|consen 175 ANRNIR---MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-D 249 (445)
T ss_pred cccccc---cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-C
Confidence 111000 000001123334466 789999999999 8888875 6789999999998887764 668899999999 9
Q ss_pred CCEEEEEEcCCcEEEEecC-CCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe--eeee-----eeEE-
Q 005646 407 DNYFISGSIDGKVRIWAVL-SCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH--LELD-----AEIC- 477 (686)
Q Consensus 407 ~~~l~sgs~Dg~V~iwd~~-~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~--~~~~-----~~~~- 477 (686)
+.+|+++.-|+..++|... +-....+.-..+.|...+|+|+|++|+.... |.-++|.+.-.. .... ....
T Consensus 250 gd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~ll 328 (445)
T KOG2139|consen 250 GDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLL 328 (445)
T ss_pred CCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeee
Confidence 9999999999999999544 4445567777779999999999998877643 455666653111 1100 0000
Q ss_pred ---e-----eccccCCCCCeEEEEEeCCCCCeEEEEeCCCc--------EEEEeCCc------------------ceeEc
Q 005646 478 ---V-----HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ--------VRILQGPN------------------VIGKY 523 (686)
Q Consensus 478 ---~-----~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~--------I~iwd~~~------------------~~~~~ 523 (686)
+ .....--.+.+.+++|.| .+.+|++.-..+. |.+||... .++|.
T Consensus 329 iaDL~e~ti~ag~~l~cgeaq~lawDp-sGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~ 407 (445)
T KOG2139|consen 329 IADLQEVTICAGQRLCCGEAQCLAWDP-SGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFG 407 (445)
T ss_pred eccchhhhhhcCcccccCccceeeECC-CCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEee
Confidence 0 001111256788899999 7777777655433 55565432 23343
Q ss_pred C---CCCEEEEEeCCCcEEEEeCC
Q 005646 524 K---DGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 524 ~---dg~~l~sgs~Dg~V~iWd~~ 544 (686)
| +|.+|..+-.-|.+.-|.+.
T Consensus 408 pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 408 PLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ecccCCcEEEEEeccCceEeeeeE
Confidence 3 66677777777777766654
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.6e-13 Score=135.11 Aligned_cols=198 Identities=21% Similarity=0.361 Sum_probs=138.8
Q ss_pred cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCC-EEEEEeCCCcEEEEEeecCeeeeeec
Q 005646 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVD 289 (686)
Q Consensus 211 ~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~vWd~~~~~~~~~~~ 289 (686)
..+-.+++|-..|.|.+.+-.. .++..++....+ -.+..|+|++|-|.+. .++.+-.+|.+.++|..-..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~--~~~sklfne~r~-i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------ 253 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPIN--FEVSKLFNEERL-INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------ 253 (636)
T ss_pred CCCcceEEeeccCceEEecchh--hHHHHhhhhccc-ccccceEEEEEEeCCCceEEEEEecCceEEeeccccc------
Confidence 4455788888889998887654 344444433222 2457899999999544 45555678999999872111
Q ss_pred cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EE
Q 005646 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL 368 (686)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L 368 (686)
....+....+.. ++...+.....+. ...|+..+.--.+.|...+|+||| +|
T Consensus 254 -~~t~p~~~~~k~------------~~~f~i~t~ksk~---------------~rNPv~~w~~~~g~in~f~FS~DG~~L 305 (636)
T KOG2394|consen 254 -GATAPSYQALKD------------GDQFAILTSKSKK---------------TRNPVARWHIGEGSINEFAFSPDGKYL 305 (636)
T ss_pred -cCCCCcccccCC------------CCeeEEeeeeccc---------------cCCccceeEeccccccceeEcCCCceE
Confidence 111111100000 0000000000000 013555555556699999999999 99
Q ss_pred EEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE-eccCCcEEEEEEcc
Q 005646 369 LSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW-VDIRQIVTAVCYRP 446 (686)
Q Consensus 369 ~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~-~~~~~~V~~v~~sp 446 (686)
|+.|.||.+||+|..+.+.+..++ .-+...|++|+| |++||++|+.|--|.||.+..++++.. .+|+..|+.|+|.|
T Consensus 306 A~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 306 ATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999998887777 668899999999 999999999999999999999999854 67999999999998
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-11 Score=134.58 Aligned_cols=215 Identities=12% Similarity=0.055 Sum_probs=143.2
Q ss_pred cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC---CCcEEEEEeecCeeeeeeccCCCCCcce
Q 005646 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD---DGVVRLWQVVEDERLTEVDIPEIDPSCI 298 (686)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~vWd~~~~~~~~~~~~~~~~~~~~ 298 (686)
...|.++|++.... +.+..+...+...+|+|||+.|+..+. +..|.+|++.+++..
T Consensus 178 ~~~l~~~d~dg~~~--------~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~------------- 236 (429)
T PRK03629 178 PYELRVSDYDGYNQ--------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR------------- 236 (429)
T ss_pred ceeEEEEcCCCCCC--------EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------
Confidence 34688887765432 334457778999999999999987642 357888888766421
Q ss_pred EEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEE-EECCC-
Q 005646 299 YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLS-ASIDK- 375 (686)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s-~s~Dg- 375 (686)
.+..+.+| +..++|+|+| .|+. .+.++
T Consensus 237 -----------------------------------------------~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~ 266 (429)
T PRK03629 237 -----------------------------------------------QVASFPRH---NGAPAFSPDGSKLAFALSKTGS 266 (429)
T ss_pred -----------------------------------------------EccCCCCC---cCCeEECCCCCEEEEEEcCCCC
Confidence 11112222 3468999999 5654 34455
Q ss_pred -cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC-Cc--EEEEecCCCcEEEEeccCCcEEEEEEccCCCEE
Q 005646 376 -TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID-GK--VRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGG 451 (686)
Q Consensus 376 -~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D-g~--V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l 451 (686)
.|.+||+.+++......+...+....|+| +++.|+..+.+ +. |.++|+.++...............+|+|||++|
T Consensus 267 ~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFM 345 (429)
T ss_pred cEEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence 58899999887766555666788999999 99988777654 44 555577777665554444456678999999999
Q ss_pred EEEecC---CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCE
Q 005646 452 IVGSMM---GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKH 528 (686)
Q Consensus 452 ~~gs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~ 528 (686)
+..+.+ ..|++||+.++..... .. . .......|+| ||++
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~~L-----t~---~--~~~~~p~~Sp----------------------------DG~~ 387 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQVL-----TD---T--FLDETPSIAP----------------------------NGTM 387 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeEEe-----CC---C--CCCCCceECC----------------------------CCCE
Confidence 886553 3488889877653321 10 0 1122345666 8888
Q ss_pred EEEEeCCCc---EEEEeCCCC
Q 005646 529 IVSAGEDSN---VYMWNCIGH 546 (686)
Q Consensus 529 l~sgs~Dg~---V~iWd~~~~ 546 (686)
|+.++.|+. +++++++..
T Consensus 388 i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 388 VIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EEEEEcCCCceEEEEEECCCC
Confidence 888887764 677777543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-11 Score=135.02 Aligned_cols=175 Identities=13% Similarity=0.093 Sum_probs=126.5
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC---CCcEEEEEeecCeeeeeeccCCCCCcceE
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD---DGVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~ 299 (686)
..|.++|.+... .+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.
T Consensus 182 ~~l~~~d~dg~~--------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--------------- 238 (435)
T PRK05137 182 KRLAIMDQDGAN--------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--------------- 238 (435)
T ss_pred eEEEEECCCCCC--------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---------------
Confidence 467777764332 2346678889999999999999988764 46899999977652
Q ss_pred EeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EE-EEEECCCc-
Q 005646 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDKT- 376 (686)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L-~s~s~Dg~- 376 (686)
..+..+.+.+...+|+|+| .| ++.+.++.
T Consensus 239 ------------------------------------------------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 239 ------------------------------------------------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred ------------------------------------------------EEeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 1122344566788999999 55 46666665
Q ss_pred -EEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-CC--cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEE
Q 005646 377 -VRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DG--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI 452 (686)
Q Consensus 377 -V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~ 452 (686)
|.+||+.++.......+....+...|+| +++.|+..+. +| .|++||+.++....+......+....|+|||+.|+
T Consensus 271 ~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 271 DIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred eEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEE
Confidence 7777988887655544666778899999 8988887764 33 68888988877666555555677789999999998
Q ss_pred EEecC---CcEEEEeCCCCe
Q 005646 453 VGSMM---GDCRFYNVSDNH 469 (686)
Q Consensus 453 ~gs~d---g~i~iwd~~~~~ 469 (686)
....+ ..|.+||+.++.
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred EEEcCCCceEEEEEECCCCc
Confidence 87653 257888875543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.3e-12 Score=136.23 Aligned_cols=177 Identities=19% Similarity=0.158 Sum_probs=124.3
Q ss_pred cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC---CcEEEEEeecCeeeeeeccCCCCCcce
Q 005646 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSCI 298 (686)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~vWd~~~~~~~~~~~~~~~~~~~~ 298 (686)
...|.+||..... .+.+..|...+.+.+|+|||++|+..+.+ ..|.+||+.+++..
T Consensus 183 ~~~l~i~D~~g~~--------~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~------------- 241 (433)
T PRK04922 183 RYALQVADSDGYN--------PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE------------- 241 (433)
T ss_pred eEEEEEECCCCCC--------ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-------------
Confidence 3468888765432 23455678889999999999999988743 46999998776521
Q ss_pred EEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EE-EEEECCC-
Q 005646 299 YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDK- 375 (686)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L-~s~s~Dg- 375 (686)
.+..+.+....++|+|+| .| ++.+.++
T Consensus 242 --------------------------------------------------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~ 271 (433)
T PRK04922 242 --------------------------------------------------LVASFRGINGAPSFSPDGRRLALTLSRDGN 271 (433)
T ss_pred --------------------------------------------------EeccCCCCccCceECCCCCEEEEEEeCCCC
Confidence 111123334578999999 55 4556665
Q ss_pred -cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-CCc--EEEEecCCCcEEEEeccCCcEEEEEEccCCCEE
Q 005646 376 -TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DGK--VRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGG 451 (686)
Q Consensus 376 -~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg~--V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l 451 (686)
.|.+||+.+++......+.......+|+| +++.|+..+. +|. |.++|+.+++.............++|+|||++|
T Consensus 272 ~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 272 PEIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKI 350 (433)
T ss_pred ceEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence 59999999887655444656667899999 8988887764 444 677777777665444333445578999999999
Q ss_pred EEEecCC---cEEEEeCCCCee
Q 005646 452 IVGSMMG---DCRFYNVSDNHL 470 (686)
Q Consensus 452 ~~gs~dg---~i~iwd~~~~~~ 470 (686)
+..+.++ .|.+||+.++..
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred EEEECCCCceeEEEEECCCCCe
Confidence 8875543 599999977654
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-12 Score=131.75 Aligned_cols=185 Identities=16% Similarity=0.220 Sum_probs=130.9
Q ss_pred CCCeeEEEeeCCC--EEEEEECCCcEEEEECCCC----------------------------eeeeEee-CCCCeEEEEE
Q 005646 354 SGEILDLSWSKNN--YLLSASIDKTVRLWRVGND----------------------------HCLRVFP-HSNYVTCVHF 402 (686)
Q Consensus 354 ~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~----------------------------~~~~~~~-h~~~V~~v~f 402 (686)
...|+++.|-|.+ .++.+-.+|.+.+||..-. .++..+. -.+.|+..+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 4789999999976 7888888999999976210 0111111 3457888999
Q ss_pred eecCCCEEEEEEcCCcEEEEecCCCcEEEEe-ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 403 sp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
+| |+.+||+.+.||.+||||..+.+++... ..-+...|++|+|||++|++|+.|.-|.||.+...+++. .
T Consensus 299 S~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA--------R 369 (636)
T KOG2394|consen 299 SP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA--------R 369 (636)
T ss_pred cC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE--------e
Confidence 99 9999999999999999999998877433 345678999999999999999999999999999887654 3
Q ss_pred ccCCCCCeEEEEEeCCCCC---eEEEEeCCCcEEE----EeCC-----c--ceeEcC------CCCEEEEEeCCCcEEEE
Q 005646 482 KKAPCKRITGFQFLPQDSS---KVMVSCADSQVRI----LQGP-----N--VIGKYK------DGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~---~l~~~s~D~~I~i----wd~~-----~--~~~~~~------dg~~l~sgs~Dg~V~iW 541 (686)
-.+|..+|+.++|.|..-. ..-..+.|++..= .... + ....++ ..-.|.+.+.|-++.+|
T Consensus 370 GqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLW 449 (636)
T KOG2394|consen 370 GQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLW 449 (636)
T ss_pred ccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEE
Confidence 4678899999999972100 0000111111110 0000 0 000000 23478899999999999
Q ss_pred eCCCCC
Q 005646 542 NCIGHE 547 (686)
Q Consensus 542 d~~~~~ 547 (686)
|+....
T Consensus 450 DlteD~ 455 (636)
T KOG2394|consen 450 DLTEDV 455 (636)
T ss_pred ecchhh
Confidence 998755
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5e-14 Score=150.84 Aligned_cols=275 Identities=15% Similarity=0.173 Sum_probs=183.4
Q ss_pred CeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 346 PLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
.+..+.||...|.|..|...| ++++|+.|..|+||.+.++.|+.... |.+.|+.++.+. +.-++++++.|..||+|-
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEe
Confidence 455678999999999999999 99999999999999999999999998 999999999987 888999999999999999
Q ss_pred cCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE
Q 005646 424 VLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (686)
Q Consensus 424 ~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l 502 (686)
++++..+ .+.+|.+.|++++|+|-- +.+.||++++||.+-...... ...........+..+.|..
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~----prp~~~~~~~~~~s~~~~~------ 326 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYV----PRPLKFTEKDLVDSILFEN------ 326 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccC----CCCCCcccccceeeeeccc------
Confidence 9999887 567899999999999964 677899999999872111110 0000111123355555555
Q ss_pred EEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccc-ccccc----CCcEEEecCCCCc
Q 005646 503 MVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRS-LERFT----TNASIAIPWCGLK 577 (686)
Q Consensus 503 ~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~-~~~~~----~~~~v~~s~~g~~ 577 (686)
++..++||+.|+.-..|.+.--. .+.+.. +..+. ...+.+....-..
T Consensus 327 ----------------------~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~ 378 (1113)
T KOG0644|consen 327 ----------------------NGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLC 378 (1113)
T ss_pred ----------------------cccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEee
Confidence 45555555555555555543211 000000 00000 1123333333445
Q ss_pred CCCCCCCCcccccCCCCC--cccccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccC
Q 005646 578 CGNAEKEPQLHVSDDDSP--ENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCT 655 (686)
Q Consensus 578 ~~~~~~g~~l~~~~~~~~--~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (686)
+|+..+|..++.+.+|.. .++.+.|-... -..++.-|+...+|+.-...+.... ..++++...+
T Consensus 379 vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r---i~msag~dgst~iwdi~eg~pik~y------~~gh~kl~d~----- 444 (1113)
T KOG0644|consen 379 VWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR---IAMSAGYDGSTIIWDIWEGIPIKHY------FIGHGKLVDG----- 444 (1113)
T ss_pred eeecccchhhhhhcccccceeeeeecCCCcH---hhhhccCCCceEeeecccCCcceee------ecccceeecc-----
Confidence 677777888887776654 45556664211 1234667888899995443322211 1224443332
Q ss_pred ccCCCCceEEEEecCCCeEeEEe
Q 005646 656 TSSHAWGLVIVTAGWDGRIRSFL 678 (686)
Q Consensus 656 ~~~~~~g~~ivT~~~DG~Ir~w~ 678 (686)
.++.+|+.|+-..+-|.+-|+.
T Consensus 445 -kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 445 -KFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred -ccCCCCceEecCCCCCceEEec
Confidence 3566799999888888887763
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-12 Score=121.30 Aligned_cols=112 Identities=19% Similarity=0.382 Sum_probs=91.2
Q ss_pred CCCCeeEEEeeCCC-EEE--EEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC---CcEEEEecCC
Q 005646 353 HSGEILDLSWSKNN-YLL--SASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---GKVRIWAVLS 426 (686)
Q Consensus 353 h~~~V~~l~~s~~~-~L~--s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D---g~V~iwd~~~ 426 (686)
..++|.+++|+|++ .|+ .|..++.|.+||++ ++.+..+. ...++.|.|+| ++++|++++.+ |.|.+||+++
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 34579999999999 543 45578899999996 55555554 56788999999 99999998754 6799999999
Q ss_pred CcEEEEeccCCcEEEEEEccCCCEEEEEec------CCcEEEEeCCCC
Q 005646 427 CHVVDWVDIRQIVTAVCYRPDGQGGIVGSM------MGDCRFYNVSDN 468 (686)
Q Consensus 427 ~~~~~~~~~~~~V~~v~~spdg~~l~~gs~------dg~i~iwd~~~~ 468 (686)
.+.+....+.. ++.++|+|||++|++++. |+.++||+....
T Consensus 135 ~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 135 KKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 88887766554 789999999999999864 788999998644
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-11 Score=138.65 Aligned_cols=217 Identities=16% Similarity=0.222 Sum_probs=150.9
Q ss_pred ceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 244 QEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
..++.|...|..++.++. +.+++|||.||+|++|+...-..-. . .
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------~--------------------------s-- 1087 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------G--------------------------S-- 1087 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc------c--------------------------e--
Confidence 456779999999999875 5999999999999999986533100 0 0
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCe-------eeeEee--
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-------CLRVFP-- 392 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~-------~~~~~~-- 392 (686)
.+...++.-....+.++...+.+ .+|.++.||.|++.+++... +.+...
T Consensus 1088 ---------------------~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~ 1146 (1431)
T KOG1240|consen 1088 ---------------------ARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLK 1146 (1431)
T ss_pred ---------------------eeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeeccccc
Confidence 01122333345678888888888 99999999999999987621 111112
Q ss_pred CCC-CeEEEEEeecCCC-EEEEEEcCCcEEEEecCCCcEEE---EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 393 HSN-YVTCVHFNPVDDN-YFISGSIDGKVRIWAVLSCHVVD---WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 393 h~~-~V~~v~fsp~~~~-~l~sgs~Dg~V~iwd~~~~~~~~---~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
..+ .|..-+|...... .++.+..-+.|..||++...... .....+.|++++.+|.++++++|+..|.+-+||++-
T Consensus 1147 ~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1147 KDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred CCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec
Confidence 223 3444455543445 77778888999999999876542 233467899999999999999999999999999986
Q ss_pred CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEe--CCCcEEEEeCCC
Q 005646 468 NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAG--EDSNVYMWNCIG 545 (686)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs--~Dg~V~iWd~~~ 545 (686)
+.+... ....+..+|..+..+|-. +.....++++ ..+-|-+|++.+
T Consensus 1227 ~~~i~s-------w~~P~~~~i~~v~~~~~~-------------------------~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1227 RVPILS-------WEHPARAPIRHVWLCPTY-------------------------PQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred Cceeec-------ccCcccCCcceEEeeccC-------------------------CCCceEEEecccCCCceeeeeccc
Confidence 654432 233445778888887722 1223444443 456788888887
Q ss_pred CC
Q 005646 546 HE 547 (686)
Q Consensus 546 ~~ 547 (686)
+.
T Consensus 1275 g~ 1276 (1431)
T KOG1240|consen 1275 GL 1276 (1431)
T ss_pred Cc
Confidence 64
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-13 Score=130.30 Aligned_cols=185 Identities=15% Similarity=0.223 Sum_probs=135.8
Q ss_pred CCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCC-CEEEEEEcCCcEEEEecCCCcE
Q 005646 354 SGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDD-NYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 354 ~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~-~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
-..|.-+.|..+. .|.....|+.|.+|++....-...+. ....+.++.|+| ++ .+|.+...|-+|.+|.+.+.+.
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECC-CcceEeeeecceeEEEEEEecccee
Confidence 3567788898888 45566788999999999988887777 778999999999 77 6667777899999999999988
Q ss_pred EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE--eC
Q 005646 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS--CA 507 (686)
Q Consensus 430 ~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~--s~ 507 (686)
......+..+..++|+|||++.+..+.-.....+++...+ ...+.+..+...-..+++.|+| +++.|++- .-
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~-----~W~ll~~f~~dT~DltgieWsP-dg~~laVwd~~L 200 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK-----AWILLKEFKLDTIDLTGIEWSP-DGNWLAVWDNVL 200 (447)
T ss_pred EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhH-----HHHHHHhcCCCcccccCceECC-CCcEEEEecchh
Confidence 7766667778999999999999988764332222222111 0001111222334578999999 67776663 34
Q ss_pred CCcEEEEeC---CcceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 508 DSQVRILQG---PNVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 508 D~~I~iwd~---~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+-.|..|+- ...+.++|.+++|+.|+.|+.+||-|--+
T Consensus 201 eykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 201 EYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred hheeeeeeeccceeEEEeccccceEEeeccchhhhhhceee
Confidence 566666664 34678999999999999999999866544
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-13 Score=136.04 Aligned_cols=228 Identities=12% Similarity=0.175 Sum_probs=167.2
Q ss_pred CCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCC
Q 005646 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (686)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (686)
.-.-..+.++.+|++|+.||.-|.|-.+|..++....++...+......++.....-.+ ...
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AV------------------AQK 190 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAV------------------AQK 190 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHh------------------hhh
Confidence 34456789999999999999999999999999999888876654222111111100000 000
Q ss_pred ceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCC
Q 005646 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDD 407 (686)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~ 407 (686)
....+ ++-.+..++.++.| ..|..|.|.|.. +|++++..|.++--|+.+|+.+..+. ..+.+..+.-+| -.
T Consensus 191 ~y~yv-----YD~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~N 263 (545)
T KOG1272|consen 191 KYVYV-----YDNNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YN 263 (545)
T ss_pred ceEEE-----ecCCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-cc
Confidence 01111 22223456666655 578999999999 88899999999999999999999888 778899999999 78
Q ss_pred CEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCC
Q 005646 408 NYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC 486 (686)
Q Consensus 408 ~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 486 (686)
..+-+|...|+|.+|.....+.+ .+..|.++|.+|++.++|+++|+.+.|..|+|||++.-.... .... .
T Consensus 264 aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~-------t~~t--p 334 (545)
T KOG1272|consen 264 AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH-------TYRT--P 334 (545)
T ss_pred ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc-------eeec--C
Confidence 89999999999999999887654 778899999999999999999999999999999998765221 1111 1
Q ss_pred CCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 005646 487 KRITGFQFLPQDSSKVMVSCADSQVRIL 514 (686)
Q Consensus 487 ~~I~~l~fsp~~~~~l~~~s~D~~I~iw 514 (686)
.+...++|+. .-+++.+....|.||
T Consensus 335 ~~a~~ls~Sq---kglLA~~~G~~v~iw 359 (545)
T KOG1272|consen 335 HPASNLSLSQ---KGLLALSYGDHVQIW 359 (545)
T ss_pred CCcccccccc---ccceeeecCCeeeee
Confidence 3356677776 334444444455555
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.3e-11 Score=114.19 Aligned_cols=188 Identities=18% Similarity=0.199 Sum_probs=134.2
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEE-eCCCcEEEEEeecCee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASA-GDDGVVRLWQVVEDER 284 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~I~vWd~~~~~~ 284 (686)
-++|+++|+++|+...- ++.|.|.... ++..++.. -..|.-|.|..|..+++.+ ..|+.|.+|++...+-
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tl--q~~qlf~c------ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETL--QLHQLFLC------LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW 83 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchh--hHHHHHHH------HHHhhheeeeccceeeeeeeeccceEEEEEeeccee
Confidence 57899999999998876 8888876543 22222211 3467788999888776654 6788999999987652
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
.. .+......+..+.|||
T Consensus 84 ~c--------------------------------------------------------------kIdeg~agls~~~WSP 101 (447)
T KOG4497|consen 84 YC--------------------------------------------------------------KIDEGQAGLSSISWSP 101 (447)
T ss_pred EE--------------------------------------------------------------EeccCCCcceeeeECC
Confidence 22 2233557889999999
Q ss_pred CC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC--------------------------
Q 005646 365 NN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID-------------------------- 416 (686)
Q Consensus 365 ~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D-------------------------- 416 (686)
+| .|.+...|-.|.+|.+.+.++...-.....+..++|+| ++++.+.++.-
T Consensus 102 dgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~D 180 (447)
T KOG4497|consen 102 DGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTID 180 (447)
T ss_pred CcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccc
Confidence 99 77788899999999999988766554455668899999 89888777542
Q ss_pred ----------CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeC
Q 005646 417 ----------GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 417 ----------g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~ 465 (686)
..+.+||-.-.-.+....-.-.+..+.|+|.++++++|+.|+.+|+.+-
T Consensus 181 ltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 181 LTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred ccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhce
Confidence 1233333221111112222356888999999999999999999998764
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-11 Score=135.35 Aligned_cols=208 Identities=15% Similarity=0.174 Sum_probs=137.5
Q ss_pred eeeecCCCccceeecc---ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe-CCCcEEEEEeecC
Q 005646 207 ERVRLNEEDAMFCSKV---QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-DDGVVRLWQVVED 282 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d---~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~vWd~~~~ 282 (686)
..++++++.++..+.+ ..|++|++....... ...+.+| ...++|+|||++|+.++ .+|.+.||.+...
T Consensus 209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-----l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~ 280 (429)
T PRK01742 209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-----VASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGAN 280 (429)
T ss_pred ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-----EecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECC
Confidence 4578889988887654 369999886543211 1123334 34689999999888765 6888777755321
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
. .....+..|...+....|
T Consensus 281 ~-------------------------------------------------------------~~~~~lt~~~~~~~~~~w 299 (429)
T PRK01742 281 G-------------------------------------------------------------GTPSQLTSGAGNNTEPSW 299 (429)
T ss_pred C-------------------------------------------------------------CCeEeeccCCCCcCCEEE
Confidence 1 012233445667788999
Q ss_pred eCCC-EEEEE-ECCCcEEEEECCCC-eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcE
Q 005646 363 SKNN-YLLSA-SIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIV 439 (686)
Q Consensus 363 s~~~-~L~s~-s~Dg~V~iWd~~~~-~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V 439 (686)
+|+| .|+.+ ..++..+||++... .....+.+.. .+..|+| ++++|+..+.++ +.+||+.+++...+... ...
T Consensus 300 SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~ 374 (429)
T PRK01742 300 SPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLD 374 (429)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCC
Confidence 9999 55544 46788899987542 2223334443 4678999 999998888765 56699998876544322 234
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEeCC--CCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 440 TAVCYRPDGQGGIVGSMMGDCRFYNVS--DNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 440 ~~v~~spdg~~l~~gs~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
..+.|+|||++|+.++.+|.+.+|++. ++.... ....|.+.+...+|+|
T Consensus 375 ~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~--------~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 375 ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA--------RLPGSDGQVKFPAWSP 425 (429)
T ss_pred CCceECCCCCEEEEEEcCCCceEEEEEECCCCceE--------EccCCCCCCCCcccCC
Confidence 568899999999999999988888753 232221 1223446678888888
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7e-11 Score=117.49 Aligned_cols=205 Identities=14% Similarity=0.193 Sum_probs=155.6
Q ss_pred ecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEee
Q 005646 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (686)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (686)
.....++|..++.. || .|++|-.+|.+.+|....+...
T Consensus 101 ~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~h---------------------------------------- 138 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLH---------------------------------------- 138 (412)
T ss_pred cccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccc----------------------------------------
Confidence 33456778888765 34 6888889999999998755411
Q ss_pred ccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECC--CcEEEEECCCCeeeeEee---------
Q 005646 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASID--KTVRLWRVGNDHCLRVFP--------- 392 (686)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~D--g~V~iWd~~~~~~~~~~~--------- 392 (686)
..++..+..+ ..+..|.-++.. .+++|+.. ..+.|||+.+.+.+..-.
T Consensus 139 ------------------ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 139 ------------------SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL 199 (412)
T ss_pred ------------------cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccc
Confidence 0122333333 445556555654 67779998 899999999886655433
Q ss_pred -CCCCeEEEEEeecC--CCEEEEEEcCCcEEEEecCCCc-EE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 393 -HSNYVTCVHFNPVD--DNYFISGSIDGKVRIWAVLSCH-VV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 393 -h~~~V~~v~fsp~~--~~~l~sgs~Dg~V~iwd~~~~~-~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
-.-.++.+.|-| . ...|++++.-+.||+||.+.++ .+ .+.-...+++++...|+|+.+++|...|.+..||++.
T Consensus 200 rVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~ 278 (412)
T KOG3881|consen 200 RVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG 278 (412)
T ss_pred eeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccC
Confidence 234578899998 5 7889999999999999998764 34 4444578899999999999999999999999999998
Q ss_pred CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 468 NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+++... ..++-.+.|.++..+| .+++|+++|-|..|||+|+++.+
T Consensus 279 ~kl~g~-------~~kg~tGsirsih~hp----------------------------~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 279 GKLLGC-------GLKGITGSIRSIHCHP----------------------------THPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred ceeecc-------ccCCccCCcceEEEcC----------------------------CCceEEeeccceeEEEeecccch
Confidence 876431 1344557799999999 78999999999999999999865
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.1e-11 Score=114.45 Aligned_cols=148 Identities=20% Similarity=0.376 Sum_probs=103.3
Q ss_pred eEEEeeCCC-E-EEEEEC--C-------CcEEEEECCC-CeeeeEee--CCCCeEEEEEeecCCCEEEEE--EcCCcEEE
Q 005646 358 LDLSWSKNN-Y-LLSASI--D-------KTVRLWRVGN-DHCLRVFP--HSNYVTCVHFNPVDDNYFISG--SIDGKVRI 421 (686)
Q Consensus 358 ~~l~~s~~~-~-L~s~s~--D-------g~V~iWd~~~-~~~~~~~~--h~~~V~~v~fsp~~~~~l~sg--s~Dg~V~i 421 (686)
..+.|+++| + ++.... | +...||.++. +.....+. ..++|.+++|+| +++.|++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 478899999 3 333331 2 3456666633 23344443 556799999999 88876554 46789999
Q ss_pred EecCCCcEEEEeccCCcEEEEEEccCCCEEEEEec---CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC
Q 005646 422 WAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM---MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (686)
Q Consensus 422 wd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~ 498 (686)
||++ ++.+..+. ...++.+.|+|+|++|++++. .|.+.+||+.+.+..... ....++.++|+|
T Consensus 88 yd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~----------~~~~~t~~~WsP-- 153 (194)
T PF08662_consen 88 YDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF----------EHSDATDVEWSP-- 153 (194)
T ss_pred EcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc----------ccCcEEEEEEcC--
Confidence 9997 44443333 467789999999999999875 467999999876654321 123478899999
Q ss_pred CCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeC------CCcEEEEeCCCC
Q 005646 499 SSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGE------DSNVYMWNCIGH 546 (686)
Q Consensus 499 ~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~------Dg~V~iWd~~~~ 546 (686)
||++|+++.. |+.++||++...
T Consensus 154 --------------------------dGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 154 --------------------------DGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred --------------------------CCCEEEEEEeccceeccccEEEEEecCe
Confidence 7777777753 788999998754
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.7e-10 Score=109.67 Aligned_cols=178 Identities=13% Similarity=0.206 Sum_probs=118.2
Q ss_pred cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEee-cCeeeeeeccCCCCCcceEE
Q 005646 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV-EDERLTEVDIPEIDPSCIYF 300 (686)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~-~~~~~~~~~~~~~~~~~~~~ 300 (686)
.+.|.|||-.+ .+.+.. + .-..+|.++.+.++ .|+..- .+.|.||.+. +.+.++.+.....+-..+..
T Consensus 74 pNkviIWDD~k-~~~i~e------l-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~ 142 (346)
T KOG2111|consen 74 PNKVIIWDDLK-ERCIIE------L-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSL 142 (346)
T ss_pred CceEEEEeccc-CcEEEE------E-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEee
Confidence 46899999322 222211 1 14578999999876 566664 4789999988 55556665544332222222
Q ss_pred eecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCc-EE
Q 005646 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKT-VR 378 (686)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~-V~ 378 (686)
.+.....+.+.-....+...+..+... ...+...+.+|...|.|++.+.+| ++||+|..|| ||
T Consensus 143 ~~~~~k~~LafPg~k~GqvQi~dL~~~---------------~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR 207 (346)
T KOG2111|consen 143 CPTSNKSLLAFPGFKTGQVQIVDLAST---------------KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIR 207 (346)
T ss_pred cCCCCceEEEcCCCccceEEEEEhhhc---------------CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence 221111111111111111111111100 001346778999999999999999 9999999998 79
Q ss_pred EEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC
Q 005646 379 LWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 379 iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~ 426 (686)
|||..++..+..+. ....|.||+|+| +..+|+++|..|+|.|+.++.
T Consensus 208 IFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 208 IFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence 99999999999998 567899999999 999999999999999998875
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-10 Score=125.97 Aligned_cols=176 Identities=19% Similarity=0.205 Sum_probs=116.3
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC---CcEEEEEeecCeeeeeeccCCCCCcceE
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~vWd~~~~~~~~~~~~~~~~~~~~~ 299 (686)
..+.++|.+... .+.+..|...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...
T Consensus 176 ~~L~~~D~dG~~--------~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~------------- 234 (427)
T PRK02889 176 YQLQISDADGQN--------AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV------------- 234 (427)
T ss_pred cEEEEECCCCCC--------ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-------------
Confidence 456666653322 13345678889999999999999887643 359999998765211
Q ss_pred EeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE-EEECCCcE
Q 005646 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDKTV 377 (686)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~-s~s~Dg~V 377 (686)
+....+.+...+|+|+| .|+ +.+.++..
T Consensus 235 --------------------------------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 264 (427)
T PRK02889 235 --------------------------------------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNS 264 (427)
T ss_pred --------------------------------------------------eecCCCCccceEECCCCCEEEEEEccCCCc
Confidence 11122345678999999 554 67778887
Q ss_pred EEEEC--CCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-CCcEEEEec--CCCcEEEEeccCCcEEEEEEccCCCEEE
Q 005646 378 RLWRV--GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAV--LSCHVVDWVDIRQIVTAVCYRPDGQGGI 452 (686)
Q Consensus 378 ~iWd~--~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~--~~~~~~~~~~~~~~V~~v~~spdg~~l~ 452 (686)
.||.+ ..+.......+...+....|+| |++.|+..+. +|...||.+ .++...............+|+|||++|+
T Consensus 265 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 265 QIYTVNADGSGLRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred eEEEEECCCCCcEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 77754 4444333223555667889999 8988776654 466666654 4555433332233345678999999998
Q ss_pred EEecCC---cEEEEeCCCCee
Q 005646 453 VGSMMG---DCRFYNVSDNHL 470 (686)
Q Consensus 453 ~gs~dg---~i~iwd~~~~~~ 470 (686)
..+.++ .|++||+.++..
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred EEEccCCcEEEEEEECCCCCe
Confidence 877654 599999987654
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-10 Score=125.34 Aligned_cols=175 Identities=17% Similarity=0.148 Sum_probs=124.3
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC---CcEEEEEeecCeeeeeeccCCCCCcceE
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~vWd~~~~~~~~~~~~~~~~~~~~~ 299 (686)
..|.+++..... .+.+..+...+...+|+|||++|+.+..+ ..|++||+.+++..
T Consensus 170 ~~l~~~d~~g~~--------~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-------------- 227 (417)
T TIGR02800 170 YELQVADYDGAN--------PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-------------- 227 (417)
T ss_pred ceEEEEcCCCCC--------CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE--------------
Confidence 356666654322 23455577789999999999999987654 47999998776421
Q ss_pred EeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE-EEECCC--
Q 005646 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDK-- 375 (686)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~-s~s~Dg-- 375 (686)
.+..+.+.+..++|+|++ .|+ +.+.++
T Consensus 228 -------------------------------------------------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 258 (417)
T TIGR02800 228 -------------------------------------------------KVASFPGMNGAPAFSPDGSKLAVSLSKDGNP 258 (417)
T ss_pred -------------------------------------------------EeecCCCCccceEECCCCCEEEEEECCCCCc
Confidence 111233455678999998 554 555444
Q ss_pred cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC-C--cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEE
Q 005646 376 TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID-G--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI 452 (686)
Q Consensus 376 ~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D-g--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~ 452 (686)
.|.+||+.+++......+........|+| +++.|+..+.. + .|.++|+.+++...+......+..+.|+|+|++++
T Consensus 259 ~i~~~d~~~~~~~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 259 DIYVMDLDGKQLTRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred cEEEEECCCCCEEECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEE
Confidence 58899998876655544555566789999 88888766643 3 58888988887666655566677889999999999
Q ss_pred EEecCC---cEEEEeCCCCe
Q 005646 453 VGSMMG---DCRFYNVSDNH 469 (686)
Q Consensus 453 ~gs~dg---~i~iwd~~~~~ 469 (686)
.++.++ .|.+||+.++.
T Consensus 338 ~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred EEEccCCceEEEEEeCCCCC
Confidence 988776 78899987654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.2e-11 Score=118.43 Aligned_cols=224 Identities=13% Similarity=0.192 Sum_probs=161.4
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCC--CcEEEEEeecC
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDD--GVVRLWQVVED 282 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~D--g~I~vWd~~~~ 282 (686)
+......+..+++|-.+|.+.+|..+.....-..+ ..+..| ..+..|.-++. ...+|+||.. ..+.|||+.+.
T Consensus 108 I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l---~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~ 183 (412)
T KOG3881|consen 108 IKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKL---IKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS 183 (412)
T ss_pred ccchhhcCCEEEEEecCCcEEEEeccCCccccccc---eeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc
Confidence 34445566788899999999999887433211111 122223 45666666664 4466779998 88999999887
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
+.+..-+....+.-. -. -.-.++++.|
T Consensus 184 ~qiw~aKNvpnD~L~-----------------------------------------------Lr------VPvW~tdi~F 210 (412)
T KOG3881|consen 184 KQIWSAKNVPNDRLG-----------------------------------------------LR------VPVWITDIRF 210 (412)
T ss_pred eeeeeccCCCCcccc-----------------------------------------------ce------eeeeecccee
Confidence 543322211100000 00 1124567777
Q ss_pred eCC--C-EEEEEECCCcEEEEECCCC-eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE--EEecc
Q 005646 363 SKN--N-YLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDI 435 (686)
Q Consensus 363 s~~--~-~L~s~s~Dg~V~iWd~~~~-~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~ 435 (686)
-+. . .|++++.-+.||+||.+.+ +++..|. ...+|+++...| +++++++|..-|.+..||++++++. .+.+.
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCc
Confidence 766 4 9999999999999999865 5677777 788999999999 9999999999999999999999887 35678
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
.+.|++|..+|.++++++++-|..+||||+.+.++....- -...++++-+.+
T Consensus 290 tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY---------vKs~lt~il~~~ 341 (412)
T KOG3881|consen 290 TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY---------VKSRLTFILLRD 341 (412)
T ss_pred cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh---------hhccccEEEecC
Confidence 8999999999999999999999999999999876543211 123466776665
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-10 Score=109.98 Aligned_cols=157 Identities=14% Similarity=0.231 Sum_probs=118.3
Q ss_pred CCCCeeEEEeeCCCEEEEEECCCcEEEEECC-CCeeeeEee---CCCCeEEEEEeec-CCCEEEE-EEcCCcEEEEecCC
Q 005646 353 HSGEILDLSWSKNNYLLSASIDKTVRLWRVG-NDHCLRVFP---HSNYVTCVHFNPV-DDNYFIS-GSIDGKVRIWAVLS 426 (686)
Q Consensus 353 h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~-~~~~~~~~~---h~~~V~~v~fsp~-~~~~l~s-gs~Dg~V~iwd~~~ 426 (686)
-..+|.++.+.++. |+.. ....|.||... ..+.++.+. .+..+-+ ..|. +..+|+. |-.-|.|+|-|+..
T Consensus 93 f~~~I~~V~l~r~r-iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~--~~~~~~k~~LafPg~k~GqvQi~dL~~ 168 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDR-IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCS--LCPTSNKSLLAFPGFKTGQVQIVDLAS 168 (346)
T ss_pred eccceeeEEEcCCe-EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEe--ecCCCCceEEEcCCCccceEEEEEhhh
Confidence 45688999988775 2222 36789999987 455666655 3334333 3342 3334443 34569999999987
Q ss_pred CcE---EEEeccCCcEEEEEEccCCCEEEEEecCCc-EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE
Q 005646 427 CHV---VDWVDIRQIVTAVCYRPDGQGGIVGSMMGD-CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (686)
Q Consensus 427 ~~~---~~~~~~~~~V~~v~~spdg~~l~~gs~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l 502 (686)
.+. .....|...|.+++.+.+|..+|+++..|+ |||||..++.+..+.. .......|.+++|+|
T Consensus 169 ~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R------RG~d~A~iy~iaFSp------ 236 (346)
T KOG2111|consen 169 TKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR------RGVDRADIYCIAFSP------ 236 (346)
T ss_pred cCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee------cCCchheEEEEEeCC------
Confidence 665 678899999999999999999999999998 8999999998776432 233446799999999
Q ss_pred EEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 503 MVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 503 ~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
|..+|+++|+-|+|+|+.+....
T Consensus 237 ----------------------~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 237 ----------------------NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ----------------------CccEEEEEcCCCeEEEEEeecCC
Confidence 88999999999999999988754
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-10 Score=124.73 Aligned_cols=208 Identities=12% Similarity=0.103 Sum_probs=133.9
Q ss_pred eeeecCCCccceee---ccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEE-eCCC--cEEEEEee
Q 005646 207 ERVRLNEEDAMFCS---KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASA-GDDG--VVRLWQVV 280 (686)
Q Consensus 207 ~~~s~~~~~l~~g~---~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg--~I~vWd~~ 280 (686)
-+++++|+.++..+ ....+.+|++...... .+....+.+...+|+|||++|+.. +.+| .|.+||+.
T Consensus 204 p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~--------~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 204 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--------QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE--------EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 45788888887654 2356888887653221 112223334568999999988765 4455 47788887
Q ss_pred cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
+++. ..+..+...+...
T Consensus 276 tg~~---------------------------------------------------------------~~lt~~~~~~~~~ 292 (429)
T PRK03629 276 SGQI---------------------------------------------------------------RQVTDGRSNNTEP 292 (429)
T ss_pred CCCE---------------------------------------------------------------EEccCCCCCcCce
Confidence 6542 1112233456788
Q ss_pred EeeCCC-EEEEEEC-CCcEEEE--ECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC---CcEEEEecCCCcEEEEe
Q 005646 361 SWSKNN-YLLSASI-DKTVRLW--RVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---GKVRIWAVLSCHVVDWV 433 (686)
Q Consensus 361 ~~s~~~-~L~s~s~-Dg~V~iW--d~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D---g~V~iwd~~~~~~~~~~ 433 (686)
.|+|+| .|+..+. ++...|| |+.++.......+.....+..|+| ++++|+..+.+ ..|.+||+.++....+.
T Consensus 293 ~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 293 TWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQVLT 371 (429)
T ss_pred EECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCCCCeEEeC
Confidence 999999 6766664 3444555 666665443333555667899999 99888776644 35888999988765544
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCc---EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGD---CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
.. .......|+|||++|+.++.++. +.++++....... ...+...+...+|+|
T Consensus 372 ~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~---------l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 372 DT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR---------LPATDGQVKFPAWSP 427 (429)
T ss_pred CC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEE---------CccCCCCcCCcccCC
Confidence 32 23456789999999999888765 6777775443221 122445677778877
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=124.03 Aligned_cols=291 Identities=15% Similarity=0.200 Sum_probs=199.9
Q ss_pred CeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecC-CCEEEEEEcCCcEEE
Q 005646 346 PLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVD-DNYFISGSIDGKVRI 421 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~-~~~l~sgs~Dg~V~i 421 (686)
....|.+|.+-|..+.|+..| .|+++|.|..|.+||...++....|. |...|....|-|.. ..-+++++.||.||+
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 345678899999999999999 99999999999999999998887776 98889888898853 457899999999999
Q ss_pred EecCCCcE----EEEeccCCcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 422 WAVLSCHV----VDWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 422 wd~~~~~~----~~~~~~~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
=.+..... .....|.++|..++.-|+. .-|.+++.|+.+.-+|++.+....... .........-....++..|
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~--cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV--CREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee--eeccCCccceeeeeEecCC
Confidence 87754332 2566789999999999965 457889999999999998765433221 1111111123578899999
Q ss_pred CCCCeEEEEeCCCcEEEEeCC---------------------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCCC-
Q 005646 497 QDSSKVMVSCADSQVRILQGP---------------------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEE- 548 (686)
Q Consensus 497 ~~~~~l~~~s~D~~I~iwd~~---------------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~- 548 (686)
.+...+++++.|..+|+||.. ++++++.++.-|.+.-.|-.||+++-.-+..
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 888899999999999999854 2345554666666666788899995443321
Q ss_pred -CCccccc--ccc-ccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCC
Q 005646 549 -PAHDQAK--TIR-SLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWP 624 (686)
Q Consensus 549 -~~~~~~~--~~~-~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~ 624 (686)
+.....+ -+. .|.++.+.. .-..+-.|-|- ..+++++|.++.+-+|.
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~-------------------------TVKgVNFfGPr----sEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSR-------------------------TVKGVNFFGPR----SEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCCCCcchhhccchhhccccccc-------------------------ccceeeeccCc----cceEEecCccceEEEEe
Confidence 1111100 000 011111100 00112235564 56777899999999999
Q ss_pred CCcCCCccccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 625 EEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
..+...+.-. .+ ++. ..+| ..+|++-=+|||.|-|--||||--
T Consensus 423 K~t~eii~~M---eg-Dr~-------VVNC-LEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 423 KKTGEIIRFM---EG-DRH-------VVNC-LEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred cchhHHHHHh---hc-ccc-------eEec-cCCCCCCchhhccCCccceeeecC
Confidence 6655421110 00 101 1122 256888889999999999999954
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-09 Score=113.41 Aligned_cols=296 Identities=16% Similarity=0.204 Sum_probs=186.9
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEE-----eC-----CCcEEE
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASA-----GD-----DGVVRL 276 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-----s~-----Dg~I~v 276 (686)
..++.+|.. ..-+.++.++|++....... +.--...+.++.|+|-|.||.|- -. ...+++
T Consensus 40 ~~~S~~G~l-fA~~~~~~v~i~~~~~~~~~---------lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v 109 (566)
T KOG2315|consen 40 FAYSNNGRL-FAYSDNQVVKVFEIATLKVV---------LCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLV 109 (566)
T ss_pred EEEcCCCcE-EEEEcCCeEEEEEccCCcEE---------EEeccceeeeeeecccccccccccccccccCCCCCCCceee
Confidence 344444444 44566778999987654311 11112268999999999999873 11 245779
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
|++.++.....+.......++..|+.+....... .......+....++ .+.+.+ |...
T Consensus 110 ~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-----------------v~nev~f~~~~~f~---~~~~kl--~~~~ 167 (566)
T KOG2315|consen 110 YNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-----------------VSNEVQFYDLGSFK---TIQHKL--SVSG 167 (566)
T ss_pred eeeccceehhheehhhhcCcccccccchhhhhhh-----------------hcceEEEEecCCcc---ceeeee--eccc
Confidence 9999966555555544444444444433211100 00111111111111 122222 5678
Q ss_pred eeEEEeeCCC---EEEE-----EECCCcEEEEECCCCeeee-----EeeCCCCeEEEEEeecCCCEEEEEEc--------
Q 005646 357 ILDLSWSKNN---YLLS-----ASIDKTVRLWRVGNDHCLR-----VFPHSNYVTCVHFNPVDDNYFISGSI-------- 415 (686)
Q Consensus 357 V~~l~~s~~~---~L~s-----~s~Dg~V~iWd~~~~~~~~-----~~~h~~~V~~v~fsp~~~~~l~sgs~-------- 415 (686)
|..+.+||.. .+++ .+.-..|+||.......-. .|-..+. ..+.|++....+|+..+.
T Consensus 168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadk-vqm~WN~~gt~LLvLastdVDktn~S 246 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADK-VQMKWNKLGTALLVLASTDVDKTNAS 246 (566)
T ss_pred eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccce-eEEEeccCCceEEEEEEEeecCCCcc
Confidence 8999999974 4543 4566789999987332222 2222333 346777733344444443
Q ss_pred ---CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEE--EecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeE
Q 005646 416 ---DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV--GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (686)
Q Consensus 416 ---Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~--gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~ 490 (686)
..++++.++....+..-....++|.+++|+|+|+.+++ |-+--.+.|||++..- .. ....++-+
T Consensus 247 YYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~-v~----------df~egpRN 315 (566)
T KOG2315|consen 247 YYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP-VF----------DFPEGPRN 315 (566)
T ss_pred ccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-eE----------eCCCCCcc
Confidence 24688888886666666667899999999999987665 6667889999997543 22 12336678
Q ss_pred EEEEeCCCCCeEEEEeCC---CcEEEEeCCc-------------ceeEcCCCCEEEEEeC------CCcEEEEeCCCCC
Q 005646 491 GFQFLPQDSSKVMVSCAD---SQVRILQGPN-------------VIGKYKDGKHIVSAGE------DSNVYMWNCIGHE 547 (686)
Q Consensus 491 ~l~fsp~~~~~l~~~s~D---~~I~iwd~~~-------------~~~~~~dg~~l~sgs~------Dg~V~iWd~~~~~ 547 (686)
++-|+| .+.+++.++-+ |.|-|||..+ ...|+|||++|+|+.. |+.++||++....
T Consensus 316 ~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 316 TAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred ceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 899999 77877777654 8999999753 4679999999999874 7899999998754
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.2e-11 Score=114.99 Aligned_cols=290 Identities=15% Similarity=0.233 Sum_probs=171.6
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccC------------CceEEEEEeeCCC--EEEEEeCC
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHD------------GSILTMKFSPDGQ--YLASAGDD 271 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~------------~~I~~l~fspdg~--~Lasgs~D 271 (686)
...|...|++|++|..+|+|.++.-.+..+. ...-..+++.|. ..|..+.|.++++ .++..+.|
T Consensus 30 ~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd 107 (433)
T KOG1354|consen 30 AVEFDHYGERLATGDKGGRVVLFEREKLYKG--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND 107 (433)
T ss_pred eEEeecccceEeecCCCCeEEEeeccccccc--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence 4567789999999999999999986554431 111122344454 4689999998654 56667789
Q ss_pred CcEEEEEeecCeeee-eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe
Q 005646 272 GVVRLWQVVEDERLT-EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (686)
Q Consensus 272 g~I~vWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (686)
.+|++|.+....... ....+... ....+..+-. - .-+..+..+.. .|.+.+
T Consensus 108 ktiKlWKi~er~~k~~~~~~~~~~---------~~~~~~~lr~--------p-~~~~~~~~vea----------~prRv~ 159 (433)
T KOG1354|consen 108 KTIKLWKIRERGSKKEGYNLPEEG---------PPGTITSLRL--------P-VEGRHDLEVEA----------SPRRVY 159 (433)
T ss_pred cceeeeeeeccccccccccccccC---------CCCccceeec--------e-eeccccceeee----------eeeeec
Confidence 999999987644222 11111100 0000000000 0 00000111111 233333
Q ss_pred -ccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCC-CeeeeEe--e-C-----CCCeEEEEEeecCCCEEEEEEcCCcEE
Q 005646 351 -HGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGN-DHCLRVF--P-H-----SNYVTCVHFNPVDDNYFISGSIDGKVR 420 (686)
Q Consensus 351 -~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~-~~~~~~~--~-h-----~~~V~~v~fsp~~~~~l~sgs~Dg~V~ 420 (686)
.+|+--|.+++++.|+..+.++.|=.|.+|++.- .++.... . + ..-|++..|+|...+.|+-.+..|+||
T Consensus 160 aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 160 ANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred cccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 3799999999999999444455688999999873 3332222 1 2 346899999998888999999999999
Q ss_pred EEecCCCcEEE----Ee-------------ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe-eeeeeeEEeeccc
Q 005646 421 IWAVLSCHVVD----WV-------------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH-LELDAEICVHSKK 482 (686)
Q Consensus 421 iwd~~~~~~~~----~~-------------~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~-~~~~~~~~~~~~~ 482 (686)
+-|++...+-. ++ ..-..|..+.|+++|+++++-.. -+|++||+.... ..... .++...
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~--~vh~~l 316 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETY--PVHEYL 316 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEE--eehHhH
Confidence 99999543211 11 11234788999999999997543 589999995433 22111 111111
Q ss_pred cCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 483 ~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+. .|...-.... |+| .-.++++-++.+++||+....++++++..+.
T Consensus 317 r~----------------kLc~lYEnD~--Ifd-KFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 317 RS----------------KLCSLYENDA--IFD-KFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HH----------------HHHHHhhccc--hhh-eeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 00 0000000000 000 0012333478899999999999999977665
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-09 Score=114.45 Aligned_cols=255 Identities=16% Similarity=0.170 Sum_probs=157.0
Q ss_pred ceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCc
Q 005646 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPS 296 (686)
Q Consensus 217 ~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~ 296 (686)
++-..++.|.|.|...... ..++..+...-..+.|+|||+++++++.||.|.++|+.+.+.+.++..
T Consensus 10 V~~~~~~~v~viD~~t~~~-------~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~------ 76 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKV-------VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV------ 76 (369)
T ss_dssp EEEGGGTEEEEEETTT-SE-------EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-------
T ss_pred EEecCCCEEEEEECCCCeE-------EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec------
Confidence 4566789999998765322 123433333334578999999999999999999999999886554432
Q ss_pred ceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEE-ECC
Q 005646 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA-SID 374 (686)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~-s~D 374 (686)
......++++++| +++++ ..+
T Consensus 77 ---------------------------------------------------------G~~~~~i~~s~DG~~~~v~n~~~ 99 (369)
T PF02239_consen 77 ---------------------------------------------------------GGNPRGIAVSPDGKYVYVANYEP 99 (369)
T ss_dssp ---------------------------------------------------------SSEEEEEEE--TTTEEEEEEEET
T ss_pred ---------------------------------------------------------CCCcceEEEcCCCCEEEEEecCC
Confidence 2245789999999 66655 578
Q ss_pred CcEEEEECCCCeeeeEeeC--------CCCeEEEEEeecCCCEEEEEEcC-CcEEEEecCCCcE--EEEeccCCcEEEEE
Q 005646 375 KTVRLWRVGNDHCLRVFPH--------SNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHV--VDWVDIRQIVTAVC 443 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~h--------~~~V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~~--~~~~~~~~~V~~v~ 443 (686)
+.+.++|..+.+.++.+.- ...+..|..+| ....++..-.| +.|.+.|...... ..............
T Consensus 100 ~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~ 178 (369)
T PF02239_consen 100 GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGG 178 (369)
T ss_dssp TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEE
T ss_pred CceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccc
Confidence 9999999999999988761 24678888888 66766665554 8888888876543 35556667788999
Q ss_pred EccCCCEEEEE-ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC---------CCeEEEEeCCCcEEE
Q 005646 444 YRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD---------SSKVMVSCADSQVRI 513 (686)
Q Consensus 444 ~spdg~~l~~g-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~---------~~~l~~~s~D~~I~i 513 (686)
|+|++++++++ ..++.|-++|..++++...... ....|..++..+ .+|.. +...+..-....+.+
T Consensus 179 ~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~----g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v 253 (369)
T PF02239_consen 179 FDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT----GKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSV 253 (369)
T ss_dssp E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-----SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-
T ss_pred cCcccceeeecccccceeEEEeeccceEEEEeec----cccccccccccc-cCCCcceEEeeccccceecccccCCcccc
Confidence 99999988765 5577899999998877543221 223333444433 23311 122212222223333
Q ss_pred EeCCc--------------ceeEcCCCCEEEEE----eCCCcEEEEeCCCCC
Q 005646 514 LQGPN--------------VIGKYKDGKHIVSA----GEDSNVYMWNCIGHE 547 (686)
Q Consensus 514 wd~~~--------------~~~~~~dg~~l~sg----s~Dg~V~iWd~~~~~ 547 (686)
|+..+ .+..+|++++|... ...++|.|+|.++.+
T Consensus 254 ~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 254 HDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK 305 (369)
T ss_dssp STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE
T ss_pred chhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcc
Confidence 43221 35678999999998 455899999998854
|
... |
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=125.24 Aligned_cols=286 Identities=12% Similarity=0.109 Sum_probs=178.4
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.-..++.+|.+++.|+.-|.+-.+|+.+...... +. -...|.++.|-.+.+++|.+- ...+.|||-..-+.
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E-------i~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtEl 203 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE-------IN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTEL 203 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeee-------ee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcEE
Confidence 3356777899999999999999998876543211 11 124566777766666666663 35677777655442
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
...-.. .....+.|.+.+.-. +..+..+......+.. ++.+..+..-.+.+..|.-+|
T Consensus 204 HClk~~--~~v~rLeFLPyHfLL---~~~~~~G~L~Y~DVS~-----------------GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 204 HCLKRH--IRVARLEFLPYHFLL---VAASEAGFLKYQDVST-----------------GKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred eehhhc--Cchhhhcccchhhee---eecccCCceEEEeech-----------------hhhhHHHHccCCccchhhcCC
Confidence 211110 011112222222110 0111111111111110 134455555677888888899
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEE
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAV 442 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v 442 (686)
-+ .+-+|...|+|.+|......++..+. |.++|.+|++.+ +|.|++|.+.|..|+|||+++...+.......+...+
T Consensus 262 ~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~l 340 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNL 340 (545)
T ss_pred ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeecCCCcccc
Confidence 88 88899999999999999988876665 999999999999 9999999999999999999988766544446778889
Q ss_pred EEccCCCEEEEEecCCcEEEEeCC-CCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCccee
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVS-DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG 521 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~ 521 (686)
++|..| +|| .+....|.||.-. .+...... ... ...-...|.++.|+| -...|-+|-..|-
T Consensus 341 s~Sqkg-lLA-~~~G~~v~iw~d~~~~s~~~~~--pYm--~H~~~~~V~~l~FcP-~EDvLGIGH~~G~----------- 402 (545)
T KOG1272|consen 341 SLSQKG-LLA-LSYGDHVQIWKDALKGSGHGET--PYM--NHRCGGPVEDLRFCP-YEDVLGIGHAGGI----------- 402 (545)
T ss_pred cccccc-cee-eecCCeeeeehhhhcCCCCCCc--chh--hhccCcccccceecc-HHHeeeccccCCc-----------
Confidence 998776 344 4455679999532 21101000 011 111234799999999 5566666655442
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCC
Q 005646 522 KYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 522 ~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
...|+=|+.+-+.--|..+
T Consensus 403 ----tsilVPGsGePN~Ds~e~n 421 (545)
T KOG1272|consen 403 ----TSILVPGSGEPNYDSLEDN 421 (545)
T ss_pred ----eeEeccCCCCCCcchhccC
Confidence 3456777777665555543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.3e-10 Score=122.09 Aligned_cols=188 Identities=14% Similarity=0.171 Sum_probs=125.1
Q ss_pred eeecCCCccceeec---cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEE-EEeCCC--cEEEEEeec
Q 005646 208 RVRLNEEDAMFCSK---VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLA-SAGDDG--VVRLWQVVE 281 (686)
Q Consensus 208 ~~s~~~~~l~~g~~---d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg--~I~vWd~~~ 281 (686)
.++++++.++..+. ...|.+|++..... +.+..+.+...+.+|+|||+.|+ +.+.+| .|.+||+.+
T Consensus 210 ~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~ 281 (433)
T PRK04922 210 AWSPDGKKLAYVSFERGRSAIYVQDLATGQR--------ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS 281 (433)
T ss_pred cCCCCCCEEEEEecCCCCcEEEEEECCCCCE--------EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC
Confidence 46788888887663 34688898765432 12333444556889999999775 455555 588888876
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
++. ..+..|.......+
T Consensus 282 g~~---------------------------------------------------------------~~lt~~~~~~~~~~ 298 (433)
T PRK04922 282 RQL---------------------------------------------------------------TRLTNHFGIDTEPT 298 (433)
T ss_pred CCe---------------------------------------------------------------EECccCCCCccceE
Confidence 541 12223444456789
Q ss_pred eeCCC-EEEEEE-CCCc--EEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCC---cEEEEecCCCcEEEEec
Q 005646 362 WSKNN-YLLSAS-IDKT--VRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG---KVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 362 ~s~~~-~L~s~s-~Dg~--V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg---~V~iwd~~~~~~~~~~~ 434 (686)
|+|+| .|+.++ .++. |.++|+.+++......+......++|+| ++++|+..+.++ .|.+||+.+++...+.
T Consensus 299 ~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt- 376 (433)
T PRK04922 299 WAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT- 376 (433)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEECCCCceeEEEEECCCCCeEECC-
Confidence 99999 676655 3444 6666776766544333445566789999 999888766443 5999999888766443
Q ss_pred cCCcEEEEEEccCCCEEEEEecC---CcEEEEeCCCC
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMM---GDCRFYNVSDN 468 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~d---g~i~iwd~~~~ 468 (686)
+........|+|||++++..+.+ +.+.++++...
T Consensus 377 ~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 377 PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 22344567999999988877653 35777787543
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-10 Score=127.03 Aligned_cols=146 Identities=25% Similarity=0.401 Sum_probs=120.3
Q ss_pred ecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005646 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (686)
Q Consensus 210 s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~ 289 (686)
+.+.-++++|+.-+.|.+|......+. ..+.+|++.|..+.|+.||+|++|.|+|.++|+|++.+.+..
T Consensus 142 s~~~~~i~~gsv~~~iivW~~~~dn~p-------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~---- 210 (967)
T KOG0974|consen 142 SAEELYIASGSVFGEIIVWKPHEDNKP-------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL---- 210 (967)
T ss_pred cCcEEEEEeccccccEEEEeccccCCc-------ceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc----
Confidence 344457889999999999987633222 247899999999999999999999999999999999887621
Q ss_pred cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEE
Q 005646 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL 369 (686)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~ 369 (686)
....-+|+..|..+.+.|+ .++
T Consensus 211 ---------------------------------------------------------~~~~fgHsaRvw~~~~~~n-~i~ 232 (967)
T KOG0974|consen 211 ---------------------------------------------------------GCTGFGHSARVWACCFLPN-RII 232 (967)
T ss_pred ---------------------------------------------------------CcccccccceeEEEEeccc-eeE
Confidence 1233479999999999998 999
Q ss_pred EEECCCcEEEEECCCCeeeeEee-C-CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC
Q 005646 370 SASIDKTVRLWRVGNDHCLRVFP-H-SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 370 s~s~Dg~V~iWd~~~~~~~~~~~-h-~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~ 426 (686)
|++.|.+.++|+....+ +.++. | ...+..++..+ +....+|++.|+.+++||+..
T Consensus 233 t~gedctcrvW~~~~~~-l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 233 TVGEDCTCRVWGVNGTQ-LEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EeccceEEEEEecccce-ehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence 99999999999765444 34555 4 46799999998 888999999999999999864
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-09 Score=111.24 Aligned_cols=268 Identities=17% Similarity=0.199 Sum_probs=175.6
Q ss_pred ceeeecCCCcc-ceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 206 GERVRLNEEDA-MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 206 ~~~~s~~~~~l-~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
-..++++|+++ ++|..--.|++||+......+.... -...|.-.-.+.|-..++---.|.+|-+..-- | .
T Consensus 56 ~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------Dae~V~feiLsDD~SK~v~L~~DR~IefHak~-G-~ 126 (703)
T KOG2321|consen 56 RIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------DAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-G-R 126 (703)
T ss_pred eeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------cccceeEEEeccchhhheEeecCceeeehhhc-C-e
Confidence 35667888864 6788889999999876544333211 12344444445554445555667777765421 1 1
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCcccccc---CCCeEEeccCCCCeeEEE
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL---EKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~h~~~V~~l~ 361 (686)
...+.++...- . +..-..+.+..+......++++. +..+..|....+.++++.
T Consensus 127 hy~~RIP~~GR---D---------------------m~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~ 182 (703)
T KOG2321|consen 127 HYRTRIPKFGR---D---------------------MKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVS 182 (703)
T ss_pred eeeeecCcCCc---c---------------------ccccCCCccEEEeecCcceEEEEccccccccccccccccceeee
Confidence 22222221100 0 00001111122222222333332 234555666778999999
Q ss_pred eeCCC-EEEEEECCCcEEEEECCCCeeeeEee-------CCC-----CeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 362 WSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-------HSN-----YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 362 ~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-------h~~-----~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
.++-+ +|++|+.+|.|..||.++...+..+. |.+ .|+++.|+. ++-.+++|..+|.|.|||+++.+
T Consensus 183 in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 183 INEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred ecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCC
Confidence 99977 88889999999999999887666654 333 399999997 79999999999999999999998
Q ss_pred EEEEeccC--CcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE
Q 005646 429 VVDWVDIR--QIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (686)
Q Consensus 429 ~~~~~~~~--~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~ 505 (686)
.+...+|. -+|..+.|.+.+ +-.++......++|||-.+++.....+ +...++.+++-| ++.+++++
T Consensus 262 pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE---------pt~~lND~C~~p-~sGm~f~A 331 (703)
T KOG2321|consen 262 PLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE---------PTSDLNDFCFVP-GSGMFFTA 331 (703)
T ss_pred ceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc---------ccCCcCceeeec-CCceEEEe
Confidence 88766664 578889997753 333444466789999998887654222 235599999999 88899999
Q ss_pred eCCCcEEEEeCC
Q 005646 506 CADSQVRILQGP 517 (686)
Q Consensus 506 s~D~~I~iwd~~ 517 (686)
-.++.+..|-.+
T Consensus 332 ne~~~m~~yyiP 343 (703)
T KOG2321|consen 332 NESSKMHTYYIP 343 (703)
T ss_pred cCCCcceeEEcc
Confidence 998888877644
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.8e-08 Score=104.05 Aligned_cols=258 Identities=15% Similarity=0.209 Sum_probs=167.1
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC----CCcEEEEEeecC-eeeeeeccCCCCCcc
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD----DGVVRLWQVVED-ERLTEVDIPEIDPSC 297 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~----Dg~I~vWd~~~~-~~~~~~~~~~~~~~~ 297 (686)
+.|.+|+++.....+..... + .-......|+++|++++|.++.+ ++.|..|.+... ..+..
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~---~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~---------- 78 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQT---V-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL---------- 78 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEE---E-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE----------
T ss_pred CcEEEEEEcCCCCCceEeee---e-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE----------
Confidence 78999988555444433221 1 13345667889999999999877 468888888764 11111
Q ss_pred eEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEE-CCC
Q 005646 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS-IDK 375 (686)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s-~Dg 375 (686)
+............++++|++ +|+++. .++
T Consensus 79 -------------------------------------------------~~~~~~~g~~p~~i~~~~~g~~l~vany~~g 109 (345)
T PF10282_consen 79 -------------------------------------------------LNSVPSGGSSPCHIAVDPDGRFLYVANYGGG 109 (345)
T ss_dssp -------------------------------------------------EEEEEESSSCEEEEEECTTSSEEEEEETTTT
T ss_pred -------------------------------------------------eeeeccCCCCcEEEEEecCCCEEEEEEccCC
Confidence 11111123345678899999 777766 589
Q ss_pred cEEEEECCC-Ceeee---EeeC-----------CCCeEEEEEeecCCCEEEEEEc-CCcEEEEecCCCc--EEE----Ee
Q 005646 376 TVRLWRVGN-DHCLR---VFPH-----------SNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLSCH--VVD----WV 433 (686)
Q Consensus 376 ~V~iWd~~~-~~~~~---~~~h-----------~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~~~~~--~~~----~~ 433 (686)
+|.++++.. +.... .+.| .....++.|+| +++++++... ...|++|++.... +.. ..
T Consensus 110 ~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 110 SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc
Confidence 999999987 43322 2212 35678999999 8888877653 3579999997654 322 22
Q ss_pred ccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCC--CCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE-eCCC
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVS--DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CADS 509 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~-s~D~ 509 (686)
........++|+|+|+++++.. .+++|.+|++. ++.+.....+...............+.++| ++++|.++ -..+
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~ 267 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSN 267 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTT
T ss_pred ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCC
Confidence 4456689999999999886654 47889999988 554444333332222111223688999999 66665554 4678
Q ss_pred cEEEEeCC-------------------cceeEcCCCCEEEEEe-CCCcEEEEeCCC
Q 005646 510 QVRILQGP-------------------NVIGKYKDGKHIVSAG-EDSNVYMWNCIG 545 (686)
Q Consensus 510 ~I~iwd~~-------------------~~~~~~~dg~~l~sgs-~Dg~V~iWd~~~ 545 (686)
.|.+|++. ..+.++|+|++|+++. .++.|.+|+++.
T Consensus 268 sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 268 SISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 89998862 1256788999999887 557899998854
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-09 Score=116.49 Aligned_cols=175 Identities=14% Similarity=0.119 Sum_probs=117.7
Q ss_pred eEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC---CcEEEEEeecCeeeeeeccCCCCCcceEE
Q 005646 224 RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSCIYF 300 (686)
Q Consensus 224 ~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~vWd~~~~~~~~~~~~~~~~~~~~~~ 300 (686)
.|.++|.+... .+.+..|...+...+|+|||++|+..+.+ ..|.+|++.+++...
T Consensus 180 ~l~~~d~~g~~--------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-------------- 237 (430)
T PRK00178 180 TLQRSDYDGAR--------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-------------- 237 (430)
T ss_pred EEEEECCCCCC--------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------
Confidence 46666655432 13455677889999999999999877644 358888887764211
Q ss_pred eecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE-EEECCC--c
Q 005646 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDK--T 376 (686)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~-s~s~Dg--~ 376 (686)
+....+.+....|+|+| .|+ +.+.++ .
T Consensus 238 -------------------------------------------------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 238 -------------------------------------------------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred -------------------------------------------------ccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 11122234468899999 555 555555 5
Q ss_pred EEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-CC--cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEE
Q 005646 377 VRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DG--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV 453 (686)
Q Consensus 377 V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~ 453 (686)
|.+||+.+++......+........|+| +++.|+..+. +| .|+++|+.+++...+...........|+|||+.++.
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 8888999887655444666677789999 8887766553 33 577788888776544332333456789999999988
Q ss_pred EecC-C--cEEEEeCCCCee
Q 005646 454 GSMM-G--DCRFYNVSDNHL 470 (686)
Q Consensus 454 gs~d-g--~i~iwd~~~~~~ 470 (686)
.+.+ + .|.+||+.++..
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred EEccCCceEEEEEECCCCCE
Confidence 7653 3 478889887654
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-09 Score=104.70 Aligned_cols=235 Identities=17% Similarity=0.168 Sum_probs=150.1
Q ss_pred ccceEEEEEcCCccccccccccCceecccCCceEEEEEee---CCC-EEEEEeCCCcEEEEEeecCeeeeeeccCCCCCc
Q 005646 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP---DGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPS 296 (686)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~-~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~ 296 (686)
..|++.+|++...... .+... ...-...+..|.|.. +|. .|+-+-.+|.|.++..........+..-..
T Consensus 44 R~Gkl~Lys~~d~~~~--~l~~~--q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--- 116 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLS--PLDTL--QCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--- 116 (339)
T ss_pred eccceEEEeecccccC--cccee--eeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch---
Confidence 4567888877643221 11111 112445688888875 455 567777889999998766554443332111
Q ss_pred ceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECC
Q 005646 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASID 374 (686)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~D 374 (686)
...... ....+.++..+...+.....+... ....+... -+.++.+++|.-+.+...|+... .+.+|+.|
T Consensus 117 -~ki~~~---~~lslD~~~~~~~i~vs~s~G~~~---~v~~t~~~--le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD 187 (339)
T KOG0280|consen 117 -KKISVV---EALSLDISTSGTKIFVSDSRGSIS---GVYETEMV--LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDD 187 (339)
T ss_pred -hhhhhe---eeeEEEeeccCceEEEEcCCCcEE---EEecceee--eeecccccccceeeeeeecccCCCceEEecCCC
Confidence 000000 112233333333333333222221 11111111 13456788999999999998765 89999999
Q ss_pred CcEEEEECC-CCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC-CCcEEEEeccCCcEEEEEEccCCC-
Q 005646 375 KTVRLWRVG-NDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-SCHVVDWVDIRQIVTAVCYRPDGQ- 449 (686)
Q Consensus 375 g~V~iWd~~-~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~-~~~~~~~~~~~~~V~~v~~spdg~- 449 (686)
+.+.-||++ .++++..-. |...|.+|.-+|..+.+++||+.|-.|++||.+ -++.+......+.|..++.+|--.
T Consensus 188 ~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~ 267 (339)
T KOG0280|consen 188 GSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFH 267 (339)
T ss_pred ceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhh
Confidence 999999999 455555533 999999999999889999999999999999999 466666666779999999999432
Q ss_pred EEEEEecCCcEEEEeCCCCeee
Q 005646 450 GGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 450 ~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
.++.++.-+-.+|-+.+.+...
T Consensus 268 ~lL~~CMh~G~ki~~~~~~~~e 289 (339)
T KOG0280|consen 268 RLLAACMHNGAKILDSSDKVLE 289 (339)
T ss_pred HHHHHHHhcCceEEEecccccc
Confidence 3333344445788888776654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-09 Score=104.55 Aligned_cols=245 Identities=13% Similarity=0.169 Sum_probs=150.1
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCcccccc-----ccccCcee--cccCCceEEEEEeeCCCEEEEEeC-CCcEEE
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELS-----ALYKGQEI--QAHDGSILTMKFSPDGQYLASAGD-DGVVRL 276 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~-----~~~~~~~l--~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~v 276 (686)
.+.++++.+...++.+--+-|.+|.......... .....+.+ .+| .+|++|.|.+||..|++++. |..|+|
T Consensus 144 tclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~i 222 (445)
T KOG2139|consen 144 TCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMI 222 (445)
T ss_pred eEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEE
Confidence 3456666665444444455589998754221111 11122223 355 79999999999999999986 578999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.++..+. +. .--.+.
T Consensus 223 Wdpdtg~~~p------------------------------------------------------------L~--~~glgg 240 (445)
T KOG2139|consen 223 WDPDTGQKIP------------------------------------------------------------LI--PKGLGG 240 (445)
T ss_pred EcCCCCCccc------------------------------------------------------------cc--ccCCCc
Confidence 9999887322 11 113467
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCC-CeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC-------
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGN-DHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC------- 427 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~-~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~------- 427 (686)
+.-|.|||++ +|+.+.-|+..++|+... -.+.+-.-..+.|...+|+| +|.+|+-... |.-++|.+.-.
T Consensus 241 ~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~~~~~ 318 (445)
T KOG2139|consen 241 FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSP-CGSFLLFACS-GSPRLYSLTFDGEDSVFL 318 (445)
T ss_pred eeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecC-CCCEEEEEEc-CCceEEEEeecCCCcccc
Confidence 8899999999 999999999999996543 33333333566999999999 7766554442 33455554210
Q ss_pred ------cEEEEe--------c----cCCcEEEEEEccCCCEEEEEecCCc--------EEEEeCCCCeeeeeeeEEeecc
Q 005646 428 ------HVVDWV--------D----IRQIVTAVCYRPDGQGGIVGSMMGD--------CRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 428 ------~~~~~~--------~----~~~~V~~v~~spdg~~l~~gs~dg~--------i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
+..-.. . .-+.+.+++|.|.|.++|+....+. |.+||.+..... +...-+.
T Consensus 319 ~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v---els~cg~ 395 (445)
T KOG2139|consen 319 RPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV---ELSYCGM 395 (445)
T ss_pred CcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce---EEEeccc
Confidence 000000 0 1356889999999999999755433 666776533221 1111122
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
..+..-...++.++..++.+|.++=..|.|.-|+..
T Consensus 396 i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 396 IGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 222222233444444456677777778888877653
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-09 Score=119.39 Aligned_cols=189 Identities=19% Similarity=0.204 Sum_probs=123.6
Q ss_pred eeeecCCCccceeecc---ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEE-EEeCCCcEEEEEeecC
Q 005646 207 ERVRLNEEDAMFCSKV---QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLA-SAGDDGVVRLWQVVED 282 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d---~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~I~vWd~~~~ 282 (686)
.+++++++.++..+.. ..|.+|++..... ..+....+.+.+.+|+|||+.|+ +.+.++...||.+...
T Consensus 201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--------RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred ceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--------EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 3577888888876643 3588888765432 11223345567899999999886 5677888888876431
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
. .....+..|...+....|
T Consensus 273 ~-------------------------------------------------------------~~~~~lt~~~~~~~~~~w 291 (427)
T PRK02889 273 G-------------------------------------------------------------SGLRRLTQSSGIDTEPFF 291 (427)
T ss_pred C-------------------------------------------------------------CCcEECCCCCCCCcCeEE
Confidence 1 011223334445567789
Q ss_pred eCCC-EEEEEEC-CCcEEEEEC--CCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCC---cEEEEecCCCcEEEEecc
Q 005646 363 SKNN-YLLSASI-DKTVRLWRV--GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG---KVRIWAVLSCHVVDWVDI 435 (686)
Q Consensus 363 s~~~-~L~s~s~-Dg~V~iWd~--~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg---~V~iwd~~~~~~~~~~~~ 435 (686)
+|+| .|+..+. ++...||.+ .++.......+.......+|+| ++++|+..+.++ .|.+||+.+++...+...
T Consensus 292 SpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~ 370 (427)
T PRK02889 292 SPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATGQVTALTDT 370 (427)
T ss_pred cCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCCCeEEccCC
Confidence 9999 6665553 566677755 4444333322344455789999 999988777654 599999998876654432
Q ss_pred CCcEEEEEEccCCCEEEEEecCC---cEEEEeCC
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMG---DCRFYNVS 466 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg---~i~iwd~~ 466 (686)
.......|+|||+.|+.++.++ .+++.++.
T Consensus 371 -~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 371 -TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred -CCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 3346789999999988877644 25555553
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-09 Score=119.57 Aligned_cols=191 Identities=11% Similarity=0.099 Sum_probs=129.0
Q ss_pred eeeecCCCccceeec---cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEE-EEeCCCc--EEEEEee
Q 005646 207 ERVRLNEEDAMFCSK---VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLA-SAGDDGV--VRLWQVV 280 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~---d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~--I~vWd~~ 280 (686)
.+++++++.++..+. +..|.+|++..... +.+..+.+.+...+|+|||+.|+ +.+.++. |.+||+.
T Consensus 207 p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 278 (435)
T PRK05137 207 PRFSPNRQEITYMSYANGRPRVYLLDLETGQR--------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR 278 (435)
T ss_pred eEECCCCCEEEEEEecCCCCEEEEEECCCCcE--------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence 456788888887653 46899998865432 23445667788999999998775 5566665 5555665
Q ss_pred cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
++.. ..+..+.......
T Consensus 279 ~~~~---------------------------------------------------------------~~Lt~~~~~~~~~ 295 (435)
T PRK05137 279 SGTT---------------------------------------------------------------TRLTDSPAIDTSP 295 (435)
T ss_pred CCce---------------------------------------------------------------EEccCCCCccCce
Confidence 5431 2223344456678
Q ss_pred EeeCCC-EEEEEEC-CC--cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC---CcEEEEecCCCcEEEEe
Q 005646 361 SWSKNN-YLLSASI-DK--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---GKVRIWAVLSCHVVDWV 433 (686)
Q Consensus 361 ~~s~~~-~L~s~s~-Dg--~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D---g~V~iwd~~~~~~~~~~ 433 (686)
.|+|+| .|+..+. ++ .|.+||+..+.......+...+....|+| ++++|+..+.+ ..|.+||+.++....+.
T Consensus 296 ~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 296 SYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDGSGERILT 374 (435)
T ss_pred eEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECC-CCCEEEEEEcCCCceEEEEEECCCCceEecc
Confidence 999999 6666553 33 68888887766554444566677889999 89988877654 35888898665543332
Q ss_pred ccCCcEEEEEEccCCCEEEEEecC------CcEEEEeCCCCee
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMM------GDCRFYNVSDNHL 470 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~d------g~i~iwd~~~~~~ 470 (686)
....+....|+|||+.|+..+.+ ..++++|+.+...
T Consensus 375 -~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 375 -SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred -CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 23356788999999998876543 2578888866543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-09 Score=112.71 Aligned_cols=263 Identities=13% Similarity=0.106 Sum_probs=146.5
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe-CCCcEEEEEeecCeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-DDGVVRLWQVVEDERL 285 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~vWd~~~~~~~ 285 (686)
..+++++.++.+++.|+.|.++|+..... ..+++.. ..-.++++|+||+|++++. .++.+.|+|..+.+.+
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-------v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATGKV-------VATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSSSE-------EEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCcccE-------EEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 35788899999999999999999876542 2233333 3467899999999999876 5799999999999988
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
..+......... ....+..+...+.....+..+........+-+... ..+............+..|.|+
T Consensus 114 ~~I~~~~~~~~~------~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~-----~~~~~~~i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 114 KTIPTGGMPVDG------PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP-----KNLKVTTIKVGRFPHDGGFDPD 182 (369)
T ss_dssp EEEE--EE-TTT------S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS-----SCEEEEEEE--TTEEEEEE-TT
T ss_pred eecccccccccc------cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc-----cccceeeecccccccccccCcc
Confidence 877654322211 11122233333333333333333332222222111 0111122223456678999999
Q ss_pred C-EE-EEEECCCcEEEEECCCCeeeeEee-----CCCCeEEEEEeec---------CCCEEEEEEcCCcEEEEecCCCcE
Q 005646 366 N-YL-LSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPV---------DDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 366 ~-~L-~s~s~Dg~V~iWd~~~~~~~~~~~-----h~~~V~~v~fsp~---------~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
+ ++ ++...+..|-++|..+++.+..+. |...+..+ .+|. .+...++.-....+.+||..+.++
T Consensus 183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv 261 (369)
T PF02239_consen 183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV 261 (369)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE
T ss_pred cceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeE
Confidence 9 54 445667899999999998877653 44444433 2221 222222333334667789999998
Q ss_pred EEEeccCCcEEEEEEccCCCEEEEE----ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 430 VDWVDIRQIVTAVCYRPDGQGGIVG----SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 430 ~~~~~~~~~V~~v~~spdg~~l~~g----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
+..+...+.-..+..+|+++++.+. ...++|.++|..+.+..... ......++..+.|++
T Consensus 262 v~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i-------~~~~~~~~~h~ef~~ 325 (369)
T PF02239_consen 262 VKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTI-------TPGPGKRVVHMEFNP 325 (369)
T ss_dssp EEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-H-------HHHHT--EEEEEE-T
T ss_pred EEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEE-------eccCCCcEeccEECC
Confidence 8777766655888999999999998 44588999999887543211 111223488899999
|
... |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.4e-10 Score=108.14 Aligned_cols=248 Identities=11% Similarity=0.190 Sum_probs=163.8
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEe-ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV-VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
+.+.||...|++...-|-..-+++.+.|.++|||-- +.++....+.... +..| ....+..+...++.
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m-P~~~-----------~~~~y~~e~~~L~v 85 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM-PSPC-----------SAMEYVSESRRLYV 85 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC-CCCc-----------eEeeeeccceEEEE
Confidence 457889999999988887778999999999999953 3444333332211 1111 12222222222222
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~ 401 (686)
.+.........+ .. .|. ....++....|...|..+.|+-.. .+++.+.|+.+.---.+.+..+..+.....-+++.
T Consensus 86 g~~ngtvtefs~-se-dfn-km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~ 162 (404)
T KOG1409|consen 86 GQDNGTVTEFAL-SE-DFN-KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ 162 (404)
T ss_pred EEecceEEEEEh-hh-hhh-hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence 222221111110 00 010 113455667899999999998777 99999999888765566666665555444455555
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCC---CcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLS---CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~---~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
|.- . +...|-..|.|.+-.+.. +.+..+.+|...+++++|.|..+.+.+|..|..+.+||+-.++....
T Consensus 163 ~d~-~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~----- 234 (404)
T KOG1409|consen 163 FDA-L--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAY----- 234 (404)
T ss_pred eee-E--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceee-----
Confidence 543 2 566666667766654432 33446778999999999999999999999999999999976654321
Q ss_pred eccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
...+|...|..++..+ --..+++++.||.|-+|+..
T Consensus 235 --el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 235 --ELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred --eeccchhhhhhhhhhh-hheeeeeccCCCeEEEEecc
Confidence 1345667788888877 67889999999999999864
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-10 Score=126.13 Aligned_cols=189 Identities=22% Similarity=0.349 Sum_probs=147.2
Q ss_pred eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCC----ceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDG----SILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 208 ~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~----~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
.+......++.+..++.+.+|+......-. .++.-.. ...-+-++++.-|+++|+.-+.|.+|+.....
T Consensus 94 ~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~-------~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 94 KLFEENKKIALVTSRNSLLIRDSKNSSVLS-------KIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred chhhhcceEEEEEcCceEEEEecccCceeh-------hcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 444556678889999999999976543211 1111111 12223346667799999999999999986221
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
++. .+.||.+.|..+.|+
T Consensus 167 -------------------------------------------------------------~p~-~l~GHeG~iF~i~~s 184 (967)
T KOG0974|consen 167 -------------------------------------------------------------KPI-RLKGHEGSIFSIVTS 184 (967)
T ss_pred -------------------------------------------------------------Ccc-eecccCCceEEEEEc
Confidence 122 567999999999999
Q ss_pred CCC-EEEEEECCCcEEEEECCCCeeee--EeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc-CCcE
Q 005646 364 KNN-YLLSASIDKTVRLWRVGNDHCLR--VFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-RQIV 439 (686)
Q Consensus 364 ~~~-~L~s~s~Dg~V~iWd~~~~~~~~--~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-~~~V 439 (686)
.+| ++++.|+|.++|+|++++.+... .|.|...|+.+.|.| + .++|++.|.+.++|+....+...+..| ...+
T Consensus 185 ~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~i 261 (967)
T KOG0974|consen 185 LDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGI 261 (967)
T ss_pred cCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceEEEEEecccceehhhhhhhhcce
Confidence 999 99999999999999999988765 567999999999998 4 999999999999997766555444444 3568
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEeCCCC
Q 005646 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 440 ~~v~~spdg~~l~~gs~dg~i~iwd~~~~ 468 (686)
..+++.++...+++++.||.+++||+...
T Consensus 262 w~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 262 WKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999999999999999999999998654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.2e-09 Score=114.35 Aligned_cols=175 Identities=17% Similarity=0.167 Sum_probs=113.7
Q ss_pred eEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC-C--cEEEEEeecCeeeeeeccCCCCCcceEE
Q 005646 224 RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD-G--VVRLWQVVEDERLTEVDIPEIDPSCIYF 300 (686)
Q Consensus 224 ~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-g--~I~vWd~~~~~~~~~~~~~~~~~~~~~~ 300 (686)
.+.++|.+.... +.+..+...+.+..|+|||++|+..+.+ + .|.+||+.+++...
T Consensus 199 ~l~i~d~dG~~~--------~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-------------- 256 (448)
T PRK04792 199 QLMIADYDGYNE--------QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-------------- 256 (448)
T ss_pred EEEEEeCCCCCc--------eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------
Confidence 566666544322 2344567789999999999998876543 3 57777876654211
Q ss_pred eecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE-EEECCCc--
Q 005646 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDKT-- 376 (686)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~-s~s~Dg~-- 376 (686)
+..+. +.....+|+|+| .|+ +.+.++.
T Consensus 257 ----------------------------------------------lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~ 287 (448)
T PRK04792 257 ----------------------------------------------VTSFP---GINGAPRFSPDGKKLALVLSKDGQPE 287 (448)
T ss_pred ----------------------------------------------ecCCC---CCcCCeeECCCCCEEEEEEeCCCCeE
Confidence 11111 223467999999 554 5566675
Q ss_pred EEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-CC--cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEE
Q 005646 377 VRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DG--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV 453 (686)
Q Consensus 377 V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~ 453 (686)
|.+||+.+++......+.......+|+| +++.|+..+. ++ .|.++|+.+++..............+|+|||++++.
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~ 366 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIM 366 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEE
Confidence 7777888877655444666678899999 8887766553 34 466678877776544323333445789999999888
Q ss_pred EecC-C--cEEEEeCCCCee
Q 005646 454 GSMM-G--DCRFYNVSDNHL 470 (686)
Q Consensus 454 gs~d-g--~i~iwd~~~~~~ 470 (686)
.+.+ + .|.++|+.++..
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred EEecCCceEEEEEECCCCCe
Confidence 6553 3 355667766653
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-08 Score=103.41 Aligned_cols=298 Identities=14% Similarity=0.190 Sum_probs=189.9
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCC--------------
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG-------------- 272 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg-------------- 272 (686)
.++++.|.+++.... ..|.+|......+ +. .+ -...|..+.|+|.++||.|-+...
T Consensus 38 ~~~SP~G~~l~~~~~-~~V~~~~g~~~~~-l~------~~--~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 38 VSESPLGTYLFSEHA-AGVECWGGPSKAK-LV------RF--RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred eeecCcchheehhhc-cceEEccccchhh-ee------ee--ecCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 467778887776554 4588896543321 11 11 224699999999999999976543
Q ss_pred -cEEEEEeecCeeeeeeccCCCC--Cc-ceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeE
Q 005646 273 -VVRLWQVVEDERLTEVDIPEID--PS-CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLH 348 (686)
Q Consensus 273 -~I~vWd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (686)
.+.+||+.++..+..+...... .. .+.|+.++.-... . ....+.++.. .-.+...+.+
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~AR-------------v----v~~sl~i~e~-t~n~~~~p~~ 169 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVAR-------------V----VGSSLYIHEI-TDNIEEHPFK 169 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhh-------------h----ccCeEEEEec-CCccccCchh
Confidence 4999999999988887766554 22 2222222211000 0 0011111111 1111122333
Q ss_pred EeccCCCCeeEEEeeCCC---EEEE-----EECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEE-----
Q 005646 349 EFHGHSGEILDLSWSKNN---YLLS-----ASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS----- 414 (686)
Q Consensus 349 ~l~~h~~~V~~l~~s~~~---~L~s-----~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs----- 414 (686)
.++ ...|.+.+|+|.+ .|+. ...++++++|.+..+..+.+-. ....=..+.|++ .+++|+.--
T Consensus 170 ~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~k 246 (561)
T COG5354 170 NLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTK 246 (561)
T ss_pred hcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeee
Confidence 333 3568888999974 4442 4678899999999777665544 222223567777 666654321
Q ss_pred ------cCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEE--EecCCcEEEEeCCCCeeeeeeeEEeeccccCCC
Q 005646 415 ------IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV--GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC 486 (686)
Q Consensus 415 ------~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~--gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 486 (686)
....++|++++...+....+..++|...+|.|.++.+++ |.+.-.+.++|++.+ +... .+.
T Consensus 247 snKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~----------~Pe 315 (561)
T COG5354 247 SNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY----------FPE 315 (561)
T ss_pred cccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEe----------cCC
Confidence 135688999986665544477899999999998887766 457888999999876 3321 122
Q ss_pred CCeEEEEEeCCCCCeEEEEeCC---CcEEEEeCCc--------------ceeEcCCCCEEEEEe------CCCcEEEEeC
Q 005646 487 KRITGFQFLPQDSSKVMVSCAD---SQVRILQGPN--------------VIGKYKDGKHIVSAG------EDSNVYMWNC 543 (686)
Q Consensus 487 ~~I~~l~fsp~~~~~l~~~s~D---~~I~iwd~~~--------------~~~~~~dg~~l~sgs------~Dg~V~iWd~ 543 (686)
.+=+.+.|+| ...++++++-| |.|-+||... ...|+||++++.+.. .|..|.||++
T Consensus 316 ~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 316 QKRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred cccccccccC-cccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 3345678999 67777776655 6788998542 245889999998874 4889999999
Q ss_pred CCCC
Q 005646 544 IGHE 547 (686)
Q Consensus 544 ~~~~ 547 (686)
....
T Consensus 395 ~g~~ 398 (561)
T COG5354 395 YGAK 398 (561)
T ss_pred cCch
Confidence 8754
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-09 Score=111.24 Aligned_cols=201 Identities=16% Similarity=0.243 Sum_probs=145.7
Q ss_pred eCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCC-CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCc
Q 005646 260 PDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI-DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPK 338 (686)
Q Consensus 260 pdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (686)
|.+.|+|....||.+|||+...++...++..... ...|++. .|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~---------------------------------~w~-- 47 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYT---------------------------------KWG-- 47 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeE---------------------------------EEE--
Confidence 4567999999999999999999887666642211 1111111 111
Q ss_pred cccccCCCeEEeccCCCCeeEEEe----eCCC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEE
Q 005646 339 VFRILEKPLHEFHGHSGEILDLSW----SKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYF 410 (686)
Q Consensus 339 ~~~~~~~~~~~l~~h~~~V~~l~~----s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l 410 (686)
... ........++.+ +.+. .|+-|...|.|.+|++..++....+. |.+.|+++.++. +-..|
T Consensus 48 -L~~--------~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ci 117 (541)
T KOG4547|consen 48 -LSA--------DYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCI 117 (541)
T ss_pred -EEe--------ccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCce
Confidence 000 000011122222 2233 78888899999999999999988886 999999999998 88899
Q ss_pred EEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCe
Q 005646 411 ISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (686)
Q Consensus 411 ~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I 489 (686)
.+++.|+.+..|+...++.+ .+...+..+.+++++|||..+++++ +.|++||+++.+... ...+|.++|
T Consensus 118 yS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~--------~ftgh~s~v 187 (541)
T KOG4547|consen 118 YSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVI--------TFTGHGSPV 187 (541)
T ss_pred EecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEE--------EecCCCcce
Confidence 99999999999999999887 4555677799999999999999886 789999999987654 356788999
Q ss_pred EEEEEeCC----CCCeEE-EEeCCCcEEEEe
Q 005646 490 TGFQFLPQ----DSSKVM-VSCADSQVRILQ 515 (686)
Q Consensus 490 ~~l~fsp~----~~~~l~-~~s~D~~I~iwd 515 (686)
.+++|.-. .+.+++ +...+.-|.+|-
T Consensus 188 ~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 188 RTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred EEEEEEEeccccccceeeeccccccceeEEE
Confidence 99999873 133443 344556666774
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=106.48 Aligned_cols=222 Identities=21% Similarity=0.326 Sum_probs=140.1
Q ss_pred CCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCC
Q 005646 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (686)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (686)
..-|.++.|...|.+||||..+|.|.++.-..... .++... .....+..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-~ey~~~-------t~fqshep----------------------- 73 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-GEYNFQ-------TEFQSHEP----------------------- 73 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccc-cceeee-------eeeeccCc-----------------------
Confidence 45689999999999999999999999996443221 011100 00000000
Q ss_pred ceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC---EEEEEECCCcEEEEECCCCe--------------------
Q 005646 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN---YLLSASIDKTVRLWRVGNDH-------------------- 386 (686)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~~~-------------------- 386 (686)
.|+ .+..+ .-...|..+.|.+++ .++..+.|++|++|.+....
T Consensus 74 ---------EFD----YLkSl-eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~l 139 (433)
T KOG1354|consen 74 ---------EFD----YLKSL-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSL 139 (433)
T ss_pred ---------ccc----hhhhh-hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCcccee
Confidence 000 00001 123468889999876 78888899999999885321
Q ss_pred ---------------eeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC----cEEEEec-----cCCcEE
Q 005646 387 ---------------CLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC----HVVDWVD-----IRQIVT 440 (686)
Q Consensus 387 ---------------~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~----~~~~~~~-----~~~~V~ 440 (686)
|.+.+. |.--|++|.++. |...++++. |=.|.+|.+.-. .++.... ...-|+
T Consensus 140 r~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVIT 217 (433)
T KOG1354|consen 140 RLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVIT 217 (433)
T ss_pred eceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHh
Confidence 222223 778899999998 888777754 788999988632 2333333 345699
Q ss_pred EEEEccC-CCEEEEEecCCcEEEEeCCCCeeeee-----eeEE-e--eccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 441 AVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELD-----AEIC-V--HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 441 ~v~~spd-g~~l~~gs~dg~i~iwd~~~~~~~~~-----~~~~-~--~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
+..|+|. .+.++-.+..|+|++-|++...+-.. .+.. . +.....-...|..+.|++
T Consensus 218 saEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~--------------- 282 (433)
T KOG1354|consen 218 SAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH--------------- 282 (433)
T ss_pred hhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc---------------
Confidence 9999994 45777788999999999985433210 0000 0 000011123466677776
Q ss_pred EEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 512 RILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 512 ~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+|+||++-.. -+|+|||++-..
T Consensus 283 -------------sGryilsRDy-ltvk~wD~nme~ 304 (433)
T KOG1354|consen 283 -------------SGRYILSRDY-LTVKLWDLNMEA 304 (433)
T ss_pred -------------CCcEEEEecc-ceeEEEeccccC
Confidence 8999997543 589999996544
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.1e-10 Score=115.26 Aligned_cols=232 Identities=18% Similarity=0.256 Sum_probs=160.0
Q ss_pred CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccC
Q 005646 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 212 ~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
+.+.+++++.|.+|++|.++....+..+....-++++|+.+|.++.|-.+-++++++ ||-|++||.--+..+..+.-.
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~da 823 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDA 823 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcC
Confidence 456789999999999999988776666666666889999999999999999998875 789999998666543322100
Q ss_pred CCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEE
Q 005646 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLS 370 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s 370 (686)
+ -.+..+.|.++.--... .++.
T Consensus 824 ------------------------------------------------------p---k~~a~~~ikcl~nv~~~iliAg 846 (1034)
T KOG4190|consen 824 ------------------------------------------------------P---KEGAGGNIKCLENVDRHILIAG 846 (1034)
T ss_pred ------------------------------------------------------c---ccCCCceeEecccCcchheeee
Confidence 0 01223344444321122 4445
Q ss_pred EECCCcEEEEECCCCeeeeEee------CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEE
Q 005646 371 ASIDKTVRLWRVGNDHCLRVFP------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVC 443 (686)
Q Consensus 371 ~s~Dg~V~iWd~~~~~~~~~~~------h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~ 443 (686)
++...+|+++|.+.......+. .+..+.|++..| .++.++.+-.+|+|.+.|.++++++ .|.........++
T Consensus 847 csaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla 925 (1034)
T KOG4190|consen 847 CSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA 925 (1034)
T ss_pred ccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc
Confidence 5789999999999887665554 346789999999 9999999999999999999999977 5665555554444
Q ss_pred EccCCCEEEEEecCCcEEE-EeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 444 YRPDGQGGIVGSMMGDCRF-YNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 444 ~spdg~~l~~gs~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
.|..+.++....|.++.+ |...++...+... .+ ..-..|...-+.-+++....+.+.+|-
T Consensus 926 -apsdq~L~~saldHslaVnWhaldgimh~q~k--------pp---pepahflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 926 -APSDQALAQSALDHSLAVNWHALDGIMHLQDK--------PP---PEPAHFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred -CchhHHHHhhcccceeEeeehhcCCeeeeccC--------CC---CcchhhhhccCceeEEeccCcEEEEEe
Confidence 356667777778888888 8766554322111 00 011122222344566666666777774
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-09 Score=104.16 Aligned_cols=194 Identities=17% Similarity=0.285 Sum_probs=134.3
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.+..+......|+.|-..|.+.-+.+.. ++.++...+.+..|...|..+-|+....++++.+.|..+.---.+.+..
T Consensus 72 ~~~~y~~e~~~L~vg~~ngtvtefs~se---dfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~ 148 (404)
T KOG1409|consen 72 SAMEYVSESRRLYVGQDNGTVTEFALSE---DFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR 148 (404)
T ss_pred eEeeeeccceEEEEEEecceEEEEEhhh---hhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc
Confidence 3444455556788898999998887643 3444445566778999999999999999999999998876544555554
Q ss_pred eeeeccCCC--CCcc---eEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 285 LTEVDIPEI--DPSC---IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 285 ~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
+..+..... +..+ ..|...+.+.+..+. ++...-.++..+.+|.+.+.+
T Consensus 149 lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr--------------------------~~~~~~~~i~~~~~h~~~~~~ 202 (404)
T KOG1409|consen 149 LGGYNFETPASALQFDALYAFVGDHSGQITMLK--------------------------LEQNGCQLITTFNGHTGEVTC 202 (404)
T ss_pred ccceEeeccCCCCceeeEEEEecccccceEEEE--------------------------EeecCCceEEEEcCcccceEE
Confidence 333221111 0000 011111111111111 111112567889999999999
Q ss_pred EEeeCCC-EEEEEECCCcEEEEECCCCe--eeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 360 LSWSKNN-YLLSASIDKTVRLWRVGNDH--CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~V~iWd~~~~~--~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
++|.+.. .|++|..|..|.+||+.-.+ ....+.|.+.|..++..+ .-..+++++.||.|-+|++...+
T Consensus 203 l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 203 LKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred EEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hheeeeeccCCCeEEEEecccee
Confidence 9999987 99999999999999997554 344455999999999888 78899999999999999997643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-09 Score=113.03 Aligned_cols=240 Identities=17% Similarity=0.254 Sum_probs=170.6
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
......|+.|+....|||.||.||.++|-.+.+...-........ ...
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa--------------~sn------------------ 60 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAA--------------ASN------------------ 60 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccccc--------------ccc------------------
Confidence 345688999999999999999999999998876541111100000 000
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEee
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNP 404 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp 404 (686)
-..-+++.||.+.|.-+.|+.+. .|-|+..+|.|.+|-+-.+....... ..+.|.+++|+.
T Consensus 61 ---------------LsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~ 125 (1189)
T KOG2041|consen 61 ---------------LSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL 125 (1189)
T ss_pred ---------------cchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC
Confidence 01346789999999999999888 88899999999999998887654433 567899999998
Q ss_pred cCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe---eeeeeeEEeecc
Q 005646 405 VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH---LELDAEICVHSK 481 (686)
Q Consensus 405 ~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~---~~~~~~~~~~~~ 481 (686)
+|..+.....||.|.+=.+...++....-.......+.|++|.+.++.+-.+|.+++||...+- +.....+...+.
T Consensus 126 -dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~ 204 (1189)
T KOG2041|consen 126 -DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGI 204 (1189)
T ss_pred -CCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeee
Confidence 9999999999998887777665543211122334578999999999999999999999987542 222222222222
Q ss_pred ccCCCCCeEEEEEe-------CCCCCeEEEEeCCCcEEEEeCC--------------cceeEcCCCCEEEEEeCCC
Q 005646 482 KKAPCKRITGFQFL-------PQDSSKVMVSCADSQVRILQGP--------------NVIGKYKDGKHIVSAGEDS 536 (686)
Q Consensus 482 ~~~~~~~I~~l~fs-------p~~~~~l~~~s~D~~I~iwd~~--------------~~~~~~~dg~~l~sgs~Dg 536 (686)
......+|..+.|. |.+...++++..+|.++|.... ....|.++|..|+.++.|.
T Consensus 205 ~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 205 FSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred ecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcc
Confidence 22233346666654 3367789999999998887422 2357889999999998753
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-08 Score=108.03 Aligned_cols=160 Identities=17% Similarity=0.202 Sum_probs=111.4
Q ss_pred eccCCCCeeEEEeeCCC-EEEEEECC---CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEE-EEEcCC--cEEEE
Q 005646 350 FHGHSGEILDLSWSKNN-YLLSASID---KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDG--KVRIW 422 (686)
Q Consensus 350 l~~h~~~V~~l~~s~~~-~L~s~s~D---g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~-sgs~Dg--~V~iw 422 (686)
+..+...+...+|+|+| +|+.++.+ ..|++||+.+++......+...+.+++|+| +++.|+ +.+.++ .|++|
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECCCCCccEEEE
Confidence 33456678889999999 77766543 479999999887655555667778899999 887665 444444 58999
Q ss_pred ecCCCcEEEEeccCCcEEEEEEccCCCEEEEEec-CC--cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 423 AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 423 d~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
|+.++....+..+........|+|||+.|+..+. .+ .|+++|+.+++... +. .+...+....|+|
T Consensus 264 d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~---l~------~~~~~~~~~~~sp--- 331 (417)
T TIGR02800 264 DLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR---LT------FRGGYNASPSWSP--- 331 (417)
T ss_pred ECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE---ee------cCCCCccCeEECC---
Confidence 9998877666665555667899999998877654 33 57777876654321 11 1123345566777
Q ss_pred CeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCC---cEEEEeCCCCC
Q 005646 500 SKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDS---NVYMWNCIGHE 547 (686)
Q Consensus 500 ~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg---~V~iWd~~~~~ 547 (686)
+|++|+.++.++ .|++||+.++.
T Consensus 332 -------------------------dg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 332 -------------------------DGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred -------------------------CCCEEEEEEccCCceEEEEEeCCCCC
Confidence 777777777665 78888887643
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=9e-08 Score=103.87 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=94.6
Q ss_pred CeeEEEeeCCC-EEEEEEC-----CCcEEEEECCCC---eeeeEeeC-CCCeEEEEEeecCCCEEEEEE-cCCcEEEE--
Q 005646 356 EILDLSWSKNN-YLLSASI-----DKTVRLWRVGND---HCLRVFPH-SNYVTCVHFNPVDDNYFISGS-IDGKVRIW-- 422 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~-----Dg~V~iWd~~~~---~~~~~~~h-~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iw-- 422 (686)
.....+|+||| .|+..+. +-.+.+|++..+ ........ .......+|+| |++.|+..+ .+|...||
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEE
Confidence 34567999999 6665442 334555777653 33333332 23456789999 888777665 46755555
Q ss_pred ecCC--CcEEEEeccCCcEEEEEEccCCCEEEEEecC---CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC
Q 005646 423 AVLS--CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM---GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (686)
Q Consensus 423 d~~~--~~~~~~~~~~~~V~~v~~spdg~~l~~gs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~ 497 (686)
++.. +....+......+....|+|||+.|+..+.+ ..|++||+.+++..... .....+....|+|
T Consensus 311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt---------~~~~~~~~p~wSp- 380 (428)
T PRK01029 311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT---------TSPENKESPSWAI- 380 (428)
T ss_pred ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc---------CCCCCccceEECC-
Confidence 4432 3333344444567789999999998876553 36999999887653211 0112355677777
Q ss_pred CCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeC---CCcEEEEeCCCCC
Q 005646 498 DSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGE---DSNVYMWNCIGHE 547 (686)
Q Consensus 498 ~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~---Dg~V~iWd~~~~~ 547 (686)
||++|+..+. ...|++|++.+++
T Consensus 381 ---------------------------DG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 381 ---------------------------DSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred ---------------------------CCCEEEEEECCCCCceEEEEECCCCC
Confidence 6665553322 3568888887754
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.7e-07 Score=88.84 Aligned_cols=260 Identities=14% Similarity=0.231 Sum_probs=172.6
Q ss_pred cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC---CcEEEEEeec--CeeeeeeccCCCCCc
Q 005646 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVE--DERLTEVDIPEIDPS 296 (686)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~vWd~~~--~~~~~~~~~~~~~~~ 296 (686)
++-|.+|++.+...++... .+-.+.+.++-|+|+|++++|.++..+ |.|..|.+.. |+. ..+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~----~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-t~ln------- 82 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL----QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-TFLN------- 82 (346)
T ss_pred CCceEEEEEeCcccccchh----hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-EEee-------
Confidence 5679999998665554432 344678899999999999999998665 6666666654 221 0000
Q ss_pred ceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC-C
Q 005646 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-D 374 (686)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~-D 374 (686)
...+.++ +-..+++++++ +|+++.. -
T Consensus 83 --------------------------------------------------~~~~~g~--~p~yvsvd~~g~~vf~AnY~~ 110 (346)
T COG2706 83 --------------------------------------------------RQTLPGS--PPCYVSVDEDGRFVFVANYHS 110 (346)
T ss_pred --------------------------------------------------ccccCCC--CCeEEEECCCCCEEEEEEccC
Confidence 0111122 22778899999 7777764 5
Q ss_pred CcEEEEECCC-Cee---eeEeeCCCC----------eEEEEEeecCCCEEEEEEcC-CcEEEEecCCCcEEE----Eecc
Q 005646 375 KTVRLWRVGN-DHC---LRVFPHSNY----------VTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHVVD----WVDI 435 (686)
Q Consensus 375 g~V~iWd~~~-~~~---~~~~~h~~~----------V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~~~~----~~~~ 435 (686)
|.|.++-++. |.. +..+.|.+. +.+..|.| ++++|++.... -+|.+|++..+.+.. ....
T Consensus 111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~ 189 (346)
T COG2706 111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP 189 (346)
T ss_pred ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence 8999999976 332 344447666 89999999 99999887642 469999999876542 2244
Q ss_pred CCcEEEEEEccCCCEEEEEec-CCcEEEEeCCCC--eeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe-CCCcE
Q 005646 436 RQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDN--HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQV 511 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s-~D~~I 511 (686)
......|.|+|++++..+.+. +++|.+|..... ++.....+......-........+..+| ++++|.+.- ....|
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNRg~dsI 268 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASNRGHDSI 268 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEEecCCCCeE
Confidence 566889999999999877655 899999998874 3221111111111122335567788888 666665543 23455
Q ss_pred EEEeCC-------------------cceeEcCCCCEEEEEeCC-CcEEEEeCCCCC
Q 005646 512 RILQGP-------------------NVIGKYKDGKHIVSAGED-SNVYMWNCIGHE 547 (686)
Q Consensus 512 ~iwd~~-------------------~~~~~~~dg~~l~sgs~D-g~V~iWd~~~~~ 547 (686)
-++.+. ....+.+.|++|+++.+| .+|.+|.++...
T Consensus 269 ~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 269 AVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 555422 124566799999999866 469999887644
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-06 Score=90.48 Aligned_cols=256 Identities=11% Similarity=0.082 Sum_probs=156.7
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC----------CCcEEEEEeecCeeeeeeccCC
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD----------DGVVRLWQVVEDERLTEVDIPE 292 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~----------Dg~I~vWd~~~~~~~~~~~~~~ 292 (686)
++|.|.|..+... . ..+..-..+- .+ ++|||+.|+.+.. +..|.+||+.+.+.+.++..+.
T Consensus 27 ~~v~ViD~~~~~v--~-----g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRV--L-----GMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEE--E-----EEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 7899998765321 1 1122222222 24 9999998887765 7899999999999888777543
Q ss_pred CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEE
Q 005646 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA 371 (686)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~ 371 (686)
.+. . . ....-..++++|+| +|+..
T Consensus 98 ~p~----------------------------------------------------~--~-~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 98 GPR----------------------------------------------------F--L-VGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred Cch----------------------------------------------------h--h-ccCccceEEECCCCCEEEEe
Confidence 210 0 0 11233467889999 66655
Q ss_pred E-C-CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC-CcEE----EEecc-CCcE-EEE
Q 005646 372 S-I-DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHVV----DWVDI-RQIV-TAV 442 (686)
Q Consensus 372 s-~-Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-~~~~----~~~~~-~~~V-~~v 442 (686)
. . +..|-+.|+.+++.+..+.-.+...-...++ .-+..-+.||......+.+ ++.. ..+.. ..++ ..-
T Consensus 123 n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e---~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP 199 (352)
T TIGR02658 123 QFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN---DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP 199 (352)
T ss_pred cCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC---CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC
Confidence 5 3 7899999999999999887544333333322 2222334566655544432 1111 11111 0000 000
Q ss_pred EEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc----cCCCCCeEEEEEeCCCCCeEEEEe----------C
Q 005646 443 CYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK----KAPCKRITGFQFLPQDSSKVMVSC----------A 507 (686)
Q Consensus 443 ~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~I~~l~fsp~~~~~l~~~s----------~ 507 (686)
.|.+ +|+++.+... |+|.+.|+..........+...... .-....+..++++| +++.+++.. .
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCC
Confidence 4456 8888888766 9999999876554433333222111 11233455599999 566665532 2
Q ss_pred CCcEEEEeCCc--------------ceeEcCCCC-EEEEEe-CCCcEEEEeCCCCC
Q 005646 508 DSQVRILQGPN--------------VIGKYKDGK-HIVSAG-EDSNVYMWNCIGHE 547 (686)
Q Consensus 508 D~~I~iwd~~~--------------~~~~~~dg~-~l~sgs-~Dg~V~iWd~~~~~ 547 (686)
.+.|.++|..+ .+++++|++ +|++.. .++.|.|.|..+++
T Consensus 278 ~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 25799999654 378999999 888776 57889999998876
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.3e-08 Score=102.18 Aligned_cols=313 Identities=15% Similarity=0.160 Sum_probs=197.4
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCcccc--------ccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKE--------LSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~--------~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~v 276 (686)
.+..+.....++++|+.||.++|-.+.....+ .+.+.+.|++.||++.|.-+.|+.+.+.|-|...+|.|.|
T Consensus 18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV 97 (1189)
T KOG2041|consen 18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV 97 (1189)
T ss_pred EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE
Confidence 34556677789999999999999998765432 2345677899999999999999999999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
|-+-.+.-..++-..... ..+.+..|+.++..+..... ++.+++-...-.++.++.+. +. .
T Consensus 98 WmlykgsW~EEMiNnRnK-----------SvV~SmsWn~dG~kIcIvYe---DGavIVGsvdGNRIwgKeLk---g~--~ 158 (1189)
T KOG2041|consen 98 WMLYKGSWCEEMINNRNK-----------SVVVSMSWNLDGTKICIVYE---DGAVIVGSVDGNRIWGKELK---GQ--L 158 (1189)
T ss_pred EeeecccHHHHHhhCcCc-----------cEEEEEEEcCCCcEEEEEEc---cCCEEEEeeccceecchhcc---hh--e
Confidence 998877644333221111 12233444444433333222 22333333333333333322 21 2
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCCC-------eeeeEe----e-CCCCeEEEEEee-------cCCCEEEEEEcC
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGND-------HCLRVF----P-HSNYVTCVHFNP-------VDDNYFISGSID 416 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~-------~~~~~~----~-h~~~V~~v~fsp-------~~~~~l~sgs~D 416 (686)
...+.|++|. .++.+-..|.+.++|.... .|.... . ....|..+.|.. .+...|+.+-.+
T Consensus 159 l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 159 LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence 3478899998 7777777899999997643 221111 1 233466666642 267789999999
Q ss_pred CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCC---------cEEEEeCCCCeeeeeeeEEeeccccCCCC
Q 005646 417 GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG---------DCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (686)
Q Consensus 417 g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 487 (686)
|.+.|..-.+......++..-.+..+.|+++|..|++++.+. .|.+|..-... .+..+.+..
T Consensus 239 Gr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i---------~gtlkvpg~ 309 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHI---------VGTLKVPGS 309 (1189)
T ss_pred ceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhh---------eEEEecCCc
Confidence 999987665554444445556788999999999999987643 35555433221 122344567
Q ss_pred CeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEE--eC---CCcEEEEeCCCCC
Q 005646 488 RITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSA--GE---DSNVYMWNCIGHE 547 (686)
Q Consensus 488 ~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sg--s~---Dg~V~iWd~~~~~ 547 (686)
.|+++.|-. . .+-+.-..|+.|.+-+..-...|---.+.++-. .. .-.|.+||..+.+
T Consensus 310 ~It~lsWEg-~-gLriA~AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~ne 372 (1189)
T KOG2041|consen 310 CITGLSWEG-T-GLRIAIAVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNE 372 (1189)
T ss_pred eeeeeEEcC-C-ceEEEEEecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccCh
Confidence 899999976 3 344445568888887765433322222222211 12 2358899998876
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.4e-08 Score=107.17 Aligned_cols=188 Identities=18% Similarity=0.192 Sum_probs=118.6
Q ss_pred eeecCCCccceeecc---ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEE-EEeCCC--cEEEEEeec
Q 005646 208 RVRLNEEDAMFCSKV---QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLA-SAGDDG--VVRLWQVVE 281 (686)
Q Consensus 208 ~~s~~~~~l~~g~~d---~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg--~I~vWd~~~ 281 (686)
.++++++.++..+.. ..|.+|++...... .+....+.+....|+|||++|+ +...++ .|.+||+.+
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~--------~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~ 276 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE--------QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS 276 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEE--------EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 567888888776543 36788887654321 1222334455789999999887 444555 466777766
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
++. ..+..+........
T Consensus 277 ~~~---------------------------------------------------------------~~lt~~~~~~~~~~ 293 (430)
T PRK00178 277 RQL---------------------------------------------------------------SRVTNHPAIDTEPF 293 (430)
T ss_pred CCe---------------------------------------------------------------EEcccCCCCcCCeE
Confidence 541 11222334455678
Q ss_pred eeCCC-EEEEEE-CCC--cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC-C--cEEEEecCCCcEEEEec
Q 005646 362 WSKNN-YLLSAS-IDK--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID-G--KVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 362 ~s~~~-~L~s~s-~Dg--~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D-g--~V~iwd~~~~~~~~~~~ 434 (686)
|+|++ .|+..+ .++ .|.++++.+++...............|+| ++++|+..+.+ + .|.+||+.+++...+..
T Consensus 294 ~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 294 WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCceEEEEEECCCCCEEEccC
Confidence 99998 555544 333 57777887776544332333445678999 88888777653 3 58889999887654433
Q ss_pred cCCcEEEEEEccCCCEEEEEecC---CcEEEEeCCCC
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMM---GDCRFYNVSDN 468 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~d---g~i~iwd~~~~ 468 (686)
. .......|+|||+.++..+.+ ..+.++++...
T Consensus 373 ~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 373 T-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred C-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 2 223356899999999887654 24667777543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.7e-07 Score=106.22 Aligned_cols=313 Identities=14% Similarity=0.160 Sum_probs=192.5
Q ss_pred Ccceeeec--CCCccceeeccceEEEEEc----CCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 005646 204 GEGERVRL--NEEDAMFCSKVQRVKVYHC----KKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (686)
Q Consensus 204 ~~~~~~s~--~~~~l~~g~~d~~v~vw~~----~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW 277 (686)
..+.++.+ +.+.++.+..+|.|.+... .....+.. ..=...|.+++||||+..||.+..+++|.+-
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~V--------G~vd~GI~a~~WSPD~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIV--------GSVDSGILAASWSPDEELLALVTGEGNLLLM 147 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEE--------EEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence 45555553 4557888899999999833 32222221 1235689999999999999999989988876
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCe
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 357 (686)
. .+.+.+.+.......... .....+.|++.....-....+.... ..-++.+- ......+. +...-
T Consensus 148 t-~~fd~i~E~~l~~~~~~~--------~~~VsVGWGkKeTQF~Gs~gK~aa~--~~~~p~~~---~~d~~~~s-~dd~~ 212 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDFGE--------SKHVSVGWGKKETQFHGSAGKAAAR--QLRDPTVP---KVDEGKLS-WDDGR 212 (928)
T ss_pred e-ccceEEEEeecCccccCC--------CceeeeccCcccCccCcchhhhhhh--hccCCCCC---ccccCccc-cCCCc
Confidence 4 555656555544322110 1112222222211111000000000 00000000 00011223 45566
Q ss_pred eEEEeeCCC-EEEEEEC---C---CcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEc---CCcEEEEecCC
Q 005646 358 LDLSWSKNN-YLLSASI---D---KTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSI---DGKVRIWAVLS 426 (686)
Q Consensus 358 ~~l~~s~~~-~L~s~s~---D---g~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~---Dg~V~iwd~~~ 426 (686)
..++|-.|| ++|..+. . ..+|||+-+ |....+-. -.+--.+++|-| .|++|++... ...|.+|.-+.
T Consensus 213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNG 290 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNG 290 (928)
T ss_pred eEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCC
Confidence 789999999 8777664 2 579999865 55443333 334446789999 9999998775 34566666433
Q ss_pred CcEEE----EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE
Q 005646 427 CHVVD----WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (686)
Q Consensus 427 ~~~~~----~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l 502 (686)
-+--. +......|..+.|++|+..||+-..|. |.+|-..+.+.-++.++..... ..+..+.|+|.++..|
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-----~~~~~~~Wdpe~p~~L 364 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-----ESVNFVKWDPEKPLRL 364 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-----CCCCceEECCCCCCEE
Confidence 22211 112346799999999999999976554 9999999988777666543322 3345599999888888
Q ss_pred EEEeCCCcEEEEeCC--------------------------------------------------cceeEcCCCCEEEEE
Q 005646 503 MVSCADSQVRILQGP--------------------------------------------------NVIGKYKDGKHIVSA 532 (686)
Q Consensus 503 ~~~s~D~~I~iwd~~--------------------------------------------------~~~~~~~dg~~l~sg 532 (686)
.+.+.++.+..++.. +.++|++++..+++-
T Consensus 365 ~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl 444 (928)
T PF04762_consen 365 HVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVL 444 (928)
T ss_pred EEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEE
Confidence 888887777665411 125566688779999
Q ss_pred eCCCcEEEEeCCCCC
Q 005646 533 GEDSNVYMWNCIGHE 547 (686)
Q Consensus 533 s~Dg~V~iWd~~~~~ 547 (686)
..||.|.+|......
T Consensus 445 ~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 445 TSDGSLSIYEWDLKN 459 (928)
T ss_pred ECCCCEEEEEecCCC
Confidence 999999999976543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=126.67 Aligned_cols=181 Identities=18% Similarity=0.289 Sum_probs=138.9
Q ss_pred cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeecc
Q 005646 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 211 ~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
+...+.++|+.||.|++|.+........ .+ .+....|+.+.|+.+|+.+..+..||.+.+|.+..
T Consensus 2218 p~~~~Yltgs~dgsv~~~~w~~~~~v~~----~r--t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--------- 2282 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHGQQVVC----FR--TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--------- 2282 (2439)
T ss_pred CCCceEEecCCCceEEEEeccCCCeEEE----ee--ccCcchhhhhhhcccCCceeeeccCCceeecccCC---------
Confidence 3445779999999999998876443211 11 12338899999999999999999999999998751
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEE
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLS 370 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s 370 (686)
++....+.|.....+..|-. ..+++
T Consensus 2283 ------------------------------------------------------k~~~s~qchnk~~~Df~Fi~-s~~~t 2307 (2439)
T KOG1064|consen 2283 ------------------------------------------------------KPYTSWQCHNKALSDFRFIG-SLLAT 2307 (2439)
T ss_pred ------------------------------------------------------cceeccccCCccccceeeee-hhhhc
Confidence 35566677888888888876 34555
Q ss_pred EE---CCCcEEEEECCCCeeeeE--eeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEc
Q 005646 371 AS---IDKTVRLWRVGNDHCLRV--FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYR 445 (686)
Q Consensus 371 ~s---~Dg~V~iWd~~~~~~~~~--~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~s 445 (686)
++ .++.+.+||.--...... .-|.+.++++++-| ...+|++|+.+|.|++||++..++...+.. +.
T Consensus 2308 ag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~ 2378 (2439)
T KOG1064|consen 2308 AGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD 2378 (2439)
T ss_pred cccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh
Confidence 43 578999999754332222 33999999999999 899999999999999999999887644432 33
Q ss_pred cCCCEEEEEecCCcEEEEeCCCCeee
Q 005646 446 PDGQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 446 pdg~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
...++++|+..|.++||++....+.
T Consensus 2379 -~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2379 -TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred -hhheeeccCcccceEEEEccccchh
Confidence 4568999999999999999876543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-07 Score=97.67 Aligned_cols=306 Identities=15% Similarity=0.193 Sum_probs=185.7
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC-----------CCcE
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-----------DGVV 274 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-----------Dg~I 274 (686)
..++++.|.+|++-...| |.+|--. .+ .+.+.+ .|. .|.-+.|||+.+||+|=+. -..+
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~----~f---~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGE----SF---DRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCc----cH---HHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceE
Confidence 456889999999887766 7788322 11 112222 254 4889999999999999653 2679
Q ss_pred EEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC
Q 005646 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (686)
Q Consensus 275 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 354 (686)
+|||+.+|.....+...........+ .-|+.+........ ...+.++....+.+.++.. -..
T Consensus 285 ~IWDI~tG~lkrsF~~~~~~~~~WP~----------frWS~DdKy~Arm~----~~sisIyEtpsf~lld~Ks----lki 346 (698)
T KOG2314|consen 285 IIWDIATGLLKRSFPVIKSPYLKWPI----------FRWSHDDKYFARMT----GNSISIYETPSFMLLDKKS----LKI 346 (698)
T ss_pred EEEEccccchhcceeccCCCccccce----------EEeccCCceeEEec----cceEEEEecCceeeecccc----cCC
Confidence 99999999988887764332211111 11222211111110 0122222222222222111 123
Q ss_pred CCeeEEEeeCCC-EEEEEEC-----CCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEE----------EcCC
Q 005646 355 GEILDLSWSKNN-YLLSASI-----DKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISG----------SIDG 417 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s~-----Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sg----------s~Dg 417 (686)
..|....|+|.+ .||-=.. -..+.|-.+.+++.+++-. ++-.=-.+.|.. ++.+|+.- +.-.
T Consensus 347 ~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 347 SGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFS 425 (698)
T ss_pred ccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEe
Confidence 568888999988 5553221 2456777777777776655 322222345554 66666542 2223
Q ss_pred cEEEEecCCCcE-EEEeccCCcEEEEEEccCCCEEEEEec---CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 418 KVRIWAVLSCHV-VDWVDIRQIVTAVCYRPDGQGGIVGSM---MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 418 ~V~iwd~~~~~~-~~~~~~~~~V~~v~~spdg~~l~~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
.+-|+.++...+ +.....+..|.+.+|-|.|..+++-+. ..++.+|.+.+....... .+.-.....+.+.
T Consensus 426 n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l------Vk~~dk~~~N~vf 499 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL------VKELDKKFANTVF 499 (698)
T ss_pred eEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh------hhhhcccccceEE
Confidence 466777776553 466778899999999999998776433 467999988742211110 0111224478899
Q ss_pred EeCCCCCeEEEE---eCCCcEEEEeCC---------------cceeEcCCCCEEEEEeC------CCcEEEEeCCCCC
Q 005646 494 FLPQDSSKVMVS---CADSQVRILQGP---------------NVIGKYKDGKHIVSAGE------DSNVYMWNCIGHE 547 (686)
Q Consensus 494 fsp~~~~~l~~~---s~D~~I~iwd~~---------------~~~~~~~dg~~l~sgs~------Dg~V~iWd~~~~~ 547 (686)
|+| .+..++++ +..|.+.++|.. +-+.|.|.|+|++|++. |.--+||++....
T Consensus 500 wsP-kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 500 WSP-KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred EcC-CCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecHH
Confidence 999 66766554 457899999965 33678899999999975 5667888887653
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.6e-08 Score=106.32 Aligned_cols=188 Identities=14% Similarity=0.163 Sum_probs=113.4
Q ss_pred eeeecCCCccceeecc-c--eEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEE-EeCCCc--EEEEEee
Q 005646 207 ERVRLNEEDAMFCSKV-Q--RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLAS-AGDDGV--VRLWQVV 280 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d-~--~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~--I~vWd~~ 280 (686)
..++++++.++..+.. + .|.+|+....... .+....+.....+|+|||+.|+. .+.++. |.+||+.
T Consensus 223 p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--------~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 223 PAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--------KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred ceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--------EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 3678888888876543 2 5777776543221 11111223446899999998765 566665 5555665
Q ss_pred cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
+++. ..+..+.......
T Consensus 295 tg~~---------------------------------------------------------------~~lt~~~~~~~~p 311 (448)
T PRK04792 295 TKAL---------------------------------------------------------------TRITRHRAIDTEP 311 (448)
T ss_pred CCCe---------------------------------------------------------------EECccCCCCccce
Confidence 5431 1222234455678
Q ss_pred EeeCCC-EEEEEE-CCC--cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-CC--cEEEEecCCCcEEEEe
Q 005646 361 SWSKNN-YLLSAS-IDK--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DG--KVRIWAVLSCHVVDWV 433 (686)
Q Consensus 361 ~~s~~~-~L~s~s-~Dg--~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~ 433 (686)
+|+|++ .|+..+ .++ .|.++|+.+++......+.......+|+| ++++|+..+. ++ .|.++|+.+++...+.
T Consensus 312 ~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 312 SWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLETGAMQVLT 390 (448)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECC-CCCEEEEEEecCCceEEEEEECCCCCeEEcc
Confidence 999999 555444 344 46666777776544322333445678999 8888877655 34 4566788887755433
Q ss_pred ccCCcEEEEEEccCCCEEEEEecC-Cc--EEEEeCCC
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMM-GD--CRFYNVSD 467 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~d-g~--i~iwd~~~ 467 (686)
.. .......|+|||+.|+..+.+ |. +++++...
T Consensus 391 ~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 391 ST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred CC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 22 122345899999988876654 33 66777643
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.4e-08 Score=103.74 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=80.1
Q ss_pred CeeEEEeeCCC-EEEEEE-CCCcEEEEEC--CC-CeeeeEee-CCCCeEEEEEeecCCCEEEEEEcC---CcEEEEecCC
Q 005646 356 EILDLSWSKNN-YLLSAS-IDKTVRLWRV--GN-DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSID---GKVRIWAVLS 426 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s-~Dg~V~iWd~--~~-~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~D---g~V~iwd~~~ 426 (686)
.....+|+||| .|+..+ .++...||.+ .. +.....+. +...+....|+| +++.|+..+.+ ..|.+||+.+
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCC
Confidence 44567999999 666554 5676666644 32 22333343 456778899999 89988876543 3699999999
Q ss_pred CcEEEEeccCCcEEEEEEccCCCEEEEEec---CCcEEEEeCCCCee
Q 005646 427 CHVVDWVDIRQIVTAVCYRPDGQGGIVGSM---MGDCRFYNVSDNHL 470 (686)
Q Consensus 427 ~~~~~~~~~~~~V~~v~~spdg~~l~~gs~---dg~i~iwd~~~~~~ 470 (686)
++...+......+....|+|||+.|+.... ...|+++|+.+++.
T Consensus 361 g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 361 GRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 987766554456778999999998876443 34688889877654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.3e-07 Score=107.73 Aligned_cols=164 Identities=13% Similarity=0.110 Sum_probs=104.1
Q ss_pred eEEEeeC-CC-EEEEEECCCcEEEEECCCCeeeeEee---------------CCCCeEEEEEeecCCC-EEEEEEcCCcE
Q 005646 358 LDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP---------------HSNYVTCVHFNPVDDN-YFISGSIDGKV 419 (686)
Q Consensus 358 ~~l~~s~-~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---------------h~~~V~~v~fsp~~~~-~l~sgs~Dg~V 419 (686)
.+++++| ++ ++++.+.++.|++||..++....... .-...+.|+++| +++ ++++-+.+++|
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~I 764 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSI 764 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeE
Confidence 4789999 45 66677788999999998775532111 112456799999 776 56666778999
Q ss_pred EEEecCCCcEEEEec--------------c--------CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE
Q 005646 420 RIWAVLSCHVVDWVD--------------I--------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (686)
Q Consensus 420 ~iwd~~~~~~~~~~~--------------~--------~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~ 477 (686)
++||+.++....... . -.....++++++|+.+++-+.+++|++||..++.......
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-- 842 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-- 842 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec--
Confidence 999998765322110 0 1124689999999988888899999999998765432110
Q ss_pred eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCc--EEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ--VRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 478 ~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~--I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.+.. +..||. --.++.+..+++.++|+.+++-+.++.|++||+.+++
T Consensus 843 -~G~~----------------------G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 843 -TGKA----------------------GFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred -cCCc----------------------CCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 0000 000000 0001223344444477777777777888888887754
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-06 Score=90.33 Aligned_cols=243 Identities=8% Similarity=0.011 Sum_probs=144.4
Q ss_pred eecCCCccceee----------ccceEEEEEcCCccccccccccCc--eecccCCceEEEEEeeCCCEEEEEeC--CCcE
Q 005646 209 VRLNEEDAMFCS----------KVQRVKVYHCKKRSKELSALYKGQ--EIQAHDGSILTMKFSPDGQYLASAGD--DGVV 274 (686)
Q Consensus 209 ~s~~~~~l~~g~----------~d~~v~vw~~~~~~~~~~~~~~~~--~l~~H~~~I~~l~fspdg~~Lasgs~--Dg~I 274 (686)
++++++.+..+. .+..|.|||.......- .+.... +++ ....-..++++|||++|+.... +..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~-~i~~p~~p~~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA-DIELPEGPRFL-VGTYPWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe-EEccCCCchhh-ccCccceEEECCCCCEEEEecCCCCCEE
Confidence 777777665554 47899999987654321 111000 000 1223447899999999998763 6899
Q ss_pred EEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC
Q 005646 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (686)
Q Consensus 275 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 354 (686)
-|.|+.+++.+.++..+. |....+........... ++......+..... ...-+..+|+....++. .
T Consensus 131 ~VvD~~~~kvv~ei~vp~----~~~vy~t~e~~~~~~~~--Dg~~~~v~~d~~g~--~~~~~~~vf~~~~~~v~-----~ 197 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDVPD----CYHIFPTANDTFFMHCR--DGSLAKVGYGTKGN--PKIKPTEVFHPEDEYLI-----N 197 (352)
T ss_pred EEEECCCCcEEEEEeCCC----CcEEEEecCCccEEEee--cCceEEEEecCCCc--eEEeeeeeecCCccccc-----c
Confidence 999999999999888743 22222211111111111 11111111111111 11111111110000100 1
Q ss_pred CCeeEEEeeC-CC-EEEEEECCCcEEEEECCCC-----eeeeEee--------CCCCeEEEEEeecCCCEEEEEEc----
Q 005646 355 GEILDLSWSK-NN-YLLSASIDKTVRLWRVGND-----HCLRVFP--------HSNYVTCVHFNPVDDNYFISGSI---- 415 (686)
Q Consensus 355 ~~V~~l~~s~-~~-~L~s~s~Dg~V~iWd~~~~-----~~~~~~~--------h~~~V~~v~fsp~~~~~l~sgs~---- 415 (686)
.+ .+.+ +| +++.... |+|.+-|+... +.+..+. ..+.+.-++++| +++.++....
T Consensus 198 rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~ 271 (352)
T TIGR02658 198 HP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAK 271 (352)
T ss_pred CC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCcc
Confidence 11 3455 66 5555444 99999996443 3333322 234455699999 7777777431
Q ss_pred ------CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCC-EEEEEe-cCCcEEEEeCCCCeeee
Q 005646 416 ------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ-GGIVGS-MMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 416 ------Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~-~l~~gs-~dg~i~iwd~~~~~~~~ 472 (686)
.+.|.++|..+++.+..+.....+..++++|||+ .|++.. .++.|.++|+.+++...
T Consensus 272 ~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 272 WTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred ccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 2479999999999999888888999999999999 777766 57889999999887653
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=118.38 Aligned_cols=185 Identities=14% Similarity=0.189 Sum_probs=151.3
Q ss_pred ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC
Q 005646 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (686)
Q Consensus 351 ~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~ 427 (686)
+.|-..|.++.-+|.. +.+||+.||.|++|....++.+..+. -+..|+.+.|+. .|+.+..+..||.+.+|.+...
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCCc
Confidence 3455678888888888 99999999999999999999888887 458899999999 8999999999999999999977
Q ss_pred cEEEEeccCCcEEEEEEccCCCEEEEEe---cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 428 HVVDWVDIRQIVTAVCYRPDGQGGIVGS---MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 428 ~~~~~~~~~~~V~~v~~spdg~~l~~gs---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
....+..|....+.+.|-. ..+++++ .++.+.+||..-..... .+ ...|...++++++.| ..+++++
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s----~v---~~~H~~gaT~l~~~P-~~qllis 2353 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS----LV---HTCHDGGATVLAYAP-KHQLLIS 2353 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc----ee---eeecCCCceEEEEcC-cceEEEe
Confidence 7778888888888888865 4566643 46789999975332211 11 266888999999999 7899999
Q ss_pred EeCCCcEEEEeCCcc------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 505 SCADSQVRILQGPNV------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 505 ~s~D~~I~iwd~~~~------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
|+.+|.|++||.... .++. ...++++|+..|.|+||++....
T Consensus 2354 ggr~G~v~l~D~rqrql~h~~~~~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQALD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred cCCcCcEEEeehHHHHHHHHhhhhh-hhheeeccCcccceEEEEccccc
Confidence 999999999997642 2233 77899999999999999998754
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.3e-09 Score=107.35 Aligned_cols=232 Identities=15% Similarity=0.199 Sum_probs=154.1
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+.+.||+..|..++--.+.+-+++++.|++|++|.+..... +..
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD-------~~~----------------------------- 772 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD-------EIG----------------------------- 772 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC-------ccc-----------------------------
Confidence 46789999999998877888899999999999999864220 000
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTC 399 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~ 399 (686)
...+..+++.|..+|.++-|-.+. +++ +.|+.|.+||.--++.+.... ..+.+..
T Consensus 773 -------------------tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ 831 (1034)
T KOG4190|consen 773 -------------------TSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGN 831 (1034)
T ss_pred -------------------cceeeeEhhhccCcccceeeeeccceee--eccCcceeecccccchhHhhhcCcccCCCce
Confidence 012345677899999999998876 554 458999999998887776443 3334444
Q ss_pred EEEeec-CCCEEEEE-EcCCcEEEEecCCCcEEE-Ee-----ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee
Q 005646 400 VHFNPV-DDNYFISG-SIDGKVRIWAVLSCHVVD-WV-----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 400 v~fsp~-~~~~l~sg-s~Dg~V~iwd~~~~~~~~-~~-----~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
+..-|. +..+++.| +...+|+++|.+.+..+. +. .....+.+++..|.|+.++++-.+|.|.+.|.++++.+
T Consensus 832 ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 832 IKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred eEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence 444442 44555555 788999999999887552 22 22355889999999999999999999999999998854
Q ss_pred eeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE-EeCCcceeEcC-------------CCCEEEEEeCCCc
Q 005646 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI-LQGPNVIGKYK-------------DGKHIVSAGEDSN 537 (686)
Q Consensus 472 ~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i-wd~~~~~~~~~-------------dg~~l~sgs~Dg~ 537 (686)
..... ..... +++.....+.++....|.++.+ |...+.+.... -|..|+++.....
T Consensus 912 Nswrp--------mecdl--lqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~ 981 (1034)
T KOG4190|consen 912 NSWRP--------MECDL--LQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNI 981 (1034)
T ss_pred ccCCc--------ccchh--hhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcE
Confidence 32110 01111 1222112344555555666666 65443332221 3556677666666
Q ss_pred EEEEe
Q 005646 538 VYMWN 542 (686)
Q Consensus 538 V~iWd 542 (686)
+.||.
T Consensus 982 lgVYa 986 (1034)
T KOG4190|consen 982 LGVYA 986 (1034)
T ss_pred EEEEe
Confidence 67765
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-07 Score=98.76 Aligned_cols=114 Identities=13% Similarity=0.225 Sum_probs=96.9
Q ss_pred ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 351 ~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
..|.+.|.++.++.+- .|.|++.|+.+..|+....+.++.+. .+..+.+++.+| |+.++++++ +.|.+||+.+++
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~ke 175 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKE 175 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCce
Confidence 3699999999998776 99999999999999999999999888 778899999999 899999987 689999999999
Q ss_pred EE-EEeccCCcEEEEEEccC-----CCEEEEEe-cCCcEEEEeCCC
Q 005646 429 VV-DWVDIRQIVTAVCYRPD-----GQGGIVGS-MMGDCRFYNVSD 467 (686)
Q Consensus 429 ~~-~~~~~~~~V~~v~~spd-----g~~l~~gs-~dg~i~iwd~~~ 467 (686)
++ .+.+|.++|.++.|.-+ |.+++++. .+..+.+|-+..
T Consensus 176 vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 176 VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 87 66688999999999887 77776643 345577776543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.8e-07 Score=93.06 Aligned_cols=148 Identities=20% Similarity=0.330 Sum_probs=108.9
Q ss_pred CeeEEEeeCCC--EEE--EEECCC---------cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEE--EcCCcEE
Q 005646 356 EILDLSWSKNN--YLL--SASIDK---------TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISG--SIDGKVR 420 (686)
Q Consensus 356 ~V~~l~~s~~~--~L~--s~s~Dg---------~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sg--s~Dg~V~ 420 (686)
.=..+.|++-| +|+ +..-|+ ++++.++....+.-.+...++|.++.|+| ++..|+++ -.=.++.
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~-s~~EF~VvyGfMPAkvt 297 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSP-SGREFAVVYGFMPAKVT 297 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECC-CCCEEEEEEecccceEE
Confidence 33578898877 433 333344 68899988777777788899999999999 77766654 3557899
Q ss_pred EEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEec---CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC
Q 005646 421 IWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM---MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (686)
Q Consensus 421 iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~ 497 (686)
|||++...+..+. .++=+++-|+|.|++++.++. .|.+-|||+.+.+++.... ...-+-+.|+|
T Consensus 298 ifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~----------a~~tt~~eW~P- 364 (566)
T KOG2315|consen 298 IFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK----------AANTTVFEWSP- 364 (566)
T ss_pred EEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc----------cCCceEEEEcC-
Confidence 9999876554443 455678999999999998765 5789999999866543221 13356789999
Q ss_pred CCCeEEEEeC------CCcEEEEeCC
Q 005646 498 DSSKVMVSCA------DSQVRILQGP 517 (686)
Q Consensus 498 ~~~~l~~~s~------D~~I~iwd~~ 517 (686)
++.+++++.. |+.++||+..
T Consensus 365 dGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 365 DGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCcEEEEEeccccEEecCCeEEEEec
Confidence 7777776653 7888888864
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.5e-06 Score=88.27 Aligned_cols=250 Identities=16% Similarity=0.237 Sum_probs=153.2
Q ss_pred eeeecCCCccceeec----cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC-CCcEEEEEeec
Q 005646 207 ERVRLNEEDAMFCSK----VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVE 281 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~----d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~vWd~~~ 281 (686)
..++++++.|.+... .+.|..|.+......+..+ .........-..++++|++++|+++.. +|.|.++++..
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~---~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL---NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE---EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe---eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence 455667777666554 5789999887653222222 222223345567999999999999975 89999999987
Q ss_pred Ceeeeeec-cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 282 DERLTEVD-IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 282 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
...+.... ... .... . ..+ -........++
T Consensus 119 ~g~l~~~~~~~~-------------------------------~~g~--------g-------~~~---~rq~~~h~H~v 149 (345)
T PF10282_consen 119 DGSLGEVVQTVR-------------------------------HEGS--------G-------PNP---DRQEGPHPHQV 149 (345)
T ss_dssp TSEEEEEEEEEE-------------------------------SEEE--------E-------SST---TTTSSTCEEEE
T ss_pred Ccccceeeeecc-------------------------------cCCC--------C-------Ccc---cccccccceeE
Confidence 43222110 000 0000 0 000 00123446789
Q ss_pred EeeCCC-EEEEEE-CCCcEEEEECCCCe--ee--eE--eeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecC--CCcE
Q 005646 361 SWSKNN-YLLSAS-IDKTVRLWRVGNDH--CL--RV--FPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVL--SCHV 429 (686)
Q Consensus 361 ~~s~~~-~L~s~s-~Dg~V~iWd~~~~~--~~--~~--~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~--~~~~ 429 (686)
.++|++ +|++.. ....|.+|++.... .. .. +........++|+| ++++++... .+++|.++++. ++..
T Consensus 150 ~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 150 VFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCce
Confidence 999998 665543 34579999997665 32 22 23667789999999 887776554 57889999998 4433
Q ss_pred E--EEec-----c--CCcEEEEEEccCCCEEEEEec-CCcEEEEeCC--CCeeeeeeeEEeeccccCCCCCeEEEEEeCC
Q 005646 430 V--DWVD-----I--RQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVS--DNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (686)
Q Consensus 430 ~--~~~~-----~--~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~ 497 (686)
. .... . ......|+++|||++|+++.. .+.|.+|++. ++++.....+... ......++++|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~------G~~Pr~~~~s~- 301 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG------GKFPRHFAFSP- 301 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES------SSSEEEEEE-T-
T ss_pred eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC------CCCccEEEEeC-
Confidence 2 1111 1 125788999999999888664 6779999994 3455443333222 24478999999
Q ss_pred CCCeEEEEe-CCCcEEEEeC
Q 005646 498 DSSKVMVSC-ADSQVRILQG 516 (686)
Q Consensus 498 ~~~~l~~~s-~D~~I~iwd~ 516 (686)
++++|+++. .++.|.+|+.
T Consensus 302 ~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 302 DGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEecCCCeEEEEEE
Confidence 677777665 5678888864
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4e-08 Score=95.08 Aligned_cols=214 Identities=22% Similarity=0.420 Sum_probs=138.6
Q ss_pred CCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCC
Q 005646 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (686)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (686)
..-|+++.|...|.||+||...|.|.++.-.... -.+.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-~cey----------------------------------------- 63 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSY-GCEY----------------------------------------- 63 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeeccccc-ccch-----------------------------------------
Confidence 4579999999999999999999999999754322 0000
Q ss_pred ceEEEeCCccccccCCCeEEeccC------------CCCeeEEEeeCCC---EEEEEECCCcEEEEECCCCee-------
Q 005646 330 SACVVFPPKVFRILEKPLHEFHGH------------SGEILDLSWSKNN---YLLSASIDKTVRLWRVGNDHC------- 387 (686)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~h------------~~~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~~~~------- 387 (686)
+.+.+|++| ...|..+.|..++ .++..+.|++|++|.+.....
T Consensus 64 ---------------kf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nn 128 (460)
T COG5170 64 ---------------KFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENN 128 (460)
T ss_pred ---------------hhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccc
Confidence 112222223 2357888887665 788888999999998854310
Q ss_pred -----------------------------------eeEe--eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC---
Q 005646 388 -----------------------------------LRVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC--- 427 (686)
Q Consensus 388 -----------------------------------~~~~--~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~--- 427 (686)
.+.+ .|.--|+++.|+. +...++++ .|=.|.+|++.-.
T Consensus 129 ls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~s 206 (460)
T COG5170 129 LSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSA-DDLRINLWNLEIIDGS 206 (460)
T ss_pred cccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chheeeec-cceeeeeccccccCCc
Confidence 0111 1667788999987 66666664 5788999988632
Q ss_pred -cEEEEecc-----CCcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeee----EEeec----cccCCCCCeEEE
Q 005646 428 -HVVDWVDI-----RQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAE----ICVHS----KKKAPCKRITGF 492 (686)
Q Consensus 428 -~~~~~~~~-----~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~----~~~~~----~~~~~~~~I~~l 492 (686)
.++....+ ...|++..|+|.. ..+.-.+..|.|++-|++...+-.... ....+ ....-...|..+
T Consensus 207 FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~ 286 (460)
T COG5170 207 FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDF 286 (460)
T ss_pred eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcce
Confidence 23444333 3458999999954 455567789999999998543321100 00000 001122446667
Q ss_pred EEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCc
Q 005646 493 QFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAH 551 (686)
Q Consensus 493 ~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~ 551 (686)
.|++ +|+||++-+. -+|+|||++..+.+..
T Consensus 287 kFs~----------------------------ngryIlsRdy-ltvkiwDvnm~k~pik 316 (460)
T COG5170 287 KFSD----------------------------NGRYILSRDY-LTVKIWDVNMAKNPIK 316 (460)
T ss_pred EEcC----------------------------CCcEEEEecc-ceEEEEecccccCCce
Confidence 7776 8999987654 4899999988775433
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.1e-07 Score=85.56 Aligned_cols=222 Identities=16% Similarity=0.116 Sum_probs=143.7
Q ss_pred eeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-----CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCC
Q 005646 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-----DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 219 g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-----dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
.+....+-+|+.....+.....+. .|.|.| ...+||.||.-|...+|...+.+...
T Consensus 48 i~~t~sv~i~~~y~N~~~iv~~y~------------g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~------- 108 (344)
T KOG4532|consen 48 ISKTISVPINSHYSNPKGIVEFYT------------GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHL------- 108 (344)
T ss_pred ccceeeeEeccccCCchhhEEeee------------cccccchHhhccccEEEeccccceeeeecccCcccce-------
Confidence 456677888887766554444443 345544 24489999999999999988765211
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC-C-EEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN-N-YLLSA 371 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~-~-~L~s~ 371 (686)
.....|...|.-+.-.-+ . .+..+
T Consensus 109 ------------------------------------------------------~~cd~snn~v~~~~r~cd~~~~~~i~ 134 (344)
T KOG4532|consen 109 ------------------------------------------------------YQCDVSNNDVTLVKRYCDLKFPLNIA 134 (344)
T ss_pred ------------------------------------------------------eeecccccchhhhhhhcccccceeec
Confidence 111112222221111111 2 67888
Q ss_pred ECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE--EE--EeccCCcEEEEEEcc
Q 005646 372 SIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--VD--WVDIRQIVTAVCYRP 446 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~--~~--~~~~~~~V~~v~~sp 446 (686)
+.|.++++.++.-+....... .+-.+.+++++| ++.++++.+....|-.|.+..... +. .......-.+..|+.
T Consensus 135 sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~ 213 (344)
T KOG4532|consen 135 SNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE 213 (344)
T ss_pred cCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc
Confidence 999999999987654433332 223489999999 999999999999999999875432 22 223344556789999
Q ss_pred CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCC-eEEEEeCCCcEEEEeCC
Q 005646 447 DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS-KVMVSCADSQVRILQGP 517 (686)
Q Consensus 447 dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~-~l~~~s~D~~I~iwd~~ 517 (686)
....+|++++||++.|||++........ ....+..|.+.+..+.|++.+.- +|+..-.-+.+.+.|+.
T Consensus 214 ~~~~FAv~~Qdg~~~I~DVR~~~tpm~~---~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 214 NDLQFAVVFQDGTCAIYDVRNMATPMAE---ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred CcceEEEEecCCcEEEEEecccccchhh---hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 9999999999999999999865533221 12234458899999999984433 23333333455555544
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.6e-08 Score=95.04 Aligned_cols=184 Identities=14% Similarity=0.094 Sum_probs=126.2
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
..++..+..++++-.+|.+.+-+.. ...+...|.+++|.-+++..+|+. +.+++.|||.|+.+..||+...+.
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t-----~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~- 200 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYET-----EMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT- 200 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecc-----eeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-
Confidence 4566667777888888888743321 223445678999999999999986 567999999999999999973220
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
+ ..+..+-|...|.++.-+|.
T Consensus 201 --~---------------------------------------------------------i~~n~kvH~~GV~SI~ss~~ 221 (339)
T KOG0280|consen 201 --F---------------------------------------------------------IWHNSKVHTSGVVSIYSSPP 221 (339)
T ss_pred --e---------------------------------------------------------eeecceeeecceEEEecCCC
Confidence 0 01112348899999998887
Q ss_pred C--EEEEEECCCcEEEEECC-CCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE------EEeccC
Q 005646 366 N--YLLSASIDKTVRLWRVG-NDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV------DWVDIR 436 (686)
Q Consensus 366 ~--~L~s~s~Dg~V~iWd~~-~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~------~~~~~~ 436 (686)
. ++++|+.|-.|++||.+ -++++..-.-.+.|+.+.++|.....++.++.-.-.+|-++...... ....|.
T Consensus 222 ~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hd 301 (339)
T KOG0280|consen 222 KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHD 301 (339)
T ss_pred CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccccc
Confidence 5 99999999999999998 57788777778999999999955444444444444677777654322 122334
Q ss_pred CcEEEEEEccCCCEEEEEe
Q 005646 437 QIVTAVCYRPDGQGGIVGS 455 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs 455 (686)
+.+..-.|......|++++
T Consensus 302 Sl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 302 SLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred ceeeccccccccceeeeee
Confidence 4444444433324566643
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.9e-09 Score=109.86 Aligned_cols=249 Identities=17% Similarity=0.253 Sum_probs=163.5
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPE 292 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~ 292 (686)
++-++......-.||.+.+....... -.+.+|...|+.|.|.|. ...|||++.|-.++.||+.+..
T Consensus 82 ~~wiVsts~qkaiiwnlA~ss~~aIe----f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--------- 148 (1081)
T KOG0309|consen 82 PYWIVSTSNQKAIIWNLAKSSSNAIE----FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--------- 148 (1081)
T ss_pred ceeEEecCcchhhhhhhhcCCccceE----EEEecCccceeccccCCCCCcceeeccccccceeeeccCCC---------
Confidence 34455666777778887654432211 236789999999999985 5589999999999999997654
Q ss_pred CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEE
Q 005646 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA 371 (686)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~ 371 (686)
.++..+......-..++|+-.. .+++.
T Consensus 149 ----------------------------------------------------~p~ys~~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 149 ----------------------------------------------------RPFYSTSSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred ----------------------------------------------------cceeeeecccccCceeeecccCcchhhh
Confidence 2333333344455788898765 77777
Q ss_pred ECCCcEEEEECCCCe-eeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--EEEEeccCCcEEEEEEccC
Q 005646 372 SIDKTVRLWRVGNDH-CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWVDIRQIVTAVCYRPD 447 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~-~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~~~~V~~v~~spd 447 (686)
+..+.|++||++.+. ++..++ |...|+.++|+......+.+++.||+|+.||..... .........+|..-+|.|-
T Consensus 177 shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pf 256 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPF 256 (1081)
T ss_pred ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccccc
Confidence 888899999998764 555555 889999999987667789999999999999987543 3345556778888889997
Q ss_pred CCEEEEEec--CCcEEEEeCCCCeeeee---eeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeE
Q 005646 448 GQGGIVGSM--MGDCRFYNVSDNHLELD---AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK 522 (686)
Q Consensus 448 g~~l~~gs~--dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~ 522 (686)
|...++--. +..+.+++.++...... ....+ ....+|...|..+.|-.... ..+..|
T Consensus 257 g~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pV-h~F~GH~D~V~eFlWR~r~e---~~~d~d-------------- 318 (1081)
T KOG0309|consen 257 GEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPV-HTFVGHDDVVLEFLWRKRKE---CDGDYD-------------- 318 (1081)
T ss_pred CceeEeccccCCeeeeeccccchhhhhccccCCcce-eeecCcchHHHHHhhhhccc---ccCCCC--------------
Confidence 665544322 23555665544332211 00011 11344555555555543110 000000
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 523 YKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 523 ~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
...-.|+|-|.|.++++|-+.+.
T Consensus 319 -~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 319 -SRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred -ccceeEEEeecCCceEeeeccHH
Confidence 02246888899999999988663
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.2e-06 Score=92.11 Aligned_cols=180 Identities=11% Similarity=0.050 Sum_probs=111.4
Q ss_pred CCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEE-
Q 005646 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVC- 443 (686)
Q Consensus 365 ~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~- 443 (686)
++.++.++.++.|..+|..+++.+........+.+.-.. .++.++.++.+|.|+.||..+++.+-..........+.
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 447888889999999999999998877644444332221 34577778889999999999998774443332211110
Q ss_pred -Ecc--CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC-CCCCeEEEEeCCCcEEEEeCCcc
Q 005646 444 -YRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP-QDSSKVMVSCADSQVRILQGPNV 519 (686)
Q Consensus 444 -~sp--dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp-~~~~~l~~~s~D~~I~iwd~~~~ 519 (686)
-+| .+..++++..+|.+..+|+.+++........... ..........+.-+| -.+..+++++.++.++.+|..+.
T Consensus 183 ~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~-g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 183 SASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK-GRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred CCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCC-CCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 011 2246788888999999999888765432211000 000000000010011 02356777788888888887653
Q ss_pred ee-E----------cCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 520 IG-K----------YKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 520 ~~-~----------~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.. | ..++.+|+.++.||.|+.+|..+++
T Consensus 262 ~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 262 RVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred cEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCc
Confidence 11 1 1156778888888999999988775
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3e-08 Score=105.92 Aligned_cols=155 Identities=19% Similarity=0.331 Sum_probs=106.4
Q ss_pred CeeEEEeeCCC---EEEEEECCCcEEEEECCC--CeeeeE--eeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 356 EILDLSWSKNN---YLLSASIDKTVRLWRVGN--DHCLRV--FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 356 ~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~--~~~~~~--~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
.|-+..|+|.- +-+.......-.+|++.. .+.+.. .+|...|+.+.|+|++...+++++.|-.|..||+++..
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 45567777654 333333344455788753 233333 23899999999999999999999999999999999865
Q ss_pred E--EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 429 V--VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 429 ~--~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
. ..+..-+...+.|+|+--...+.+.+..+.|++||++.+.-.+- ..+.|...|+++.|...-...+++.+
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~-------s~K~~vs~vn~~~fnr~~~s~~~s~~ 221 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLC-------SLKGHVSSVNSIDFNRFKYSEIMSSS 221 (1081)
T ss_pred cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceE-------EecccceeeehHHHhhhhhhhhcccC
Confidence 3 24555566778899988555666667888899999987764321 13346777888888875444555555
Q ss_pred CCCcEEEEeCC
Q 005646 507 ADSQVRILQGP 517 (686)
Q Consensus 507 ~D~~I~iwd~~ 517 (686)
.|++|+.||..
T Consensus 222 ~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 222 NDGTVKFWDYS 232 (1081)
T ss_pred CCCceeeeccc
Confidence 55666655543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=89.63 Aligned_cols=160 Identities=13% Similarity=0.120 Sum_probs=100.7
Q ss_pred eEEeccCCCCeeEEEee-CCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeE-----EEEEeecCCCEEEEEE-----c
Q 005646 347 LHEFHGHSGEILDLSWS-KNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVT-----CVHFNPVDDNYFISGS-----I 415 (686)
Q Consensus 347 ~~~l~~h~~~V~~l~~s-~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~-----~v~fsp~~~~~l~sgs-----~ 415 (686)
.+.+..|.++-.+-+.+ ++..++++..||.+.+.+.+.. ..+.|.-++. +..... .++.+.++. .
T Consensus 82 ~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~---~~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~ 157 (319)
T KOG4714|consen 82 FKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKD---LALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNA 157 (319)
T ss_pred eeeeeccCCCCCcccccccCCceEecCCCceEEEEechHH---Hhhhhhcccccccccccceee-cccEEecCCcceEee
Confidence 34444444433333333 3338899999999999987652 1111211111 111222 344444432 1
Q ss_pred CCcEEEEecCCCcEE-EEeccCCcEEEEEEccC-CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 416 DGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 416 Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spd-g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
-+..++|+++..+.. ........|++++-+|. .+.+++|+.||.+.+||.+.... .....++|..+|..+-
T Consensus 158 ~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-------p~S~l~ahk~~i~eV~ 230 (319)
T KOG4714|consen 158 QDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-------PVSLLKAHKAEIWEVH 230 (319)
T ss_pred ccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc-------hHHHHHHhhhhhhhee
Confidence 234566666544332 11112233999999994 55677899999999999987632 2234577889999999
Q ss_pred EeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 494 FLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
|+|.++..|++++.||.+-.||..
T Consensus 231 FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 231 FHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred ccCCCchheeEecCCCcEEEEcCC
Confidence 999999999999999999999976
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.8e-06 Score=89.42 Aligned_cols=249 Identities=12% Similarity=0.086 Sum_probs=152.1
Q ss_pred cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeecc
Q 005646 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 211 ~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
..++.+++++.++.+..+|.............. . ... ... .++..++.++.|+.+..+|..+|+.+.....
T Consensus 63 v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-~---~~~---~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 133 (377)
T TIGR03300 63 VAGGKVYAADADGTVVALDAETGKRLWRVDLDE-R---LSG---GVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKL 133 (377)
T ss_pred EECCEEEEECCCCeEEEEEccCCcEeeeecCCC-C---ccc---ceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeecc
Confidence 346677888888888888865443321111110 0 111 111 2466788888999999999988875433321
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEE
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLS 370 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s 370 (686)
. +.+.+.-...++.++.
T Consensus 134 ~---------------------------------------------------------------~~~~~~p~v~~~~v~v 150 (377)
T TIGR03300 134 S---------------------------------------------------------------SEVLSPPLVANGLVVV 150 (377)
T ss_pred C---------------------------------------------------------------ceeecCCEEECCEEEE
Confidence 1 0011000012346677
Q ss_pred EECCCcEEEEECCCCeeeeEeeCCCCeEE------EEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCc------
Q 005646 371 ASIDKTVRLWRVGNDHCLRVFPHSNYVTC------VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI------ 438 (686)
Q Consensus 371 ~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~------v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~------ 438 (686)
++.++.|..||..+++.+..+........ ... .+..++.+..+|.|..+|+.+++.+-......+
T Consensus 151 ~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~ 227 (377)
T TIGR03300 151 RTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTEL 227 (377)
T ss_pred ECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCch
Confidence 77899999999999998887764332211 112 234778888899999999999986632221100
Q ss_pred --EEEEEEcc--CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 005646 439 --VTAVCYRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (686)
Q Consensus 439 --V~~v~~sp--dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iw 514 (686)
...+.-+| .+..+++++.+|.++.||..+++....... ........ .+..+++++.|+.+..+
T Consensus 228 ~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~----------~~~~~p~~---~~~~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 228 ERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA----------SSYQGPAV---DDNRLYVTDADGVVVAL 294 (377)
T ss_pred hhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc----------CCccCceE---eCCEEEEECCCCeEEEE
Confidence 00111112 355788888999999999998876543221 01112222 34577778888989888
Q ss_pred eCCccee-E-----------c--CCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 515 QGPNVIG-K-----------Y--KDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 515 d~~~~~~-~-----------~--~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
|..+... + + ..+.+|++++.||.|+++|..+++
T Consensus 295 d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 295 DRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred ECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCC
Confidence 8754311 1 0 156788899999999999988876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.6e-06 Score=87.97 Aligned_cols=113 Identities=13% Similarity=0.020 Sum_probs=73.8
Q ss_pred CCeeEEEeeCCC-EE-EEEECC--CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-CC--cEEEEecCCC
Q 005646 355 GEILDLSWSKNN-YL-LSASID--KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DG--KVRIWAVLSC 427 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L-~s~s~D--g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg--~V~iwd~~~~ 427 (686)
+.+....|+||| .| ++.+.+ ..|.++|+.++.......+........|+| |++.|+-.+. .+ .|.++|+.++
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence 445567899999 44 444444 467777888876544433444445668999 8887766653 33 5888888888
Q ss_pred cEEEEeccCCcEEEEEEccCCCEEEEEecC---------CcEEEEeCCCCee
Q 005646 428 HVVDWVDIRQIVTAVCYRPDGQGGIVGSMM---------GDCRFYNVSDNHL 470 (686)
Q Consensus 428 ~~~~~~~~~~~V~~v~~spdg~~l~~gs~d---------g~i~iwd~~~~~~ 470 (686)
+.......... ...|+|||+.++..... ..|.+.|+.++..
T Consensus 312 ~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 312 SVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred CeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 76543322211 24899999998876654 2577778876653
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=8e-08 Score=96.64 Aligned_cols=86 Identities=24% Similarity=0.528 Sum_probs=73.6
Q ss_pred EEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEe--eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEec
Q 005646 348 HEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (686)
Q Consensus 348 ~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~--~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~ 424 (686)
..+-||-..+++++|+||+ +++++..|..||+-....-..+..| +|...|..++.-+ +..|++||.|++|++||+
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEEec
Confidence 3446899999999999999 9999999999999888777666555 4999999999976 556899999999999999
Q ss_pred CCCcEEEEecc
Q 005646 425 LSCHVVDWVDI 435 (686)
Q Consensus 425 ~~~~~~~~~~~ 435 (686)
.+++.+...+.
T Consensus 223 ~sgk~L~t~dl 233 (390)
T KOG3914|consen 223 TSGKLLDTCDL 233 (390)
T ss_pred ccCCcccccch
Confidence 99998755543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-05 Score=81.55 Aligned_cols=144 Identities=13% Similarity=0.166 Sum_probs=117.6
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCC-cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDG-VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg-~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
+|.+.|.-..+.-+++-++.|..|| .+-|+|..+++.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~------------------------------------------ 394 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV------------------------------------------ 394 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE------------------------------------------
Confidence 5888899999988888899999998 899999887762
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEee
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNP 404 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp 404 (686)
..+...-+.|.++..+++| +++.+.....+.+.|+.++.....-+ ..+-|+.+.|+|
T Consensus 395 ---------------------kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~ 453 (668)
T COG4946 395 ---------------------KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP 453 (668)
T ss_pred ---------------------EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC
Confidence 2334456789999999999 78888878889999999997654433 678899999999
Q ss_pred cCCCEEEEEEcCC----cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEe
Q 005646 405 VDDNYFISGSIDG----KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS 455 (686)
Q Consensus 405 ~~~~~l~sgs~Dg----~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs 455 (686)
+.++||-+--+| .|+++|+.++++.........=.+-+|.|||++|..-+
T Consensus 454 -nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 454 -NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred -CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 999998876665 59999999999887766666556778999999887643
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-05 Score=87.15 Aligned_cols=177 Identities=8% Similarity=0.083 Sum_probs=119.5
Q ss_pred EEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEE---------ecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 409 YFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVG---------SMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 409 ~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~g---------s~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
+++.|...|+|.++|+.++.+. .+.-|...|.++.|.-..+++-.+ ..-+.+.+-|++++.-. .+
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk-----~f 513 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK-----RF 513 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccc-----cc
Confidence 6788999999999999998876 455677888888887666554333 23345777888876533 23
Q ss_pred eccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEc-C------------------
Q 005646 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKY-K------------------ 524 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~-~------------------ 524 (686)
++..+....+|..+..+. .+.+|++...|.-+.+||..+ .+.|+ |
T Consensus 514 R~l~~~despI~~irvS~-~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~ 592 (1062)
T KOG1912|consen 514 RGLQKPDESPIRAIRVSS-SGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSE 592 (1062)
T ss_pred ccCCCCCcCcceeeeecc-cCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhh
Confidence 333455668899999998 789999999999999999732 23333 1
Q ss_pred --------------------------------------------CCCEEEEEeCCCcEEEEeCCCCCCCCcccc----cc
Q 005646 525 --------------------------------------------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQA----KT 556 (686)
Q Consensus 525 --------------------------------------------dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~----~~ 556 (686)
.+..|+.|..+|++.+||+........... .-
T Consensus 593 n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p~~ra~ 672 (1062)
T KOG1912|consen 593 NLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWKDDILVVGDVEGNLVVWDLGRRQSRGVRDSPDPRAH 672 (1062)
T ss_pred ceeeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhccCCeeEeecccCceeEEecccccccCccCCCCchhh
Confidence 577899999999999999876542110000 00
Q ss_pred ccccccccC-CcEEEecCCCCcCCCCCCCCcccccC
Q 005646 557 IRSLERFTT-NASIAIPWCGLKCGNAEKEPQLHVSD 591 (686)
Q Consensus 557 ~~~~~~~~~-~~~v~~s~~g~~~~~~~~g~~l~~~~ 591 (686)
...+..... ...+++--++...|+.+.-+.+..+.
T Consensus 673 ~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~sia 708 (1062)
T KOG1912|consen 673 SLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIA 708 (1062)
T ss_pred heecccCCCCceEEEEecCcceecccccceeeeeec
Confidence 111111111 24566666777888887777766653
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-07 Score=88.94 Aligned_cols=237 Identities=17% Similarity=0.269 Sum_probs=140.8
Q ss_pred eeecCCCccceeeccceEEEEEcCCccc-cccccccCceecccC------------CceEEEEEeeCCC--EEEEEeCCC
Q 005646 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSK-ELSALYKGQEIQAHD------------GSILTMKFSPDGQ--YLASAGDDG 272 (686)
Q Consensus 208 ~~s~~~~~l~~g~~d~~v~vw~~~~~~~-~~~~~~~~~~l~~H~------------~~I~~l~fspdg~--~Lasgs~Dg 272 (686)
.|...|.++++|...|+|.++.-.+... +.. --.++++|. ..|..|.|..++. .++..+.|+
T Consensus 33 efd~tg~YlatGDkgGRVvlfer~~s~~ceyk---f~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdk 109 (460)
T COG5170 33 EFDETGLYLATGDKGGRVVLFEREKSYGCEYK---FFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDK 109 (460)
T ss_pred EeccccceEeecCCCceEEEeecccccccchh---hhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCc
Confidence 3455678999999999999997655431 111 112455665 3588899977643 455566899
Q ss_pred cEEEEEeecCeeee--eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe
Q 005646 273 VVRLWQVVEDERLT--EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (686)
Q Consensus 273 ~I~vWd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (686)
+|++|.+....... +-.+.+ .+.....+.+... +...+. +-+....++. .+|.+..
T Consensus 110 tiKlWKiyeknlk~va~nnls~------~~~~~~~g~~~s~-----~~l~lp--rls~hd~iia---------a~p~rvy 167 (460)
T COG5170 110 TIKLWKIYEKNLKVVAENNLSD------SFHSPMGGPLTST-----KELLLP--RLSEHDEIIA---------AKPCRVY 167 (460)
T ss_pred eeeeeeeecccchhhhcccccc------ccccccCCCcCCH-----HHhhcc--cccccceEEE---------eccceec
Confidence 99999987643111 111000 0000000000000 000000 0000011111 1222333
Q ss_pred -ccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCe-eeeE--ee-CC-----CCeEEEEEeecCCCEEEEEEcCCcEE
Q 005646 351 -HGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH-CLRV--FP-HS-----NYVTCVHFNPVDDNYFISGSIDGKVR 420 (686)
Q Consensus 351 -~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~-~~~~--~~-h~-----~~V~~v~fsp~~~~~l~sgs~Dg~V~ 420 (686)
..|.--|.+++++.+...+.++.|=.|.+|++.-.. +... +. |. .-|++..|+|...+.|.-.+..|.|+
T Consensus 168 aNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 168 ANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred cccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 468889999999998844445568899999987432 2222 22 32 45899999997778888888899999
Q ss_pred EEecCCCcEE-----------E------EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 421 IWAVLSCHVV-----------D------WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 421 iwd~~~~~~~-----------~------~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
+-|++...+. . +......|..+.|+++|+++++-+. -+++|||++..+-
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~ 313 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN 313 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence 9999843221 0 1112345788999999999987654 5899999986553
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-07 Score=92.40 Aligned_cols=100 Identities=17% Similarity=0.272 Sum_probs=86.5
Q ss_pred EEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE--EEeccCCcEEEEEEccC
Q 005646 370 SASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDIRQIVTAVCYRPD 447 (686)
Q Consensus 370 s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~V~~v~~spd 447 (686)
.++....+.+|....+.+...+.|-.-++.|+|+| |+++++++..|.+||+-.......+ ...+|+.-|..++..++
T Consensus 127 kagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred ecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence 45566778888888888888889999999999999 9999999999999999888777666 34578999999999876
Q ss_pred CCEEEEEecCCcEEEEeCCCCeee
Q 005646 448 GQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 448 g~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
. .|++|+.|+++++||+.+++..
T Consensus 206 ~-~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 206 Y-LLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred c-eeeecCCCCcEEEEecccCCcc
Confidence 4 5899999999999999998865
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.1e-05 Score=87.70 Aligned_cols=330 Identities=18% Similarity=0.223 Sum_probs=190.4
Q ss_pred ecccCcceeeecCCCccceeeccceEEEEEcCC-----------------------cccccc-------c----ccc---
Q 005646 200 VDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKK-----------------------RSKELS-------A----LYK--- 242 (686)
Q Consensus 200 ~~~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~-----------------------~~~~~~-------~----~~~--- 242 (686)
++..-.+.+++||++.++..+.++++.+-...- ..++.. . +..
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 444556778899999999999888887654211 001100 0 000
Q ss_pred ----CceecccCCceEEEEEeeCCCEEEEEeC---C---CcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeee
Q 005646 243 ----GQEIQAHDGSILTMKFSPDGQYLASAGD---D---GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLF 312 (686)
Q Consensus 243 ----~~~l~~H~~~I~~l~fspdg~~Lasgs~---D---g~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (686)
...+. +...-..|+|-.||+|+|+.+. . ..+|||+-+ |.....-.... +.-..+.
T Consensus 199 ~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~-------------gLe~~l~ 263 (928)
T PF04762_consen 199 PKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD-------------GLEGALS 263 (928)
T ss_pred CccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC-------------CccCCcc
Confidence 01122 4445678999999999998864 2 579999854 54322221111 1123345
Q ss_pred eccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeee--
Q 005646 313 MDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLR-- 389 (686)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~-- 389 (686)
|.+.+..+...-+......++.|..+-.+..+ ....+......|..|.|++++ .||..-.|. |.+|-..+.....
T Consensus 264 WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge-F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKq 341 (928)
T PF04762_consen 264 WRPSGNLIASSQRLPDRHDVVFFERNGLRHGE-FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQ 341 (928)
T ss_pred CCCCCCEEEEEEEcCCCcEEEEEecCCcEeee-EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEE
Confidence 55555544444443444444444444332221 111112456688999999999 777666554 9999998876332
Q ss_pred Ee--eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC----C----------------CcEE----------------E
Q 005646 390 VF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL----S----------------CHVV----------------D 431 (686)
Q Consensus 390 ~~--~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~----~----------------~~~~----------------~ 431 (686)
.+ .....+..+.|+|.+...|.....+|.+..++.. . |..+ .
T Consensus 342 ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~ 421 (928)
T PF04762_consen 342 EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSY 421 (928)
T ss_pred EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhce
Confidence 22 2445566799999888888888887877666542 1 1111 1
Q ss_pred EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee------eeeeEEee----ccccCCCCCeEEEEEeCCCCCe
Q 005646 432 WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE------LDAEICVH----SKKKAPCKRITGFQFLPQDSSK 501 (686)
Q Consensus 432 ~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~------~~~~~~~~----~~~~~~~~~I~~l~fsp~~~~~ 501 (686)
......+|.+++|++++..+++-..||.+.+|........ ....+... .........+..+.|.. +...
T Consensus 422 ~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 500 (928)
T PF04762_consen 422 ELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN-DDTL 500 (928)
T ss_pred EEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeC-CCEE
Confidence 2234577999999999988999999999999996543221 11111110 01112345678888887 4454
Q ss_pred EEEEeCC---CcEEEEeCCcc------------------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 502 VMVSCAD---SQVRILQGPNV------------------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 502 l~~~s~D---~~I~iwd~~~~------------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+++...+ ..+.+++.... ....++...++.-..||.|...+.....
T Consensus 501 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 501 LVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred EEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence 4444443 56777765211 1111233335666678888866665543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.3e-06 Score=84.58 Aligned_cols=241 Identities=15% Similarity=0.209 Sum_probs=146.5
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCC--CEEEE-----EeCCCcEEEEE
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG--QYLAS-----AGDDGVVRLWQ 278 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg--~~Las-----gs~Dg~I~vWd 278 (686)
+..|+.++.++|-- ....++|+++..+-.+. ....++ ...|....|+|.| .-||. .+.++.++||.
T Consensus 136 ~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~----p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~s 208 (561)
T COG5354 136 VLKFSIDDKYVARV-VGSSLYIHEITDNIEEH----PFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILS 208 (561)
T ss_pred eeeeeecchhhhhh-ccCeEEEEecCCccccC----chhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEE
Confidence 56677777776655 56678999863222111 111121 3568888999964 34554 46789999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEee---ccCCceEEEeCCccccccCCCeEEeccCCC
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR---RTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 355 (686)
+..+..+....+.......+.+.. .+...+.... ++.....---+..++++.+.-+....+-.+
T Consensus 209 Ip~~s~l~tk~lfk~~~~qLkW~~-------------~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~ 275 (561)
T COG5354 209 IPKNSVLVTKNLFKVSGVQLKWQV-------------LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKD 275 (561)
T ss_pred ccCCCeeeeeeeEeecccEEEEec-------------CCceEEEEEEEeeecccceeccceEEEEeecccccceeccccc
Confidence 987666555444333222222221 1111111111 111111111122233333444444446688
Q ss_pred CeeEEEeeCCC---EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC---CcEEEEecCCCcE
Q 005646 356 EILDLSWSKNN---YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---GKVRIWAVLSCHV 429 (686)
Q Consensus 356 ~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D---g~V~iwd~~~~~~ 429 (686)
+|.+..|.|.+ -+++|-++.++.++|++.. +..+.....=+.+.|+| ..++++.++.| |.+-+||......
T Consensus 276 pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 276 PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred cceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccC-cccEEEEecCCccccceEEeccCCceE
Confidence 99999999987 4455678999999999877 44444455557788999 99999998766 7799999987765
Q ss_pred EEEeccCCcEEEEEEccCCCEEEEEec------CCcEEEEeCCCCe
Q 005646 430 VDWVDIRQIVTAVCYRPDGQGGIVGSM------MGDCRFYNVSDNH 469 (686)
Q Consensus 430 ~~~~~~~~~V~~v~~spdg~~l~~gs~------dg~i~iwd~~~~~ 469 (686)
+...-.....+-+.|+|||+++.+... |..|.|||+....
T Consensus 353 ~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 353 VAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred EEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 532222223345679999999888643 7789999987543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.6e-07 Score=85.50 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=74.1
Q ss_pred CcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE--EEeccCCcEEEEEEcc-CCCE
Q 005646 375 KTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDIRQIVTAVCYRP-DGQG 450 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~V~~v~~sp-dg~~ 450 (686)
+..+.|+++..+.+..-. ....|++++-+|...+++++|+.||.+.+||.++.... .+..|+.++..+-|+| ++..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 345667665444332222 33559999999977788899999999999999987543 4557889999999999 7889
Q ss_pred EEEEecCCcEEEEeCCCC
Q 005646 451 GIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 451 l~~gs~dg~i~iwd~~~~ 468 (686)
|++++.||.+.-||.++.
T Consensus 239 Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDASTT 256 (319)
T ss_pred eeEecCCCcEEEEcCCCc
Confidence 999999999999998863
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-05 Score=96.11 Aligned_cols=114 Identities=11% Similarity=0.097 Sum_probs=86.9
Q ss_pred CeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEe-------------e-C--------CCCeEEEEEeecCCCEEE
Q 005646 356 EILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVF-------------P-H--------SNYVTCVHFNPVDDNYFI 411 (686)
Q Consensus 356 ~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~-------------~-h--------~~~V~~v~fsp~~~~~l~ 411 (686)
....|+++|++ ++++-+.++.|++||+.++...... . + -.....++++| ++++++
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYV 819 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYV 819 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEE
Confidence 45679999998 4455667799999999876532111 0 0 11246889999 889999
Q ss_pred EEEcCCcEEEEecCCCcEEEEeccC--------------CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 412 SGSIDGKVRIWAVLSCHVVDWVDIR--------------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 412 sgs~Dg~V~iwd~~~~~~~~~~~~~--------------~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
+-+.+++|++||..++.+....+.. .....++++++|+.+++-+.++.|++||+.++..
T Consensus 820 ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 820 ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 9999999999999988776544321 2467899999999888888999999999988765
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.8e-05 Score=75.21 Aligned_cols=249 Identities=14% Similarity=0.219 Sum_probs=152.8
Q ss_pred eeeecCCCccceeec---cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC-CCcEEEEEeecC
Q 005646 207 ERVRLNEEDAMFCSK---VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVED 282 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~---d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~vWd~~~~ 282 (686)
..+.++.+.|.++.. .+.|-.|.++.....+..+-+ +.+.++. -+.++++++|++|+++.. -|.|.++-++..
T Consensus 45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~-~~~~g~~--p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d 121 (346)
T COG2706 45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR-QTLPGSP--PCYVSVDEDGRFVFVANYHSGSVSVYPLQAD 121 (346)
T ss_pred EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec-cccCCCC--CeEEEECCCCCEEEEEEccCceEEEEEcccC
Confidence 455556655655543 477888887765333332222 2233332 388999999999999976 478999988653
Q ss_pred eeeeee-ccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 283 ERLTEV-DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 283 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
..+... ..... . +.-.+. +.-..-+....
T Consensus 122 G~l~~~v~~~~h---------------------------------~----------------g~~p~~-rQ~~~h~H~a~ 151 (346)
T COG2706 122 GSLQPVVQVVKH---------------------------------T----------------GSGPHE-RQESPHVHSAN 151 (346)
T ss_pred Cccccceeeeec---------------------------------C----------------CCCCCc-cccCCccceee
Confidence 211110 00000 0 000000 00112266788
Q ss_pred eeCCC-EEEEEEC-CCcEEEEECCCCeeeeE----eeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecCC--CcEEEE
Q 005646 362 WSKNN-YLLSASI-DKTVRLWRVGNDHCLRV----FPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLS--CHVVDW 432 (686)
Q Consensus 362 ~s~~~-~L~s~s~-Dg~V~iWd~~~~~~~~~----~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~--~~~~~~ 432 (686)
+.|++ +|++..- --.|.+|++..++.... +.....-..|.|+| ++++.+... .+++|-+|.... ++...+
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 89999 7666643 34689999997765432 23566789999999 898877665 589999999887 332222
Q ss_pred e---------ccCCcEEEEEEccCCCEEEEEec-CCcEEEEeCCCC--eeeeeeeEEeeccccCCCCCeEEEEEeCCCCC
Q 005646 433 V---------DIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDN--HLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (686)
Q Consensus 433 ~---------~~~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~ 500 (686)
. .......+|.++|||++|.++.. ...|-+|.+... ++.+... ...+......+.|.+ .++
T Consensus 231 Q~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~------~~teg~~PR~F~i~~-~g~ 303 (346)
T COG2706 231 QTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI------TPTEGQFPRDFNINP-SGR 303 (346)
T ss_pred eeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE------eccCCcCCccceeCC-CCC
Confidence 1 22345778999999999988754 346888877643 4333222 223334477899999 667
Q ss_pred eEEEEeCC-CcEEEEeC
Q 005646 501 KVMVSCAD-SQVRILQG 516 (686)
Q Consensus 501 ~l~~~s~D-~~I~iwd~ 516 (686)
+|+++..+ ..|.+|..
T Consensus 304 ~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 304 FLIAANQKSDNITVFER 320 (346)
T ss_pred EEEEEccCCCcEEEEEE
Confidence 77766654 55776653
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.4e-06 Score=91.19 Aligned_cols=233 Identities=15% Similarity=0.187 Sum_probs=160.9
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC------C------CEEEEEeCCCcE
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD------G------QYLASAGDDGVV 274 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g------~~Lasgs~Dg~I 274 (686)
.+...++.-++.-+....|.|-|.. .+...+.+..|...|+.+.|.|- + -+||++...|.|
T Consensus 19 ~A~Dw~~~GLiAygshslV~VVDs~-------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 19 NAADWSPSGLIAYGSHSLVSVVDSR-------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccccCccceEEEecCceEEEEehh-------hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 3444455555555566677777643 23335778889999999999873 1 257888888999
Q ss_pred EEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC
Q 005646 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (686)
Q Consensus 275 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 354 (686)
.+||+..+.. +..+..|.
T Consensus 92 il~d~~~~s~--------------------------------------------------------------~~~l~~~~ 109 (1062)
T KOG1912|consen 92 ILVDFVLASV--------------------------------------------------------------INWLSHSN 109 (1062)
T ss_pred EEEEehhhhh--------------------------------------------------------------hhhhcCCC
Confidence 9999977642 23345578
Q ss_pred CCeeEEEeeCCC-----EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC--
Q 005646 355 GEILDLSWSKNN-----YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-- 426 (686)
Q Consensus 355 ~~V~~l~~s~~~-----~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-- 426 (686)
.+|.++.|-+.. .|+.-....+|.+|+..+|+.+..+. ......|+.+.|-+.+.|..-+..|.|-+-+.-.
T Consensus 110 ~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~s 189 (1062)
T KOG1912|consen 110 DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLS 189 (1062)
T ss_pred cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCC
Confidence 888999997632 67777778899999999999998887 4566778999998888888888888887776532
Q ss_pred -----CcEEE-EeccCC-----------------c--------EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeee
Q 005646 427 -----CHVVD-WVDIRQ-----------------I--------VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE 475 (686)
Q Consensus 427 -----~~~~~-~~~~~~-----------------~--------V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~ 475 (686)
++.+. ..+|.. + ...++|+|.-+.++.......+.++|++-........
T Consensus 190 ep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvp 269 (1062)
T KOG1912|consen 190 EPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVP 269 (1062)
T ss_pred CCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEE
Confidence 11111 111111 0 1236789987777777788899999998665544332
Q ss_pred EEeeccccCCCCCeEEEEEeCC-CCCeEEEEeCCCcEEEEeC
Q 005646 476 ICVHSKKKAPCKRITGFQFLPQ-DSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 476 ~~~~~~~~~~~~~I~~l~fsp~-~~~~l~~~s~D~~I~iwd~ 516 (686)
+. .+.+.-+++.|+ ....|+..-.||.+.+|-.
T Consensus 270 ie--------r~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 270 IE--------RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred ec--------cCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 21 133445666664 3346778889999999953
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.4e-05 Score=76.92 Aligned_cols=179 Identities=16% Similarity=0.160 Sum_probs=114.2
Q ss_pred CCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe-ccC----Cc
Q 005646 364 KNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIR----QI 438 (686)
Q Consensus 364 ~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~~----~~ 438 (686)
.++.+++++.++.|..||..+|+.+..+.....+..... . .+..++.++.++.|+.+|..+++++-.. ... ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~-~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPV-V-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEE-E-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceee-e-cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 455888889999999999999999988874433322222 2 5667777888999999999999987542 211 11
Q ss_pred EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCC---CCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP---CKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 439 V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
........++..++++..++.|..+|+.+++......... .....+ ...+.+-.... ++ .++++..++.+..+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE-PRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVD 189 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST-T-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEE
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC-CCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEE
Confidence 2233333348889999889999999999998765433211 000000 01112222222 22 666666666422225
Q ss_pred CCcce-----------e-EcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 516 GPNVI-----------G-KYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 516 ~~~~~-----------~-~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..+.. . ...++..|+.++.|+.|+.||+.+++
T Consensus 190 ~~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 190 LATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp TTTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred CCCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 54431 1 34478888888899999999999986
|
... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1e-06 Score=89.68 Aligned_cols=243 Identities=16% Similarity=0.172 Sum_probs=161.2
Q ss_pred eecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC-CCcEEEEEeecCeeeee
Q 005646 209 VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVEDERLTE 287 (686)
Q Consensus 209 ~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~vWd~~~~~~~~~ 287 (686)
+....++..+++.||.++.|.-.. .....-...+..|.+.|.+++.+-+|.++.|.+. |..++++|+.+-..+.-
T Consensus 16 ~~tka~fiiqASlDGh~KFWkKs~----isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminm 91 (558)
T KOG0882|consen 16 FPTKAKFIIQASLDGHKKFWKKSR----ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINM 91 (558)
T ss_pred eeehhheEEeeecchhhhhcCCCC----ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhh
Confidence 344557888999999999995322 1122223456789999999999999999999888 99999999988776655
Q ss_pred eccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-
Q 005646 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN- 366 (686)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~- 366 (686)
++....+..+..+... ...+..+..+.... ....+++...- .......-.-|..+|..+.+++.+
T Consensus 92 iKL~~lPg~a~wv~sk-Gd~~s~IAVs~~~s-----------g~i~VvD~~~d--~~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 92 IKLVDLPGFAEWVTSK-GDKISLIAVSLFKS-----------GKIFVVDGFGD--FCQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred cccccCCCceEEecCC-CCeeeeEEeecccC-----------CCcEEECCcCC--cCccceecccccCceEEEEeecccc
Confidence 5554443333222221 11122222211111 11111111100 011223334599999999999988
Q ss_pred EEEEEECCCcEEEEECCC------CeeeeEee----------CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 367 YLLSASIDKTVRLWRVGN------DHCLRVFP----------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~------~~~~~~~~----------h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
.+++....|.|.-|.... ......+. .....+++.|+| ++..+.+-+.|.+||+++.++++++
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhh
Confidence 888888899999998873 11211221 456789999999 9999999999999999999988654
Q ss_pred EEec---------------------------------cC-CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee
Q 005646 431 DWVD---------------------------------IR-QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 431 ~~~~---------------------------------~~-~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
..++ +. ..-+.++|...|++|+-|+.=| |++.++.++...
T Consensus 237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ 310 (558)
T KOG0882|consen 237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVV 310 (558)
T ss_pred hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEE
Confidence 3211 00 1235688999999999887765 889998887754
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-05 Score=75.94 Aligned_cols=190 Identities=13% Similarity=0.095 Sum_probs=128.2
Q ss_pred CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeecc
Q 005646 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 212 ~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
....++.|+..|...+|........+ +....|...|+-+.=..+ .--+..++.|.++++.++..+....
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~------~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~---- 152 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHL------YQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF---- 152 (344)
T ss_pred cccEEEeccccceeeeecccCcccce------eeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc----
Confidence 34577888999999999876432211 111223333322211111 2246677889999999886543110
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCC--CeeEEEeeCCC-E
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG--EILDLSWSKNN-Y 367 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~--~V~~l~~s~~~-~ 367 (686)
.-|.. .+.++++++++ +
T Consensus 153 ------------------------------------------------------------~~h~~~~~~ns~~~snd~~~ 172 (344)
T KOG4532|consen 153 ------------------------------------------------------------AVHNQNLTQNSLHYSNDPSW 172 (344)
T ss_pred ------------------------------------------------------------eeeccccceeeeEEcCCCce
Confidence 11222 37889999999 8
Q ss_pred EEEEECCCcEEEEECCCCe--eeeEe--eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE------EEeccCC
Q 005646 368 LLSASIDKTVRLWRVGNDH--CLRVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV------DWVDIRQ 437 (686)
Q Consensus 368 L~s~s~Dg~V~iWd~~~~~--~~~~~--~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~------~~~~~~~ 437 (686)
+++.+....|-.|.+.... .++.. ...+.=.+..|+. ....||++..||++.|||++..... ....|.+
T Consensus 173 ~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG 251 (344)
T KOG4532|consen 173 GSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG 251 (344)
T ss_pred EEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCC
Confidence 8999999999999987542 22212 2555667888998 8899999999999999999976432 2335788
Q ss_pred cEEEEEEccCCC--EEEEEecCCcEEEEeCCCCeeee
Q 005646 438 IVTAVCYRPDGQ--GGIVGSMMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 438 ~V~~v~~spdg~--~l~~gs~dg~i~iwd~~~~~~~~ 472 (686)
.+..+.|+|-|. +|+..-.-+.+.+.|+++.+-.+
T Consensus 252 a~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 252 AFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred ceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 999999998664 45666667889999999876443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.7e-07 Score=62.61 Aligned_cols=35 Identities=40% Similarity=0.900 Sum_probs=33.5
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
+++++|.+.|++|+|+|++++|+||+.|++|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56889999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.3e-07 Score=87.90 Aligned_cols=158 Identities=13% Similarity=0.233 Sum_probs=113.7
Q ss_pred CCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCC
Q 005646 213 EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE 292 (686)
Q Consensus 213 ~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~ 292 (686)
+.+ ++.+.+..|.+-++.+... |.|. -++.|.++.|...++++..|...|.|.+.|+..... .
T Consensus 225 gyh-fs~G~sqqv~L~nvetg~~--------qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq-----G-- 287 (425)
T KOG2695|consen 225 GYH-FSVGLSQQVLLTNVETGHQ--------QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ-----G-- 287 (425)
T ss_pred eee-ecccccceeEEEEeecccc--------cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc-----C--
Confidence 334 4556666777776654322 2333 677899999999899999999999999999986520 0
Q ss_pred CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC-CC-EEEE
Q 005646 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLS 370 (686)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~-~L~s 370 (686)
. ..+.+.+ -|...|++|..-. ++ +|++
T Consensus 288 -~-------------------------------------------------~~~a~rl-yh~Ssvtslq~Lq~s~q~Lma 316 (425)
T KOG2695|consen 288 -N-------------------------------------------------GWCAQRL-YHDSSVTSLQILQFSQQKLMA 316 (425)
T ss_pred -C-------------------------------------------------CcceEEE-EcCcchhhhhhhccccceEee
Confidence 0 0122222 2888999998776 55 9999
Q ss_pred EECCCcEEEEECCCCee---eeEee-CCCCeE--EEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcE
Q 005646 371 ASIDKTVRLWRVGNDHC---LRVFP-HSNYVT--CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIV 439 (686)
Q Consensus 371 ~s~Dg~V~iWd~~~~~~---~~~~~-h~~~V~--~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V 439 (686)
.+++|+|++||++.-+| +..+. |-+.-. -+..++ ....+++++.|...|||.++.++++..+.....+
T Consensus 317 S~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~ 390 (425)
T KOG2695|consen 317 SDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSA 390 (425)
T ss_pred ccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCCCcc
Confidence 99999999999998887 55554 433222 233445 5678888999999999999999998877665543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00023 Score=71.50 Aligned_cols=156 Identities=13% Similarity=0.114 Sum_probs=100.2
Q ss_pred eeEEEee-CCCEEEEEECCCcEEEEECCCCeeeeEee------CCCCeEEEEEeecCCCEEEEEEcC--------CcEEE
Q 005646 357 ILDLSWS-KNNYLLSASIDKTVRLWRVGNDHCLRVFP------HSNYVTCVHFNPVDDNYFISGSID--------GKVRI 421 (686)
Q Consensus 357 V~~l~~s-~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~------h~~~V~~v~fsp~~~~~l~sgs~D--------g~V~i 421 (686)
...+++. +++.|+.+...+ +.++|..+++....+. .....+.+++.| ++++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence 5677777 677777777655 4555999886554443 235688999999 89988776644 56777
Q ss_pred EecCCCcEEEEeccCCcEEEEEEccCCCEEE-EEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCC
Q 005646 422 WAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI-VGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (686)
Q Consensus 422 wd~~~~~~~~~~~~~~~V~~v~~spdg~~l~-~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~ 500 (686)
++.. +++......-...+.++|+||++.|+ +-+..+.|..|++............+.. ........-++++.. ++.
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~g~pDG~~vD~-~G~ 196 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID-FPGGPGYPDGLAVDS-DGN 196 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE--SSSSCEEEEEEEBT-TS-
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE-cCCCCcCCCcceEcC-CCC
Confidence 8877 66555555556678999999999776 5567888999998643321111111111 111113477888888 666
Q ss_pred eEEEEeCCCcEEEEeCC
Q 005646 501 KVMVSCADSQVRILQGP 517 (686)
Q Consensus 501 ~l~~~s~D~~I~iwd~~ 517 (686)
+.++....+.|.+++..
T Consensus 197 l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 197 LWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEEEETTTEEEEEETT
T ss_pred EEEEEcCCCEEEEECCC
Confidence 66666677777777643
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.3e-05 Score=82.54 Aligned_cols=178 Identities=8% Similarity=0.053 Sum_probs=116.8
Q ss_pred CeeEEEeeCCC-E-EEEEECC---CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEE-EEcC--CcEEEEecCCC
Q 005646 356 EILDLSWSKNN-Y-LLSASID---KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFIS-GSID--GKVRIWAVLSC 427 (686)
Q Consensus 356 ~V~~l~~s~~~-~-L~s~s~D---g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~s-gs~D--g~V~iwd~~~~ 427 (686)
.+....|+|+| . ++..+.+ ..|.++|+.+++........+.+....|+| |++.++. .+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence 77889999999 4 5544443 568999999887766655666777889999 8876654 4434 46888898888
Q ss_pred cEEEEeccCCcEEEEEEccCCCEEEEEec-CC--cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 428 HVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 428 ~~~~~~~~~~~V~~v~~spdg~~l~~gs~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
....+...........|+|||+.|+..+. .| .|+++|+.++..... ...+ . ....|+| +++.++.
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl---t~~g------~--~~~~~SP-DG~~Ia~ 335 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV---VFHG------K--NNSSVST-YKNYIVY 335 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC---ccCC------C--cCceECC-CCCEEEE
Confidence 77666555544456789999998877654 23 578888877664321 1111 1 1248999 6666655
Q ss_pred EeCC---------CcEEEEeCCc-------------ceeEcCCCCEEEEEeCC-C--cEEEEeCCCC
Q 005646 505 SCAD---------SQVRILQGPN-------------VIGKYKDGKHIVSAGED-S--NVYMWNCIGH 546 (686)
Q Consensus 505 ~s~D---------~~I~iwd~~~-------------~~~~~~dg~~l~sgs~D-g--~V~iWd~~~~ 546 (686)
.+.. ..|.+.|..+ ...|+|||+.|+-.+.+ + .+.+.+++..
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 5543 3577777432 25688899887766543 2 3555666553
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.1e-05 Score=78.71 Aligned_cols=137 Identities=20% Similarity=0.329 Sum_probs=103.2
Q ss_pred eeeecCCCccceeeccc-eEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 207 ERVRLNEEDAMFCSKVQ-RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~-~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
.++..+++.++.|..|| .+-|++.+.... ..+...-+.|.+++.+++|++++.+.....|-+.|+.++...
T Consensus 365 ~r~~~~~e~~vigt~dgD~l~iyd~~~~e~--------kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 365 RRIQVDPEGDVIGTNDGDKLGIYDKDGGEV--------KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred EEEccCCcceEEeccCCceEEEEecCCceE--------EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence 34556777889999998 899998876542 234456788999999999999999988888888898887621
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
. .-+...+-|+...|||+
T Consensus 437 ~--------------------------------------------------------------idkS~~~lItdf~~~~n 454 (668)
T COG4946 437 L--------------------------------------------------------------IDKSEYGLITDFDWHPN 454 (668)
T ss_pred E--------------------------------------------------------------ecccccceeEEEEEcCC
Confidence 1 11234568999999999
Q ss_pred C-EEEEEECC----CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEE
Q 005646 366 N-YLLSASID----KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS 414 (686)
Q Consensus 366 ~-~L~s~s~D----g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs 414 (686)
+ ++|-+--+ ..|+++|+..++....-.....=.+-+|.| ++++|.--+
T Consensus 455 sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~-d~ryLYfLs 507 (668)
T COG4946 455 SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDP-DGRYLYFLS 507 (668)
T ss_pred ceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCC-CCcEEEEEe
Confidence 9 77765544 468999999998877766666666778888 888776554
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00017 Score=70.39 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=46.0
Q ss_pred cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 211 ~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
.+|+ +++.-.|..|.|...+..-.... .+.+.-+.-.-.-+-++||||+.+||.+...|+|+++|+....
T Consensus 7 ~~Gk-~lAi~qd~~iEiRsa~Ddf~si~--~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 7 SDGK-LLAILQDQCIEIRSAKDDFSSII--GKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred CCCc-EEEEEeccEEEEEeccCCchhee--EEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence 3444 44456678888887655322111 1122223333456789999999999999999999999986533
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=86.43 Aligned_cols=140 Identities=10% Similarity=0.201 Sum_probs=103.7
Q ss_pred CCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCC-----eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC
Q 005646 353 HSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND-----HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 353 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~-----~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~ 426 (686)
..++|.++.|...+ +++.|...|.|...|++++ .+...+-|...|+|++.-..++.+|++.+.+|+|.+||++-
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 56789999999866 9999999999999999865 57778889999999988776788999999999999999986
Q ss_pred CcE---E-EEeccCCcEE--EEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 427 CHV---V-DWVDIRQIVT--AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 427 ~~~---~-~~~~~~~~V~--~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
-++ + ...+|-..-. -+-+.+....+++++.|-..|||.++.+++....+. ........+..++|..
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf----~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF----PYSASEVDIPSVAFDS 402 (425)
T ss_pred hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC----CCccccccccceehhc
Confidence 655 3 4444432211 123345566788899999999999999887653322 1222333455566554
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00027 Score=71.05 Aligned_cols=226 Identities=15% Similarity=0.211 Sum_probs=133.7
Q ss_pred eeec-CCCccceeeccce-EEEEEcCCcccc-ccccccCceecccCCceEEEEEeeCCCEEEEEe-----CCCcEEEEEe
Q 005646 208 RVRL-NEEDAMFCSKVQR-VKVYHCKKRSKE-LSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-----DDGVVRLWQV 279 (686)
Q Consensus 208 ~~s~-~~~~l~~g~~d~~-v~vw~~~~~~~~-~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-----~Dg~I~vWd~ 279 (686)
..++ .+..++.+...|+ ..+||....... .......+.|.||- .||+||++|+|.= ..|.|-|||.
T Consensus 11 a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 11 AAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred eeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 3344 3345556666664 566777554321 22223455677774 7999999999863 3489999999
Q ss_pred e-cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 280 V-EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 280 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
. +-+.+.++......+.-+.+.++.. .++. -.+.
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~-------------tLvV------------------------------ANGG-- 119 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGE-------------TLVV------------------------------ANGG-- 119 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCC-------------EEEE------------------------------EcCC--
Confidence 8 5566666655444333222222110 0000 0011
Q ss_pred EEEeeCCC---EEEEEECCCcEEEEECCCCeeeeEee-----CCCCeEEEEEeecCCCEEEEEEcCCc-------EEEEe
Q 005646 359 DLSWSKNN---YLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGK-------VRIWA 423 (686)
Q Consensus 359 ~l~~s~~~---~L~s~s~Dg~V~iWd~~~~~~~~~~~-----h~~~V~~v~fsp~~~~~l~sgs~Dg~-------V~iwd 423 (686)
|.-+|+. .|=...++-.+.+-|..+++.+.... |...|..+++.+ ++..++..-..|. |-+++
T Consensus 120 -I~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~ 197 (305)
T PF07433_consen 120 -IETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHR 197 (305)
T ss_pred -CccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEc
Confidence 1112322 44455667778888888888876632 778899999998 7766555544332 33333
Q ss_pred cCCC-cEE-----EEeccCCcEEEEEEccCCCEEEEEec-CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 424 VLSC-HVV-----DWVDIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 424 ~~~~-~~~-----~~~~~~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
.... +.+ .+......+-+|+++++|..+++.+- .|.+.+||..++.+..... ...+.+++-.+
T Consensus 198 ~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----------l~D~cGva~~~ 267 (305)
T PF07433_consen 198 RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----------LPDACGVAPTD 267 (305)
T ss_pred CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----------cCceeeeeecC
Confidence 3221 111 13345678999999999998876655 6679999999988754322 23466666665
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.8e-05 Score=81.40 Aligned_cols=134 Identities=16% Similarity=0.282 Sum_probs=98.5
Q ss_pred eEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-----------CCcEEEEecC
Q 005646 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-----------DGKVRIWAVL 425 (686)
Q Consensus 358 ~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-----------Dg~V~iwd~~ 425 (686)
+-+.|||.| +|+|-..- -|.+|--.+-..++.|.|++ |.-+.|+| +.+||+|-+. ...++|||++
T Consensus 214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFYHPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEecc-ceeeecCccHHHHHhccCCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 568999999 88777655 48899877777888888875 78899999 9999999764 1579999999
Q ss_pred CCcEEEEecc---CCc-EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCe
Q 005646 426 SCHVVDWVDI---RQI-VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (686)
Q Consensus 426 ~~~~~~~~~~---~~~-V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~ 501 (686)
+|.+...+.. ... -.-+.||.|++++|.-.. ..|.||+...-.+.-...+ ....|..+.|+| .+..
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl--------ki~gIr~FswsP-~~~l 360 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL--------KISGIRDFSWSP-TSNL 360 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc--------CCccccCcccCC-Ccce
Confidence 9987754432 111 234689999999998765 6799999876443322222 234588899999 5565
Q ss_pred EEE
Q 005646 502 VMV 504 (686)
Q Consensus 502 l~~ 504 (686)
|+-
T Consensus 361 lAY 363 (698)
T KOG2314|consen 361 LAY 363 (698)
T ss_pred EEE
Confidence 554
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00071 Score=67.88 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=93.8
Q ss_pred CCCeeEEEeeCCC-EEEEEECC--------CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEE-EEEcCCcEEEEe
Q 005646 354 SGEILDLSWSKNN-YLLSASID--------KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDGKVRIWA 423 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L~s~s~D--------g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~-sgs~Dg~V~iwd 423 (686)
....+++++.++| +.++.... +.|..++.. ++.......-...+.|+|+| +++.|+ +-+..+.|..++
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~ 162 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFD 162 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEET-TSSEEEEEETTTTEEEEEE
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECC-cchheeecccccceeEEEe
Confidence 3467899999999 44544433 457777776 66555555667789999999 887665 566778899999
Q ss_pred cCCCc--EE---EEecc---CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEe
Q 005646 424 VLSCH--VV---DWVDI---RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (686)
Q Consensus 424 ~~~~~--~~---~~~~~---~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fs 495 (686)
+.... +. .+... ....-.+++..+|++.++....+.|.++|.. +++.....+ ....+++++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~--------p~~~~t~~~fg 233 (246)
T PF08450_consen 163 LDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL--------PVPRPTNCAFG 233 (246)
T ss_dssp EETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE---------SSSSEEEEEEE
T ss_pred ccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC--------CCCCEEEEEEE
Confidence 86322 21 12222 2247889999999988888889999999987 554432221 12368999996
Q ss_pred CCCCCeEEEEe
Q 005646 496 PQDSSKVMVSC 506 (686)
Q Consensus 496 p~~~~~l~~~s 506 (686)
..+.+.|++++
T Consensus 234 g~~~~~L~vTt 244 (246)
T PF08450_consen 234 GPDGKTLYVTT 244 (246)
T ss_dssp STTSSEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 43555555544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.1e-06 Score=58.85 Aligned_cols=37 Identities=41% Similarity=0.809 Sum_probs=34.8
Q ss_pred CCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEE
Q 005646 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWR 381 (686)
Q Consensus 345 ~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd 381 (686)
++++.+.+|.+.|.+|+|+|++ +|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4678899999999999999998 999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-05 Score=87.85 Aligned_cols=182 Identities=15% Similarity=0.202 Sum_probs=136.1
Q ss_pred cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeecc
Q 005646 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 211 ~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
.+++.++.|+-...+..+|..+... .+...-..+.|+-|+. ++++|.+|...|+|.+-|..+.+
T Consensus 145 ~~~~~~i~Gg~Q~~li~~Dl~~~~e-------~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~------- 208 (1118)
T KOG1275|consen 145 MGPSTLIMGGLQEKLIHIDLNTEKE-------TRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE------- 208 (1118)
T ss_pred cCCcceeecchhhheeeeeccccee-------eeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCc-------
Confidence 3566777787777788887665432 1112112333555554 68899999999999999987754
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEE
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLS 370 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s 370 (686)
.++++.+|++.|.++.... +.|++
T Consensus 209 -------------------------------------------------------~iht~~aHs~siSDfDv~G-NlLit 232 (1118)
T KOG1275|consen 209 -------------------------------------------------------TIHTFDAHSGSISDFDVQG-NLLIT 232 (1118)
T ss_pred -------------------------------------------------------eeeeeeccccceeeeeccC-CeEEE
Confidence 5778889999999987642 37888
Q ss_pred EEC---------CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEe---cCCCc--EEEEeccC
Q 005646 371 ASI---------DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA---VLSCH--VVDWVDIR 436 (686)
Q Consensus 371 ~s~---------Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd---~~~~~--~~~~~~~~ 436 (686)
++. |..|+|||++..+.+.-++......-+.|+|.-...++.++..|...+-| +.+.. +.......
T Consensus 233 CG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~ 312 (1118)
T KOG1275|consen 233 CGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNG 312 (1118)
T ss_pred eecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCC
Confidence 764 66799999999988887774333477889997678899999999999999 43332 22333345
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEe
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYN 464 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd 464 (686)
..+.+++++++|+.++.|..+|.|.+|-
T Consensus 313 s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 313 SGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CcceeEEecCCCceEEEecccCcEeeec
Confidence 5699999999999999999999999997
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00022 Score=76.23 Aligned_cols=112 Identities=19% Similarity=0.376 Sum_probs=84.1
Q ss_pred CeeEEEeeCCC--EEEEE----ECCCc----EEEEECCCCee--e--eEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEE
Q 005646 356 EILDLSWSKNN--YLLSA----SIDKT----VRLWRVGNDHC--L--RVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRI 421 (686)
Q Consensus 356 ~V~~l~~s~~~--~L~s~----s~Dg~----V~iWd~~~~~~--~--~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~i 421 (686)
...++.|+... .+.+. +.+|. -.+|++...+. + ..+..+..|.|++++| +...|+.|+.||.|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEE
Confidence 44667776543 44433 33443 34677665532 2 2344889999999999 9999999999999999
Q ss_pred EecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe
Q 005646 422 WAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 422 wd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
||...+... .....-.++.++|+|+|..+++|+..|.+.+||+.-+.
T Consensus 286 yD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 286 YDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 999877443 34556678999999999999999999999999986443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00025 Score=76.64 Aligned_cols=170 Identities=11% Similarity=0.052 Sum_probs=103.3
Q ss_pred CCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEE--EEeec-CCCEEEEEEcCCcEEEEecCCCcEEEEeccCCc---
Q 005646 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCV--HFNPV-DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI--- 438 (686)
Q Consensus 365 ~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v--~fsp~-~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~--- 438 (686)
++.++.+..++.|.-+|..+|+.+..+....+...+ .-+|. .+..++.++.+|.+..+|..+++.+-......+
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~ 239 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA 239 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCc
Confidence 456777788899999999999998887633221100 01110 234577778899999999999886532221110
Q ss_pred -----EEEEEEcc--CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 439 -----VTAVCYRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 439 -----V~~v~~sp--dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
...+..+| .+..+++++.+|.+..+|..+++....... .....+.. .+..+++++.++.+
T Consensus 240 ~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----------~~~~~~~~---~~~~vy~~~~~g~l 306 (394)
T PRK11138 240 TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY----------GSVNDFAV---DGGRIYLVDQNDRV 306 (394)
T ss_pred cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC----------CCccCcEE---ECCEEEEEcCCCeE
Confidence 11112233 345677778899999999998876543221 00111122 23566666777777
Q ss_pred EEEeCCcce-eE-----------cC--CCCEEEEEeCCCcEEEEeCCCCC
Q 005646 512 RILQGPNVI-GK-----------YK--DGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 512 ~iwd~~~~~-~~-----------~~--dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..+|..+.. .| .| .+.+|+.++.||.|++.|..+++
T Consensus 307 ~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 307 YALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred EEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCC
Confidence 777765431 11 11 35567778888888888887765
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00051 Score=78.80 Aligned_cols=307 Identities=11% Similarity=0.095 Sum_probs=176.4
Q ss_pred cCcceeee--cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEee
Q 005646 203 QGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (686)
Q Consensus 203 ~~~~~~~s--~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~ 280 (686)
+.++.++. .+++.++.+...|.|.+-+......+.. ..-.+.|.+++||||++.++-...++++.+-. .
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--------g~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~ 138 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--------GNVDNGISAASWSPDEELLALITGRQTLLFMT-K 138 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeee--------eeccCceEEEeecCCCcEEEEEeCCcEEEEEe-c
Confidence 34565554 4567788889999998886554333222 12356899999999999999888877776533 3
Q ss_pred cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
+-..+.+...... ....+....+.|+......- ++.. .... +--...++......-| ..=..+
T Consensus 139 ~f~~i~E~~L~~d--------~~~~sk~v~VGwGrkeTqfr----gs~g-r~~~---~~~~~~ek~~~~~~~~-~~~~~I 201 (1265)
T KOG1920|consen 139 DFEPIAEKPLDAD--------DERKSKFVNVGWGRKETQFR----GSEG-RQAA---RQKIEKEKALEQIEQD-DHKTSI 201 (1265)
T ss_pred cccchhccccccc--------cccccccceecccccceeee----cchh-hhcc---cccccccccccchhhc-cCCceE
Confidence 3333322222100 00001111111111110000 0000 0000 0000000100101112 122468
Q ss_pred EeeCCC-EEEEEE----CC-CcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEE---cCCcEEEEecCCC---
Q 005646 361 SWSKNN-YLLSAS----ID-KTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS---IDGKVRIWAVLSC--- 427 (686)
Q Consensus 361 ~~s~~~-~L~s~s----~D-g~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs---~Dg~V~iwd~~~~--- 427 (686)
.|-.|| ++++.. .+ +.|++||-+ +..-.+-. ..+.=.+++|-| .|..+++-. .|+.|.+|.-+.-
T Consensus 202 sWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 202 SWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred EEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCcccc
Confidence 999999 666532 34 899999987 43222211 344557899999 888888864 3567888875432
Q ss_pred cEEEEeccC-CcEEEEEEccCCCEEEE---EecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 428 HVVDWVDIR-QIVTAVCYRPDGQGGIV---GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 428 ~~~~~~~~~-~~V~~v~~spdg~~l~~---gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
....-.... ..+..++|+.++..|++ ......|++|-+.+.+.-++..+..... .-+.|+|.....+.
T Consensus 280 ~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~--------~~~~W~p~~~~~L~ 351 (1265)
T KOG1920|consen 280 EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK--------ALLMWDPVTEKTLH 351 (1265)
T ss_pred ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc--------ccccccCCCceeEE
Confidence 222112222 33899999999999988 4445559999999888776665544431 22899997777888
Q ss_pred EEeCCCcEEEEeCCcceeEcCC--CCEEEEEeCCCcEEEEeCCCCC
Q 005646 504 VSCADSQVRILQGPNVIGKYKD--GKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 504 ~~s~D~~I~iwd~~~~~~~~~d--g~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+-..+|...++|..-...++|+ +...+..+ ..+.+.++.-..
T Consensus 352 v~~~sG~~~v~~~~~~t~~s~~d~S~~~VIDg--s~llvT~ls~~v 395 (1265)
T KOG1920|consen 352 VLRESGQRLVRDFAWTTDRSPNDGSTVYVIDG--SRLLVTPLSLAV 395 (1265)
T ss_pred EEecCCcEEEEEEEEeeeccCCCCceEEEEeC--CEEEEecchhhc
Confidence 8888999999888777777553 44444432 357777765543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00085 Score=72.47 Aligned_cols=252 Identities=10% Similarity=0.042 Sum_probs=144.1
Q ss_pred CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccC
Q 005646 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 212 ~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
.++.++.++.++.+..+|........... +. +.+.+--.- .+..++.+..++.|..+|..+|+.+-.....
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~-----~~---~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTK-----VA---GEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCccccc-----CC---CceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCC
Confidence 45667778888888888876544322211 11 112111111 1346667778899999999999865544321
Q ss_pred CCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEE
Q 005646 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSA 371 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~ 371 (686)
. +...+.+...++. . ++.++.+
T Consensus 190 ~-----------------------------------------------------~~~~~~~~~sP~v----~-~~~v~~~ 211 (394)
T PRK11138 190 V-----------------------------------------------------PSLTLRGESAPAT----A-FGGAIVG 211 (394)
T ss_pred C-----------------------------------------------------CcccccCCCCCEE----E-CCEEEEE
Confidence 0 0000111112221 1 2456667
Q ss_pred ECCCcEEEEECCCCeeeeEeeCCCC--------eEEEEEee-cCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEE
Q 005646 372 SIDKTVRLWRVGNDHCLRVFPHSNY--------VTCVHFNP-VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAV 442 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~h~~~--------V~~v~fsp-~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v 442 (686)
+.++.+...|..+++.+..+....+ ...+.-+| ..++.++.++.+|.+..+|+.+++.+-...... ...+
T Consensus 212 ~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~ 290 (394)
T PRK11138 212 GDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-VNDF 290 (394)
T ss_pred cCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-ccCc
Confidence 7788888888888887665541110 11111122 134567778889999999999998763333222 1112
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCccee-
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG- 521 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~- 521 (686)
. .++..+++++.+|.+..+|..+++........ .. ....+.... +..|++++.||.|..+|..+...
T Consensus 291 ~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~~------~~~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 291 A--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-LH------RLLTAPVLY---NGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred E--EECCEEEEEcCCCeEEEEECCCCcEEEccccc-CC------CcccCCEEE---CCEEEEEeCCCEEEEEECCCCCEE
Confidence 2 24667888889999999999988764422110 00 111112222 35777888888888888654311
Q ss_pred -----------EcC--CCCEEEEEeCCCcEEEEeC
Q 005646 522 -----------KYK--DGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 522 -----------~~~--dg~~l~sgs~Dg~V~iWd~ 543 (686)
-.| .+..|+.++.||.|+.+++
T Consensus 359 ~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 359 AQQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 111 3457778888998888764
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.6e-06 Score=94.81 Aligned_cols=201 Identities=16% Similarity=0.234 Sum_probs=131.9
Q ss_pred ccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccc
Q 005646 237 LSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKE 316 (686)
Q Consensus 237 ~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (686)
+++......|+.|...-+|++|+-+.++|+.|+..|.|+++++.+|......+.+......+.-+.+....++...++..
T Consensus 1088 FSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred HhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence 44455556788899999999999999999999999999999999998777766665544433322222222221111110
Q ss_pred cceeEEEeeccCCceEEEeCCcccccc--CCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEe-e
Q 005646 317 KISILKSLRRTSESACVVFPPKVFRIL--EKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-P 392 (686)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~-~ 392 (686)
.. ..|+.. ..+.|.|. .-.++.|+..- .-+.|..-..+.|||+.++..+.++ .
T Consensus 1168 --------------ls-----aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1168 --------------LS-----ALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred --------------hH-----HHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC
Confidence 00 111111 13444444 33578888765 3344455567899999999877763 2
Q ss_pred ----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCC
Q 005646 393 ----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 393 ----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~ 468 (686)
.+..=++..|+| ++.+++- ||. +||++..+.+..++.-..-..-.|+|.|..++..+ .|||+++-
T Consensus 1225 ~~~~~~y~~n~a~FsP-~D~LIln---dGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF 1293 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSP-CDTLILN---DGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTF 1293 (1516)
T ss_pred cchhhhhhccccccCC-CcceEee---Cce--eeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHH
Confidence 222337899999 7777653 664 79999887765444333334457999999999865 58999887
Q ss_pred eee
Q 005646 469 HLE 471 (686)
Q Consensus 469 ~~~ 471 (686)
++.
T Consensus 1294 ~lL 1296 (1516)
T KOG1832|consen 1294 KLL 1296 (1516)
T ss_pred HHH
Confidence 653
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.9e-05 Score=80.71 Aligned_cols=188 Identities=14% Similarity=0.151 Sum_probs=140.7
Q ss_pred cCCCCeeEEEeeCCCEEEEEECCCcEEEEECCC--C-eeeeEee-CCCCeEEEEEeecCCCEEEEEEc-CCcEEEEecCC
Q 005646 352 GHSGEILDLSWSKNNYLLSASIDKTVRLWRVGN--D-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLS 426 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~--~-~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~~~ 426 (686)
-|.+.|+.+......++++++.||.++.|.-.. + ..+..+. |...|.+++.+- ++.++.|.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeec
Confidence 388889988877777999999999999997543 2 2233333 888899999888 9999999887 99999999998
Q ss_pred CcEEEEeccCCcEEEEEEcc-CC---CEEEEE-ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCe
Q 005646 427 CHVVDWVDIRQIVTAVCYRP-DG---QGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (686)
Q Consensus 427 ~~~~~~~~~~~~V~~v~~sp-dg---~~l~~g-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~ 501 (686)
-..+..+......-.++|.- .| ..++++ -.+|.+.|+|-....++. ....+-|..+|..+.+.| -+..
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~------~~fkklH~sPV~~i~y~q-a~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD------GYFKKLHFSPVKKIRYNQ-AGDS 158 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc------ceecccccCceEEEEeec-cccc
Confidence 77664444433333333322 22 134443 457899999976554332 112456788999999999 7778
Q ss_pred EEEEeCCCcEEEEeCC------------------------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 502 VMVSCADSQVRILQGP------------------------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 502 l~~~s~D~~I~iwd~~------------------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+++....|.|.-|.+. +.+.++|+|..+.+-+.|..|+++.+.+++
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 8888888999999753 236788999999999999999999999987
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00014 Score=79.55 Aligned_cols=154 Identities=14% Similarity=0.013 Sum_probs=102.7
Q ss_pred eeCCC-EE-EEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEE-------------------------
Q 005646 362 WSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS------------------------- 414 (686)
Q Consensus 362 ~s~~~-~L-~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs------------------------- 414 (686)
+.|+| .+ .+.-..+.+.+.|..+.+....+.-.+...-++++| ++.++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 34566 33 233345677888888877776666444556667777 666666554
Q ss_pred ---------------cCCcEEEEecCC-----CcEEEEeccCCcEEEEEEccCCCEEEEEec-CCcEEEEeCCCCeeeee
Q 005646 415 ---------------IDGKVRIWAVLS-----CHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELD 473 (686)
Q Consensus 415 ---------------~Dg~V~iwd~~~-----~~~~~~~~~~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~~~~~~ 473 (686)
.+++|.+.|.++ ..++..+........+.++|||+++++++. +++|.|+|+.+.+..+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 235688888887 466777778888899999999999887665 89999999987553221
Q ss_pred eeEE----eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 474 AEIC----VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 474 ~~~~----~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
..+. +..... -.......+|.+ ++..+.+-..|++|..|++..
T Consensus 359 ~~~~~~~~vvaeve-vGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 359 GKIKPRDAVVAEPE-LGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCccceEEEeec-cCCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 1110 111000 123345677877 677888888999999999654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.7e-05 Score=83.33 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=85.0
Q ss_pred eCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeec----CCCEEEEEEcCCcEEEEecC---CCcEEEEec
Q 005646 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPV----DDNYFISGSIDGKVRIWAVL---SCHVVDWVD 434 (686)
Q Consensus 363 s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~----~~~~l~sgs~Dg~V~iwd~~---~~~~~~~~~ 434 (686)
.-+| +++|||.||+|.|--+.+.+...++....++.+|+++|. ..+.|++|+.-| +.++.-+ ....+....
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~ 158 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE 158 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence 4456 999999999999999999998888888899999999992 257899999988 8777543 223334556
Q ss_pred cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeee
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~ 472 (686)
..++|.+++|. |+++|-++.+| |+|||+...+...
T Consensus 159 ~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~ 193 (846)
T KOG2066|consen 159 GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLT 193 (846)
T ss_pred CccceEEEEec--CcEEEEecCCC-cEEEeccccceee
Confidence 78899999995 66888886665 8999998876544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.1e-05 Score=81.53 Aligned_cols=175 Identities=14% Similarity=0.248 Sum_probs=123.9
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
.+....+..++.|+..|.|.+.+...... ....|... ..+|.|++||+.||+|.|-.+-+.+...
T Consensus 43 s~~av~~~~~~~GtH~g~v~~~~~~~~~~---------~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 43 SCCAVHDKFFALGTHRGAVYLTTCQGNPK---------TNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred HHHHhhcceeeeccccceEEEEecCCccc---------cccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 34456778999999999999998654321 11224433 5579999999999999999887766433
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC-
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN- 365 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~- 365 (686)
.+. -..++..++++|+
T Consensus 108 ~~d---------------------------------------------------------------f~rpiksial~Pd~ 124 (846)
T KOG2066|consen 108 QYD---------------------------------------------------------------FKRPIKSIALHPDF 124 (846)
T ss_pred eEe---------------------------------------------------------------cCCcceeEEeccch
Confidence 322 2357788888887
Q ss_pred -----CEEEEEECCCcEEEEECC---CCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCC
Q 005646 366 -----NYLLSASIDKTVRLWRVG---NDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ 437 (686)
Q Consensus 366 -----~~L~s~s~Dg~V~iWd~~---~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~ 437 (686)
+++++|+.-| +.++.-+ ....+..-...++|.++.| .++++|-++.+| |++||+.+++.+.......
T Consensus 125 ~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~ 199 (846)
T KOG2066|consen 125 SRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPS 199 (846)
T ss_pred hhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccccceeeccCCCC
Confidence 2899999988 7777533 2222212226799999999 578999888776 8999999998876554322
Q ss_pred -------cEEEEEEccCCCEEEEEecCCcEEEEeCC
Q 005646 438 -------IVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 438 -------~V~~v~~spdg~~l~~gs~dg~i~iwd~~ 466 (686)
-...+.|.++.+ |+.| ...+|+|..++
T Consensus 200 ~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 200 QSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred CCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 245678877654 4444 66789999887
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0013 Score=65.38 Aligned_cols=184 Identities=15% Similarity=0.110 Sum_probs=117.2
Q ss_pred eCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCcc
Q 005646 260 PDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKV 339 (686)
Q Consensus 260 pdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (686)
+++.++++++.++.|..||..+|+.+........
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~---------------------------------------------- 67 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP---------------------------------------------- 67 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECSSC----------------------------------------------
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc----------------------------------------------
Confidence 3566788888999999999999986655543110
Q ss_pred ccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEe-eCC----CCeEEEEEeecCCCEEEEEE
Q 005646 340 FRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF-PHS----NYVTCVHFNPVDDNYFISGS 414 (686)
Q Consensus 340 ~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~-~h~----~~V~~v~fsp~~~~~l~sgs 414 (686)
.... ....++.++.++.++.|..+|..+++.+... ... .......... .++.++.+.
T Consensus 68 -------------~~~~----~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 129 (238)
T PF13360_consen 68 -------------ISGA----PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGT 129 (238)
T ss_dssp -------------GGSG----EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEE
T ss_pred -------------ccce----eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEe
Confidence 0000 1233456677778889999999999999884 311 1223334444 578889999
Q ss_pred cCCcEEEEecCCCcEEEEeccCC-c----------EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecccc
Q 005646 415 IDGKVRIWAVLSCHVVDWVDIRQ-I----------VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (686)
Q Consensus 415 ~Dg~V~iwd~~~~~~~~~~~~~~-~----------V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 483 (686)
.++.|..+|+.+++.+-...... . +..-....++ .+++++.+|.+.-+|+.+++... +...
T Consensus 130 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w--~~~~----- 201 (238)
T PF13360_consen 130 SSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW--SKPI----- 201 (238)
T ss_dssp TCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE--EECS-----
T ss_pred ccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE--EecC-----
Confidence 89999999999999874443322 1 1122222344 77777788864444999988442 1111
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcce
Q 005646 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI 520 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~ 520 (686)
..+..+ ... .+..|++++.++.|..||..+..
T Consensus 202 ---~~~~~~-~~~-~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 202 ---SGIYSL-PSV-DGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ---S-ECEC-EEC-CCTEEEEEETTTEEEEEETTTTE
T ss_pred ---CCccCC-cee-eCCEEEEEeCCCEEEEEECCCCC
Confidence 112221 234 55777777799999999988643
|
... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.4e-05 Score=83.19 Aligned_cols=141 Identities=15% Similarity=0.208 Sum_probs=106.1
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEc---------CCcEEEEecCCCcEEEEeccC
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSI---------DGKVRIWAVLSCHVVDWVDIR 436 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~---------Dg~V~iwd~~~~~~~~~~~~~ 436 (686)
.|.+|...|+|.+-|..+.+.++++. |.+.|..+.. .|+.|++++. |.-|++||++..+.+.-+...
T Consensus 189 ~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~ 265 (1118)
T KOG1275|consen 189 NLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP 265 (1118)
T ss_pred EEEeecccceEEeecCCcCceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc
Confidence 89999999999999999999999998 9999988876 6899999985 567899999998877666655
Q ss_pred CcEEEEEEccC-CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 437 QIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 437 ~~V~~v~~spd-g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
....-+.|+|. ...+++.+..|.+.+-|..+-.-....... ...-...+.++.+++
T Consensus 266 ~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~----v~p~~s~i~~fDiSs------------------- 322 (1118)
T KOG1275|consen 266 YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKM----VNPNGSGISAFDISS------------------- 322 (1118)
T ss_pred cCchhhhhcccccceEEEEecccceeeccccccCCCccceeE----EccCCCcceeEEecC-------------------
Confidence 55567888884 457888899999999994321111000000 011123377888887
Q ss_pred CCcceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 516 GPNVIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 516 ~~~~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
+|+.|+-|..+|.|.+|.
T Consensus 323 ---------n~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 323 ---------NGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ---------CCceEEEecccCcEeeec
Confidence 788888888888888887
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00025 Score=71.86 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=73.1
Q ss_pred CeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 346 PLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
+..-+.+|...|.+|+|+|.. +|..++.+.+|+|.|+++..++..+.-...+++++|.-.+.++++.|-..|.|.|||
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEE
Confidence 344566889999999999976 788999999999999999999999986699999999987788999999999999999
Q ss_pred cCCC
Q 005646 424 VLSC 427 (686)
Q Consensus 424 ~~~~ 427 (686)
++..
T Consensus 265 ~R~~ 268 (463)
T KOG1645|consen 265 MRQP 268 (463)
T ss_pred ccCC
Confidence 9864
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0032 Score=63.42 Aligned_cols=143 Identities=14% Similarity=0.164 Sum_probs=98.9
Q ss_pred EEEEEee-CCCEEEEEeCCC-cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCce
Q 005646 254 LTMKFSP-DGQYLASAGDDG-VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (686)
Q Consensus 254 ~~l~fsp-dg~~Lasgs~Dg-~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (686)
..++.+| .+..++.+-.-| ...+||..+++....+..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a----------------------------------------- 46 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA----------------------------------------- 46 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-----------------------------------------
Confidence 4567777 455666665554 467899988886554432
Q ss_pred EEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC-----CCcEEEEECC-CCeeeeEee-CCCCeEEEEEe
Q 005646 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-----DKTVRLWRVG-NDHCLRVFP-HSNYVTCVHFN 403 (686)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~-----Dg~V~iWd~~-~~~~~~~~~-h~~~V~~v~fs 403 (686)
.+-+.|.|| -.||++| +|++.=. .|.|-|||.. +-+.+..|. |.-.-..+.+.
T Consensus 47 -------------~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~ 107 (305)
T PF07433_consen 47 -------------PPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM 107 (305)
T ss_pred -------------CCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc
Confidence 234567777 4689999 7776543 4789999999 667777777 66667778899
Q ss_pred ecCCCEEEEEE------------------cCCcEEEEecCCCcEEEEe-----ccCCcEEEEEEccCCCEEEEEecC
Q 005646 404 PVDDNYFISGS------------------IDGKVRIWAVLSCHVVDWV-----DIRQIVTAVCYRPDGQGGIVGSMM 457 (686)
Q Consensus 404 p~~~~~l~sgs------------------~Dg~V~iwd~~~~~~~~~~-----~~~~~V~~v~~spdg~~l~~gs~d 457 (686)
| ++..|+.+. .+-.|.+.|..+++++... .++-.|..+++.++|..++..-..
T Consensus 108 p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~q 183 (305)
T PF07433_consen 108 P-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQ 183 (305)
T ss_pred C-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecC
Confidence 9 887777763 2345666677888877542 255679999999998766554333
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0028 Score=70.42 Aligned_cols=187 Identities=12% Similarity=0.126 Sum_probs=116.1
Q ss_pred EEeccCCCC-eeEEEeeCCC-EEEEEECCC-----cEEEEECCC------Ceee---eEee-----CCCCeEEEEEeecC
Q 005646 348 HEFHGHSGE-ILDLSWSKNN-YLLSASIDK-----TVRLWRVGN------DHCL---RVFP-----HSNYVTCVHFNPVD 406 (686)
Q Consensus 348 ~~l~~h~~~-V~~l~~s~~~-~L~s~s~Dg-----~V~iWd~~~------~~~~---~~~~-----h~~~V~~v~fsp~~ 406 (686)
+.++++... |..+....+. +|++.+.|+ .|+||+++. .+|+ +.+. ...++.+++.+. +
T Consensus 58 ~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~ 136 (933)
T KOG2114|consen 58 RGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-D 136 (933)
T ss_pred ehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-c
Confidence 455556666 4444333333 888887765 489999863 2455 3333 346788999998 8
Q ss_pred CCEEEEEEcCCcEEEEecC---C--CcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 407 DNYFISGSIDGKVRIWAVL---S--CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 407 ~~~l~sgs~Dg~V~iwd~~---~--~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
-+.+++|-.+|.|..+.-. . .+.......+++||.+++..+++.++.......|.+|.+.+.. ... . .
T Consensus 137 l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~---~---~ 209 (933)
T KOG2114|consen 137 LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSL---K---V 209 (933)
T ss_pred ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-cce---e---e
Confidence 8999999999999998432 1 1223344567899999999999984444456789999998544 111 1 1
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---ceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---VIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
...++..+.|-.|++... =+.++.+.-+.+|+... +.+|--.++..+....-|.+.+.-.+
T Consensus 210 ld~~G~~lnCss~~~~t~--qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~~ 273 (933)
T KOG2114|consen 210 LDNNGISLNCSSFSDGTY--QFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGLLLCVTTD 273 (933)
T ss_pred eccCCccceeeecCCCCc--cEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEecCEEEEEEcc
Confidence 234567788888887322 23334455677777653 23333355555555443444444333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0009 Score=72.29 Aligned_cols=171 Identities=16% Similarity=0.205 Sum_probs=89.2
Q ss_pred CCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec
Q 005646 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~ 434 (686)
+.-....|.+.+.+|+-....+|.|+.--.....+.+.....+..|-. |.+|+..+. +.|.+||+.+++++..+.
T Consensus 69 G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~~~i~~i~ 143 (443)
T PF04053_consen 69 GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKSS-DFICFYDWETGKLIRRID 143 (443)
T ss_dssp EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EEEEES
T ss_pred CceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEECC-CCEEEEEhhHcceeeEEe
Confidence 344678899977888888889999974333333334544444555543 666666654 489999999999998888
Q ss_pred cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCC------------eeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN------------HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l 502 (686)
... |..|.|+++|++++..+. ..+.|++.... ......++ ..+|.+..|.. + .+
T Consensus 144 v~~-vk~V~Ws~~g~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~---------~~~IkSg~W~~-d--~f 209 (443)
T PF04053_consen 144 VSA-VKYVIWSDDGELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEI---------SERIKSGCWVE-D--CF 209 (443)
T ss_dssp S-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----------S--SEEEEET-T--EE
T ss_pred cCC-CcEEEEECCCCEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEe---------cceeEEEEEEc-C--EE
Confidence 765 899999999999999865 47888776543 22211111 14577888876 2 33
Q ss_pred EEEeCCCcEEEEe-CCc-----------ceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 503 MVSCADSQVRILQ-GPN-----------VIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 503 ~~~s~D~~I~iwd-~~~-----------~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+-+... +|+-+= +.. .+...+..+.|.....|+.|..+.++.
T Consensus 210 iYtT~~-~lkYl~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 210 IYTTSN-HLKYLVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEE-TT-EEEEEETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEEcCC-eEEEEEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 333333 444332 111 123334445666666666666666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.011 Score=63.02 Aligned_cols=239 Identities=15% Similarity=0.207 Sum_probs=124.0
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee-eeccCCCCCcceEEee-cCCCCceeeeeccccceeEEEeeccCC
Q 005646 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT-EVDIPEIDPSCIYFTV-NHLSELKPLFMDKEKISILKSLRRTSE 329 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (686)
.|+.|.|.++..-||.|-..|.|.||.+...+... .......+.....+.. +....+..+.-... . .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~----------~-~ 71 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAP----------P-S 71 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG------------T-T
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCC----------c-c
Confidence 58999999998889999999999999987765322 0000000000000000 00000000000000 0 0
Q ss_pred ceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee---------CCCCeEEE
Q 005646 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP---------HSNYVTCV 400 (686)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~---------h~~~V~~v 400 (686)
.+-.-.|...++...++|++++.|.-|+++.|..+|.+.|.|++....+..-. ....|+++
T Consensus 72 ----------~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~i 141 (395)
T PF08596_consen 72 ----------LKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSI 141 (395)
T ss_dssp -----------SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEE
T ss_pred ----------cccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEE
Confidence 00000355566667899999999988899999999999999998887776532 34579999
Q ss_pred EEeec----CC---CEEEEEEcCCcEEEEecCC---Cc-E---EEEe-ccCCcEEEEE-EccC-C---------------
Q 005646 401 HFNPV----DD---NYFISGSIDGKVRIWAVLS---CH-V---VDWV-DIRQIVTAVC-YRPD-G--------------- 448 (686)
Q Consensus 401 ~fsp~----~~---~~l~sgs~Dg~V~iwd~~~---~~-~---~~~~-~~~~~V~~v~-~spd-g--------------- 448 (686)
.|.-. |+ -.+++|...|.+.+|.+.- +. . .... .+..+|..+. ++.+ |
T Consensus 142 eF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 142 EFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGG
T ss_pred EEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhcccc
Confidence 99741 22 4788999999999998751 11 1 1222 4455655554 3221 1
Q ss_pred ----CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEe----CCCCCeEEEEeCCCcEEEEeCCcc
Q 005646 449 ----QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL----PQDSSKVMVSCADSQVRILQGPNV 519 (686)
Q Consensus 449 ----~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fs----p~~~~~l~~~s~D~~I~iwd~~~~ 519 (686)
..+++...+..++++...+.+...+. . .......++.+- ...+..|++-..+|.|+++.++..
T Consensus 222 g~~i~g~vVvvSe~~irv~~~~~~k~~~K~-------~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 222 GISIPGYVVVVSESDIRVFKPPKSKGAHKS-------F-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp T----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred CCCcCcEEEEEcccceEEEeCCCCccccee-------e-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence 23455556788999998876643211 1 011112233442 124567788889999999987753
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.7e-06 Score=86.66 Aligned_cols=239 Identities=15% Similarity=0.256 Sum_probs=142.9
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEe----CCCcEEEEEeecCeeeeee
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAG----DDGVVRLWQVVEDERLTEV 288 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs----~Dg~I~vWd~~~~~~~~~~ 288 (686)
..++.|..+|.|.+-..+.....- .....+|....++++|++ |.+.||.|- .|..+.|||+.++-.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs-----~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~lt---- 141 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSS-----AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLT---- 141 (783)
T ss_pred hhhhhccccCceEEeecCCccccc-----ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccC----
Confidence 367889999999998876544321 123456889999999998 667777762 356799999977531
Q ss_pred ccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEec-cCCCCeeEEEeeCCC-
Q 005646 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH-GHSGEILDLSWSKNN- 366 (686)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~- 366 (686)
.+. .-..|. +.......++|-.+.
T Consensus 142 -vPk-----------------------------------------------------e~~~fs~~~l~gqns~cwlrd~k 167 (783)
T KOG1008|consen 142 -VPK-----------------------------------------------------ESPLFSSSTLDGQNSVCWLRDTK 167 (783)
T ss_pred -CCc-----------------------------------------------------cccccccccccCccccccccCcc
Confidence 000 000011 122344578888666
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEe-cCCCc-EEEE-----eccCCcE
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA-VLSCH-VVDW-----VDIRQIV 439 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd-~~~~~-~~~~-----~~~~~~V 439 (686)
++++|...+.++++|++........-.+..|..+...|-.++|+++-. ||.|.+|| .++-+ .+.. ......+
T Consensus 168 lvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l 246 (783)
T KOG1008|consen 168 LVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQL 246 (783)
T ss_pred hhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccce
Confidence 777888888999999974322222224556777888887788888766 99999999 33322 1111 1223358
Q ss_pred EEEEEccC--CCEEEEEecCCcEEEEeCCCCeeee--ee--eEEeec----cccCCCCCeEEEEEeCCC-CCeEEEEeCC
Q 005646 440 TAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLEL--DA--EICVHS----KKKAPCKRITGFQFLPQD-SSKVMVSCAD 508 (686)
Q Consensus 440 ~~v~~spd--g~~l~~gs~dg~i~iwd~~~~~~~~--~~--~~~~~~----~~~~~~~~I~~l~fsp~~-~~~l~~~s~D 508 (686)
..++|.|. |...+..-..++|++||+....-.. .. .+.... ........|..+.|++.. -...+++...
T Consensus 247 ~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~n 326 (783)
T KOG1008|consen 247 FALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVIN 326 (783)
T ss_pred eeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeecc
Confidence 99999994 4344444456889999985321100 00 000111 112224567788888754 2344444444
Q ss_pred CcEEEEeC
Q 005646 509 SQVRILQG 516 (686)
Q Consensus 509 ~~I~iwd~ 516 (686)
-++.-+++
T Consensus 327 l~~~Df~V 334 (783)
T KOG1008|consen 327 LQPKDFSV 334 (783)
T ss_pred CChhhccc
Confidence 44444443
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00048 Score=69.88 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=37.5
Q ss_pred CceecccCCceEEEEEeeCCC-EEEEEeCCCcEEEEEeecCeeeeee
Q 005646 243 GQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEV 288 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~vWd~~~~~~~~~~ 288 (686)
.+-+.+|...|..|+|||..+ +|..++.+.+|+|.|+.+......+
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy 232 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY 232 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe
Confidence 345678889999999999776 7888999999999999887644433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0039 Score=71.85 Aligned_cols=199 Identities=16% Similarity=0.181 Sum_probs=126.2
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
....|.++.|..+++-|+.+..+|.|.+-|..+...
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-------------------------------------------- 102 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL-------------------------------------------- 102 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccce--------------------------------------------
Confidence 446899999999999999999999999987766441
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEEC----CCCeee---------------
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRV----GNDHCL--------------- 388 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~----~~~~~~--------------- 388 (686)
.....-...|.+++|+||. .++..+..+++.+-.- -..+.+
T Consensus 103 -------------------eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGw 163 (1265)
T KOG1920|consen 103 -------------------EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGW 163 (1265)
T ss_pred -------------------eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecc
Confidence 1111234678899999988 7777777677655432 111111
Q ss_pred ----eEee-------------C---------CCCeEEEEEeecCCCEEEEEE----cC-CcEEEEecCCCcEEEEe-ccC
Q 005646 389 ----RVFP-------------H---------SNYVTCVHFNPVDDNYFISGS----ID-GKVRIWAVLSCHVVDWV-DIR 436 (686)
Q Consensus 389 ----~~~~-------------h---------~~~V~~v~fsp~~~~~l~sgs----~D-g~V~iwd~~~~~~~~~~-~~~ 436 (686)
..|. + .+.=++|.|-- |+.+|++.. .+ .+|++||-. +.+-... ...
T Consensus 164 GrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~ 241 (1265)
T KOG1920|consen 164 GRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVE 241 (1265)
T ss_pred cccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCccc
Confidence 0010 0 11224588876 888998843 23 789999987 4433221 223
Q ss_pred CcEEEEEEccCCCEEEEE---ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE---EeCCCc
Q 005646 437 QIVTAVCYRPDGQGGIVG---SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV---SCADSQ 510 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~g---s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~---~s~D~~ 510 (686)
..-.+++|-|.|..+++- +.|+.|.+|.-++-.-. . +.+ ........+..++|+. ++..|++ ......
T Consensus 242 ~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg-~--f~l--~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~ 315 (1265)
T KOG1920|consen 242 GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG-E--FVL--PFPLDEKEVEELAWNS-NSDILAVVTSNLENSL 315 (1265)
T ss_pred ccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc-c--ccc--CCcccccchheeeecC-CCCceeeeecccccce
Confidence 345679999999988874 34667999986542210 0 000 0111223489999999 7788877 445566
Q ss_pred EEEEeCCc
Q 005646 511 VRILQGPN 518 (686)
Q Consensus 511 I~iwd~~~ 518 (686)
|++|...+
T Consensus 316 v~lwt~~N 323 (1265)
T KOG1920|consen 316 VQLWTTGN 323 (1265)
T ss_pred EEEEEecC
Confidence 99998654
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0047 Score=59.44 Aligned_cols=105 Identities=12% Similarity=0.028 Sum_probs=85.1
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcE-EEEEEc
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIV-TAVCYR 445 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V-~~v~~s 445 (686)
+++.||..+.+.--|..+|+.+..-.....+.+-+.- -+++++.|...|.+++.+..++.....+..-+.| ......
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d 102 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD 102 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence 8889999999999999999998877777777776665 4788999999999999999999665433333332 334567
Q ss_pred cCCCEEEEEecCCcEEEEeCCCCeeeee
Q 005646 446 PDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 446 pdg~~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
+++..+.+|+.|++.+..|..+.....+
T Consensus 103 ~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 103 FDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred CCCceEEEecCCCcEEEecccccceEEe
Confidence 8999999999999999999988777654
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.75 E-value=2e-05 Score=86.55 Aligned_cols=124 Identities=16% Similarity=0.156 Sum_probs=97.9
Q ss_pred CCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCC--cEE
Q 005646 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDG--KVR 420 (686)
Q Consensus 345 ~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg--~V~ 420 (686)
++...|+.|...-+|++|+.+. +|+.|+..|.|+++++.+|....... |+.+|+-+.-+- ++..+++.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHH
Confidence 4566788899999999999877 99999999999999999999988888 999999999887 887777665433 467
Q ss_pred EEecCC-CcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeee
Q 005646 421 IWAVLS-CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 421 iwd~~~-~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~ 472 (686)
+|++.. +.....+ ..-.++.|+..-+.-+.|+......+||+.++....
T Consensus 1171 LW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ 1220 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQ 1220 (1516)
T ss_pred HhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHH
Confidence 899865 2222222 233578888877777778888889999999887543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0043 Score=60.77 Aligned_cols=147 Identities=15% Similarity=0.163 Sum_probs=92.7
Q ss_pred EEEeeCCCEEEEEECCCcEEEEECCCC--eeeeEee----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE
Q 005646 359 DLSWSKNNYLLSASIDKTVRLWRVGND--HCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 359 ~l~~s~~~~L~s~s~Dg~V~iWd~~~~--~~~~~~~----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~ 432 (686)
.++.+.+|.|++.-.|..|.|-..+.. .++.... ..-.-..++|+| |+.+||.+...|+|++||+....+...
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeEEc
Confidence 356677887777778888888765532 2222222 334568899999 999999999999999999987554422
Q ss_pred e-------ccCCcEEEEEEccCC------CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 433 V-------DIRQIVTAVCYRPDG------QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 433 ~-------~~~~~V~~v~~spdg------~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
. .....|..+.|.+-. ..|++-...|.++=|-+..+..+...+.............|+++.++| ..
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h 159 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KH 159 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CC
Confidence 2 223456667675521 246666788888888874332111111111111222346799999999 55
Q ss_pred CeEEEEeC
Q 005646 500 SKVMVSCA 507 (686)
Q Consensus 500 ~~l~~~s~ 507 (686)
++|++|+.
T Consensus 160 ~LLlVgG~ 167 (282)
T PF15492_consen 160 RLLLVGGC 167 (282)
T ss_pred CEEEEecc
Confidence 66666654
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.017 Score=55.73 Aligned_cols=69 Identities=9% Similarity=-0.005 Sum_probs=47.2
Q ss_pred CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEE-EEEeeCCCEEEEEeCCCcEEEEEeecCeeeeee
Q 005646 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILT-MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEV 288 (686)
Q Consensus 212 ~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~-l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~ 288 (686)
-+++++.|...|.+++-+.+...+-. .+..- +.|.+ -...+++.++..|+.|++.+.-|..+..++.+.
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w-------~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIW-------NFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhhee-------eeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 46778999999999998877654311 11111 12222 223568899999999999999999887765543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00063 Score=74.80 Aligned_cols=68 Identities=13% Similarity=0.231 Sum_probs=59.0
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
+.+++|+|.. .|+.|=.-|.+.+|...+.+.-.... |+.+|..+.|+| +|+.++++..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 4569999999 88888888999999988776655444 999999999999 99999999999999999764
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0074 Score=59.85 Aligned_cols=166 Identities=13% Similarity=0.181 Sum_probs=96.6
Q ss_pred EEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 348 HEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 348 ~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
..+.+-...+..|+|+|+. +++.....+.|...+. .|+.++.+. --+..-.|++.. ++.++++--.++.+.+++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEE
Confidence 3455666789999999975 5555666778887886 578888877 336678888875 565555554589999999
Q ss_pred cCCC--c--E--EEEe------ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC--C-eeeeeeeEEeeccccCCCCC
Q 005646 424 VLSC--H--V--VDWV------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD--N-HLELDAEICVHSKKKAPCKR 488 (686)
Q Consensus 424 ~~~~--~--~--~~~~------~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~--~-~~~~~~~~~~~~~~~~~~~~ 488 (686)
+... . . .... .....+-.++|+|.++.|+++-...-..+|.+.. . ....................
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 8432 1 1 1111 1345689999999988888887777777777754 1 11111100000112234456
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 489 ITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 489 I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
+.++.++|..+.+++.......|.++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d 199 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD 199 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC
Confidence 899999997777888877777777776
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0094 Score=66.41 Aligned_cols=208 Identities=12% Similarity=0.143 Sum_probs=131.8
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCc-eEEEEEeeCCCEEEEEeCCCc-----EEEEE
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGS-ILTMKFSPDGQYLASAGDDGV-----VRLWQ 278 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fspdg~~Lasgs~Dg~-----I~vWd 278 (686)
.+.+++..+..++.|+.+|.|.+.+-.-. ..+.+++|... |..+.......+|++.++|+. |+||+
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~--------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~ 98 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQ--------LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWD 98 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccce--------eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEec
Confidence 66778889999999999999988853221 12457778777 444444444478999888754 99999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
++..+.- ..+.|+... .+++ ..+.....++.
T Consensus 99 lek~~~n-------~sP~c~~~~-------------------------------ri~~-----------~~np~~~~p~s 129 (933)
T KOG2114|consen 99 LEKVDKN-------NSPQCLYEH-------------------------------RIFT-----------IKNPTNPSPAS 129 (933)
T ss_pred ccccCCC-------CCcceeeee-------------------------------eeec-----------cCCCCCCCcce
Confidence 8754310 001111000 0000 00112356778
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECC--CC-eeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc-EEE
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVG--ND-HCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VVD 431 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~--~~-~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-~~~ 431 (686)
+++.+.+- .++.|-.+|.|..+.-+ .. .....+. ...+||.+++.. ++..++-...-..|.+|.+.... .+.
T Consensus 130 ~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~gr~p~~~ 208 (933)
T KOG2114|consen 130 SLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSGRTPSLK 208 (933)
T ss_pred EEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEecCCCccee
Confidence 88888877 88899999999988532 11 1122233 568999999987 77663333345579999988554 223
Q ss_pred -EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee
Q 005646 432 -WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 432 -~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
.-.+...+.|..+++....+++++ +..+.+|+....+..
T Consensus 209 ~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 209 VLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPC 248 (933)
T ss_pred eeccCCccceeeecCCCCccEEEec-CceEEEEcCCCccee
Confidence 445566788888887655455553 457999998765543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0024 Score=68.55 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=79.8
Q ss_pred eCCCCeEEEEEeecCCCEEEEEE----cCCc----EEEEecCCCcE----EEEeccCCcEEEEEEccCCCEEEEEecCCc
Q 005646 392 PHSNYVTCVHFNPVDDNYFISGS----IDGK----VRIWAVLSCHV----VDWVDIRQIVTAVCYRPDGQGGIVGSMMGD 459 (686)
Q Consensus 392 ~h~~~V~~v~fsp~~~~~l~sgs----~Dg~----V~iwd~~~~~~----~~~~~~~~~V~~v~~spdg~~l~~gs~dg~ 459 (686)
..+....++.|+-.+++.+.|.. .+|. -.+|++...++ +..+.++..|.+.+++|+...++.|+.||.
T Consensus 203 rTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS 282 (545)
T PF11768_consen 203 RTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS 282 (545)
T ss_pred EecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe
Confidence 34555577888775666666543 2343 34566665543 245678889999999999999999999999
Q ss_pred EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEE
Q 005646 460 CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVY 539 (686)
Q Consensus 460 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~ 539 (686)
|.+||...+.-... + ..-..+.++|+| +|..+++|++.|.+.
T Consensus 283 iiLyD~~~~~t~~~-k---------a~~~P~~iaWHp----------------------------~gai~~V~s~qGelQ 324 (545)
T PF11768_consen 283 IILYDTTRGVTLLA-K---------AEFIPTLIAWHP----------------------------DGAIFVVGSEQGELQ 324 (545)
T ss_pred EEEEEcCCCeeeee-e---------ecccceEEEEcC----------------------------CCcEEEEEcCCceEE
Confidence 99999876532211 0 112356677777 777777777777777
Q ss_pred EEeCCCC
Q 005646 540 MWNCIGH 546 (686)
Q Consensus 540 iWd~~~~ 546 (686)
+||+.-.
T Consensus 325 ~FD~ALs 331 (545)
T PF11768_consen 325 CFDMALS 331 (545)
T ss_pred EEEeecC
Confidence 7777554
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=3.3e-05 Score=82.42 Aligned_cols=161 Identities=14% Similarity=0.181 Sum_probs=102.6
Q ss_pred ccCCCCeeEEEeeCCC--EEEEEE----CCCcEEEEECCCC--eeeeEee----CCCCeEEEEEeecCCCEEEEEEcCCc
Q 005646 351 HGHSGEILDLSWSKNN--YLLSAS----IDKTVRLWRVGND--HCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGK 418 (686)
Q Consensus 351 ~~h~~~V~~l~~s~~~--~L~s~s----~Dg~V~iWd~~~~--~~~~~~~----h~~~V~~v~fsp~~~~~l~sgs~Dg~ 418 (686)
.+|....++++|++-. .||+|- .|..+.|||+.++ .+..... ......+++|.. +.+++++|.....
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~ 177 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRS 177 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccch
Confidence 3577899999999865 676663 3568999999887 2222211 334566889985 8999999999999
Q ss_pred EEEEecCCCcEEEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeC-CCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 419 VRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNV-SDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 419 V~iwd~~~~~~~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
+.++|++........-....+..+...| .+.+++.- .||.|-+||. .+-+-.+ +...+. .....+.+..++|+|
T Consensus 178 ~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl--~~i~~~-~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 178 VHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPL--QIILRN-ENKKPKQLFALAYCP 253 (783)
T ss_pred hhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc-ccCceeeccchhhhccHH--HHHhhC-CCCcccceeeEEecc
Confidence 9999998432221111233466778888 67777665 5999999994 2211111 011111 112224689999999
Q ss_pred CCCCeEEEEeCC-CcEEEEeC
Q 005646 497 QDSSKVMVSCAD-SQVRILQG 516 (686)
Q Consensus 497 ~~~~~l~~~s~D-~~I~iwd~ 516 (686)
-...++++...| ++|+++++
T Consensus 254 trtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 254 TRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred CCcchhhhhccCcceEEEecc
Confidence 654455555443 45566653
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0082 Score=65.50 Aligned_cols=137 Identities=18% Similarity=0.180 Sum_probs=96.5
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.-+++...+++++.|+..|.+.+|+....... .....+-.+.+..+..+++..++|.|+..|.|.|+.++....
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~------~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR------KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhh------cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 45677888999999999999999986544321 122233556777888899888999999999999998876431
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
. ..+++.+. -+.|...|++++|++
T Consensus 111 ~----------~~~~~t~~----------------------------------------------d~~~~~rVTal~Ws~ 134 (726)
T KOG3621|consen 111 R----------DLDYVTPC----------------------------------------------DKSHKCRVTALEWSK 134 (726)
T ss_pred C----------cceeeccc----------------------------------------------cccCCceEEEEEecc
Confidence 1 11111110 023889999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCe-----eeeEeeCCCCeEEEEEe
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDH-----CLRVFPHSNYVTCVHFN 403 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~-----~~~~~~h~~~V~~v~fs 403 (686)
++ .+++|...|+|.+-.+.+.. ....+.....|..+...
T Consensus 135 ~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 135 NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 99 99999999999998888721 11222255677777664
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.085 Score=57.03 Aligned_cols=125 Identities=13% Similarity=0.067 Sum_probs=69.9
Q ss_pred CCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCC
Q 005646 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (686)
Q Consensus 406 ~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 485 (686)
+....+....++.+.+.+-..... ....+++..+++||+|+++|.-..+|.+.+.+..-.+........ .
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-------~ 258 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD-------S 258 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC-------c
Confidence 455555555566666444333211 233568999999999999999999999999876544333222111 2
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-ceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-VIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
......+.|+-+ . .++..- ...|.++.... .+.+.-++..++..-.|| |||..-+
T Consensus 259 ~~~p~~~~WCG~-d-av~l~~-~~~l~lvg~~~~~~~~~~~~~~~l~~E~DG-~riit~~ 314 (410)
T PF04841_consen 259 KSPPKQMAWCGN-D-AVVLSW-EDELLLVGPDGDSISFWYDGPVILVSEIDG-VRIITST 314 (410)
T ss_pred CCCCcEEEEECC-C-cEEEEe-CCEEEEECCCCCceEEeccCceEEeccCCc-eEEEeCC
Confidence 244667888873 2 222222 34455544322 233433444444444554 6666543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.006 Score=51.55 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=55.9
Q ss_pred eEEEEEeecCC---CEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe
Q 005646 397 VTCVHFNPVDD---NYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 397 V~~v~fsp~~~---~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
|++|++...++ +.|++|+.|..||+|+- ..++..+.....|++++.... ..++.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCccee
Confidence 67888876443 68999999999999964 467777777888999988777 468889999999999875433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00025 Score=77.82 Aligned_cols=184 Identities=14% Similarity=0.116 Sum_probs=125.8
Q ss_pred eEEEeeCCC-EEEEEEC----CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE
Q 005646 358 LDLSWSKNN-YLLSASI----DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 358 ~~l~~s~~~-~L~s~s~----Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~ 432 (686)
+-.+|+|.. +++.++. .|.|.|| .++|.+.+....+-.+++++|+| ..-.|+.|=.-|.+.+|...+.+....
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccCh-HHHHHhhccccceeEEEecCCceeeee
Confidence 445799988 7776663 5788888 56777766666566678899999 788888898899999999988877644
Q ss_pred -eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC-----CCeEEEEe
Q 005646 433 -VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD-----SSKVMVSC 506 (686)
Q Consensus 433 -~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~-----~~~l~~~s 506 (686)
..|+.+|..+.|+|+|..++++..-|.+.+|........+...+.-+ .....-...++.++++. ..+.++++
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~h--el~~~ltl~cfRL~~~~Ee~~~laKaaVtg 174 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQH--ELNDQLTLWCFRLSYDREEKFKLAKAAVTG 174 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhh--HhhceeeEEEEecCCChHHhhhhhhhhccC
Confidence 46889999999999999999999999999998763322221111111 11111224455555531 22455566
Q ss_pred CCCcEE-EEeCCc-------ceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 507 ADSQVR-ILQGPN-------VIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 507 ~D~~I~-iwd~~~-------~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
.++.+- .++... .-.-.|+|..+..++.+|+|+--|-+.
T Consensus 175 De~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g 221 (1416)
T KOG3617|consen 175 DESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNG 221 (1416)
T ss_pred chhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCC
Confidence 655554 333221 122345888888889999998877544
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.045 Score=55.76 Aligned_cols=111 Identities=13% Similarity=0.151 Sum_probs=72.4
Q ss_pred CeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeee---------------EeeCCCCeEEEE-EeecCCCEEEEEEcCCc
Q 005646 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLR---------------VFPHSNYVTCVH-FNPVDDNYFISGSIDGK 418 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~---------------~~~h~~~V~~v~-fsp~~~~~l~sgs~Dg~ 418 (686)
.|..+...++- .|+.-+ |+.+.++++..-.... .+.....+...+ -....+...+......+
T Consensus 37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~ 115 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK 115 (275)
T ss_pred eEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence 38888888866 444433 5999999987654433 222334444444 11224445555566679
Q ss_pred EEEEecCCC-----cEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 419 VRIWAVLSC-----HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 419 V~iwd~~~~-----~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
|.+|..... +....+.....+..++|. ++.+++|..+ ...+.|+.++..
T Consensus 116 i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~ 169 (275)
T PF00780_consen 116 ILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSP 169 (275)
T ss_pred EEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCc
Confidence 999988653 344566778889999998 5578888654 588889986554
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.062 Score=53.36 Aligned_cols=204 Identities=13% Similarity=0.150 Sum_probs=101.1
Q ss_pred eecccCCceEEEEEeeCCC-EEEEEeCCCcEEEEEeecCeeeeeeccCC-CCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 245 EIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPE-IDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+.+-...+..|+|.|+.+ ++++....+.|...+. +|+.+..+.+.. .+.-.+.+..+.. ..+.-.........
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~---~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGR---YVLSEERDQRLYIF 91 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTE---EEEEETTTTEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCE---EEEEEcCCCcEEEE
Confidence 4445556699999999755 5666667788877775 577777776543 2222222221110 00000111111111
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEe---ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCC---CeeeeEee---
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEF---HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN---DHCLRVFP--- 392 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~---~~~~~~~~--- 392 (686)
...... ............+ ..+...+-.|+|.+.+ .|+.+-...-.+|+.+.. ...+....
T Consensus 92 ~~~~~~---------~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 92 TIDDDT---------TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp EE-------------TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HH
T ss_pred EEeccc---------cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccc
Confidence 110000 0000000000111 2355678999999987 777777777777777654 22221111
Q ss_pred ------CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCC----------cEEEEEEccCCCEEEEEec
Q 005646 393 ------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ----------IVTAVCYRPDGQGGIVGSM 456 (686)
Q Consensus 393 ------h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~----------~V~~v~~spdg~~l~~gs~ 456 (686)
....+.+++++|.++++++.......|.++| .+++++....... ..-.|+|.++|++.+++ .
T Consensus 163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-E 240 (248)
T PF06977_consen 163 LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-E 240 (248)
T ss_dssp HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-T
T ss_pred cccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-C
Confidence 3456889999998888888888899999999 6777776554433 47889999999766655 5
Q ss_pred CCcEEEE
Q 005646 457 MGDCRFY 463 (686)
Q Consensus 457 dg~i~iw 463 (686)
-+..++|
T Consensus 241 pNlfy~f 247 (248)
T PF06977_consen 241 PNLFYRF 247 (248)
T ss_dssp TTEEEEE
T ss_pred CceEEEe
Confidence 5555444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.031 Score=59.74 Aligned_cols=188 Identities=14% Similarity=0.211 Sum_probs=112.9
Q ss_pred CeeEEEeeCCC-EEEEEECCCcEEEEECCCCeee-------------------------------------------eEe
Q 005646 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCL-------------------------------------------RVF 391 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~-------------------------------------------~~~ 391 (686)
.|..+.++++. .|+.+...|.|.||.....+.. ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57888888886 8888988998888865322111 111
Q ss_pred e-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccC---------CcEEEEEEcc-----CC---CEEEE
Q 005646 392 P-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR---------QIVTAVCYRP-----DG---QGGIV 453 (686)
Q Consensus 392 ~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~---------~~V~~v~~sp-----dg---~~l~~ 453 (686)
. ..++|++++.+ +=.+++.|..+|.+.|.|+|...++...... ..|+++.|.. |+ -.+++
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 1 46889999987 5779999999999999999998887554332 3578888863 33 46889
Q ss_pred EecCCcEEEEeCCC-CeeeeeeeEEeeccccCCCCCeEEEE-EeCC-------------------CCCeEEEEeCCCcEE
Q 005646 454 GSMMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQ-FLPQ-------------------DSSKVMVSCADSQVR 512 (686)
Q Consensus 454 gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~I~~l~-fsp~-------------------~~~~l~~~s~D~~I~ 512 (686)
|+..|.+.+|.+-- ..-.+.. ........+..+|..+. |..+ .-.-+++.+.+..+|
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v--~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSV--QFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEE--EEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EeCCCCEEEEEEecCCCCceEE--EEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 99999999998741 1111111 11111123345555554 2221 112366677788999
Q ss_pred EEeCCcc---------------eeE-----cCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 513 ILQGPNV---------------IGK-----YKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 513 iwd~~~~---------------~~~-----~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++...+. .++ ...+..|++-..+|.|+++.+-.-+
T Consensus 239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred EEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 9886643 122 2256778888899999999997755
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.17 Score=51.96 Aligned_cols=258 Identities=14% Similarity=0.133 Sum_probs=146.3
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe----------CCCcEEEEEeecCeeeeeeccCC
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDIPE 292 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~vWd~~~~~~~~~~~~~~ 292 (686)
+++.|.|.++... . ++.-.+. .-.+..+|||+.+++++ ..-.|.+||..+-....++.++.
T Consensus 17 ~rv~viD~d~~k~--l----Gmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~ 87 (342)
T PF06433_consen 17 SRVYVIDADSGKL--L----GMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPP 87 (342)
T ss_dssp EEEEEEETTTTEE--E----EEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETT
T ss_pred ceEEEEECCCCcE--E----EEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCC
Confidence 5788888765432 1 1111122 23466799999888754 24479999999988777776553
Q ss_pred CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEE-
Q 005646 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLS- 370 (686)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s- 370 (686)
.+ ... .......++++.++ +++.
T Consensus 88 k~----------------------------------------------------R~~---~~~~~~~~~ls~dgk~~~V~ 112 (342)
T PF06433_consen 88 KP----------------------------------------------------RAQ---VVPYKNMFALSADGKFLYVQ 112 (342)
T ss_dssp S-----------------------------------------------------B-----BS--GGGEEE-TTSSEEEEE
T ss_pred cc----------------------------------------------------hhe---ecccccceEEccCCcEEEEE
Confidence 20 000 00122344667777 4433
Q ss_pred -EECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC-CCcEEEE----e-ccCCc-EEEE
Q 005646 371 -ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-SCHVVDW----V-DIRQI-VTAV 442 (686)
Q Consensus 371 -~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~-~~~~~~~----~-~~~~~-V~~v 442 (686)
.+--..|.|-|+..++.+..+.-.+ |...-|..++-|.+-+.||++.-..+. .++.... + ....+ ...-
T Consensus 113 N~TPa~SVtVVDl~~~kvv~ei~~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~ 189 (342)
T PF06433_consen 113 NFTPATSVTVVDLAAKKVVGEIDTPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHP 189 (342)
T ss_dssp EESSSEEEEEEETTTTEEEEEEEGTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--
T ss_pred ccCCCCeEEEEECCCCceeeeecCCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCccccccc
Confidence 3445679999999999988887655 333345445678899999999999887 4554311 1 11222 2234
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccC----CCCCeEEEEEeCCCCCeEEEEe--C-----CC--
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA----PCKRITGFQFLPQDSSKVMVSC--A-----DS-- 509 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~I~~l~fsp~~~~~l~~~s--~-----D~-- 509 (686)
++...+..++.-+.+|.|+--|+..........+.+...... ..+.-.-+++++..+.+++..- . |+
T Consensus 190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 555555566667899999999998877665555443211100 0122345677773333333221 1 22
Q ss_pred cEEEEeCCc--------------ceeEcCCCC-EEEEEe-CCCcEEEEeCCCCC
Q 005646 510 QVRILQGPN--------------VIGKYKDGK-HIVSAG-EDSNVYMWNCIGHE 547 (686)
Q Consensus 510 ~I~iwd~~~--------------~~~~~~dg~-~l~sgs-~Dg~V~iWd~~~~~ 547 (686)
.|-++|..+ .++.+.+.+ +|++.+ .++.+.|||..+++
T Consensus 270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 244445443 355555555 665554 58999999999976
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.02 Score=48.48 Aligned_cols=99 Identities=19% Similarity=0.230 Sum_probs=71.0
Q ss_pred eeEEEee---CCC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE
Q 005646 357 ILDLSWS---KNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (686)
Q Consensus 357 V~~l~~s---~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~ 431 (686)
|++|++. .+| .|+.||.|..||+|+ ....+..+...+.|++++-.. ...|+-+..+|+|-+|+-... +-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~R-lWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQR-LWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCcce-eee
Confidence 4556554 354 899999999999997 457888888889999998876 478999999999999976332 222
Q ss_pred EeccCCcEEEEEEc-cCC---CEEEEEecCCcEE
Q 005646 432 WVDIRQIVTAVCYR-PDG---QGGIVGSMMGDCR 461 (686)
Q Consensus 432 ~~~~~~~V~~v~~s-pdg---~~l~~gs~dg~i~ 461 (686)
. ..+..++++++. .+| .-|++|=.+|.|-
T Consensus 77 i-KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 I-KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred e-ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2 233345665543 343 2688888888764
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.12 Score=54.10 Aligned_cols=110 Identities=18% Similarity=0.171 Sum_probs=75.4
Q ss_pred CCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCe-eeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC--C
Q 005646 353 HSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH-CLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS--C 427 (686)
Q Consensus 353 h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~-~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~--~ 427 (686)
..++|++++-- +++|+.+. .+.|.+|++...+ .+..-. ....++++... +++++.|.....|.++.... .
T Consensus 87 ~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 87 VKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp ESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE
T ss_pred ecCcceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCC
Confidence 46789999876 44544444 5899999998887 544443 44466666654 57999999888888875543 3
Q ss_pred cEEEE--eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 428 HVVDW--VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 428 ~~~~~--~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
++... ......++++.|-++++.++++..+|.+.++....
T Consensus 162 ~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 162 KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 33322 22355689999987778999999999999998863
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.17 Score=56.30 Aligned_cols=172 Identities=10% Similarity=0.077 Sum_probs=95.9
Q ss_pred CCCcEEEEECCCCeeeeEeeCC-C--------------------Ce-EEEEEeecCCCEEEEEEcCC-------------
Q 005646 373 IDKTVRLWRVGNDHCLRVFPHS-N--------------------YV-TCVHFNPVDDNYFISGSIDG------------- 417 (686)
Q Consensus 373 ~Dg~V~iWd~~~~~~~~~~~h~-~--------------------~V-~~v~fsp~~~~~l~sgs~Dg------------- 417 (686)
.++.|.-.|..+++.+..+... . .| ...++.+ .+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~ 251 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGD 251 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCC
Confidence 4678888888888888776521 1 01 1234444 467778887665
Q ss_pred -----cEEEEecCCCcEEEEeccC-CcE------EEEEEc----cCCC---EEEEEecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 418 -----KVRIWAVLSCHVVDWVDIR-QIV------TAVCYR----PDGQ---GGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 418 -----~V~iwd~~~~~~~~~~~~~-~~V------~~v~~s----pdg~---~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
.|.-+|+.+++.+-..... ... ....+. -+|. .+++++.+|.++.+|..+++.........
T Consensus 252 ~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~ 331 (488)
T cd00216 252 NLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE 331 (488)
T ss_pred CCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec
Confidence 6889999999887433211 100 001111 2343 67888899999999999998876544321
Q ss_pred eccccCCCCCeEEEEE---------------eCCCCCeEEEEeCCCcEEEEeCCcc-----------e---eEcCCCCEE
Q 005646 479 HSKKKAPCKRITGFQF---------------LPQDSSKVMVSCADSQVRILQGPNV-----------I---GKYKDGKHI 529 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~f---------------sp~~~~~l~~~s~D~~I~iwd~~~~-----------~---~~~~dg~~l 529 (686)
..... ....|.--.. .+.++.+++.--.+|+ .+|..... . .....+.+|
T Consensus 332 ~~~~~-~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~-~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v 409 (488)
T cd00216 332 QPMAY-DPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK-VVWEKREGTIRDSWNIGFPHWGGSLATAGNLV 409 (488)
T ss_pred ccccc-CCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc-EeeEeeCCccccccccCCcccCcceEecCCeE
Confidence 11000 0011111000 0112223333333443 34443222 0 011266788
Q ss_pred EEEeCCCcEEEEeCCCCC
Q 005646 530 VSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 530 ~sgs~Dg~V~iWd~~~~~ 547 (686)
+.++.||.|+.+|..+++
T Consensus 410 ~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 410 FAGAADGYFRAFDATTGK 427 (488)
T ss_pred EEECCCCeEEEEECCCCc
Confidence 888999999999999887
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0024 Score=69.47 Aligned_cols=147 Identities=13% Similarity=0.147 Sum_probs=101.8
Q ss_pred CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec--cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD--IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 393 h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~--~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
+...|.--++.. ++++++.|+.-|.|++|+-..++...... ....+...+.+++..++|+|+..|.|.+|-+.....
T Consensus 32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 444444444555 78999999999999999988887664443 556677888999999999999999999999876322
Q ss_pred eeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
..++....-.+.|...|+++.|++ ++..+.+|...|+|..-.+.....+--.-+.|. ..|+.|---|...
T Consensus 111 --~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il--~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 111 --RDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEIL--SEDSEIVQLDYLQ 180 (726)
T ss_pred --CcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceee--ccCcceEEeeccc
Confidence 122223333455889999999999 888888888888887776655212212222222 3566655555444
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00083 Score=44.28 Aligned_cols=35 Identities=49% Similarity=1.079 Sum_probs=31.5
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
..+.+|...|+++.|.+++.++++++.|+.+++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34567899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.58 Score=49.61 Aligned_cols=265 Identities=14% Similarity=0.173 Sum_probs=127.9
Q ss_pred eccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCC-------
Q 005646 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE------- 292 (686)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~------- 292 (686)
+..+.+.|+++.+... . .+......+....|||+|++||-.. ++.|.+++..++...+.-....
T Consensus 20 s~~~~y~i~d~~~~~~--~------~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~ 90 (353)
T PF00930_consen 20 SFKGDYYIYDIETGEI--T------PLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGV 90 (353)
T ss_dssp EEEEEEEEEETTTTEE--E------ESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB
T ss_pred ccceeEEEEecCCCce--E------ECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCc
Confidence 3456788888776432 1 1222256788999999999999885 5789999987774332221110
Q ss_pred ----------CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCc------eEEEeC----------CccccccCCC
Q 005646 293 ----------IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES------ACVVFP----------PKVFRILEKP 346 (686)
Q Consensus 293 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~----------~~~~~~~~~~ 346 (686)
.....+.++++. ..+..+.++......+....-.... ..+.++ ..++++....
T Consensus 91 ~dwvyeEEv~~~~~~~~WSpd~-~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~ 169 (353)
T PF00930_consen 91 PDWVYEEEVFDRRSAVWWSPDS-KYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGK 169 (353)
T ss_dssp --HHHHHHTSSSSBSEEE-TTS-SEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTC
T ss_pred cceeccccccccccceEECCCC-CEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCc
Confidence 011222222222 2222233332222222211111110 011111 0112222222
Q ss_pred eEEe------ccCCCCeeEEEeeCCC-EEEEEE--CCC---cEEEEECCCCeeeeEee--CCCCe---EEEEEe-ecCCC
Q 005646 347 LHEF------HGHSGEILDLSWSKNN-YLLSAS--IDK---TVRLWRVGNDHCLRVFP--HSNYV---TCVHFN-PVDDN 408 (686)
Q Consensus 347 ~~~l------~~h~~~V~~l~~s~~~-~L~s~s--~Dg---~V~iWd~~~~~~~~~~~--h~~~V---~~v~fs-p~~~~ 408 (686)
...+ ..-...+..+.|.+++ .|+..- .+. .+.+.|..++.+...+. ....| ....|. +.+..
T Consensus 170 ~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~ 249 (353)
T PF00930_consen 170 TTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNE 249 (353)
T ss_dssp CCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSE
T ss_pred EEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCE
Confidence 2121 1234567889999988 355443 332 46777887776544443 33333 355655 63555
Q ss_pred EEEEEEcCCc--EEEEecCCCcEEEEeccCCcEEE-EEEccCCCEEE-EEecC--Cc--EEEEeCC-CCeeeeeeeEEee
Q 005646 409 YFISGSIDGK--VRIWAVLSCHVVDWVDIRQIVTA-VCYRPDGQGGI-VGSMM--GD--CRFYNVS-DNHLELDAEICVH 479 (686)
Q Consensus 409 ~l~sgs~Dg~--V~iwd~~~~~~~~~~~~~~~V~~-v~~spdg~~l~-~gs~d--g~--i~iwd~~-~~~~~~~~~~~~~ 479 (686)
+|.....||. |.+++..++....+....-.|+. +.++++++.|+ ++..+ +. ++.-++. .+.+.. +.
T Consensus 250 ~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~-----LT 324 (353)
T PF00930_consen 250 FLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKC-----LT 324 (353)
T ss_dssp EEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEE-----SS
T ss_pred EEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEe-----cc
Confidence 6666667775 55556666665555555566755 67888877665 44432 23 4444555 333321 11
Q ss_pred ccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 480 SKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 480 ~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
.....| ..+.|+| +++.++.
T Consensus 325 ~~~~~~----~~~~~Sp-dg~y~v~ 344 (353)
T PF00930_consen 325 CEDGDH----YSASFSP-DGKYYVD 344 (353)
T ss_dssp TTSSTT----EEEEE-T-TSSEEEE
T ss_pred CCCCCc----eEEEECC-CCCEEEE
Confidence 111111 6889999 4444433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.32 Score=49.97 Aligned_cols=143 Identities=10% Similarity=0.069 Sum_probs=83.5
Q ss_pred EEEEEECCCcEEEEECC-CCeeeeE----ee-CCCCe-EEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE---Eecc-
Q 005646 367 YLLSASIDKTVRLWRVG-NDHCLRV----FP-HSNYV-TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD---WVDI- 435 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~-~~~~~~~----~~-h~~~V-~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~---~~~~- 435 (686)
.+.+-+.||++.-..+. .|+.... |. ..+++ ..-++.. .+..++--+.+|.|+--|+....... +.-.
T Consensus 149 ~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 149 GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp EEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred ceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 45566667777666665 3333222 11 12222 2233433 55566667889999998887765431 1110
Q ss_pred ---------CCcEEEEEEccCCCEEEEEecCC----------cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 436 ---------RQIVTAVCYRPDGQGGIVGSMMG----------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 436 ---------~~~V~~v~~spdg~~l~~gs~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
.+.-.-+++++..+.|++....| .|.+||+.+++......+. ..+.+|+.+.
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~---------~~~~Si~Vsq 298 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE---------HPIDSIAVSQ 298 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE---------EEESEEEEES
T ss_pred ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC---------CccceEEEcc
Confidence 12233477887666655532221 3888899998877654432 2377999999
Q ss_pred CCCCeEEEE-eCCCcEEEEeCCcc
Q 005646 497 QDSSKVMVS-CADSQVRILQGPNV 519 (686)
Q Consensus 497 ~~~~~l~~~-s~D~~I~iwd~~~~ 519 (686)
++..+|+.. ..++.+.+||..+.
T Consensus 299 d~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 299 DDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp SSS-EEEEEETTTTEEEEEETTT-
T ss_pred CCCcEEEEEcCCCCeEEEEeCcCC
Confidence 777777655 45899999999864
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0027 Score=68.25 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=75.4
Q ss_pred CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEE-EEEEccCCCEEEEEecCCcEEEEeCCCCeee
Q 005646 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT-AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 393 h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~-~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
-...|.-+.|+| .-.+||.+..+|.|-+..+.-.++....-+...++ ++||.|||+.+|+|-.||+|++.|+.++...
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 456788899999 89999999999999999998555555554666676 9999999999999999999999999987754
Q ss_pred eeeeEEeeccccCCCCCeEEEEEeC
Q 005646 472 LDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 472 ~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
... .......|+.+-|.+
T Consensus 98 ~~~-------~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSF-------LFSVETDISKGIWDR 115 (665)
T ss_pred ecc-------ccccccchheeeccc
Confidence 332 122234567777754
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.095 Score=58.00 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=78.2
Q ss_pred eCCC-EEEEEECCCcEEEEECCC-----CeeeeEeeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecCCCc-------
Q 005646 363 SKNN-YLLSASIDKTVRLWRVGN-----DHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCH------- 428 (686)
Q Consensus 363 s~~~-~L~s~s~Dg~V~iWd~~~-----~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~~~------- 428 (686)
.++| +... .++.|.+.|..+ .+.+..+.-......+.++| |++++++++ .+.+|.|.|+.+.+
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 3456 3333 367899999998 46677777888889999999 888877665 58999999998855
Q ss_pred -----EEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 429 -----VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 429 -----~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
++............+|.++|+...+-..|..|-.||+..
T Consensus 362 ~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 233334444556789999999888888899999999875
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.13 Score=53.84 Aligned_cols=130 Identities=13% Similarity=0.196 Sum_probs=83.0
Q ss_pred CcEEEEECCCC-----ee--eeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc-EEEEeccCC--cEEEEEE
Q 005646 375 KTVRLWRVGND-----HC--LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VVDWVDIRQ--IVTAVCY 444 (686)
Q Consensus 375 g~V~iWd~~~~-----~~--~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~~~~--~V~~v~~ 444 (686)
|.|.++++... +. +......++|++|+-- ++ +|+.+. .++|.+|++...+ +.....+.. .++++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999884 22 2223378999999875 33 444444 5899999999888 664444433 4555544
Q ss_pred ccCCCEEEEEecCCcEEEEeCCC--CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeE
Q 005646 445 RPDGQGGIVGSMMGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK 522 (686)
Q Consensus 445 spdg~~l~~gs~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~ 522 (686)
.++++++|.....+.++.... .++... . .......++++.|.+
T Consensus 138 --~~~~I~vgD~~~sv~~~~~~~~~~~l~~v------a-~d~~~~~v~~~~~l~-------------------------- 182 (321)
T PF03178_consen 138 --FKNYILVGDAMKSVSLLRYDEENNKLILV------A-RDYQPRWVTAAEFLV-------------------------- 182 (321)
T ss_dssp --ETTEEEEEESSSSEEEEEEETTTE-EEEE------E-EESS-BEEEEEEEE---------------------------
T ss_pred --cccEEEEEEcccCEEEEEEEccCCEEEEE------E-ecCCCccEEEEEEec--------------------------
Confidence 466999999989998885543 222211 1 111234577888876
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCC
Q 005646 523 YKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 523 ~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+++.++.+..+|.|.++..+.
T Consensus 183 --d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 183 --DEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp --SSSEEEEEETTSEEEEEEE-S
T ss_pred --CCcEEEEEcCCCeEEEEEECC
Confidence 446788888888888888764
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0029 Score=68.02 Aligned_cols=91 Identities=15% Similarity=0.249 Sum_probs=78.7
Q ss_pred CCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeE-EEEEeecCCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVT-CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~-~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
...|.-+.|+|.- ++|.+..+|.|.+..+. .+.+.++. ++..++ +++|.| ||+.|+.|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 3467889999987 99999999999999998 88888888 887787 999999 9999999999999999999998877
Q ss_pred EE--eccCCcEEEEEEcc
Q 005646 431 DW--VDIRQIVTAVCYRP 446 (686)
Q Consensus 431 ~~--~~~~~~V~~v~~sp 446 (686)
.- ......|.++-|.|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 54 44566788888864
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.5 Score=48.04 Aligned_cols=161 Identities=12% Similarity=0.137 Sum_probs=94.2
Q ss_pred cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeecc
Q 005646 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 211 ~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
..++.++.|+.+| +.+++....... . -..+...|..|...|+-+.|+.-+ |+.++++++..-........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~-~-------~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKP-T-------RILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccc-e-------eEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccc
Confidence 4567889998888 888887221111 1 111334499999999877776664 59999999876542221100
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE--eeCCC-E
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS--WSKNN-Y 367 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~--~s~~~-~ 367 (686)
... . +. .....-......+...+ -...+ .
T Consensus 75 ~~~--------------------~-----------~~-----------------~~~~~~~~~~~~v~~f~~~~~~~~~~ 106 (275)
T PF00780_consen 75 LAF--------------------P-----------KS-----------------RSLPTKLPETKGVSFFAVNGGHEGSR 106 (275)
T ss_pred ccc--------------------c-----------cc-----------------ccccccccccCCeeEEeeccccccce
Confidence 000 0 00 00000001122333333 11223 4
Q ss_pred EEEEECCCcEEEEECCCC-----eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe
Q 005646 368 LLSASIDKTVRLWRVGND-----HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV 433 (686)
Q Consensus 368 L~s~s~Dg~V~iWd~~~~-----~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~ 433 (686)
.+.....++|.+|..... +..+.+.....+.+++|. ++.++.|..++ ..+.|+.++....+.
T Consensus 107 ~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~---~~~i~v~~~~~-f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 107 RLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL---GNKICVGTSKG-FYLIDLNTGSPSELL 173 (275)
T ss_pred EEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe---CCEEEEEeCCc-eEEEecCCCCceEEe
Confidence 444555568888887653 466677788999999997 46787777554 778899987766554
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0028 Score=41.59 Aligned_cols=37 Identities=38% Similarity=0.770 Sum_probs=32.0
Q ss_pred eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 386 HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 386 ~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
+++..+. |...|+++.|+| .+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 4555555 888999999999 779999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.021 Score=65.25 Aligned_cols=96 Identities=13% Similarity=0.160 Sum_probs=70.3
Q ss_pred EEEEEECCCcEEEEECCCCe--eee----EeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcE
Q 005646 367 YLLSASIDKTVRLWRVGNDH--CLR----VFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIV 439 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~--~~~----~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V 439 (686)
..+.|-.+..+..||.+-.. ++. .+......+|++-. ...+||.|+.+|.||+||-...+.. .+.+...+|
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI 621 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI 621 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEec--CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCe
Confidence 45667778889999988542 332 22355667888766 4668999999999999995443333 334668999
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEeC
Q 005646 440 TAVCYRPDGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 440 ~~v~~spdg~~l~~gs~dg~i~iwd~ 465 (686)
..|..+.||++|++. .+..+.++++
T Consensus 622 ~~iDvt~DGkwilaT-c~tyLlLi~t 646 (794)
T PF08553_consen 622 IGIDVTADGKWILAT-CKTYLLLIDT 646 (794)
T ss_pred eEEEecCCCcEEEEe-ecceEEEEEE
Confidence 999999999998765 4567888876
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.08 Score=57.19 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=68.4
Q ss_pred eEEEeeCCC--EEEEEECCCc--EEEEECCCCeeeeEeeCC-CCeEEEEEeecCCCEEEEEE-cCCc--EEEEecCCCcE
Q 005646 358 LDLSWSKNN--YLLSASIDKT--VRLWRVGNDHCLRVFPHS-NYVTCVHFNPVDDNYFISGS-IDGK--VRIWAVLSCHV 429 (686)
Q Consensus 358 ~~l~~s~~~--~L~s~s~Dg~--V~iWd~~~~~~~~~~~h~-~~V~~v~fsp~~~~~l~sgs-~Dg~--V~iwd~~~~~~ 429 (686)
...+|+|+| ++++...|+. |.+.|+..+...+ +.+. +.-+.=.|+| +|+.++-.+ ..|. |.++++.....
T Consensus 241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred CCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCce
Confidence 456899999 5666777776 4555776666333 4433 2223567889 787776655 3444 66667777665
Q ss_pred EEEeccCCcEEEEEEccCCCEEEEEecC-Cc--EEEEeCCCCe
Q 005646 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMM-GD--CRFYNVSDNH 469 (686)
Q Consensus 430 ~~~~~~~~~V~~v~~spdg~~l~~gs~d-g~--i~iwd~~~~~ 469 (686)
.........-..-.|+|||++++..+.. |. |.++|+.++.
T Consensus 319 ~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 319 TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 4433333322377899999999887643 44 5566655443
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.26 Score=53.30 Aligned_cols=164 Identities=13% Similarity=0.127 Sum_probs=89.5
Q ss_pred cEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec-------c-CCcEEEEEEcc
Q 005646 376 TVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-------I-RQIVTAVCYRP 446 (686)
Q Consensus 376 ~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-------~-~~~V~~v~~sp 446 (686)
.|+||+. .|+.+..+. ..+.|.++.|.. ...|++-..||.+++||+.... ....+ . ...+.+..+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence 5899976 455666666 448999999986 4556677789999999997444 11111 0 11122223333
Q ss_pred CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecccc-CC-CCCeEE-EEEeCCCCCeEEEEeCCCcEEEEeC-------
Q 005646 447 DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK-AP-CKRITG-FQFLPQDSSKVMVSCADSQVRILQG------- 516 (686)
Q Consensus 447 dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~-~~~I~~-l~fsp~~~~~l~~~s~D~~I~iwd~------- 516 (686)
+| +++-+.++.+.+.+-.................. .+ ...... ..++. +....+....++.+.+.+.
T Consensus 138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~i~ 214 (410)
T PF04841_consen 138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQID 214 (410)
T ss_pred CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccccccc
Confidence 44 444455565555432221111000000000000 00 011111 23444 4444555555667774432
Q ss_pred ----CcceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 517 ----PNVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 517 ----~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
...++.+|+|++||.-..+|.+.|...+-.
T Consensus 215 ~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 235789999999999999999999876543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.65 Score=46.11 Aligned_cols=182 Identities=13% Similarity=0.114 Sum_probs=111.0
Q ss_pred ceEEEEEeeCCCEEEEEeCCC--cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCC
Q 005646 252 SILTMKFSPDGQYLASAGDDG--VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg--~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (686)
-...+.|..+|.++-+.|.-| .|+.+|+.+++......++..-
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~----------------------------------- 90 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY----------------------------------- 90 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------------------------------------
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc-----------------------------------
Confidence 345788878898888888766 7999999998866655543210
Q ss_pred ceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCE
Q 005646 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY 409 (686)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~ 409 (686)
| -.-+.-+.+.+..|.| .++...+||..+.+.+..+...+.=+.++. ++..
T Consensus 91 ----------F------gEGit~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EGWGLt~---dg~~ 141 (264)
T PF05096_consen 91 ----------F------GEGITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEGWGLTS---DGKR 141 (264)
T ss_dssp -----------------EEEEEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS--EEEE---CSSC
T ss_pred ----------c------ceeEEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcceEEEc---CCCE
Confidence 0 0001113445666666 468899999999999999997777778873 6667
Q ss_pred EEEEEcCCcEEEEecCCCcEEEEecc---CC---cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc--
Q 005646 410 FISGSIDGKVRIWAVLSCHVVDWVDI---RQ---IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK-- 481 (686)
Q Consensus 410 l~sgs~Dg~V~iwd~~~~~~~~~~~~---~~---~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~-- 481 (686)
|+......+|+++|..+.+.+..... .. .++-+.|- +|...|=-=....|..-|..+++......+.....
T Consensus 142 Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~ 220 (264)
T PF05096_consen 142 LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEV 220 (264)
T ss_dssp EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHH
T ss_pred EEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcc
Confidence 77776677899999988766543322 22 34556664 66555555556778888888887655332221110
Q ss_pred -----ccCCCCCeEEEEEeCCC
Q 005646 482 -----KKAPCKRITGFQFLPQD 498 (686)
Q Consensus 482 -----~~~~~~~I~~l~fsp~~ 498 (686)
......-.+++++.|..
T Consensus 221 ~~~~~~~~~~dVLNGIAyd~~~ 242 (264)
T PF05096_consen 221 GRDKSRQPDDDVLNGIAYDPET 242 (264)
T ss_dssp TSTTST--TTS-EEEEEEETTT
T ss_pred cccccccccCCeeEeEeEeCCC
Confidence 01113458899999943
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.12 Score=55.74 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=81.0
Q ss_pred EEeccCCCCeeEEEeeCCC-EEEEE---ECC-CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEE-EEEcCCc--E
Q 005646 348 HEFHGHSGEILDLSWSKNN-YLLSA---SID-KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDGK--V 419 (686)
Q Consensus 348 ~~l~~h~~~V~~l~~s~~~-~L~s~---s~D-g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~-sgs~Dg~--V 419 (686)
..+..-...+..-+|+|++ .++-. ... ..+.++++.+++........+.-..-+|+| +++.|+ +...||. |
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~i 264 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCccE
Confidence 3333444567778899998 33322 222 359999999998877777666666788999 666555 4556665 6
Q ss_pred EEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEec-CCc--EEEEeCCCCe
Q 005646 420 RIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MGD--CRFYNVSDNH 469 (686)
Q Consensus 420 ~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~-dg~--i~iwd~~~~~ 469 (686)
.++|+.++....+....+.-+.=.|+|||+.++..+. .|. |.+++.....
T Consensus 265 y~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 265 YLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred EEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 6668888776665555555557789999998887654 444 6666665544
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.57 Score=49.51 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=79.6
Q ss_pred eCCC-EEEEEE--CC----CcEEEEECCCCeeeeEee----CCCCeEEEEEeecCCCEEEEEEc----------------
Q 005646 363 SKNN-YLLSAS--ID----KTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSI---------------- 415 (686)
Q Consensus 363 s~~~-~L~s~s--~D----g~V~iWd~~~~~~~~~~~----h~~~V~~v~fsp~~~~~l~sgs~---------------- 415 (686)
-|+| .++|+- .+ |-+.+.|-++...+.... ....-..+-|.| ..+.++|...
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhh
Confidence 3666 555542 22 457778877777766665 234556788888 7888888752
Q ss_pred ----CCcEEEEecCCCcEEEEeccC---CcEEEEEEcc--CCCEEEEEe-cCCcEE-EEeCCCCeeeeeeeEEeeccccC
Q 005646 416 ----DGKVRIWAVLSCHVVDWVDIR---QIVTAVCYRP--DGQGGIVGS-MMGDCR-FYNVSDNHLELDAEICVHSKKKA 484 (686)
Q Consensus 416 ----Dg~V~iwd~~~~~~~~~~~~~---~~V~~v~~sp--dg~~l~~gs-~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~ 484 (686)
..+|.+||+.+.+.++.++.. ..+..|.|.. +..+-++|+ -..+|. +|....+....+..+.+......
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 367999999999999888775 3466677755 444444433 344444 44446677666655555433210
Q ss_pred -------------CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 485 -------------PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 485 -------------~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
-..-|+.|..+.++.-+.++.-.+|.||.||+.+
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 0234789999996655666666789999998653
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.044 Score=62.74 Aligned_cols=129 Identities=16% Similarity=0.186 Sum_probs=85.7
Q ss_pred EEEEECCCcEEEEECCCCeeeeEee-CC-CCeEEEEEee----cCCCEEEEEEcCCcEEEEecCCC--cEEE----Eecc
Q 005646 368 LLSASIDKTVRLWRVGNDHCLRVFP-HS-NYVTCVHFNP----VDDNYFISGSIDGKVRIWAVLSC--HVVD----WVDI 435 (686)
Q Consensus 368 L~s~s~Dg~V~iWd~~~~~~~~~~~-h~-~~V~~v~fsp----~~~~~l~sgs~Dg~V~iwd~~~~--~~~~----~~~~ 435 (686)
|........|+-.|+..|+.+..+. |. .+|..++-.. .+...-+.|-.+..|..||.|-. +++. ....
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS 576 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence 3344456889999999999999998 33 3355443211 12445667778889999999864 2342 1223
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
....+|++-+.+| +||+|+.+|.||+||--. +. ......+-+.+|.+|..+. ++++|++++
T Consensus 577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~-------AKT~lp~lG~pI~~iDvt~-DGkwilaTc 637 (794)
T PF08553_consen 577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KR-------AKTALPGLGDPIIGIDVTA-DGKWILATC 637 (794)
T ss_pred CCCceEEEecCCc-eEEEEeCCCcEEeecccc-hh-------hhhcCCCCCCCeeEEEecC-CCcEEEEee
Confidence 4567888888888 889999999999999422 11 1112233458899999999 455544443
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.62 Score=49.92 Aligned_cols=184 Identities=15% Similarity=0.165 Sum_probs=127.4
Q ss_pred eEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc---CCcEEEEecCCCcEEEE
Q 005646 358 LDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI---DGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 358 ~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~---Dg~V~iwd~~~~~~~~~ 432 (686)
..++.++.+ .+++...+..|.+.|..+.+......-......++++| +++.++.+.. ++++.+.|..+.++...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 466777777 45555567999999998888888887555788999999 7766666554 68999999999988866
Q ss_pred eccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe-CC--
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-AD-- 508 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s-~D-- 508 (686)
.........++++|+|+.+++.. .++.|.+.|........ .... ...........+.+.| ++.++.+.. .+
T Consensus 156 ~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~---~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~ 230 (381)
T COG3391 156 IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG---SLVGVGTGPAGIAVDP-DGNRVYVANDGSGS 230 (381)
T ss_pred EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc---cccccCCCCceEEECC-CCCEEEEEeccCCC
Confidence 55443348999999999776665 68899999987765442 1100 0111223456788888 555444443 33
Q ss_pred CcEEEEeCCc----------------ceeEcCCCCEEEEEeCC-CcEEEEeCCCCC
Q 005646 509 SQVRILQGPN----------------VIGKYKDGKHIVSAGED-SNVYMWNCIGHE 547 (686)
Q Consensus 509 ~~I~iwd~~~----------------~~~~~~dg~~l~sgs~D-g~V~iWd~~~~~ 547 (686)
+.+...|..+ .+...|+|+++.+.... +.|.+-|..+..
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 5777777543 24667788888887544 778877776644
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.19 Score=54.51 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=69.2
Q ss_pred C-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC------------cEEEE
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC------------HVVDW 432 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~------------~~~~~ 432 (686)
| +|+..+ ++.|.+||+.+++.++.+.... |..|.|++ ++++++..+.+ .+.|++.... .....
T Consensus 117 G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~ 192 (443)
T PF04053_consen 117 GNLLGVKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI 192 (443)
T ss_dssp SSSEEEEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred CcEEEEEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE
Confidence 6 444444 4489999999999999998664 99999999 89999988855 7888776544 33333
Q ss_pred eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
......|.+.+|..| .++-.+.. .++. +-.+...... .-..++.=+.+.| ..+.+.....|+.|.
T Consensus 193 ~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~---------~ld~~~yllgy~~-~~~~ly~~Dr~~~v~ 257 (443)
T PF04053_consen 193 HEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIA---------HLDKPLYLLGYLP-KENRLYLIDRDGNVI 257 (443)
T ss_dssp EEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEE---------E-SS--EEEEEET-TTTEEEEE-TT--EE
T ss_pred EEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEE---------EcCCceEEEEEEc-cCCEEEEEECCCCEE
Confidence 334677888888765 33333333 4544 3223321100 0113355555666 445666666666666
Q ss_pred EEeCC
Q 005646 513 ILQGP 517 (686)
Q Consensus 513 iwd~~ 517 (686)
.+.+.
T Consensus 258 ~~~ld 262 (443)
T PF04053_consen 258 SYELD 262 (443)
T ss_dssp EEE--
T ss_pred EEEEC
Confidence 66543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.78 Score=51.01 Aligned_cols=107 Identities=13% Similarity=0.146 Sum_probs=71.6
Q ss_pred CEEEEEECCCcEEEEECCCCeeeeEeeCCCC------eE-EEEEeecCCCEEEEEE---------cCCcEEEEecCCCcE
Q 005646 366 NYLLSASIDKTVRLWRVGNDHCLRVFPHSNY------VT-CVHFNPVDDNYFISGS---------IDGKVRIWAVLSCHV 429 (686)
Q Consensus 366 ~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~------V~-~v~fsp~~~~~l~sgs---------~Dg~V~iwd~~~~~~ 429 (686)
+.++.++.++.|.-+|..+++.+..+.-... +. +..+ .+.+++.++ .+|.|.-+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v---~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI---VKKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE---ECCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 5778888899999999999999988873332 11 1222 224555554 368899999999987
Q ss_pred EEEeccC-C--------------------cE-EEEEEccCCCEEEEEecCC------------------cEEEEeCCCCe
Q 005646 430 VDWVDIR-Q--------------------IV-TAVCYRPDGQGGIVGSMMG------------------DCRFYNVSDNH 469 (686)
Q Consensus 430 ~~~~~~~-~--------------------~V-~~v~~spdg~~l~~gs~dg------------------~i~iwd~~~~~ 469 (686)
+-..... . .+ ...++.+.+..+++++.++ .+.-+|..+++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 7333221 1 01 1345555667888887665 68899999988
Q ss_pred eeeeee
Q 005646 470 LELDAE 475 (686)
Q Consensus 470 ~~~~~~ 475 (686)
.....+
T Consensus 268 ~~W~~~ 273 (488)
T cd00216 268 VKWFYQ 273 (488)
T ss_pred EEEEee
Confidence 776443
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.27 Score=55.46 Aligned_cols=181 Identities=15% Similarity=0.154 Sum_probs=105.5
Q ss_pred eEEEeeCCCEEEEEECC------CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCc-----EEEEecCC
Q 005646 358 LDLSWSKNNYLLSASID------KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGK-----VRIWAVLS 426 (686)
Q Consensus 358 ~~l~~s~~~~L~s~s~D------g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~-----V~iwd~~~ 426 (686)
.+++...+...++|+.| .++..||..+.+....-.-...-........++.+.++|+.||. |-.||..+
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC
Confidence 45555554577888888 46788898888755433311111112222227889999999965 66777777
Q ss_pred CcEEEEeccCCcEEEEEE-ccCCCEEEEEecCC------cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 427 CHVVDWVDIRQIVTAVCY-RPDGQGGIVGSMMG------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 427 ~~~~~~~~~~~~V~~v~~-spdg~~l~~gs~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
.+-.....+......... .-+|+..++|+.++ ++..||..++.......+..... -.+++.. ++
T Consensus 406 ~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~-------~~g~a~~--~~ 476 (571)
T KOG4441|consen 406 NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS-------GFGVAVL--NG 476 (571)
T ss_pred CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc-------cceEEEE--CC
Confidence 653332222222222222 23788888888554 47899999988766544332211 1223333 46
Q ss_pred CeEEEEeCCCc-----EEEEeCCcc----ee-----------EcCCCCEEEEEeCCC-----cEEEEeCCCCC
Q 005646 500 SKVMVSCADSQ-----VRILQGPNV----IG-----------KYKDGKHIVSAGEDS-----NVYMWNCIGHE 547 (686)
Q Consensus 500 ~~l~~~s~D~~-----I~iwd~~~~----~~-----------~~~dg~~l~sgs~Dg-----~V~iWd~~~~~ 547 (686)
.++++|+.|+. |..||..+. ++ ..-+++..++|+.|| +|..||..+.+
T Consensus 477 ~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 477 KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 78888887763 666776531 11 111777888888775 45666655543
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=1.1 Score=47.92 Aligned_cols=154 Identities=17% Similarity=0.212 Sum_probs=106.0
Q ss_pred CeeEEEeeCCC-EEEEEEC---CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecCCCcEE
Q 005646 356 EILDLSWSKNN-YLLSASI---DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCHVV 430 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~---Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~~~~~ 430 (686)
.-..+++++++ .+..+.. ++++.+.|..+.+.+....-...-..+++.| +++.++... .++.|.+.|..+..+.
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC-CCCeEEEEecCCCeEEEEeCCCccee
Confidence 44678899988 5544443 7899999999999888865332238999999 888555554 7899999998777666
Q ss_pred E-----EeccCCcEEEEEEccCCCEEEEEecC---CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE
Q 005646 431 D-----WVDIRQIVTAVCYRPDGQGGIVGSMM---GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (686)
Q Consensus 431 ~-----~~~~~~~V~~v~~spdg~~l~~gs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l 502 (686)
. ..........+.++|+|+.+.+.... +.+...|..++....... ..... ....+.+.| ++..+
T Consensus 196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~------~~~~~-~~~~v~~~p-~g~~~ 267 (381)
T COG3391 196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL------PVGSG-APRGVAVDP-AGKAA 267 (381)
T ss_pred ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc------ccccC-CCCceeECC-CCCEE
Confidence 3 23334445678999999977765544 589999988776543210 11111 356688899 55655
Q ss_pred EEE-eCCCcEEEEeCCc
Q 005646 503 MVS-CADSQVRILQGPN 518 (686)
Q Consensus 503 ~~~-s~D~~I~iwd~~~ 518 (686)
.+. +..+.+.+.|..+
T Consensus 268 yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 268 YVANSQGGTVSVIDGAT 284 (381)
T ss_pred EEEecCCCeEEEEeCCC
Confidence 555 5558888888765
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.28 E-value=1.9 Score=45.34 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=53.3
Q ss_pred cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc---CC-cEEEEecCC--CcEEEEe--ccCCcEEEEEEccC
Q 005646 376 TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI---DG-KVRIWAVLS--CHVVDWV--DIRQIVTAVCYRPD 447 (686)
Q Consensus 376 ~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~---Dg-~V~iwd~~~--~~~~~~~--~~~~~V~~v~~spd 447 (686)
.|.--|+.+++....+.....+..++|+|.++.+|+-|-. +. .-|||-+++ ....... .....+..=-|.||
T Consensus 169 ~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~D 248 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPD 248 (386)
T ss_dssp EEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TT
T ss_pred eEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCC
Confidence 4566678888887777788899999999977777777664 22 136675543 2222211 22344666678999
Q ss_pred CCEEEEEec-----CCcEEEEeCCCCeee
Q 005646 448 GQGGIVGSM-----MGDCRFYNVSDNHLE 471 (686)
Q Consensus 448 g~~l~~gs~-----dg~i~iwd~~~~~~~ 471 (686)
|..|.--+. +..|.-+|+.++...
T Consensus 249 G~~i~y~~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 249 GSTIWYDSYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp SS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred CCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence 987655222 335777777776543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.48 Score=47.16 Aligned_cols=166 Identities=10% Similarity=0.171 Sum_probs=110.4
Q ss_pred ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC
Q 005646 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (686)
Q Consensus 351 ~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~ 427 (686)
.|-...|.+|.|+|+. .|++......-.||=...|+.++++. .-.....|.+.- ++.+.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 3455669999999998 88888888888888778899999887 223345566665 6667777667888888877654
Q ss_pred cEE-E---------Eecc-CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEe--eccccCCCCCeEEEEE
Q 005646 428 HVV-D---------WVDI-RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV--HSKKKAPCKRITGFQF 494 (686)
Q Consensus 428 ~~~-~---------~~~~-~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~I~~l~f 494 (686)
..+ . ...+ ......++|.|..+.|.++=...-+.||.+....-.....+.. .....--...|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 211 1 1112 4567889999999999998887778888776332111100000 0000011245889999
Q ss_pred eCCCCCeEEEEeCCCcEEEEeCC
Q 005646 495 LPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 495 sp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
.+..+.+|+.+..++.+.-.|..
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC
Confidence 99777777777777777666643
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.58 Score=52.89 Aligned_cols=104 Identities=12% Similarity=0.051 Sum_probs=62.2
Q ss_pred eeEEEeeCCC-EEEEEECC------------CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEE--
Q 005646 357 ILDLSWSKNN-YLLSASID------------KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRI-- 421 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~D------------g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~i-- 421 (686)
...-.|+|+| .|++.+.. +.+.+.++..+.... .....|..+.|+| |+..++... +|+|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSR-DGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEE
Confidence 6677888886 56555432 223333443333322 3356799999999 999887766 577777
Q ss_pred -EecCCCcEE-----EE-eccCCcEEEEEEccCCCEEEEEecCCcEEEEeC
Q 005646 422 -WAVLSCHVV-----DW-VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 422 -wd~~~~~~~-----~~-~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~ 465 (686)
-....+... .. ......+..+.|.+++.++ ++..++...+|.+
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 443444311 11 1233446889999999854 6555555555544
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.87 E-value=2 Score=42.91 Aligned_cols=165 Identities=11% Similarity=0.176 Sum_probs=104.0
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+.+.+-...|.++.|+|+.+.|++......-.||=..+|+.+..+.....
T Consensus 78 akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~----------------------------- 128 (316)
T COG3204 78 AKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF----------------------------- 128 (316)
T ss_pred ccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-----------------------------
Confidence 444566666799999999999999888888888887777877666543211
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCee----------eeEe
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHC----------LRVF 391 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~----------~~~~ 391 (686)
..--.+.|..+| +.++--.++.+.+..+..... +...
T Consensus 129 --------------------------------~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~ 176 (316)
T COG3204 129 --------------------------------SDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTT 176 (316)
T ss_pred --------------------------------CChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEecccc
Confidence 122345555555 444444566666665544321 1122
Q ss_pred eC-CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc-EEE---Eecc-------CCcEEEEEEcc-CCCEEEEEecCC
Q 005646 392 PH-SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VVD---WVDI-------RQIVTAVCYRP-DGQGGIVGSMMG 458 (686)
Q Consensus 392 ~h-~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-~~~---~~~~-------~~~V~~v~~sp-dg~~l~~gs~dg 458 (686)
.+ +.....++|.| ....|+.+-.-.-++||.+.... .+. ...+ -..|.++.|++ .+..++.+..++
T Consensus 177 ~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr 255 (316)
T COG3204 177 NKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESR 255 (316)
T ss_pred CCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCc
Confidence 23 66788999999 66666666666677887765432 111 1111 12367788887 556677777788
Q ss_pred cEEEEeCCCCe
Q 005646 459 DCRFYNVSDNH 469 (686)
Q Consensus 459 ~i~iwd~~~~~ 469 (686)
.+.-.|....-
T Consensus 256 ~l~Evd~~G~~ 266 (316)
T COG3204 256 RLLEVDLSGEV 266 (316)
T ss_pred eEEEEecCCCe
Confidence 88888876553
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.18 Score=56.83 Aligned_cols=106 Identities=13% Similarity=0.092 Sum_probs=63.5
Q ss_pred CCCCeeEEEeeCCC-EEEEEE------CCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC---------
Q 005646 353 HSGEILDLSWSKNN-YLLSAS------IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID--------- 416 (686)
Q Consensus 353 h~~~V~~l~~s~~~-~L~s~s------~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D--------- 416 (686)
....+...+++|+| .++..- .|..-.||=...+.....+......+.-.|+| ++..+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECC-CCCceEEEecCcceEEEecc
Confidence 33467889999999 544433 24444444332222223333333488899999 87777666532
Q ss_pred ---CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEE
Q 005646 417 ---GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRF 462 (686)
Q Consensus 417 ---g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~i 462 (686)
+.+.+.++..+.... .....|..+.|+|||..++.-. +|.|++
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 233333444333322 3456799999999999988765 466666
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.72 E-value=1.6 Score=44.92 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=61.1
Q ss_pred eCCCEEEEEECCCcEEEEECCCCeeeeEee------CCCCeEEEEEeecCCCEEEEEEc-----------CCcEEEEecC
Q 005646 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVFP------HSNYVTCVHFNPVDDNYFISGSI-----------DGKVRIWAVL 425 (686)
Q Consensus 363 s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~------h~~~V~~v~fsp~~~~~l~sgs~-----------Dg~V~iwd~~ 425 (686)
...+.|+++.. -+.+++..++..+..+. .....+.+...| ++.+.++... -|.|+.+|.
T Consensus 75 d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p- 150 (307)
T COG3386 75 DAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP- 150 (307)
T ss_pred cCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-
Confidence 34446666543 45666666555533332 235567788888 7776665444 133444454
Q ss_pred CCcEEEEe-ccCCcEEEEEEccCCCEEEEEec-CCcEEEEeCCC
Q 005646 426 SCHVVDWV-DIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSD 467 (686)
Q Consensus 426 ~~~~~~~~-~~~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~ 467 (686)
.+..+... ++-..-+.|+||||++.|+.+.. .+.|+-|++..
T Consensus 151 ~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 151 DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 45444433 33555678999999988877755 47788887753
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.21 Score=56.42 Aligned_cols=170 Identities=12% Similarity=0.059 Sum_probs=93.5
Q ss_pred EEEEEECC------CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCC-----cEEEEecCCCcEEEEe
Q 005646 367 YLLSASID------KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG-----KVRIWAVLSCHVVDWV 433 (686)
Q Consensus 367 ~L~s~s~D------g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg-----~V~iwd~~~~~~~~~~ 433 (686)
.++.|+.+ ..+..||..+......-. ....-.+++.. ++.+++.|+.++ .+..||..+.+-....
T Consensus 306 IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 306 IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 55666643 347788888775432222 11111122222 678888888764 4788998876533322
Q ss_pred ccCCcEEEE-EEccCCCEEEEEecCC-----------------------cEEEEeCCCCeeeeeeeEEeeccccCCCCCe
Q 005646 434 DIRQIVTAV-CYRPDGQGGIVGSMMG-----------------------DCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (686)
Q Consensus 434 ~~~~~V~~v-~~spdg~~l~~gs~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I 489 (686)
....+.... +..-+|+..++|+.++ .+..||..+++......+... .. -
T Consensus 384 ~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~------r~-~ 456 (557)
T PHA02713 384 DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG------TI-R 456 (557)
T ss_pred CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc------cc-c
Confidence 222221111 1123678888887653 478899888876543221110 01 1
Q ss_pred EEEEEeCCCCCeEEEEeCC------CcEEEEeCCc--ceeEcC--------------CCCEEEEEeCCC--cEEEEeCCC
Q 005646 490 TGFQFLPQDSSKVMVSCAD------SQVRILQGPN--VIGKYK--------------DGKHIVSAGEDS--NVYMWNCIG 545 (686)
Q Consensus 490 ~~l~fsp~~~~~l~~~s~D------~~I~iwd~~~--~~~~~~--------------dg~~l~sgs~Dg--~V~iWd~~~ 545 (686)
.+++.. ++.+.++|+.+ ..+..||..+ .-...+ +|+..++||.|| .+..||..+
T Consensus 457 ~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 457 PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCccc
Confidence 122222 45677777654 2466788775 111111 888888999888 677777766
Q ss_pred CC
Q 005646 546 HE 547 (686)
Q Consensus 546 ~~ 547 (686)
.+
T Consensus 535 ~~ 536 (557)
T PHA02713 535 YE 536 (557)
T ss_pred cc
Confidence 54
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.68 E-value=4.8 Score=45.12 Aligned_cols=54 Identities=7% Similarity=-0.082 Sum_probs=36.2
Q ss_pred cEEEEecCCCcEEEEec---cC-------CcEEEEEEccCCC---EEEEEecCCcEEEEeCCCCeee
Q 005646 418 KVRIWAVLSCHVVDWVD---IR-------QIVTAVCYRPDGQ---GGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 418 ~V~iwd~~~~~~~~~~~---~~-------~~V~~v~~spdg~---~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
.|.-.|++|++++-.+. |. ....-+.+..+|+ .++.++.+|.+++.|-.+++++
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 46666888888762221 11 1122233335776 7788999999999999998875
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.31 Score=48.07 Aligned_cols=208 Identities=15% Similarity=0.162 Sum_probs=115.7
Q ss_pred eeecCCCccceee-----ccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEE-Eeec
Q 005646 208 RVRLNEEDAMFCS-----KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW-QVVE 281 (686)
Q Consensus 208 ~~s~~~~~l~~g~-----~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW-d~~~ 281 (686)
.|+++|.+|...- .-|.|-|||.... ....-++..|.-.-..|.+.+||+.|+.+. |-|... |.-.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~------fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR 191 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG------FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGR 191 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc------cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCc
Confidence 4677777665432 3367999987632 222356777887888899999999988764 456555 3211
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
- ++++....++.+.+.. ..-.+.+|....-.-+.-.|..++
T Consensus 192 ~----~lNldsMePSlvlld~-----------------------------------atG~liekh~Lp~~l~~lSiRHld 232 (366)
T COG3490 192 T----ELNLDSMEPSLVLLDA-----------------------------------ATGNLIEKHTLPASLRQLSIRHLD 232 (366)
T ss_pred c----ccchhhcCccEEEEec-----------------------------------cccchhhhccCchhhhhcceeeee
Confidence 1 1222222222111110 000111111111113455677788
Q ss_pred eeCCCEEEEEEC-CC-----cEEEEECCCCeeeeEee--------CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC
Q 005646 362 WSKNNYLLSASI-DK-----TVRLWRVGNDHCLRVFP--------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (686)
Q Consensus 362 ~s~~~~L~s~s~-Dg-----~V~iWd~~~~~~~~~~~--------h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~ 427 (686)
.-++|.+..+.. .| --.+=....++.+..+. ..++|-+|+.+-.++-..+|.=..+..-+||..++
T Consensus 233 ~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG 312 (366)
T COG3490 233 IGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATG 312 (366)
T ss_pred eCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCC
Confidence 878774444432 11 12222223444444443 45789999998734444444444556789999999
Q ss_pred cEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeC
Q 005646 428 HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 428 ~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~ 465 (686)
.++........ .-.-+....+++.+.+|.|.+|.-
T Consensus 313 ~vv~~a~l~da---aGva~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 313 AVVSEAALPDA---AGVAAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred cEEeccccccc---ccceeccCceEEecCCceEEeccc
Confidence 99865544332 222345566888889999998853
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.63 E-value=6 Score=45.87 Aligned_cols=317 Identities=12% Similarity=0.079 Sum_probs=149.2
Q ss_pred ecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005646 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (686)
Q Consensus 210 s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~ 289 (686)
..++...+.+..+|.+.-.-..........+....++-+-..-..|+..-++| .|++|+.-|.=++-.+.+-.......
T Consensus 266 ~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng-~lFvGS~~gdSqLi~L~~e~d~gsy~ 344 (1096)
T KOG1897|consen 266 DLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG-VLFVGSRFGDSQLIKLNTEPDVGSYV 344 (1096)
T ss_pred cCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc-eEEEeccCCceeeEEccccCCCCchh
Confidence 34555667777777765554432222222211222333455556677766666 78889887766666554432110000
Q ss_pred cCCCCCcceEEeecCCCC--ceeeeeccccceeEEEeec-cCCceEEEeCCccccccCCCeEEeccCCCCeeEEE--eeC
Q 005646 290 IPEIDPSCIYFTVNHLSE--LKPLFMDKEKISILKSLRR-TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS--WSK 364 (686)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~--~s~ 364 (686)
. .+.-..+-.+. ...+..+..+...+....+ ..++...++... ..+.+.....+.| -..++.+. +.+
T Consensus 345 ~------ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRng-i~I~e~A~i~l~G-ikg~w~lk~~v~~ 416 (1096)
T KOG1897|consen 345 V------ILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNG-IGIDELASIDLPG-IKGMWSLKSMVDE 416 (1096)
T ss_pred h------hhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecc-cccceeeEeecCC-ccceeEeeccccc
Confidence 0 00000000000 0111111112222222221 122222222211 1111222333444 34555665 333
Q ss_pred --CCEEEEEECCCcEEEEECCCC-eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEE
Q 005646 365 --NNYLLSASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTA 441 (686)
Q Consensus 365 --~~~L~s~s~Dg~V~iWd~~~~-~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~ 441 (686)
+.+|+.+-.+.| ++..+... +.............+..+-..++.|+=... ..||+++-. +....|.... .++.
T Consensus 417 ~~d~ylvlsf~~eT-rvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~-~~~~~W~~p~-~~ti 492 (1096)
T KOG1897|consen 417 NYDNYLVLSFISET-RVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA-GLRSEWRPPG-KITI 492 (1096)
T ss_pred cCCcEEEEEeccce-EEEEEccceEEeccccccccCceEEEEccCCceEEEEec-ccEEEEcch-hhhhcccCCC-ceEE
Confidence 234444433333 33334322 111111123344445555445555444443 358888765 4444554433 3444
Q ss_pred EEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC--CCC---eEEEEeCCCcEEEEe-
Q 005646 442 VCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ--DSS---KVMVSCADSQVRILQ- 515 (686)
Q Consensus 442 v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~--~~~---~l~~~s~D~~I~iwd- 515 (686)
.+.+.+...+++++.++.+...++....+.... .+.-...|.|+.++|- +.+ .+++|..+..+.+.-
T Consensus 493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~-------~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~ 565 (1096)
T KOG1897|consen 493 GVVSANASQVVVAGGGLALFYLEIEDGGLREVS-------HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTF 565 (1096)
T ss_pred EEEeecceEEEEecCccEEEEEEeeccceeeee-------eheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEE
Confidence 444445556777777777777777665533211 1122356999999874 334 788888777666542
Q ss_pred CCcc-------------------eeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 516 GPNV-------------------IGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 516 ~~~~-------------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.++. .++..|..+|.++..||.+.-+.++..
T Consensus 566 ~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~ 615 (1096)
T KOG1897|consen 566 LPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDIN 615 (1096)
T ss_pred CCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcc
Confidence 1111 233347899999999999877765543
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.59 E-value=2.1 Score=44.15 Aligned_cols=141 Identities=16% Similarity=0.199 Sum_probs=83.6
Q ss_pred eeEEEeeCCCEEEEEECC----------CcEEEEECC-CCeeeeEee-CCCCeEEEEEeecCCCEEEEEEc-CCcEEEEe
Q 005646 357 ILDLSWSKNNYLLSASID----------KTVRLWRVG-NDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSI-DGKVRIWA 423 (686)
Q Consensus 357 V~~l~~s~~~~L~s~s~D----------g~V~iWd~~-~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd 423 (686)
-+++...|+|.+..+.+. ..-.||-+. .+..++.+. +-..-+.|+|+| +++.|+.+-. .+.|.-|+
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEEEe
Confidence 346666677744444433 112455555 455555554 456668899999 8866666554 47788887
Q ss_pred cCC--Cc------EEEEeccCCcEEEEEEccCCCEEEEEecCC-cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEE
Q 005646 424 VLS--CH------VVDWVDIRQIVTAVCYRPDGQGGIVGSMMG-DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (686)
Q Consensus 424 ~~~--~~------~~~~~~~~~~V~~v~~spdg~~l~~gs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~f 494 (686)
+.. +. .+......+..-.++...+|.+.+++...| .|.+|+.. +++..... -+...+++++|
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~--------lP~~~~t~~~F 262 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK--------LPVKRPTNPAF 262 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE--------CCCCCCccceE
Confidence 752 11 112222345566788888998876555554 89999988 55443221 12245778888
Q ss_pred eCCCCCeEEEEeC
Q 005646 495 LPQDSSKVMVSCA 507 (686)
Q Consensus 495 sp~~~~~l~~~s~ 507 (686)
--.+.+.|.+++.
T Consensus 263 gG~~~~~L~iTs~ 275 (307)
T COG3386 263 GGPDLNTLYITSA 275 (307)
T ss_pred eCCCcCEEEEEec
Confidence 6645555555544
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.56 E-value=2.3 Score=45.16 Aligned_cols=105 Identities=18% Similarity=0.259 Sum_probs=56.4
Q ss_pred CCCcEEEEECCCCeeeeEeeCC---CCeEEEEEeec-CCC-EEEEEEcCCcEEEEec-CCCc-----EEEEec-------
Q 005646 373 IDKTVRLWRVGNDHCLRVFPHS---NYVTCVHFNPV-DDN-YFISGSIDGKVRIWAV-LSCH-----VVDWVD------- 434 (686)
Q Consensus 373 ~Dg~V~iWd~~~~~~~~~~~h~---~~V~~v~fsp~-~~~-~l~sgs~Dg~V~iwd~-~~~~-----~~~~~~------- 434 (686)
...++.+||+.+.+.++++... ..+.-|.|... +.. -|+.+....+|..|-- ..++ ++....
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 3468999999999999999833 34556777541 223 3555555666665543 3332 222211
Q ss_pred ---c-------CCcEEEEEEccCCCEEEEEec-CCcEEEEeCCCCe-eeeeeeEE
Q 005646 435 ---I-------RQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNH-LELDAEIC 477 (686)
Q Consensus 435 ---~-------~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~~-~~~~~~~~ 477 (686)
. ..-|+.|.+|.|.++|.+++. .|.|+.||+.+.. ..+..++.
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~ 354 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVF 354 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEE
Confidence 1 345899999999999988765 8999999998743 33333333
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.75 Score=45.49 Aligned_cols=190 Identities=13% Similarity=0.222 Sum_probs=104.4
Q ss_pred cceeeccce-EEEEEcCCccc-cccccccCceecccCCceEEEEEeeCCCEEEEEeCC-----CcEEEEEeecCeeeeee
Q 005646 216 AMFCSKVQR-VKVYHCKKRSK-ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD-----GVVRLWQVVEDERLTEV 288 (686)
Q Consensus 216 l~~g~~d~~-v~vw~~~~~~~-~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-----g~I~vWd~~~~~~~~~~ 288 (686)
++.+-..|+ ..|+|...... ........+.|.+|. .|||||.+|...-.| |.|-|||...+-
T Consensus 83 vafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~f----- 151 (366)
T COG3490 83 VAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGF----- 151 (366)
T ss_pred EEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEeccccc-----
Confidence 344444444 34566544332 122223345567775 699999998765333 788899986432
Q ss_pred ccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-E
Q 005646 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-Y 367 (686)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~ 367 (686)
..+-++..|.-.-..+.|.+|| .
T Consensus 152 --------------------------------------------------------qrvgE~~t~GiGpHev~lm~DGrt 175 (366)
T COG3490 152 --------------------------------------------------------QRVGEFSTHGIGPHEVTLMADGRT 175 (366)
T ss_pred --------------------------------------------------------ceecccccCCcCcceeEEecCCcE
Confidence 1233444455555667777777 4
Q ss_pred EEEEE------------------CCCcEEEEECCCCeeeeEee-----CCCCeEEEEEeecCCCEEEEEEcCCc-----E
Q 005646 368 LLSAS------------------IDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGK-----V 419 (686)
Q Consensus 368 L~s~s------------------~Dg~V~iWd~~~~~~~~~~~-----h~~~V~~v~fsp~~~~~l~sgs~Dg~-----V 419 (686)
|+.+. +.-.+.+-|..++..+.... +...|..++..+ ++..++-+-..|. -
T Consensus 176 lvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~-dgtvwfgcQy~G~~~d~pp 254 (366)
T COG3490 176 LVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPP 254 (366)
T ss_pred EEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC-CCcEEEEEEeeCCCccCCc
Confidence 43332 22345555655665554332 455677777776 6665554433221 0
Q ss_pred EEEecCCCcEEEEec--------cCCcEEEEEEccCCCEEEEEecCC-cEEEEeCCCCeeeee
Q 005646 420 RIWAVLSCHVVDWVD--------IRQIVTAVCYRPDGQGGIVGSMMG-DCRFYNVSDNHLELD 473 (686)
Q Consensus 420 ~iwd~~~~~~~~~~~--------~~~~V~~v~~spdg~~l~~gs~dg-~i~iwd~~~~~~~~~ 473 (686)
.+=-...++.+...+ ....|-+|+.+.+..+++..+-.| ...+||..++.....
T Consensus 255 Lvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 255 LVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred ceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 000112223333322 234577888887666666666555 467999999887643
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.05 Score=38.56 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=29.6
Q ss_pred CCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
...|.+++|+|...+||.|..||.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 356999999999999999999999999998 554
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.74 Score=49.27 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=65.4
Q ss_pred EEEECCCcEEEEECCCCee--eeEee-----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEE
Q 005646 369 LSASIDKTVRLWRVGNDHC--LRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVT 440 (686)
Q Consensus 369 ~s~s~Dg~V~iWd~~~~~~--~~~~~-----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~ 440 (686)
+.|-.|..|.-||.+-... +..-. ......|.+-. ...+++.||.+|.||+||--..+.. .+.+...+|.
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~ 475 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIK 475 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCcee
Confidence 3455678888899873321 21111 23445555543 5679999999999999998443333 4567788999
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCC
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~ 466 (686)
.|..+.||++|++. .+..+.+-++.
T Consensus 476 hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 476 HVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred eEEeeccCcEEEEe-cccEEEEEEEe
Confidence 99999999988754 56677777754
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.027 Score=53.61 Aligned_cols=101 Identities=21% Similarity=0.167 Sum_probs=61.8
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC-cEEEEe-c-cCCcEEEEE
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVVDWV-D-IRQIVTAVC 443 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~-~~~~~~-~-~~~~V~~v~ 443 (686)
.|..-+.|+.|+-++++..+.... ....+.+..--+....-+++|+.+|.|.+|...-. ...... . .....+.|.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~r--se~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCR--SERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hhccccCCcccccchhhhhhhhhh--hhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 455667788998888765432211 11222223223335678999999999999988722 111111 1 122223344
Q ss_pred EccCCCEEEEEecCCcEEEEeCCCCe
Q 005646 444 YRPDGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 444 ~spdg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
-..++.+..+++.+|.||.|++.-++
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k 135 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNK 135 (238)
T ss_pred cccccceeEEeccCCceeeeccccCc
Confidence 44566788999999999999987655
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.16 E-value=5.9 Score=42.91 Aligned_cols=200 Identities=16% Similarity=0.134 Sum_probs=94.2
Q ss_pred ceEEEEEeeCCCEEEEE-eCC----CcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEe-e
Q 005646 252 SILTMKFSPDGQYLASA-GDD----GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL-R 325 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasg-s~D----g~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 325 (686)
.+..++++|||++||-+ +.. .+|++.|+.+++.+...- ...... .+.|..++...+..- .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~~~~~~-------------~~~W~~d~~~~~y~~~~ 190 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-ENPKFS-------------SVSWSDDGKGFFYTRFD 190 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-EEEESE-------------EEEECTTSSEEEEEECS
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-cccccc-------------eEEEeCCCCEEEEEEeC
Confidence 34467899999998865 333 469999999997654321 100011 122333322221111 1
Q ss_pred ccCCc-----eEEEeCCccccccCCCeEEeccCCCC--eeEEEeeCCC-EEE-EEECCC---cEEEEECCCC-----eee
Q 005646 326 RTSES-----ACVVFPPKVFRILEKPLHEFHGHSGE--ILDLSWSKNN-YLL-SASIDK---TVRLWRVGND-----HCL 388 (686)
Q Consensus 326 ~~~~~-----~~~~~~~~~~~~~~~~~~~l~~h~~~--V~~l~~s~~~-~L~-s~s~Dg---~V~iWd~~~~-----~~~ 388 (686)
..... ...++-.++..-.......+...... ...+..++++ +|+ ...... .+.+.++..+ ...
T Consensus 191 ~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 191 EDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp TTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEE
T ss_pred cccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcE
Confidence 11010 11111111110111112333333322 5678889998 444 344333 4778888764 333
Q ss_pred eEeeCCCCeEEEEEeecCCCEEEEEE---cCCcEEEEecCCCcE----EEEeccCCcEEEEEEccCCCEEEEEec-CC--
Q 005646 389 RVFPHSNYVTCVHFNPVDDNYFISGS---IDGKVRIWAVLSCHV----VDWVDIRQIVTAVCYRPDGQGGIVGSM-MG-- 458 (686)
Q Consensus 389 ~~~~h~~~V~~v~fsp~~~~~l~sgs---~Dg~V~iwd~~~~~~----~~~~~~~~~V~~v~~spdg~~l~~gs~-dg-- 458 (686)
........+....-+. ++.+++... .++.|.-.++.+... ..+..+...+.-..+...+.+|+.... ++
T Consensus 271 ~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~ 349 (414)
T PF02897_consen 271 LLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSS 349 (414)
T ss_dssp EEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEE
T ss_pred EEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCcc
Confidence 4444555555544444 444554443 246777778876652 244555554333344444555555433 33
Q ss_pred cEEEEeCC
Q 005646 459 DCRFYNVS 466 (686)
Q Consensus 459 ~i~iwd~~ 466 (686)
.|+++++.
T Consensus 350 ~l~v~~~~ 357 (414)
T PF02897_consen 350 RLRVYDLD 357 (414)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 48889987
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.35 Score=51.66 Aligned_cols=130 Identities=15% Similarity=0.195 Sum_probs=89.5
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCC-------CEEEEEEcCCcEEEEecCCCc--EEEEec---
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDD-------NYFISGSIDGKVRIWAVLSCH--VVDWVD--- 434 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~-------~~l~sgs~Dg~V~iwd~~~~~--~~~~~~--- 434 (686)
+|.++.....++-.|++.|+.+..+.....|+-+.+.| +. ..-+.|-.|..|.-||.+-.. .+.+..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 55667777889999999999999999555588888888 43 223456678889999998432 222222
Q ss_pred --cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 435 --IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 435 --~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
......|++-..+| ++++|+.+|.||+||--.... . ....+-..+|+.+..+. ++++++.++.
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~A--K------TAlPgLG~~I~hVdvta-dGKwil~Tc~ 491 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRA--K------TALPGLGDAIKHVDVTA-DGKWILATCK 491 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehhhhhhh--h------hcccccCCceeeEEeec-cCcEEEEecc
Confidence 23345666666677 899999999999999632111 1 11233457899999998 6676666654
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.2 Score=44.65 Aligned_cols=148 Identities=19% Similarity=0.143 Sum_probs=85.1
Q ss_pred CeeEEEeeCCC-EEEEEE-CCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEe-cCCCcE---
Q 005646 356 EILDLSWSKNN-YLLSAS-IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA-VLSCHV--- 429 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s-~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd-~~~~~~--- 429 (686)
.+...++++++ .++... .++.-.||-...+...........++.-.|.+ ++...+....+...+++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 68899999999 554444 33444444444444333333445788889999 777777777677777773 333322
Q ss_pred -EEEeccCCcEEEEEEccCCCEEEEEe---cCCcEEEEeCCCCeee-eeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 430 -VDWVDIRQIVTAVCYRPDGQGGIVGS---MMGDCRFYNVSDNHLE-LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 430 -~~~~~~~~~V~~v~~spdg~~l~~gs---~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
+.+......|+++.++|||..++.-. .++.|.+--+....-. .................++.+.|.+ +..+++.
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~~L~V~ 182 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DSTLVVL 182 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-CCEEEEE
Confidence 22332333899999999999988765 3567777655321111 0000001111112346788999998 3344333
Q ss_pred E
Q 005646 505 S 505 (686)
Q Consensus 505 ~ 505 (686)
+
T Consensus 183 ~ 183 (253)
T PF10647_consen 183 G 183 (253)
T ss_pred e
Confidence 3
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.23 Score=57.24 Aligned_cols=97 Identities=18% Similarity=0.241 Sum_probs=72.5
Q ss_pred EEEEEECCCcEEEEECCCCee--eeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe-ccCCc---EE
Q 005646 367 YLLSASIDKTVRLWRVGNDHC--LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIRQI---VT 440 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~--~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~~~~---V~ 440 (686)
.++.|+..|.|...|+...-+ .+-..-.++|++++|+. ++..++.|-.+|.|.+||+..+++...+ .+..+ |.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 788888899999988876522 22223578999999998 9999999999999999999998776443 33333 44
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCC
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~ 466 (686)
.+.+..++..++++...|. +|.+.
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEEE
Confidence 4555667777888877776 56553
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.64 Score=52.47 Aligned_cols=170 Identities=14% Similarity=0.155 Sum_probs=103.9
Q ss_pred EEEEEECC------CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcC------CcEEEEecCCCcEEEE
Q 005646 367 YLLSASID------KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID------GKVRIWAVLSCHVVDW 432 (686)
Q Consensus 367 ~L~s~s~D------g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~D------g~V~iwd~~~~~~~~~ 432 (686)
+++.|+.+ .++..+|..++....... ....-.+++.. ++.++++|+.| .++..||.++.+-...
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 66667666 468889988885544433 44445666665 57889999999 3577888888773332
Q ss_pred eccCCcEEEEEE-ccCCCEEEEEecCCc-----EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 433 VDIRQIVTAVCY-RPDGQGGIVGSMMGD-----CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 433 ~~~~~~V~~v~~-spdg~~l~~gs~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
......-..+.. .-+|...|+|+.||. +-.||..+++......+. ....+.....-++.+.++|+
T Consensus 365 a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~---------~~r~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 365 APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML---------TRRSGHGVAVLGGKLYIIGG 435 (571)
T ss_pred CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC---------cceeeeEEEEECCEEEEEcC
Confidence 222222222222 227888999999875 888898887765433221 12333444443677888888
Q ss_pred CCC------cEEEEeCCcce---------------eEcCCCCEEEEEeCCCc-----EEEEeCCCCC
Q 005646 507 ADS------QVRILQGPNVI---------------GKYKDGKHIVSAGEDSN-----VYMWNCIGHE 547 (686)
Q Consensus 507 ~D~------~I~iwd~~~~~---------------~~~~dg~~l~sgs~Dg~-----V~iWd~~~~~ 547 (686)
.++ ++..||..+.. ...-++...+.||.|+. |..||..+.+
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 654 45667755421 11117788888887763 6667766644
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=94.79 E-value=6.4 Score=41.45 Aligned_cols=234 Identities=12% Similarity=0.104 Sum_probs=94.9
Q ss_pred eeeecCCCccceee-ccceEEEEEcCCccccccccccCceecccC-CceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 207 ERVRLNEEDAMFCS-KVQRVKVYHCKKRSKELSALYKGQEIQAHD-GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 207 ~~~s~~~~~l~~g~-~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.+|..+|+.|+.++ .++.-.+|.++-...+...+.. +. .......++|+.+.|+-......|+--|+.+.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd------g~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD------GPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---------SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc------CCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence 35667787666544 4665555554433333333222 22 1222456678888876665556788888888876
Q ss_pred eeeeccCCCCCcceEEeecCCCC-ceeeeeccccceeEEEee-------ccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSE-LKPLFMDKEKISILKSLR-------RTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
...+..++.-.....+..+.... +..+.........+.... ......++..+ +.......+..-...
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id-----l~tG~~~~v~~~~~w 189 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID-----LKTGERKVVFEDTDW 189 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE-----TTT--EEEEEEESS-
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE-----CCCCceeEEEecCcc
Confidence 55555554322222332222111 111111110000000000 00001111111 112233444445567
Q ss_pred eeEEEeeCCC-E-EEEEEC---CC-cEEEEECCCC-eeeeEe-eC--CCCeEEEEEeecCCCEEEEEE-----cCCcEEE
Q 005646 357 ILDLSWSKNN-Y-LLSASI---DK-TVRLWRVGND-HCLRVF-PH--SNYVTCVHFNPVDDNYFISGS-----IDGKVRI 421 (686)
Q Consensus 357 V~~l~~s~~~-~-L~s~s~---Dg-~V~iWd~~~~-~~~~~~-~h--~~~V~~v~fsp~~~~~l~sgs-----~Dg~V~i 421 (686)
+..+.|+|.. . |.-|-. +. .-|||-+++. ...+.+ .+ ...+..=-|.| +|..|.--+ .+..|.-
T Consensus 190 lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~-DG~~i~y~~~~~~~~~~~i~~ 268 (386)
T PF14583_consen 190 LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP-DGSTIWYDSYTPGGQDFWIAG 268 (386)
T ss_dssp EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T-TSS-EEEEEEETTT--EEEEE
T ss_pred ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC-CCCEEEEEeecCCCCceEEEe
Confidence 7889999987 4 444432 33 2477766532 222222 22 23344456777 666544322 2345777
Q ss_pred EecCCCcEEEEeccCCcEEEEEEccCCCEEEE
Q 005646 422 WAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV 453 (686)
Q Consensus 422 wd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~ 453 (686)
+|+.+++...+.... ....+-.++||++++-
T Consensus 269 ~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 269 YDPDTGERRRLMEMP-WCSHFMSSPDGKLFVG 299 (386)
T ss_dssp E-TTT--EEEEEEE--SEEEEEE-TTSSEEEE
T ss_pred eCCCCCCceEEEeCC-ceeeeEEcCCCCEEEe
Confidence 788887654433333 3456777889988765
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.74 Score=50.06 Aligned_cols=112 Identities=16% Similarity=0.225 Sum_probs=73.4
Q ss_pred CCCCeeEEEeeCCC-----EEEEEECCCcEEEEECC-----CCeeeeEe--e--CCC--CeEEEEEeecCCCEEEEEEcC
Q 005646 353 HSGEILDLSWSKNN-----YLLSASIDKTVRLWRVG-----NDHCLRVF--P--HSN--YVTCVHFNPVDDNYFISGSID 416 (686)
Q Consensus 353 h~~~V~~l~~s~~~-----~L~s~s~Dg~V~iWd~~-----~~~~~~~~--~--h~~--~V~~v~fsp~~~~~l~sgs~D 416 (686)
.-..|..+.|.|-+ .|++....+.|.||.+. +.+.+... . ..- --..+.|+| ....|+.-...
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~ 133 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTAR 133 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecC
Confidence 34568899999863 67777888999999985 22222211 1 111 224567999 77777666555
Q ss_pred CcEEEEecC--CCcEEEEeccCCcEEEEEEccCCCEEEEEecC-CcEEEEeC
Q 005646 417 GKVRIWAVL--SCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM-GDCRFYNV 465 (686)
Q Consensus 417 g~V~iwd~~--~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~d-g~i~iwd~ 465 (686)
..=.+++++ +.++..-+...+.|.|.||.+||+.|+++-.. =.-+|||-
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 444456665 34455555778889999999999998876332 23567764
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.67 E-value=4.7 Score=46.60 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=28.7
Q ss_pred cCCCCeeEEEeeCCC----EEEEEECCCcEEEEECCCC
Q 005646 352 GHSGEILDLSWSKNN----YLLSASIDKTVRLWRVGND 385 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~----~L~s~s~Dg~V~iWd~~~~ 385 (686)
.+...|..+.|+|.+ +|+.-..|+++|+||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 456789999999963 8999999999999999753
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.13 Score=36.52 Aligned_cols=33 Identities=15% Similarity=0.295 Sum_probs=29.8
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCC
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~ 466 (686)
.....|..++|+|...++|.++.+|.|.+|.++
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 445679999999999999999999999999984
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.47 E-value=5.8 Score=39.52 Aligned_cols=134 Identities=9% Similarity=0.098 Sum_probs=84.7
Q ss_pred CCeeEEEeeCCC-EEEEEECCC--cEEEEECCCCeeeeEeeCC--CCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE
Q 005646 355 GEILDLSWSKNN-YLLSASIDK--TVRLWRVGNDHCLRVFPHS--NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s~Dg--~V~iWd~~~~~~~~~~~h~--~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
.....+.|..++ ++-+.+.-| .|+.+|+.+++.+....-. -.--.++.. ++.++...=.++...+||..+.+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 445678887777 666776655 7999999999987776622 233444444 445555556789999999999988
Q ss_pred EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEe
Q 005646 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (686)
Q Consensus 430 ~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fs 495 (686)
+..+.....=..++ .||+.|+.+.....++++|..+-+.....++...+ .....++.+.+.
T Consensus 123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g---~pv~~LNELE~i 183 (264)
T PF05096_consen 123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG---RPVSNLNELEYI 183 (264)
T ss_dssp EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT---EE---EEEEEEE
T ss_pred EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECC---EECCCcEeEEEE
Confidence 87777766667777 57888888888889999998876655443333221 123345556655
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=94.28 E-value=5.4 Score=46.55 Aligned_cols=111 Identities=13% Similarity=0.068 Sum_probs=74.1
Q ss_pred CCEEEEEECCCcEEEEECCCCeeeeEeeCCCCe---------EEEEEee---------------cCCCEEEEEEcCCcEE
Q 005646 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYV---------TCVHFNP---------------VDDNYFISGSIDGKVR 420 (686)
Q Consensus 365 ~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V---------~~v~fsp---------------~~~~~l~sgs~Dg~V~ 420 (686)
++.|+.++.++.|.-.|..+++.+..+.....+ ..+.+.. ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457788888899999999999998888633221 1233321 1345788899999999
Q ss_pred EEecCCCcEEEEeccCCcEE-------------EEEEcc--CCCEEEEEec----------CCcEEEEeCCCCeeeeeee
Q 005646 421 IWAVLSCHVVDWVDIRQIVT-------------AVCYRP--DGQGGIVGSM----------MGDCRFYNVSDNHLELDAE 475 (686)
Q Consensus 421 iwd~~~~~~~~~~~~~~~V~-------------~v~~sp--dg~~l~~gs~----------dg~i~iwd~~~~~~~~~~~ 475 (686)
-.|..+++.+..+...+.|. .+.-.| .+..+++|+. +|.|+-||+.++++.....
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999999885444333221 111222 2345666643 6889999999999876543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.13 Score=49.11 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=66.3
Q ss_pred EEEEEECCCcEEEEECCCCeee-e-EeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccC--CcEEEE
Q 005646 367 YLLSASIDKTVRLWRVGNDHCL-R-VFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR--QIVTAV 442 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~-~-~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~--~~V~~v 442 (686)
.|+.|+.+|.|.+|........ . ...-...|-++--.-.++.+..+++.||.||.|++.-.+.+....+. .++..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 7999999999999988622111 1 11123344444333335668999999999999999988888665543 344555
Q ss_pred EEccCCCEEEEE--ecCCcEEEEeCCC
Q 005646 443 CYRPDGQGGIVG--SMMGDCRFYNVSD 467 (686)
Q Consensus 443 ~~spdg~~l~~g--s~dg~i~iwd~~~ 467 (686)
.....++.++.+ +.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 555555666666 6666777777643
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.21 E-value=4.4 Score=39.14 Aligned_cols=142 Identities=9% Similarity=0.126 Sum_probs=85.0
Q ss_pred CeeEEEeeCCCEEEEEECC----------CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEe--
Q 005646 356 EILDLSWSKNNYLLSASID----------KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA-- 423 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~D----------g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd-- 423 (686)
..++-..+|+|....|.+. |.++.|-.. ++....+..-+--+.++|+.....+.++-+.+-.|.-||
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd 188 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD 188 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecC
Confidence 4456667889855655543 334444322 222222223334467888863344556677788887787
Q ss_pred cCCCcEE------EEecc----CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 424 VLSCHVV------DWVDI----RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 424 ~~~~~~~------~~~~~----~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
..++.+. .+... ....-.+++..+|++.++.-..|+|...|..++++.++..+. ...|++.+
T Consensus 189 ~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--------t~qitscc 260 (310)
T KOG4499|consen 189 CPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--------TPQITSCC 260 (310)
T ss_pred CCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--------CCceEEEE
Confidence 5565432 22110 111234566778888888888899999999999987754432 35699999
Q ss_pred EeCCCCCeEEEEe
Q 005646 494 FLPQDSSKVMVSC 506 (686)
Q Consensus 494 fsp~~~~~l~~~s 506 (686)
|--.+-..+.+++
T Consensus 261 FgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 261 FGGKNLDILYVTT 273 (310)
T ss_pred ecCCCccEEEEEe
Confidence 9764434444443
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.26 Score=57.05 Aligned_cols=136 Identities=15% Similarity=0.099 Sum_probs=92.1
Q ss_pred CeeEEEeeCCC---EEEEEECCCcEEEEECCCCe--------eeeEe----eCCCCeEEEEEeecCCCEEEEEEcCCcEE
Q 005646 356 EILDLSWSKNN---YLLSASIDKTVRLWRVGNDH--------CLRVF----PHSNYVTCVHFNPVDDNYFISGSIDGKVR 420 (686)
Q Consensus 356 ~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~~~--------~~~~~----~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~ 420 (686)
.|..+...+|+ .++..+.+-.|..||+++-. +++.- .....+.++.|+|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45556666665 34445556688999987432 11111 14466788999996666778888899999
Q ss_pred EEecCCCc-EEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 421 IWAVLSCH-VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 421 iwd~~~~~-~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
+..+.-.. .+........+++++|+|.|+.+++|-..|++.-|...-.. .. .++........+|.++.|..
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei---k~--~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI---KS--EIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccce---ee--cccCCCcCCCcceeEEEEec
Confidence 98776433 33445667789999999999999999999999998754321 11 11111222257799999987
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=93.91 E-value=11 Score=40.59 Aligned_cols=57 Identities=12% Similarity=0.237 Sum_probs=44.0
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEec
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~ 424 (686)
+|..-+.||++.+++-+.-.....+..---...+.|.| ..+.|++++.+..|.-|..
T Consensus 147 ~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 147 FICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKY 203 (418)
T ss_pred EEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecH
Confidence 88899999999999987766555555333334577888 7788999998989988865
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.33 Score=56.06 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=68.7
Q ss_pred CCCEEEEEEcCCcEEEEecCCCcE--EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecccc
Q 005646 406 DDNYFISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (686)
Q Consensus 406 ~~~~l~sgs~Dg~V~iwd~~~~~~--~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 483 (686)
-...++.|+..|.|-..|+...-. ..-.....+|++++|+.+|+.++.|-.+|.|.+||+..++....... ..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e-----~~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE-----HG 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee-----cC
Confidence 456788889899999999876422 22223467899999999999999999999999999998776542211 11
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
++...|..+.+.. +...++++...|. +|.
T Consensus 173 ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 173 APVTGVIFVGRTS-QNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred CccceEEEEEEeC-CCcEEEEccCCCc--eEE
Confidence 2222233333444 3446666666665 554
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.68 E-value=5 Score=42.47 Aligned_cols=96 Identities=9% Similarity=0.040 Sum_probs=56.0
Q ss_pred EEEee-CCC--EEEEEECCCcEEEEE--CCCCeeeeEee-CCCCeEE-EEEeecCCCEEEEEEcC----CcEEEEecC-C
Q 005646 359 DLSWS-KNN--YLLSASIDKTVRLWR--VGNDHCLRVFP-HSNYVTC-VHFNPVDDNYFISGSID----GKVRIWAVL-S 426 (686)
Q Consensus 359 ~l~~s-~~~--~L~s~s~Dg~V~iWd--~~~~~~~~~~~-h~~~V~~-v~fsp~~~~~l~sgs~D----g~V~iwd~~-~ 426 (686)
...+. +++ +|.....||.-+|+- ...+... .+. ..-.|+. +.+++..+.+++++..+ ..|..-++. .
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 44443 555 666666887666554 4444433 333 5556755 67777444555566653 356666777 5
Q ss_pred CcEEEEeccCCcEEEEEEccCCCEEEEEe
Q 005646 427 CHVVDWVDIRQIVTAVCYRPDGQGGIVGS 455 (686)
Q Consensus 427 ~~~~~~~~~~~~V~~v~~spdg~~l~~gs 455 (686)
+....+......-..+.|+|+|++++..+
T Consensus 318 ~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 318 GEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 66655554433336899999999988654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=93.53 E-value=2.9 Score=36.83 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=76.2
Q ss_pred EeeCCC-EEEEEECCCcEEEEECCC--------CeeeeEeeCCCCeEEEEEeec----CCCEEEEEEcCCcEEEEecCCC
Q 005646 361 SWSKNN-YLLSASIDKTVRLWRVGN--------DHCLRVFPHSNYVTCVHFNPV----DDNYFISGSIDGKVRIWAVLSC 427 (686)
Q Consensus 361 ~~s~~~-~L~s~s~Dg~V~iWd~~~--------~~~~~~~~h~~~V~~v~fsp~----~~~~l~sgs~Dg~V~iwd~~~~ 427 (686)
.|.... .|+.++.-+.|.|++... ...+..+.-+..|++|+-.|- ..+.|+.|+. ..|..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence 343444 688888889999998763 345677778888999977662 3567777774 57999999999
Q ss_pred cEEEEeccCCcEEEEEEcc----CCCEEEEEecCCcEEEEeCCCCe
Q 005646 428 HVVDWVDIRQIVTAVCYRP----DGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 428 ~~~~~~~~~~~V~~v~~sp----dg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
.-+.+......|.++.+-. +...+++| .+..|.=||.....
T Consensus 84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e 128 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNE 128 (136)
T ss_pred chhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcE
Confidence 8888888888899888754 23345554 45566667765544
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.53 E-value=19 Score=42.05 Aligned_cols=184 Identities=14% Similarity=0.066 Sum_probs=106.9
Q ss_pred CeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeec--CCC---EEEEEEcCCcEEEE-ecCC
Q 005646 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPV--DDN---YFISGSIDGKVRIW-AVLS 426 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~--~~~---~l~sgs~Dg~V~iw-d~~~ 426 (686)
.++..+.+.+. .++.++.++.+...++..+....... ....|.|+.++|. +.+ +++.|..+..+.+. -..+
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd 568 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD 568 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence 33444444444 66667767777777776665333333 4678999999984 334 78888887765554 3334
Q ss_pred CcEEEEe--c---cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCe
Q 005646 427 CHVVDWV--D---IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (686)
Q Consensus 427 ~~~~~~~--~---~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~ 501 (686)
...+... . .+..|.-.++--|..+|.++..||.+.-|-+.....+.... .+..-...++.=-.|+. .+..
T Consensus 569 ~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~----Kk~~lGt~P~~Lr~f~s-k~~t 643 (1096)
T KOG1897|consen 569 LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDR----KKVTLGTQPISLRTFSS-KSRT 643 (1096)
T ss_pred cceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccc----cccccCCCCcEEEEEee-CCce
Confidence 4333222 2 22334455566678899999999998877765544332111 11111234555556666 5555
Q ss_pred EEEEeCCCcEEEEeCCcceeEcC----------------CCCEEEEEeCCCcEEEEeCCC
Q 005646 502 VMVSCADSQVRILQGPNVIGKYK----------------DGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 502 l~~~s~D~~I~iwd~~~~~~~~~----------------dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
-+.+..|.-.-+|....-+.++| -...|+++.. +.+++-.++.
T Consensus 644 ~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~ 702 (1096)
T KOG1897|consen 644 AVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANG-GALTIGTIDE 702 (1096)
T ss_pred EEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecC-CceEEEEecc
Confidence 56666666666665554444444 2345665543 4577777665
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=93.53 E-value=6.9 Score=42.02 Aligned_cols=94 Identities=12% Similarity=0.099 Sum_probs=55.2
Q ss_pred eeeecCCCccceeeccceEEE---EEcCCcc--ccccccccCceecccC-CceEEEEEee-----------CCCEEEEEe
Q 005646 207 ERVRLNEEDAMFCSKVQRVKV---YHCKKRS--KELSALYKGQEIQAHD-GSILTMKFSP-----------DGQYLASAG 269 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~v---w~~~~~~--~~~~~~~~~~~l~~H~-~~I~~l~fsp-----------dg~~Lasgs 269 (686)
.+++++++.++.+..+.-+.+ |+..... .......-...+..-. ..|+++.+-| |...++.|-
T Consensus 7 isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ 86 (415)
T PF14655_consen 7 ISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGT 86 (415)
T ss_pred EEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEe
Confidence 467788888888877776655 4332111 1111111111222211 5677777654 356899999
Q ss_pred CCCcEEEEEeecCeeeeeeccCCCCCcceEEe
Q 005646 270 DDGVVRLWQVVEDERLTEVDIPEIDPSCIYFT 301 (686)
Q Consensus 270 ~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~ 301 (686)
.+|.|++|.. +|..+....+++.++..+.+.
T Consensus 87 ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 87 SSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred cccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 9999999985 666666666665555544443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=4.8 Score=45.51 Aligned_cols=140 Identities=13% Similarity=0.046 Sum_probs=73.5
Q ss_pred EEEEEECCC-----cEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCC----------------------
Q 005646 367 YLLSASIDK-----TVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG---------------------- 417 (686)
Q Consensus 367 ~L~s~s~Dg-----~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg---------------------- 417 (686)
..+.|+.++ +|..||..+.+....-. +...-.+++. - ++.+.+.|+.++
T Consensus 354 IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~-~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (557)
T PHA02713 354 IYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV-L-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSS 431 (557)
T ss_pred EEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE-E-CCEEEEEeCCCccccccccccccccccccccccc
Confidence 555666543 48889988775443222 2111112221 1 677888887653
Q ss_pred -cEEEEecCCCcEEEEeccCCc-EEEEEEccCCCEEEEEecCC------cEEEEeCCC-CeeeeeeeEEeeccccCCCCC
Q 005646 418 -KVRIWAVLSCHVVDWVDIRQI-VTAVCYRPDGQGGIVGSMMG------DCRFYNVSD-NHLELDAEICVHSKKKAPCKR 488 (686)
Q Consensus 418 -~V~iwd~~~~~~~~~~~~~~~-V~~v~~spdg~~l~~gs~dg------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~ 488 (686)
.|..||..+.+-........+ ..+-+..-+|+..++|+.++ .+..||..+ ++......+.. +..
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~------~r~- 504 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES------RLS- 504 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc------ccc-
Confidence 467788777653322221111 11112233677777787642 467899987 56554332211 111
Q ss_pred eEEEEEeCCCCCeEEEEeCCC--cEEEEeCC
Q 005646 489 ITGFQFLPQDSSKVMVSCADS--QVRILQGP 517 (686)
Q Consensus 489 I~~l~fsp~~~~~l~~~s~D~--~I~iwd~~ 517 (686)
..+++.. ++.+.++|+.|+ .+..||..
T Consensus 505 ~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 505 ALHTILH--DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred cceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence 1222222 568888888887 55555554
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.013 Score=65.59 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=31.4
Q ss_pred cceEEEEEcCCccccccccccCceecccCCceEEEEEe---eCCCEEEEEeCCCcEEEEEeecC
Q 005646 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFS---PDGQYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fs---pdg~~Lasgs~Dg~I~vWd~~~~ 282 (686)
-|...||+++-...++..-........-...+.-+.|. ++.-|+..+-.++.|++-.+.+.
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra 215 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA 215 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechH
Confidence 45677888764333322221122222222333444444 35567777777788887776543
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.87 Score=53.03 Aligned_cols=138 Identities=8% Similarity=-0.021 Sum_probs=88.2
Q ss_pred CcEEEEEEccCCCEEEEEec--CCcEEEEeCCCCeeee---eeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 437 QIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLEL---DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~--dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
-++..+...+|+...++... +-.|..||+..-.... ...++.+........-..++.|.|.-....++...|..|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 44566666778776555433 3379999987543322 122222222222334467788999666778888899999
Q ss_pred EEEeC---------------CcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCC
Q 005646 512 RILQG---------------PNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGL 576 (686)
Q Consensus 512 ~iwd~---------------~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~ 576 (686)
++..+ .++++|+|.|+.++.|-..|++.-|...-... +.+..........+..+.|-++
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik------~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK------SEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee------ecccCCCcCCCcceeEEEEecc
Confidence 98753 35789999999999999999999998765431 1111111111345778888877
Q ss_pred cCCC
Q 005646 577 KCGN 580 (686)
Q Consensus 577 ~~~~ 580 (686)
+.|-
T Consensus 255 ~efl 258 (1405)
T KOG3630|consen 255 QEFL 258 (1405)
T ss_pred eeEE
Confidence 6544
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=92.73 E-value=9.9 Score=42.64 Aligned_cols=106 Identities=15% Similarity=0.100 Sum_probs=69.2
Q ss_pred CCEEEEEECCCcEEEEECCCCeeeeEeeCCC--CeEE----------EEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE
Q 005646 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSN--YVTC----------VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 365 ~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~--~V~~----------v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~ 432 (686)
++.|+.++.++.|.-.|..+++.+..+.... .+.. +++ .+..++.++.|+.|.-.|..+++++-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 4577778888899999999999988876321 1211 222 235677888899999999999998743
Q ss_pred eccCCc--EEEEEEcc---CCCEEEEEec------CCcEEEEeCCCCeeeeee
Q 005646 433 VDIRQI--VTAVCYRP---DGQGGIVGSM------MGDCRFYNVSDNHLELDA 474 (686)
Q Consensus 433 ~~~~~~--V~~v~~sp---dg~~l~~gs~------dg~i~iwd~~~~~~~~~~ 474 (686)
...... -..+.-+| ++ .++++.. +|.|+-+|..+++.....
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 332110 00111122 44 4555542 689999999999876543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=92.67 E-value=11 Score=38.84 Aligned_cols=167 Identities=14% Similarity=0.201 Sum_probs=0.0
Q ss_pred EEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCC
Q 005646 226 KVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305 (686)
Q Consensus 226 ~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (686)
.||............... -.+.+..+..++||+|++++..-....-|+--...
T Consensus 125 ~iy~T~DgG~tW~~~~~~-----~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---------------------- 177 (302)
T PF14870_consen 125 AIYRTTDGGKTWQAVVSE-----TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---------------------- 177 (302)
T ss_dssp -EEEESSTTSSEEEEE-S---------EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----------------------
T ss_pred cEEEeCCCCCCeeEcccC-----CcceeEeEEECCCCcEEEEECcccEEEEecCCCcc----------------------
Q ss_pred CCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEE-CCC
Q 005646 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWR-VGN 384 (686)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd-~~~ 384 (686)
-...-..-...|..|.|.|++.|......+.|+.=+ ...
T Consensus 178 ----------------------------------------w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 178 ----------------------------------------WQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDD 217 (302)
T ss_dssp -----------------------------------------EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTE
T ss_pred ----------------------------------------ceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCC
Q ss_pred CeeeeE----eeCCCC-eEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc----CCcEEEEEEccCCCEEEEEe
Q 005646 385 DHCLRV----FPHSNY-VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI----RQIVTAVCYRPDGQGGIVGS 455 (686)
Q Consensus 385 ~~~~~~----~~h~~~-V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~----~~~V~~v~~spdg~~l~~gs 455 (686)
...... +...+. +..++|.+ +...+++|+.. .-+.....++.-..... ...++.|.|.++.+.++.|
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg~G--~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG- 293 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGGSG--TLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG- 293 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESS-SS-EEEEESTT---EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--
T ss_pred ccccccccCCcccCceeeEEEEecC-CCCEEEEeCCc--cEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-
Q ss_pred cCCcEEEE
Q 005646 456 MMGDCRFY 463 (686)
Q Consensus 456 ~dg~i~iw 463 (686)
.+|.+.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=92.61 E-value=4.9 Score=43.24 Aligned_cols=136 Identities=13% Similarity=0.091 Sum_probs=87.2
Q ss_pred CCCEEEEEEcCCcEEEEecCCCc-----EEEEeccCCcEEEEEEcc-----CCCEEEEEecCCcEEEEeCCCCeee----
Q 005646 406 DDNYFISGSIDGKVRIWAVLSCH-----VVDWVDIRQIVTAVCYRP-----DGQGGIVGSMMGDCRFYNVSDNHLE---- 471 (686)
Q Consensus 406 ~~~~l~sgs~Dg~V~iwd~~~~~-----~~~~~~~~~~V~~v~~sp-----dg~~l~~gs~dg~i~iwd~~~~~~~---- 471 (686)
+.+.+++|+..|.+|||+..... ++-......+|..+..-+ +...||+ =.-..+.||.+....-.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 45799999999999999986543 445556778888887653 2335555 46678888887321100
Q ss_pred --eeeeEEeeccccCCCCCeEEEEEeCC---C-CCeEEEEeCCCcEEEEeCCc--------------ceeEcCCCCEEEE
Q 005646 472 --LDAEICVHSKKKAPCKRITGFQFLPQ---D-SSKVMVSCADSQVRILQGPN--------------VIGKYKDGKHIVS 531 (686)
Q Consensus 472 --~~~~~~~~~~~~~~~~~I~~l~fsp~---~-~~~l~~~s~D~~I~iwd~~~--------------~~~~~~dg~~l~s 531 (686)
........... ......+..-|- . ...+.+-+-||.+.+++... .+.+.+.-..|++
T Consensus 115 ~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 115 NQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred cEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEE
Confidence 11111111111 111233333332 2 46889999999999998543 3566678889999
Q ss_pred EeCCCcEEEEeCCC
Q 005646 532 AGEDSNVYMWNCIG 545 (686)
Q Consensus 532 gs~Dg~V~iWd~~~ 545 (686)
++.+..|.-|....
T Consensus 192 ~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 192 ASSSWTLECYKYQD 205 (418)
T ss_pred ecCceeEEEecHHH
Confidence 99999999998744
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.20 E-value=7.4 Score=37.36 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=42.4
Q ss_pred cceeeecCC-CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC
Q 005646 205 EGERVRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD 270 (686)
Q Consensus 205 ~~~~~s~~~-~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 270 (686)
|...+...+ +.|+.+.....|.+|++.....++.. .|. --+.|..|.++..|+||+|-=+
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~-----~F~-Tv~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLC-----TFS-TVGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeE-----EEc-chhheeEEEeccccceEEEEEe
Confidence 556666667 77777788889999998843333221 222 2378999999999999999643
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.20 E-value=5.3 Score=45.02 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=55.2
Q ss_pred EEEEEECC-----CcEEEEECCCCeeeeEe--eCCCCeEEEEEeecCCCEEEEEEcC------CcEEEEecCCCcEEEEe
Q 005646 367 YLLSASID-----KTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPVDDNYFISGSID------GKVRIWAVLSCHVVDWV 433 (686)
Q Consensus 367 ~L~s~s~D-----g~V~iWd~~~~~~~~~~--~h~~~V~~v~fsp~~~~~l~sgs~D------g~V~iwd~~~~~~~~~~ 433 (686)
.++.|+.+ ..+..||..+++....- .+...-.+++.. ++.+++.|+.+ ..+..||..+.+-....
T Consensus 345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 55556654 35778888776543322 222211222222 67777777742 35788998876533222
Q ss_pred ccCCcE-EEEEEccCCCEEEEEecCC--------cEEEEeCCCCeeee
Q 005646 434 DIRQIV-TAVCYRPDGQGGIVGSMMG--------DCRFYNVSDNHLEL 472 (686)
Q Consensus 434 ~~~~~V-~~v~~spdg~~l~~gs~dg--------~i~iwd~~~~~~~~ 472 (686)
....+. ...+...+++.++.|+.++ .+.+||..+++...
T Consensus 423 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~ 470 (534)
T PHA03098 423 PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE 470 (534)
T ss_pred CCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceee
Confidence 211111 1112223666777776432 38889988776543
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.00 E-value=4 Score=43.52 Aligned_cols=98 Identities=11% Similarity=0.021 Sum_probs=56.0
Q ss_pred CeeEEEeeCCCEEEEEECCCcEEEEECCCC-----e---eeeEeeC-----CCCeEEEEEeecCCCEEEEEEcC------
Q 005646 356 EILDLSWSKNNYLLSASIDKTVRLWRVGND-----H---CLRVFPH-----SNYVTCVHFNPVDDNYFISGSID------ 416 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~-----~---~~~~~~h-----~~~V~~v~fsp~~~~~l~sgs~D------ 416 (686)
....|++.+++ |+.+......++.|.... + .+..+.. ......++|.| ++.+.++-+..
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec
Confidence 45778888888 444555544444454321 1 1122221 34477899999 88876655521
Q ss_pred -------------CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEe
Q 005646 417 -------------GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS 455 (686)
Q Consensus 417 -------------g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs 455 (686)
|.|.-++..+++...+...-.....++|+|+|+++++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 445555555554433322233356899999998876643
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.60 E-value=8.6 Score=40.77 Aligned_cols=153 Identities=15% Similarity=0.283 Sum_probs=92.9
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
+.++.+...|.+.=|-.+....+....+. ...+++|.+|+||+|.+.||.--.|++|.+.+....+.....
T Consensus 34 NkqlfavrSggatgvvvkgpndDVpiSfd----m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~----- 104 (657)
T KOG2377|consen 34 NKQLFAVRSGGATGVVVKGPNDDVPISFD----MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY----- 104 (657)
T ss_pred cceEEEEecCCeeEEEEeCCCCCCCceee----ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH-----
Confidence 55666667777777776655443322211 235679999999999999999999999999988544321111
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEEC
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASI 373 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~ 373 (686)
.++.+..+..|....|+.+..+|..+.
T Consensus 105 -----------------------------------------------------~~~ck~k~~~IlGF~W~~s~e~A~i~~ 131 (657)
T KOG2377|consen 105 -----------------------------------------------------TQECKTKNANILGFCWTSSTEIAFITD 131 (657)
T ss_pred -----------------------------------------------------HHHhccCcceeEEEEEecCeeEEEEec
Confidence 122233445688888887665555443
Q ss_pred CCcEEEEECCCC-eeeeEee-CCCCeEEEEEeecCCCEEEEE-E-cCCcEEEEecCCCcEE
Q 005646 374 DKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISG-S-IDGKVRIWAVLSCHVV 430 (686)
Q Consensus 374 Dg~V~iWd~~~~-~~~~~~~-h~~~V~~v~fsp~~~~~l~sg-s-~Dg~V~iwd~~~~~~~ 430 (686)
. -+-+|.+... +.++... |...|+--.|.| +.+.++-+ + ...++.=+-++++.+.
T Consensus 132 ~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v~LL~t~~~~n~lnpf~~~~~~v~ 190 (657)
T KOG2377|consen 132 Q-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAVILLSTTVLENVLNPFHFRAGTMS 190 (657)
T ss_pred C-CeEEEEEchhhhhhhhhhhcccCccEEEEcc-ccceEeeeccccccccccEEEeeceee
Confidence 3 3566655432 2333333 788888888888 55543333 3 3444444555554433
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.14 Score=57.80 Aligned_cols=121 Identities=13% Similarity=0.139 Sum_probs=69.9
Q ss_pred CCcEEEEecCCCcE--EEEeccCCcEEEEEEcc----CCCEEEEEecCCcEEEEeCC--CCeeeeeeeEEeeccccCCCC
Q 005646 416 DGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRP----DGQGGIVGSMMGDCRFYNVS--DNHLELDAEICVHSKKKAPCK 487 (686)
Q Consensus 416 Dg~V~iwd~~~~~~--~~~~~~~~~V~~v~~sp----dg~~l~~gs~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~ 487 (686)
.+.+|+-+..+... .-..+..+.|-.+.|-. .+. -.-|.+.|||+. .++++....+....... .
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~-----~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~g---s 181 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR-----RLVGELFVYDVDVLQGEIQPQLEVTPITPYG---S 181 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH-----HHhhhhheeehHhhccccccceEEeecCcCC---C
Confidence 34566655544322 11224455666666643 333 233678899876 34444433333333322 2
Q ss_pred CeEEEEEeCC--CCCeEEEEeCCCcEEEEeCCc-------------------------ceeEcCCCCEEEEEeCCCcEEE
Q 005646 488 RITGFQFLPQ--DSSKVMVSCADSQVRILQGPN-------------------------VIGKYKDGKHIVSAGEDSNVYM 540 (686)
Q Consensus 488 ~I~~l~fsp~--~~~~l~~~s~D~~I~iwd~~~-------------------------~~~~~~dg~~l~sgs~Dg~V~i 540 (686)
.+.-+.|+|. +..++..+-.++.|++.+... .-..+|||..++.+..||.+++
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF 261 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence 3344555553 445666666788888876431 1236779999999999999999
Q ss_pred EeCC
Q 005646 541 WNCI 544 (686)
Q Consensus 541 Wd~~ 544 (686)
|.+.
T Consensus 262 ~Qiy 265 (1283)
T KOG1916|consen 262 YQIY 265 (1283)
T ss_pred eeee
Confidence 9875
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=91.14 E-value=37 Score=39.86 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=46.6
Q ss_pred CEEEEEECCCcEEEEECCCCeeeeEeeCCCCeE-------------EEEEee-cCCCEEEEEEc----------CCcEEE
Q 005646 366 NYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVT-------------CVHFNP-VDDNYFISGSI----------DGKVRI 421 (686)
Q Consensus 366 ~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~-------------~v~fsp-~~~~~l~sgs~----------Dg~V~i 421 (686)
+.++.++.|+.|.-.|..+|+.+..|..++.|. .+.-.| ..++.++.|+. +|.|+-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 378888899999999999999998876544331 111111 12456666653 688999
Q ss_pred EecCCCcEEE
Q 005646 422 WAVLSCHVVD 431 (686)
Q Consensus 422 wd~~~~~~~~ 431 (686)
+|+++++++-
T Consensus 341 ~Da~TGkl~W 350 (764)
T TIGR03074 341 FDVNTGALVW 350 (764)
T ss_pred EECCCCcEee
Confidence 9999999873
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.02 E-value=8 Score=42.87 Aligned_cols=104 Identities=7% Similarity=0.069 Sum_probs=59.0
Q ss_pred EEEEEECC-----CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcC--CcEEEEecCCCcEEEEeccCC
Q 005646 367 YLLSASID-----KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID--GKVRIWAVLSCHVVDWVDIRQ 437 (686)
Q Consensus 367 ~L~s~s~D-----g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~D--g~V~iwd~~~~~~~~~~~~~~ 437 (686)
.++.|+.+ .++..||..+++....-. ....-.+++. - ++.+.+.|+.+ ..+..||..+.+-........
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-E-CCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 56667654 357788888876544332 1111112222 2 67788888864 357788877664333333322
Q ss_pred cEEE-EEEccCCCEEEEEecCC---cEEEEeCCCCeeee
Q 005646 438 IVTA-VCYRPDGQGGIVGSMMG---DCRFYNVSDNHLEL 472 (686)
Q Consensus 438 ~V~~-v~~spdg~~l~~gs~dg---~i~iwd~~~~~~~~ 472 (686)
+... .+..-+|+..++|+.++ .+..||..++....
T Consensus 352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~ 390 (480)
T PHA02790 352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF 390 (480)
T ss_pred CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe
Confidence 2211 22233778888887654 47789988877654
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=90.76 E-value=27 Score=37.72 Aligned_cols=247 Identities=11% Similarity=0.057 Sum_probs=116.0
Q ss_pred eeeecCCCcccee-----eccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCC---------
Q 005646 207 ERVRLNEEDAMFC-----SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG--------- 272 (686)
Q Consensus 207 ~~~s~~~~~l~~g-----~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--------- 272 (686)
..++++++++|.+ +....++|+|+.+... +.. .+..- .-..+.|.+|++.|+....|.
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~-l~d-----~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF-LPD-----GIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE-EEE-----EEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcC-cCC-----ccccc--ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 4567788877654 3334699999876522 111 11111 122399999988776665443
Q ss_pred --cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCC-ceeeeeccccceeEEEeeccCC-ceEEEeCCccccccCCCeE
Q 005646 273 --VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSE-LKPLFMDKEKISILKSLRRTSE-SACVVFPPKVFRILEKPLH 348 (686)
Q Consensus 273 --~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 348 (686)
.|+.|.+.+...-..+ .|....... ...+..+.++...+........ ..+.+.+............
T Consensus 201 ~~~v~~~~~gt~~~~d~l----------vfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDEL----------VFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp CEEEEEEETTS-GGG-EE----------EEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEE
T ss_pred CcEEEEEECCCChHhCee----------EEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcE
Confidence 2666666554422111 111111111 2233444444444443333333 3444433332101112233
Q ss_pred EeccCCCCee-EEEeeCCC-EEEEEE---CCCcEEEEECCCCee---e-eEeeCCCCeEEEEEeecCCCEEEEEEcCC--
Q 005646 349 EFHGHSGEIL-DLSWSKNN-YLLSAS---IDKTVRLWRVGNDHC---L-RVFPHSNYVTCVHFNPVDDNYFISGSIDG-- 417 (686)
Q Consensus 349 ~l~~h~~~V~-~l~~s~~~-~L~s~s---~Dg~V~iWd~~~~~~---~-~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg-- 417 (686)
.+..+...+. .+... .+ +++... ..+.|...++..... . ..+.+...+.-..+....+.+++....++
T Consensus 271 ~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~ 349 (414)
T PF02897_consen 271 LLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSS 349 (414)
T ss_dssp EEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEE
T ss_pred EEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCcc
Confidence 3333333343 34333 44 333222 235666677776652 2 33446654433444442344455555554
Q ss_pred cEEEEecC-CCcEEEEec-cCCcEEEEEEccCCCEEEEEec----CCcEEEEeCCCCeeee
Q 005646 418 KVRIWAVL-SCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSM----MGDCRFYNVSDNHLEL 472 (686)
Q Consensus 418 ~V~iwd~~-~~~~~~~~~-~~~~V~~v~~spdg~~l~~gs~----dg~i~iwd~~~~~~~~ 472 (686)
.|+++++. +........ ..+.|..+...+++..+..... -++++.||+.+++...
T Consensus 350 ~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 350 RLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 48889998 444433332 2334566666666665544322 3578889998887654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.69 E-value=14 Score=35.87 Aligned_cols=89 Identities=11% Similarity=0.222 Sum_probs=60.5
Q ss_pred eeEEEeeCCC--EEEEEECCCcEEEEE--CCCCee-----eeEeeC-----CCCeEEEEEeecCCCEEEEEEcCCcEEEE
Q 005646 357 ILDLSWSKNN--YLLSASIDKTVRLWR--VGNDHC-----LRVFPH-----SNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (686)
Q Consensus 357 V~~l~~s~~~--~L~s~s~Dg~V~iWd--~~~~~~-----~~~~~h-----~~~V~~v~fsp~~~~~l~sgs~Dg~V~iw 422 (686)
-+.|+|+.+. +.++-+.+-+|.-|| ..+|.. +..+.. .-..-.++... .++++++.-..++|...
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKV 238 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEE
Confidence 3567887666 666777788887787 444432 222221 11123344455 78999999999999999
Q ss_pred ecCCCcEEEEecc-CCcEEEEEEcc
Q 005646 423 AVLSCHVVDWVDI-RQIVTAVCYRP 446 (686)
Q Consensus 423 d~~~~~~~~~~~~-~~~V~~v~~sp 446 (686)
|..+++++..+.. ...|+++||--
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecC
Confidence 9999998855544 56799999954
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=90.60 E-value=12 Score=42.84 Aligned_cols=109 Identities=10% Similarity=0.056 Sum_probs=75.5
Q ss_pred CeeEEEeeCCC---EEEEEECCCcEEEEECCC-------C-------------eeeeEeeCCCCeEEEEEe--ecCCCEE
Q 005646 356 EILDLSWSKNN---YLLSASIDKTVRLWRVGN-------D-------------HCLRVFPHSNYVTCVHFN--PVDDNYF 410 (686)
Q Consensus 356 ~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~-------~-------------~~~~~~~h~~~V~~v~fs--p~~~~~l 410 (686)
.|+.|....=| .|+.+..||.|.+|.+++ . ++...+.....++.++++ . ..++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEE
Confidence 45555544322 899999999999996621 0 122334456789999998 6 67788
Q ss_pred EEEEcCCcEEEEecCCC--cEE--EEeccCCcEEEEEEccCC---C---EEEEEecCCcEEEEeC
Q 005646 411 ISGSIDGKVRIWAVLSC--HVV--DWVDIRQIVTAVCYRPDG---Q---GGIVGSMMGDCRFYNV 465 (686)
Q Consensus 411 ~sgs~Dg~V~iwd~~~~--~~~--~~~~~~~~V~~v~~spdg---~---~l~~gs~dg~i~iwd~ 465 (686)
|+++....|.||-.... +.. ....+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888865432 211 122356678899997743 2 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.9 Score=31.30 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=26.4
Q ss_pred CceEEEEEeeC-C--CEEEEEeCCCcEEEEEeecC
Q 005646 251 GSILTMKFSPD-G--QYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 251 ~~I~~l~fspd-g--~~Lasgs~Dg~I~vWd~~~~ 282 (686)
++|.+|+|+|+ + .+|+-+-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 57999999984 4 58888877899999999853
|
It contains a characteristic DLL sequence motif. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=90.18 E-value=9.8 Score=33.59 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=58.5
Q ss_pred EEEEeecCCCEEEEEEcCCcEEEEecCCC--------cEEEEeccCCcEEEEEEcc-----CCCEEEEEecCCcEEEEeC
Q 005646 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSC--------HVVDWVDIRQIVTAVCYRP-----DGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 399 ~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~--------~~~~~~~~~~~V~~v~~sp-----dg~~l~~gs~dg~i~iwd~ 465 (686)
.-.|.. ....|++++.-|+|.|++.... ..+.+......|++++-.+ +...|++|+ ...+..||+
T Consensus 3 iGkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 345555 4557888889999999987633 3456777888888887655 344667765 467999999
Q ss_pred CCCeeeeeeeEEeeccccCCCCCeEEEEEe
Q 005646 466 SDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (686)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~I~~l~fs 495 (686)
..+.-.+..++ ...|.++.+-
T Consensus 81 ~~N~d~Fyke~---------~DGvn~i~~g 101 (136)
T PF14781_consen 81 ENNSDLFYKEV---------PDGVNAIVIG 101 (136)
T ss_pred ccCchhhhhhC---------ccceeEEEEE
Confidence 98876553332 1446666653
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.01 E-value=11 Score=35.83 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=44.0
Q ss_pred CCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
..+..+.| .+|...++|.++-+++..+..++.=+.++- ++..|+.+....+++.-|..+-.
T Consensus 101 d~~y~LTw----------~egvaf~~d~~t~~~lg~~~y~GeGWgLt~---d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 101 DYFYQLTW----------KEGVAFKYDADTLEELGRFSYEGEGWGLTS---DDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred ceEEEEEe----------ccceeEEEChHHhhhhcccccCCcceeeec---CCcceEeeCCceEEEecCHHHhh
Confidence 45566666 467888999999999999997777777775 45556666556677777766543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=89.47 E-value=6.1 Score=45.74 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEeC
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd~ 465 (686)
-.|..|.++|+|++++..+..|-+ |-.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~L 112 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLEL 112 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEe
Confidence 358899999999999998886644 4444
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=89.38 E-value=9.6 Score=43.04 Aligned_cols=108 Identities=8% Similarity=0.061 Sum_probs=72.1
Q ss_pred CeeEEEeeCCCEEEEEE-CCCcEEEEECCCCeeeeEe--eCCCCeEEEEEeec-CCCEEEEEEcCCcEEEEecCC-----
Q 005646 356 EILDLSWSKNNYLLSAS-IDKTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLS----- 426 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s-~Dg~V~iWd~~~~~~~~~~--~h~~~V~~v~fsp~-~~~~l~sgs~Dg~V~iwd~~~----- 426 (686)
...-+.-+.-+.++... ....+.|||...+.....- ...+.|..+.|... +++.+++.+....|.+|--..
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444444445444433 4457999999988755443 35899999999752 678888888999999985421
Q ss_pred C-------cEEEEeccC-CcEEEEEEccCCCEEEEEecCCcEEEEeC
Q 005646 427 C-------HVVDWVDIR-QIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 427 ~-------~~~~~~~~~-~~V~~v~~spdg~~l~~gs~dg~i~iwd~ 465 (686)
. +.+....+. .+|...+|.++|..++.+ .+.+.|||-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1 122333443 678999999999666543 367888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=89.31 E-value=2.6 Score=41.23 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=53.1
Q ss_pred CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe---------------ccCCcEEEEEEccCCCEEEEEecCC
Q 005646 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV---------------DIRQIVTAVCYRPDGQGGIVGSMMG 458 (686)
Q Consensus 394 ~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~---------------~~~~~V~~v~~spdg~~l~~gs~dg 458 (686)
..++..+. . +++++++-..+|.+++||+.+++.+... .....|..+.++.+|.-+++- .+|
T Consensus 12 gs~~~~l~--~-~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng 87 (219)
T PF07569_consen 12 GSPVSFLE--C-NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNG 87 (219)
T ss_pred CCceEEEE--e-CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCC
Confidence 34444444 3 7889999999999999999998765211 244668889999888777665 458
Q ss_pred cEEEEeCCCCee
Q 005646 459 DCRFYNVSDNHL 470 (686)
Q Consensus 459 ~i~iwd~~~~~~ 470 (686)
..+.|+..-...
T Consensus 88 ~~y~y~~~L~~W 99 (219)
T PF07569_consen 88 DSYSYSPDLGCW 99 (219)
T ss_pred CEEEecccccee
Confidence 889998765443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.22 E-value=13 Score=41.96 Aligned_cols=93 Identities=16% Similarity=0.248 Sum_probs=52.0
Q ss_pred CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCC--------cEEEEecCCCcEEEEeccC---CcEEE
Q 005646 375 KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG--------KVRIWAVLSCHVVDWVDIR---QIVTA 441 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg--------~V~iwd~~~~~~~~~~~~~---~~V~~ 441 (686)
..+..||..+.+....-. ....-.+++. . ++.+++.|+.+. .+.+||..+.+-....... .....
T Consensus 406 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~ 483 (534)
T PHA03098 406 KTVECFSLNTNKWSKGSPLPISHYGGCAIY-H-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASL 483 (534)
T ss_pred ceEEEEeCCCCeeeecCCCCccccCceEEE-E-CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceE
Confidence 458889988775443222 1111122222 2 567777776532 3888998877543322211 11122
Q ss_pred EEEccCCCEEEEEecC-----CcEEEEeCCCCeee
Q 005646 442 VCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLE 471 (686)
Q Consensus 442 v~~spdg~~l~~gs~d-----g~i~iwd~~~~~~~ 471 (686)
+. -+++.++.|+.+ +.+.+||..++...
T Consensus 484 ~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 484 CI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EE--ECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 22 267777787764 46889998887654
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=88.99 E-value=1.2 Score=30.72 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=27.1
Q ss_pred CCeEEEEEeecCC--CEEEEEEcCCcEEEEecCC
Q 005646 395 NYVTCVHFNPVDD--NYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 395 ~~V~~v~fsp~~~--~~l~sgs~Dg~V~iwd~~~ 426 (686)
+.|.++.|+|..+ ++|+..-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998555 6888888889999999995
|
It contains a characteristic DLL sequence motif. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=88.89 E-value=15 Score=41.55 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=47.6
Q ss_pred eEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe--ccCCcEEEEEEc--cCCCEEEEEecCCcEEEEeC
Q 005646 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAVCYR--PDGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 397 V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~V~~v~~s--pdg~~l~~gs~dg~i~iwd~ 465 (686)
.+-+.-+. .++.-++-+...++.|||.+.+...... ...+.|..+.|. |+|+.+++-+..+.|.+|--
T Consensus 32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 33344443 3444444444567999999988765333 447889999885 58999888889999999964
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.94 E-value=20 Score=43.29 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=47.5
Q ss_pred ccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE
Q 005646 351 HGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 351 ~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
.-|..++.+..+...+.++.+..-+.+-+|+.........+.-.+. ..++ ++..++++..||.+..||...++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 195 SLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ----LESR-DGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccc----cCcc-CCceEEEEEecCCEEeeecCCCce
Confidence 3445556666555555455566667777777655444333331111 1155 899999999999999999998755
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.93 E-value=28 Score=36.51 Aligned_cols=107 Identities=8% Similarity=0.056 Sum_probs=62.8
Q ss_pred CCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 354 ~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
...+.++.+.+++.++..+..|.+++=..+.+..-.... ....+..+.+.| ++..++ ++.+|.|. .....++
T Consensus 214 ~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLL-VSKDGGK 290 (334)
T ss_pred cccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEE-EcCCCeEE-EeCCCCC
Confidence 357788888888844455566776542233433222212 124578899988 666555 45577654 3444444
Q ss_pred EEEEe----ccCCcEEEEEEccCCCEEEEEecCCcEEEEe
Q 005646 429 VVDWV----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN 464 (686)
Q Consensus 429 ~~~~~----~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd 464 (686)
.-... ......+.+.|..+++.+++| ..|.|.-|+
T Consensus 291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 291 TWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYV 329 (334)
T ss_pred CCeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEEEec
Confidence 32221 223457788888777776655 678887765
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=86.86 E-value=46 Score=35.79 Aligned_cols=105 Identities=12% Similarity=0.066 Sum_probs=64.1
Q ss_pred CCCeeEEEeeCCCEEEEEECCCcEEEEECCCCe-----eeeEeeC---CCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH-----CLRVFPH---SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 354 ~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~-----~~~~~~h---~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
...+..+.+.+++.++.++.+|.+. |....++ ....... ...++.+.|.+ ++..+ .++..|.+... ..
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~~-a~G~~G~v~~s-~D 355 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEAW-AAGGSGILLRS-TD 355 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcC-CCcEE-EEECCCcEEEe-CC
Confidence 3467888888888555566677654 3344443 2222222 23588999986 65554 55567876665 34
Q ss_pred CCcEEEE----eccCCcEEEEEEccCCCEEEEEecCCcEEEE
Q 005646 426 SCHVVDW----VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463 (686)
Q Consensus 426 ~~~~~~~----~~~~~~V~~v~~spdg~~l~~gs~dg~i~iw 463 (686)
.++.-.. .......+.+.|.++++.+++| .+|.|.-|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 4443222 2335568899998888777776 66776554
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.84 E-value=42 Score=37.17 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=55.3
Q ss_pred CC-EEEEEECC--CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCC---cEEEEecCCCcEEEEeccC
Q 005646 365 NN-YLLSASID--KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG---KVRIWAVLSCHVVDWVDIR 436 (686)
Q Consensus 365 ~~-~L~s~s~D--g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg---~V~iwd~~~~~~~~~~~~~ 436 (686)
++ ..+.|+.+ .++..||..+++....-. ..-.-.+++. .++.+.+.|+.++ .+..||..+.+-.......
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 45 55555543 468888887665433222 1111112222 1678888888654 4677888766433222221
Q ss_pred CcEE-EEEEccCCCEEEEEecCCcEEEEeCCCCeeee
Q 005646 437 QIVT-AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 437 ~~V~-~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~ 472 (686)
.+.. ..+..-+|+..+.| |.+.+||..+++...
T Consensus 396 ~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~ 429 (480)
T PHA02790 396 YPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTL 429 (480)
T ss_pred CccccceEEEECCEEEEEC---CceEEecCCCCcEeE
Confidence 1111 11223467677776 457889998877653
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.82 E-value=36 Score=38.71 Aligned_cols=37 Identities=8% Similarity=0.013 Sum_probs=30.3
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
...+.+..+..||+.++|+.=+.+|.|.+-+....+.
T Consensus 214 ~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 214 WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQI 250 (829)
T ss_pred CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhh
Confidence 3346788899999999999999999999988765543
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=85.88 E-value=24 Score=37.55 Aligned_cols=108 Identities=10% Similarity=0.072 Sum_probs=56.5
Q ss_pred CCeEEEEEeecCCCEEEEEE-----------cCC-cEEEEecCC--CcE---EEEeccCCcEEEEEEccCCCEEEEEecC
Q 005646 395 NYVTCVHFNPVDDNYFISGS-----------IDG-KVRIWAVLS--CHV---VDWVDIRQIVTAVCYRPDGQGGIVGSMM 457 (686)
Q Consensus 395 ~~V~~v~fsp~~~~~l~sgs-----------~Dg-~V~iwd~~~--~~~---~~~~~~~~~V~~v~~spdg~~l~~gs~d 457 (686)
.....|+|.+ +++++++-. ..+ .|.+++-.+ ++. ..+...-...+.+++.++| |++++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 4567889998 888777653 223 677776543 221 2222333456889999998 4444444
Q ss_pred CcEEEEeCCCCeeee-eeeEEeecccc---CCCCCeEEEEEeCCCCCeEEEEe
Q 005646 458 GDCRFYNVSDNHLEL-DAEICVHSKKK---APCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 458 g~i~iwd~~~~~~~~-~~~~~~~~~~~---~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
...++.|........ ..+..+..... .+......+.|.| ++.+.++.+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecc
Confidence 333344554221110 11111111111 1234578899999 666655544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=84.93 E-value=23 Score=35.49 Aligned_cols=99 Identities=20% Similarity=0.114 Sum_probs=57.5
Q ss_pred CeEEEEEeecCCCEEEEEE---cCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEe-CCCCeee
Q 005646 396 YVTCVHFNPVDDNYFISGS---IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN-VSDNHLE 471 (686)
Q Consensus 396 ~V~~v~fsp~~~~~l~sgs---~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd-~~~~~~~ 471 (686)
.+.+.++++ +++.++... ....|+++.......... ....++.-.|+++|...++...+...+++. ...+...
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 789999999 787766655 233455554433222222 334788889999988887777777777774 2222221
Q ss_pred eeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 472 ~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
. ..+.... ....|+.|.++| ++..++
T Consensus 102 ~---~~v~~~~--~~~~I~~l~vSp-DG~RvA 127 (253)
T PF10647_consen 102 P---VEVDWPG--LRGRITALRVSP-DGTRVA 127 (253)
T ss_pred e---EEecccc--cCCceEEEEECC-CCcEEE
Confidence 1 1111100 011799999999 444333
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=84.90 E-value=42 Score=36.06 Aligned_cols=105 Identities=11% Similarity=0.047 Sum_probs=60.0
Q ss_pred eeEEEeeCCCEEEEEECCCcE-EEEECCCCe-eeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE-----
Q 005646 357 ILDLSWSKNNYLLSASIDKTV-RLWRVGNDH-CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV----- 429 (686)
Q Consensus 357 V~~l~~s~~~~L~s~s~Dg~V-~iWd~~~~~-~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~----- 429 (686)
...+..++++.++..+..|.+ +-||-.... ..........++.+.|.+ ++.+++++ .+|.+. |....++.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~-~S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLY-VSKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEE-EecCCCCcccccc
Confidence 445566788844444445543 345433221 112233556789999988 77777665 566643 34444431
Q ss_pred EEEec---cCCcEEEEEEccCCCEEEEEecCCcEEEEeC
Q 005646 430 VDWVD---IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 430 ~~~~~---~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~ 465 (686)
..... ....++++.|.+++..+++| ..|.+..-.-
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D 355 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTD 355 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCC
Confidence 12111 22358999999988776665 6677666543
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.71 E-value=15 Score=39.59 Aligned_cols=130 Identities=14% Similarity=0.174 Sum_probs=78.3
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeec------CCCEEEEEEcCCcEEEEecCC-CcEEEEeccCCc-
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPV------DDNYFISGSIDGKVRIWAVLS-CHVVDWVDIRQI- 438 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~------~~~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~~~~- 438 (686)
.+..+.....+.--|+..|+.+..+.....| -++|.|. ....-+.|-.+..|.-.|.+- +..+.....+..
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~ 560 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYK 560 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcc
Confidence 4556777778888899999999999855555 6888882 112233444455555556653 222222222222
Q ss_pred ----EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 439 ----VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 439 ----V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
..+..-...| ++|+|+..|.|++||--.-.... ...+-...|..+..+. +++.++++|.
T Consensus 561 tKn~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKt--------alP~lG~aIk~idvta-~Gk~ilaTCk 623 (776)
T COG5167 561 TKNKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKT--------ALPGLGDAIKHIDVTA-NGKHILATCK 623 (776)
T ss_pred ccccccccccccCc-eEEEecCCCceeeehhhcchhhh--------cCcccccceeeeEeec-CCcEEEEeec
Confidence 3333333344 89999999999999954322111 1222345688888888 6666666654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.10 E-value=46 Score=37.88 Aligned_cols=222 Identities=17% Similarity=0.142 Sum_probs=111.2
Q ss_pred cceeeecCC-CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEE-EEEeecC
Q 005646 205 EGERVRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVR-LWQVVED 282 (686)
Q Consensus 205 ~~~~~s~~~-~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~-vWd~~~~ 282 (686)
+...+..+. ..|++...+|++.||++-....+.. -.+ +......|..+.|..+|-.+++. +|.+. +-++...
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~--svg--~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESN--SVG--FESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEP 158 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchhhhccc--ccc--cccccCceeEEEEecCceEEEec--CCcEEEEcCCCcc
Confidence 344455444 4678889999999999866444332 111 12233457777777777555554 34443 3333322
Q ss_pred eeeeee---ccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 283 ERLTEV---DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 283 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
. +.++ .....+..|.....++......+.....-...+.....+ ....+.+..-...+..
T Consensus 159 ~-~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~----------------~~q~~~~~~~~~~~~k 221 (829)
T KOG2280|consen 159 K-LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES----------------RVQLHALSWPNSSVVK 221 (829)
T ss_pred h-hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecc----------------cccccccCCCCceEEE
Confidence 2 1111 112222233333333322222222111000000000000 0112222222356788
Q ss_pred EEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccC
Q 005646 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR 436 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~ 436 (686)
++.||+. +|+-=...|.|.+-.++..+++..+. ...+-..++|.- ++ -++.+.+..|.+..-....+..+.++.
T Consensus 222 i~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg-nd--aVvl~~e~~l~lvgp~gd~V~f~yd~t 298 (829)
T KOG2280|consen 222 ISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG-ND--AVVLSWEVNLMLVGPPGDSVQFYYDET 298 (829)
T ss_pred EEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeec-CC--ceEEEEeeeEEEEcCCCCccccccCCC
Confidence 8999988 88888899999999998888887776 333334677754 32 233334444555544444443444333
Q ss_pred CcEEEEEEccCCCEEEEEe
Q 005646 437 QIVTAVCYRPDGQGGIVGS 455 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs 455 (686)
. + +.--+||-.+++.+
T Consensus 299 ~-~--l~~E~DGVRI~t~t 314 (829)
T KOG2280|consen 299 A-I--LSAEVDGVRIITST 314 (829)
T ss_pred c-e--eeeccCeeEEeccc
Confidence 2 1 44555766666543
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=83.72 E-value=61 Score=33.97 Aligned_cols=105 Identities=16% Similarity=0.153 Sum_probs=61.7
Q ss_pred CCCeeEEEeeCCCEEEEEECCCcEEE-EECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 354 SGEILDLSWSKNNYLLSASIDKTVRL-WRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 354 ~~~V~~l~~s~~~~L~s~s~Dg~V~i-Wd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
...+.++.+.+++.++..+..|.+.. +|- .++.-.... -...++++.+.| ++..++.| ..|.+++=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCcc
Confidence 45688899999885555555665543 222 222222222 456889999998 77776665 4676653233444322
Q ss_pred EEec-----cCCcEEEEEEccCCCEEEEEecCCcEEE
Q 005646 431 DWVD-----IRQIVTAVCYRPDGQGGIVGSMMGDCRF 462 (686)
Q Consensus 431 ~~~~-----~~~~V~~v~~spdg~~l~~gs~dg~i~i 462 (686)
.... ....+.++.+.|+++.+++| .+|.+..
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~ 284 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV 284 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE
Confidence 2111 12347889999988766655 5665543
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=83.31 E-value=45 Score=32.15 Aligned_cols=110 Identities=12% Similarity=0.112 Sum_probs=69.7
Q ss_pred eEEEeeCCCEEEEEECCCcEEEEECC--CCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC---C---cEEEE-ecCCC-
Q 005646 358 LDLSWSKNNYLLSASIDKTVRLWRVG--NDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---G---KVRIW-AVLSC- 427 (686)
Q Consensus 358 ~~l~~s~~~~L~s~s~Dg~V~iWd~~--~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D---g---~V~iw-d~~~~- 427 (686)
..+.-.+.+.|+.+.....|.+|++. ..+.+..|..-+.|..++++. .|+|++|-=.+ . .+|+| +.+..
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 33444454445444666789999988 345677777779999999999 89999996433 2 56775 22111
Q ss_pred ---cE---------------------E--EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe
Q 005646 428 ---HV---------------------V--DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 428 ---~~---------------------~--~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
+. + .-.....++.+++..|-.-.|++| .++++.+|.+....
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg-~~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG-CGNKLVLFTLKYQT 166 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE-cCCEEEEEEEEEEE
Confidence 00 1 112234567788888844445555 45689999875433
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=83.29 E-value=98 Score=36.06 Aligned_cols=67 Identities=9% Similarity=0.178 Sum_probs=37.5
Q ss_pred eEEEeeCCC--EEEEEECC-----CcEEEEECCCC--eeeeEee-CCCCeEEEEEeecCCCEEEEEEc---CCcEEEEec
Q 005646 358 LDLSWSKNN--YLLSASID-----KTVRLWRVGND--HCLRVFP-HSNYVTCVHFNPVDDNYFISGSI---DGKVRIWAV 424 (686)
Q Consensus 358 ~~l~~s~~~--~L~s~s~D-----g~V~iWd~~~~--~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~---Dg~V~iwd~ 424 (686)
..++|.+++ ++++.-.+ ..|..+++.++ +-...+. ......-..+.+.++.+++..+. ++.+.+++.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 458999887 44443322 36888888887 3333444 22223322233336776655443 357888885
|
|
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=83.22 E-value=1e+02 Score=36.29 Aligned_cols=68 Identities=12% Similarity=0.001 Sum_probs=50.3
Q ss_pred CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe----cc----------------CCcEEEEEEccCCCEEE
Q 005646 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV----DI----------------RQIVTAVCYRPDGQGGI 452 (686)
Q Consensus 393 h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~----~~----------------~~~V~~v~~spdg~~l~ 452 (686)
....|.+|+... -+.+++..-.||+|.++|-.+-+.+... .. -..+..++|||.+..++
T Consensus 258 ~~~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 258 LNKRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV 336 (753)
T ss_pred cCCeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence 346677887766 7778999999999999998876544222 11 11234588999999999
Q ss_pred EEecCCcEE
Q 005646 453 VGSMMGDCR 461 (686)
Q Consensus 453 ~gs~dg~i~ 461 (686)
.-..+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 998999866
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.21 E-value=0.18 Score=53.22 Aligned_cols=96 Identities=15% Similarity=0.256 Sum_probs=71.0
Q ss_pred CCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeE-ee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 354 SGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRV-FP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 354 ~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~-~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
++...+++|..++ .++.+-..+.+.+||+.+...... +. |.... +.|++ ....++.+...|.++|++..+.+
T Consensus 74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR 150 (615)
T KOG2247|consen 74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSR 150 (615)
T ss_pred chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--Hhhcc-CCccccccccccceEEEeccchh
Confidence 4566788888877 666777889999999986533221 22 33333 78888 77788888899999999998887
Q ss_pred EEEEec-cCCcEEEEEEccCCCEEE
Q 005646 429 VVDWVD-IRQIVTAVCYRPDGQGGI 452 (686)
Q Consensus 429 ~~~~~~-~~~~V~~v~~spdg~~l~ 452 (686)
.....+ |...++++++.+.+..+.
T Consensus 151 ~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 151 RIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred hhhhhcccccceeEEEecccceeee
Confidence 665555 888899999999775443
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=82.83 E-value=4.5 Score=39.54 Aligned_cols=76 Identities=11% Similarity=0.077 Sum_probs=55.8
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceec-------ccCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQ-------AHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~-------~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW 277 (686)
.+..+...++++++.+.+|.+++||+.+....+...-....+. .....|..+.++.+|.-|++-+ +|....|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence 4556778899999999999999999988655443311111222 4667899999999998887765 4788999
Q ss_pred Eeec
Q 005646 278 QVVE 281 (686)
Q Consensus 278 d~~~ 281 (686)
+..-
T Consensus 93 ~~~L 96 (219)
T PF07569_consen 93 SPDL 96 (219)
T ss_pred cccc
Confidence 8654
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=82.80 E-value=55 Score=36.30 Aligned_cols=89 Identities=13% Similarity=0.175 Sum_probs=56.1
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCC--eeeeEeeCCCCeEEEEEeecCCCEEEEEEcC-CcEEEEecCCCcE-----
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGND--HCLRVFPHSNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHV----- 429 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~--~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~~----- 429 (686)
.+.|+|.. .|+.-.....-.+.++... +....+...+-|.|.+|.+ ||+.|+.+-.. =.-+|||-.....
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~qKtL~~Csf 195 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQKTLHRCSF 195 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCchhhhhhCCc
Confidence 56799988 5554444444455666543 3444556889999999999 88877765433 3467888654322
Q ss_pred EEEeccCCcEEEEEEccCC
Q 005646 430 VDWVDIRQIVTAVCYRPDG 448 (686)
Q Consensus 430 ~~~~~~~~~V~~v~~spdg 448 (686)
-..++..+.|.++.-.-|.
T Consensus 196 cPVFdv~~~Icsi~AT~ds 214 (671)
T PF15390_consen 196 CPVFDVGGYICSIEATVDS 214 (671)
T ss_pred ceeecCCCceEEEEEeccc
Confidence 2345566677776655554
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.55 E-value=20 Score=43.24 Aligned_cols=164 Identities=13% Similarity=0.158 Sum_probs=87.9
Q ss_pred cCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCc----e-eeeeccccceeEE
Q 005646 249 HDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSEL----K-PLFMDKEKISILK 322 (686)
Q Consensus 249 H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~ 322 (686)
|...=..|-+-|. ++.=+| .|..+.+|+++++.....+......+-.+.......+.. . .+.........+.
T Consensus 77 ~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~il 154 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVIL 154 (1311)
T ss_pred CcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEE
Confidence 3333344545553 333333 578899999999777666665544443333332222211 1 1111111111111
Q ss_pred Eee-ccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECC----CC----eee-----
Q 005646 323 SLR-RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVG----ND----HCL----- 388 (686)
Q Consensus 323 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~----~~----~~~----- 388 (686)
.+. .......-.+.. ...+....-.|.|+....+|.++-++.|| .||.+. .+ +|-
T Consensus 155 gV~~~~~~~~~~~f~~---------~~~i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt 223 (1311)
T KOG1900|consen 155 GVSFDEFTGELSIFNT---------SFKISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLT 223 (1311)
T ss_pred EEEeccccCccccccc---------ceeeecCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCc
Confidence 111 111111000000 02222345678899977888777777888 555541 11 111
Q ss_pred ------------eEe-eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC
Q 005646 389 ------------RVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 389 ------------~~~-~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~ 426 (686)
... .+..+|..|.... ..+++++-+..|+|++||+..
T Consensus 224 ~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 224 KSVLSSLVPSLLSVPGSSKDPIRQITIDN-SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhHHHHhhhhhhcCCCCCCCcceeeEecc-ccceeeeeccCceEEEEEccC
Confidence 111 2577999999987 788999999999999999976
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=81.08 E-value=75 Score=33.21 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=30.4
Q ss_pred eeeecCCCccceeeccceEEEEEcCCcc-ccccccccCceecccCCceEEEEEeeC
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRS-KELSALYKGQEIQAHDGSILTMKFSPD 261 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~-~~~~~~~~~~~l~~H~~~I~~l~fspd 261 (686)
..+.+++.. +++...|+|++++..... ..+.... ............++|+|+
T Consensus 7 ~a~~pdG~l-~v~e~~G~i~~~~~~g~~~~~v~~~~--~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 7 MAFLPDGRL-LVAERSGRIWVVDKDGSLKTPVADLP--EVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEETTSCE-EEEETTTEEEEEETTTEECEEEEE-T--TTBTSTTBSEEEEEE-TT
T ss_pred EEEeCCCcE-EEEeCCceEEEEeCCCcCcceecccc--cccccccCCcccceeccc
Confidence 456677654 445669999999833222 1111111 234456678999999995
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.55 E-value=94 Score=33.98 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=29.5
Q ss_pred CCeeEEEeeCCC----EEEEEECCCcEEEEECCCCeeeeEe
Q 005646 355 GEILDLSWSKNN----YLLSASIDKTVRLWRVGNDHCLRVF 391 (686)
Q Consensus 355 ~~V~~l~~s~~~----~L~s~s~Dg~V~iWd~~~~~~~~~~ 391 (686)
-.+...+|+|+. +|+.-+.|.+||+||+....-+...
T Consensus 166 ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 166 LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 356788999975 8888899999999999877665443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 686 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-15 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 6e-05 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-14 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-14 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-14 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 3e-14 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-14 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-14 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 3e-14 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-14 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 3e-14 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-14 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 4e-14 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 4e-14 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 4e-14 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 4e-14 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 4e-14 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 4e-14 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 4e-14 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 3e-11 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-09 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-08 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-06 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 4e-08 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 1e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-07 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-07 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 4e-07 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 5e-07 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 5e-07 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 6e-07 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 6e-07 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-06 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 3e-06 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 3e-06 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 5e-06 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 5e-06 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 5e-06 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 6e-06 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 1e-05 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 1e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 3e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 6e-05 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-05 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 3e-05 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 3e-05 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-05 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 3e-05 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 3e-05 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 4e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 7e-05 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 7e-05 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 1e-04 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 1e-04 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 2e-04 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 3e-04 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 3e-04 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 6e-04 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 8e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 686 | |||
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.98 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.98 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.96 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.93 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.93 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.91 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.9 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.89 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.88 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.87 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.86 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.86 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.85 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.85 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.85 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.84 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.83 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.83 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.83 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.81 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.81 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.8 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.8 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.8 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.8 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.79 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.79 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.78 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.78 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.77 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.76 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.76 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.75 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.74 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.72 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.7 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.69 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.69 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.68 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.66 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.66 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.64 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.64 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.63 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.62 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.59 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.58 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.57 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.56 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.55 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.54 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.53 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.51 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.49 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.48 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.48 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.47 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.47 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.47 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.41 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.41 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.4 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.39 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.38 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.38 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.38 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.35 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.33 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.31 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.31 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.3 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.29 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.28 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.28 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.24 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.24 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.21 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.2 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.19 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.16 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.16 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.16 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.14 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.13 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.11 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.11 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.05 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.03 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.02 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.01 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.01 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.98 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.98 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.95 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.95 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.9 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.87 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.87 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.86 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.85 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.79 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.77 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.72 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.71 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.68 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.68 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.66 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.66 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.64 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.49 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.49 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.47 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.45 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.39 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.38 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.36 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.36 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.36 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.29 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.28 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.28 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.26 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.26 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.25 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.24 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.12 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.1 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.07 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.06 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.06 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.04 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.02 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.02 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.97 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.95 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.93 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.91 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.9 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.89 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.84 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.83 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.71 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.71 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.69 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.69 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.68 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.67 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.63 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.58 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.58 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.58 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.57 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.56 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.54 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.53 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.48 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.32 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.3 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.27 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.24 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.19 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.15 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.15 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.15 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.1 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.07 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.91 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.88 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.88 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.82 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.67 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.6 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.58 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.58 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.25 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.21 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.15 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.15 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.07 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 95.95 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.78 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.73 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.7 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.39 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.37 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 95.37 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 95.25 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.19 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 94.99 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 94.97 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 94.89 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 94.79 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 94.57 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.54 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 94.45 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 94.43 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 94.13 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 93.78 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 93.78 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 93.69 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 93.6 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 93.42 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 93.3 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 93.12 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 92.82 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 92.78 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 92.51 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 92.43 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 92.15 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 89.28 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 89.21 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 88.95 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 88.43 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 88.24 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 87.76 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 87.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 87.1 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 86.36 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 85.6 | |
| 2rr3_B | 47 | OSBP, oxysterol-binding protein 1; lipid transport | 85.56 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 85.45 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 85.33 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 85.03 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 84.85 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 84.11 |
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=411.27 Aligned_cols=424 Identities=17% Similarity=0.202 Sum_probs=310.4
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
...+|+++++.+++++ ++.|+||+..... ....+.+|...|++++|+|+|++||||+.|++|+|||+.+++.
T Consensus 22 ~~~~~spdg~~l~~~~-~~~v~l~~~~~~~-------~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~ 93 (611)
T 1nr0_A 22 VVLGNTPAGDKIQYCN-GTSVYTVPVGSLT-------DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 93 (611)
T ss_dssp CCCEECTTSSEEEEEE-TTEEEEEETTCSS-------CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred eEEeeCCCCCEEEeCC-CCEEEEecCCCcc-------cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc
Confidence 3457888999999887 5799999876432 2356889999999999999999999999999999999975542
Q ss_pred --eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec-cCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 285 --LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR-TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 285 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
...+..+.. .+..+.+.+++...+..... .....+.+|+. ......+.+|...|.+++
T Consensus 94 ~~~~~~~~~~~-------------~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~------~~~~~~l~gh~~~v~~v~ 154 (611)
T 1nr0_A 94 ILKTTIPVFSG-------------PVKDISWDSESKRIAAVGEGRERFGHVFLFDT------GTSNGNLTGQARAMNSVD 154 (611)
T ss_dssp CEEEEEECSSS-------------CEEEEEECTTSCEEEEEECCSSCSEEEEETTT------CCBCBCCCCCSSCEEEEE
T ss_pred eeeEeecccCC-------------ceEEEEECCCCCEEEEEECCCCceeEEEEeeC------CCCcceecCCCCCceEEE
Confidence 233333333 34444455544433322111 11224444442 245667889999999999
Q ss_pred eeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe-----
Q 005646 362 WSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV----- 433 (686)
Q Consensus 362 ~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~----- 433 (686)
|+|++ .|++++.|++|++||..+++++..+. |...|++++|+| ++++|++|+.|++|++||+.+++.+...
T Consensus 155 f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~ 233 (611)
T 1nr0_A 155 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 233 (611)
T ss_dssp ECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeeccccc
Confidence 99998 69999999999999999999988887 999999999999 9999999999999999999998877554
Q ss_pred ---ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE---------------------------------
Q 005646 434 ---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC--------------------------------- 477 (686)
Q Consensus 434 ---~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~--------------------------------- 477 (686)
.|...|++++|+|+|++|++++.|++|++||+.++++.......
T Consensus 234 ~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~ 313 (611)
T 1nr0_A 234 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL 313 (611)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT
T ss_pred cccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC
Confidence 68899999999999999999999999999999987654322100
Q ss_pred --eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-------------------------------------
Q 005646 478 --VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN------------------------------------- 518 (686)
Q Consensus 478 --~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~------------------------------------- 518 (686)
......+|...|++++|+| ++.+|++++.|++|++||..+
T Consensus 314 ~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~ 392 (611)
T 1nr0_A 314 GSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV 392 (611)
T ss_dssp TEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred CCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEE
Confidence 0112346888999999999 889999999999999998531
Q ss_pred ------------------------------------------------------------ceeEcCCCCEEEEEeCCCcE
Q 005646 519 ------------------------------------------------------------VIGKYKDGKHIVSAGEDSNV 538 (686)
Q Consensus 519 ------------------------------------------------------------~~~~~~dg~~l~sgs~Dg~V 538 (686)
.++++|||++|++|+.|++|
T Consensus 393 w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v 472 (611)
T 1nr0_A 393 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV 472 (611)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred eecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeE
Confidence 24577899999999999999
Q ss_pred EEEeCCCCCCCCccccccccccccccC-CcEEEecCCCC-----------cCCCCCC-CCcccc--cCCCC--CcccccC
Q 005646 539 YMWNCIGHEEPAHDQAKTIRSLERFTT-NASIAIPWCGL-----------KCGNAEK-EPQLHV--SDDDS--PENLAFA 601 (686)
Q Consensus 539 ~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~s~~g~-----------~~~~~~~-g~~l~~--~~~~~--~~~~~~s 601 (686)
+|||+.++.. ..+.. ..+.. ...++|+++|. .+|+..+ +..+.. ...|. ...++|+
T Consensus 473 ~lwd~~~~~~------~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fs 545 (611)
T 1nr0_A 473 HVYKLSGASV------SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS 545 (611)
T ss_dssp EEEEEETTEE------EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred EEEEccCCce------eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEEC
Confidence 9999976531 11111 12222 55666666654 4688776 444433 22244 3456899
Q ss_pred CCccccCccccccCCCCCCCCCCCCcCCCcc-ccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 602 PARFSLGQEYVFESFPKGCATWPEEKLPALS-QLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 602 pd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
|| +..+++++.|+++++|+.+...... .. ..++. . ....++ .++++|. |||||.||+||+|+.
T Consensus 546 pd----g~~lasgs~D~~v~lW~~~~~~~~~~~~--~~~h~---~----~~v~~v-~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 546 PD----NVRLATGSLDNSVIVWNMNKPSDHPIII--KGAHA---M----SSVNSV-IWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp TT----SSEEEEEETTSCEEEEETTCTTSCCEEE--TTSST---T----SCEEEE-EEEETTE-EEEEETTSCEEEEEC
T ss_pred CC----CCEEEEEECCCcEEEEECCCcccccchh--hccCc---c----cCeeEE-EEcCCCE-EEEecCCCCEEEEec
Confidence 99 5677789999999999976533111 00 00000 0 011222 2345688 999999999999974
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=375.55 Aligned_cols=431 Identities=24% Similarity=0.324 Sum_probs=307.4
Q ss_pred ecccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 005646 200 VDKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (686)
Q Consensus 200 ~~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW 277 (686)
..|...+ .+|+++++++++|+.|+.|+|||.... ..+++.+|.+.|++|+|+|||++||+++.|++|+||
T Consensus 13 ~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~--------~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vW 84 (577)
T 2ymu_A 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 84 (577)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSC--------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCC--------EEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 3466655 457788899999999999999985321 135688999999999999999999999999999999
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCC--------------------------------------------------
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSE-------------------------------------------------- 307 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 307 (686)
|+ +++.+..+..+...+.++.|.++....
T Consensus 85 d~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (577)
T 2ymu_A 85 NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 163 (577)
T ss_dssp ET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred EC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccce
Confidence 96 567777777666555555554332110
Q ss_pred -------------------ceeeeeccccceeE------------------EEeec-cCCceEEEeCC------------
Q 005646 308 -------------------LKPLFMDKEKISIL------------------KSLRR-TSESACVVFPP------------ 337 (686)
Q Consensus 308 -------------------~~~~~~~~~~~~~~------------------~~~~~-~~~~~~~~~~~------------ 337 (686)
+..+.+.+++...+ ..+.. ......+.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~ 243 (577)
T 2ymu_A 164 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 243 (577)
T ss_dssp EEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred eccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCC
Confidence 00000111100000 00000 00011111111
Q ss_pred --ccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEE
Q 005646 338 --KVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISG 413 (686)
Q Consensus 338 --~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sg 413 (686)
++|+...+.+..+.+|...|.+++|+|++ .|++++.|++|++||.. ++++..+. |...|++++|+| ++.+|+++
T Consensus 244 ~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~ 321 (577)
T 2ymu_A 244 TVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP-DGQTIASA 321 (577)
T ss_dssp CEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECT-TSSEEEEE
T ss_pred EEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECC-CCCEEEEE
Confidence 12333445667778888888888888888 88888888999999864 45555555 999999999999 99999999
Q ss_pred EcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 414 SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 414 s~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
+.|++|++||+....+.....|...|++++|+|+|+++++|+.||.|++||.... +.. ....|...|++++
T Consensus 322 ~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~-~~~--------~~~~~~~~v~~~~ 392 (577)
T 2ymu_A 322 SDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQ--------TLTGHSSSVRGVA 392 (577)
T ss_dssp ETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC-EEE--------EEECCSSCEEEEE
T ss_pred eCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC-EEE--------EecCCCCCeEEEE
Confidence 9999999999988888888889999999999999999999999999999997543 221 1234678899999
Q ss_pred EeCCCCCeEEEEeCCCcEEEEeCC--------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccc
Q 005646 494 FLPQDSSKVMVSCADSQVRILQGP--------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRS 559 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iwd~~--------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~ 559 (686)
|+| ++.+|++++.|+.|++||.. +.++++||+++|++++.|+.|++||+.... +..
T Consensus 393 ~s~-dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~---------~~~ 462 (577)
T 2ymu_A 393 FSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL---------LQT 462 (577)
T ss_dssp ECT-TSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCE---------EEE
T ss_pred ECC-CCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCE---------EEE
Confidence 999 88999999999999999853 237889999999999999999999975422 122
Q ss_pred cccccC-CcEEEecCCCC-----------cCCCCCCCCcccccCCCCCc--ccccCCCccccCccccccCCCCCCCCCCC
Q 005646 560 LERFTT-NASIAIPWCGL-----------KCGNAEKEPQLHVSDDDSPE--NLAFAPARFSLGQEYVFESFPKGCATWPE 625 (686)
Q Consensus 560 ~~~~~~-~~~v~~s~~g~-----------~~~~~~~g~~l~~~~~~~~~--~~~~spd~~~~~~~~~~~s~d~~~~~W~~ 625 (686)
+..+.. ...++++++|. ++|+ .++..+..+.+|... .++|+|| +..+++++.|+.+++|+.
T Consensus 463 ~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~l~~s~d----g~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPD----GQTIASASDDKTVKLWNR 537 (577)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEEECTT----SSCEEEEETTSEEEEECT
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEEEEEcCC----CCEEEEEECcCEEEEEeC
Confidence 222222 33445554432 5788 467888888777654 5679999 566778899999999994
Q ss_pred CcCCCccccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEe
Q 005646 626 EKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 678 (686)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~ 678 (686)
.... ...+ ..|. ....++ .++++|..|||||.||+||+|.
T Consensus 538 ~~~~-~~~~-------~~h~----~~v~~~-~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 538 NGQL-LQTL-------TGHS----SSVWGV-AFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TSCE-EEEE-------ECCS----SCEEEE-EECTTSSCEEEEETTSCEEEEC
T ss_pred CCCE-EEEE-------cCCC----CCEEEE-EEcCCCCEEEEEeCCCEEEEeC
Confidence 3211 1111 0110 011222 3456799999999999999995
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-38 Score=357.11 Aligned_cols=382 Identities=15% Similarity=0.181 Sum_probs=280.7
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC----CcEEEEEeec
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD----GVVRLWQVVE 281 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----g~I~vWd~~~ 281 (686)
..+|+++++++++|+.|+.|+|||........ ...+.+|.++|.+++|+|+|++||+++.+ +.|++|| .
T Consensus 64 ~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~-----~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~ 136 (611)
T 1nr0_A 64 VAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL-----KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--T 136 (611)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEESSSTTCCE-----EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--T
T ss_pred EEEECCCCcEEEEEeCCCCEEEeECCCCccee-----eEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--C
Confidence 36778899999999999999999985432211 24577899999999999999999999875 3677777 4
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
+.....+..+...+.++.|.++. ...+ ...+.+..+.+|+... .+.+..+.+|...|.+++
T Consensus 137 ~~~~~~l~gh~~~v~~v~f~p~~-------------~~~l--~s~s~D~~v~lwd~~~----~~~~~~l~~H~~~V~~v~ 197 (611)
T 1nr0_A 137 GTSNGNLTGQARAMNSVDFKPSR-------------PFRI--ISGSDDNTVAIFEGPP----FKFKSTFGEHTKFVHSVR 197 (611)
T ss_dssp CCBCBCCCCCSSCEEEEEECSSS-------------SCEE--EEEETTSCEEEEETTT----BEEEEEECCCSSCEEEEE
T ss_pred CCCcceecCCCCCceEEEECCCC-------------CeEE--EEEeCCCeEEEEECCC----CeEeeeeccccCceEEEE
Confidence 55555565555555555554432 2111 1223344444554332 245678899999999999
Q ss_pred eeCCC-EEEEEECCCcEEEEECCCCeeeeEe--------eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-
Q 005646 362 WSKNN-YLLSASIDKTVRLWRVGNDHCLRVF--------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD- 431 (686)
Q Consensus 362 ~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~--------~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~- 431 (686)
|+|++ +|++++.|++|+|||+.+++++..+ .|.+.|++++|+| ++++|++++.|++|++||+.+++++.
T Consensus 198 fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~ 276 (611)
T 1nr0_A 198 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKT 276 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeee
Confidence 99999 9999999999999999999988877 5999999999999 99999999999999999998876442
Q ss_pred -------------------------------------------EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCC
Q 005646 432 -------------------------------------------WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 432 -------------------------------------------~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~ 468 (686)
..+|...|++++|+|+|++|++++.||+|++||+.++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 277 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp EECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred ecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence 2357788999999999999999999999999999865
Q ss_pred eeeeee--------------------------eEEeec------------------------------------------
Q 005646 469 HLELDA--------------------------EICVHS------------------------------------------ 480 (686)
Q Consensus 469 ~~~~~~--------------------------~~~~~~------------------------------------------ 480 (686)
...... .+.+..
T Consensus 357 ~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~ 436 (611)
T 1nr0_A 357 ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 436 (611)
T ss_dssp CEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEE
T ss_pred ceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEE
Confidence 432110 000000
Q ss_pred ------cccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC----------------cceeEcCCCCEEEEEeCCCcE
Q 005646 481 ------KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP----------------NVIGKYKDGKHIVSAGEDSNV 538 (686)
Q Consensus 481 ------~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~----------------~~~~~~~dg~~l~sgs~Dg~V 538 (686)
....+...+.+++|+| ++++|++++.|+.|++||.. +.++|+|||++|++++.|++|
T Consensus 437 ~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v 515 (611)
T 1nr0_A 437 YSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKV 515 (611)
T ss_dssp EETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCE
Confidence 0001335578999999 88999999999999999853 246899999999999999999
Q ss_pred EEEeCCCCCCCCccccccccccccccC-CcEEEecCCCC-----------cCCCCCCCCc-c-cccCCC-C--CcccccC
Q 005646 539 YMWNCIGHEEPAHDQAKTIRSLERFTT-NASIAIPWCGL-----------KCGNAEKEPQ-L-HVSDDD-S--PENLAFA 601 (686)
Q Consensus 539 ~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~s~~g~-----------~~~~~~~g~~-l-~~~~~~-~--~~~~~~s 601 (686)
++|++.++...... ..+..+.. ...++|+++|. ++|+..++.. + ..+.+| . ...++|+
T Consensus 516 ~~w~~~~~~~~~~~-----~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs 590 (611)
T 1nr0_A 516 IPYSVANNFELAHT-----NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL 590 (611)
T ss_dssp EEEEGGGTTEESCC-----CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE
T ss_pred EEEEcCCCCceeee-----eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEc
Confidence 99999873211110 00111112 34455555443 6899887753 3 455555 3 3456789
Q ss_pred CCccccCccccccCCCCCCCCCCC
Q 005646 602 PARFSLGQEYVFESFPKGCATWPE 625 (686)
Q Consensus 602 pd~~~~~~~~~~~s~d~~~~~W~~ 625 (686)
||+ . +++++.|+++++|+.
T Consensus 591 ~d~----~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 591 NET----T-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp ETT----E-EEEEETTSCEEEEEC
T ss_pred CCC----E-EEEecCCCCEEEEec
Confidence 984 4 778899999999984
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-38 Score=339.12 Aligned_cols=268 Identities=22% Similarity=0.387 Sum_probs=233.9
Q ss_pred eeeecccCccee--eecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcE
Q 005646 197 ACVVDKQGEGER--VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVV 274 (686)
Q Consensus 197 ~~~~~~~~~~~~--~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I 274 (686)
.....|...+.+ |++++..+++|+.|+.|+||++..... .+.+.+|.+.|++++|+|+|++|++|+.|++|
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~-------~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-------ERTLKGHTDSVQDISFDHSGKLLASCSADMTI 174 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-------CEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-------EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 334466666654 566778999999999999999875432 35688999999999999999999999999999
Q ss_pred EEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC
Q 005646 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (686)
Q Consensus 275 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 354 (686)
+|||+.+++ .+..+.+|.
T Consensus 175 ~iwd~~~~~--------------------------------------------------------------~~~~~~~h~ 192 (410)
T 1vyh_C 175 KLWDFQGFE--------------------------------------------------------------CIRTMHGHD 192 (410)
T ss_dssp CEEETTSSC--------------------------------------------------------------EEECCCCCS
T ss_pred EEEeCCCCc--------------------------------------------------------------eeEEEcCCC
Confidence 999997654 334556899
Q ss_pred CCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-E
Q 005646 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-D 431 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~ 431 (686)
..|.+++|+|++ +|++++.|++|++||+.++.++..+. |...|.+++|+| ++.+|++|+.|++|++||+.+++.. .
T Consensus 193 ~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~ 271 (410)
T 1vyh_C 193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAE 271 (410)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeE
Confidence 999999999999 99999999999999999999999887 999999999999 9999999999999999999998876 4
Q ss_pred EeccCCcEEEEEEccC--------------------CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEE
Q 005646 432 WVDIRQIVTAVCYRPD--------------------GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITG 491 (686)
Q Consensus 432 ~~~~~~~V~~v~~spd--------------------g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~ 491 (686)
+..|...|.+++|+|+ |.+|++|+.||.|++||+.++.+... ...|...|++
T Consensus 272 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~--------~~~h~~~v~~ 343 (410)
T 1vyh_C 272 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT--------LVGHDNWVRG 343 (410)
T ss_dssp ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE--------EECCSSCEEE
T ss_pred ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE--------EECCCCcEEE
Confidence 5578899999999996 67899999999999999998875432 2347788999
Q ss_pred EEEeCCCCCeEEEEeCCCcEEEEeCC---------------cceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 492 FQFLPQDSSKVMVSCADSQVRILQGP---------------NVIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 492 l~fsp~~~~~l~~~s~D~~I~iwd~~---------------~~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
++|+| ++.+|++++.|+.|++||.. +.++|+|++++|+||+.||+|+||++
T Consensus 344 v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 344 VLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999 88999999999999999964 24678999999999999999999986
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=382.51 Aligned_cols=437 Identities=19% Similarity=0.266 Sum_probs=325.5
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+ .+|++++.++++|+.|+.|+||+...... ...+.+|.+.|++++|+|+|++||+|+.|++|+|||
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-------~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-------LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-------EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 344544 46778889999999999999999876432 356788999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+++.+..+..+...+.++.|.+.....+. + ..+.+..+.+|+... .+.+..+.+|...|.
T Consensus 686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~-------------sg~~d~~v~vwd~~~----~~~~~~~~~h~~~v~ 747 (1249)
T 3sfz_A 686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLL-A-------------TGSNDFFLKLWDLNQ----KECRNTMFGHTNSVN 747 (1249)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSCCEE-E-------------EEETTSCEEEEETTS----SSEEEEECCCSSCEE
T ss_pred CCCCceEEEEcCCCCcEEEEEEecCCCceEE-E-------------EEeCCCeEEEEECCC----cchhheecCCCCCEE
Confidence 9999998888877777666666554322211 1 122233344444332 246778889999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEe----------------------------------------------
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF---------------------------------------------- 391 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~---------------------------------------------- 391 (686)
+++|+|++ +|++++.|++|++||+.+++....+
T Consensus 748 ~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~ 827 (1249)
T 3sfz_A 748 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827 (1249)
T ss_dssp EEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred EEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 99999999 9999999999999999876544332
Q ss_pred ----------eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcE
Q 005646 392 ----------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDC 460 (686)
Q Consensus 392 ----------~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i 460 (686)
.|...|++++|+| ++.++++++.||.|++||+.++..+ ....|...|++++|+|+|+++++++.||.|
T Consensus 828 ~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v 906 (1249)
T 3sfz_A 828 TSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTI 906 (1249)
T ss_dssp TCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeE
Confidence 3677899999999 9999999999999999999998876 556788999999999999999999999999
Q ss_pred EEEeCCCCeeee----eee--------------------EE-----eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 461 RFYNVSDNHLEL----DAE--------------------IC-----VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 461 ~iwd~~~~~~~~----~~~--------------------~~-----~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
++||+.+..... ... .. .......+...+++++|+| ++..+++++.||.|
T Consensus 907 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~g~~~g~i 985 (1249)
T 3sfz_A 907 RVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP-HLEYVAFGDEDGAI 985 (1249)
T ss_dssp EEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT-TSSEEEEEETTSCC
T ss_pred EEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC-CCCEEEEEcCCCCE
Confidence 999975321100 000 00 0000112346799999999 88999999999999
Q ss_pred EEEeCC---------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCc-cccccccccccccCCcEEEecCCC
Q 005646 512 RILQGP---------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAH-DQAKTIRSLERFTTNASIAIPWCG 575 (686)
Q Consensus 512 ~iwd~~---------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~s~~g 575 (686)
++|+.. +.++++|+|++|++++.||.|++||+.+++.... .....+..+........++.+.+|
T Consensus 986 ~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg 1065 (1249)
T 3sfz_A 986 KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDG 1065 (1249)
T ss_dssp EEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSS
T ss_pred EEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCC
Confidence 999964 3478999999999999999999999998763211 111222222222224455556666
Q ss_pred C-cCCCCCCCCcccccCCCCCc--ccccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhccc
Q 005646 576 L-KCGNAEKEPQLHVSDDDSPE--NLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSC 652 (686)
Q Consensus 576 ~-~~~~~~~g~~l~~~~~~~~~--~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (686)
. ..|+..++..+..+..|... .++|+|| +..+++++.|+++.+|+.........+. +.. ...
T Consensus 1066 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~s~s~d~~v~iwd~~~~~~~~~l~---~h~--------~~v 1130 (1249)
T 3sfz_A 1066 TVKVWNVITGRIERDFTCHQGTVLSCAISSD----ATKFSSTSADKTAKIWSFDLLSPLHELK---GHN--------GCV 1130 (1249)
T ss_dssp EEEEEETTTTCCCEEEECCSSCCCCEEECSS----SSSCEEECCSSCCCEECSSSSSCSBCCC---CCS--------SCE
T ss_pred cEEEEECCCCceeEEEcccCCcEEEEEECCC----CCEEEEEcCCCcEEEEECCCcceeeeec---cCC--------CcE
Confidence 4 78999999998888766644 5578999 5667788999999999976655333221 000 011
Q ss_pred ccCccCCCCceEEEEecCCCeEeEEeec
Q 005646 653 LCTTSSHAWGLVIVTAGWDGRIRSFLNY 680 (686)
Q Consensus 653 ~~~~~~~~~g~~ivT~~~DG~Ir~w~~~ 680 (686)
.++ .++++|..||||+.||+|++|...
T Consensus 1131 ~~~-~~s~dg~~lat~~~dg~i~vwd~~ 1157 (1249)
T 3sfz_A 1131 RCS-AFSLDGILLATGDDNGEIRIWNVS 1157 (1249)
T ss_dssp EEE-EECSSSSEEEEEETTSCCCEEESS
T ss_pred EEE-EECCCCCEEEEEeCCCEEEEEECC
Confidence 122 345679999999999999999854
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=321.10 Aligned_cols=269 Identities=19% Similarity=0.366 Sum_probs=230.8
Q ss_pred cccCcce--eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+. .|++++.++++++.|+.|+||+...... ...+..|...|.+++|+|+|++|++|+.|+.|++|+
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-------VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-------EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-------ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 4555554 4567788999999999999999765432 345678999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+.... .+....+.+|.+.|.
T Consensus 126 ~~~~~~~----------------------------------------------------------~~~~~~~~~h~~~v~ 147 (340)
T 1got_B 126 LKTREGN----------------------------------------------------------VRVSRELAGHTGYLS 147 (340)
T ss_dssp TTTCSBS----------------------------------------------------------CEEEEEEECCSSCEE
T ss_pred CccCCCc----------------------------------------------------------ceeEEEecCCCccEE
Confidence 8764310 012456678999999
Q ss_pred EEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccC
Q 005646 359 DLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIR 436 (686)
Q Consensus 359 ~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~ 436 (686)
++.|++++.|++++.|++|++||+.+++++..+. |...|++++|+| ++++|++|+.|++|++||++++..+ .+..|.
T Consensus 148 ~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~ 226 (340)
T 1got_B 148 CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226 (340)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred EEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc
Confidence 9999999999999999999999999999999887 999999999999 9999999999999999999998876 455688
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
..|++++|+|++++|++|+.||+|++||+..++..... ....+...|++++|+| ++.+|++++.|+.|++||.
T Consensus 227 ~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~------~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY------SHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------CCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE------ccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEc
Confidence 99999999999999999999999999999887654211 1223345799999999 8899999999999999996
Q ss_pred C---------------cceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 517 P---------------NVIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 517 ~---------------~~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
. ..++++|+|++|+||+.|++|+|||
T Consensus 300 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 4 2477899999999999999999997
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=334.12 Aligned_cols=233 Identities=20% Similarity=0.374 Sum_probs=199.5
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
...+.+|.++|++++|+|++++|+||+.||+|+|||+.+++
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~--------------------------------------- 141 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD--------------------------------------- 141 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC---------------------------------------
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------------------------------------
Confidence 35678999999999999999999999999999999998765
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v 400 (686)
....+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+. |...|+++
T Consensus 142 -----------------------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v 198 (410)
T 1vyh_C 142 -----------------------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV 198 (410)
T ss_dssp -----------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEE
T ss_pred -----------------------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEE
Confidence 346677899999999999999 99999999999999999999998887 99999999
Q ss_pred EEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEee
Q 005646 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (686)
Q Consensus 401 ~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~ 479 (686)
+|+| ++++|++|+.|++|++||++++.++ .+..|...|.+++|+|+|++|++|+.||.|++||+.++.....
T Consensus 199 ~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~------ 271 (410)
T 1vyh_C 199 SIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE------ 271 (410)
T ss_dssp EECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE------
T ss_pred EEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeE------
Confidence 9999 9999999999999999999999876 5567889999999999999999999999999999988765431
Q ss_pred ccccCCCCCeEEEEEeCCC-------------------CCeEEEEeCCCcEEEEeCCc---------------ceeEcCC
Q 005646 480 SKKKAPCKRITGFQFLPQD-------------------SSKVMVSCADSQVRILQGPN---------------VIGKYKD 525 (686)
Q Consensus 480 ~~~~~~~~~I~~l~fsp~~-------------------~~~l~~~s~D~~I~iwd~~~---------------~~~~~~d 525 (686)
...|...|.+++|+|.. +.+|++++.|+.|++||..+ .++++|+
T Consensus 272 --~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~ 349 (410)
T 1vyh_C 272 --LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG 349 (410)
T ss_dssp --ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred --ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCC
Confidence 24567889999999942 45677777777777777542 3566677
Q ss_pred CCEEEEEeCCCcEEEEeCCCC
Q 005646 526 GKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 526 g~~l~sgs~Dg~V~iWd~~~~ 546 (686)
|++|++|+.||+|+|||+.++
T Consensus 350 g~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 350 GKFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp SSCEEEEETTTEEEEECCTTS
T ss_pred CCEEEEEeCCCeEEEEECCCC
Confidence 777777777777777777553
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=322.24 Aligned_cols=267 Identities=19% Similarity=0.342 Sum_probs=229.9
Q ss_pred cccCcceeeec------CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcE
Q 005646 201 DKQGEGERVRL------NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVV 274 (686)
Q Consensus 201 ~~~~~~~~~s~------~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I 274 (686)
.|...+.++++ ++..+++|+.|++|+||++...... ....+.+|...|.+++|++++.+|++++.|++|
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-----~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-----LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-----EEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-----eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 46666666554 3458999999999999998654322 124578999999999999999999999999999
Q ss_pred EEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC
Q 005646 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (686)
Q Consensus 275 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 354 (686)
++||+.+++. +..+..|.
T Consensus 105 ~lWd~~~~~~--------------------------------------------------------------~~~~~~~~ 122 (321)
T 3ow8_A 105 RLWDLENGKQ--------------------------------------------------------------IKSIDAGP 122 (321)
T ss_dssp EEEETTTTEE--------------------------------------------------------------EEEEECCT
T ss_pred EEEECCCCCE--------------------------------------------------------------EEEEeCCC
Confidence 9999988763 33445677
Q ss_pred CCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-
Q 005646 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD- 431 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~- 431 (686)
..+.+++|+|++ +|++++.|++|++||+.+++....+. |...|.+++|+| ++++|++|+.||.|++||+++++.+.
T Consensus 123 ~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~ 201 (321)
T 3ow8_A 123 VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHT 201 (321)
T ss_dssp TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 889999999999 99999999999999999999888877 888999999999 99999999999999999999998774
Q ss_pred EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 432 WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 432 ~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
+..|...|++++|+|++++|++|+.||.|++||+.+..+.. ....|...|.+++|+| ++..|++++.|+.|
T Consensus 202 ~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~--------~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v 272 (321)
T 3ow8_A 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG--------TLSGHASWVLNVAFCP-DDTHFVSSSSDKSV 272 (321)
T ss_dssp ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE--------EECCCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE--------EEcCCCCceEEEEECC-CCCEEEEEeCCCcE
Confidence 45688899999999999999999999999999998776432 1345778899999999 78999999999999
Q ss_pred EEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 512 RILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 512 ~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
++||..+ .++|+|++++|++++.||+|+|||+.
T Consensus 273 ~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 273 KVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999753 36788999999999999999999963
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=340.58 Aligned_cols=363 Identities=25% Similarity=0.360 Sum_probs=282.5
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
..+++++..+++++.++.|++|+.... ..+.+.+|...|.+++|+|++++|++++.|+.|++||. +++.+.
T Consensus 186 ~~~~~~~~~l~~~~~d~~v~~w~~~~~--------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~ 256 (577)
T 2ymu_A 186 VAFSPDGQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ 256 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECTTSC--------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEE
T ss_pred eeecCCCCEEEEEcCCCEEEEEeCCCc--------EEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEE
Confidence 456788889999999999999985432 12457789999999999999999999999999999996 455555
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~ 366 (686)
.+..+...+.++.+. +++...+. .+.+..+.+|+ ...+.+..+.+|...|.+++|+|++
T Consensus 257 ~~~~~~~~v~~v~~~-------------~d~~~l~~---~~~d~~i~~w~-----~~~~~~~~~~~h~~~v~~~~~~~~~ 315 (577)
T 2ymu_A 257 TLTGHSSSVNGVAFR-------------PDGQTIAS---ASDDKTVKLWN-----RNGQLLQTLTGHSSSVWGVAFSPDG 315 (577)
T ss_dssp EECCCSSCEEEEEEC-------------TTSSEEEE---EETTSCEEEEE-----TTSCEEEEECCCSSCEEEEEECTTS
T ss_pred EEecCCCCEEEEEEc-------------CCCCEEEE---EeCCCEEEEEe-----CCCcEEEEEecCCCCeEEEEECCCC
Confidence 555554444444433 33322221 12223333333 3346678889999999999999999
Q ss_pred -EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEc
Q 005646 367 -YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYR 445 (686)
Q Consensus 367 -~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~s 445 (686)
+|++++.|++|++||+..........|...|++++|+| ++++|++|+.||.|++||.....+.....|...|++++|+
T Consensus 316 ~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s 394 (577)
T 2ymu_A 316 QTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS 394 (577)
T ss_dssp SEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEEC
T ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEEC
Confidence 99999999999999987766554445999999999999 9999999999999999997655555777889999999999
Q ss_pred cCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC--------
Q 005646 446 PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-------- 517 (686)
Q Consensus 446 pdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~-------- 517 (686)
|+|++|++++.|+.|++||.....+. ....|...|++++|+| ++.+|++++.|+.|++||..
T Consensus 395 ~dg~~l~~~~~d~~v~~~~~~~~~~~---------~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~~~~~~~~ 464 (577)
T 2ymu_A 395 PDGQTIASASDDKTVKLWNRNGQLLQ---------TLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNGQLLQTLT 464 (577)
T ss_dssp TTSSCEEEEETTSEEEEECTTCCEEE---------EEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCEEE---------EecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECCCCEEEEEc
Confidence 99999999999999999997543211 1245678899999999 78999999999999999853
Q ss_pred ------cceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccC-CcEEEecCCCC-----------cCC
Q 005646 518 ------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTT-NASIAIPWCGL-----------KCG 579 (686)
Q Consensus 518 ------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~s~~g~-----------~~~ 579 (686)
+.++++|++++|++++.|+.|+|||... + .++.+..+.. ...++|+++|. ++|
T Consensus 465 ~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~--------~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw 535 (577)
T 2ymu_A 465 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q--------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535 (577)
T ss_dssp CCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C--------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C--------EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEE
Confidence 2478999999999999999999999643 2 2233333333 44555555543 578
Q ss_pred CCCCCCcccccCCCCCc--ccccCCCccccCccccccCCCCCCCCCC
Q 005646 580 NAEKEPQLHVSDDDSPE--NLAFAPARFSLGQEYVFESFPKGCATWP 624 (686)
Q Consensus 580 ~~~~g~~l~~~~~~~~~--~~~~spd~~~~~~~~~~~s~d~~~~~W~ 624 (686)
+. ++..+..+.+|... .++|+|| +..+++++.|+++++|+
T Consensus 536 d~-~~~~~~~~~~h~~~v~~~~fs~d----g~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 536 NR-NGQLLQTLTGHSSSVWGVAFSPD----GQTIASASSDKTVKLWN 577 (577)
T ss_dssp CT-TSCEEEEEECCSSCEEEEEECTT----SSCEEEEETTSCEEEEC
T ss_pred eC-CCCEEEEEcCCCCCEEEEEEcCC----CCEEEEEeCCCEEEEeC
Confidence 84 68888888887765 4679999 56778889999999996
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=316.74 Aligned_cols=233 Identities=21% Similarity=0.392 Sum_probs=202.9
Q ss_pred eecccCCceEEEEEeeC----CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeecccccee
Q 005646 245 EIQAHDGSILTMKFSPD----GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspd----g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (686)
.+++|.+.|++++|+|+ +.+|+||+.|++|+||++.++..
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~------------------------------------ 70 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL------------------------------------ 70 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE------------------------------------
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe------------------------------------
Confidence 45689999999999984 67999999999999999976541
Q ss_pred EEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeE
Q 005646 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVT 398 (686)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~ 398 (686)
.....+.+|...|.+++|++++ ++++++.|++|++||+.+++++..+. |...+.
T Consensus 71 ------------------------~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~ 126 (321)
T 3ow8_A 71 ------------------------DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW 126 (321)
T ss_dssp ------------------------EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC
T ss_pred ------------------------eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE
Confidence 1234567899999999999999 99999999999999999999998887 888999
Q ss_pred EEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE
Q 005646 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (686)
Q Consensus 399 ~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~ 477 (686)
+++|+| ++++|++|+.||.|++||+++++.. .+..+...|.+++|+|+|++|++|+.||.|++||+.++++...
T Consensus 127 ~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~---- 201 (321)
T 3ow8_A 127 TLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT---- 201 (321)
T ss_dssp CEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE----
T ss_pred EEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE----
Confidence 999999 9999999999999999999988766 4556778899999999999999999999999999998875432
Q ss_pred eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 478 ~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
...|...|++++|+| ++.+|++++.|+.|++||..+ .++|+|++++|++|+.|++|+|||
T Consensus 202 ----~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd 276 (321)
T 3ow8_A 202 ----LEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276 (321)
T ss_dssp ----ECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ----EcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 245678899999999 788999999999999999642 367899999999999999999999
Q ss_pred CCCCC
Q 005646 543 CIGHE 547 (686)
Q Consensus 543 ~~~~~ 547 (686)
+.+++
T Consensus 277 ~~~~~ 281 (321)
T 3ow8_A 277 VGTRT 281 (321)
T ss_dssp TTTTE
T ss_pred CCCCE
Confidence 97654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-37 Score=322.24 Aligned_cols=276 Identities=17% Similarity=0.203 Sum_probs=216.3
Q ss_pred CcceeeecCCCccceeeccceEEEEEcCCcc----ccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEe
Q 005646 204 GEGERVRLNEEDAMFCSKVQRVKVYHCKKRS----KELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (686)
Q Consensus 204 ~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~----~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~ 279 (686)
....+|+++|..+++++ ++++++|+..... ..............|...|.+++|+|++ +|++|+.||+|+|||+
T Consensus 33 v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~ 110 (344)
T 4gqb_B 33 LEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWEL 110 (344)
T ss_dssp EEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEec
Confidence 34567888888877766 7777777532110 0000111112234577889999999985 7889999999999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.+++.+..+ ...+.+|.+.|.+
T Consensus 111 ~~~~~~~~~----------------------------------------------------------~~~~~~H~~~V~~ 132 (344)
T 4gqb_B 111 DENETLIVS----------------------------------------------------------KFCKYEHDDIVST 132 (344)
T ss_dssp CTTSSCEEE----------------------------------------------------------EEEEECCSSCEEE
T ss_pred cCCCceeEe----------------------------------------------------------eccccCCCCCEEE
Confidence 887633211 1334689999999
Q ss_pred EEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe---c
Q 005646 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV---D 434 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~---~ 434 (686)
++|+|++ +|++|+.|++|++||+.+++++..+. |...|++++|+|.+..+|++|+.|++|++||+++++..... .
T Consensus 133 v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 212 (344)
T 4gqb_B 133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA 212 (344)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce
Confidence 9999999 99999999999999999999999998 99999999999944468999999999999999998876544 3
Q ss_pred cCCcEEEEEEccC-CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 435 IRQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 435 ~~~~V~~v~~spd-g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
+...+++++|+|+ +++|++|+.||+|++||++++++... ...|...|++++|+|+...+|++++.|++|+|
T Consensus 213 ~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~--------~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~v 284 (344)
T 4gqb_B 213 PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS--------SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAV 284 (344)
T ss_dssp -CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE--------EECCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred eeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE--------EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEE
Confidence 4557999999994 56889999999999999998775432 34577889999999955578999999999999
Q ss_pred EeCCc--------------ceeEcCCCC-EEEEEeCCCcEEEEeCCCCC
Q 005646 514 LQGPN--------------VIGKYKDGK-HIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 514 wd~~~--------------~~~~~~dg~-~l~sgs~Dg~V~iWd~~~~~ 547 (686)
||..+ .++|+|+++ +|+|||.|++|++|++.+..
T Consensus 285 wd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 285 LDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp ECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 99653 478999886 67799999999999998765
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=315.89 Aligned_cols=272 Identities=17% Similarity=0.332 Sum_probs=223.9
Q ss_pred ecccCcceeeecC--C-CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 005646 200 VDKQGEGERVRLN--E-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (686)
Q Consensus 200 ~~~~~~~~~~s~~--~-~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~v 276 (686)
..|...+.++.+. + +.+++|+.|++|++|++....... ......+.+|...|++++|+|+|++|+||+.|++|+|
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~--~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~ 91 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF--GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE--EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc--cccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE
Confidence 4577777665543 3 679999999999999986432211 1223568899999999999999999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.+++ .+..+.+|...
T Consensus 92 wd~~~~~--------------------------------------------------------------~~~~~~~h~~~ 109 (319)
T 3frx_A 92 WDVATGE--------------------------------------------------------------TYQRFVGHKSD 109 (319)
T ss_dssp EETTTTE--------------------------------------------------------------EEEEEECCSSC
T ss_pred EECCCCC--------------------------------------------------------------eeEEEccCCCc
Confidence 9998876 34556789999
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeec-----CCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPV-----DDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~-----~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
|.+++|+|++ +|++++.|++|++||+..........|...|.+++|+|. ++.+|++++.|++|++||+++.+..
T Consensus 110 v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 189 (319)
T 3frx_A 110 VMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189 (319)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh
Confidence 9999999999 999999999999999975444333449999999999983 2348999999999999999998866
Q ss_pred -EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCC
Q 005646 431 -DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (686)
Q Consensus 431 -~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~ 509 (686)
.+..|...|++++|+|+|++|++|+.||.|++||+.+.+...... +...|.+++|+| ++..+++++. .
T Consensus 190 ~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~v~~~~~sp-~~~~la~~~~-~ 258 (319)
T 3frx_A 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS---------AQDEVFSLAFSP-NRYWLAAATA-T 258 (319)
T ss_dssp EEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE---------CCSCEEEEEECS-SSSEEEEEET-T
T ss_pred eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec---------CCCcEEEEEEcC-CCCEEEEEcC-C
Confidence 566789999999999999999999999999999999887543221 235799999999 7777777665 4
Q ss_pred cEEEEeCC-----------------------cceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 510 QVRILQGP-----------------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 510 ~I~iwd~~-----------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.+++|+.. ..++|+|||++|++|+.||.|+|||+.+.
T Consensus 259 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 259 GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 59999743 13689999999999999999999998763
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=319.98 Aligned_cols=276 Identities=20% Similarity=0.335 Sum_probs=223.9
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
..+|++++..+++|+.|+.|+||+......... .....+|...|++++|+|+|++||+|+.|++|+||++.++..
T Consensus 21 ~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~- 95 (345)
T 3fm0_A 21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK----SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF- 95 (345)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEEEETTEEEEE----EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E-
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCCCcceee----eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe-
Confidence 367888999999999999999999865422111 112368999999999999999999999999999999876431
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
+.+..+.+|...|.+++|+|+
T Consensus 96 -----------------------------------------------------------~~~~~~~~h~~~v~~v~~sp~ 116 (345)
T 3fm0_A 96 -----------------------------------------------------------ECVTTLEGHENEVKSVAWAPS 116 (345)
T ss_dssp -----------------------------------------------------------EEEEEECCCSSCEEEEEECTT
T ss_pred -----------------------------------------------------------EEEEEccCCCCCceEEEEeCC
Confidence 134567889999999999999
Q ss_pred C-EEEEEECCCcEEEEECCCCe---eeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE---EEeccCC
Q 005646 366 N-YLLSASIDKTVRLWRVGNDH---CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV---DWVDIRQ 437 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~---~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~---~~~~~~~ 437 (686)
+ +|++++.|++|++||+.++. ++..+. |...|++++|+| ++++|++|+.|++|++||++++... .+.+|..
T Consensus 117 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~ 195 (345)
T 3fm0_A 117 GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHES 195 (345)
T ss_dssp SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS
T ss_pred CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC
Confidence 9 99999999999999998763 455555 999999999999 9999999999999999999887533 5667899
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee-------ee-EEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCC
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD-------AE-ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~-------~~-~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~ 509 (686)
.|++++|+|+|++|++|+.||+|++||......... .. .........|...|.+++|+| ++..|++++.|+
T Consensus 196 ~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~ 274 (345)
T 3fm0_A 196 TVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ-LTGALATACGDD 274 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT-TTCCEEEEETTS
T ss_pred ceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec-CCCEEEEEeCCC
Confidence 999999999999999999999999999632211000 00 011112234778899999999 788999999999
Q ss_pred cEEEEeCC------------------------cceeEcCCC-CEEEEEeCCCcEEEEeCCCCC
Q 005646 510 QVRILQGP------------------------NVIGKYKDG-KHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 510 ~I~iwd~~------------------------~~~~~~~dg-~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.|++|+.. +.++|+|++ .+||||+.||+|+||++.+++
T Consensus 275 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 275 AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred eEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 99999742 246789987 599999999999999998876
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-36 Score=339.06 Aligned_cols=425 Identities=15% Similarity=0.120 Sum_probs=295.4
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCc-eEEEEEee--CCCEEEEEeCCCcEEEEEeec
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGS-ILTMKFSP--DGQYLASAGDDGVVRLWQVVE 281 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fsp--dg~~Lasgs~Dg~I~vWd~~~ 281 (686)
...+|+++++++++++ ++.|+||++...... ......+.+|... |++++|+| ++++||+|+.||.|+|||+.+
T Consensus 22 ~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~---~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~ 97 (615)
T 1pgu_A 22 THLSYDPTTNAIAYPC-GKSAFVRCLDDGDSK---VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 97 (615)
T ss_dssp CCCEEETTTTEEEEEE-TTEEEEEECCSSCCS---SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred eEEEECCCCCEEEEec-CCeEEEEECCCCCCc---cccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCC
Confidence 3466788888999888 889999998754111 0123568899999 99999999 999999999999999999985
Q ss_pred C--------eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec-cCCceEEEeCCccccccCCCeEEecc
Q 005646 282 D--------ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR-TSESACVVFPPKVFRILEKPLHEFHG 352 (686)
Q Consensus 282 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (686)
+ ..+..+..+...+.++ .+.+++...+..... .....+.+|+ ..+.+..+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~v~~~-------------~~s~~~~~l~~~~~~~~~~~~v~~~d------~~~~~~~~~~ 158 (615)
T 1pgu_A 98 DKESNSVEVNVKSEFQVLAGPISDI-------------SWDFEGRRLCVVGEGRDNFGVFISWD------SGNSLGEVSG 158 (615)
T ss_dssp EGGGTEEEEEEEEEEECCSSCEEEE-------------EECTTSSEEEEEECCSSCSEEEEETT------TCCEEEECCS
T ss_pred CcccccccccccchhhcccccEEEE-------------EEeCCCCEEEEeccCCCCccEEEEEE------CCCcceeeec
Confidence 5 4444444444444344 344433333222211 1113444444 2356788899
Q ss_pred CCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCC---CeEEEEEeecC-CCEEEEEEcCCcEEEEecC
Q 005646 353 HSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSN---YVTCVHFNPVD-DNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 353 h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~---~V~~v~fsp~~-~~~l~sgs~Dg~V~iwd~~ 425 (686)
|...|.+++|+|++ +|++++.|+.|++||+.+++++..+. |.. .|++++|+| + +++|++++.||.|++||++
T Consensus 159 ~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 159 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETT
T ss_pred CCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECC
Confidence 99999999999998 79999999999999999999999888 888 999999999 7 9999999999999999999
Q ss_pred CCcEEEEe-----ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE-----------------------
Q 005646 426 SCHVVDWV-----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC----------------------- 477 (686)
Q Consensus 426 ~~~~~~~~-----~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~----------------------- 477 (686)
+++.+... .|...|.+++|+ ++++|++++.||.|++||+.+++........
T Consensus 238 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 316 (615)
T 1pgu_A 238 SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 316 (615)
T ss_dssp TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEE
T ss_pred CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEE
Confidence 99988766 789999999999 9999999999999999999877654321110
Q ss_pred --------------eeccccCCCCCeEEEEEeCC--------------------------------CCCeEEEEeCCCcE
Q 005646 478 --------------VHSKKKAPCKRITGFQFLPQ--------------------------------DSSKVMVSCADSQV 511 (686)
Q Consensus 478 --------------~~~~~~~~~~~I~~l~fsp~--------------------------------~~~~l~~~s~D~~I 511 (686)
.......|...|++++| |+ ++..+++++.|+.|
T Consensus 317 ~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i 395 (615)
T 1pgu_A 317 LDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTL 395 (615)
T ss_dssp TTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEE
T ss_pred CCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCE
Confidence 01112234444555544 31 24556666666666
Q ss_pred EEEeCCc--------ceeEcCC--------------------------------------CCEEEEEeC-CCcEEEEeCC
Q 005646 512 RILQGPN--------VIGKYKD--------------------------------------GKHIVSAGE-DSNVYMWNCI 544 (686)
Q Consensus 512 ~iwd~~~--------~~~~~~d--------------------------------------g~~l~sgs~-Dg~V~iWd~~ 544 (686)
++|+..+ .++++|+ +++|++++. |+.|++||+.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~ 475 (615)
T 1pgu_A 396 KVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLS 475 (615)
T ss_dssp EETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETT
T ss_pred EEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECC
Confidence 6665432 1122221 667777777 8888888877
Q ss_pred CCCCCCccccccccccccccC-CcEEEecCCCC-----------cCCCCCCCCcccccCC-CC--CcccccCC-------
Q 005646 545 GHEEPAHDQAKTIRSLERFTT-NASIAIPWCGL-----------KCGNAEKEPQLHVSDD-DS--PENLAFAP------- 602 (686)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~s~~g~-----------~~~~~~~g~~l~~~~~-~~--~~~~~~sp------- 602 (686)
++... . ..+..+.. ...++++.+|. .+|+..++..+..+.. |. ...++|+|
T Consensus 476 ~~~~~------~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~ 548 (615)
T 1pgu_A 476 DLEVS------F-DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANE 548 (615)
T ss_dssp EEEEE------E-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-----
T ss_pred Ccccc------c-cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccc
Confidence 64311 0 11112222 33444444432 6899999999888775 54 34567899
Q ss_pred ---CccccCccccccCCCCCCCCCCCCcCC-CccccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEe
Q 005646 603 ---ARFSLGQEYVFESFPKGCATWPEEKLP-ALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 678 (686)
Q Consensus 603 ---d~~~~~~~~~~~s~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~ 678 (686)
+ +..+++++.|+.+.+|+.+... ....+ ..|. ....++ .++++|. |+||+.||+|++|+
T Consensus 549 ~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~h~----~~v~~l-~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 549 EEIE----EDLVATGSLDTNIFIYSVKRPMKIIKAL-------NAHK----DGVNNL-LWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp -CCS----CCEEEEEETTSCEEEEESSCTTCCEEET-------TSST----TCEEEE-EEEETTE-EEEEETTSCEEEEE
T ss_pred cccC----CCEEEEEcCCCcEEEEECCCCceechhh-------hcCc----cceEEE-EEcCCCC-eEEecCCceEEEEe
Confidence 7 5677788999999999977652 11111 1110 111222 3445688 99999999999997
Q ss_pred e
Q 005646 679 N 679 (686)
Q Consensus 679 ~ 679 (686)
.
T Consensus 612 ~ 612 (615)
T 1pgu_A 612 V 612 (615)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=316.35 Aligned_cols=275 Identities=17% Similarity=0.267 Sum_probs=221.1
Q ss_pred eecccCcceeeec--------CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC
Q 005646 199 VVDKQGEGERVRL--------NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD 270 (686)
Q Consensus 199 ~~~~~~~~~~~s~--------~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 270 (686)
...|...+.++.+ ++..+++|+.|++|+||++...............+.+|...|++++|+|++.+|+||+.
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~ 96 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC
Confidence 3456666766643 67789999999999999986543211112223568899999999999999999999999
Q ss_pred CCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe
Q 005646 271 DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (686)
Q Consensus 271 Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (686)
|++|+|||+.+++ .+..+
T Consensus 97 D~~v~lwd~~~~~--------------------------------------------------------------~~~~~ 114 (343)
T 2xzm_R 97 DKTLRLWDLRTGT--------------------------------------------------------------TYKRF 114 (343)
T ss_dssp TSEEEEEETTSSC--------------------------------------------------------------EEEEE
T ss_pred CCcEEEEECCCCc--------------------------------------------------------------EEEEE
Confidence 9999999998765 34556
Q ss_pred ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEe---eCCCCeEEEEEeecCC----------CEEEEEEcC
Q 005646 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF---PHSNYVTCVHFNPVDD----------NYFISGSID 416 (686)
Q Consensus 351 ~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~---~h~~~V~~v~fsp~~~----------~~l~sgs~D 416 (686)
.+|...|.+++|+|++ +|++++.|++|++||+......... .|...|.+++|+| ++ .+|++++.|
T Consensus 115 ~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d 193 (343)
T 2xzm_R 115 VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWD 193 (343)
T ss_dssp ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETT
T ss_pred cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCC
Confidence 7899999999999999 9999999999999999854443333 3889999999999 55 799999999
Q ss_pred CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 417 GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 417 g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
|+|++||........+..|...|++++|+|+|++|++|+.||.|++||+........ .. .+...|.+++|+|
T Consensus 194 ~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~---~~-----~~~~~v~~v~~sp 265 (343)
T 2xzm_R 194 GRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR---EF-----DAGSTINQIAFNP 265 (343)
T ss_dssp SEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE---EE-----ECSSCEEEEEECS
T ss_pred CEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce---ee-----cCCCcEEEEEECC
Confidence 999999965544556778999999999999999999999999999999954332111 01 1235699999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCc----------------------------ceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 497 QDSSKVMVSCADSQVRILQGPN----------------------------VIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 497 ~~~~~l~~~s~D~~I~iwd~~~----------------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
++.++ +++.|+.|++|+..+ .++|+|+|++|++|+.||.|++|++.++
T Consensus 266 -~~~~l-a~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 266 -KLQWV-AVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp -SSCEE-EEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred -CCCEE-EEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 55555 466788999998531 3678999999999999999999998764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-36 Score=313.76 Aligned_cols=284 Identities=20% Similarity=0.275 Sum_probs=215.5
Q ss_pred eecccCcceeeecCCCccceeeccceEEEEEcCCccccccccccCcee-c-ccCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 005646 199 VVDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEI-Q-AHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (686)
Q Consensus 199 ~~~~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l-~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~v 276 (686)
...|...+.++.++++.+++|+.|+.|+||++....... ...+ . +|...|++++|+|++++||+|+.|++|+|
T Consensus 10 ~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~-----~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTL-----IDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp EECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEE-----EEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEE-----EEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 346777888888888899999999999999987532211 1223 3 39999999999999999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+....... ...+++..+.+|...
T Consensus 85 w~~~~~~~~~-------------------------------------------------------~~~~~~~~~~~h~~~ 109 (330)
T 2hes_X 85 WAKEESADRT-------------------------------------------------------FEMDLLAIIEGHENE 109 (330)
T ss_dssp EEC--------------------------------------------------------------CCCEEEEEEC----C
T ss_pred EEcccCcCcc-------------------------------------------------------ccceeEEEEcCCCCc
Confidence 9986432000 000235667899999
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCC----CeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC--c
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGN----DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC--H 428 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~----~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~--~ 428 (686)
|.+++|+|++ +|++++.|++|++||+.. .+++..+. |...|++++|+| ++.+|++|+.|++|++||+.++ +
T Consensus 110 V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~ 188 (330)
T 2hes_X 110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWE 188 (330)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCee
Confidence 9999999999 999999999999999943 25666666 999999999999 9999999999999999999876 3
Q ss_pred EE-EEeccCCcEEEEEEccC--CCEEEEEecCCcEEEEeCCCCeeeeeeeE-EeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 429 VV-DWVDIRQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLELDAEI-CVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 429 ~~-~~~~~~~~V~~v~~spd--g~~l~~gs~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
++ .+..|...|.+++|+|+ +.+|++|+.|++|++||+........... ........|...|++++|++ + ..|++
T Consensus 189 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~-~~l~s 266 (330)
T 2hes_X 189 CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-N-GLIAS 266 (330)
T ss_dssp EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-T-SCEEE
T ss_pred EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-C-CEEEE
Confidence 33 55678999999999998 77899999999999999865321110111 11111233778899999997 3 48999
Q ss_pred EeCCCcEEEEeCCc-------------------ceeEcC--CCCEEEEEeCCCcEEEEeCCC
Q 005646 505 SCADSQVRILQGPN-------------------VIGKYK--DGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 505 ~s~D~~I~iwd~~~-------------------~~~~~~--dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
++.|+.|++|+..+ .++++| ++++|+||+.||+|+||++..
T Consensus 267 ~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 267 VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999999998421 245667 689999999999999999865
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=310.01 Aligned_cols=236 Identities=20% Similarity=0.324 Sum_probs=203.0
Q ss_pred CceecccCCceEEEEEeeCC-CEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 243 GQEIQAHDGSILTMKFSPDG-QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
..+|.+|.+.|++++|+|++ ++|+||+.|++|++|++.......
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~----------------------------------- 54 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF----------------------------------- 54 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE-----------------------------------
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc-----------------------------------
Confidence 35688999999999999964 899999999999999986532100
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEE
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTC 399 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~ 399 (686)
..++..+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|.+
T Consensus 55 ----------------------~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~ 112 (319)
T 3frx_A 55 ----------------------GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 112 (319)
T ss_dssp ----------------------EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred ----------------------cccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEE
Confidence 12467788999999999999999 99999999999999999999998887 9999999
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccC------CCEEEEEecCCcEEEEeCCCCeeeee
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPD------GQGGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spd------g~~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
++|+| ++.+|++|+.|++|++||++...+..+..|...|.+++|.|. +..+++++.|+.|++||+.+.+...
T Consensus 113 ~~~~~-~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~- 190 (319)
T 3frx_A 113 VDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA- 190 (319)
T ss_dssp EEECT-TSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE-
T ss_pred EEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe-
Confidence 99999 999999999999999999988777788889999999999995 4589999999999999998876432
Q ss_pred eeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc--------------ceeEcCCCCEEEEEeCCCcEE
Q 005646 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--------------VIGKYKDGKHIVSAGEDSNVY 539 (686)
Q Consensus 474 ~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs~Dg~V~ 539 (686)
....|...|++++|+| ++.+|++++.|+.|++||..+ .++|+|++.+|++++.+ .++
T Consensus 191 -------~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~ 261 (319)
T 3frx_A 191 -------DFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIK 261 (319)
T ss_dssp -------EECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEE
T ss_pred -------eecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcE
Confidence 1345778999999999 788999999999999998653 36788899988888755 489
Q ss_pred EEeCCCC
Q 005646 540 MWNCIGH 546 (686)
Q Consensus 540 iWd~~~~ 546 (686)
+|+++.+
T Consensus 262 v~~~~~~ 268 (319)
T 3frx_A 262 VFSLDPQ 268 (319)
T ss_dssp EEEETTE
T ss_pred EEEeCcC
Confidence 9988754
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=312.84 Aligned_cols=238 Identities=23% Similarity=0.334 Sum_probs=202.2
Q ss_pred CceecccCC-ceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 243 GQEIQAHDG-SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 243 ~~~l~~H~~-~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
.+++.+|.. .|++++|+|+|++||||+.|++|+|||+.++.....
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~---------------------------------- 53 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK---------------------------------- 53 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE----------------------------------
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee----------------------------------
Confidence 356788988 999999999999999999999999999987642110
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCC--eeeeEee-CCCCe
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND--HCLRVFP-HSNYV 397 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~--~~~~~~~-h~~~V 397 (686)
.....+|...|.+++|+|++ +|++++.|++|+|||+..+ +++..+. |...|
T Consensus 54 -------------------------~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v 108 (345)
T 3fm0_A 54 -------------------------SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEV 108 (345)
T ss_dssp -------------------------EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCE
T ss_pred -------------------------eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCc
Confidence 11235799999999999999 9999999999999999876 4566666 99999
Q ss_pred EEEEEeecCCCEEEEEEcCCcEEEEecCCCcE---E-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee
Q 005646 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV---V-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 398 ~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~---~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
++++|+| ++++|++|+.|++|++||+.++.. + .+..|...|++++|+|++++|++|+.|+.|++||+..+.....
T Consensus 109 ~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~ 187 (345)
T 3fm0_A 109 KSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC 187 (345)
T ss_dssp EEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEE
T ss_pred eEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEE
Confidence 9999999 999999999999999999987642 2 4556888999999999999999999999999999987654321
Q ss_pred eeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC-------------------------------cceeE
Q 005646 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-------------------------------NVIGK 522 (686)
Q Consensus 474 ~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~-------------------------------~~~~~ 522 (686)
. ....|...|++++|+| ++.+|++++.|++|++|+.. ..+++
T Consensus 188 ~------~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 260 (345)
T 3fm0_A 188 A------TLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW 260 (345)
T ss_dssp E------EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEE
T ss_pred E------EecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEE
Confidence 1 2345778999999999 88999999999999999841 13678
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 523 YKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 523 ~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++++.+|++++.|+.|++|+.....
T Consensus 261 ~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 261 CQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp CTTTCCEEEEETTSCEEEEEECTTS
T ss_pred ecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 8899999999999999999987654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=307.72 Aligned_cols=266 Identities=20% Similarity=0.294 Sum_probs=221.3
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+ .+|++++.++++++.|+.|+||++..... ...+.+|..+|.+++|+|++++|++|+.|++|++||
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE-------VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-------eEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 455555 56778888999999999999999865432 356778999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+++ .+..+.+|...|.
T Consensus 84 ~~~~~--------------------------------------------------------------~~~~~~~h~~~v~ 101 (304)
T 2ynn_A 84 YNTGE--------------------------------------------------------------KVVDFEAHPDYIR 101 (304)
T ss_dssp TTTCC--------------------------------------------------------------EEEEEECCSSCEE
T ss_pred CCCCc--------------------------------------------------------------EEEEEeCCCCcEE
Confidence 98765 3456678999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCC-eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE--EEe
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWV 433 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~-~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~--~~~ 433 (686)
+++|+|++ +|++|+.|++|++||+.++ .+...+. |...|++++|+|.++.+|++|+.|++|++||+++.... ...
T Consensus 102 ~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~ 181 (304)
T 2ynn_A 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181 (304)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC
T ss_pred EEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc
Confidence 99999999 9999999999999999887 4555565 99999999999966789999999999999999876643 223
Q ss_pred ccCCcEEEEEEcc--CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 434 DIRQIVTAVCYRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 434 ~~~~~V~~v~~sp--dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
.+...+..++|+| ++++|++|+.||+|++||+.++++... ...|...|+.++|+| ++..|++++.|+.|
T Consensus 182 ~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~--------~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i 252 (304)
T 2ynn_A 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT--------LEGHMSNVSFAVFHP-TLPIIISGSEDGTL 252 (304)
T ss_dssp CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE--------EECCSSCEEEEEECS-SSSEEEEEETTSCE
T ss_pred CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee--------eCCCCCCEEEEEECC-CCCEEEEEcCCCeE
Confidence 4567899999987 788999999999999999998875432 345778899999999 78899999999999
Q ss_pred EEEeCCc---------------ceeEcCCCC--EEEEEeCCCcEEEEeCCC
Q 005646 512 RILQGPN---------------VIGKYKDGK--HIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 512 ~iwd~~~---------------~~~~~~dg~--~l~sgs~Dg~V~iWd~~~ 545 (686)
++||..+ .++++|++. +|++|+.|| +.+|++.+
T Consensus 253 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 253 KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp EEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred EEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 9999653 256677775 577777654 77887765
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=307.61 Aligned_cols=235 Identities=15% Similarity=0.299 Sum_probs=205.6
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.++|.+|.+.|++++|+|++++|++|+.||+|+|||+.++.
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~--------------------------------------- 46 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV--------------------------------------- 46 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------------------------
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc---------------------------------------
Confidence 35688999999999999999999999999999999998765
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v 400 (686)
.+..+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+. |...|+++
T Consensus 47 -----------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 103 (304)
T 2ynn_A 47 -----------------------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103 (304)
T ss_dssp -----------------------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred -----------------------eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 234556788999999999999 99999999999999999999998887 99999999
Q ss_pred EEeecCCCEEEEEEcCCcEEEEecCCCcEE--EEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEE
Q 005646 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (686)
Q Consensus 401 ~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~ 477 (686)
+|+| ++++|++|+.|++|++||++++... .+..|...|++++|+| ++..|++|+.||+|++||+.........
T Consensus 104 ~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~--- 179 (304)
T 2ynn_A 104 AVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL--- 179 (304)
T ss_dssp EECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE---
T ss_pred EEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee---
Confidence 9999 9999999999999999999987433 4567889999999999 6789999999999999999776543211
Q ss_pred eeccccCCCCCeEEEEEeCC-CCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEE
Q 005646 478 VHSKKKAPCKRITGFQFLPQ-DSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 478 ~~~~~~~~~~~I~~l~fsp~-~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iW 541 (686)
...+...+..+.|+|. ++.+|++++.|+.|++||..+ .++++|++++|++|+.||+|+||
T Consensus 180 ----~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iW 255 (304)
T 2ynn_A 180 ----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255 (304)
T ss_dssp ----ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred ----ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 2235567999999874 567999999999999999653 36789999999999999999999
Q ss_pred eCCCCC
Q 005646 542 NCIGHE 547 (686)
Q Consensus 542 d~~~~~ 547 (686)
|+.+++
T Consensus 256 d~~~~~ 261 (304)
T 2ynn_A 256 NSSTYK 261 (304)
T ss_dssp ETTTCC
T ss_pred ECCCCc
Confidence 998865
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=312.57 Aligned_cols=273 Identities=20% Similarity=0.296 Sum_probs=229.2
Q ss_pred ecccCcce--eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 005646 200 VDKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (686)
Q Consensus 200 ~~~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW 277 (686)
..|...+. +|++++.++++|+.|+.|+||+...... .+.+..|...|.+++|+|+|.+||+|+.|+.+++|
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-------~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-------EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-------EEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-------ceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 35666664 5667788999999999999999765432 24566789999999999999999999999999999
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCe
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 357 (686)
++........ ......+.+|...|
T Consensus 134 ~~~~~~~~~~--------------------------------------------------------~~~~~~~~~h~~~v 157 (354)
T 2pbi_B 134 PLTFDKNENM--------------------------------------------------------AAKKKSVAMHTNYL 157 (354)
T ss_dssp ECCCCTTCCS--------------------------------------------------------GGGCEEEEECSSCE
T ss_pred EEeccccccc--------------------------------------------------------cccceeeeccCCcE
Confidence 9865321000 02345567899999
Q ss_pred eEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeec-CCCEEEEEEcCCcEEEEecCCCcEEE-Ee
Q 005646 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVVD-WV 433 (686)
Q Consensus 358 ~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~-~~~~l~sgs~Dg~V~iwd~~~~~~~~-~~ 433 (686)
.+++|+|++ .|++++.|++|++||+.+++++..+. |...|.+++|+|. ++++|++|+.||+|++||+++++++. +.
T Consensus 158 ~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~ 237 (354)
T 2pbi_B 158 SACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237 (354)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 999999999 99999999999999999999999887 9999999999883 35899999999999999999998774 45
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
.|...|++++|+|++++|++|+.|++|++||++..+.... .. ...+...+++++|+| ++.+|++++.|+.|++
T Consensus 238 ~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~-----~~-~~~~~~~~~~~~~s~-~g~~l~~g~~d~~i~v 310 (354)
T 2pbi_B 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI-----YS-KESIIFGASSVDFSL-SGRLLFAGYNDYTINV 310 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-----EC-CTTCCSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE-----Ec-CCCcccceeEEEEeC-CCCEEEEEECCCcEEE
Confidence 6889999999999999999999999999999988754321 11 122345689999999 8899999999999999
Q ss_pred EeCC---------------cceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 514 LQGP---------------NVIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 514 wd~~---------------~~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
||.. +.++|+|||++|++|+.||+|+||+
T Consensus 311 wd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 311 WDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9964 2478999999999999999999996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=318.82 Aligned_cols=256 Identities=16% Similarity=0.179 Sum_probs=185.6
Q ss_pred cceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC------CCcEEEEEeecCeeeeeec
Q 005646 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD------DGVVRLWQVVEDERLTEVD 289 (686)
Q Consensus 216 l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~------Dg~I~vWd~~~~~~~~~~~ 289 (686)
++.+..+.....|++.. ....+|+..|++++|+|||++||||+. |+.|++|+..++....
T Consensus 19 ~~~~~g~~~~~~w~~p~-----------~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~--- 84 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPV-----------TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE--- 84 (357)
T ss_dssp --------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG---
T ss_pred EEecCCCccccccCCCC-----------CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce---
Confidence 34445567778886532 223469999999999999999999998 6677777766554211
Q ss_pred cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEE
Q 005646 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL 369 (686)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~ 369 (686)
.......+|...|.+++|+|++.++
T Consensus 85 -------------------------------------------------------~~~~~~~~~~~~V~~~~~s~d~~~l 109 (357)
T 4g56_B 85 -------------------------------------------------------SLCTAGVQTEAGVTDVAWVSEKGIL 109 (357)
T ss_dssp -------------------------------------------------------GGCSEEEECSSCEEEEEEETTTEEE
T ss_pred -------------------------------------------------------eEecccCCCCCCEEEEEEcCCCCEE
Confidence 1223345688999999999999888
Q ss_pred EEECCCcEEEEECCCCeeeeE-----eeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEE
Q 005646 370 SASIDKTVRLWRVGNDHCLRV-----FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVC 443 (686)
Q Consensus 370 s~s~Dg~V~iWd~~~~~~~~~-----~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~ 443 (686)
+++.|++|+|||+.+++++.. ..|...|++++|+| ++++|++|+.|++|++||+++++.+ .+..|...|++++
T Consensus 110 ~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~ 188 (357)
T 4g56_B 110 VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA 188 (357)
T ss_dssp EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 899999999999998875432 23899999999999 9999999999999999999999877 4556889999999
Q ss_pred EccCCC-EEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc----
Q 005646 444 YRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---- 518 (686)
Q Consensus 444 ~spdg~-~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---- 518 (686)
|+|++. ++++++.||.|++||+.+++..... ....+...+++++|+|+++.+|++++.|+.|++||..+
T Consensus 189 ~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~ 262 (357)
T 4g56_B 189 ACPGKDTIFLSCGEDGRILLWDTRKPKPATRI------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA 262 (357)
T ss_dssp ECTTCSSCEEEEETTSCEEECCTTSSSCBCBC------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC
T ss_pred EccCCCceeeeeccCCceEEEECCCCceeeee------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe
Confidence 999885 7889999999999999887654321 12345577999999997777888899999999998642
Q ss_pred -----------ceeEcCCC-CEEEEEeCCCcEEEEeCCCCC
Q 005646 519 -----------VIGKYKDG-KHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 -----------~~~~~~dg-~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.++|+|++ ++|++|+.|++|+|||+.+++
T Consensus 263 ~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 263 QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 36788876 578899999999999987654
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=324.13 Aligned_cols=283 Identities=21% Similarity=0.333 Sum_probs=232.5
Q ss_pred cccCcce--eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+. +|+++++++++|+.|++|+||+...... ...+.+|...|.+++|+|+|++||+|+.|+.|+||+
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-------~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-------THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-------EEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-------ceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 4666664 5667888999999999999999765432 356788999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+...... .......+.+|.+.|.
T Consensus 137 ~~~~~~~~~-------------------------------------------------------~~~~~~~~~gh~~~v~ 161 (380)
T 3iz6_a 137 LSSQADRDG-------------------------------------------------------NMPVSRVLTGHKGYAS 161 (380)
T ss_dssp CCCCSSCCC-------------------------------------------------------SSTTCCBCCCCSSCCC
T ss_pred CCCCccccC-------------------------------------------------------CccceeeccCCCcceE
Confidence 875431000 0013345678999999
Q ss_pred EEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEe------eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC-CcE
Q 005646 359 DLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVF------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHV 429 (686)
Q Consensus 359 ~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~------~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-~~~ 429 (686)
++.|+|++ .|++|+.|++|++||+.+++++..+ .|...|.+++|+|.++++|++|+.|++|++||++. .+.
T Consensus 162 ~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~ 241 (380)
T 3iz6_a 162 SCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241 (380)
T ss_dssp CCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC
T ss_pred EEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc
Confidence 99999975 8999999999999999999998877 28899999999887889999999999999999984 343
Q ss_pred -EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 430 -VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 430 -~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
..+.+|...|++++|+|+|++|++|+.||+|++||+.+++........ ......+...|++++|+| ++.+|++++.|
T Consensus 242 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d 319 (380)
T 3iz6_a 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE-PDRNDNELPIVTSVAFSI-SGRLLFAGYSN 319 (380)
T ss_dssp CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC-CSSSCCSSCSCSEEEECS-SSSEEEEECTT
T ss_pred eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc-ccccccccCceEEEEECC-CCCEEEEEECC
Confidence 356679999999999999999999999999999999988754322110 011122334589999999 88999999999
Q ss_pred CcEEEEeCC-------------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 509 SQVRILQGP-------------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 509 ~~I~iwd~~-------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.|++||.. +.++++|+|++|+||+.|++|+||++...+
T Consensus 320 g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 320 GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 999999952 347899999999999999999999998754
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=311.80 Aligned_cols=232 Identities=14% Similarity=0.307 Sum_probs=200.1
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
.++.+|.+.|++++|+|++++||||+.||+|+|||..+++.
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~--------------------------------------- 98 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK--------------------------------------- 98 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------------------------------
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc---------------------------------------
Confidence 56889999999999999999999999999999999876542
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCC------eeeeEee-CCC
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND------HCLRVFP-HSN 395 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~------~~~~~~~-h~~ 395 (686)
.+.+..|...|.+++|+|++ +|++++.|+++++|++... .....+. |..
T Consensus 99 -----------------------~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~ 155 (354)
T 2pbi_B 99 -----------------------EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTN 155 (354)
T ss_dssp -----------------------EEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSS
T ss_pred -----------------------ceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCC
Confidence 33445688899999999999 9999999999999998654 2233344 999
Q ss_pred CeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEcc--CCCEEEEEecCCcEEEEeCCCCeeee
Q 005646 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRP--DGQGGIVGSMMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 396 ~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~sp--dg~~l~~gs~dg~i~iwd~~~~~~~~ 472 (686)
.|.+++|+| ++..|++++.|++|++||+.+++.+ .+..|...|.+++|+| +|++|++|+.||.|++||+.+++...
T Consensus 156 ~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~ 234 (354)
T 2pbi_B 156 YLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234 (354)
T ss_dssp CEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred cEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 999999999 8999999999999999999999877 4557889999999988 57899999999999999999876543
Q ss_pred eeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-----------------ceeEcCCCCEEEEEeCC
Q 005646 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-----------------VIGKYKDGKHIVSAGED 535 (686)
Q Consensus 473 ~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-----------------~~~~~~dg~~l~sgs~D 535 (686)
. ...|...|++++|+| ++..|++++.|+.|++||..+ .++|+|+|++|++|+.|
T Consensus 235 ~--------~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d 305 (354)
T 2pbi_B 235 A--------FETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND 305 (354)
T ss_dssp E--------ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred E--------ecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC
Confidence 1 245778899999999 788999999999999999642 36688899999999999
Q ss_pred CcEEEEeCCCCC
Q 005646 536 SNVYMWNCIGHE 547 (686)
Q Consensus 536 g~V~iWd~~~~~ 547 (686)
++|+|||+.+++
T Consensus 306 ~~i~vwd~~~~~ 317 (354)
T 2pbi_B 306 YTINVWDVLKGS 317 (354)
T ss_dssp SCEEEEETTTCS
T ss_pred CcEEEEECCCCc
Confidence 999999987654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=310.95 Aligned_cols=269 Identities=16% Similarity=0.340 Sum_probs=223.4
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+++++|.+.|++++|+|++++|+||+.||+|+|||+.+++
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~--------------------------------------- 88 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN--------------------------------------- 88 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC---------------------------------------
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC---------------------------------------
Confidence 35688999999999999999999999999999999987765
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCe----eeeEee-CCCC
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH----CLRVFP-HSNY 396 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~----~~~~~~-h~~~ 396 (686)
.+..+..|...|.+++|+|++ +|++++.|+.|++|++.+.. ....+. |.+.
T Consensus 89 -----------------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~ 145 (340)
T 1got_B 89 -----------------------KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY 145 (340)
T ss_dssp -----------------------EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSC
T ss_pred -----------------------cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCcc
Confidence 234556788999999999999 99999999999999998753 444444 9999
Q ss_pred eEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeee
Q 005646 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE 475 (686)
Q Consensus 397 V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~ 475 (686)
|.++.|+| ++ .+++++.|++|++||+.+++.+ .+..|...|++++|+|+++++++|+.||.|++||+.++.....
T Consensus 146 v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~-- 221 (340)
T 1got_B 146 LSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-- 221 (340)
T ss_dssp EEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE--
T ss_pred EEEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE--
Confidence 99999998 54 5899999999999999999877 4556889999999999999999999999999999988765431
Q ss_pred EEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-----------------ceeEcCCCCEEEEEeCCCcE
Q 005646 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-----------------VIGKYKDGKHIVSAGEDSNV 538 (686)
Q Consensus 476 ~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-----------------~~~~~~dg~~l~sgs~Dg~V 538 (686)
...|...|++++|+| ++..|++++.|+.|++||..+ .++|+|+|++|++|+.||.|
T Consensus 222 ------~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i 294 (340)
T 1got_B 222 ------FTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294 (340)
T ss_dssp ------ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ------EcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeE
Confidence 345778899999999 889999999999999999642 36788999999999999999
Q ss_pred EEEeCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCC
Q 005646 539 YMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPK 618 (686)
Q Consensus 539 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~ 618 (686)
++||+.+++ .+..+..+. .....++|+|| +..+++++.|+
T Consensus 295 ~vwd~~~~~--------~~~~~~~h~----------------------------~~v~~~~~s~d----g~~l~s~s~D~ 334 (340)
T 1got_B 295 NVWDALKAD--------RAGVLAGHD----------------------------NRVSCLGVTDD----GMAVATGSWDS 334 (340)
T ss_dssp EEEETTTCC--------EEEEEECCS----------------------------SCEEEEEECTT----SSCEEEEETTS
T ss_pred EEEEcccCc--------EeeEeecCC----------------------------CcEEEEEEcCC----CCEEEEEcCCc
Confidence 999987754 111121111 11234567888 55667888999
Q ss_pred CCCCCC
Q 005646 619 GCATWP 624 (686)
Q Consensus 619 ~~~~W~ 624 (686)
.+++|+
T Consensus 335 ~i~iWd 340 (340)
T 1got_B 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred cEEecC
Confidence 999996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=315.67 Aligned_cols=273 Identities=19% Similarity=0.268 Sum_probs=216.3
Q ss_pred cceeeecCCCccceeec------cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 205 EGERVRLNEEDAMFCSK------VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~------d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
...+|+++|.+|++++. |+.|++|+........ .......+|...|++++|+|++. +++++.||+|+|||
T Consensus 46 ~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~---~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd 121 (357)
T 4g56_B 46 GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE---SLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWE 121 (357)
T ss_dssp EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG---GGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC-
T ss_pred EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce---eEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEee
Confidence 34678899999999997 7789999765433211 11233557999999999999985 55678899999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+++.... ......+|...|.
T Consensus 122 ~~~~~~~~~----------------------------------------------------------~~~~~~~h~~~V~ 143 (357)
T 4g56_B 122 ILEKESLLV----------------------------------------------------------NKFAKYEHDDIVK 143 (357)
T ss_dssp -------CC----------------------------------------------------------CCEEECCCSSCEE
T ss_pred ccccceeEE----------------------------------------------------------EeeccCCCCCCEE
Confidence 987753211 1233457999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE---e
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW---V 433 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~---~ 433 (686)
+++|+|++ +|++++.|++|++||+.+++++..+. |...|++++|+|....+|++++.||+|++||+++++.... .
T Consensus 144 ~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~ 223 (357)
T 4g56_B 144 TLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC 223 (357)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence 99999999 99999999999999999999999988 9999999999994446899999999999999999876533 3
Q ss_pred ccCCcEEEEEEccC-CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 434 DIRQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 434 ~~~~~V~~v~~spd-g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
.+...+++++|+|+ +.+|++|+.|+.|++||+.+++.... ...|...|++++|+|++..+|++++.|++|+
T Consensus 224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~--------~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~ 295 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT--------SAVHSQNITGLAYSYHSSPFLASISEDCTVA 295 (357)
T ss_dssp TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE--------ECCCSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE--------EeccceeEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 45678999999997 56888999999999999988765431 2456688999999996667899999999999
Q ss_pred EEeCCc--------------ceeEcC-CCCEEEEEeCCCcEEEEeCCCCC
Q 005646 513 ILQGPN--------------VIGKYK-DGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 513 iwd~~~--------------~~~~~~-dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
|||..+ .++|+| ++++|+||+.||+|++|++....
T Consensus 296 iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 296 VLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 999653 478898 89999999999999999997644
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=354.91 Aligned_cols=198 Identities=12% Similarity=0.155 Sum_probs=162.8
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+ .+|++++.++|+|+.|+.|+||+...... .....|..+|++++|+| |++|++++.|++|+|||
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~--------~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV--------VIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLS 85 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE--------EEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEE
T ss_pred CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE--------EEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEE
Confidence 344444 56778888999999999999998654321 11224788999999999 88999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+++.+ ..+. |...|+
T Consensus 86 ~~~~~~~--------------------------------------------------------------~~~~-~~~~V~ 102 (902)
T 2oaj_A 86 LYSQKVL--------------------------------------------------------------TTVF-VPGKIT 102 (902)
T ss_dssp TTTCSEE--------------------------------------------------------------EEEE-CSSCEE
T ss_pred CCCCcEE--------------------------------------------------------------EEEc-CCCCEE
Confidence 9876532 2222 567899
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeee-----------eEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCL-----------RVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~-----------~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
+++|+|++ +|++|+.||+|++||+.++++. ..+. |.+.|++++|+|.+..+|++|+.||.| +||++
T Consensus 103 ~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~ 181 (902)
T 2oaj_A 103 SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV 181 (902)
T ss_dssp EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC
Confidence 99999999 9999999999999999998764 1122 889999999999446799999999999 99999
Q ss_pred CCcEEEEecc-------------------CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee
Q 005646 426 SCHVVDWVDI-------------------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 426 ~~~~~~~~~~-------------------~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
+++.+..... ...|++++|+|+|++|++|+.||+|++||+.++++.
T Consensus 182 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 182 ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 9987754432 367999999999999999999999999999876653
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=314.60 Aligned_cols=252 Identities=20% Similarity=0.343 Sum_probs=203.2
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeecc
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (686)
+|.+.|++++|+|||++||+|+ |+.++||++.+++.+..+..+..... .+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~-----------------~~------------ 111 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK-----------------DP------------ 111 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------------------
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccc-----------------cc------------
Confidence 6999999999999999999986 78999999998886665543211000 00
Q ss_pred CCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeec
Q 005646 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV 405 (686)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~ 405 (686)
. .........+...|.+++|+|++ +|++|+.|++|+|||+.+++++..+. |...|++++|+|
T Consensus 112 ----------~-----~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p- 175 (393)
T 1erj_A 112 ----------E-----NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP- 175 (393)
T ss_dssp ------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-
T ss_pred ----------c-----cccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-
Confidence 0 00001112355579999999999 99999999999999999999998887 999999999999
Q ss_pred CCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccC
Q 005646 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (686)
Q Consensus 406 ~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 484 (686)
++++|++|+.|++|++||+++++......+...+.+++|+| +|++|++|+.||.|++||+.++.+....... ......
T Consensus 176 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~-~~~~~~ 254 (393)
T 1erj_A 176 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE-NESGTG 254 (393)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-------CC
T ss_pred CCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc-ccCCCC
Confidence 99999999999999999999999888778888999999999 9999999999999999999887654322111 111246
Q ss_pred CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------------------ceeEcCCCCEEEEEeCCCc
Q 005646 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------------------VIGKYKDGKHIVSAGEDSN 537 (686)
Q Consensus 485 ~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------------------~~~~~~dg~~l~sgs~Dg~ 537 (686)
|...|++++|+| ++..|++++.|+.|++||..+ .+++++++++|++|+.|+.
T Consensus 255 h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~ 333 (393)
T 1erj_A 255 HKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 333 (393)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred CCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe
Confidence 788999999999 789999999999999998642 2567789999999999999
Q ss_pred EEEEeCCCCC
Q 005646 538 VYMWNCIGHE 547 (686)
Q Consensus 538 V~iWd~~~~~ 547 (686)
|++||+.+++
T Consensus 334 v~iwd~~~~~ 343 (393)
T 1erj_A 334 VLFWDKKSGN 343 (393)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCe
Confidence 9999988754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=300.97 Aligned_cols=233 Identities=30% Similarity=0.562 Sum_probs=198.5
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
..+.+|.+.|++++|+|++++|++|+.||.|++|++.+++
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~---------------------------------------- 56 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---------------------------------------- 56 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----------------------------------------
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----------------------------------------
Confidence 4678999999999999999999999999999999987654
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~ 401 (686)
....+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|.+++
T Consensus 57 ----------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 114 (312)
T 4ery_A 57 ----------------------FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 114 (312)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred ----------------------cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 234556799999999999999 99999999999999999999998887 999999999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeec
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~ 480 (686)
|+| ++++|++|+.||+|++||+++++.+ .+..|...|++++|+|++++|++++.||.|++||+.+++....
T Consensus 115 ~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~------- 186 (312)
T 4ery_A 115 FNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT------- 186 (312)
T ss_dssp ECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-------
T ss_pred EcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeE-------
Confidence 999 9999999999999999999998876 4456788999999999999999999999999999988764321
Q ss_pred cccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcce-----------------eE-cCCCCEEEEEeCCCcEEEEe
Q 005646 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI-----------------GK-YKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 481 ~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~-----------------~~-~~dg~~l~sgs~Dg~V~iWd 542 (686)
....+...+..++|+| ++.+|++++.|+.|++||..+.. .+ .+++++|++|+.||.|++||
T Consensus 187 ~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd 265 (312)
T 4ery_A 187 LIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265 (312)
T ss_dssp ECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEE
T ss_pred EeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEE
Confidence 1233456799999999 77888888888888888865321 11 24677888888888888888
Q ss_pred CCCCC
Q 005646 543 CIGHE 547 (686)
Q Consensus 543 ~~~~~ 547 (686)
+.+++
T Consensus 266 ~~~~~ 270 (312)
T 4ery_A 266 LQTKE 270 (312)
T ss_dssp TTTCC
T ss_pred CCCch
Confidence 77643
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=320.09 Aligned_cols=235 Identities=17% Similarity=0.380 Sum_probs=200.8
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+++++|.+.|++++|+|++++|+||+.||+|+|||+.+++
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~--------------------------------------- 99 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ--------------------------------------- 99 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE---------------------------------------
T ss_pred eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------------------------------------
Confidence 46788999999999999999999999999999999998765
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCe-------eeeEee-C
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-------CLRVFP-H 393 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~-------~~~~~~-h 393 (686)
....+.+|...|.+++|+|++ +|++++.|++|++||+.+.. ....+. |
T Consensus 100 -----------------------~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh 156 (380)
T 3iz6_a 100 -----------------------KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGH 156 (380)
T ss_dssp -----------------------EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCC
T ss_pred -----------------------cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCC
Confidence 234556799999999999999 99999999999999997532 233344 9
Q ss_pred CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe------ccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCC
Q 005646 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV------DIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 394 ~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~------~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~ 466 (686)
.+.|.+++|+|.++..|++|+.|++|++||+.+++.+... .|...|.+++|+| ++++|++|+.||+|++||++
T Consensus 157 ~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~ 236 (380)
T 3iz6_a 157 KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236 (380)
T ss_dssp SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETT
T ss_pred CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECC
Confidence 9999999999955678999999999999999999877544 5778899999987 88999999999999999997
Q ss_pred CCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC----------------------cceeEcC
Q 005646 467 DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP----------------------NVIGKYK 524 (686)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~----------------------~~~~~~~ 524 (686)
...... .....|...|++++|+| ++..|++++.|++|++||.. +.++|+|
T Consensus 237 ~~~~~~-------~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 237 ITSRAV-------RTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI 308 (380)
T ss_dssp TTCCCC-------EEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred CCCcce-------EEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC
Confidence 432111 11345778999999999 88999999999999999964 2467889
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCC
Q 005646 525 DGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 525 dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+|++|++|+.||.|+|||+..++
T Consensus 309 ~g~~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 309 SGRLLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp SSSEEEEECTTSCEEEEETTTCC
T ss_pred CCCEEEEEECCCCEEEEECCCCc
Confidence 99999999999999999987654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=310.29 Aligned_cols=302 Identities=22% Similarity=0.350 Sum_probs=220.9
Q ss_pred CceecccCCceEEEEE-----ee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccc
Q 005646 243 GQEIQAHDGSILTMKF-----SP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKE 316 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~f-----sp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (686)
.+.+.+|.+.|++++| ++ ++++|+||+.|++|+|||+.+.+.....
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~---------------------------- 65 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF---------------------------- 65 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS----------------------------
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc----------------------------
Confidence 3568899999999999 76 8999999999999999998764311000
Q ss_pred cceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CC
Q 005646 317 KISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HS 394 (686)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~ 394 (686)
..+...+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |.
T Consensus 66 ---------------------------~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~ 118 (343)
T 2xzm_R 66 ---------------------------GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ 118 (343)
T ss_dssp ---------------------------EEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCC
T ss_pred ---------------------------ccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence 12456678999999999999999 99999999999999999999998887 99
Q ss_pred CCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe---ccCCcEEEEEEccCC----------CEEEEEecCCcEE
Q 005646 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV---DIRQIVTAVCYRPDG----------QGGIVGSMMGDCR 461 (686)
Q Consensus 395 ~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~---~~~~~V~~v~~spdg----------~~l~~gs~dg~i~ 461 (686)
..|++++|+| ++++|++|+.|++|++||+......... .|...|.+++|+|++ .+|++++.||.|+
T Consensus 119 ~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 197 (343)
T 2xzm_R 119 SEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLK 197 (343)
T ss_dssp SCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEE
T ss_pred CcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEE
Confidence 9999999999 9999999999999999999865444433 577889999999987 7899999999999
Q ss_pred EEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEE
Q 005646 462 FYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 462 iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iW 541 (686)
+||... .... ....|...|++++|+| +|++|++|+.||.|+||
T Consensus 198 iwd~~~-~~~~--------~~~~h~~~v~~~~~s~----------------------------~g~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 198 VWNTNF-QIRY--------TFKAHESNVNHLSISP----------------------------NGKYIATGGKDKKLLIW 240 (343)
T ss_dssp EEETTT-EEEE--------EEECCSSCEEEEEECT----------------------------TSSEEEEEETTCEEEEE
T ss_pred EEcCCC-ceeE--------EEcCccccceEEEECC----------------------------CCCEEEEEcCCCeEEEE
Confidence 999542 2211 1345678899999999 89999999999999999
Q ss_pred eCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCC
Q 005646 542 NCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCA 621 (686)
Q Consensus 542 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~ 621 (686)
|+...... ...+.. .+....++|+|++. +++.+.+..++
T Consensus 241 d~~~~~~~-------~~~~~~-----------------------------~~~v~~v~~sp~~~-----~la~~~d~~v~ 279 (343)
T 2xzm_R 241 DILNLTYP-------QREFDA-----------------------------GSTINQIAFNPKLQ-----WVAVGTDQGVK 279 (343)
T ss_dssp ESSCCSSC-------SEEEEC-----------------------------SSCEEEEEECSSSC-----EEEEEESSCEE
T ss_pred ECCCCccc-------ceeecC-----------------------------CCcEEEEEECCCCC-----EEEEECCCCEE
Confidence 99543311 111100 11233456777732 23345677888
Q ss_pred CCCCCcCCCcc--ccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 622 TWPEEKLPALS--QLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 622 ~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
+|+..+..... .+...+.......+-....+.++ ..+++|..|++|+.||+||+|..
T Consensus 280 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~sp~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 280 IFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSL-AWNALGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp EEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEE-EECSSSCCEEEEETTSEEEEEEE
T ss_pred EEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEE-EECCCCCeEEEecCCceEEEEEE
Confidence 89865433211 11000000000000001112333 34566999999999999999974
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=311.20 Aligned_cols=281 Identities=20% Similarity=0.340 Sum_probs=221.2
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccC------------ceecccCCceEEEEEeeCCCEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKG------------QEIQAHDGSILTMKFSPDGQYLA 266 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~------------~~l~~H~~~I~~l~fspdg~~La 266 (686)
+|...+ .+|+++++++++|+ ++.++||++....... .+... .....+...|++++|+|+|++||
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA-RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE-EECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE-EecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 344444 56788888998876 7899999986543211 10000 00112334599999999999999
Q ss_pred EEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCC
Q 005646 267 SAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346 (686)
Q Consensus 267 sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (686)
+|+.|++|+|||+.+++ .
T Consensus 140 s~~~d~~i~iwd~~~~~--------------------------------------------------------------~ 157 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRK--------------------------------------------------------------I 157 (393)
T ss_dssp EEETTSCEEEEETTTTE--------------------------------------------------------------E
T ss_pred EEcCCCeEEEEECCCCc--------------------------------------------------------------E
Confidence 99999999999998765 3
Q ss_pred eEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 347 ~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
+..+.+|...|.+++|+|++ +|++++.|++|++||+.++++...+.+...+++++|+|.++++|++|+.||+|++||++
T Consensus 158 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~ 237 (393)
T 1erj_A 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237 (393)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT
T ss_pred EEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 45567899999999999999 99999999999999999999999999999999999999788999999999999999999
Q ss_pred CCcEEEEe--------ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeee----EEeeccccCCCCCeEEEE
Q 005646 426 SCHVVDWV--------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE----ICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 426 ~~~~~~~~--------~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~I~~l~ 493 (686)
++..+... .|...|++++|+|+|++|++|+.||.|++||+.+........ .........|...|.+++
T Consensus 238 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 317 (393)
T 1erj_A 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 317 (393)
T ss_dssp TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEE
T ss_pred CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEE
Confidence 98876443 578899999999999999999999999999997643321100 001112345778899999
Q ss_pred EeCCCCCeEEEEeCCCcEEEEeCCcc---------------eeEc------CCCCEEEEEeCCCcEEEEeCCCC
Q 005646 494 FLPQDSSKVMVSCADSQVRILQGPNV---------------IGKY------KDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iwd~~~~---------------~~~~------~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
|+| ++.+|++++.|+.|++||..+. +++. |++++|+||+.||+|+||++...
T Consensus 318 ~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 318 TTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred ECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999 7889999999999999996532 3444 47899999999999999998653
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=351.86 Aligned_cols=433 Identities=17% Similarity=0.185 Sum_probs=305.5
Q ss_pred cccCccee--eecC--CCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 005646 201 DKQGEGER--VRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (686)
Q Consensus 201 ~~~~~~~~--~s~~--~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~v 276 (686)
.|...+.+ |+++ +..+++|+.|+.|++|++..... ...+.+|.+.|++++|+|++++|++++.||+|++
T Consensus 697 ~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-------~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v 769 (1249)
T 3sfz_A 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-------RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769 (1249)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-------EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-------hheecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence 34445544 4443 34688999999999999876432 3457789999999999999999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe-ccCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF-HGHSG 355 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~ 355 (686)
||+.+++....+...................+..+.+.+++...+... ...+.+|+.... ..+..+ .+|..
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----~~~v~~~d~~~~----~~~~~~~~~~~~ 841 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA----KNKVLLFDIHTS----GLLAEIHTGHHS 841 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE----TTEEEEEETTTC----CEEEEEECSSSS
T ss_pred EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc----CCcEEEEEecCC----CceeEEcCCCCC
Confidence 999999877766544321111111111122333444555544443332 233444443321 223333 48999
Q ss_pred CeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC-------
Q 005646 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS------- 426 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~------- 426 (686)
.|.+++|+|++ ++++++.|++|++||+.++.++..+. |...|++++|+| ++++|++++.||+|++||+.+
T Consensus 842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~ 920 (1249)
T 3sfz_A 842 TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAI 920 (1249)
T ss_dssp CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSS
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeee
Confidence 99999999999 99999999999999999999998887 999999999999 999999999999999998542
Q ss_pred ------------------------------------------------------------------------CcEE-EEe
Q 005646 427 ------------------------------------------------------------------------CHVV-DWV 433 (686)
Q Consensus 427 ------------------------------------------------------------------------~~~~-~~~ 433 (686)
++.+ ...
T Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~ 1000 (1249)
T 3sfz_A 921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000 (1249)
T ss_dssp SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC
T ss_pred cccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc
Confidence 1111 122
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
.|...|++++|+|+|+++++++.||.|++||+.++.... ...|...|.++.|+| + ..+++++.|+.|++
T Consensus 1001 ~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~---------~~~~~~~v~~~~~~~-~-~~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF---------LQAHQETVKDFRLLQ-D-SRLLSWSFDGTVKV 1069 (1249)
T ss_dssp CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC---------CBCCSSCEEEEEECS-S-SEEEEEESSSEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE---------EecCCCcEEEEEEcC-C-CcEEEEECCCcEEE
Confidence 466778999999999999999999999999998876542 345778899999999 3 57889999999999
Q ss_pred EeCC---------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCcccc--ccccccccccC-C-cEEEecCC
Q 005646 514 LQGP---------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQA--KTIRSLERFTT-N-ASIAIPWC 574 (686)
Q Consensus 514 wd~~---------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~--~~~~~~~~~~~-~-~~v~~s~~ 574 (686)
||.. ..++++|++++|++++.||+|++||+.++........ ..+..+ .|.+ . ..+..+.+
T Consensus 1070 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~-~~s~dg~~lat~~~d 1148 (1249)
T 3sfz_A 1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCS-AFSLDGILLATGDDN 1148 (1249)
T ss_dssp EETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEE-EECSSSSEEEEEETT
T ss_pred EECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEE-EECCCCCEEEEEeCC
Confidence 9964 3478899999999999999999999988763322221 112222 2222 1 22233344
Q ss_pred C-CcCCCCCCCCccccc---------CCC--CCcccccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccch
Q 005646 575 G-LKCGNAEKEPQLHVS---------DDD--SPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHK 642 (686)
Q Consensus 575 g-~~~~~~~~g~~l~~~---------~~~--~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~ 642 (686)
| ..+|+..++..+..+ ..| ....++|+||+ ..+++.+ +.+.+|+..+......+... .
T Consensus 1149 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg----~~l~s~~--g~v~vwd~~~g~~~~~~~~~---~- 1218 (1249)
T 3sfz_A 1149 GEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDS----KTLVSAG--GYLKWWNVATGDSSQTFYTN---G- 1218 (1249)
T ss_dssp SCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTS----SCEEEES--SSEEEBCSSSCBCCCCCCCS---S-
T ss_pred CEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCC----CEEEECC--CeEEEEECCCCceeeeeecc---C-
Confidence 4 378999999888765 223 35567899994 4444443 78999997665433222100 0
Q ss_pred hhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 643 SQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
....+. .++++|..|+||+.||.|++|+.
T Consensus 1219 -------~~i~~~-~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1219 -------TNLKKI-HVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp -------CCCCCC-EECSSSCCEEEECTTCCEEEECC
T ss_pred -------CcccEE-EECCCCCEEEEecCCcEEEEEee
Confidence 011222 34556999999999999999974
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=305.95 Aligned_cols=241 Identities=17% Similarity=0.169 Sum_probs=201.7
Q ss_pred cCccee--eecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEee
Q 005646 203 QGEGER--VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (686)
Q Consensus 203 ~~~~~~--~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~ 280 (686)
+..+.+ |+++ +.+++|+.||.|+|||+........ ....+.+|.+.|++++|+|+|++|++|+.|++|+|||+.
T Consensus 82 ~~~v~~~~~s~d-~~l~~~s~dg~v~lWd~~~~~~~~~---~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 82 EAGVADLTWVGE-RGILVASDSGAVELWELDENETLIV---SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp SSCEEEEEEETT-TEEEEEETTSEEEEEEECTTSSCEE---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEEeCC-CeEEEEECCCEEEEEeccCCCceeE---eeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 334444 4444 4788999999999999876533211 113456899999999999999999999999999999998
Q ss_pred cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
+++ ++..+.+|...|.++
T Consensus 158 ~~~--------------------------------------------------------------~~~~~~~h~~~V~~~ 175 (344)
T 4gqb_B 158 QQV--------------------------------------------------------------VLSSYRAHAAQVTCV 175 (344)
T ss_dssp TTE--------------------------------------------------------------EEEEECCCSSCEEEE
T ss_pred CCc--------------------------------------------------------------EEEEEcCcCCceEEE
Confidence 875 355677899999999
Q ss_pred EeeCCC--EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEec
Q 005646 361 SWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVD 434 (686)
Q Consensus 361 ~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~ 434 (686)
+|++++ +|++++.|++|++||+++++++..+. |...+++++|+|.++++|++|+.||+|+|||+++++++ .+..
T Consensus 176 ~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~ 255 (344)
T 4gqb_B 176 AASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV 255 (344)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC
T ss_pred EecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC
Confidence 999987 78999999999999999999888775 66789999999977789999999999999999998876 5667
Q ss_pred cCCcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 435 IRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 435 ~~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
|...|++++|+|+| ++|++|+.||+|+|||+.++++.. ..+|...|++++|+|++..+|++++.|++|++
T Consensus 256 h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~---------~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 256 HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR---------SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE---------ECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE---------EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 89999999999998 579999999999999998876431 34678899999999966677889999999999
Q ss_pred EeCCc
Q 005646 514 LQGPN 518 (686)
Q Consensus 514 wd~~~ 518 (686)
|+..+
T Consensus 327 w~v~~ 331 (344)
T 4gqb_B 327 HVVPT 331 (344)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99865
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-34 Score=295.68 Aligned_cols=266 Identities=23% Similarity=0.358 Sum_probs=224.1
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+ .+|+++++++++++.|+.|+||+...... ...+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-------EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc-------chhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 455555 45667788999999999999998765432 245778999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+++ .+..+.+|...|.
T Consensus 94 ~~~~~--------------------------------------------------------------~~~~~~~~~~~v~ 111 (312)
T 4ery_A 94 VSSGK--------------------------------------------------------------CLKTLKGHSNYVF 111 (312)
T ss_dssp TTTCC--------------------------------------------------------------EEEEEECCSSCEE
T ss_pred CCCCc--------------------------------------------------------------EEEEEcCCCCCEE
Confidence 97764 3455678999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe--c
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV--D 434 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~ 434 (686)
+++|+|++ +|++++.|++|++||+.+++++..+. |...|.+++|+| ++++|++|+.||.|++||+++++.+... .
T Consensus 112 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 190 (312)
T 4ery_A 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 190 (312)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEecc
Confidence 99999999 99999999999999999999998887 899999999999 9999999999999999999998877543 4
Q ss_pred cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCC--eEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR--ITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
+...+..++|+|++++|++++.||.|++||+.+++..... ..|... .....+++.++.+|++++.|+.|+
T Consensus 191 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~ 262 (312)
T 4ery_A 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--------TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262 (312)
T ss_dssp SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE--------CSSCCSSSCCCEEEECSSSCEEEECCTTSCEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--------EecCCceEEEEEEEEeCCCcEEEEECCCCEEE
Confidence 5567999999999999999999999999999988754321 112222 223456655788999999999999
Q ss_pred EEeCCc---------------ceeEcCCCCEEEEEe--CCCcEEEEeCC
Q 005646 513 ILQGPN---------------VIGKYKDGKHIVSAG--EDSNVYMWNCI 544 (686)
Q Consensus 513 iwd~~~---------------~~~~~~dg~~l~sgs--~Dg~V~iWd~~ 544 (686)
+||..+ .++++|++++|++++ .|++|++|+.+
T Consensus 263 vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 263 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999653 367889999999997 69999999975
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=325.61 Aligned_cols=271 Identities=20% Similarity=0.379 Sum_probs=222.5
Q ss_pred eeecccCcceeeecC---CCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcE
Q 005646 198 CVVDKQGEGERVRLN---EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVV 274 (686)
Q Consensus 198 ~~~~~~~~~~~~s~~---~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I 274 (686)
....|...+.++... ++.+++|+.|+.|+||++........ .....+.+|...|++++|+|+|++|+||+.||+|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--VAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--cccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 344677777776643 35789999999999999876433211 1234688999999999999999999999999999
Q ss_pred EEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC
Q 005646 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (686)
Q Consensus 275 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 354 (686)
+|||+.++. .+..+.+|.
T Consensus 455 ~vwd~~~~~--------------------------------------------------------------~~~~~~~h~ 472 (694)
T 3dm0_A 455 RLWDLAAGV--------------------------------------------------------------STRRFVGHT 472 (694)
T ss_dssp EEEETTTTE--------------------------------------------------------------EEEEEECCS
T ss_pred EEEECCCCc--------------------------------------------------------------ceeEEeCCC
Confidence 999998765 234567899
Q ss_pred CCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEe----eCCCCeEEEEEeecCC--CEEEEEEcCCcEEEEecCCC
Q 005646 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF----PHSNYVTCVHFNPVDD--NYFISGSIDGKVRIWAVLSC 427 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~----~h~~~V~~v~fsp~~~--~~l~sgs~Dg~V~iwd~~~~ 427 (686)
..|.+++|+|++ +|++++.|++|++||+......... .|...|++++|+| ++ .+|++|+.|++|++||++++
T Consensus 473 ~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~ 551 (694)
T 3dm0_A 473 KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSNC 551 (694)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTTC
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCCC
Confidence 999999999999 9999999999999998765444332 2888999999999 54 68999999999999999998
Q ss_pred cEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 428 HVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 428 ~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
++. .+..|...|++++|+|+|++|++|+.||.|++||+.+++..... .+...|.+++|+| ++.++++ +
T Consensus 552 ~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~---------~~~~~v~~~~~sp-~~~~l~~-~ 620 (694)
T 3dm0_A 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL---------EANSVIHALCFSP-NRYWLCA-A 620 (694)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC---------BCSSCEEEEEECS-SSSEEEE-E
T ss_pred cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe---------cCCCcEEEEEEcC-CCcEEEE-E
Confidence 877 45578899999999999999999999999999999988754321 1335699999999 5555554 5
Q ss_pred CCCcEEEEeCCc----------------------------------ceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 507 ADSQVRILQGPN----------------------------------VIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 507 ~D~~I~iwd~~~----------------------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
.++.|++||..+ .++|+|+|++|++|+.||.|+||++.
T Consensus 621 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 621 TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 567799999642 35689999999999999999999985
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=309.93 Aligned_cols=264 Identities=14% Similarity=0.134 Sum_probs=219.2
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
..+|+++++++++++.++.|++|+...... ...+..| ..+....|+|++++||+|+.||.|++||+.+++
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-- 130 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDG-------SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-- 130 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEET-------TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE--
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccce-------eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc--
Confidence 467899999999999999999999865432 2334445 445555789999999999999999999987654
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
....+.+|...|.+++|+|+
T Consensus 131 ------------------------------------------------------------~~~~~~~h~~~v~~~~~~~~ 150 (420)
T 3vl1_A 131 ------------------------------------------------------------QREIDQAHVSEITKLKFFPS 150 (420)
T ss_dssp ------------------------------------------------------------EEEETTSSSSCEEEEEECTT
T ss_pred ------------------------------------------------------------eeeecccccCccEEEEECCC
Confidence 23444679999999999999
Q ss_pred C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec----cCCcE
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD----IRQIV 439 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~----~~~~V 439 (686)
+ +|++++.|++|++||+.+++++..+. |...|++++|+| ++++|++++.||+|++||+++++.+.... +...+
T Consensus 151 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV 229 (420)
T ss_dssp SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence 9 99999999999999999999998887 999999999999 99999999999999999999998775553 33344
Q ss_pred EE---------------------EEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC
Q 005646 440 TA---------------------VCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (686)
Q Consensus 440 ~~---------------------v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~ 498 (686)
.+ ++|+|+|++|++|+.||.|++||+.+++.... ....|...|++++|+|++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~~~v~~~~~~~~~ 302 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ-------LPSKFTCSCNSLTVDGNN 302 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE-------ECCTTSSCEEEEEECSSC
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE-------cccccCCCceeEEEeCCC
Confidence 44 45578999999999999999999988764332 133567889999999944
Q ss_pred CCeEEEEeCCCcEEEEeCCcc----------------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 499 SSKVMVSCADSQVRILQGPNV----------------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 499 ~~~l~~~s~D~~I~iwd~~~~----------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..+|++++.|+.|++||..+. ..+++++++|++++.|+.|++|++..+.
T Consensus 303 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 303 ANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp TTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTT
T ss_pred CCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCC
Confidence 449999999999999997642 1245589999999999999999998854
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-34 Score=306.15 Aligned_cols=344 Identities=13% Similarity=0.116 Sum_probs=249.6
Q ss_pred cceeeecCCC-cccee----------eccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCc
Q 005646 205 EGERVRLNEE-DAMFC----------SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGV 273 (686)
Q Consensus 205 ~~~~~s~~~~-~l~~g----------~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 273 (686)
...+|++++. .++++ +.|+.|+||++...... .... ...|...|++++|+|++++|++|+.||.
T Consensus 16 ~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~----~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 16 ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE----KPIA-SLQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC----SCSC-CCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC----cEEE-EEecCCceEEEEECCCCCeEEEEccCCe
Confidence 3456777776 77888 88999999998765421 0111 2358999999999999999999999999
Q ss_pred EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccC
Q 005646 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (686)
Q Consensus 274 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 353 (686)
|++||+.+.... .+.+..+.+|
T Consensus 91 v~vw~~~~~~~~----------------------------------------------------------~~~~~~~~~h 112 (416)
T 2pm9_A 91 LELYSTNEANNA----------------------------------------------------------INSMARFSNH 112 (416)
T ss_dssp EEEECCSSTTSC----------------------------------------------------------CCEEEECCCS
T ss_pred EEEeeccccccc----------------------------------------------------------ccchhhccCC
Confidence 999999762100 0245666789
Q ss_pred CCCeeEEEeeCC-C-EEEEEECCCcEEEEECCCCe------eeeEe----eCCCCeEEEEEeecCCCEEEEEEcCCcEEE
Q 005646 354 SGEILDLSWSKN-N-YLLSASIDKTVRLWRVGNDH------CLRVF----PHSNYVTCVHFNPVDDNYFISGSIDGKVRI 421 (686)
Q Consensus 354 ~~~V~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~~------~~~~~----~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~i 421 (686)
...|.+++|+|+ + +|++++.|++|++||+.+++ ....+ .|...|++++|+|..+.+|++++.||.|++
T Consensus 113 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 192 (416)
T 2pm9_A 113 SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASI 192 (416)
T ss_dssp SSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEE
T ss_pred ccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEE
Confidence 999999999998 5 99999999999999999886 33333 389999999999933899999999999999
Q ss_pred EecCCCcEEEEecc-------CCcEEEEEEccCC-CEEEEEecCC---cEEEEeCCCCeeeeeeeEEeecccc-CCCCCe
Q 005646 422 WAVLSCHVVDWVDI-------RQIVTAVCYRPDG-QGGIVGSMMG---DCRFYNVSDNHLELDAEICVHSKKK-APCKRI 489 (686)
Q Consensus 422 wd~~~~~~~~~~~~-------~~~V~~v~~spdg-~~l~~gs~dg---~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~I 489 (686)
||+++++.+..... ...|++++|+|++ .++++++.|+ .|++||+.+..... .... .|...|
T Consensus 193 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~-------~~~~~~~~~~v 265 (416)
T 2pm9_A 193 WDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL-------QTLNQGHQKGI 265 (416)
T ss_dssp EETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS-------BCCCSCCSSCE
T ss_pred EECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc-------EEeecCccCce
Confidence 99999988755543 6789999999997 6899999998 99999998753211 1123 577889
Q ss_pred EEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCC-CEEEEEeCCCcEEEEeCCCCCCCCccc
Q 005646 490 TGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDG-KHIVSAGEDSNVYMWNCIGHEEPAHDQ 553 (686)
Q Consensus 490 ~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg-~~l~sgs~Dg~V~iWd~~~~~~~~~~~ 553 (686)
++++|+|.++.+|++++.|+.|++||..+ .++|+|++ ++|++++.||.|+||++.+........
T Consensus 266 ~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~ 345 (416)
T 2pm9_A 266 LSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQ 345 (416)
T ss_dssp EEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-
T ss_pred eEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccc
Confidence 99999997889999999999999999642 47788998 899999999999999999876332211
Q ss_pred c---ccccccccccC-CcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCc
Q 005646 554 A---KTIRSLERFTT-NASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEK 627 (686)
Q Consensus 554 ~---~~~~~~~~~~~-~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~ 627 (686)
. ........+.. ...++ .+.......- ............++|+|| +..+.+++.|+.+++|+.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~s~d----g~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 346 ETETKQQESETDFWNNVSREE---SKEKPSVFHL--QAPTWYGEPSPAAHWAFG----GKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp ------------------------CCSCCCSSCC--CCCSTTCCCSCCCEEETT----TEEECBCTTSSCBCCBCCCC
T ss_pred cccccccCCcccccccccccc---cccccccccc--cCCccccCCccceEEeeC----CeEEEEeCCCCeEEEEEecc
Confidence 1 00000001100 00000 0000000000 000011223346789999 55566788999999999654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-34 Score=297.40 Aligned_cols=303 Identities=18% Similarity=0.193 Sum_probs=209.2
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+.+.+|.++|++++|+|+ +||||+.|++|+|||+.++..
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-------------------------------------- 46 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-------------------------------------- 46 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--------------------------------------
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--------------------------------------
Confidence 3568899999999999987 999999999999999976421
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEe-c-cCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCC-------CeeeeEee
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEF-H-GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN-------DHCLRVFP 392 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~-~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~-------~~~~~~~~ 392 (686)
+.+..+ . +|...|.+++|+|++ +|++++.|++|+|||+.. .+++..+.
T Consensus 47 ----------------------~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 104 (330)
T 2hes_X 47 ----------------------TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE 104 (330)
T ss_dssp ----------------------EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC
T ss_pred ----------------------EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc
Confidence 012223 2 399999999999999 999999999999999853 34566666
Q ss_pred -CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC----cEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCC
Q 005646 393 -HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC----HVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 393 -h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~----~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~ 466 (686)
|...|++++|+| ++++|++|+.|++|++||++.. +++ .+..|...|++++|+|++++|++|+.|++|++||+.
T Consensus 105 ~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~ 183 (330)
T 2hes_X 105 GHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183 (330)
T ss_dssp ----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEE
T ss_pred CCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 999999999999 9999999999999999999532 333 456788999999999999999999999999999987
Q ss_pred CCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 467 DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
++.... ......|...|.+++|+|+. ++.+|++|+.|++|+||++..+
T Consensus 184 ~~~~~~------~~~~~~h~~~v~~~~~~~~~--------------------------~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 184 DDDWEC------VAVLNGHEGTVWSSDFDKTE--------------------------GVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp TTEEEE------EEEECCCSSCEEEEEECCSS--------------------------SSCEEEEEETTSCEEEEEEEEE
T ss_pred CCCeeE------EEEccCCCCcEEEEEecCCC--------------------------CeeEEEEEeCCCeEEEEEecCC
Confidence 653221 11234677899999999921 2678999999999999998764
Q ss_pred CCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCC
Q 005646 547 EEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEE 626 (686)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~ 626 (686)
.............+.. ........++|+|+ ..+++++.|+.+++|+..
T Consensus 232 ~~~~~~~~~~~~~~~~---------------------------~h~~~v~~v~~s~~-----~~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 232 DEDDQQEWVCEAILPD---------------------------VHKRQVYNVAWGFN-----GLIASVGADGVLAVYEEV 279 (330)
T ss_dssp CTTSCEEEEEEEECCS---------------------------CCSSCEEEEEECTT-----SCEEEEETTSCEEEEEEE
T ss_pred CccccceeEEeeeccc---------------------------ccccceEEEEEcCC-----CEEEEEeCCCEEEEEEcC
Confidence 3111000011111100 01112334556654 256678899999999955
Q ss_pred cCCCccccccccccchhhHHhhhcccccCccCCC-CceEEEEecCCCeEeEEee
Q 005646 627 KLPALSQLSSASALHKSQYKFLKSSCLCTTSSHA-WGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ivT~~~DG~Ir~w~~ 679 (686)
.... ... . .....+.. ....++++.+. ++.+|||||.||+||+|+.
T Consensus 280 ~~~~-~~~--~-~~~~~h~~---~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 280 DGEW-KVF--A-KRALCHGV---YEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp TTEE-EEE--E-EESCTTTT---SCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred CCce-EEE--e-cccccccc---ceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 3310 000 0 00001100 00112223332 5889999999999999975
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=289.50 Aligned_cols=236 Identities=19% Similarity=0.285 Sum_probs=198.5
Q ss_pred eecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEe
Q 005646 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (686)
.+.+|.+.|++++|+|+|++||||+.|++|+|||+....
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~----------------------------------------- 42 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET----------------------------------------- 42 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-----------------------------------------
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-----------------------------------------
Confidence 467899999999999999999999999999999986432
Q ss_pred eccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC--C-EEEEEECCCcEEEEECCCCe--eeeEee-CCCCeE
Q 005646 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYVT 398 (686)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~--~~~~~~-h~~~V~ 398 (686)
.+++..+.+|.+.|.+++|+++ + +|++++.|++|+|||+.+++ ++..+. |...|+
T Consensus 43 -------------------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~ 103 (297)
T 2pm7_B 43 -------------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVN 103 (297)
T ss_dssp -------------------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEE
T ss_pred -------------------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCcee
Confidence 0245678899999999999863 5 99999999999999999874 445555 999999
Q ss_pred EEEEeecC--CCEEEEEEcCCcEEEEecCCCc---EEEEeccCCcEEEEEEccC-------------CCEEEEEecCCcE
Q 005646 399 CVHFNPVD--DNYFISGSIDGKVRIWAVLSCH---VVDWVDIRQIVTAVCYRPD-------------GQGGIVGSMMGDC 460 (686)
Q Consensus 399 ~v~fsp~~--~~~l~sgs~Dg~V~iwd~~~~~---~~~~~~~~~~V~~v~~spd-------------g~~l~~gs~dg~i 460 (686)
+++|+| + +.+|++|+.|++|++||+++.. ......|...|++++|+|+ +++|++|+.|++|
T Consensus 104 ~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v 182 (297)
T 2pm7_B 104 SVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182 (297)
T ss_dssp EEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCE
T ss_pred EEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcE
Confidence 999999 5 7899999999999999998763 3456678899999999997 5799999999999
Q ss_pred EEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC--CCeEEEEeCCCcEEEEeCCc--------------------
Q 005646 461 RFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD--SSKVMVSCADSQVRILQGPN-------------------- 518 (686)
Q Consensus 461 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~--~~~l~~~s~D~~I~iwd~~~-------------------- 518 (686)
++||+.++..... .......|...|.+++|+|+. +.+|++++.|++|++||..+
T Consensus 183 ~lwd~~~~~~~~~----~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~ 258 (297)
T 2pm7_B 183 KIWKYNSDAQTYV----LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLW 258 (297)
T ss_dssp EEEEEETTTTEEE----EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEE
T ss_pred EEEEEcCCCceEE----EEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEE
Confidence 9999976542211 111234678899999999953 57999999999999998532
Q ss_pred ceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 519 VIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 519 ~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
.++|+|+|++|++++.|+.|+||+...
T Consensus 259 ~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 259 RASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 256889999999999999999999864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=287.38 Aligned_cols=269 Identities=16% Similarity=0.249 Sum_probs=229.1
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+ .++++++..+++++ ++.|++|++....... ........+|...|++++|+|++++|++++.|+.|++||
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS--PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS--CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee--eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 344444 45667788888888 9999999987643211 111111237999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+++. .....+.+|...|.
T Consensus 126 ~~~~~~------------------------------------------------------------~~~~~~~~~~~~i~ 145 (337)
T 1gxr_A 126 LAAPTP------------------------------------------------------------RIKAELTSSAPACY 145 (337)
T ss_dssp CCCC--------------------------------------------------------------EEEEEEECSSSCEE
T ss_pred CCCCCc------------------------------------------------------------ceeeecccCCCceE
Confidence 977541 12345567899999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccC
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR 436 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~ 436 (686)
+++|+|++ +|++++.|+.|++||+.+++.+..+. |...|++++|+| ++++|++++.||.|++||+++++.+....+.
T Consensus 146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 224 (337)
T 1gxr_A 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFT 224 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeecCC
Confidence 99999999 99999999999999999999998887 999999999999 9999999999999999999999998888899
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
..+.+++|+|+++++++++.+|.|++||+.+.+... ...|...|++++|+| ++.+|++++.|+.|++|+.
T Consensus 225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~---------~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ---------LHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE---------ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE---------EcCCccceeEEEECC-CCCEEEEecCCCcEEEEEC
Confidence 999999999999999999999999999998875421 234668899999999 8899999999999999996
Q ss_pred Cc--------------ceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 517 PN--------------VIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 517 ~~--------------~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
.+ .++++|++++|++++.||.|++|++
T Consensus 295 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 295 PYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 53 3678899999999999999999996
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=301.98 Aligned_cols=267 Identities=15% Similarity=0.234 Sum_probs=215.5
Q ss_pred ceeeecCCC-ccceeeccceEEEEEc----CCccc-----ccccccc----CceecccCCceEEEEEeeCCCEEEEEeCC
Q 005646 206 GERVRLNEE-DAMFCSKVQRVKVYHC----KKRSK-----ELSALYK----GQEIQAHDGSILTMKFSPDGQYLASAGDD 271 (686)
Q Consensus 206 ~~~~s~~~~-~l~~g~~d~~v~vw~~----~~~~~-----~~~~~~~----~~~l~~H~~~I~~l~fspdg~~Lasgs~D 271 (686)
..+|++++. ++++++.|+.|+||++ ..... ....+.. .....+|.+.|++++|+|++++|++|+.|
T Consensus 50 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 129 (425)
T 1r5m_A 50 SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVEN 129 (425)
T ss_dssp EEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCC
Confidence 356677788 9999999999999998 54431 1111100 01122378899999999999999999999
Q ss_pred CcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEec
Q 005646 272 GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351 (686)
Q Consensus 272 g~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 351 (686)
|.|++|| .+++ .+..+.
T Consensus 130 g~i~i~~-~~~~--------------------------------------------------------------~~~~~~ 146 (425)
T 1r5m_A 130 GELRLWN-KTGA--------------------------------------------------------------LLNVLN 146 (425)
T ss_dssp SCEEEEE-TTSC--------------------------------------------------------------EEEEEC
T ss_pred CeEEEEe-CCCC--------------------------------------------------------------eeeecc
Confidence 9999999 3332 345567
Q ss_pred cCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCC---------------eEEEEEeecCCCEEEEEE
Q 005646 352 GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNY---------------VTCVHFNPVDDNYFISGS 414 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~---------------V~~v~fsp~~~~~l~sgs 414 (686)
+|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+. +... +.+++|+| + ..+++++
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ 224 (425)
T 1r5m_A 147 FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPG 224 (425)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE-T-TEEEEEC
T ss_pred CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEc
Confidence 799999999999999 99999999999999999999998887 5555 99999998 5 6799999
Q ss_pred cCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 415 IDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 415 ~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
.||.|++||+.+++.+ .+..|...|++++|+|++++|++++.||.|++||+.+++.... ...|...|.+++
T Consensus 225 ~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--------~~~~~~~i~~~~ 296 (425)
T 1r5m_A 225 PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC--------FYGHSQSIVSAS 296 (425)
T ss_dssp GGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEE--------ECCCSSCEEEEE
T ss_pred CCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceE--------ecCCCccEEEEE
Confidence 9999999999998766 4457889999999999999999999999999999987654321 234667899999
Q ss_pred EeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 494 FLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
|+| ++ .+++++.|+.|++||..+ .++++|++++|++++.||.|+||++.++.
T Consensus 297 ~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 297 WVG-DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EET-TT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred ECC-CC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 999 55 999999999999999643 36788999999999999999999997654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-33 Score=288.51 Aligned_cols=265 Identities=14% Similarity=0.207 Sum_probs=218.3
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
...++++++..++++..++.+.+|....... .....+|...|++++|+|++++|++++ ||.|++||+.+++.
T Consensus 13 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 13 YSFHVTADGQMQPVPFPPDALIGPGIPRHAR-------QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp CEEEECSSSCEEECCCCTTSSSSTTCCSEEE-------EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred eEEEECCCCCEEEeecCCCcEeccccCCccc-------cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence 3467888999998888777666653322211 122347999999999999999999999 99999999977542
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe--ccCCCCeeEEEe
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF--HGHSGEILDLSW 362 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~l~~ 362 (686)
.. .+..+ .+|...|.+++|
T Consensus 85 ~~-----------------------------------------------------------~~~~~~~~~~~~~v~~~~~ 105 (337)
T 1gxr_A 85 KS-----------------------------------------------------------PVSQLDCLNRDNYIRSCKL 105 (337)
T ss_dssp CS-----------------------------------------------------------CSEEEECSCTTSBEEEEEE
T ss_pred ee-----------------------------------------------------------eeecccccCCCCcEEEEEE
Confidence 11 12222 368999999999
Q ss_pred eCCC-EEEEEECCCcEEEEECCCCe--eeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-EeccCC
Q 005646 363 SKNN-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQ 437 (686)
Q Consensus 363 s~~~-~L~s~s~Dg~V~iWd~~~~~--~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~ 437 (686)
+|++ +|++++.|+.|++||+.+++ ....+. |...|++++|+| ++++|++++.||.|++||+++++.+. +..|..
T Consensus 106 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~ 184 (337)
T 1gxr_A 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 184 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred cCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccC
Confidence 9999 99999999999999999887 444454 889999999999 99999999999999999999988774 445788
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
.|++++|+|++++|++++.||.|++||+.+++..... .+...+.+++|+| ++..+++++.|+.|++||..
T Consensus 185 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---------~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 185 GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH---------DFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---------ECSSCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred ceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee---------cCCCceEEEEECC-CCCEEEEEcCCCcEEEEECC
Confidence 9999999999999999999999999999988754321 2446799999999 78899999999999999965
Q ss_pred c--------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 518 N--------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 518 ~--------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+ .++++|++++|++++.||.|++|++.+++
T Consensus 255 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 255 KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp SSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 3 36788899999999999999999988754
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=287.54 Aligned_cols=297 Identities=17% Similarity=0.276 Sum_probs=224.8
Q ss_pred ecccCcceeeec--C-CCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 005646 200 VDKQGEGERVRL--N-EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (686)
Q Consensus 200 ~~~~~~~~~~s~--~-~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~v 276 (686)
..|...+.++++ + ++++++|+.|++|+||++...... .....+.+++|...|++++|+|+|++|++|+.|+.|++
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~--~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~ 112 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN--YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC--SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc--cceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence 457777766554 4 467999999999999998765332 22234568899999999999999999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
|+.....................+.... ...+ ..+.+..+.+|+.... ......+.+|...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~l~---s~s~d~~~~~~d~~~~---~~~~~~~~~~~~~ 173 (340)
T 4aow_A 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDN-------------RQIV---SGSRDKTIKLWNTLGV---CKYTVQDESHSEW 173 (340)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTS-------------SCEE---EEETTSCEEEECTTSC---EEEEECSSSCSSC
T ss_pred EeecccceeeeecCCCCceeEEEEeecC-------------ccce---eecCCCeEEEEEeCCC---ceEEEEeccccCc
Confidence 9998887766665544433333222211 1111 1122333334433211 1223445689999
Q ss_pred eeEEEeeCCC---EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE
Q 005646 357 ILDLSWSKNN---YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 357 V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~ 432 (686)
|..++|++++ ++++++.|++|++||+.+++++..+. |...|++++|+| ++++|++|+.||+|++||+++.+.+..
T Consensus 174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYT 252 (340)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred ccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeee
Confidence 9999999875 78899999999999999999998887 999999999999 999999999999999999999999988
Q ss_pred eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE-eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC-VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
..+...|.+++|+|++.+ ++++.|+.|++||+.+.......... .......|...|++++|+|
T Consensus 253 ~~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--------------- 316 (340)
T 4aow_A 253 LDGGDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA--------------- 316 (340)
T ss_dssp EECSSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT---------------
T ss_pred ecCCceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC---------------
Confidence 888899999999998865 45667999999999887654432211 1122346778899999999
Q ss_pred EEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 512 RILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 512 ~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
||++|++|+.||.|+|||+.+|.
T Consensus 317 -------------dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 317 -------------DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -------------TSSEEEEEETTSCEEEEEEEC--
T ss_pred -------------CCCEEEEEeCCCEEEEEeCCCcC
Confidence 89999999999999999998874
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=313.33 Aligned_cols=244 Identities=12% Similarity=0.085 Sum_probs=184.1
Q ss_pred cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC------CCEEEEEeCCCcEEEEEeecCee
Q 005646 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD------GQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 211 ~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
+++..+++++.|++|+||++....... .....+.+|.+.|++++|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~---~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~ 247 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHC---VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNAT 247 (524)
T ss_dssp -----------CEEEEEEEEETTTCCE---EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSS
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCc---eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcc
Confidence 445567888999999999986543211 112346678899999999996 57999999999999999976542
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
..... + ....+...+.+|...|.+++|++
T Consensus 248 ~~~~~----------~-----------------------------------------~~~~p~~~l~~h~~~v~sv~~s~ 276 (524)
T 2j04_B 248 DVHVF----------K-----------------------------------------MCEKPSLTLSLADSLITTFDFLS 276 (524)
T ss_dssp SSSEE----------E-----------------------------------------CCCSCSEEECCTTTCEEEEEESS
T ss_pred ccccc----------e-----------------------------------------eecCceEEEEcCCCCEEEEEecC
Confidence 10000 0 00135567889999999999998
Q ss_pred CCEEEEEECCCcEEEEECCCCe-eeeEee-CCCCeEEE--EEeecCC-CEEEEEEcCCcEEEEecCCCcEE-EEeccC--
Q 005646 365 NNYLLSASIDKTVRLWRVGNDH-CLRVFP-HSNYVTCV--HFNPVDD-NYFISGSIDGKVRIWAVLSCHVV-DWVDIR-- 436 (686)
Q Consensus 365 ~~~L~s~s~Dg~V~iWd~~~~~-~~~~~~-h~~~V~~v--~fsp~~~-~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~-- 436 (686)
++.|++|+.||+|++||++++. +...+. |...|++| +|+| ++ .+|+||+.|++|+|||+++++.. .+..|.
T Consensus 277 ~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~ 355 (524)
T 2j04_B 277 PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG 355 (524)
T ss_dssp SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence 7899999999999999999764 444455 99999999 4666 76 89999999999999999987654 233343
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
..|.+++|+|+++.+++++.|++|++||++++.+... ...|...|++++|+|
T Consensus 356 ~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~--------l~gH~~~V~sva~Sp-------------------- 407 (524)
T 2j04_B 356 SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP--------LVSRETTITAIGVSR-------------------- 407 (524)
T ss_dssp CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE--------EEECSSCEEEEECCS--------------------
T ss_pred CcccceEeCCCcCeEEEeCCCCcEEEEECccccccee--------eecCCCceEEEEeCC--------------------
Confidence 2478999999999999999999999999988664321 224678899999999
Q ss_pred CcceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 517 PNVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 517 ~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+|++|++|+.||+|+|||+..
T Consensus 408 --------~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 408 --------LHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp --------SCCBCEEEETTTEEECCBSCS
T ss_pred --------CCCeEEEEECCCEEEEEechH
Confidence 899999999999999999865
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=315.31 Aligned_cols=417 Identities=13% Similarity=0.147 Sum_probs=300.0
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+ .+|++++.++++++.+|.|+||++..... .+.+.+|.++|++++|+|++++|++|+.||.|+|||
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-------VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-------EEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 344444 56778888999999999999999865432 356778999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+++.+..+..+...+.++.|.++. ...+ ..+.+..+.+|+.... ......+.+|...|.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~-------------~~l~---~~~~dg~i~vw~~~~~---~~~~~~~~~~~~~v~ 144 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK-------------PYVL---SGSDDLTVKLWNWENN---WALEQTFEGHEHFVM 144 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS-------------SEEE---EEETTSEEEEEEGGGT---SEEEEEEECCSSCEE
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCC-------------CEEE---EEcCCCEEEEEECCCC---ceEEEEEcCCCCcEE
Confidence 99999888887666655555554433 2221 1222334444443211 134567889999999
Q ss_pred EEEeeC-CC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeec-CCCEEEEEEcCCcEEEEecCCCcEEE-E
Q 005646 359 DLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVVD-W 432 (686)
Q Consensus 359 ~l~~s~-~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~-~~~~l~sgs~Dg~V~iwd~~~~~~~~-~ 432 (686)
+++|+| ++ .|++++.|++|++||+.++.....+. +...|++++|+|. ++.+|++|+.||.|++||+.+++.+. +
T Consensus 145 ~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 224 (814)
T 3mkq_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (814)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 999999 66 99999999999999999888777766 5589999999983 67899999999999999999988774 4
Q ss_pred eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
..|...|++++|+|+|+++++++.||.|++||+.+++.... ...+...+.+++|+|++...+++++.++.+.
T Consensus 225 ~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 296 (814)
T 3mkq_A 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT--------LNVGLERSWCIATHPTGRKNYIASGFDNGFT 296 (814)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEE--------ECCSSSSEEEEEECTTCGGGEEEEEETTEEE
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE--------eecCCCcEEEEEEccCCCceEEEEEeCCCEE
Confidence 55888999999999999999999999999999988765432 2335578999999995555556666677777
Q ss_pred EEeCC----------------------------------------------------------cceeEcCCCCEEEEEeC
Q 005646 513 ILQGP----------------------------------------------------------NVIGKYKDGKHIVSAGE 534 (686)
Q Consensus 513 iwd~~----------------------------------------------------------~~~~~~~dg~~l~sgs~ 534 (686)
+|+.. ..++++|+|++|++++
T Consensus 297 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~- 375 (814)
T 3mkq_A 297 VLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG- 375 (814)
T ss_dssp EEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-
T ss_pred EEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-
Confidence 77631 2467888999999998
Q ss_pred CCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcc---cccCCC--CCcccccCCCccccCc
Q 005646 535 DSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQL---HVSDDD--SPENLAFAPARFSLGQ 609 (686)
Q Consensus 535 Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l---~~~~~~--~~~~~~~spd~~~~~~ 609 (686)
|+.+++|++...... .......++++++|...........+ ..+.++ ....+.|+||+.. +.
T Consensus 376 ~~~~~i~~~~~~~~~------------~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~~~v~~~~~s~dg~~-~~ 442 (814)
T 3mkq_A 376 DGEYVIYTALAWRNK------------AFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDRLF-SG 442 (814)
T ss_dssp TTEEEEEETTTTEEE------------EEEECSEEEECTTSSCEEEECTTCCEEEEETTEECTTCCCCCSSCCCEEE-CS
T ss_pred CCEEEEEECcccccc------------CCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCccceEEcCCcCcccee-cc
Confidence 899999997643210 01113345555554421111111111 122333 3355678999532 24
Q ss_pred cccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccCccCCCCceEEEEe------cCCCeEeEEeec
Q 005646 610 EYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTA------GWDGRIRSFLNY 680 (686)
Q Consensus 610 ~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~------~~DG~Ir~w~~~ 680 (686)
.+++.+.++.+.+|+.++......+... +..+ ..+++|..|+++ +.|+.+.+|.|.
T Consensus 443 ~l~~~~~d~~v~~~d~~~~~~~~~~~~~--------------~~~v-~~s~dg~~la~~~~~~~~~~~~~~~~~~~~ 504 (814)
T 3mkq_A 443 ALLGVKSDGFVYFFDWDNGTLVRRIDVN--------------AKDV-IWSDNGELVMIVNTNSNGDEASGYTLLFNK 504 (814)
T ss_dssp SSEEEEETTEEEEECTTTCCEEEEESSC--------------EEEE-EECTTSSEEEEEECCCSSCSCSEEEEEECH
T ss_pred eEEEEecCCEEEEEECCcCcEEEEEecC--------------CCEE-EEcCCCCEEEEEEcCcccCCceEEEEEech
Confidence 5666778999999997665432222101 1112 345569999999 888888888764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=288.26 Aligned_cols=211 Identities=23% Similarity=0.401 Sum_probs=176.8
Q ss_pred CceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 243 GQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
..+|+||.+.|++|+|+|+ +++|||||.|++|+|||+.+.+...
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~----------------------------------- 75 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY----------------------------------- 75 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS-----------------------------------
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc-----------------------------------
Confidence 3578999999999999997 6899999999999999997654211
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEE
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTC 399 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~ 399 (686)
..+...+.+|...|.+++|+|++ +|++++.|+.|++|+........... +...+..
T Consensus 76 ----------------------~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~ 133 (340)
T 4aow_A 76 ----------------------GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS 133 (340)
T ss_dssp ----------------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred ----------------------ceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeE
Confidence 02456778999999999999999 99999999999999999998887777 7888999
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCcEEE--EeccCCcEEEEEEccCC--CEEEEEecCCcEEEEeCCCCeeeeeee
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD--WVDIRQIVTAVCYRPDG--QGGIVGSMMGDCRFYNVSDNHLELDAE 475 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg--~~l~~gs~dg~i~iwd~~~~~~~~~~~ 475 (686)
+.++| ++++|++|+.|+.+++||+....... ...|...+..++|++++ .++++++.|+.|++||+.++++...
T Consensus 134 ~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~-- 210 (340)
T 4aow_A 134 VAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN-- 210 (340)
T ss_dssp EEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE--
T ss_pred EEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE--
Confidence 99999 89999999999999999998766543 34678889999999865 5688999999999999998875432
Q ss_pred EEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 476 ~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
...|...|++++|+| ++++|++|+.||.|+|||+.+.+
T Consensus 211 ------~~~h~~~v~~~~~s~----------------------------~~~~l~s~s~Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 211 ------HIGHTGYLNTVTVSP----------------------------DGSLCASGGKDGQAMLWDLNEGK 248 (340)
T ss_dssp ------ECCCSSCEEEEEECT----------------------------TSSEEEEEETTCEEEEEETTTTE
T ss_pred ------ecCCCCcEEEEEECC----------------------------CCCEEEEEeCCCeEEEEEeccCc
Confidence 345778899999999 67777777777777777776543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=330.28 Aligned_cols=437 Identities=13% Similarity=0.090 Sum_probs=272.5
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
..|++ ++++++++.|+.|+||++..... ...+. |.+.|++++|+|++++|++|+.||+|++||+.+++..
T Consensus 64 l~fsp-g~~L~S~s~D~~v~lWd~~~~~~-------~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~- 133 (902)
T 2oaj_A 64 MRFVK-GIYLVVINAKDTVYVLSLYSQKV-------LTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS- 133 (902)
T ss_dssp EEEET-TTEEEEEETTCEEEEEETTTCSE-------EEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-
T ss_pred EEEcC-CCEEEEEECcCeEEEEECCCCcE-------EEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-
Confidence 45566 66799999999999999876432 12333 6789999999999999999999999999999887753
Q ss_pred eeccCCCCCcce-EEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc-------------
Q 005646 287 EVDIPEIDPSCI-YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG------------- 352 (686)
Q Consensus 287 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------- 352 (686)
.+..+.. ... .....+...+..+.+.+.....+.. ...+..+ +|+.+.. +++..+.+
T Consensus 134 ~~~i~~~--~~~~~~~~~h~~~V~sl~~sp~~~~~l~~--g~~dg~v-lWd~~~~----~~~~~~~~~~~~g~~~~~~~~ 204 (902)
T 2oaj_A 134 SFKLDNL--QKSSFFPAARLSPIVSIQWNPRDIGTVLI--SYEYVTL-TYSLVEN----EIKQSFIYELPPFAPGGDFSE 204 (902)
T ss_dssp EEEECCH--HHHHTCSSSCCCCCCEEEEETTEEEEEEE--ECSSCEE-EEETTTT----EEEEEECCCBCTTCCCSTTCC
T ss_pred cceeccc--cccccccccCCCCeEEEEEccCCCCEEEE--EeCCCcE-EEECCCC----ceEEEEecccCCcCCCccccc
Confidence 1111000 000 0001122334444444432222211 2233444 5554321 23334433
Q ss_pred -----CCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeE--ee-----------------CCCCeEEEEEeec--
Q 005646 353 -----HSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRV--FP-----------------HSNYVTCVHFNPV-- 405 (686)
Q Consensus 353 -----h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~--~~-----------------h~~~V~~v~fsp~-- 405 (686)
|...|.+++|+|++ +|++++.|++|++||+.+++++.. +. |...|++++|+|.
T Consensus 205 ~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~ 284 (902)
T 2oaj_A 205 KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENN 284 (902)
T ss_dssp CTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSS
T ss_pred ccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCC
Confidence 46789999999999 999999999999999999988753 21 2447999999652
Q ss_pred -C-CCEEEEEEcC-----CcEEEEe-------------------------------------------------------
Q 005646 406 -D-DNYFISGSID-----GKVRIWA------------------------------------------------------- 423 (686)
Q Consensus 406 -~-~~~l~sgs~D-----g~V~iwd------------------------------------------------------- 423 (686)
+ +.+|++|+.| ..|++|+
T Consensus 285 pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~ 364 (902)
T 2oaj_A 285 PEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNP 364 (902)
T ss_dssp TTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSC
T ss_pred CCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCc
Confidence 2 2455666443 1444444
Q ss_pred ----------------cCCCcEEEE--------eccCCcEEE----------------------------------EEEc
Q 005646 424 ----------------VLSCHVVDW--------VDIRQIVTA----------------------------------VCYR 445 (686)
Q Consensus 424 ----------------~~~~~~~~~--------~~~~~~V~~----------------------------------v~~s 445 (686)
+.++..... ..|...|++ ++|+
T Consensus 365 ~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~s 444 (902)
T 2oaj_A 365 GLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPA 444 (902)
T ss_dssp SEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCC
T ss_pred eeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccc
Confidence 333321100 011233444 4457
Q ss_pred cCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEee---ccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc----
Q 005646 446 PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH---SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---- 518 (686)
Q Consensus 446 pdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---- 518 (686)
|+|++|++|+.||+|++||+.++.+.....+... .....|...|++++|+| ++.+|++++.|++|+||+..+
T Consensus 445 pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~ 523 (902)
T 2oaj_A 445 EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFY 523 (902)
T ss_dssp SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC-
T ss_pred ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCcccc
Confidence 8999999999999999999988743211111110 00126778999999999 889999999999999998531
Q ss_pred --------------------------------------------------------ceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 519 --------------------------------------------------------VIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 519 --------------------------------------------------------~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
.++|+||| +||+|+.|++|+|||
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd 602 (902)
T 2oaj_A 524 SVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLID 602 (902)
T ss_dssp --------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEE
T ss_pred CccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEE
Confidence 25688899 999999999999999
Q ss_pred CCCCCCCCccccccccccc-cccC-CcEEEec-----CCC-------------C-cCCCC---CCCCcccccCCCC----
Q 005646 543 CIGHEEPAHDQAKTIRSLE-RFTT-NASIAIP-----WCG-------------L-KCGNA---EKEPQLHVSDDDS---- 594 (686)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~v~~s-----~~g-------------~-~~~~~---~~g~~l~~~~~~~---- 594 (686)
+.++... .....+.+. .+.. ...++|+ .|| + ++|++ .+|..+..+.++.
T Consensus 603 ~~~~~~~---~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~ 679 (902)
T 2oaj_A 603 RRGPAII---YMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTS 679 (902)
T ss_dssp TTTTEEE---EEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCS
T ss_pred CCCCeEE---EEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCC
Confidence 8775411 001112232 3333 5667777 554 1 57888 7888777765442
Q ss_pred -Ccccc---cCCCc-----------------cccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccc
Q 005646 595 -PENLA---FAPAR-----------------FSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCL 653 (686)
Q Consensus 595 -~~~~~---~spd~-----------------~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (686)
..++. |+.+. ......++ .+.+..+++|+..+....... ....|.
T Consensus 680 ~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l-~~~~~~ir~~~~~~~k~~~k~-------------~~~~~~ 745 (902)
T 2oaj_A 680 KGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVL-ITGFDDIRLITLGKSKSTHKG-------------FKYPLA 745 (902)
T ss_dssp SCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEE-EECSSEEEEECTTCCCEEEEE-------------CSSCEE
T ss_pred CCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEE-EEeccceEEEeCccccceeeE-------------ccccee
Confidence 22221 32110 00112223 345888999997654322111 001122
Q ss_pred cCcc----------CCCCceEEEEecCCCeEeEEeecC
Q 005646 654 CTTS----------SHAWGLVIVTAGWDGRIRSFLNYG 681 (686)
Q Consensus 654 ~~~~----------~~~~g~~ivT~~~DG~Ir~w~~~g 681 (686)
.... ++..|..||++..||+||+|..-+
T Consensus 746 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~ 783 (902)
T 2oaj_A 746 ATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPD 783 (902)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTT
T ss_pred eeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcc
Confidence 2211 456689999999999999998543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=302.76 Aligned_cols=262 Identities=15% Similarity=0.171 Sum_probs=203.9
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCcee-cccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCe
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEI-QAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
...|++++..++++. .|+... . ....+ .+|.+.|++++|+| ++++||||+.||+|+|||+.+..
T Consensus 32 ~~~f~~~~~~~~~~~------~w~~~g--~------~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~ 97 (437)
T 3gre_A 32 YKEFGPIQEIVRSPN------MGNLRG--K------LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEII 97 (437)
T ss_dssp CGGGCCCCCCCCCCC------GGGCCC--C------EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHH
T ss_pred hhhcCCccccccccc------cccccc--e------EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccc
Confidence 345677787777765 254221 1 12345 78999999999999 99999999999999999987622
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
....+ +....+ +|...|.+++|+
T Consensus 98 ~~~~~--------------------------------------------------------~~~~~~-~h~~~v~~~~~~ 120 (437)
T 3gre_A 98 VGEVY--------------------------------------------------------SSSLTY-DCSSTVTQITMI 120 (437)
T ss_dssp TTCCC--------------------------------------------------------SCSEEE-ECSSCEEEEEEC
T ss_pred cCccc--------------------------------------------------------ceeeec-cCCCCEEEEEEe
Confidence 00000 112222 489999999999
Q ss_pred CCC-EEEEEECCCcEEEEECC---CCeeeeEee-------------CCCCeEEEE--EeecCCCEEEEEEcCCcEEEEec
Q 005646 364 KNN-YLLSASIDKTVRLWRVG---NDHCLRVFP-------------HSNYVTCVH--FNPVDDNYFISGSIDGKVRIWAV 424 (686)
Q Consensus 364 ~~~-~L~s~s~Dg~V~iWd~~---~~~~~~~~~-------------h~~~V~~v~--fsp~~~~~l~sgs~Dg~V~iwd~ 424 (686)
|++ +|++++.|++|++||+. +++++..+. +...+.++. ++| ++++|++|+.||.|++||+
T Consensus 121 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~ 199 (437)
T 3gre_A 121 PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDI 199 (437)
T ss_dssp TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEET
T ss_pred CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeC
Confidence 988 99999999999999995 554443332 567788887 446 7899999999999999999
Q ss_pred CCCcEEEEe-c--cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC---C
Q 005646 425 LSCHVVDWV-D--IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ---D 498 (686)
Q Consensus 425 ~~~~~~~~~-~--~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~---~ 498 (686)
++++.+... . |...|++++|+|++++|++|+.||.|++||++++++.... ...|...|++++|+|. +
T Consensus 200 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~s~~ 272 (437)
T 3gre_A 200 RTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSW-------SFGDHAPITHVEVCQFYGKN 272 (437)
T ss_dssp TTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE-------BCTTCEEEEEEEECTTTCTT
T ss_pred CCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEE-------ecCCCCceEEEEeccccCCC
Confidence 999877544 3 6789999999999999999999999999999987654321 1245567999988763 5
Q ss_pred CCeEEEEeCCCcEEEEeCCcc-----------------------------------------eeEcCCCCEEEEEeCCCc
Q 005646 499 SSKVMVSCADSQVRILQGPNV-----------------------------------------IGKYKDGKHIVSAGEDSN 537 (686)
Q Consensus 499 ~~~l~~~s~D~~I~iwd~~~~-----------------------------------------~~~~~dg~~l~sgs~Dg~ 537 (686)
+.+|++++.|+.|++||..+. ++++ ++++|++|+.||.
T Consensus 273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~ 351 (437)
T 3gre_A 273 SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSS 351 (437)
T ss_dssp EEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTE
T ss_pred ccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCe
Confidence 669999999999999997632 2344 5689999999999
Q ss_pred EEEEeCCCCC
Q 005646 538 VYMWNCIGHE 547 (686)
Q Consensus 538 V~iWd~~~~~ 547 (686)
|++||+.+++
T Consensus 352 i~~wd~~~~~ 361 (437)
T 3gre_A 352 IVMFSLNELS 361 (437)
T ss_dssp EEEEETTCGG
T ss_pred EEEEECCCcc
Confidence 9999998865
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=314.19 Aligned_cols=236 Identities=20% Similarity=0.326 Sum_probs=201.3
Q ss_pred ceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 244 QEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
..+++|.+.|++|+|+|+ +++|+||+.|++|+||++.+.....
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~------------------------------------ 419 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY------------------------------------ 419 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS------------------------------------
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc------------------------------------
Confidence 357899999999999986 5799999999999999987543100
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v 400 (686)
......+.+|...|.+++|+|++ +|++|+.|++|+|||+.+++++..+. |...|+++
T Consensus 420 ---------------------~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~ 478 (694)
T 3dm0_A 420 ---------------------GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSV 478 (694)
T ss_dssp ---------------------CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred ---------------------ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEE
Confidence 01345678999999999999999 99999999999999999999998887 99999999
Q ss_pred EEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe----ccCCcEEEEEEccCC--CEEEEEecCCcEEEEeCCCCeeeeee
Q 005646 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV----DIRQIVTAVCYRPDG--QGGIVGSMMGDCRFYNVSDNHLELDA 474 (686)
Q Consensus 401 ~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~----~~~~~V~~v~~spdg--~~l~~gs~dg~i~iwd~~~~~~~~~~ 474 (686)
+|+| ++++|++|+.|++|++||+......... .|...|++++|+|++ ..+++|+.||+|++||+.+.++..
T Consensus 479 ~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~-- 555 (694)
T 3dm0_A 479 AFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS-- 555 (694)
T ss_dssp EECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE--
T ss_pred EEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE--
Confidence 9999 9999999999999999998766554432 577889999999987 579999999999999998876542
Q ss_pred eEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc--------------ceeEcCCCCEEEEEeCCCcEEE
Q 005646 475 EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--------------VIGKYKDGKHIVSAGEDSNVYM 540 (686)
Q Consensus 475 ~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs~Dg~V~i 540 (686)
....|...|++++|+| ++.+|++++.|+.|++||..+ .++++|++.+|++++ |+.|+|
T Consensus 556 ------~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~i 627 (694)
T 3dm0_A 556 ------TLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKI 627 (694)
T ss_dssp ------EECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEE
T ss_pred ------EEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEE
Confidence 1345778899999999 889999999999999999753 367889999888776 556999
Q ss_pred EeCCCCC
Q 005646 541 WNCIGHE 547 (686)
Q Consensus 541 Wd~~~~~ 547 (686)
||+.++.
T Consensus 628 wd~~~~~ 634 (694)
T 3dm0_A 628 WDLESKS 634 (694)
T ss_dssp EETTTTE
T ss_pred EECCCCC
Confidence 9998764
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=284.10 Aligned_cols=230 Identities=21% Similarity=0.341 Sum_probs=193.8
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
...+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--------------------------------------- 65 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE--------------------------------------- 65 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC---------------------------------------
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch---------------------------------------
Confidence 35678999999999999999999999999999999997765
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~ 401 (686)
.+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+.+...|.+++
T Consensus 66 -----------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 122 (369)
T 3zwl_B 66 -----------------------RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVE 122 (369)
T ss_dssp -----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred -----------------------hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEE
Confidence 345567899999999999999 99999999999999999999999999999999999
Q ss_pred EeecCCCEEEEEEcC-----CcEEEEecCCCcE------------EEEeccCC--cEEEEEEccCCCEEEEEecCCcEEE
Q 005646 402 FNPVDDNYFISGSID-----GKVRIWAVLSCHV------------VDWVDIRQ--IVTAVCYRPDGQGGIVGSMMGDCRF 462 (686)
Q Consensus 402 fsp~~~~~l~sgs~D-----g~V~iwd~~~~~~------------~~~~~~~~--~V~~v~~spdg~~l~~gs~dg~i~i 462 (686)
|+| ++++|++++.+ |.|++||+..... .....+.. .+.+++|+|++++|++++.||.|++
T Consensus 123 ~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 201 (369)
T 3zwl_B 123 FSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISK 201 (369)
T ss_dssp ECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred Ecc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEE
Confidence 999 99999999999 9999999976531 23334444 8999999999999999999999999
Q ss_pred EeCCC-CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc--------------ceeEcCCCC
Q 005646 463 YNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--------------VIGKYKDGK 527 (686)
Q Consensus 463 wd~~~-~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~--------------~~~~~~dg~ 527 (686)
||+.+ ..... ....|...|.+++|+| ++.+|++++.|+.|++||..+ .++++|+++
T Consensus 202 ~d~~~~~~~~~--------~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (369)
T 3zwl_B 202 YDVSNNYEYVD--------SIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKE 272 (369)
T ss_dssp EETTTTTEEEE--------EEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSS
T ss_pred EECCCCcEeEE--------EEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCc
Confidence 99987 34322 1234667899999999 789999999999999999764 367888999
Q ss_pred EEEEEeCCCcEEEEeCC
Q 005646 528 HIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 528 ~l~sgs~Dg~V~iWd~~ 544 (686)
+|++++.++.+.+|...
T Consensus 273 ~l~~~~~~~~~~~~~~~ 289 (369)
T 3zwl_B 273 FIILGGGQEAKDVTTTS 289 (369)
T ss_dssp EEEEEECCC--------
T ss_pred eEEEeecCCCceEEEEe
Confidence 99999999955555443
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-33 Score=301.62 Aligned_cols=310 Identities=13% Similarity=0.127 Sum_probs=217.2
Q ss_pred ceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 244 QEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
+...+|...|++|+|+| ++++||+|+.||+|+|||+.+++..
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~------------------------------------- 155 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP------------------------------------- 155 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------------------------------
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------------------------------
Confidence 34567999999999999 5779999999999999999766421
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC-CC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCe
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYV 397 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V 397 (686)
....+.+|.+.|++|+|+| ++ +|++++.|++|++||++++....... +...+
T Consensus 156 -----------------------~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 212 (435)
T 4e54_B 156 -----------------------TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWF 212 (435)
T ss_dssp -----------------------EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCC
T ss_pred -----------------------eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccE
Confidence 2234568999999999998 45 99999999999999998776544443 44578
Q ss_pred EEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCC-EEEEEecCCcEEEEeCCCCeeeeeeeE
Q 005646 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEI 476 (686)
Q Consensus 398 ~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~-~l~~gs~dg~i~iwd~~~~~~~~~~~~ 476 (686)
.+++|+| ++.+|++|+.||.|++||++...+..+..|...|++++|+|++. +|++|+.|+.|+|||+.+.+.....
T Consensus 213 ~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-- 289 (435)
T 4e54_B 213 CSLDVSA-SSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-- 289 (435)
T ss_dssp CCEEEET-TTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC--
T ss_pred EEEEECC-CCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE--
Confidence 9999999 99999999999999999998877777788999999999999886 6778999999999999876543211
Q ss_pred EeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCcccccc
Q 005646 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKT 556 (686)
Q Consensus 477 ~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~ 556 (686)
.....|...|++++|+| +|++|++|+.||.|+|||+.++..........
T Consensus 290 ---~~~~~h~~~v~~~~~sp----------------------------dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 338 (435)
T 4e54_B 290 ---LYSLPHRHPVNAACFSP----------------------------DGARLLTTDQKSEIRVYSASQWDCPLGLIPHP 338 (435)
T ss_dssp ---SBCCBCSSCEEECCBCT----------------------------TSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred ---EEeeeccccccceeECC----------------------------CCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence 12345778899999999 89999999999999999998876322211111
Q ss_pred ccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCcCCCcccccc
Q 005646 557 IRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSS 636 (686)
Q Consensus 557 ~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~ 636 (686)
...... ...+...|.+ ........+++++.. .+.....++.+.+|+.++......+
T Consensus 339 ~~~~~~---~~~~~~~~~~----------------~~~~~~~~~~~d~~~---~~~~~~~~~~i~iwd~~~g~~~~~l-- 394 (435)
T 4e54_B 339 HRHFQH---LTPIKAAWHP----------------RYNLIVVGRYPDPNF---KSCTPYELRTIDVFDGNSGKMMCQL-- 394 (435)
T ss_dssp CCCCSS---SCCCBCEECS----------------SSSCEEEECCCCTTS---CCSSTTCCCCEEEECSSSCCEEEEE--
T ss_pred cccccc---ceeEEEEEcC----------------CCCEEEEEEcCCCCe---EEEEecCCCEEEEEECCCCcEEEEE--
Confidence 110000 0000011110 001112234555321 2223445567889997665532221
Q ss_pred ccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEeec
Q 005646 637 ASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNY 680 (686)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~~ 680 (686)
...+... ..++..++++|.+||+|+ |++||||+..
T Consensus 395 ----~~~~~~~----v~s~~~fspdg~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 395 ----YDPESSG----ISSLNEFNPMGDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp ----CCSSCCC----CCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred ----eCCCCCc----EEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence 0011000 111123567799999987 8899999753
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-31 Score=290.80 Aligned_cols=264 Identities=19% Similarity=0.338 Sum_probs=223.9
Q ss_pred eecccCc-ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 005646 199 VVDKQGE-GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (686)
Q Consensus 199 ~~~~~~~-~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW 277 (686)
...|... +.++.++++.+++|+.|+.|++|+...... ...+.+|.+.|++++|+|++ +|++|+.||+|++|
T Consensus 117 l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~-------~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 117 LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKF-------LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE-------EEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred EcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcE-------EEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3455555 467888999999999999999999765432 35677899999999999988 99999999999999
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCe
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 357 (686)
|+.+++ .+..+.+|...|
T Consensus 189 d~~~~~--------------------------------------------------------------~~~~~~~h~~~v 206 (464)
T 3v7d_B 189 DIKKGC--------------------------------------------------------------CTHVFEGHNSTV 206 (464)
T ss_dssp ETTTTE--------------------------------------------------------------EEEEECCCSSCE
T ss_pred ECCCCc--------------------------------------------------------------EEEEECCCCCcc
Confidence 998775 345566899999
Q ss_pred eEEEee--CCC-EEEEEECCCcEEEEECCCCee-----------------------eeEee-CCCCeEEEEEeecCCCEE
Q 005646 358 LDLSWS--KNN-YLLSASIDKTVRLWRVGNDHC-----------------------LRVFP-HSNYVTCVHFNPVDDNYF 410 (686)
Q Consensus 358 ~~l~~s--~~~-~L~s~s~Dg~V~iWd~~~~~~-----------------------~~~~~-h~~~V~~v~fsp~~~~~l 410 (686)
.+++|+ +++ +|++++.|++|++||+.++.. +..+. |...|.++ +| ++++|
T Consensus 207 ~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~-~~~~l 283 (464)
T 3v7d_B 207 RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG-HGNIV 283 (464)
T ss_dssp EEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE-ETTEE
T ss_pred EEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC-CCCEE
Confidence 999998 465 999999999999999988753 22333 88888887 45 78999
Q ss_pred EEEEcCCcEEEEecCCCcEEE-EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCe
Q 005646 411 ISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (686)
Q Consensus 411 ~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I 489 (686)
++|+.||.|++||+++++.+. +..|...|++++|+|+++++++|+.||.|++||+.+++.... ...|...|
T Consensus 284 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~--------~~~h~~~v 355 (464)
T 3v7d_B 284 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT--------LQGHTALV 355 (464)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE--------ECCCSSCE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE--------EeCCCCcE
Confidence 999999999999999998774 556889999999999999999999999999999998875432 24577889
Q ss_pred EEEEEeCCCCCeEEEEeCCCcEEEEeCCc--------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 490 TGFQFLPQDSSKVMVSCADSQVRILQGPN--------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 490 ~~l~fsp~~~~~l~~~s~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.++.|++ ..+++++.|+.|++||..+ .+++++++++|++|+ ||.|+|||+.+++
T Consensus 356 ~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 356 GLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp EEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred EEEEEcC---CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 9999975 7999999999999999753 356788999999999 8999999999876
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=320.45 Aligned_cols=235 Identities=14% Similarity=0.294 Sum_probs=206.3
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+.+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~--------------------------------------- 46 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV--------------------------------------- 46 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------------------------
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc---------------------------------------
Confidence 35688999999999999999999999999999999998775
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v 400 (686)
.+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+. |...|+++
T Consensus 47 -----------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~ 103 (814)
T 3mkq_A 47 -----------------------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103 (814)
T ss_dssp -----------------------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred -----------------------eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEE
Confidence 344556799999999999999 99999999999999999999998888 99999999
Q ss_pred EEeecCCCEEEEEEcCCcEEEEecCCC-cEE-EEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEE
Q 005646 401 HFNPVDDNYFISGSIDGKVRIWAVLSC-HVV-DWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (686)
Q Consensus 401 ~fsp~~~~~l~sgs~Dg~V~iwd~~~~-~~~-~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~ 477 (686)
+|+| ++.+|++++.||.|++||+.++ ... ....|...|++++|+| +++.+++++.||.|++||+.++......
T Consensus 104 ~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--- 179 (814)
T 3mkq_A 104 AVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL--- 179 (814)
T ss_dssp EECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE---
T ss_pred EEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE---
Confidence 9999 9999999999999999999987 443 5567889999999999 8999999999999999999876543211
Q ss_pred eeccccCCCCCeEEEEEeCC-CCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEE
Q 005646 478 VHSKKKAPCKRITGFQFLPQ-DSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 478 ~~~~~~~~~~~I~~l~fsp~-~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iW 541 (686)
...+...+..++|+|. ++..+++++.|+.|++||..+ .++++|++++|++++.||.|++|
T Consensus 180 ----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vw 255 (814)
T 3mkq_A 180 ----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255 (814)
T ss_dssp ----ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred ----ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 1234477999999984 567999999999999999542 36789999999999999999999
Q ss_pred eCCCCC
Q 005646 542 NCIGHE 547 (686)
Q Consensus 542 d~~~~~ 547 (686)
|+.+++
T Consensus 256 d~~~~~ 261 (814)
T 3mkq_A 256 NSSTYK 261 (814)
T ss_dssp ETTTCS
T ss_pred ECCCCc
Confidence 998865
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=290.84 Aligned_cols=286 Identities=13% Similarity=0.170 Sum_probs=228.3
Q ss_pred ecccCcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC----C---CEEEEEeCCC
Q 005646 200 VDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD----G---QYLASAGDDG 272 (686)
Q Consensus 200 ~~~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g---~~Lasgs~Dg 272 (686)
..|...+.++.++++.+++++.|+.|+||++...... ........+.+|...|++++|+|+ | ++|++++.||
T Consensus 13 ~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 13 KAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNE-NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp SCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTC-CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred hhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccc-cCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 3577788888888899999999999999998765411 112234567789999999999999 9 9999999999
Q ss_pred cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc
Q 005646 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (686)
Q Consensus 273 ~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (686)
.|++|++.+++.... ..+..+.+
T Consensus 92 ~i~iw~~~~~~~~~~---------------------------------------------------------~~~~~~~~ 114 (397)
T 1sq9_A 92 DLLFYRITREDETKK---------------------------------------------------------VIFEKLDL 114 (397)
T ss_dssp CEEEEEEEECTTTCC---------------------------------------------------------EEEEEECC
T ss_pred CEEEEEccCCccccc---------------------------------------------------------ccceeecc
Confidence 999999987652000 01445566
Q ss_pred C-----CCCeeEEEee----CCC-E-EEEEECCCcEEEEECCC------Ceeee-----Ee-------e-CCCCeEEEEE
Q 005646 353 H-----SGEILDLSWS----KNN-Y-LLSASIDKTVRLWRVGN------DHCLR-----VF-------P-HSNYVTCVHF 402 (686)
Q Consensus 353 h-----~~~V~~l~~s----~~~-~-L~s~s~Dg~V~iWd~~~------~~~~~-----~~-------~-h~~~V~~v~f 402 (686)
| ...|.+++|+ |++ + |++++.|+.|++||+.+ ++++. .+ . |...|++++|
T Consensus 115 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 194 (397)
T 1sq9_A 115 LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 194 (397)
T ss_dssp SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE
T ss_pred cccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEE
Confidence 7 5899999999 888 8 99999999999999998 66655 55 2 7899999999
Q ss_pred eecCCCEEEEEEcCCcEEEEecCCCcEEEEe-c---c---CCcEEEEEEccCCCEEEEEecC---CcEEEEeCCCCeeee
Q 005646 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-D---I---RQIVTAVCYRPDGQGGIVGSMM---GDCRFYNVSDNHLEL 472 (686)
Q Consensus 403 sp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~---~---~~~V~~v~~spdg~~l~~gs~d---g~i~iwd~~~~~~~~ 472 (686)
+| ++ +|++++.||.|++||+++++.+... . | ...|++++|+|++++|++++.| |.|++||+.+++...
T Consensus 195 ~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~ 272 (397)
T 1sq9_A 195 SE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 272 (397)
T ss_dssp CT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred CC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccc
Confidence 99 88 9999999999999999998877544 4 5 8899999999999999999999 999999998876543
Q ss_pred eeeEEee-----ccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-----------------------------
Q 005646 473 DAEICVH-----SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN----------------------------- 518 (686)
Q Consensus 473 ~~~~~~~-----~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~----------------------------- 518 (686)
....... .....|...|.+++|+| ++.+|++++.|+.|++||..+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 351 (397)
T 1sq9_A 273 SLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDS 351 (397)
T ss_dssp EECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred eeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccccc
Confidence 2110000 00011678899999999 789999999999999998531
Q ss_pred -------ceeEcCCC----------CEEEEEeCCCcEEEEeCCCC
Q 005646 519 -------VIGKYKDG----------KHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 519 -------~~~~~~dg----------~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.++|+|++ ++|++|+.||.|+||++.++
T Consensus 352 ~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 352 LAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 35677888 79999999999999999875
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=285.99 Aligned_cols=276 Identities=14% Similarity=0.125 Sum_probs=214.5
Q ss_pred eeecccCccee--eecCC-CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCc
Q 005646 198 CVVDKQGEGER--VRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGV 273 (686)
Q Consensus 198 ~~~~~~~~~~~--~s~~~-~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~ 273 (686)
....|...+.+ |++++ +.+++|+.|+.|+||++....... ...+.+|...|++++|+| ++++|++++.|+.
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-----FIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE-----EECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce-----eeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 33455666654 55666 689999999999999987543321 112347999999999999 7899999999999
Q ss_pred EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccC
Q 005646 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (686)
Q Consensus 274 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 353 (686)
|++||+.+.. +..+ ....+|
T Consensus 143 i~iwd~~~~~-~~~~-----------------------------------------------------------~~~~~~ 162 (383)
T 3ei3_B 143 TTLRDFSGSV-IQVF-----------------------------------------------------------AKTDSW 162 (383)
T ss_dssp EEEEETTSCE-EEEE-----------------------------------------------------------ECCCCS
T ss_pred EEEEECCCCc-eEEE-----------------------------------------------------------eccCCC
Confidence 9999997532 1111 111346
Q ss_pred CCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCC-EEEEEEcCCcEEEEecCC----
Q 005646 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDN-YFISGSIDGKVRIWAVLS---- 426 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~-~l~sgs~Dg~V~iwd~~~---- 426 (686)
...|.+++|+|++ +|++++.|+.|++||+ +++++..+. |...|++++|+| ++. +|++|+.|++|++||+++
T Consensus 163 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~ 240 (383)
T 3ei3_B 163 DYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDK 240 (383)
T ss_dssp SCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCST
T ss_pred CCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcc
Confidence 6889999999999 9999999999999999 466666666 999999999999 777 999999999999999998
Q ss_pred CcEEEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCC----------CCeEEEEEe
Q 005646 427 CHVVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC----------KRITGFQFL 495 (686)
Q Consensus 427 ~~~~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----------~~I~~l~fs 495 (686)
+.++....|...|++++|+| +|++|++++.||.|++||+.+.+......... .....|. ..+..+.|+
T Consensus 241 ~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~s 319 (383)
T 3ei3_B 241 NSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP-HRQFQHLTPIKATWHPMYDLIVAGRY 319 (383)
T ss_dssp TCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC-BCCCTTSCCCCCEECSSSSEEEEECB
T ss_pred cceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc-ccccccccceEEeccCCCCceEEEec
Confidence 66777778999999999999 99999999999999999998776543221111 0111122 334446666
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCc-----------------ceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 496 PQDSSKVMVSCADSQVRILQGPN-----------------VIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 496 p~~~~~l~~~s~D~~I~iwd~~~-----------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
| ++.+ +++.|+.|++||..+ .++|+|++++|++|+ ||.|+|||+++
T Consensus 320 ~-dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 320 P-DDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp C-CTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred C-Cccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 6 4444 677899999999642 247999999999998 99999999975
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=288.69 Aligned_cols=277 Identities=18% Similarity=0.294 Sum_probs=220.7
Q ss_pred cccCcceeeecC------CCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC----CCEEEEEeC
Q 005646 201 DKQGEGERVRLN------EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD----GQYLASAGD 270 (686)
Q Consensus 201 ~~~~~~~~~s~~------~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g~~Lasgs~ 270 (686)
.|...+.++.++ ...+++++.++.|+||++..... ...........|...|++++|+|+ |++|++|+.
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE--IRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC--EEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE--EEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 466677666554 34577778888999999875432 111111122247789999999999 679999999
Q ss_pred CCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe
Q 005646 271 DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (686)
Q Consensus 271 Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (686)
||.|++||+.+++ .+..+
T Consensus 94 dg~i~v~d~~~~~--------------------------------------------------------------~~~~~ 111 (366)
T 3k26_A 94 RGIIRIINPITMQ--------------------------------------------------------------CIKHY 111 (366)
T ss_dssp TCEEEEECTTTCC--------------------------------------------------------------EEEEE
T ss_pred CCEEEEEEchhce--------------------------------------------------------------Eeeee
Confidence 9999999998765 34556
Q ss_pred ccCCCCeeEEEeeC-CC-EEEEEECCCcEEEEECCCCeeeeEe----eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEec
Q 005646 351 HGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVF----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (686)
Q Consensus 351 ~~h~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWd~~~~~~~~~~----~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~ 424 (686)
.+|...|.+++|+| ++ +|++++.|++|++||+.+++++..+ .|...|++++|+| ++++|++++.||.|++||+
T Consensus 112 ~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~ 190 (366)
T 3k26_A 112 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRI 190 (366)
T ss_dssp ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEEC
Confidence 67999999999999 77 9999999999999999999999888 3999999999999 9999999999999999999
Q ss_pred CCCcEEEE-----------------------------eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee--
Q 005646 425 LSCHVVDW-----------------------------VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD-- 473 (686)
Q Consensus 425 ~~~~~~~~-----------------------------~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~-- 473 (686)
++++.... ..|...|++++|+ ++++++++.||.|++||+.+......
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 268 (366)
T 3k26_A 191 NSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKI 268 (366)
T ss_dssp CSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGC
T ss_pred CCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccccccc
Confidence 98654321 1278899999998 77999999999999999987643110
Q ss_pred ----eeEEeeccccCCCCCeEEEEEeCCC--CCeEEEEeCCCcEEEEeCCc---------------------ceeEcCCC
Q 005646 474 ----AEICVHSKKKAPCKRITGFQFLPQD--SSKVMVSCADSQVRILQGPN---------------------VIGKYKDG 526 (686)
Q Consensus 474 ----~~~~~~~~~~~~~~~I~~l~fsp~~--~~~l~~~s~D~~I~iwd~~~---------------------~~~~~~dg 526 (686)
...........|...|++++|+| + +.+|++++.|+.|++||..+ .++|+|++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 347 (366)
T 3k26_A 269 KPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS 347 (366)
T ss_dssp CTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS
T ss_pred ccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC
Confidence 01111222345667899999999 6 89999999999999999753 25788899
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 005646 527 KHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 527 ~~l~sgs~Dg~V~iWd~~~ 545 (686)
++|++|+.||.|+|||+.+
T Consensus 348 ~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 348 SILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SEEEEEETTSEEEEEEC--
T ss_pred CeEEEEeCCCEEEEEEecC
Confidence 9999999999999999863
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-33 Score=294.30 Aligned_cols=241 Identities=12% Similarity=0.157 Sum_probs=189.1
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
...+|+++++++++++.|+.|+||+...... .....+.+|...|++++|+|++++|++++.|++|+|||+.+++.
T Consensus 15 ~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 15 YEHAFNSQRTEFVTTTATNQVELYEQDGNGW-----KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp SCCEECSSSSEEECCCSSSCBCEEEEETTEE-----EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred EEEEECCCCCEEEEecCCCEEEEEEccCCce-----EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 4467788889999999999999999875421 22356788999999999999999999999999999999987540
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
. ++...+.+|...|.+++|+|
T Consensus 90 ~-----------------------------------------------------------~~~~~~~~~~~~v~~~~~~~ 110 (377)
T 3dwl_C 90 W-----------------------------------------------------------KQTLVLLRLNRAATFVRWSP 110 (377)
T ss_dssp C-----------------------------------------------------------CCEEECCCCSSCEEEEECCT
T ss_pred e-----------------------------------------------------------eeeeEecccCCceEEEEECC
Confidence 0 23455677999999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCe---eeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC------------
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDH---CLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS------------ 426 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~---~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~------------ 426 (686)
++ +|++++.|++|++||+.+++ +...+. |...|++++|+| ++++|++|+.|++|++||+..
T Consensus 111 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 189 (377)
T 3dwl_C 111 NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVW 189 (377)
T ss_dssp TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSS
T ss_pred CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCcccccc
Confidence 99 99999999999999999887 355555 899999999999 999999999999999999952
Q ss_pred ------CcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCC
Q 005646 427 ------CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (686)
Q Consensus 427 ------~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~ 500 (686)
++++....|...|++++|+|+|++|++++.||.|++||+.+++.... .......|...|++++|+| ++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~v~~~~~s~-~~~ 264 (377)
T 3dwl_C 190 GSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR----ALITVKLSQLPLRSLLWAN-ESA 264 (377)
T ss_dssp CSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE----ECCCEECSSSCEEEEEEEE-TTE
T ss_pred ccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce----eeEeecCCCCceEEEEEcC-CCC
Confidence 34444448889999999999999999999999999999998765211 1112345678899999999 777
Q ss_pred eEEEEeCCCcEEEEeC
Q 005646 501 KVMVSCADSQVRILQG 516 (686)
Q Consensus 501 ~l~~~s~D~~I~iwd~ 516 (686)
+|++++.++.+ +|+.
T Consensus 265 ~l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 265 IVAAGYNYSPI-LLQG 279 (377)
T ss_dssp EEEEESSSSEE-EECC
T ss_pred EEEEEcCCcEE-EEEe
Confidence 88777666655 6654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=293.79 Aligned_cols=236 Identities=12% Similarity=0.143 Sum_probs=184.2
Q ss_pred ecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEee
Q 005646 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (686)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (686)
++.|.++|++++|+|+|++||+|+.|+.|+|||+.++..
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~----------------------------------------- 45 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW----------------------------------------- 45 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----------------------------------------
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-----------------------------------------
Confidence 445788999999999999999999999999999987631
Q ss_pred ccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCe---eeeEe-eCCCCeEEE
Q 005646 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH---CLRVF-PHSNYVTCV 400 (686)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~---~~~~~-~h~~~V~~v 400 (686)
+.+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++ +...+ .|...|+++
T Consensus 46 -------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~ 106 (377)
T 3dwl_C 46 -------------------KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFV 106 (377)
T ss_dssp -------------------EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEE
T ss_pred -------------------EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEE
Confidence 1234456799999999999999 99999999999999999887 44444 499999999
Q ss_pred EEeecCCCEEEEEEcCCcEEEEecCCCc----EEEEec-cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee--
Q 005646 401 HFNPVDDNYFISGSIDGKVRIWAVLSCH----VVDWVD-IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD-- 473 (686)
Q Consensus 401 ~fsp~~~~~l~sgs~Dg~V~iwd~~~~~----~~~~~~-~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~-- 473 (686)
+|+| ++++|++|+.|+.|++||+++++ ...+.. |...|++++|+|++++|++++.||.|++||+........
T Consensus 107 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 107 RWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp ECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred EECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence 9999 99999999999999999999886 334455 889999999999999999999999999999864332110
Q ss_pred --------eeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-------------------ceeEcCCC
Q 005646 474 --------AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-------------------VIGKYKDG 526 (686)
Q Consensus 474 --------~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-------------------~~~~~~dg 526 (686)
......... .|...|++++|+| ++.+|++++.|+.|++||..+ .++|+|++
T Consensus 186 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 263 (377)
T 3dwl_C 186 ASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES 263 (377)
T ss_dssp SCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred ccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence 001111112 6888999999999 789999999999999999542 35688899
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 005646 527 KHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 527 ~~l~sgs~Dg~V~iWd~~~ 545 (686)
++|++|+.|+.+ +|+...
T Consensus 264 ~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 264 AIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp EEEEEESSSSEE-EECCCC
T ss_pred CEEEEEcCCcEE-EEEeCC
Confidence 999999877665 777654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=287.60 Aligned_cols=236 Identities=18% Similarity=0.252 Sum_probs=190.6
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
..+.+|.+.|++++|+|+|++||||+.|++|+|||+.++..
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~--------------------------------------- 47 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ--------------------------------------- 47 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------------------------------
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------------------------------
Confidence 34678999999999999999999999999999999987641
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC--C-EEEEEECCCcEEEEECCCCe--eeeEee-CCCCe
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYV 397 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~--~~~~~~-h~~~V 397 (686)
..+..+.+|.+.|.+++|+++ + +|++++.|++|++||+.+++ ++..+. |...|
T Consensus 48 ---------------------~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V 106 (316)
T 3bg1_A 48 ---------------------ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSV 106 (316)
T ss_dssp ---------------------EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCC
T ss_pred ---------------------EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCce
Confidence 124567789999999999863 5 99999999999999999874 455555 99999
Q ss_pred EEEEEeecC--CCEEEEEEcCCcEEEEecCCCcEE----EEeccCCcEEEEEEccC-----------------CCEEEEE
Q 005646 398 TCVHFNPVD--DNYFISGSIDGKVRIWAVLSCHVV----DWVDIRQIVTAVCYRPD-----------------GQGGIVG 454 (686)
Q Consensus 398 ~~v~fsp~~--~~~l~sgs~Dg~V~iwd~~~~~~~----~~~~~~~~V~~v~~spd-----------------g~~l~~g 454 (686)
++++|+| + +.+|++|+.|++|++||++++... ....|...|.+++|+|+ +++|++|
T Consensus 107 ~~v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 185 (316)
T 3bg1_A 107 NSVCWAP-HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG 185 (316)
T ss_dssp CEEEECC-TTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECC
T ss_pred EEEEECC-CCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEe
Confidence 9999999 5 789999999999999999876321 23457788999999997 4789999
Q ss_pred ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC---CCeEEEEeCCCcEEEEeCCc-------------
Q 005646 455 SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD---SSKVMVSCADSQVRILQGPN------------- 518 (686)
Q Consensus 455 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~---~~~l~~~s~D~~I~iwd~~~------------- 518 (686)
+.|++|++||+...... ........|...|.+++|+|+. ..+|++++.|++|++|+..+
T Consensus 186 s~D~~v~lWd~~~~~~~-----~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~ 260 (316)
T 3bg1_A 186 GCDNLIKLWKEEEDGQW-----KEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK 260 (316)
T ss_dssp BTTSBCCEEEECTTSCE-----EEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE
T ss_pred cCCCeEEEEEeCCCCcc-----ceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc
Confidence 99999999999754210 0111245688899999999943 37899999999999998542
Q ss_pred ------ceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 519 ------VIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 519 ------~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
.++|+|++++|++|+.|++|+||+...
T Consensus 261 ~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 261 FNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 267889999999999999999999864
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-32 Score=285.09 Aligned_cols=274 Identities=13% Similarity=0.167 Sum_probs=220.4
Q ss_pred ccCccee--eecCCCcc-ceeec---cceEEEEEcCCccccccccccCceecccCCceEEEEEeeC---CCEEEEEeCCC
Q 005646 202 KQGEGER--VRLNEEDA-MFCSK---VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD---GQYLASAGDDG 272 (686)
Q Consensus 202 ~~~~~~~--~s~~~~~l-~~g~~---d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasgs~Dg 272 (686)
|...+.+ |++++..+ ++++. |+.|+||++....... ....+|...|++++|+|+ |++|++|+.||
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL------LREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE------EEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc------eeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 5555554 55666545 45555 8999999987643211 112369999999999998 79999999999
Q ss_pred cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc
Q 005646 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (686)
Q Consensus 273 ~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (686)
.|++||+.+++ .++..+.+
T Consensus 91 ~i~iwd~~~~~-------------------------------------------------------------~~~~~~~~ 109 (357)
T 3i2n_A 91 NLHIWNLEAPE-------------------------------------------------------------MPVYSVKG 109 (357)
T ss_dssp CEEEECTTSCS-------------------------------------------------------------SCSEEECC
T ss_pred eEEEEeCCCCC-------------------------------------------------------------ccEEEEEe
Confidence 99999997654 24566778
Q ss_pred CCCCeeEEEe------eCCC-EEEEEECCCcEEEEECCCCe-eeeEee-CC----CCeEEEE----EeecCCCEEEEEEc
Q 005646 353 HSGEILDLSW------SKNN-YLLSASIDKTVRLWRVGNDH-CLRVFP-HS----NYVTCVH----FNPVDDNYFISGSI 415 (686)
Q Consensus 353 h~~~V~~l~~------s~~~-~L~s~s~Dg~V~iWd~~~~~-~~~~~~-h~----~~V~~v~----fsp~~~~~l~sgs~ 415 (686)
|...|.++.| +|++ +|++++.|++|++||+.+++ ++..+. |. ..|++++ |+| ++++|++++.
T Consensus 110 ~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~ 188 (357)
T 3i2n_A 110 HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYD 188 (357)
T ss_dssp CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEET
T ss_pred cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEcc
Confidence 9999999965 5777 99999999999999999887 666665 33 4899999 677 9999999999
Q ss_pred CCcEEEEecCCCcEEEEeccCCcEEEEEEcc---CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEE
Q 005646 416 DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP---DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492 (686)
Q Consensus 416 Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp---dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l 492 (686)
||.|++||+++++......+...|++++|+| +++++++++.||.|++||+.+++........ ....|...|+++
T Consensus 189 d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~v~~~ 265 (357)
T 3i2n_A 189 NGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASV---SEKAHKSTVWQV 265 (357)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEE---EEECCSSCEEEE
T ss_pred CCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeee---ccCCCcCCEEEE
Confidence 9999999999999988888999999999999 9999999999999999999876543322111 123577899999
Q ss_pred EEeCCCCC-eEEEEeCCCcEEEEeCC----------------------------------cceeEcCCCCEEE-EEeCCC
Q 005646 493 QFLPQDSS-KVMVSCADSQVRILQGP----------------------------------NVIGKYKDGKHIV-SAGEDS 536 (686)
Q Consensus 493 ~fsp~~~~-~l~~~s~D~~I~iwd~~----------------------------------~~~~~~~dg~~l~-sgs~Dg 536 (686)
+|+| ++. ++++++.|+.|++||.. +.++|+|++++|+ +++.||
T Consensus 266 ~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~ 344 (357)
T 3i2n_A 266 RHLP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ 344 (357)
T ss_dssp EEET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred EECC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC
Confidence 9999 555 89999999999999964 2467899999998 899999
Q ss_pred cEEEEeCCCCC
Q 005646 537 NVYMWNCIGHE 547 (686)
Q Consensus 537 ~V~iWd~~~~~ 547 (686)
.|+||++.+.+
T Consensus 345 ~i~iw~~~~~~ 355 (357)
T 3i2n_A 345 TVRVLIVTKLN 355 (357)
T ss_dssp EEEEEEECC--
T ss_pred cEEEEECCCcc
Confidence 99999998754
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=298.74 Aligned_cols=277 Identities=17% Similarity=0.200 Sum_probs=203.1
Q ss_pred cccCcceeeec---CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEE
Q 005646 201 DKQGEGERVRL---NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRL 276 (686)
Q Consensus 201 ~~~~~~~~~s~---~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~v 276 (686)
.+...+.++.+ +++.+|+|+.||.|+||++....... ...+.+|.+.|++|+|+| ++++|+||+.||+|+|
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~-----~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT-----FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE-----EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee-----EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 45555655544 34578999999999999987543321 234568999999999998 7899999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.++.... + .....+...
T Consensus 192 wd~~~~~~~~-~-----------------------------------------------------------~~~~~~~~~ 211 (435)
T 4e54_B 192 QDFKGNILRV-F-----------------------------------------------------------ASSDTINIW 211 (435)
T ss_dssp EETTSCEEEE-E-----------------------------------------------------------ECCSSCSCC
T ss_pred eeccCCceeE-E-----------------------------------------------------------eccCCCCcc
Confidence 9987543111 0 111234556
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE----
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV---- 430 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~---- 430 (686)
+.+++|+|++ +|++|+.|++|++||++.. ++..+. |...|++++|+|....+|++|+.|++|+|||+++.+..
T Consensus 212 ~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~ 290 (435)
T 4e54_B 212 FCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL 290 (435)
T ss_dssp CCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS
T ss_pred EEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE
Confidence 8899999999 9999999999999999754 445555 99999999999944568999999999999999876533
Q ss_pred EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe----
Q 005646 431 DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC---- 506 (686)
Q Consensus 431 ~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s---- 506 (686)
....|...|++++|+|+|++|++++.||.|+|||+.++....... .+.........+....|+| +...+++++
T Consensus 291 ~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~ 367 (435)
T 4e54_B 291 YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI--PHPHRHFQHLTPIKAAWHP-RYNLIVVGRYPDP 367 (435)
T ss_dssp BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC--CCCCCCCSSSCCCBCEECS-SSSCEEEECCCCT
T ss_pred EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe--cccccccccceeEEEEEcC-CCCEEEEEEcCCC
Confidence 345688999999999999999999999999999998876543211 1111111111233345565 344444443
Q ss_pred --------CCCcEEEEeCCcc-----------------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 507 --------ADSQVRILQGPNV-----------------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 507 --------~D~~I~iwd~~~~-----------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.++.|++||..+. .+|+|+|++|++|+ |++|+||++++++
T Consensus 368 ~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 368 NFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp TSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred CeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 3467999986431 35899999999986 8899999999875
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=282.22 Aligned_cols=266 Identities=14% Similarity=0.218 Sum_probs=219.2
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
..+|+++++.+++++.++.|+||+...... .....+.+|...|++++|+|++++|++++.||.|++||+.+++..
T Consensus 13 ~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 87 (372)
T 1k8k_C 13 CHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 87 (372)
T ss_dssp EEEECTTSSEEEEECSSSEEEEEEEETTEE-----EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee
Confidence 356677888999999999999999865431 123567789999999999999999999999999999999876522
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
. ...+..|...|.+++|+|+
T Consensus 88 ~------------------------------------------------------------~~~~~~~~~~v~~~~~~~~ 107 (372)
T 1k8k_C 88 P------------------------------------------------------------TLVILRINRAARCVRWAPN 107 (372)
T ss_dssp E------------------------------------------------------------EEECCCCSSCEEEEEECTT
T ss_pred e------------------------------------------------------------eEEeecCCCceeEEEECCC
Confidence 1 2233568899999999999
Q ss_pred C-EEEEEECCCcEEEEECCCCee---eeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC--------------
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHC---LRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-------------- 425 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~---~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~-------------- 425 (686)
+ +|++++.|+.|++||+..+.. ...+. |...|++++|+| ++++|++++.||.|++||++
T Consensus 108 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 186 (372)
T 1k8k_C 108 EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 186 (372)
T ss_dssp SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB
T ss_pred CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccc
Confidence 9 999999999999999988763 33332 889999999999 99999999999999999954
Q ss_pred ----CCcEEE-EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCC
Q 005646 426 ----SCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (686)
Q Consensus 426 ----~~~~~~-~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~ 500 (686)
.++.+. +..|...|++++|+|++++|++++.||.|++||+.+++.... ...|...|++++|+| ++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--------~~~~~~~v~~~~~~~-~~~ 257 (372)
T 1k8k_C 187 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT--------LASETLPLLAVTFIT-ESS 257 (372)
T ss_dssp SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE--------EECSSCCEEEEEEEE-TTE
T ss_pred cccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEE--------EccCCCCeEEEEEec-CCC
Confidence 555554 447888999999999999999999999999999987765432 224567899999999 666
Q ss_pred eEEEEeCCCcEEEEeCCc--------------------------------------------------------ceeEc-
Q 005646 501 KVMVSCADSQVRILQGPN--------------------------------------------------------VIGKY- 523 (686)
Q Consensus 501 ~l~~~s~D~~I~iwd~~~--------------------------------------------------------~~~~~- 523 (686)
+++++ .|+.|++|+..+ .++++
T Consensus 258 ~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 336 (372)
T 1k8k_C 258 LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLS 336 (372)
T ss_dssp EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEE
T ss_pred EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEec
Confidence 66666 999999998644 13344
Q ss_pred CCC---CEEEEEeCCCcEEEEeCCCCC
Q 005646 524 KDG---KHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 524 ~dg---~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++| ++|+||+.||.|+||++.+++
T Consensus 337 ~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 337 GGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp STTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred CCCcceeeEEEecCCCceEEEEecChh
Confidence 577 999999999999999998754
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-31 Score=282.25 Aligned_cols=307 Identities=12% Similarity=0.147 Sum_probs=219.7
Q ss_pred ceecccCCceEEEEEeeCC-CEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 244 QEIQAHDGSILTMKFSPDG-QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
..+.+|...|++++|+|++ ++||+|+.||.|+|||+.+++....
T Consensus 67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------------------- 111 (383)
T 3ei3_B 67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF----------------------------------- 111 (383)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----------------------------------
T ss_pred EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----------------------------------
Confidence 3567899999999999999 9999999999999999987652211
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC-CC-EEEEEECCCcEEEEECCCCeeeeEee----CCCC
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP----HSNY 396 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~----h~~~ 396 (686)
..+.+|...|.+++|+| ++ +|++++.|++|++||+... .+..+. |...
T Consensus 112 -------------------------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~ 165 (383)
T 3ei3_B 112 -------------------------IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYW 165 (383)
T ss_dssp -------------------------ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCC
T ss_pred -------------------------eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCC
Confidence 12236999999999999 55 9999999999999999964 444443 4588
Q ss_pred eEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCC-EEEEEecCCcEEEEeCCCCeeeeeee
Q 005646 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAE 475 (686)
Q Consensus 397 V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~-~l~~gs~dg~i~iwd~~~~~~~~~~~ 475 (686)
|++++|+| ++++|++|+.|+.|++||++...+..+..|...|++++|+|+++ +|++++.|+.|++||+.+.+......
T Consensus 166 v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 244 (383)
T 3ei3_B 166 YCCVDVSV-SRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI 244 (383)
T ss_dssp EEEEEEET-TTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEE
T ss_pred eEEEEECC-CCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceE
Confidence 99999999 99999999999999999997666667778999999999999999 89999999999999998733211110
Q ss_pred EEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccc
Q 005646 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAK 555 (686)
Q Consensus 476 ~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~ 555 (686)
. ...|...|++++|+|. ++++|++++.|+.|+|||+.+++........
T Consensus 245 -~----~~~~~~~v~~~~~s~~---------------------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 292 (383)
T 3ei3_B 245 -A----EMPHEKPVNAAYFNPT---------------------------DSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH 292 (383)
T ss_dssp -E----EEECSSCEEEEEECTT---------------------------TSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred -E----EecCCCceEEEEEcCC---------------------------CCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence 0 1135678999999883 6889999999999999999887632221111
Q ss_pred cccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCcCCCccccc
Q 005646 556 TIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLS 635 (686)
Q Consensus 556 ~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~ 635 (686)
....... .......+..+ .....++|+||+.. +++.|+.+.+|+..+......+.
T Consensus 293 ~~~~~~~-~~~~~~~~~p~------------------~~~~~~~~s~dg~~------s~s~d~~i~iwd~~~~~~~~~l~ 347 (383)
T 3ei3_B 293 PHRQFQH-LTPIKATWHPM------------------YDLIVAGRYPDDQL------LLNDKRTIDIYDANSGGLVHQLR 347 (383)
T ss_dssp CBCCCTT-SCCCCCEECSS------------------SSEEEEECBCCTTT------CTTCCCCEEEEETTTCCEEEEEC
T ss_pred ccccccc-ccceEEeccCC------------------CCceEEEecCCccc------ccCCCCeEEEEecCCCceeeeec
Confidence 1111100 00000111111 11223567888422 67899999999977655332221
Q ss_pred cccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEeec
Q 005646 636 SASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNY 680 (686)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~~ 680 (686)
..... .......++++|.+|+||+ ||+|++|+..
T Consensus 348 --~~~~~--------~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 348 --DPNAA--------GIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp --BTTBC--------SCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred --CCCCC--------ceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 00000 0111113566799999997 9999999853
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-31 Score=272.19 Aligned_cols=247 Identities=17% Similarity=0.241 Sum_probs=198.9
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee--CCCEEEEEeCCCcEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRL 276 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~v 276 (686)
.|...+ .+|+++++++++|+.|+.|+||++..... ....++.+|.++|++++|++ +|++||||+.|++|+|
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-----~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-----EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 355555 45778899999999999999999864322 12356889999999999986 4899999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.+++. ..+..+.+|...
T Consensus 82 Wd~~~~~~------------------------------------------------------------~~~~~~~~h~~~ 101 (297)
T 2pm7_B 82 WKEENGRW------------------------------------------------------------SQIAVHAVHSAS 101 (297)
T ss_dssp EEBSSSCB------------------------------------------------------------CCCEEECCCSSC
T ss_pred EEcCCCce------------------------------------------------------------EEEEEeecCCCc
Confidence 99976531 134556789999
Q ss_pred eeEEEeeCC--C-EEEEEECCCcEEEEECCCCee--eeEe-eCCCCeEEEEEeecC-------------CCEEEEEEcCC
Q 005646 357 ILDLSWSKN--N-YLLSASIDKTVRLWRVGNDHC--LRVF-PHSNYVTCVHFNPVD-------------DNYFISGSIDG 417 (686)
Q Consensus 357 V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~~--~~~~-~h~~~V~~v~fsp~~-------------~~~l~sgs~Dg 417 (686)
|.+++|+|+ + +|++++.|++|++||++++.. ...+ .|...|++++|+| + +++|++|+.|+
T Consensus 102 v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~~~~~~~~~~~~~l~sgs~D~ 180 (297)
T 2pm7_B 102 VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP-ATIEEDGEHNGTKESRKFVTGGADN 180 (297)
T ss_dssp EEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC-CC------------CCEEEEEETTS
T ss_pred eeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC-CcccccccCCCCCCcceEEEEcCCC
Confidence 999999997 6 999999999999999987632 2333 3999999999999 4 57999999999
Q ss_pred cEEEEecCCCc----EE-EEeccCCcEEEEEEccCC---CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCe
Q 005646 418 KVRIWAVLSCH----VV-DWVDIRQIVTAVCYRPDG---QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (686)
Q Consensus 418 ~V~iwd~~~~~----~~-~~~~~~~~V~~v~~spdg---~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I 489 (686)
+|+|||++++. .. .+..|...|.+++|+|++ ++|++++.|++|+|||+.......... .. ....|...|
T Consensus 181 ~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~--~~-~~~~~~~~v 257 (297)
T 2pm7_B 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKT--LL-KEEKFPDVL 257 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE--ES-SSSCCSSCE
T ss_pred cEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcccee--ee-ecccCCCcE
Confidence 99999998765 33 456789999999999985 899999999999999997643211111 11 123456789
Q ss_pred EEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 490 TGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 490 ~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
.+++|+| ++.+|++++.|+.|++|+..
T Consensus 258 ~~~~~s~-~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 258 WRASWSL-SGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEECS-SSCCEEEEETTSCEEEEEEC
T ss_pred EEEEECC-CCCEEEEEcCCCcEEEEEEC
Confidence 9999999 88999999999999999865
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-32 Score=287.54 Aligned_cols=297 Identities=9% Similarity=0.042 Sum_probs=211.3
Q ss_pred cceeeecCCCccceeec-------cceEEEEEcCCccccccc-c--ccCceecccCCceEEEEEeeCCCEEEEEe-----
Q 005646 205 EGERVRLNEEDAMFCSK-------VQRVKVYHCKKRSKELSA-L--YKGQEIQAHDGSILTMKFSPDGQYLASAG----- 269 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~-------d~~v~vw~~~~~~~~~~~-~--~~~~~l~~H~~~I~~l~fspdg~~Lasgs----- 269 (686)
...+|++++..+++|+. ++.|++|++......... + .....|.+|...|.+++++ ++.+++|.
T Consensus 18 ~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~ 95 (365)
T 4h5i_A 18 YGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENST 95 (365)
T ss_dssp EEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHH
T ss_pred EEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCcc
Confidence 45778889999999864 346999998754432211 1 1123567899999888765 55677664
Q ss_pred ------CCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCcccccc
Q 005646 270 ------DDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL 343 (686)
Q Consensus 270 ------~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (686)
.|+++|+|++........... .
T Consensus 96 ~l~s~~~d~~~r~~~~~~~~~~~~~~~--------------------------------~-------------------- 123 (365)
T 4h5i_A 96 KITQGKGNKHLRKFKYDKVNDQLEFLT--------------------------------S-------------------- 123 (365)
T ss_dssp HHHHTSCCCCEEEEEEETTTTEEEEEE--------------------------------E--------------------
T ss_pred EEEEecCCCcEEEEEecCCCceEEEee--------------------------------e--------------------
Confidence 467788888765431111000 0
Q ss_pred CCCeEEeccCCCCeeEEEeeCCC-EEEE--EECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEE
Q 005646 344 EKPLHEFHGHSGEILDLSWSKNN-YLLS--ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVR 420 (686)
Q Consensus 344 ~~~~~~l~~h~~~V~~l~~s~~~-~L~s--~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~ 420 (686)
........+...+.+++|+||| +|++ ++.|++|+|||+.+++++..+.|...|++|+|+| ++++|++++.+ .++
T Consensus 124 -~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~-~~~ 200 (365)
T 4h5i_A 124 -VDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGS-SLE 200 (365)
T ss_dssp -ECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSS-CEE
T ss_pred -eceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEeccce-eEE
Confidence 0011123456678999999999 6654 4579999999999999999999999999999999 99999999855 567
Q ss_pred EEecCCCcEEE---EeccCCcEEEEEEccCCCEEEEEecCC----cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 421 IWAVLSCHVVD---WVDIRQIVTAVCYRPDGQGGIVGSMMG----DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 421 iwd~~~~~~~~---~~~~~~~V~~v~~spdg~~l~~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
+|+..+++.+. ...|...|.+++|+|+|+++++++.++ .+++|++........... ....|...|++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~V~~~~ 276 (365)
T 4h5i_A 201 VISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSK----QVTNRFKGITSMD 276 (365)
T ss_dssp EEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEE----EEESSCSCEEEEE
T ss_pred EEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeee----eecCCCCCeEeEE
Confidence 77777766542 235677899999999999999999887 588899876654332221 2344668899999
Q ss_pred EeCCCCCeEEEEeCCCcEEEEeCCc----------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccc
Q 005646 494 FLPQDSSKVMVSCADSQVRILQGPN----------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTI 557 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iwd~~~----------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~ 557 (686)
|+| ++++|++++.|+.|+|||..+ .++|+|||++|||||.|++|+||++...........+.+
T Consensus 277 ~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~~~s~~~~l 355 (365)
T 4h5i_A 277 VDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYANYTSMKQKI 355 (365)
T ss_dssp ECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC--------
T ss_pred ECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcCccCccccc
Confidence 999 899999999999999999653 478999999999999999999999976543333444555
Q ss_pred cccccc
Q 005646 558 RSLERF 563 (686)
Q Consensus 558 ~~~~~~ 563 (686)
..+|++
T Consensus 356 ~kl~~~ 361 (365)
T 4h5i_A 356 SKLEHH 361 (365)
T ss_dssp ------
T ss_pred eeeecc
Confidence 555543
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-31 Score=283.25 Aligned_cols=261 Identities=18% Similarity=0.285 Sum_probs=217.6
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
..++++++.+++++.++.|+||++..... ...+.+|.+.|++++|+|++++|++|+.|+.|++||+.+++
T Consensus 103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--- 172 (420)
T 3vl1_A 103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQ-------REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS--- 172 (420)
T ss_dssp EEECSSSCEEEEEETTSCEEEECTTSCEE-------EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---
T ss_pred EEEecCCCEEEEEECCCCEEEEeCCCcce-------eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc---
Confidence 35678899999999999999998764322 24457899999999999999999999999999999998764
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~ 366 (686)
.+..+.+|...|.+++|+|++
T Consensus 173 -----------------------------------------------------------~~~~~~~h~~~v~~~~~~~~~ 193 (420)
T 3vl1_A 173 -----------------------------------------------------------NPRTLIGHRATVTDIAIIDRG 193 (420)
T ss_dssp -----------------------------------------------------------CCEEEECCSSCEEEEEEETTT
T ss_pred -----------------------------------------------------------CceEEcCCCCcEEEEEEcCCC
Confidence 345667899999999999999
Q ss_pred -EEEEEECCCcEEEEECCCCeeeeEee----CCCCeEEEEE---------------------eecCCCEEEEEEcCCcEE
Q 005646 367 -YLLSASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHF---------------------NPVDDNYFISGSIDGKVR 420 (686)
Q Consensus 367 -~L~s~s~Dg~V~iWd~~~~~~~~~~~----h~~~V~~v~f---------------------sp~~~~~l~sgs~Dg~V~ 420 (686)
+|++++.|++|++||+.+++++..+. |...|.+++| +| ++++|++|+.||.|+
T Consensus 194 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~ 272 (420)
T 3vl1_A 194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVIT 272 (420)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEE
T ss_pred CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEE
Confidence 99999999999999999999998886 4556666655 56 788999999999999
Q ss_pred EEecCCCcEEEEe--ccCCcEEEEEEccCCC-EEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC
Q 005646 421 IWAVLSCHVVDWV--DIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (686)
Q Consensus 421 iwd~~~~~~~~~~--~~~~~V~~v~~spdg~-~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~ 497 (686)
+||+++++.+... .|...|++++|+|+++ +|++|+.||.|++||+.+++.... .+ ...|...|+++.+.
T Consensus 273 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~-~~-----~~~~~~~v~~~~~~-- 344 (420)
T 3vl1_A 273 VHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG-EF-----LINEGTPINNVYFA-- 344 (420)
T ss_dssp EEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE-EE-----EESTTSCEEEEEEE--
T ss_pred EEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh-hh-----hccCCCCceEEEeC--
Confidence 9999998876443 4678899999999999 999999999999999987653211 11 12255678888665
Q ss_pred CCCeEEEEeCCCcEEEEeCCc------------------------ceeEcCCCC---EEEEEeCCCcEEEEeCCC
Q 005646 498 DSSKVMVSCADSQVRILQGPN------------------------VIGKYKDGK---HIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 498 ~~~~l~~~s~D~~I~iwd~~~------------------------~~~~~~dg~---~l~sgs~Dg~V~iWd~~~ 545 (686)
++.+|++++.|+.|++|+..+ .++|+|+++ .|++++.+|.+.+|++++
T Consensus 345 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 345 AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 467999999999999999542 267889999 888888999999999875
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=293.72 Aligned_cols=277 Identities=12% Similarity=0.159 Sum_probs=225.8
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
..+|++++.++++++.++.|+||++....... .....+.+|...|++++|+|+ +++|++++.|+.|++||+.+++.
T Consensus 72 ~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 148 (416)
T 2pm9_A 72 DLDWSHNNKIIAGALDNGSLELYSTNEANNAI---NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTE 148 (416)
T ss_dssp EEEECSSSSCEEEEESSSCEEEECCSSTTSCC---CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSS
T ss_pred EEEECCCCCeEEEEccCCeEEEeecccccccc---cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcc
Confidence 35667788899999999999999987622111 123567789999999999998 89999999999999999987651
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
..... . ...+..+.+|...|.+++|+|
T Consensus 149 ~~~~~----~-------------------------------------------------~~~~~~~~~~~~~v~~~~~~~ 175 (416)
T 2pm9_A 149 SPSNY----T-------------------------------------------------PLTPGQSMSSVDEVISLAWNQ 175 (416)
T ss_dssp CTTTC----C-------------------------------------------------CBCCCCSCCSSCCCCEEEECS
T ss_pred ccccc----c-------------------------------------------------ccccccccCCCCCeeEEEeCC
Confidence 10000 0 001122356899999999999
Q ss_pred C-C-EEEEEECCCcEEEEECCCCeeeeEee-C------CCCeEEEEEeecCCCEEEEEEcCC---cEEEEecCCC-cEE-
Q 005646 365 N-N-YLLSASIDKTVRLWRVGNDHCLRVFP-H------SNYVTCVHFNPVDDNYFISGSIDG---KVRIWAVLSC-HVV- 430 (686)
Q Consensus 365 ~-~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h------~~~V~~v~fsp~~~~~l~sgs~Dg---~V~iwd~~~~-~~~- 430 (686)
+ + +|++++.|+.|++||+.+++++..+. + ...|++++|+|.+..+|++++.|+ .|++||++++ ..+
T Consensus 176 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~ 255 (416)
T 2pm9_A 176 SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ 255 (416)
T ss_dssp SCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB
T ss_pred CCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE
Confidence 9 4 99999999999999999999988887 4 789999999993347999999999 9999999986 444
Q ss_pred EEe-ccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 431 DWV-DIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 431 ~~~-~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
.+. .|...|++++|+| ++++|++++.||.|++||+.+++.... ...|...|++++|+|+++.+|++++.|
T Consensus 256 ~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~~l~s~~~d 327 (416)
T 2pm9_A 256 TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ--------FPARGNWCFKTKFAPEAPDLFACASFD 327 (416)
T ss_dssp CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEE--------EECSSSCCCCEEECTTCTTEEEECCSS
T ss_pred EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcccee--------ecCCCCceEEEEECCCCCCEEEEEecC
Confidence 344 6889999999999 999999999999999999988765432 234667899999999545899999999
Q ss_pred CcEEEEeCCc--------------------------------------------------ceeEcCCCCEEEEEeCCCcE
Q 005646 509 SQVRILQGPN--------------------------------------------------VIGKYKDGKHIVSAGEDSNV 538 (686)
Q Consensus 509 ~~I~iwd~~~--------------------------------------------------~~~~~~dg~~l~sgs~Dg~V 538 (686)
+.|++|+..+ .++|+|+|++|++|+.|+.|
T Consensus 328 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v 407 (416)
T 2pm9_A 328 NKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGV 407 (416)
T ss_dssp SEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCB
T ss_pred CcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeE
Confidence 9999998532 35688999999999999999
Q ss_pred EEEeCCCC
Q 005646 539 YMWNCIGH 546 (686)
Q Consensus 539 ~iWd~~~~ 546 (686)
+||++.+.
T Consensus 408 ~~w~~~~~ 415 (416)
T 2pm9_A 408 SITNPKIS 415 (416)
T ss_dssp CCBCCCCC
T ss_pred EEEEeccC
Confidence 99999874
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-31 Score=279.04 Aligned_cols=237 Identities=15% Similarity=0.246 Sum_probs=196.2
Q ss_pred ecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEee
Q 005646 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (686)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (686)
+..|.++|++++|+|++++|++|+.|+.|++||+.+++.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~----------------------------------------- 42 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW----------------------------------------- 42 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------------------------------------
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----------------------------------------
Confidence 455999999999999999999999999999999987641
Q ss_pred ccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEe---eCCCCeEEEE
Q 005646 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF---PHSNYVTCVH 401 (686)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~---~h~~~V~~v~ 401 (686)
+.+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++....+ .|...|++++
T Consensus 43 -------------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 103 (372)
T 1k8k_C 43 -------------------VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 103 (372)
T ss_dssp -------------------EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEE
T ss_pred -------------------EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEE
Confidence 1345667899999999999999 9999999999999999998865554 3899999999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCcE----EEE-eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee---
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCHV----VDW-VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD--- 473 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~~----~~~-~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~--- 473 (686)
|+| ++++|++++.||.|++||+..+.. ... ..|...|++++|+|++++|++++.||.|++||+........
T Consensus 104 ~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 104 WAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp ECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred ECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence 999 999999999999999999998762 222 45688999999999999999999999999999752110000
Q ss_pred -------eeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------cceeEcCCCCEEEE
Q 005646 474 -------AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP---------------NVIGKYKDGKHIVS 531 (686)
Q Consensus 474 -------~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~---------------~~~~~~~dg~~l~s 531 (686)
...........|...|++++|+| ++..|++++.|+.|++||.. ..++++|++++|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 261 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA 261 (372)
T ss_dssp BTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE
T ss_pred cccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEE
Confidence 00001111235778899999999 78899999999999999964 24678889999988
Q ss_pred EeCCCcEEEEeCCC
Q 005646 532 AGEDSNVYMWNCIG 545 (686)
Q Consensus 532 gs~Dg~V~iWd~~~ 545 (686)
| .|+.|++|++.+
T Consensus 262 ~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 262 G-HDCFPVLFTYDS 274 (372)
T ss_dssp E-TTSSCEEEEEET
T ss_pred E-eCCeEEEEEccC
Confidence 8 999999999987
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-31 Score=277.92 Aligned_cols=242 Identities=13% Similarity=0.235 Sum_probs=198.4
Q ss_pred ecccCCceEEEEEeeC----CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 246 IQAHDGSILTMKFSPD----GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 246 l~~H~~~I~~l~fspd----g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
..+|.++|++++|+|+ ..++++++.++.|+|||+.+++.+..+..
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~------------------------------- 62 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS------------------------------- 62 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEE-------------------------------
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeee-------------------------------
Confidence 4579999999999984 44566666677999999987764333221
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC----C-EEEEEECCCcEEEEECCCCeeeeEee-CCC
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN----N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSN 395 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~----~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~ 395 (686)
+....|...|.+++|+|+ + +|++++.|++|++||+.+++++..+. |..
T Consensus 63 --------------------------~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 116 (366)
T 3k26_A 63 --------------------------YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN 116 (366)
T ss_dssp --------------------------EECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS
T ss_pred --------------------------ccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC
Confidence 111237789999999998 6 89999999999999999999999888 999
Q ss_pred CeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe----ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee
Q 005646 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 396 ~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~----~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
.|++++|+|.++++|++|+.||.|++||+++++.+... .|...|++++|+|++++|++++.||.|++||+.+++..
T Consensus 117 ~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 196 (366)
T 3k26_A 117 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 196 (366)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHH
T ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccc
Confidence 99999999977899999999999999999999887664 68899999999999999999999999999999876533
Q ss_pred eeeeE--------------------EeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-------------
Q 005646 472 LDAEI--------------------CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN------------- 518 (686)
Q Consensus 472 ~~~~~--------------------~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~------------- 518 (686)
..... ........|...|.+++|+ +.++++++.|+.|++||..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 273 (366)
T 3k26_A 197 NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES 273 (366)
T ss_dssp HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCC
T ss_pred cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCc
Confidence 21100 0011123377889999998 46999999999999999543
Q ss_pred ----------------ceeEcCC--CCEEEEEeCCCcEEEEeCCCCC
Q 005646 519 ----------------VIGKYKD--GKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 ----------------~~~~~~d--g~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.++++|+ +++|++|+.||.|++||+.+++
T Consensus 274 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 274 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp CEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred chheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 2567778 9999999999999999998765
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-32 Score=289.48 Aligned_cols=348 Identities=18% Similarity=0.218 Sum_probs=228.7
Q ss_pred eccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcce
Q 005646 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCI 298 (686)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~ 298 (686)
..++.++||++.... ....+.+|.+.|++++|+| ++++||+|+.||.|++||+.++.....+.....
T Consensus 20 ~~~~~~~v~~~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~----- 87 (408)
T 4a11_B 20 RAESTRRVLGLELNK-------DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV----- 87 (408)
T ss_dssp HHHHHHHHHTEEECT-------TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE-----
T ss_pred eccCcceeeccccCc-------ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc-----
Confidence 445567777654322 1345678999999999999 999999999999999999988763322210000
Q ss_pred EEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC-CC-EEEEEECCCc
Q 005646 299 YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKT 376 (686)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~-~L~s~s~Dg~ 376 (686)
. ........+|...|.+++|+| ++ +|++++.|+.
T Consensus 88 -----------------------~---------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 123 (408)
T 4a11_B 88 -----------------------C---------------------SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT 123 (408)
T ss_dssp -----------------------E---------------------EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred -----------------------c---------------------cccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence 0 000111246999999999999 55 9999999999
Q ss_pred EEEEECCCCeeeeEeeCCCCeEEEEEeec--CCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCC-EEE
Q 005646 377 VRLWRVGNDHCLRVFPHSNYVTCVHFNPV--DDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQ-GGI 452 (686)
Q Consensus 377 V~iWd~~~~~~~~~~~h~~~V~~v~fsp~--~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~-~l~ 452 (686)
|++||+.+++++..+.+...+.++.|+|. ++.++++++.||.|++||+++++.+ .+..|...|++++|+|+++ .++
T Consensus 124 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~ 203 (408)
T 4a11_B 124 LKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILA 203 (408)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEE
T ss_pred EEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEE
Confidence 99999999999999999999999999983 2349999999999999999988766 4456889999999999998 488
Q ss_pred EEecCCcEEEEeCCCCeeeeee--------eEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCccee---
Q 005646 453 VGSMMGDCRFYNVSDNHLELDA--------EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG--- 521 (686)
Q Consensus 453 ~gs~dg~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~--- 521 (686)
+|+.||.|++||++........ ..........|...|++++|+| ++..|++++.|+.|++||..+...
T Consensus 204 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~ 282 (408)
T 4a11_B 204 TASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGENTLV 282 (408)
T ss_dssp EEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCBCCC
T ss_pred EEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCcccee
Confidence 9999999999999876422110 0001111246778999999999 778888888888888888664211
Q ss_pred -----------------EcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCC
Q 005646 522 -----------------KYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKE 584 (686)
Q Consensus 522 -----------------~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g 584 (686)
....+..+++++.|+.|++||+.+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~------------------------------------- 325 (408)
T 4a11_B 283 NYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE------------------------------------- 325 (408)
T ss_dssp CCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC-------------------------------------
T ss_pred ccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc-------------------------------------
Confidence 11245566677778888888887754
Q ss_pred CcccccCCCC--CcccccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccCccCCCCc
Q 005646 585 PQLHVSDDDS--PENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWG 662 (686)
Q Consensus 585 ~~l~~~~~~~--~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 662 (686)
.+..+.+|. ...++|+|+ +..+++++.|+.+.+|+.+........ .... ......+...
T Consensus 326 -~~~~~~~~~~~v~~~~~s~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~------~~~~--------~~~~~~~~~~ 386 (408)
T 4a11_B 326 -QITMLKGHYKTVDCCVFQSN----FQELYSGSRDCNILAWVPSLYEPVPDD------DETT--------TKSQLNPAFE 386 (408)
T ss_dssp -EEEEECCCSSCEEEEEEETT----TTEEEEEETTSCEEEEEECC-----------------------------------
T ss_pred -ceeeeccCCCeEEEEEEcCC----CCEEEEECCCCeEEEEeCCCCCccCCC------CceE--------eccccccccc
Confidence 112222222 234567887 456778889999999997665432211 0000 0001122345
Q ss_pred eEEEEecCCCeEeEEeec
Q 005646 663 LVIVTAGWDGRIRSFLNY 680 (686)
Q Consensus 663 ~~ivT~~~DG~Ir~w~~~ 680 (686)
....+++.||.|++|.+.
T Consensus 387 ~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 387 DAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ------------------
T ss_pred eeecccCccCceeecCCc
Confidence 577789999999999874
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-31 Score=279.59 Aligned_cols=239 Identities=19% Similarity=0.280 Sum_probs=204.4
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.....
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~--------------------------------------- 45 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH--------------------------------------- 45 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---------------------------------------
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc---------------------------------------
Confidence 56789999999999999999999999999999999974331
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC--C-EEEEEECCCcEEEEECCCCe--eeeEee-CCCCe
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYV 397 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~--~~~~~~-h~~~V 397 (686)
+.+..+.+|...|.+++|+++ + +|++++.|++|++||+.+++ .+..+. |...|
T Consensus 46 ---------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v 104 (379)
T 3jrp_A 46 ---------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV 104 (379)
T ss_dssp ---------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred ---------------------eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcce
Confidence 234567789999999999876 6 99999999999999999997 555565 99999
Q ss_pred EEEEEeecC--CCEEEEEEcCCcEEEEecCCCc---EEEEeccCCcEEEEEEcc-------------CCCEEEEEecCCc
Q 005646 398 TCVHFNPVD--DNYFISGSIDGKVRIWAVLSCH---VVDWVDIRQIVTAVCYRP-------------DGQGGIVGSMMGD 459 (686)
Q Consensus 398 ~~v~fsp~~--~~~l~sgs~Dg~V~iwd~~~~~---~~~~~~~~~~V~~v~~sp-------------dg~~l~~gs~dg~ 459 (686)
++++|+| + +.+|++++.||.|++||+++.. ......|...|++++|+| ++.+|++++.||.
T Consensus 105 ~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 183 (379)
T 3jrp_A 105 NSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 183 (379)
T ss_dssp EEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSC
T ss_pred EEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCe
Confidence 9999999 7 8999999999999999998873 345667889999999999 6999999999999
Q ss_pred EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC--CCeEEEEeCCCcEEEEeCCc-------------------
Q 005646 460 CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD--SSKVMVSCADSQVRILQGPN------------------- 518 (686)
Q Consensus 460 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~--~~~l~~~s~D~~I~iwd~~~------------------- 518 (686)
|++||+.++...... ......|...|++++|+|+. +.+|++++.|+.|++||..+
T Consensus 184 i~i~d~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 259 (379)
T 3jrp_A 184 VKIWKYNSDAQTYVL----ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 259 (379)
T ss_dssp EEEEEEETTTTEEEE----EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCE
T ss_pred EEEEEecCCCcceee----EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcE
Confidence 999999866533221 11234577889999999943 89999999999999998643
Q ss_pred -ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 519 -VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 -~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.++|+|++++|++++.||.|+||++....
T Consensus 260 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 260 WRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 25788999999999999999999998643
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-30 Score=270.08 Aligned_cols=290 Identities=17% Similarity=0.258 Sum_probs=228.9
Q ss_pred ecccCcce--eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 005646 200 VDKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (686)
Q Consensus 200 ~~~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW 277 (686)
..|...+. +|+++++++++++.++.|+||++..... ...+.+|...|++++|+|++++|++++.||.|++|
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-------LGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE-------EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh-------hhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 35666664 4567788999999999999999765432 35678899999999999999999999999999999
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec--cCCceEEEeCCccc-------cccCCCeE
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR--TSESACVVFPPKVF-------RILEKPLH 348 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~ 348 (686)
|+.+++.+..+. ....+.++.+.++. ...+..... .....+.+|+.... .....++.
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~~~-------------~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~ 167 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSPCG-------------NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIH 167 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECTTS-------------SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEccCC-------------CEEEEecCCccCCCCEEEEEEecCCccceeecccccceee
Confidence 999998877776 33334444443322 222111111 01122222222111 11224566
Q ss_pred EeccCCC--CeeEEEeeCCC-EEEEEECCCcEEEEECCC-CeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 349 EFHGHSG--EILDLSWSKNN-YLLSASIDKTVRLWRVGN-DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 349 ~l~~h~~--~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~-~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
.+..|.. .+.+++|+|++ +|++++.|+.|++||+.+ .+.+..+. |...|++++|+| ++++|++++.||.|++||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 168 KIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp EEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred eccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEE
Confidence 7777877 99999999999 999999999999999998 78888887 999999999999 999999999999999999
Q ss_pred cCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCC--------------cEEEEeCCCCeeeeeeeEEeeccccCCCCCe
Q 005646 424 VLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG--------------DCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (686)
Q Consensus 424 ~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I 489 (686)
+++++.+....+...+..++|+|+++++++++.++ .+++||+.+++.... ...|...|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--------~~~~~~~v 318 (369)
T 3zwl_B 247 VSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR--------VQGHFGPL 318 (369)
T ss_dssp TTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEE--------EECCSSCE
T ss_pred CCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh--------eecccCcE
Confidence 99999998888999999999999999999999988 899999988765432 23466889
Q ss_pred EEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 490 TGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 490 ~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++++|+| ++++|++++.||.|+||++..+.
T Consensus 319 ~~~~~s~----------------------------~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 319 NTVAISP----------------------------QGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEEECT----------------------------TSSEEEEEETTSEEEEEEECHHH
T ss_pred EEEEECC----------------------------CCCEEEEEcCCCeEEEEECcccc
Confidence 9999999 89999999999999999998754
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-30 Score=266.50 Aligned_cols=266 Identities=17% Similarity=0.296 Sum_probs=218.1
Q ss_pred ecccCcceeee-cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 200 VDKQGEGERVR-LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 200 ~~~~~~~~~~s-~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
..|...+.++. ++++.+++++.|+.|+||+...... ...+..|...|.+++|+|++++|++++.||.|++|+
T Consensus 15 ~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 15 KGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWL-------GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp CCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEE-------EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred hCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEE-------EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 35666665444 6778999999999999999854322 345678999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+..... .+++..+.+|...|.
T Consensus 88 ~~~~~~-----------------------------------------------------------~~~~~~~~~~~~~i~ 108 (313)
T 3odt_A 88 LFATSG-----------------------------------------------------------EDPLYTLIGHQGNVC 108 (313)
T ss_dssp TTCCTT-----------------------------------------------------------SCC-CEECCCSSCEE
T ss_pred eeecCC-----------------------------------------------------------CCcccchhhcccCEE
Confidence 865421 124566778999999
Q ss_pred EEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec-cC
Q 005646 359 DLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-IR 436 (686)
Q Consensus 359 ~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~~ 436 (686)
+++|. .++|++++.|+.|++|| .++.+..+. |...|.+++|+|.++++|++++.||.|++||.... ...+.. +.
T Consensus 109 ~~~~~-~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~ 184 (313)
T 3odt_A 109 SLSFQ-DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV-IKTFSGIHN 184 (313)
T ss_dssp EEEEE-TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE-EEEECSSCS
T ss_pred EEEec-CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce-EEEEeccCc
Confidence 99993 33999999999999999 667777776 99999999999988999999999999999994332 223333 88
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
..+++++|+|++. +++++.||.|++||+.+++.... ...|...|++++|+| ++ .+++++.|+.|++||.
T Consensus 185 ~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 185 DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT--------YEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSK 253 (313)
T ss_dssp SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE--------EECCSSCEEEEEECT-TS-CEEEEETTSEEEEECT
T ss_pred ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh--------hhcCCceEEEEEEec-CC-CEEEEecCCEEEEEEC
Confidence 8999999999998 99999999999999988765432 234668899999999 44 6999999999999996
Q ss_pred Cc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 517 PN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 517 ~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.+ .++++|+++ +++++.||.|++|++.+++
T Consensus 254 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 254 ENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp TTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred CCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 53 367888998 6679999999999998865
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-30 Score=279.04 Aligned_cols=280 Identities=18% Similarity=0.317 Sum_probs=225.5
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceec-ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQ-AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
+..+.++++.+++++.++.|+||+....... ..+. .|...|++++|+|++++|++|+.||.|++||+.+++.
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~-------~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 168 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVS-------ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK 168 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEE-------EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcEe-------EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE
Confidence 4567788889999999999999998764321 1222 3899999999999999999999999999999999988
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
+..+..+...+.++.+.. . .. ...+.+..+.+|+... ....+..+.+|.+.|.+++|+|
T Consensus 169 ~~~~~~~~~~v~~~~~~~----~-~l-------------~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~v~~~~~~~ 227 (401)
T 4aez_A 169 LRTMAGHQARVGCLSWNR----H-VL-------------SSGSRSGAIHHHDVRI---ANHQIGTLQGHSSEVCGLAWRS 227 (401)
T ss_dssp EEEECCCSSCEEEEEEET----T-EE-------------EEEETTSEEEEEETTS---SSCEEEEEECCSSCEEEEEECT
T ss_pred EEEecCCCCceEEEEECC----C-EE-------------EEEcCCCCEEEEeccc---CcceeeEEcCCCCCeeEEEEcC
Confidence 888776665555554411 0 11 1122334444444332 1245778889999999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEE--cCCcEEEEecCCCcEEEEeccCCcEE
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS--IDGKVRIWAVLSCHVVDWVDIRQIVT 440 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs--~Dg~V~iwd~~~~~~~~~~~~~~~V~ 440 (686)
++ +|++++.|++|++||+.+++++..+. |...|++++|+|....++++|+ .|+.|++||+.+++.+....+...|+
T Consensus 228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~ 307 (401)
T 4aez_A 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVT 307 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEE
T ss_pred CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 99 99999999999999999999988886 9999999999995557777766 79999999999999998888899999
Q ss_pred EEEEccCCCEEEE--EecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 441 AVCYRPDGQGGIV--GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 441 ~v~~spdg~~l~~--gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
+++|+|+++++++ |+.||.|++||+.++....... ...|...|.+++|+|
T Consensus 308 ~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~------~~~h~~~v~~~~~s~---------------------- 359 (401)
T 4aez_A 308 SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD------IPAHDTRVLYSALSP---------------------- 359 (401)
T ss_dssp EEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE------EECCSSCCCEEEECT----------------------
T ss_pred EEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE------ecCCCCCEEEEEECC----------------------
Confidence 9999999999999 4489999999998876543322 234668899999999
Q ss_pred ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 519 VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 ~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++++|++++.||.|++|++.+++
T Consensus 360 ------dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 360 ------DGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp ------TSSEEEEECTTSEEEEEECCC--
T ss_pred ------CCCEEEEEeCCCcEEEEECCCCc
Confidence 89999999999999999999876
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-30 Score=293.77 Aligned_cols=388 Identities=12% Similarity=0.144 Sum_probs=275.3
Q ss_pred eeeec--CCCccceeeccceEEEEEcCCccc-cccccccCceecccCCceEEEEEeeCCCEEEEEeCC----CcEEEEEe
Q 005646 207 ERVRL--NEEDAMFCSKVQRVKVYHCKKRSK-ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD----GVVRLWQV 279 (686)
Q Consensus 207 ~~~s~--~~~~l~~g~~d~~v~vw~~~~~~~-~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----g~I~vWd~ 279 (686)
.+|++ +++++++++.|+.|+||++..... ..........+.+|...|.+++|+|++++|++++.| +.|++||
T Consensus 70 ~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d- 148 (615)
T 1pgu_A 70 VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD- 148 (615)
T ss_dssp EEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-
T ss_pred EEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-
Confidence 55677 888999999999999999853200 000112235677899999999999999999999988 6888888
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCC---C
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG---E 356 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~ 356 (686)
.++.+..+..+...+.++.|.++... .+. ..+.+..+.+|+... .+.+..+.+|.. .
T Consensus 149 -~~~~~~~~~~~~~~v~~~~~~~~~~~-------------~l~--~~~~d~~v~vwd~~~----~~~~~~~~~~~~~~~~ 208 (615)
T 1pgu_A 149 -SGNSLGEVSGHSQRINACHLKQSRPM-------------RSM--TVGDDGSVVFYQGPP----FKFSASDRTHHKQGSF 208 (615)
T ss_dssp -TCCEEEECCSCSSCEEEEEECSSSSC-------------EEE--EEETTTEEEEEETTT----BEEEEEECSSSCTTCC
T ss_pred -CCCcceeeecCCccEEEEEECCCCCc-------------EEE--EEeCCCcEEEEeCCC----cceeeeecccCCCCce
Confidence 56666666665555555555443321 111 122334444454332 245677889999 9
Q ss_pred eeEEEeeCC-C-EEEEEECCCcEEEEECCCCeeeeEe-----eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE
Q 005646 357 ILDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCLRVF-----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 357 V~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~~~~~~~-----~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
|.+++|+|+ + +|++++.|+.|++||+.+++++..+ .|...|++++|+ ++++|++++.||.|++||+++++.
T Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKC 286 (615)
T ss_dssp EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcE
Confidence 999999999 8 9999999999999999999999998 799999999999 889999999999999999999887
Q ss_pred EEEeccC-----CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeee-----------------------------
Q 005646 430 VDWVDIR-----QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE----------------------------- 475 (686)
Q Consensus 430 ~~~~~~~-----~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~----------------------------- 475 (686)
+...... ..+.++.|. +++++++++.+|.|++||+.+++......
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 287 VQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSS 365 (615)
T ss_dssp EEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTT
T ss_pred EEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEch
Confidence 7555433 567777775 78888888888888888877543321110
Q ss_pred -----------------------------EEeecc-----------------------------------------ccCC
Q 005646 476 -----------------------------ICVHSK-----------------------------------------KKAP 485 (686)
Q Consensus 476 -----------------------------~~~~~~-----------------------------------------~~~~ 485 (686)
+.+... ...+
T Consensus 366 ~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (615)
T 1pgu_A 366 SMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL 445 (615)
T ss_dssp EEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred hhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeeccc
Confidence 000000 0013
Q ss_pred CCCeEEEEEeCCCCCeEEEEeC-CCcEEEEeCCc----------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 005646 486 CKRITGFQFLPQDSSKVMVSCA-DSQVRILQGPN----------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHEE 548 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~s~-D~~I~iwd~~~----------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~ 548 (686)
...+++++|+ +..+++++. |+.|++||..+ .++++|++++|++|+.||.|++||+.+++.
T Consensus 446 ~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 522 (615)
T 1pgu_A 446 NSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV 522 (615)
T ss_dssp SSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc
Confidence 3456666666 578999999 99999999753 367889999999999999999999988763
Q ss_pred CCcc---cccccccccccc----------C-CcEEEecCCCC-cCCCCCCC-CcccccCCCCCc--ccccCCCccccCcc
Q 005646 549 PAHD---QAKTIRSLERFT----------T-NASIAIPWCGL-KCGNAEKE-PQLHVSDDDSPE--NLAFAPARFSLGQE 610 (686)
Q Consensus 549 ~~~~---~~~~~~~~~~~~----------~-~~~v~~s~~g~-~~~~~~~g-~~l~~~~~~~~~--~~~~spd~~~~~~~ 610 (686)
.... +...+..+.-.. . ...+..+.+|. .+|+..++ ..+..+.+|... .++|+|| +.
T Consensus 523 ~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~- 597 (615)
T 1pgu_A 523 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP----ST- 597 (615)
T ss_dssp EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET----TE-
T ss_pred eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCC----CC-
Confidence 2211 111222221111 1 12222223332 68999988 677777776544 5678999 45
Q ss_pred ccccCCCCCCCCCCCC
Q 005646 611 YVFESFPKGCATWPEE 626 (686)
Q Consensus 611 ~~~~s~d~~~~~W~~~ 626 (686)
+++.+.|+.+.+|+.+
T Consensus 598 l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 598 LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEEEETTSCEEEEEEC
T ss_pred eEEecCCceEEEEeee
Confidence 7788999999999854
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-29 Score=274.97 Aligned_cols=316 Identities=14% Similarity=0.251 Sum_probs=247.9
Q ss_pred HHHhHHhhcc-cceeeecccCc-ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCC
Q 005646 185 VKKRWFSRLR-SLACVVDKQGE-GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG 262 (686)
Q Consensus 185 ~~~~~~~~~~-~~~~~~~~~~~-~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg 262 (686)
....|...-. .......|... +.+++++++.+++|+.|+.|+||+...... ...+.+|.+.|++++|+ +
T Consensus 99 ~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~-------~~~~~~h~~~v~~~~~~--~ 169 (445)
T 2ovr_B 99 IDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKC-------LRTLVGHTGGVWSSQMR--D 169 (445)
T ss_dssp HHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCE-------EEECCCCSSCEEEEEEE--T
T ss_pred hhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcE-------EEEEcCCCCCEEEEEec--C
Confidence 3445554332 23333445554 467899999999999999999999865432 34577899999999998 6
Q ss_pred CEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccc
Q 005646 263 QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRI 342 (686)
Q Consensus 263 ~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (686)
++|++|+.||+|++||+.+++.+..+..+...+.++.+... .. +..+.+..+.+|+...
T Consensus 170 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-----~l-------------~s~s~dg~i~~wd~~~--- 228 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-----RV-------------VSGSRDATLRVWDIET--- 228 (445)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-----EE-------------EEEETTSEEEEEESSS---
T ss_pred CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCC-----EE-------------EEEeCCCEEEEEECCC---
Confidence 69999999999999999999988888766665555544210 01 1122334444444332
Q ss_pred cCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEE
Q 005646 343 LEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVR 420 (686)
Q Consensus 343 ~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~ 420 (686)
.+.+..+.+|...|.+++| ++ +|++++.|+.|++||+.+++++..+. |...|++++| ++.++++|+.||.|+
T Consensus 229 -~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~ 302 (445)
T 2ovr_B 229 -GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIR 302 (445)
T ss_dssp -CCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEE
T ss_pred -CcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEE
Confidence 3467788899999999999 45 99999999999999999999999988 9999999999 678999999999999
Q ss_pred EEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 421 IWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 421 iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
+||+++++.+ .+..|...+.++.+ +++++++|+.||.|++||+.+++.... ......|...|++++|++
T Consensus 303 i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~v~~~~~~~--- 372 (445)
T 2ovr_B 303 VWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQT-----LQGPNKHQSAVTCLQFNK--- 372 (445)
T ss_dssp EEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE-----ECSTTSCSSCEEEEEECS---
T ss_pred EEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEE-----EccCCCCCCCEEEEEECC---
Confidence 9999999877 44567778887776 567999999999999999988765431 112234778899999965
Q ss_pred CeEEEEeCCCcEEEEeCCc--------------------ceeEcCCCCEEEEEeCCCc----EEEEeCCCC
Q 005646 500 SKVMVSCADSQVRILQGPN--------------------VIGKYKDGKHIVSAGEDSN----VYMWNCIGH 546 (686)
Q Consensus 500 ~~l~~~s~D~~I~iwd~~~--------------------~~~~~~dg~~l~sgs~Dg~----V~iWd~~~~ 546 (686)
.++++++.|+.|++||..+ .++++|++.+|++|+.||+ |+|||+...
T Consensus 373 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 373 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 7999999999999999653 2568889999999999998 999999864
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-31 Score=278.20 Aligned_cols=261 Identities=17% Similarity=0.251 Sum_probs=197.4
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee--CCCEEEEEeCCCcEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRL 276 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~v 276 (686)
.|...+ .+|+++++++++|+.|+.|+||++...... ....+.+|.+.|++++|+| ++++|+||+.|++|+|
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-----~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-----LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-----EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-----EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 345555 456788899999999999999998653221 1356789999999999986 4899999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.++.. ..+..+.+|...
T Consensus 86 Wd~~~~~~------------------------------------------------------------~~~~~~~~h~~~ 105 (316)
T 3bg1_A 86 WREENGTW------------------------------------------------------------EKSHEHAGHDSS 105 (316)
T ss_dssp ECCSSSCC------------------------------------------------------------CEEEEECCCSSC
T ss_pred EECCCCcc------------------------------------------------------------eEEEEccCCCCc
Confidence 99876531 134456789999
Q ss_pred eeEEEeeCC--C-EEEEEECCCcEEEEECCCCee---eeEee-CCCCeEEEEEeecC-----------------CCEEEE
Q 005646 357 ILDLSWSKN--N-YLLSASIDKTVRLWRVGNDHC---LRVFP-HSNYVTCVHFNPVD-----------------DNYFIS 412 (686)
Q Consensus 357 V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~~---~~~~~-h~~~V~~v~fsp~~-----------------~~~l~s 412 (686)
|.+++|+|+ + +|++++.|++|++||+..+.. ...+. |...|.+++|+| + +.+|++
T Consensus 106 V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s 184 (316)
T 3bg1_A 106 VNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFAS 184 (316)
T ss_dssp CCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC-CCCC------CCSCCCCCCCBEEC
T ss_pred eEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc-ccCCccccccccccCccccceEEE
Confidence 999999997 6 899999999999999987632 23333 889999999999 5 468999
Q ss_pred EEcCCcEEEEecCCC---cE-EEEeccCCcEEEEEEccCC----CEEEEEecCCcEEEEeCCCCeee-eeeeEEeecccc
Q 005646 413 GSIDGKVRIWAVLSC---HV-VDWVDIRQIVTAVCYRPDG----QGGIVGSMMGDCRFYNVSDNHLE-LDAEICVHSKKK 483 (686)
Q Consensus 413 gs~Dg~V~iwd~~~~---~~-~~~~~~~~~V~~v~~spdg----~~l~~gs~dg~i~iwd~~~~~~~-~~~~~~~~~~~~ 483 (686)
|+.|++|++||++.. +. ..+..|...|.+++|+|++ ++|++|+.||+|++|++.+.... .... . ..
T Consensus 185 gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~-~----~~ 259 (316)
T 3bg1_A 185 GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPK-L----LH 259 (316)
T ss_dssp CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCC-E----EE
T ss_pred ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhh-h----hh
Confidence 999999999999754 22 2456788999999999987 88999999999999998763110 0000 0 12
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-----ceeEcCCCCEEEEEe
Q 005646 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-----VIGKYKDGKHIVSAG 533 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-----~~~~~~dg~~l~sgs 533 (686)
.|...|.+++|+| ++.+|++++.|+.|++|+... .+....+++..++++
T Consensus 260 ~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~~~g~~~~~~~~~~~~~~~~~~ 313 (316)
T 3bg1_A 260 KFNDVVWHVSWSI-TANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSAS 313 (316)
T ss_dssp ECSSCEEEEEECT-TTCCEEEEESSSCEEEEEECTTSCEEEEEECC---------
T ss_pred cCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEECCCCcEEEeeeccCCCCceeee
Confidence 3457899999999 789999999999999999652 334445555555543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-30 Score=283.37 Aligned_cols=306 Identities=18% Similarity=0.265 Sum_probs=230.0
Q ss_pred ceecccCCce-EEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 244 QEIQAHDGSI-LTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 244 ~~l~~H~~~I-~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
..+.+|...| .++.| ++++|++|+.||+|++||+.+++
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~--------------------------------------- 153 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK--------------------------------------- 153 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE---------------------------------------
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc---------------------------------------
Confidence 4678898885 55555 57899999999999999998775
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~ 401 (686)
.+..+.+|.+.|.+++|+++++|++|+.|++|++||+.+++++..+. |...|++++
T Consensus 154 -----------------------~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~ 210 (464)
T 3v7d_B 154 -----------------------FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 210 (464)
T ss_dssp -----------------------EEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred -----------------------EEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEE
Confidence 34556789999999999999999999999999999999999999998 999999999
Q ss_pred Eee-cCCCEEEEEEcCCcEEEEecCCCcE------------------------EEEeccCCcEEEEEEccCCCEEEEEec
Q 005646 402 FNP-VDDNYFISGSIDGKVRIWAVLSCHV------------------------VDWVDIRQIVTAVCYRPDGQGGIVGSM 456 (686)
Q Consensus 402 fsp-~~~~~l~sgs~Dg~V~iwd~~~~~~------------------------~~~~~~~~~V~~v~~spdg~~l~~gs~ 456 (686)
|+| .++++|++|+.||+|++||+++... .....|...|.++ +++++++++|+.
T Consensus 211 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~ 288 (464)
T 3v7d_B 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSY 288 (464)
T ss_dssp EEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEET
T ss_pred EecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeC
Confidence 996 2678999999999999999987652 2445667777666 688999999999
Q ss_pred CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcce-------------eEc
Q 005646 457 MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI-------------GKY 523 (686)
Q Consensus 457 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~-------------~~~ 523 (686)
||.|++||+.+++.... ...|...|++++|+| ++..+++++.|+.|++||..+.. ++.
T Consensus 289 d~~i~vwd~~~~~~~~~--------~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 359 (464)
T 3v7d_B 289 DNTLIVWDVAQMKCLYI--------LSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR 359 (464)
T ss_dssp TSCEEEEETTTTEEEEE--------ECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CCeEEEEECCCCcEEEE--------ecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEE
Confidence 99999999998775432 245678899999999 88999999999999999976431 122
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCC
Q 005646 524 KDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPA 603 (686)
Q Consensus 524 ~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd 603 (686)
.++++|++|+.||.|++||+.++.. ..... ..+....++|+|+
T Consensus 360 ~~~~~l~s~s~dg~v~vwd~~~~~~--------~~~~~-----------------------------~~~~~~~~~~~~~ 402 (464)
T 3v7d_B 360 LSDKFLVSAAADGSIRGWDANDYSR--------KFSYH-----------------------------HTNLSAITTFYVS 402 (464)
T ss_dssp ECSSEEEEEETTSEEEEEETTTCCE--------EEEEE-----------------------------CTTCCCEEEEEEC
T ss_pred EcCCEEEEEeCCCcEEEEECCCCce--------eeeec-----------------------------CCCCccEEEEEeC
Confidence 2689999999999999999987541 11110 0112233456666
Q ss_pred ccccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEe
Q 005646 604 RFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 678 (686)
Q Consensus 604 ~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~ 678 (686)
+..+++++ ++.+.+|+.++.......... + ......+.+ + ...++++++.||.+.+|-
T Consensus 403 ----~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~------~----~~~v~~v~~-~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 403 ----DNILVSGS-ENQFNIYNLRSGKLVHANILK------D----ADQIWSVNF-K-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp ----SSEEEEEE-TTEEEEEETTTCCEEESCTTT------T----CSEEEEEEE-E-TTEEEEEEEETTEEEEEE
T ss_pred ----CCEEEEec-CCeEEEEECCCCcEEehhhcc------C----CCcEEEEEe-c-CCEEEEEEEeCCeEEEEE
Confidence 33444444 888999997765533221001 0 011222222 2 366777778888777663
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-30 Score=268.33 Aligned_cols=239 Identities=19% Similarity=0.306 Sum_probs=201.2
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+.+.+|.+.|++|+|+|++++||+|+.||.|+|||+.++....
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------------------------------- 47 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW------------------------------------- 47 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE-------------------------------------
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc-------------------------------------
Confidence 4577899999999999999999999999999999998654110
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC--CC-EEEEEECCCcEEEEECCCC---------eeeeEe
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK--NN-YLLSASIDKTVRLWRVGND---------HCLRVF 391 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--~~-~L~s~s~Dg~V~iWd~~~~---------~~~~~~ 391 (686)
+.+..+.+|...|.+++|+| ++ +|++++.|++|++||+.++ +++..+
T Consensus 48 ---------------------~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 106 (351)
T 3f3f_A 48 ---------------------ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL 106 (351)
T ss_dssp ---------------------EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE
T ss_pred ---------------------eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee
Confidence 13456678999999999999 46 9999999999999999887 556666
Q ss_pred e-CCCCeEEEEEeecC--CCEEEEEEcCCcEEEEecCCCcEEEE--------------eccCCcEEEEEEccC---CCEE
Q 005646 392 P-HSNYVTCVHFNPVD--DNYFISGSIDGKVRIWAVLSCHVVDW--------------VDIRQIVTAVCYRPD---GQGG 451 (686)
Q Consensus 392 ~-h~~~V~~v~fsp~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~--------------~~~~~~V~~v~~spd---g~~l 451 (686)
. |...|++++|+| + +++|++++.||.|++||+++++.+.. ..+...+.+++|+|+ +.++
T Consensus 107 ~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 185 (351)
T 3f3f_A 107 NDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL 185 (351)
T ss_dssp CCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEE
T ss_pred cccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEE
Confidence 5 999999999999 7 99999999999999999988764311 146678999999997 9999
Q ss_pred EEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC---CeEEEEeCCCcEEEEeCCc----------
Q 005646 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS---SKVMVSCADSQVRILQGPN---------- 518 (686)
Q Consensus 452 ~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~---~~l~~~s~D~~I~iwd~~~---------- 518 (686)
++++.++.+.+|+...++.... .....|...|++++|+|+.+ .+|++++.|+.|++||..+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 259 (351)
T 3f3f_A 186 AVSALEQAIIYQRGKDGKLHVA------AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEES 259 (351)
T ss_dssp EEEETTEEEEEEECTTSCEEEE------EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------
T ss_pred EEecCCCcEEEEccCCCceeee------eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCc
Confidence 9999999998888877654321 12445778999999999432 7999999999999998543
Q ss_pred ---------------------------------------------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 519 ---------------------------------------------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 ---------------------------------------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.++|+|++++|++|+.||.|+||++.+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 260 LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp -------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 26788899999999999999999999875
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=272.36 Aligned_cols=271 Identities=20% Similarity=0.355 Sum_probs=212.5
Q ss_pred ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCC
Q 005646 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~ 294 (686)
.+++.+.|++|+||+....... ....+.+|...|++|+|+|+|++||+|+.||+|+|||+.+++.+..+..+...
T Consensus 117 n~lAvgld~tV~lWd~~tg~~~-----~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~ 191 (420)
T 4gga_A 117 NVLAVALDNSVYLWSASSGDIL-----QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR 191 (420)
T ss_dssp SEEEEEETTEEEEEETTTCCEE-----EEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CEEEEEeCCEEEEEECCCCCEE-----EEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc
Confidence 3444556999999998764321 11235578899999999999999999999999999999999988888766554
Q ss_pred CcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC
Q 005646 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI 373 (686)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~ 373 (686)
..++.+.. . . ....+.+..+.+++... ....+..+.+|...+..+.|+|++ +|++++.
T Consensus 192 v~~~s~~~-------------~--~---l~sgs~d~~i~~~d~~~---~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~ 250 (420)
T 4gga_A 192 VGSLSWNS-------------Y--I---LSSGSRSGHIHHHDVRV---AEHHVATLSGHSQEVCGLRWAPDGRHLASGGN 250 (420)
T ss_dssp EEEEEEET-------------T--E---EEEEETTSEEEEEETTS---SSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred eEEEeeCC-------------C--E---EEEEeCCCceeEeeecc---cceeeEEecccccceeeeeecCCCCeeeeeec
Confidence 44333211 0 0 01122233333333221 124567788999999999999999 9999999
Q ss_pred CCcEEEEECCCCee----eeEee-CCCCeEEEEEeecCCCEEEEE--EcCCcEEEEecCCCcEEEEeccCCcEEEEEEcc
Q 005646 374 DKTVRLWRVGNDHC----LRVFP-HSNYVTCVHFNPVDDNYFISG--SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP 446 (686)
Q Consensus 374 Dg~V~iWd~~~~~~----~~~~~-h~~~V~~v~fsp~~~~~l~sg--s~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp 446 (686)
|+.|++|+..+++. +.... |...|.+++|+|.+..+++++ +.|++|++||+.+++++........+.++.|+|
T Consensus 251 D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~ 330 (420)
T 4gga_A 251 DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP 330 (420)
T ss_dssp TSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEET
T ss_pred cccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecC
Confidence 99999999987753 33333 899999999999777777765 479999999999999998888889999999999
Q ss_pred CCCEEEEEe--cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcC
Q 005646 447 DGQGGIVGS--MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK 524 (686)
Q Consensus 447 dg~~l~~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~ 524 (686)
+++.+++++ .||.|+|||+.++++... ..+|...|++++|+|
T Consensus 331 ~~~~lv~~sg~~d~~I~iwd~~~~~~v~~--------l~gH~~~V~~l~~sp---------------------------- 374 (420)
T 4gga_A 331 HYKELISGHGFAQNQLVIWKYPTMAKVAE--------LKGHTSRVLSLTMSP---------------------------- 374 (420)
T ss_dssp TTTEEEEEECTTTCCEEEEETTTCCEEEE--------ECCCSSCEEEEEECT----------------------------
T ss_pred CCCeEEEEEecCCCEEEEEECCCCcEEEE--------EcCCCCCEEEEEEcC----------------------------
Confidence 999998865 689999999998775432 346788999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCC
Q 005646 525 DGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 525 dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
||++|+||+.|++|+|||+....
T Consensus 375 dg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 375 DGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp TSSCEEEEETTTEEEEECCSCSS
T ss_pred CCCEEEEEecCCeEEEEECCCCC
Confidence 89999999999999999998754
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=277.02 Aligned_cols=312 Identities=18% Similarity=0.318 Sum_probs=234.1
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+.+.+|.+.|.. +++++|++|++|+.||+|++||+.+++
T Consensus 112 ~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~---------------------------------------- 150 (445)
T 2ovr_B 112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK---------------------------------------- 150 (445)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC----------------------------------------
T ss_pred EEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCc----------------------------------------
Confidence 457889987643 355679999999999999999998765
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~f 402 (686)
.+..+.+|.+.|.+++|+ +++|++++.|++|++||+.+++++..+. |...|.+++|
T Consensus 151 ----------------------~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 207 (445)
T 2ovr_B 151 ----------------------CLRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207 (445)
T ss_dssp ----------------------EEEECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ----------------------EEEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEe
Confidence 345566899999999998 3499999999999999999999999887 9999999999
Q ss_pred eecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 403 NPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 403 sp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
+ +++|++|+.||+|++||+.+++.+ .+..|...|++++| +++++++|+.||.|++||+.+++....
T Consensus 208 ~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~-------- 274 (445)
T 2ovr_B 208 H---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT-------- 274 (445)
T ss_dssp E---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEE--------
T ss_pred c---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEE--------
Confidence 5 478999999999999999998876 45578899999999 788999999999999999988765432
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-------------eeEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-------------IGKYKDGKHIVSAGEDSNVYMWNCIGHEE 548 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~-------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~ 548 (686)
...|...|.++.| ++..+++++.|+.|++||..+. .++.+++++|++|+.||.|++||+.+++
T Consensus 275 ~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~- 350 (445)
T 2ovr_B 275 LQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ- 350 (445)
T ss_dssp ECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCC-
T ss_pred ecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCc-
Confidence 2356688999999 5689999999999999997643 2344488999999999999999998765
Q ss_pred CCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCcC
Q 005646 549 PAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKL 628 (686)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~ 628 (686)
.+..+.... .+...+.++..+ +..+++++.|+.+.+|+..+.
T Consensus 351 -------~~~~~~~~~---------------------------~~~~~v~~~~~~----~~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 351 -------CLQTLQGPN---------------------------KHQSAVTCLQFN----KNFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp -------EEEEECSTT---------------------------SCSSCEEEEEEC----SSEEEEEETTSEEEEEETTTC
T ss_pred -------EEEEEccCC---------------------------CCCCCEEEEEEC----CCEEEEEeCCCeEEEEECCCC
Confidence 122221100 011111111112 235667788999999997765
Q ss_pred CCccccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCe----EeEEeecC
Q 005646 629 PALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGR----IRSFLNYG 681 (686)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~----Ir~w~~~g 681 (686)
.....+.... ...+ .....++ .+++.|.+|++|+.||+ |.+|.-..
T Consensus 393 ~~~~~~~~~~--~~~~----~~~v~~~-~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 393 EFIRNLVTLE--SGGS----GGVVWRI-RASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CEEEEEEECT--TGGG----TCEEEEE-EECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ceeeeeeccc--cCCC----CceEEEE-EecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 5333221000 0001 0112222 34566999999999998 99997544
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=279.02 Aligned_cols=264 Identities=16% Similarity=0.233 Sum_probs=215.0
Q ss_pred cceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCC
Q 005646 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (686)
Q Consensus 216 l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~ 294 (686)
+++++.+|.|+||++.+..... .....+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++......
T Consensus 50 ~~~~~~~g~i~v~~~~~~~~~~---~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~------ 120 (402)
T 2aq5_A 50 ICEASGGGAFLVLPLGKTGRVD---KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL------ 120 (402)
T ss_dssp EBCCSSSCCEEEEETTCCEECC---TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB------
T ss_pred EEEEcCCCEEEEEECccCCCCC---CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc------
Confidence 3457889999999986543221 22345788999999999999 9999999999999999999876422110
Q ss_pred CcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEE
Q 005646 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSAS 372 (686)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s 372 (686)
..++..+.+|...|.+++|+|++ +|++++
T Consensus 121 -------------------------------------------------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~ 151 (402)
T 2aq5_A 121 -------------------------------------------------REPVITLEGHTKRVGIVAWHPTAQNVLLSAG 151 (402)
T ss_dssp -------------------------------------------------CSCSEEEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred -------------------------------------------------CCceEEecCCCCeEEEEEECcCCCCEEEEEc
Confidence 13567788999999999999996 899999
Q ss_pred CCCcEEEEECCCCeeeeEe--e-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe--ccCCc-EEEEEEcc
Q 005646 373 IDKTVRLWRVGNDHCLRVF--P-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQI-VTAVCYRP 446 (686)
Q Consensus 373 ~Dg~V~iWd~~~~~~~~~~--~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~-V~~v~~sp 446 (686)
.|++|++||+.+++++..+ . |...|++++|+| ++++|++++.||.|++||+++++.+... .|... +.+++|+|
T Consensus 152 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (402)
T 2aq5_A 152 CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS 230 (402)
T ss_dssp TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS
T ss_pred CCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC
Confidence 9999999999999999988 4 999999999999 9999999999999999999999887554 55554 89999999
Q ss_pred CCCEEEEE---ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE-EEeCCCcEEEEeCCc----
Q 005646 447 DGQGGIVG---SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM-VSCADSQVRILQGPN---- 518 (686)
Q Consensus 447 dg~~l~~g---s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~-~~s~D~~I~iwd~~~---- 518 (686)
++++|++| +.|+.|++||+.+........ ...+...+.+++|+| ++..|+ +++.|+.|++||..+
T Consensus 231 ~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~v~~~~~s~-~~~~l~~~g~~dg~i~i~d~~~~~~~ 303 (402)
T 2aq5_A 231 EGKILTTGFSRMSERQVALWDTKHLEEPLSLQ------ELDTSSGVLLPFFDP-DTNIVYLCGKGDSSIRYFEITSEAPF 303 (402)
T ss_dssp TTEEEEEEECTTCCEEEEEEETTBCSSCSEEE------ECCCCSSCEEEEEET-TTTEEEEEETTCSCEEEEEECSSTTC
T ss_pred CCcEEEEeccCCCCceEEEEcCccccCCceEE------eccCCCceeEEEEcC-CCCEEEEEEcCCCeEEEEEecCCCcc
Confidence 99999999 799999999998765422111 123456799999999 666665 566799999998542
Q ss_pred --------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 519 --------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 --------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.++|+|++.++++ .|+.+++|++.++.
T Consensus 304 ~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 304 LHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred eEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 3567888888875 56799999998754
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=273.02 Aligned_cols=293 Identities=20% Similarity=0.238 Sum_probs=216.1
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
...|+++++++++++.++.|++|+.... ....+.+|...|++++|+|++++|++++.|+.|++||+.+++.+
T Consensus 113 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 113 CLAWSHDGNSIVTGVENGELRLWNKTGA--------LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSC--------EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCC--------eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 3567788889999999999999983221 12457789999999999999999999999999999999999988
Q ss_pred eeeccCCCCCcceEEe--ecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 286 TEVDIPEIDPSCIYFT--VNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
..+..+......+... ......+..+.+.+.... +....+..+.+|+... .+++..+.+|...|.+++|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~i~~~d~~~----~~~~~~~~~~~~~i~~~~~~ 256 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKF----VIPGPKGAIFVYQITE----KTPTGKLIGHHGPISVLEFN 256 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEE----EEECGGGCEEEEETTC----SSCSEEECCCSSCEEEEEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEE----EEEcCCCeEEEEEcCC----CceeeeeccCCCceEEEEEC
Confidence 8877665441100000 000000222222222211 1122233444444432 25677888999999999999
Q ss_pred CCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-EeccCCcEE
Q 005646 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVT 440 (686)
Q Consensus 364 ~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~ 440 (686)
|++ +|++++.|+.|++||+.+++++..+. |...|++++|+| ++ +|++++.||.|++||+++++.+. ...+...|+
T Consensus 257 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 334 (425)
T 1r5m_A 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334 (425)
T ss_dssp TTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEE
T ss_pred CCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEE
Confidence 999 99999999999999999999888887 999999999999 77 99999999999999999988774 445788999
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCCeeeeee------------eEEeeccccCCCC--CeEEEEEeCCCCCeEEEEe
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDA------------EICVHSKKKAPCK--RITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~------------~~~~~~~~~~~~~--~I~~l~fsp~~~~~l~~~s 506 (686)
+++|+|++++|++++.||.|++||+.+....... ..........|.. .|++++|+|
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---------- 404 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC---------- 404 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT----------
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC----------
Confidence 9999999999999999999999999765511000 0001111233433 788888888
Q ss_pred CCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 507 ADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 507 ~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
++++|++++.||.|+||++.
T Consensus 405 ------------------~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 405 ------------------AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ------------------TSSEEEEEESSSCCEEEECC
T ss_pred ------------------CCceEEEEecCceEEEEeec
Confidence 78888888888888888875
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=276.50 Aligned_cols=259 Identities=18% Similarity=0.389 Sum_probs=212.9
Q ss_pred cccCcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEee
Q 005646 201 DKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (686)
Q Consensus 201 ~~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~ 280 (686)
.+...+.+++++++.+++|+.|+.|++|+...... ...+.+|.+.|++++| ++++|++|+.||+|++||+.
T Consensus 131 ~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~-------~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC-------KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp SSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCE-------EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred CCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeE-------EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 44556888999999999999999999999765432 3567889999999999 78899999999999999998
Q ss_pred cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
+++ .+..+.+|...|.++
T Consensus 202 ~~~--------------------------------------------------------------~~~~~~~h~~~v~~l 219 (435)
T 1p22_A 202 TGE--------------------------------------------------------------MLNTLIHHCEAVLHL 219 (435)
T ss_dssp SCC--------------------------------------------------------------EEEEECCCCSCEEEE
T ss_pred CCc--------------------------------------------------------------EEEEEcCCCCcEEEE
Confidence 765 345566799999999
Q ss_pred EeeCCCEEEEEECCCcEEEEECCCCeee---eEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEecc
Q 005646 361 SWSKNNYLLSASIDKTVRLWRVGNDHCL---RVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDI 435 (686)
Q Consensus 361 ~~s~~~~L~s~s~Dg~V~iWd~~~~~~~---~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~ 435 (686)
+|++ +.|++++.|++|++||+.++..+ ..+. |...|++++| ++++|++|+.||.|++||+++++.+ .+..|
T Consensus 220 ~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 295 (435)
T 1p22_A 220 RFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH 295 (435)
T ss_dssp ECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC
Confidence 9974 49999999999999999988765 3343 9999999999 5689999999999999999999877 45568
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
...|.+++| +++++++|+.||.|++||+.+++.... ...|...|++++| ++..|++++.|+.|++||
T Consensus 296 ~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~--------~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd 362 (435)
T 1p22_A 296 KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV--------LEGHEELVRCIRF---DNKRIVSGAYDGKIKVWD 362 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE--------ECCCSSCEEEEEC---CSSEEEEEETTSCEEEEE
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEE--------EeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEE
Confidence 889999998 567999999999999999998765432 2357788999999 458999999999999999
Q ss_pred CCcc-----------e-----------eEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 516 GPNV-----------I-----------GKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 516 ~~~~-----------~-----------~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..+. + +...++++|++|+.||.|+|||+.+..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 363 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp HHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC-----
T ss_pred CCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCC
Confidence 5321 1 111289999999999999999998865
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-30 Score=273.40 Aligned_cols=238 Identities=14% Similarity=0.231 Sum_probs=195.6
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+.+.+|.+.|++++|+| ++|++|+.||.|+||++.+++....
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~------------------------------------ 51 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP------------------------------------ 51 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG------------------------------------
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC------------------------------------
Confidence 45788999999999998 7999999999999999987641110
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC----C----EEEEEECCCcEEEEECCCCee-----eeE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN----N----YLLSASIDKTVRLWRVGNDHC-----LRV 390 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~----~----~L~s~s~Dg~V~iWd~~~~~~-----~~~ 390 (686)
...+..+.+|...|.+++|+|+ + +|++++.|+.|++||+.+++. +..
T Consensus 52 --------------------~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 111 (397)
T 1sq9_A 52 --------------------KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK 111 (397)
T ss_dssp --------------------GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE
T ss_pred --------------------CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccccee
Confidence 0245667789999999999998 5 889999999999999998886 666
Q ss_pred ee-C-----CCCeEEEEEe----ecCCCE-EEEEEcCCcEEEEecCC------CcEE------EE-------eccCCcEE
Q 005646 391 FP-H-----SNYVTCVHFN----PVDDNY-FISGSIDGKVRIWAVLS------CHVV------DW-------VDIRQIVT 440 (686)
Q Consensus 391 ~~-h-----~~~V~~v~fs----p~~~~~-l~sgs~Dg~V~iwd~~~------~~~~------~~-------~~~~~~V~ 440 (686)
+. | ...|++++|+ | ++++ |++++.||.|++||+.+ ++.+ .+ ..+...|+
T Consensus 112 ~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 190 (397)
T 1sq9_A 112 LDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 190 (397)
T ss_dssp ECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCC
T ss_pred ecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCce
Confidence 66 6 5999999999 9 8999 99999999999999998 5433 33 23678899
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCC---CCCeEEEEEeCCCCCeEEEEeCC---CcEEEE
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP---CKRITGFQFLPQDSSKVMVSCAD---SQVRIL 514 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~I~~l~fsp~~~~~l~~~s~D---~~I~iw 514 (686)
+++|+|++ ++++++.||.|++||+.+++...... . ...| ...|.+++|+| ++.+|++++.| +.|++|
T Consensus 191 ~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~---~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~ 263 (397)
T 1sq9_A 191 SVDISERG-LIATGFNNGTVQISELSTLRPLYNFE--S---QHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLY 263 (397)
T ss_dssp EEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE--C---CC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEE
T ss_pred EEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEe--c---cccccccCCccceEEECC-CCCEEEEEecCCCCceEEEE
Confidence 99999999 99999999999999999876543211 1 1125 67899999999 78999999999 999999
Q ss_pred eCCc----------------------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 515 QGPN----------------------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 515 d~~~----------------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
|..+ .++++|++++|++++.||.|+|||+.+++
T Consensus 264 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (397)
T 1sq9_A 264 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 324 (397)
T ss_dssp ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred ECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 9531 35678899999999999999999998764
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-30 Score=278.37 Aligned_cols=308 Identities=15% Similarity=0.222 Sum_probs=213.7
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccc----cccccccCceecccC------------CceEEEEEeeCC--CEEEE
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSK----ELSALYKGQEIQAHD------------GSILTMKFSPDG--QYLAS 267 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~----~~~~~~~~~~l~~H~------------~~I~~l~fspdg--~~Las 267 (686)
..+|+++++++++|+.|+.|+||++..... ..........+++|. +.|++++|+|++ .+|++
T Consensus 33 ~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s 112 (447)
T 3dw8_B 33 TVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLL 112 (447)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEE
Confidence 356778889999999999999999876442 111112245678898 889999999998 89999
Q ss_pred EeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCe
Q 005646 268 AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPL 347 (686)
Q Consensus 268 gs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (686)
++.|++|++||+.++...............+. .......+..-...+.. +.....+.
T Consensus 113 ~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~----------------------~~~~~~~~ 169 (447)
T 3dw8_B 113 STNDKTIKLWKISERDKRPEGYNLKEEDGRYR-DPTTVTTLRVPVFRPMD----------------------LMVEASPR 169 (447)
T ss_dssp EECSSCEEEEEEEEEEEEEECCSCC---------CCCCCSCCCCEEEEEE----------------------EEEEEEEE
T ss_pred eCCCCeEEEEecccccCCcceecccCcccccc-CcccccceEeccccchh----------------------eeeeccce
Confidence 99999999999987664322111000000000 00000000000000000 00001223
Q ss_pred EEe-ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECC-CCeeeeEe--------eCCCCeEEEEEeecCC-CEEEEEEc
Q 005646 348 HEF-HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG-NDHCLRVF--------PHSNYVTCVHFNPVDD-NYFISGSI 415 (686)
Q Consensus 348 ~~l-~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~-~~~~~~~~--------~h~~~V~~v~fsp~~~-~~l~sgs~ 415 (686)
..+ .+|...|.+++|+|++ +|+++ .|++|++||+. .++++..+ .|...|++++|+| ++ ++|++|+.
T Consensus 170 ~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~ 247 (447)
T 3dw8_B 170 RIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSS 247 (447)
T ss_dssp EEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEET
T ss_pred EEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeC
Confidence 343 6899999999999999 88888 89999999999 45555533 3899999999999 76 99999999
Q ss_pred CCcEEEEecCCCcE-----EEEeccCC------------cEEEEEEccCCCEEEEEecCCcEEEEeCCC-CeeeeeeeEE
Q 005646 416 DGKVRIWAVLSCHV-----VDWVDIRQ------------IVTAVCYRPDGQGGIVGSMMGDCRFYNVSD-NHLELDAEIC 477 (686)
Q Consensus 416 Dg~V~iwd~~~~~~-----~~~~~~~~------------~V~~v~~spdg~~l~~gs~dg~i~iwd~~~-~~~~~~~~~~ 477 (686)
||+|++||+++++. ..+..+.. .|++++|+|+|++|++++. |.|++||+.. ++..... .
T Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~--~ 324 (447)
T 3dw8_B 248 KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY--Q 324 (447)
T ss_dssp TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE--E
T ss_pred CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee--e
Confidence 99999999998875 34444544 8999999999999999999 9999999986 4433211 1
Q ss_pred eeccccC------CCC---CeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc------------------------------
Q 005646 478 VHSKKKA------PCK---RITGFQFLPQDSSKVMVSCADSQVRILQGPN------------------------------ 518 (686)
Q Consensus 478 ~~~~~~~------~~~---~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~------------------------------ 518 (686)
.+..... ... .+..++|+| ++.+|++++.|+.|++||..+
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKR 403 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCC
T ss_pred ccccccccccccccccccccceEEEECC-CCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCc
Confidence 1111000 001 134599999 788999999999999999642
Q ss_pred -----------------ceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 519 -----------------VIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 519 -----------------~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
.++|+|++++||+++.++ +++|.-
T Consensus 404 ~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 404 KKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 167899999999998875 888864
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-29 Score=270.37 Aligned_cols=227 Identities=19% Similarity=0.243 Sum_probs=186.8
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCce
Q 005646 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (686)
.++.|+||++ ++||+|. |++|+|||+.+++....
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-------------------------------------------- 140 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQL-------------------------------------------- 140 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEE--------------------------------------------
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEE--------------------------------------------
Confidence 3667999975 5787765 89999999998874332
Q ss_pred EEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCE
Q 005646 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409 (686)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~ 409 (686)
..+.+|...|++|+|+|+| +|++|+.|++|+|||+.+++++..+. |...|.++.++ +.+
T Consensus 141 ----------------~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~ 201 (420)
T 4gga_A 141 ----------------LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYI 201 (420)
T ss_dssp ----------------EECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTE
T ss_pred ----------------EEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCE
Confidence 2345688899999999999 99999999999999999999999888 99999998875 579
Q ss_pred EEEEEcCCcEEEEecCCCcE--EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCC
Q 005646 410 FISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (686)
Q Consensus 410 l~sgs~Dg~V~iwd~~~~~~--~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 487 (686)
|++|+.|+.+++||...... ..+..|...+..+.++|+|+++++++.||.+++|+...++...... .....|..
T Consensus 202 l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~----~~~~~~~~ 277 (420)
T 4gga_A 202 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----QTFTQHQG 277 (420)
T ss_dssp EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS----EEECCCSS
T ss_pred EEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee----eeecccCC
Confidence 99999999999999987543 3567889999999999999999999999999999998765432111 11345678
Q ss_pred CeEEEEEeCCCCCeEEEE--eCCCcEEEEeCCcc--------------eeEcCCCCEEEEEe--CCCcEEEEeCCCCC
Q 005646 488 RITGFQFLPQDSSKVMVS--CADSQVRILQGPNV--------------IGKYKDGKHIVSAG--EDSNVYMWNCIGHE 547 (686)
Q Consensus 488 ~I~~l~fsp~~~~~l~~~--s~D~~I~iwd~~~~--------------~~~~~dg~~l~sgs--~Dg~V~iWd~~~~~ 547 (686)
.|.+++|+|.+...++++ +.|+.|++||..+. +.++++++.|++++ .|+.|+|||+.+++
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 355 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence 899999999777777764 47899999997642 56778999888765 78999999987754
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=280.48 Aligned_cols=282 Identities=10% Similarity=0.109 Sum_probs=214.9
Q ss_pred ccCcce--eeec-CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 202 KQGEGE--RVRL-NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 202 ~~~~~~--~~s~-~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
|...+. +|++ +++++++|+.|+.|+||++....... .......+ +|.+.|++++|+|++++|++|+.||+|++||
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd 139 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLK 139 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 344554 5667 77899999999999999986521111 01111122 5999999999999999999999999999999
Q ss_pred ee---cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEE--ecc-
Q 005646 279 VV---EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHE--FHG- 352 (686)
Q Consensus 279 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~- 352 (686)
+. +++.......+ .+.. +..
T Consensus 140 ~~~~~~~~~~~~~~~~------------------------------------------------------~i~~~~~~~~ 165 (437)
T 3gre_A 140 VNHYQQESEVKFLNCE------------------------------------------------------CIRKINLKNF 165 (437)
T ss_dssp EEEEEETTEEEEEEEE------------------------------------------------------EEEEEEGGGG
T ss_pred eccccCCceeeccccc------------------------------------------------------eeEEEEccCc
Confidence 95 44322221100 1111 112
Q ss_pred -CCCCeeEEE--eeCCC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 353 -HSGEILDLS--WSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 353 -h~~~V~~l~--~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
+...+.++. +++++ +|++++.|++|++||+++++++..+. |...|++++|+| ++++|++|+.||+|++||++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 166 GKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp SSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETT
T ss_pred ccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcC
Confidence 567788888 55778 99999999999999999999988886 789999999999 89999999999999999999
Q ss_pred CCcEEEEe--ccCCcEEEEEEcc----CCCEEEEEecCCcEEEEeCCCCeeeeeeeEE--------eec--------ccc
Q 005646 426 SCHVVDWV--DIRQIVTAVCYRP----DGQGGIVGSMMGDCRFYNVSDNHLELDAEIC--------VHS--------KKK 483 (686)
Q Consensus 426 ~~~~~~~~--~~~~~V~~v~~sp----dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~--------~~~--------~~~ 483 (686)
+++.+... .+...|++++|+| ++++|++|+.||.|++||+.+++........ ... ...
T Consensus 245 ~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (437)
T 3gre_A 245 FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC 324 (437)
T ss_dssp TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence 99887654 6778899996654 6889999999999999999988754422100 000 001
Q ss_pred --CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc------------------------------------------
Q 005646 484 --APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------------------------------------------ 519 (686)
Q Consensus 484 --~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~------------------------------------------ 519 (686)
.|...|++++|++ +.+|++++.|+.|++||..+.
T Consensus 325 ~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (437)
T 3gre_A 325 GIRSLNALSTISVSN--DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDD 402 (437)
T ss_dssp CCCSGGGGCCEEEET--TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC---------
T ss_pred ccccCCceEEEEECC--ceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCc
Confidence 2667799999994 489999999999999996431
Q ss_pred ----------eeEcCC--CCEEEEEeCCCcEEEEe
Q 005646 520 ----------IGKYKD--GKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 520 ----------~~~~~d--g~~l~sgs~Dg~V~iWd 542 (686)
+++.++ +.+|++|+.||.|+||+
T Consensus 403 ~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 403 SLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 234445 78999999999999995
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-29 Score=257.78 Aligned_cols=277 Identities=19% Similarity=0.320 Sum_probs=208.5
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
+.+++.++ +++.+.|++|+|||....... ....+.+|...|++++|+|++++||||+.||+|++|++.+++.+
T Consensus 30 ~l~WS~~~--~lAvg~D~tV~iWd~~tg~~~-----~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 30 LVDWSSGN--VLAVALDNSVYLWSASSGDIL-----QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CEEECTTS--EEEEEETTEEEEEETTTCCEE-----EEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEECCCC--EEEEEeCCEEEEEECCCCCEE-----EEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE
Confidence 34555443 455567999999998754321 11234578999999999999999999999999999999999988
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
..+..+.....+.... . .+ .+. .........+... .....+..+.+|...+..+.++++
T Consensus 103 ~~~~~h~~~~~~~~~~--~--~~-l~s-------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 161 (318)
T 4ggc_A 103 RNMTSHSARVGSLSWN--S--YI-LSS-------------GSRSGHIHHHDVR---VAEHHVATLSGHSQEVCGLRWAPD 161 (318)
T ss_dssp EEEECCSSCEEEEEEE--T--TE-EEE-------------EETTSEEEEEETT---SSSCEEEEEECCSSCEEEEEECTT
T ss_pred EEecCccceEEEeecC--C--CE-EEE-------------EecCCceEeeecC---CCceeEEEEcCccCceEEEEEcCC
Confidence 8877655433222111 1 00 001 1111122222111 112456778899999999999999
Q ss_pred C-EEEEEECCCcEEEEECCCCeee----eEe-eCCCCeEEEEEeecCCCEEE--EEEcCCcEEEEecCCCcEEEEeccCC
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHCL----RVF-PHSNYVTCVHFNPVDDNYFI--SGSIDGKVRIWAVLSCHVVDWVDIRQ 437 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~~----~~~-~h~~~V~~v~fsp~~~~~l~--sgs~Dg~V~iwd~~~~~~~~~~~~~~ 437 (686)
+ +|++++.|++|++||+.+++.. ... .+.+.|.+++++|.+...+. +++.+++|++||...........+..
T Consensus 162 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~ 241 (318)
T 4ggc_A 162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS 241 (318)
T ss_dssp SSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS
T ss_pred CCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee
Confidence 9 9999999999999999887533 222 28889999999995555553 55678999999999999998888999
Q ss_pred cEEEEEEccCCCEEEEEe--cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 438 IVTAVCYRPDGQGGIVGS--MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
.+..++|+|+++.+++++ .|+.|++||+.++++... ..+|...|++++|+|
T Consensus 242 ~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~--------l~gH~~~V~~l~~sp------------------- 294 (318)
T 4ggc_A 242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE--------LKGHTSRVLSLTMSP------------------- 294 (318)
T ss_dssp CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE--------ECCCSSCEEEEEECT-------------------
T ss_pred eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEE--------EcCCCCCEEEEEEcC-------------------
Confidence 999999999999888765 799999999998775432 345788999999999
Q ss_pred CCcceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 516 GPNVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 516 ~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
||++|+||+.||+|+|||+.+.
T Consensus 295 ---------dg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 295 ---------DGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp ---------TSSCEEEEETTTEEEEECCSCC
T ss_pred ---------CCCEEEEEecCCeEEEEECCCC
Confidence 8899999999999999998764
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=271.46 Aligned_cols=291 Identities=13% Similarity=0.235 Sum_probs=218.0
Q ss_pred ceecccCCceEEEEEeeCCCEE-EEEeC---CCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccce
Q 005646 244 QEIQAHDGSILTMKFSPDGQYL-ASAGD---DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKIS 319 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~L-asgs~---Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (686)
..+++|...|++++|+|++..| ++|+. |+.|+|||+.+++...
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~--------------------------------- 58 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL--------------------------------- 58 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE---------------------------------
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc---------------------------------
Confidence 3457799999999999998655 56665 9999999998765211
Q ss_pred eEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC---C-EEEEEECCCcEEEEECCCCe-eeeEee-C
Q 005646 320 ILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN---N-YLLSASIDKTVRLWRVGNDH-CLRVFP-H 393 (686)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~---~-~L~s~s~Dg~V~iWd~~~~~-~~~~~~-h 393 (686)
....+|...|.+++|+|+ + +|++++.|+.|++||+.+++ ++..+. |
T Consensus 59 ----------------------------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 110 (357)
T 3i2n_A 59 ----------------------------LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGH 110 (357)
T ss_dssp ----------------------------EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred ----------------------------eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEec
Confidence 112258899999999998 5 99999999999999999988 777777 9
Q ss_pred CCCeEEEEE------eecCCCEEEEEEcCCcEEEEecCCCc-EE-EEeccC----CcEEEEE----EccCCCEEEEEecC
Q 005646 394 SNYVTCVHF------NPVDDNYFISGSIDGKVRIWAVLSCH-VV-DWVDIR----QIVTAVC----YRPDGQGGIVGSMM 457 (686)
Q Consensus 394 ~~~V~~v~f------sp~~~~~l~sgs~Dg~V~iwd~~~~~-~~-~~~~~~----~~V~~v~----~spdg~~l~~gs~d 457 (686)
...|++++| +| ++++|++++.||.|++||++++. .+ .+..+. ..+.+++ |+|+++++++++.|
T Consensus 111 ~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 189 (357)
T 3i2n_A 111 KEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN 189 (357)
T ss_dssp SSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT
T ss_pred ccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC
Confidence 999999965 56 89999999999999999999876 33 333333 3788888 78899999999999
Q ss_pred CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC--CCCeEEEEeCCCcEEEEeCC------------------
Q 005646 458 GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ--DSSKVMVSCADSQVRILQGP------------------ 517 (686)
Q Consensus 458 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~--~~~~l~~~s~D~~I~iwd~~------------------ 517 (686)
|.|++||+.+++... ...|...|.+++|+|. ++..+++++.|+.|++||..
T Consensus 190 ~~i~i~d~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 260 (357)
T 3i2n_A 190 GDIKLFDLRNMALRW---------ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS 260 (357)
T ss_dssp SEEEEEETTTTEEEE---------EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSS
T ss_pred CeEEEEECccCceee---------ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcC
Confidence 999999999887532 1234578999999995 67899999999999999853
Q ss_pred --cceeEcCCCC-EEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCC
Q 005646 518 --NVIGKYKDGK-HIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDS 594 (686)
Q Consensus 518 --~~~~~~~dg~-~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~ 594 (686)
+.++++|+++ +|++|+.||.|++||+..+....... ..|.......+...+..+..|.
T Consensus 261 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~ 321 (357)
T 3i2n_A 261 TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD-------------------SEGIEMGVAGSVSLLQNVTLST 321 (357)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC-------------------TTSCCCCCCCEEEEEEEEECCS
T ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc-------------------CCCCccccccccceeeccccCC
Confidence 2367888998 89999999999999998765221110 0000000000112233333343
Q ss_pred --CcccccCCCccccCcccc-ccCCCCCCCCCCCCcC
Q 005646 595 --PENLAFAPARFSLGQEYV-FESFPKGCATWPEEKL 628 (686)
Q Consensus 595 --~~~~~~spd~~~~~~~~~-~~s~d~~~~~W~~~~~ 628 (686)
...++|+|+ +..++ +++.|+.+++|+..++
T Consensus 322 ~~v~~~~~s~~----~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 322 QPISSLDWSPD----KRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp SCEEEEEECSS----STTEEEEEETTSEEEEEEECC-
T ss_pred CCeeEEEEcCC----CCeEEEEecCCCcEEEEECCCc
Confidence 345678998 55565 6889999999996654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=272.76 Aligned_cols=245 Identities=16% Similarity=0.282 Sum_probs=191.9
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeecc
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (686)
.|.+.|++++|+|+|++||+|+.||.|+||++.+++........
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~------------------------------------ 69 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRG------------------------------------ 69 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCC------------------------------------
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccc------------------------------------
Confidence 37889999999999999999999999999999876521100000
Q ss_pred CCceEEEeCCccccccCCCeEEeccCC------------CCeeEEEeeCCC---EEEEEECCCcEEEEECCCCeee----
Q 005646 328 SESACVVFPPKVFRILEKPLHEFHGHS------------GEILDLSWSKNN---YLLSASIDKTVRLWRVGNDHCL---- 388 (686)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~h~------------~~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~~~~~---- 388 (686)
..+....+.+|. ..|.+++|+|++ +|++++.|++|++||+.++...
T Consensus 70 ---------------~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~ 134 (447)
T 3dw8_B 70 ---------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGY 134 (447)
T ss_dssp ---------------CEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECC
T ss_pred ---------------ceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCccee
Confidence 001345667787 889999999985 8999999999999999775442
Q ss_pred -----------------------------------eEe--eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC-CcEE
Q 005646 389 -----------------------------------RVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHVV 430 (686)
Q Consensus 389 -----------------------------------~~~--~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-~~~~ 430 (686)
..+ .|...|++++|+| ++++|++| .|++|++||+++ ++.+
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~ 212 (447)
T 3dw8_B 135 NLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSF 212 (447)
T ss_dssp SCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEE
T ss_pred cccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCcee
Confidence 122 3999999999999 99999998 799999999994 4444
Q ss_pred E--------EeccCCcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc--------cCCCCCeEEEE
Q 005646 431 D--------WVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK--------KAPCKRITGFQ 493 (686)
Q Consensus 431 ~--------~~~~~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~--------~~~~~~I~~l~ 493 (686)
. +..|...|++++|+|++ ++|++|+.||.|++||+.+++........+.... ..|...|++++
T Consensus 213 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 292 (447)
T 3dw8_B 213 NIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVK 292 (447)
T ss_dssp EEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEE
T ss_pred eeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEE
Confidence 4 33678899999999998 9999999999999999988764211001111100 11223899999
Q ss_pred EeCCCCCeEEEEeCCCcEEEEeCCc-------------------------------ceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 494 FLPQDSSKVMVSCADSQVRILQGPN-------------------------------VIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iwd~~~-------------------------------~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
|+| ++.+|++++. +.|++||..+ .++|+|++++|++|+.||.|+|||
T Consensus 293 ~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd 370 (447)
T 3dw8_B 293 FSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFD 370 (447)
T ss_dssp ECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEE
T ss_pred ECC-CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEE
Confidence 999 8899999988 9999999753 068999999999999999999999
Q ss_pred CCCCC
Q 005646 543 CIGHE 547 (686)
Q Consensus 543 ~~~~~ 547 (686)
+.+++
T Consensus 371 ~~~~~ 375 (447)
T 3dw8_B 371 RNTKR 375 (447)
T ss_dssp TTTCC
T ss_pred cCCCc
Confidence 99875
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-29 Score=266.91 Aligned_cols=279 Identities=15% Similarity=0.177 Sum_probs=215.3
Q ss_pred cccCccee--eec-CCCccceeeccceEEEEEcCCccccccccc------cCceecccCCceEEEEEee-CCCEEEEEeC
Q 005646 201 DKQGEGER--VRL-NEEDAMFCSKVQRVKVYHCKKRSKELSALY------KGQEIQAHDGSILTMKFSP-DGQYLASAGD 270 (686)
Q Consensus 201 ~~~~~~~~--~s~-~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~------~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~ 270 (686)
.|...+.+ |++ +++++++++.|+.|+||++........... ......+|...|++++|+| ++++|++++.
T Consensus 41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 35566544 556 778999999999999999876543211100 0111246999999999999 7889999999
Q ss_pred CCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe
Q 005646 271 DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (686)
Q Consensus 271 Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (686)
||.|++||+.+++....+
T Consensus 121 d~~i~iwd~~~~~~~~~~-------------------------------------------------------------- 138 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVF-------------------------------------------------------------- 138 (408)
T ss_dssp TSEEEEEETTTTEEEEEE--------------------------------------------------------------
T ss_pred CCeEEEeeCCCCccceec--------------------------------------------------------------
Confidence 999999999887633222
Q ss_pred ccCCCCeeEEEeeCC---C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCC-EEEEEEcCCcEEEEec
Q 005646 351 HGHSGEILDLSWSKN---N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDN-YFISGSIDGKVRIWAV 424 (686)
Q Consensus 351 ~~h~~~V~~l~~s~~---~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~-~l~sgs~Dg~V~iwd~ 424 (686)
.+...+.++.|++. + +|++++.|+.|++||+.+++++..+. |...|++++|+| ++. +|++|+.||.|++||+
T Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~ 216 (408)
T 4a11_B 139 -NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDV 216 (408)
T ss_dssp -ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEET
T ss_pred -cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEEC
Confidence 25667888888874 3 89999999999999999999988888 999999999999 666 6999999999999999
Q ss_pred CCCc-EEEE----------------eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCC
Q 005646 425 LSCH-VVDW----------------VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (686)
Q Consensus 425 ~~~~-~~~~----------------~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 487 (686)
+++. .+.. ..|...|++++|+|++++|++++.||.|++||+.+++....... .......
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~ 292 (408)
T 4a11_B 217 RRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG----KVCNNSK 292 (408)
T ss_dssp TCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC----CCCCCCS
T ss_pred CCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccc----ccccccc
Confidence 8765 2221 35778899999999999999999999999999998765432111 1111111
Q ss_pred CeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 488 RITGFQFLPQDSSKVMVSCADSQVRILQGP---------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 488 ~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~---------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
....+.+.......+++++.|+.|++||.. +.++++|++++|++|+.||.|++|++.+.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 293 KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 122333444456788888999999999964 347899999999999999999999999876
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=263.06 Aligned_cols=268 Identities=11% Similarity=0.076 Sum_probs=215.6
Q ss_pred ccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCC-EEEEEeCCCcEEEEE
Q 005646 202 KQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQ 278 (686)
Q Consensus 202 ~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~vWd 278 (686)
|...+ .+|+++++.+++++.|+.|+||++........ ...+.+|...|++++|+|+++ +|++|+.||.|++||
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD----LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE----EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc----ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 44444 45677888999999999999999876542111 134558999999999999999 999999999999999
Q ss_pred e-ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc--CCC
Q 005646 279 V-VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG--HSG 355 (686)
Q Consensus 279 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--h~~ 355 (686)
+ .+++ ...+.+ |..
T Consensus 86 ~~~~~~---------------------------------------------------------------~~~~~~~~~~~ 102 (342)
T 1yfq_A 86 LIGSPS---------------------------------------------------------------FQALTNNEANL 102 (342)
T ss_dssp SSSSSS---------------------------------------------------------------EEECBSCCCCS
T ss_pred eccCCc---------------------------------------------------------------eEeccccCCCC
Confidence 8 7654 234456 999
Q ss_pred CeeEEEeeCCC-EEEEEECCCcEEEEECCC---------CeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGN---------DHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~---------~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
.|.+++|+| + +|++++.|+.|++||+.+ ++++..+.|...|++++|+| +. |++++.|+.|++||++
T Consensus 103 ~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~ 178 (342)
T 1yfq_A 103 GICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLP 178 (342)
T ss_dssp CEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS-SE--EEEEESTTEEEEEESS
T ss_pred ceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC-Cc--EEEEeCCCeEEEEECC
Confidence 999999999 7 999999999999999998 88888888999999999998 55 9999999999999999
Q ss_pred C-CcE---EEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCC------eeeeeeeEEeecc---ccCCCCCeEE
Q 005646 426 S-CHV---VDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDN------HLELDAEICVHSK---KKAPCKRITG 491 (686)
Q Consensus 426 ~-~~~---~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~------~~~~~~~~~~~~~---~~~~~~~I~~ 491 (686)
+ +.. .....+...|.+++|+| +++++++++.||.|++|++... +... .+..+.. ...|...|++
T Consensus 179 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~ 256 (342)
T 1yfq_A 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF--AFRCHRLNLKDTNLAYPVNS 256 (342)
T ss_dssp CCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE--EEECCCCCTTCCSSCCCEEE
T ss_pred ccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce--eeecccccccccccceeEEE
Confidence 8 542 24456788999999999 9999999999999999999876 2221 1111110 0123458999
Q ss_pred EEEeCCCCCeEEEEeCCCcEEEEeCCcc--------------eeEcCCCCEEEEEeCCCc-EEEEeC
Q 005646 492 FQFLPQDSSKVMVSCADSQVRILQGPNV--------------IGKYKDGKHIVSAGEDSN-VYMWNC 543 (686)
Q Consensus 492 l~fsp~~~~~l~~~s~D~~I~iwd~~~~--------------~~~~~dg~~l~sgs~Dg~-V~iWd~ 543 (686)
++|+| ++.+|++++.|+.|++||..+. ....+++++|++|+.||. .+.|..
T Consensus 257 ~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 257 IEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred EEEcC-CCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCcccccccc
Confidence 99999 7889999999999999996532 111279999999999999 666664
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-29 Score=256.19 Aligned_cols=267 Identities=17% Similarity=0.181 Sum_probs=211.0
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+.+.+|.+.|++++| |++++|++|+.||.|++||+.+++
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~--------------------------------------- 50 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW--------------------------------------- 50 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE---------------------------------------
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE---------------------------------------
Confidence 4568899999999999 999999999999999999997654
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCC---eeeeEee-CCCCe
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND---HCLRVFP-HSNYV 397 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~---~~~~~~~-h~~~V 397 (686)
....+..|...|.+++|+|++ +|++++.|+.|++|++... +++..+. |...|
T Consensus 51 -----------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i 107 (313)
T 3odt_A 51 -----------------------LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNV 107 (313)
T ss_dssp -----------------------EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCE
T ss_pred -----------------------EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCE
Confidence 234455689999999999999 9999999999999998764 4555565 99999
Q ss_pred EEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeE
Q 005646 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (686)
Q Consensus 398 ~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~ 476 (686)
++++| ++++|++++.||.|++|| .......+..|...+.+++|.| +++++++++.||.|++||... ...
T Consensus 108 ~~~~~---~~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~---- 177 (313)
T 3odt_A 108 CSLSF---QDGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIK---- 177 (313)
T ss_dssp EEEEE---ETTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--EEE----
T ss_pred EEEEe---cCCEEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--eEE----
Confidence 99999 357999999999999999 3333446667899999999999 999999999999999999432 211
Q ss_pred EeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEE
Q 005646 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 477 ~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iW 541 (686)
.....|...|.+++|+| ++. +++++.|+.|++||..+ .++++|++ .|++++.||.|++|
T Consensus 178 ---~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iw 251 (313)
T 3odt_A 178 ---TFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIW 251 (313)
T ss_dssp ---EECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEE
T ss_pred ---EEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEE
Confidence 11233678899999999 555 99999999999999653 36788898 69999999999999
Q ss_pred eCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCC
Q 005646 542 NCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCA 621 (686)
Q Consensus 542 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~ 621 (686)
|+.+++ .+..+..+ ......++|+|++. +++++.|+.+.
T Consensus 252 d~~~~~--------~~~~~~~~----------------------------~~~i~~~~~~~~~~-----~~~~~~dg~i~ 290 (313)
T 3odt_A 252 SKENGS--------LKQVITLP----------------------------AISIWSVDCMSNGD-----IIVGSSDNLVR 290 (313)
T ss_dssp CTTTCC--------EEEEEECS----------------------------SSCEEEEEECTTSC-----EEEEETTSCEE
T ss_pred ECCCCc--------eeEEEecc----------------------------CceEEEEEEccCCC-----EEEEeCCCcEE
Confidence 998865 11111111 11233456788742 55678899999
Q ss_pred CCCCCcCC
Q 005646 622 TWPEEKLP 629 (686)
Q Consensus 622 ~W~~~~~~ 629 (686)
+|+.++..
T Consensus 291 iw~~~~~~ 298 (313)
T 3odt_A 291 IFSQEKSR 298 (313)
T ss_dssp EEESCGGG
T ss_pred EEeCCCCc
Confidence 99966543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-28 Score=253.00 Aligned_cols=226 Identities=19% Similarity=0.246 Sum_probs=182.4
Q ss_pred eEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceE
Q 005646 253 ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332 (686)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (686)
..+|+||+++ +||+| .|++|+|||+.+++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-------------------------------------------- 61 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-------------------------------------------- 61 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE--------------------------------------------
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE--------------------------------------------
Confidence 4679999886 77776 5999999999988744322
Q ss_pred EEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEE
Q 005646 333 VVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYF 410 (686)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l 410 (686)
.+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+. |...+.++.+ ++.++
T Consensus 62 ----------------~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l 122 (318)
T 4ggc_A 62 ----------------QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYIL 122 (318)
T ss_dssp ----------------ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEE
T ss_pred ----------------EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEE
Confidence 234688899999999999 99999999999999999999999888 8888887665 56899
Q ss_pred EEEEcCCcEEEEecCCCcE--EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCC
Q 005646 411 ISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (686)
Q Consensus 411 ~sgs~Dg~V~iwd~~~~~~--~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 488 (686)
++|+.++.+++|+...... .....|...+..+.+.++++++++++.||.|++||+.+++....... ....+...
T Consensus 123 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~ 198 (318)
T 4ggc_A 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ----TFTQHQGA 198 (318)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE----EECCCCSC
T ss_pred EEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee----eecccCCc
Confidence 9999999999999987643 35678899999999999999999999999999999987654332211 13345678
Q ss_pred eEEEEEeCCCCCeEE--EEeCCCcEEEEeCCc--------------ceeEcCCCCEEEEEe--CCCcEEEEeCCCCC
Q 005646 489 ITGFQFLPQDSSKVM--VSCADSQVRILQGPN--------------VIGKYKDGKHIVSAG--EDSNVYMWNCIGHE 547 (686)
Q Consensus 489 I~~l~fsp~~~~~l~--~~s~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs--~Dg~V~iWd~~~~~ 547 (686)
|..+.++|.+...+. +++.++.|++||... .+.+.++++.+++++ .|+.|+|||+.+++
T Consensus 199 v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~ 275 (318)
T 4ggc_A 199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 275 (318)
T ss_dssp EEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred eEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc
Confidence 999999996666554 455778999998653 356777888887765 78999999987754
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-28 Score=259.06 Aligned_cols=235 Identities=19% Similarity=0.324 Sum_probs=195.3
Q ss_pred CceecccCCceEEEEEeeC---CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccce
Q 005646 243 GQEIQAHDGSILTMKFSPD---GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKIS 319 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspd---g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (686)
.+.+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+...
T Consensus 32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~----------------------------------- 76 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ----------------------------------- 76 (368)
T ss_dssp EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-----------------------------------
T ss_pred eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-----------------------------------
Confidence 3567889999999999999 69999999999999999986320
Q ss_pred eEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeE
Q 005646 320 ILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVT 398 (686)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~ 398 (686)
.....+.+|...|.+++|+|++ +|++++.|++|++||+.+++++....|...|+
T Consensus 77 -------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~ 131 (368)
T 3mmy_A 77 -------------------------TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK 131 (368)
T ss_dssp -------------------------EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE
T ss_pred -------------------------eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceE
Confidence 1224566799999999999999 99999999999999999999999888999999
Q ss_pred EEEE--eecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeE
Q 005646 399 CVHF--NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (686)
Q Consensus 399 ~v~f--sp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~ 476 (686)
+++| +| ++++|++++.||.|++||+++++.+........+.++.+.+ ..+++++.++.+++|++.........
T Consensus 132 ~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~-- 206 (368)
T 3mmy_A 132 TIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRR-- 206 (368)
T ss_dssp EEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEE--
T ss_pred EEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhh--
Confidence 9999 77 88899999999999999999998887777777777777665 48889999999999999876543211
Q ss_pred EeeccccCCCCCeEEEEEeCCCCC----eEEEEeCCCcEEEEeCC------------------------------cceeE
Q 005646 477 CVHSKKKAPCKRITGFQFLPQDSS----KVMVSCADSQVRILQGP------------------------------NVIGK 522 (686)
Q Consensus 477 ~~~~~~~~~~~~I~~l~fsp~~~~----~l~~~s~D~~I~iwd~~------------------------------~~~~~ 522 (686)
....+...+..+.+.+ +.. .+++++.|+.|++|+.. +.+++
T Consensus 207 ----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 281 (368)
T 3mmy_A 207 ----IESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF 281 (368)
T ss_dssp ----CCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEE
T ss_pred ----ccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEE
Confidence 1222334566666665 333 39999999999999854 24678
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 523 YKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 523 ~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+|++++|++|+.||.|+|||+.+++
T Consensus 282 sp~~~~l~s~~~dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 282 HPVHGTLATVGSDGRFSFWDKDART 306 (368)
T ss_dssp CTTTCCEEEEETTSCEEEEETTTTE
T ss_pred ecCCCEEEEEccCCeEEEEECCCCc
Confidence 9999999999999999999998754
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=265.65 Aligned_cols=228 Identities=16% Similarity=0.227 Sum_probs=186.3
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeecc
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (686)
+|...+....+++++..+++++.|+.|++||+.+++....+.
T Consensus 89 ~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~-------------------------------------- 130 (401)
T 4aez_A 89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAE-------------------------------------- 130 (401)
T ss_dssp TCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEE--------------------------------------
T ss_pred CCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeee--------------------------------------
Confidence 455544443334444568889999999999998876322211
Q ss_pred CCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeec
Q 005646 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV 405 (686)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~ 405 (686)
..|...|.+++|+|++ +|++++.||.|++||+.+++.+..+. |...|.+++|+
T Consensus 131 -----------------------~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-- 185 (401)
T 4aez_A 131 -----------------------TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN-- 185 (401)
T ss_dssp -----------------------CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--
T ss_pred -----------------------cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--
Confidence 1378899999999999 99999999999999999999998887 99999999995
Q ss_pred CCCEEEEEEcCCcEEEEecCC-Cc-EEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecccc
Q 005646 406 DDNYFISGSIDGKVRIWAVLS-CH-VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (686)
Q Consensus 406 ~~~~l~sgs~Dg~V~iwd~~~-~~-~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 483 (686)
+++|++|+.||.|++||++. .. ...+..|...|++++|+|++++|++|+.||.|++||+.+...... ..
T Consensus 186 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~--------~~ 256 (401)
T 4aez_A 186 -RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT--------KT 256 (401)
T ss_dssp -TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE--------EC
T ss_pred -CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE--------ec
Confidence 47999999999999999984 33 346667899999999999999999999999999999988654331 23
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEe--CCCcEEEEeCCc--------------ceeEcCCCCEEEEEe--CCCcEEEEeCCC
Q 005646 484 APCKRITGFQFLPQDSSKVMVSC--ADSQVRILQGPN--------------VIGKYKDGKHIVSAG--EDSNVYMWNCIG 545 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s--~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs--~Dg~V~iWd~~~ 545 (686)
.|...|.+++|+|++..++++++ .|+.|++||..+ .++++|++++|++++ .||.|+||++.+
T Consensus 257 ~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 46788999999996667777765 799999999653 367889999999954 899999999876
Q ss_pred CC
Q 005646 546 HE 547 (686)
Q Consensus 546 ~~ 547 (686)
+.
T Consensus 337 ~~ 338 (401)
T 4aez_A 337 SG 338 (401)
T ss_dssp TE
T ss_pred cc
Confidence 43
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=280.80 Aligned_cols=266 Identities=12% Similarity=0.061 Sum_probs=201.4
Q ss_pred CCccceeeccceEEEEEcCCccccc----cccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeee
Q 005646 213 EEDAMFCSKVQRVKVYHCKKRSKEL----SALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEV 288 (686)
Q Consensus 213 ~~~l~~g~~d~~v~vw~~~~~~~~~----~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~ 288 (686)
+..||+++.|++|+||++....... ........+.+|...|++++|++++ +||+|+.||+|++||+.++.
T Consensus 225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~----- 298 (524)
T 2j04_B 225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE----- 298 (524)
T ss_dssp SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS-----
T ss_pred CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC-----
Confidence 4589999999999999987543210 0011223678999999999999864 89999999999999997643
Q ss_pred ccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE--EeeCCC
Q 005646 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL--SWSKNN 366 (686)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l--~~s~~~ 366 (686)
.+...+.+|...|.++ +|+|++
T Consensus 299 --------------------------------------------------------~~~~~~~~H~~~V~sv~~~~s~~g 322 (524)
T 2j04_B 299 --------------------------------------------------------VPSFYDQVHDSYILSVSTAYSDFE 322 (524)
T ss_dssp --------------------------------------------------------SCSEEEECSSSCEEEEEEECCTTS
T ss_pred --------------------------------------------------------CceEEeecccccEEEEEEEcCCCC
Confidence 2345567899999999 578875
Q ss_pred --EEEEEECCCcEEEEECCCCeeeeEee-CC--CCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE-EEEeccCCcEE
Q 005646 367 --YLLSASIDKTVRLWRVGNDHCLRVFP-HS--NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-VDWVDIRQIVT 440 (686)
Q Consensus 367 --~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~--~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~-~~~~~~~~~V~ 440 (686)
+|+|++.|++|+|||+++++++..+. |. ..|.+++|+| ++..|++++.|++|++||++++.+ ..+.+|...|+
T Consensus 323 ~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~ 401 (524)
T 2j04_B 323 DTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTIT 401 (524)
T ss_dssp CCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEE
T ss_pred CeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecCCCceE
Confidence 88999999999999999988877665 54 3589999999 899999999999999999999876 45678999999
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe-----
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ----- 515 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd----- 515 (686)
+|+|+|+|++|++|+.||+|++||+....+..... .....+...|..++|+| ++..+. ...+..+..|+
T Consensus 402 sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~----~~~~~~~~~v~~v~~sp-~g~~~~-~~~~~~~~~~~~~g~~ 475 (524)
T 2j04_B 402 AIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKN----SSATQKSLRLWKWDYSI-KDDKYR-IDSSYEVYPLTVNDVS 475 (524)
T ss_dssp EEECCSSCCBCEEEETTTEEECCBSCSSTTTCC----------CCCCEEEECBCCS-SSCEEE-ECCCCCCCC-------
T ss_pred EEEeCCCCCeEEEEECCCEEEEEechHhhcccccc----CccceeeeEEEEeccCC-CCCeEE-ccCCceecccccCCcc
Confidence 99999999999999999999999986532110000 00001223578899999 555332 22222222221
Q ss_pred ---------CCcceeEcCCC---CEEEEEeCCCcEEEEeCCCCC
Q 005646 516 ---------GPNVIGKYKDG---KHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 516 ---------~~~~~~~~~dg---~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
....++|+|++ .+||+|+.||.|+||++....
T Consensus 476 ~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 476 KAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp ------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred eeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 22468999985 599999999999999997643
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=260.38 Aligned_cols=231 Identities=16% Similarity=0.165 Sum_probs=182.7
Q ss_pred ccceeeccceEEEEEcCCccccccccc--cCceecccCCceEEEEEeeCCCEEEEE--eCCCcEEEEEeecCeeeeeecc
Q 005646 215 DAMFCSKVQRVKVYHCKKRSKELSALY--KGQEIQAHDGSILTMKFSPDGQYLASA--GDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~~~~~~~--~~~~l~~H~~~I~~l~fspdg~~Lasg--s~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
.++.++.++.+++|++......+.... .......+...+.+++|||||++||+| +.|++|+|||+.+++.+.
T Consensus 96 ~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~---- 171 (365)
T 4h5i_A 96 KITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF---- 171 (365)
T ss_dssp HHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE----
T ss_pred EEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE----
Confidence 344566788999999866543332221 122334566779999999999998755 478999999998876332
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL 369 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~ 369 (686)
.+ .|.+.|.+++|+|+| +|+
T Consensus 172 ----------------------------------------------------------~~-~~~~~V~~v~fspdg~~l~ 192 (365)
T 4h5i_A 172 ----------------------------------------------------------EI-ETRGEVKDLHFSTDGKVVA 192 (365)
T ss_dssp ----------------------------------------------------------EE-ECSSCCCEEEECTTSSEEE
T ss_pred ----------------------------------------------------------Ee-CCCCceEEEEEccCCceEE
Confidence 22 267789999999999 777
Q ss_pred EEECCCcEEEEECCCCeeeeEe---eCCCCeEEEEEeecCCCEEEEEEcCC----cEEEEecCCCcE-----EEEeccCC
Q 005646 370 SASIDKTVRLWRVGNDHCLRVF---PHSNYVTCVHFNPVDDNYFISGSIDG----KVRIWAVLSCHV-----VDWVDIRQ 437 (686)
Q Consensus 370 s~s~Dg~V~iWd~~~~~~~~~~---~h~~~V~~v~fsp~~~~~l~sgs~Dg----~V~iwd~~~~~~-----~~~~~~~~ 437 (686)
+++ ++.+++|+..+++.+... .|...|.+++|+| ++.++++++.|+ .+++|++..... .....|..
T Consensus 193 s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 270 (365)
T 4h5i_A 193 YIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK 270 (365)
T ss_dssp EEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS
T ss_pred ecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCC
Confidence 777 556777777777665433 2888999999999 999999999987 688999887653 24557888
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
.|++++|+|||++||+|+.|++|+|||+.++++.. ....+|...|++++|+| ++++|++++.|++||||+++
T Consensus 271 ~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~-------~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 271 GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSK-------IFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE-------EETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECC
T ss_pred CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEE-------EecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcC
Confidence 99999999999999999999999999999887543 12457889999999999 89999999999999999986
Q ss_pred c
Q 005646 518 N 518 (686)
Q Consensus 518 ~ 518 (686)
.
T Consensus 343 ~ 343 (365)
T 4h5i_A 343 L 343 (365)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-29 Score=290.20 Aligned_cols=239 Identities=19% Similarity=0.286 Sum_probs=201.3
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
..+.+|.++|++++|+|+|++|++|+.||+|+|||+.++..
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~--------------------------------------- 43 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH--------------------------------------- 43 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE---------------------------------------
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC---------------------------------------
Confidence 45788999999999999999999999999999999974431
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC--C-EEEEEECCCcEEEEECCCCe--eeeEee-CCCCe
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYV 397 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~--~~~~~~-h~~~V 397 (686)
+.+..+.+|.+.|.+++|+|+ + +|++++.||+|++||+.+++ .+..+. |...|
T Consensus 44 ---------------------~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V 102 (753)
T 3jro_A 44 ---------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV 102 (753)
T ss_dssp ---------------------EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred ---------------------ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCe
Confidence 245667789999999999987 7 99999999999999999987 555555 99999
Q ss_pred EEEEEeecC--CCEEEEEEcCCcEEEEecCCC---cEEEEeccCCcEEEEEEcc-------------CCCEEEEEecCCc
Q 005646 398 TCVHFNPVD--DNYFISGSIDGKVRIWAVLSC---HVVDWVDIRQIVTAVCYRP-------------DGQGGIVGSMMGD 459 (686)
Q Consensus 398 ~~v~fsp~~--~~~l~sgs~Dg~V~iwd~~~~---~~~~~~~~~~~V~~v~~sp-------------dg~~l~~gs~dg~ 459 (686)
++++|+| + +++|++|+.||+|++||++++ .......|...|++++|+| +++.+++|+.||.
T Consensus 103 ~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~ 181 (753)
T 3jro_A 103 NSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181 (753)
T ss_dssp EEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC
T ss_pred EEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe
Confidence 9999999 7 899999999999999999887 3446668899999999999 5899999999999
Q ss_pred EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC--CCeEEEEeCCCcEEEEeCCc-------------------
Q 005646 460 CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD--SSKVMVSCADSQVRILQGPN------------------- 518 (686)
Q Consensus 460 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~--~~~l~~~s~D~~I~iwd~~~------------------- 518 (686)
|++||+.++..... .......|...|++++|+|++ +..+++++.|+.|++||..+
T Consensus 182 I~iwd~~~~~~~~~----~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 257 (753)
T 3jro_A 182 VKIWKYNSDAQTYV----LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 257 (753)
T ss_dssp EEEEEEETTTTEEE----EEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCC
T ss_pred EEEEeccCCcccce----eeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCce
Confidence 99999987643221 112234577899999999943 89999999999999998543
Q ss_pred -ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 519 -VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 -~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.++|+|+|++|++|+.||.|+||++..+.
T Consensus 258 ~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 258 WRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 36789999999999999999999998654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-28 Score=259.19 Aligned_cols=249 Identities=16% Similarity=0.248 Sum_probs=203.2
Q ss_pred cccCcce--eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC--CCEEEEEeCCCcEEE
Q 005646 201 DKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD--GQYLASAGDDGVVRL 276 (686)
Q Consensus 201 ~~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~I~v 276 (686)
.|...+. +|+++++++++++.|+.|+||++...... ....+.+|...|++++|+++ +++|++|+.||.|++
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK-----LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE-----EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce-----eeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 4555554 46677889999999999999998643222 23567889999999999987 999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.+++. ..+..+.+|...
T Consensus 84 wd~~~~~~------------------------------------------------------------~~~~~~~~~~~~ 103 (379)
T 3jrp_A 84 WKEENGRW------------------------------------------------------------SQIAVHAVHSAS 103 (379)
T ss_dssp EEEETTEE------------------------------------------------------------EEEEEECCCSSC
T ss_pred EEcCCCce------------------------------------------------------------eEeeeecCCCcc
Confidence 99987651 134455679999
Q ss_pred eeEEEeeCC--C-EEEEEECCCcEEEEECCCCeeee--Ee-eCCCCeEEEEEeec------------CCCEEEEEEcCCc
Q 005646 357 ILDLSWSKN--N-YLLSASIDKTVRLWRVGNDHCLR--VF-PHSNYVTCVHFNPV------------DDNYFISGSIDGK 418 (686)
Q Consensus 357 V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~~~~--~~-~h~~~V~~v~fsp~------------~~~~l~sgs~Dg~ 418 (686)
|.+++|+|+ + +|++++.|++|++||+.++.... .+ .|...|++++|+|. ++.+|++|+.||.
T Consensus 104 v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 183 (379)
T 3jrp_A 104 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 183 (379)
T ss_dssp EEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSC
T ss_pred eEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCe
Confidence 999999998 7 99999999999999999874332 23 49999999999994 5899999999999
Q ss_pred EEEEecCCCc----EE-EEeccCCcEEEEEEccC---CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeE
Q 005646 419 VRIWAVLSCH----VV-DWVDIRQIVTAVCYRPD---GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (686)
Q Consensus 419 V~iwd~~~~~----~~-~~~~~~~~V~~v~~spd---g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~ 490 (686)
|++||++++. .. .+..|...|++++|+|+ +++|++++.||.|++||+.++....... ......|...|+
T Consensus 184 i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~v~ 260 (379)
T 3jrp_A 184 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT---LLKEEKFPDVLW 260 (379)
T ss_dssp EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE---ESSSSCCSSCEE
T ss_pred EEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceee---eeccccCCCcEE
Confidence 9999998764 22 45568899999999999 8999999999999999998764221111 112344678899
Q ss_pred EEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 491 GFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 491 ~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
+++|+| ++.+|++++.|+.|++|+...
T Consensus 261 ~~~~s~-~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 261 RASWSL-SGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEECS-SSCCEEEEESSSSEEEEEEEE
T ss_pred EEEEcC-CCCEEEEecCCCcEEEEeCCC
Confidence 999999 889999999999999999764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=254.96 Aligned_cols=261 Identities=16% Similarity=0.239 Sum_probs=205.4
Q ss_pred cccCcce--eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee--CCCEEEEEeCCCcEEE
Q 005646 201 DKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRL 276 (686)
Q Consensus 201 ~~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~v 276 (686)
.|...+. +|+++++++++++.|+.|+||++....... .....+.+|...|++++|+| ++++|++|+.||.|++
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW---ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE---EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc---eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 4555554 456778899999999999999987643221 12356788999999999999 6999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.+++...... ..+++..+.+|...
T Consensus 86 wd~~~~~~~~~~~-----------------------------------------------------~~~~~~~~~~~~~~ 112 (351)
T 3f3f_A 86 WEEDPDQEECSGR-----------------------------------------------------RWNKLCTLNDSKGS 112 (351)
T ss_dssp EEECTTSCTTSSC-----------------------------------------------------SEEEEEEECCCSSC
T ss_pred EecCCCccccccc-----------------------------------------------------CcceeeeecccCCc
Confidence 9998764210000 00245667789999
Q ss_pred eeEEEeeCC--C-EEEEEECCCcEEEEECCCCeeeeEe--------------eCCCCeEEEEEeec--CCCEEEEEEcCC
Q 005646 357 ILDLSWSKN--N-YLLSASIDKTVRLWRVGNDHCLRVF--------------PHSNYVTCVHFNPV--DDNYFISGSIDG 417 (686)
Q Consensus 357 V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~~~~~~--------------~h~~~V~~v~fsp~--~~~~l~sgs~Dg 417 (686)
|.+++|+|+ + +|++++.|++|++||+.+++++..+ .|...+.+++|+|. ++.+|++++.|+
T Consensus 113 v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 192 (351)
T 3f3f_A 113 LYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ 192 (351)
T ss_dssp EEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE
T ss_pred eeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCC
Confidence 999999998 7 9999999999999999988755433 37789999999993 289999999999
Q ss_pred cEEEEecCCCcE---EEEeccCCcEEEEEEccCC----CEEEEEecCCcEEEEeCCCCeeeee-----------------
Q 005646 418 KVRIWAVLSCHV---VDWVDIRQIVTAVCYRPDG----QGGIVGSMMGDCRFYNVSDNHLELD----------------- 473 (686)
Q Consensus 418 ~V~iwd~~~~~~---~~~~~~~~~V~~v~~spdg----~~l~~gs~dg~i~iwd~~~~~~~~~----------------- 473 (686)
.+.+|+...++. ..+..|...|++++|+|++ ++|++|+.||.|++||+........
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (351)
T 3f3f_A 193 AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADV 272 (351)
T ss_dssp EEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------
T ss_pred cEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccc
Confidence 998888888764 2445688899999999998 8999999999999999976421110
Q ss_pred ---------------------eeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 474 ---------------------AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 474 ---------------------~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
...........|...|++++|+| ++.+|++++.|+.|++|+..+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 273 DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp ------------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEETTSCEEEEEECT
T ss_pred ccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEEEEecCCCcEEEEecCc
Confidence 01122223456888999999999 789999999999999999874
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=256.71 Aligned_cols=233 Identities=14% Similarity=0.138 Sum_probs=196.0
Q ss_pred ecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEee
Q 005646 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (686)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (686)
..+|.+.|++++|+|++++|++++.|+.|+||++.++...
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~---------------------------------------- 46 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN---------------------------------------- 46 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------------------------------------
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------------------------------------
Confidence 3579999999999999999999999999999999875411
Q ss_pred ccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEEC-CCCeeeeEee--CCCCeEEE
Q 005646 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRV-GNDHCLRVFP--HSNYVTCV 400 (686)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~-~~~~~~~~~~--h~~~V~~v 400 (686)
.+...+.+|...|.+++|+|++ +|++++.|+.|++||+ .+++...... |...|+++
T Consensus 47 -------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l 107 (342)
T 1yfq_A 47 -------------------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRI 107 (342)
T ss_dssp -------------------EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEE
T ss_pred -------------------ccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEE
Confidence 0123345799999999999987 5999999999999999 8887766666 99999999
Q ss_pred EEeecCCCEEEEEEcCCcEEEEecCC---------CcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC-Cee
Q 005646 401 HFNPVDDNYFISGSIDGKVRIWAVLS---------CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD-NHL 470 (686)
Q Consensus 401 ~fsp~~~~~l~sgs~Dg~V~iwd~~~---------~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~-~~~ 470 (686)
+|+| +++|++++.|+.|++||+++ ++.+....+...|.+++|+|++ +++++.+|.|++||+.+ ...
T Consensus 108 ~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 108 CKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD 183 (342)
T ss_dssp EEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC
T ss_pred EeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc
Confidence 9998 88999999999999999988 7666666688999999999987 99999999999999987 443
Q ss_pred eeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc------------------------------ce
Q 005646 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN------------------------------VI 520 (686)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~------------------------------~~ 520 (686)
.... ....+...|.+++|+|.++..+++++.|+.|++|+... .+
T Consensus 184 ~~~~------~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (342)
T 1yfq_A 184 NGTI------EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI 257 (342)
T ss_dssp CCEE------EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEE
T ss_pred ccee------eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEE
Confidence 2111 12345578999999984468999999999999988532 35
Q ss_pred eEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 521 GKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 521 ~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+++|++++|++|+.||.|++||+.+++
T Consensus 258 ~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 258 EFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp EECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred EEcCCCCEEEEecCCceEEEEcCccHh
Confidence 688899999999999999999998765
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=257.24 Aligned_cols=265 Identities=12% Similarity=0.059 Sum_probs=201.8
Q ss_pred eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeee
Q 005646 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTE 287 (686)
Q Consensus 208 ~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~ 287 (686)
.+..++..+++|+.|+.|++|++...... ..+. ...|.++.|+|+ +++++.|++|++|+......+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~-------~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~ 110 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTI-------TTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILD 110 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCE-------EEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEE-------EEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEee
Confidence 34467788999999999999998764321 1122 456888889888 99999999999999764221111
Q ss_pred eccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe-ccCCCCeeEEEeeC--
Q 005646 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF-HGHSGEILDLSWSK-- 364 (686)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~-- 364 (686)
+.. .+.+..+ .+|.+.|.+++|+|
T Consensus 111 ~~~-----------------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~ 137 (343)
T 3lrv_A 111 SKT-----------------------------------------------------NKVLREIEVDSANEIIYMYGHNEV 137 (343)
T ss_dssp TTT-----------------------------------------------------CCEEEEEECCCSSCEEEEECCC--
T ss_pred cCC-----------------------------------------------------cceeEEeecCCCCCEEEEEcCCCC
Confidence 100 0112222 36778999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE--EEec-cCCc
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVD-IRQI 438 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~-~~~~ 438 (686)
++ +|++++.|++|++||+.+++++..+. |...|++++|+| ++.+|++|+.||.|++||+++++.+ .+.. |...
T Consensus 138 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~ 216 (343)
T 3lrv_A 138 NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK 216 (343)
T ss_dssp -CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSC
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCC
Confidence 88 99999999999999999999977664 667899999999 9999999999999999999998865 4555 7899
Q ss_pred EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCe--EEEEEeCCCCCeEEEEeC-CCcEEEEe
Q 005646 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI--TGFQFLPQDSSKVMVSCA-DSQVRILQ 515 (686)
Q Consensus 439 V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I--~~l~fsp~~~~~l~~~s~-D~~I~iwd 515 (686)
|++++|+|+|.+|++++ ++.|++||+++.+....... ...|...+ .+++|+| ++.+|++++. |+.|++|+
T Consensus 217 v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 217 IKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT-----YTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp EEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC-----CBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred EEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc-----cccccccccceEEEECC-CCCEEEEecCCCCcEEEEE
Confidence 99999999999999999 55999999988764322110 01122223 4699999 7889999888 99999998
Q ss_pred CCc-----------ceeEcC---CCCEEEEEeCCCcEEEEeCCC
Q 005646 516 GPN-----------VIGKYK---DGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 516 ~~~-----------~~~~~~---dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
..+ .+++.+ +.+.|++++.||.++++-...
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 290 FDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp ECTTTCSEEEEEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EcccccceEecCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 632 355666 889999999999999986544
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=251.27 Aligned_cols=275 Identities=13% Similarity=0.193 Sum_probs=214.6
Q ss_pred cccCccee--eecC---CCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEE
Q 005646 201 DKQGEGER--VRLN---EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVR 275 (686)
Q Consensus 201 ~~~~~~~~--~s~~---~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 275 (686)
.|...+.+ |+++ ++.+++|+.|+.|+||++....... ...+.+|.+.|++++|+|++++|++++.||.|+
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 111 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI-----PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK 111 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE-----EEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee-----EEEeccccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence 45555544 5555 4789999999999999987633222 245778999999999999999999999999999
Q ss_pred EEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCC
Q 005646 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (686)
Q Consensus 276 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 355 (686)
+||+.+++.+ .+.+|..
T Consensus 112 iwd~~~~~~~---------------------------------------------------------------~~~~~~~ 128 (368)
T 3mmy_A 112 MWDLSSNQAI---------------------------------------------------------------QIAQHDA 128 (368)
T ss_dssp EEETTTTEEE---------------------------------------------------------------EEEECSS
T ss_pred EEEcCCCCce---------------------------------------------------------------eeccccC
Confidence 9999876521 2345899
Q ss_pred CeeEEEe--eCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE
Q 005646 356 EILDLSW--SKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 356 ~V~~l~~--s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~ 432 (686)
.|.+++| ++++ +|++++.|++|++||+++++++..+.....+.++.+.+ ..+++++.++.+++|+++.......
T Consensus 129 ~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~ 205 (368)
T 3mmy_A 129 PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFR 205 (368)
T ss_dssp CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEE
T ss_pred ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhh
Confidence 9999999 8888 89999999999999999999999999777888887764 5889999999999999988754422
Q ss_pred e---ccCCcEEEEEEccCCCE----EEEEecCCcEEEEeCCCCee-eeeeeEEeecc------ccCCCCCeEEEEEeCCC
Q 005646 433 V---DIRQIVTAVCYRPDGQG----GIVGSMMGDCRFYNVSDNHL-ELDAEICVHSK------KKAPCKRITGFQFLPQD 498 (686)
Q Consensus 433 ~---~~~~~V~~v~~spdg~~----l~~gs~dg~i~iwd~~~~~~-~~~~~~~~~~~------~~~~~~~I~~l~fsp~~ 498 (686)
. .+...+.++++.+++.. +++++.||.|++||+..... .....+..+.. ...|...|++++|+| +
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~ 284 (368)
T 3mmy_A 206 RIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-V 284 (368)
T ss_dssp ECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-T
T ss_pred hccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-C
Confidence 2 23455677777776655 99999999999999987643 11111111110 112223799999999 7
Q ss_pred CCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 499 SSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 499 ~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.+|++++.|+.|++||..+ .++|+|+|++|++|+.|+..+.|++.+.+
T Consensus 285 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 285 HGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp TCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred CCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence 89999999999999999653 37789999999999999977777765543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=257.71 Aligned_cols=264 Identities=19% Similarity=0.316 Sum_probs=201.0
Q ss_pred eecccCcceeee--cC-CCccceeeccceEEEEEcCCccccc---cccccCceecccCCceEEEEEeeCCC-EEEEEeCC
Q 005646 199 VVDKQGEGERVR--LN-EEDAMFCSKVQRVKVYHCKKRSKEL---SALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDD 271 (686)
Q Consensus 199 ~~~~~~~~~~~s--~~-~~~l~~g~~d~~v~vw~~~~~~~~~---~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~D 271 (686)
...|...+.+++ ++ +..+++++.+|.|+||++....... ........+.+|...|++|+|+|++. +|++|+.|
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 345666665554 43 4588999999999999987531111 11233456789999999999999988 99999999
Q ss_pred CcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEec
Q 005646 272 GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351 (686)
Q Consensus 272 g~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 351 (686)
|.|++|++.++...... ..+...+.
T Consensus 204 g~i~vwd~~~~~~~~~~-------------------------------------------------------~~~~~~~~ 228 (430)
T 2xyi_A 204 HTICLWDINATPKEHRV-------------------------------------------------------IDAKNIFT 228 (430)
T ss_dssp SCEEEEETTSCCBGGGE-------------------------------------------------------EECSEEEC
T ss_pred CeEEEEeCCCCCCCCce-------------------------------------------------------eccceeec
Confidence 99999999764311000 01345667
Q ss_pred cCCCCeeEEEeeCC-C-EEEEEECCCcEEEEECCCC---eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 352 GHSGEILDLSWSKN-N-YLLSASIDKTVRLWRVGND---HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 352 ~h~~~V~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~---~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
+|...|.+++|+|+ + +|++++.|+.|++||++++ +++..+. |...|++++|+|....+|++|+.||.|++||++
T Consensus 229 ~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~ 308 (430)
T 2xyi_A 229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCC
Confidence 89999999999994 4 9999999999999999987 4666665 999999999999333489999999999999999
Q ss_pred CC-c-EEEEeccCCcEEEEEEccCCC-EEEEEecCCcEEEEeCCCCeeeeee------eEEeeccccCCCCCeEEEEEeC
Q 005646 426 SC-H-VVDWVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDA------EICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 426 ~~-~-~~~~~~~~~~V~~v~~spdg~-~l~~gs~dg~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~I~~l~fsp 496 (686)
+. . +..+..|...|++++|+|+++ +|++++.||.|+|||+......... ...+......|...|++++|+|
T Consensus 309 ~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 388 (430)
T 2xyi_A 309 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 388 (430)
T ss_dssp CTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS
T ss_pred CCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC
Confidence 73 3 345667899999999999995 6899999999999999763211100 0011112345778899999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCcceeEcCCCC-EEEEEeCCCcEEEEeCCC
Q 005646 497 QDSSKVMVSCADSQVRILQGPNVIGKYKDGK-HIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 497 ~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~-~l~sgs~Dg~V~iWd~~~ 545 (686)
+++ +|++++.||.|+||++..
T Consensus 389 ----------------------------~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 389 ----------------------------NEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp ----------------------------SSTTEEEEEETTSEEEEEEECH
T ss_pred ----------------------------CCCCEEEEEECCCCEEEeEccc
Confidence 666 788888888888888865
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=265.13 Aligned_cols=277 Identities=11% Similarity=0.094 Sum_probs=211.2
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccc----------------------cccccccCceec-ccCCceEEEEEeeC
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSK----------------------ELSALYKGQEIQ-AHDGSILTMKFSPD 261 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~----------------------~~~~~~~~~~l~-~H~~~I~~l~fspd 261 (686)
...+++++|..+|+++.|++|+ +...... ++........+. .|...|++++|||+
T Consensus 19 ~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPd 96 (588)
T 2j04_A 19 NNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPI 96 (588)
T ss_dssp CCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSS
T ss_pred EEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCC
Confidence 4578899999999999999997 4221110 000011111222 56778888888888
Q ss_pred CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCcccc
Q 005646 262 GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFR 341 (686)
Q Consensus 262 g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (686)
|++||+++.||.|+|||.++ .
T Consensus 97 G~~LAs~s~dg~V~iwd~~~--~--------------------------------------------------------- 117 (588)
T 2j04_A 97 DDWMAVLSNNGNVSVFKDNK--M--------------------------------------------------------- 117 (588)
T ss_dssp SSCEEEEETTSCEEEEETTE--E---------------------------------------------------------
T ss_pred CCEEEEEeCCCcEEEEeCCc--e---------------------------------------------------------
Confidence 88888888888888888432 1
Q ss_pred ccCCCeEEeccCCC-----CeeEEEeeCCC-EEEEEECCCcEEEEECCCCee-------eeEe----e-CCCCeEEEEEe
Q 005646 342 ILEKPLHEFHGHSG-----EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHC-------LRVF----P-HSNYVTCVHFN 403 (686)
Q Consensus 342 ~~~~~~~~l~~h~~-----~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~-------~~~~----~-h~~~V~~v~fs 403 (686)
+..+. |.. .|.+++|||+| +|++|+.||+|+|||+.++.. +.++ . |.+.|.+++|+
T Consensus 118 -----l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS 191 (588)
T 2j04_A 118 -----LTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY 191 (588)
T ss_dssp -----EEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE
T ss_pred -----eeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEc
Confidence 22233 333 59999999999 999999999999999998752 5565 2 77899999999
Q ss_pred ecCCCEEEEEEcCCcEEEEecCCCcEE----EE-eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 404 PVDDNYFISGSIDGKVRIWAVLSCHVV----DW-VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 404 p~~~~~l~sgs~Dg~V~iwd~~~~~~~----~~-~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
| ++ +++++.|++|++||+.++... .+ ..|...|.+++|+ |+.+|+++ +++|++||+.+++....
T Consensus 192 P-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~----- 260 (588)
T 2j04_A 192 E-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL----- 260 (588)
T ss_dssp T-TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE-----
T ss_pred C-Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE-----
Confidence 9 77 889999999999999887742 23 2577899999999 68999887 69999999998775321
Q ss_pred eccccCCCCCeEEEEE--eCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCcccccc
Q 005646 479 HSKKKAPCKRITGFQF--LPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKT 556 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~f--sp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~ 556 (686)
..+|...|..++| +| ++..+++++.||. ++|... .+++.||+..+++. |+++++|+...+.
T Consensus 261 ---~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~~d-~~~~spd~~l~a~~--d~~v~lW~~~g~~--------- 323 (588)
T 2j04_A 261 ---KTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLLED-ELHVTADNIIAPYL--EKKFKKWSTIWNE--------- 323 (588)
T ss_dssp ---ECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEESS-SEEEECCCSSHHHH--HHHHHHTTTTTTS---------
T ss_pred ---EcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEeec-cEEECCCceEEEEc--CCEEEEEECCCCc---------
Confidence 2258889999999 98 7889999999999 999977 46699999999886 9999999986543
Q ss_pred ccccccccCCcEEEecCCCC
Q 005646 557 IRSLERFTTNASIAIPWCGL 576 (686)
Q Consensus 557 ~~~~~~~~~~~~v~~s~~g~ 576 (686)
...++.-.....++++++|.
T Consensus 324 l~~~~~~~~I~~va~SPdG~ 343 (588)
T 2j04_A 324 FNNYETTLVIHGISLSPDGY 343 (588)
T ss_dssp SSSSCCEEEEEEEEECTTSS
T ss_pred eeeeccceEEEEEEECCCCC
Confidence 22333411256788999975
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-28 Score=261.44 Aligned_cols=245 Identities=13% Similarity=0.108 Sum_probs=185.8
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
-...|.+++|+|||++|||++.|++|+ |...++. +..+.....++.|.+..
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg------------------------ 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLE------------------------ 64 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCC------------------------
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCC------------------------
Confidence 347899999999999999999999999 6555442 33444444444444433
Q ss_pred CceEEEeCCcccccc---CCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCC-----CeEE
Q 005646 329 ESACVVFPPKVFRIL---EKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSN-----YVTC 399 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~---~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~-----~V~~ 399 (686)
..+.+++. ...+..+ .|...|.+++|+|+| +||+++.||+|++||... ++..+.|.. .|.+
T Consensus 65 -------~~~~~~~~~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~s 134 (588)
T 2j04_A 65 -------FENKLDFELAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHC 134 (588)
T ss_dssp -------CCCTTTTSCCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEE
T ss_pred -------CcceEEEEeCCCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEE
Confidence 01111211 1111222 468899999999999 999999999999999644 666666554 5999
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCcE-------E-EE----eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHV-------V-DW----VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~-------~-~~----~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
++|+| ++++|++|+.||+|+|||+.++.. + .+ .+|...|.+++|+||| +++++.|++|++||+.+
T Consensus 135 vafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~ 211 (588)
T 2j04_A 135 FEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSA 211 (588)
T ss_dssp EEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCS
T ss_pred EEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCC
Confidence 99999 999999999999999999998853 3 33 4566799999999999 88889999999999988
Q ss_pred CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeE--cCCCCEEE
Q 005646 468 NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGK--YKDGKHIV 530 (686)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~--~~dg~~l~ 530 (686)
+...... ..+ ...|...|.+++|+ +..|++++ +++|++||..+ .+++ +||++.|+
T Consensus 212 ~~~~~~~-~tL---~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La 283 (588)
T 2j04_A 212 SSHQPVS-RMI---QNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILL 283 (588)
T ss_dssp SSSCCCE-EEE---ECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEE
T ss_pred Cccccce-eee---cccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEE
Confidence 7632100 001 12466789999999 37888887 69999999653 2577 89999999
Q ss_pred EEeCCCcEEEEeCC
Q 005646 531 SAGEDSNVYMWNCI 544 (686)
Q Consensus 531 sgs~Dg~V~iWd~~ 544 (686)
++++||+ ++|.++
T Consensus 284 ~a~edG~-klw~~d 296 (588)
T 2j04_A 284 MSNKTSY-KVLLED 296 (588)
T ss_dssp ECSSCEE-EEEESS
T ss_pred EEcCCCC-EEEeec
Confidence 9999999 999987
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-27 Score=255.00 Aligned_cols=235 Identities=13% Similarity=0.082 Sum_probs=185.5
Q ss_pred cccCCceEEEEEeeCCCEE-EEEeCCCcEEEEEee--cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 247 QAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVV--EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 247 ~~H~~~I~~l~fspdg~~L-asgs~Dg~I~vWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
.+|.+.|++++|+|+|++| ++|+.||.|+|||+. +++.+
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~-------------------------------------- 140 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL-------------------------------------- 140 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE--------------------------------------
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee--------------------------------------
Confidence 4677789999999999996 999999999999998 55422
Q ss_pred eeccCCceEEEeCCccccccCCCeEEec--cCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeee----Eee-CCC
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFH--GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLR----VFP-HSN 395 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~----~~~-h~~ 395 (686)
..+. .|...|.+++|+|++ +|++++.|+.|++|++.+++... .+. |..
T Consensus 141 ------------------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~ 196 (450)
T 2vdu_B 141 ------------------------KLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVS 196 (450)
T ss_dssp ------------------------EEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSS
T ss_pred ------------------------eeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccC
Confidence 2222 577899999999999 99999999999999998887653 444 999
Q ss_pred CeEEEEEeecC---CCEEEEEEcCCcEEEEecCCCcEEEE--eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 396 YVTCVHFNPVD---DNYFISGSIDGKVRIWAVLSCHVVDW--VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 396 ~V~~v~fsp~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~--~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
.|++++|+| + +++|++|+.|++|++||+++++.+.. .+|...|++++|+ ++++|++++.|+.|++||+.++++
T Consensus 197 ~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 197 MLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN 274 (450)
T ss_dssp CEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE
T ss_pred ceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence 999999999 8 88999999999999999999887643 3688999999999 999999999999999999998876
Q ss_pred eeeeeEEe--e---------------ccccCCCCCeEEEEEeCCCCCeEEEEe-CCCcEEEEeC--Cc------------
Q 005646 471 ELDAEICV--H---------------SKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQG--PN------------ 518 (686)
Q Consensus 471 ~~~~~~~~--~---------------~~~~~~~~~I~~l~fsp~~~~~l~~~s-~D~~I~iwd~--~~------------ 518 (686)
........ . .........|.++.|+| ++.+|++++ .|+.|++|+. .+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~ 353 (450)
T 2vdu_B 275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF 353 (450)
T ss_dssp EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC
T ss_pred eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc
Confidence 54322100 0 00002345699999999 788888888 8999999998 21
Q ss_pred -----ceeEcCCCCEEEEEeC------CCcEEEEeCCCC
Q 005646 519 -----VIGKYKDGKHIVSAGE------DSNVYMWNCIGH 546 (686)
Q Consensus 519 -----~~~~~~dg~~l~sgs~------Dg~V~iWd~~~~ 546 (686)
.++++|++.++++++. +..|.||.++..
T Consensus 354 ~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 354 PYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp SSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 2556775444444443 556888887654
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=257.35 Aligned_cols=224 Identities=18% Similarity=0.207 Sum_probs=149.5
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
|...+....+++++.+||+|+.|++|+|||+.+++.....
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~---------------------------------------- 127 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQH---------------------------------------- 127 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEE----------------------------------------
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceee----------------------------------------
Confidence 3444444455567789999999999999999887633211
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC--------CC-EEEEEECCCcEEEEECCCCeeeeE-eeCCCCeE
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK--------NN-YLLSASIDKTVRLWRVGNDHCLRV-FPHSNYVT 398 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--------~~-~L~s~s~Dg~V~iWd~~~~~~~~~-~~h~~~V~ 398 (686)
++..+.||.+.|.+++|+| ++ +|++++.|++|+|||+.++.++.. +.|...|.
T Consensus 128 -----------------~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~ 190 (393)
T 4gq1_A 128 -----------------VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGI 190 (393)
T ss_dssp -----------------EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEE
T ss_pred -----------------eecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcE
Confidence 2334578999999999997 66 999999999999999988776554 45999999
Q ss_pred EEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE--------------------------EeccCCcEEEEEEc-cCCCEE
Q 005646 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD--------------------------WVDIRQIVTAVCYR-PDGQGG 451 (686)
Q Consensus 399 ~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~--------------------------~~~~~~~V~~v~~s-pdg~~l 451 (686)
+++|+|.+.++|++|+.||+|++||+++++... ...|...+.++.|. |||+.+
T Consensus 191 ~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l 270 (393)
T 4gq1_A 191 SVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGI 270 (393)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEE
T ss_pred EEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEE
Confidence 999999444689999999999999998875321 12455678888886 799999
Q ss_pred EEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcC--CCCEE
Q 005646 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK--DGKHI 529 (686)
Q Consensus 452 ~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~--dg~~l 529 (686)
++++.|+++++||+...+.... ...|...+..+.+.| +...+..... .....+++ ++.++
T Consensus 271 ~s~s~d~~i~vwd~~~~~~~~~--------l~~~~~~~~~~~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~ 332 (393)
T 4gq1_A 271 LAMCKSGAWLRWNLFANNDYNE--------ISDSTMKLGPKNLLP-NVQGISLFPS---------LLGACPHPRYMDYFA 332 (393)
T ss_dssp EEECTTSEEEEEEC---------------------------CCSC-SEEEECSSCC---------SSCCEECSSCTTEEE
T ss_pred EEEeCCCCEEEEECccCCCCce--------EeeecCccccEEEcc-ccccccccCc---------ceeEEEccCCCCEEE
Confidence 9999999999999987654321 122334455666666 2211111111 11122333 66788
Q ss_pred EEEeCCCcEEEEeCCCCC
Q 005646 530 VSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 530 ~sgs~Dg~V~iWd~~~~~ 547 (686)
++|+.||+|+|||+.++.
T Consensus 333 ~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 333 TAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp EEETTTTEEEEEETTCTT
T ss_pred EEECCCCEEEEEECCCCc
Confidence 889999999999998765
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-27 Score=254.92 Aligned_cols=268 Identities=20% Similarity=0.293 Sum_probs=207.5
Q ss_pred cccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
.+|...|+++.| ++++|++|+.||.|++||+.+++
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~------------------------------------------- 164 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE------------------------------------------- 164 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-------------------------------------------
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe-------------------------------------------
Confidence 357778999887 78999999999999999997765
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEee
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNP 404 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp 404 (686)
.+..+.+|.+.|.+++| ++ +|++|+.||+|++||+.+++++..+. |...|.+++|++
T Consensus 165 -------------------~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~ 223 (435)
T 1p22_A 165 -------------------CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN 223 (435)
T ss_dssp -------------------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT
T ss_pred -------------------EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC
Confidence 34556789999999999 45 99999999999999999999998887 999999999964
Q ss_pred cCCCEEEEEEcCCcEEEEecCCCcEE----EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeec
Q 005646 405 VDDNYFISGSIDGKVRIWAVLSCHVV----DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (686)
Q Consensus 405 ~~~~~l~sgs~Dg~V~iwd~~~~~~~----~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~ 480 (686)
++|++|+.||.|++||+.++... ....|...|++++| +++++++|+.||.|++||+.+++....
T Consensus 224 ---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~------- 291 (435)
T 1p22_A 224 ---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRT------- 291 (435)
T ss_dssp ---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEE-------
T ss_pred ---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEE-------
Confidence 69999999999999999987643 45578889999999 788999999999999999998765432
Q ss_pred cccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-------------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-------------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 481 ~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~-------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
...|...|.++.|.+ ..+++++.|+.|++||..+. .+...++++|++|+.||.|+|||+.++.
T Consensus 292 -~~~~~~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 292 -LNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp -EECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred -EcCCCCcEEEEEeCC---CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCC
Confidence 234667899999954 79999999999999997642 1222389999999999999999997654
Q ss_pred CCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCc
Q 005646 548 EPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEK 627 (686)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~ 627 (686)
.+..... ...+..+..|...+.++..+ +..+++++.|+.+.+|+...
T Consensus 368 ~~~~~~~-----------------------------~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 368 DPRAPAG-----------------------------TLCLRTLVEHSGRVFRLQFD----EFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp STTSCTT-----------------------------TTEEEEECCCSSCCCCEEEC----SSCEEECCSSSEEEEEC---
T ss_pred Ccccccc-----------------------------chheeeccCCCCCeEEEEeC----CCEEEEEeCCCEEEEEECCC
Confidence 2111000 11122233333333333334 45677888999999999665
Q ss_pred CC
Q 005646 628 LP 629 (686)
Q Consensus 628 ~~ 629 (686)
.+
T Consensus 415 ~~ 416 (435)
T 1p22_A 415 DP 416 (435)
T ss_dssp --
T ss_pred CC
Confidence 54
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=249.16 Aligned_cols=229 Identities=17% Similarity=0.229 Sum_probs=187.8
Q ss_pred ceEEEEEeeCCC-EEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCc
Q 005646 252 SILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (686)
Q Consensus 252 ~I~~l~fspdg~-~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (686)
....++++|+.. ++++++.||.|+||++......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~--------------------------------------------- 70 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV--------------------------------------------- 70 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC---------------------------------------------
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC---------------------------------------------
Confidence 344688888764 3446789999999998654311
Q ss_pred eEEEeCCccccccCCCeEEeccCCCCeeEEEeeC-CC-EEEEEECCCcEEEEECCCC-------eeeeEee-CCCCeEEE
Q 005646 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGND-------HCLRVFP-HSNYVTCV 400 (686)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWd~~~~-------~~~~~~~-h~~~V~~v 400 (686)
...+..+.+|.+.|.+++|+| ++ +|++++.|++|+|||+.++ +++..+. |...|+++
T Consensus 71 -------------~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 137 (402)
T 2aq5_A 71 -------------DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137 (402)
T ss_dssp -------------CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEE
T ss_pred -------------CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEE
Confidence 023445678999999999999 77 9999999999999999987 5566666 99999999
Q ss_pred EEeecCC-CEEEEEEcCCcEEEEecCCCcEEEEe---ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeE
Q 005646 401 HFNPVDD-NYFISGSIDGKVRIWAVLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (686)
Q Consensus 401 ~fsp~~~-~~l~sgs~Dg~V~iwd~~~~~~~~~~---~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~ 476 (686)
+|+| ++ ++|++|+.||+|++||+++++.+... .|...|++++|+|+|++|++++.||.|++||+++++.....
T Consensus 138 ~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-- 214 (402)
T 2aq5_A 138 AWHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEK-- 214 (402)
T ss_dssp EECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE--
T ss_pred EECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeee--
Confidence 9999 65 79999999999999999999887554 58899999999999999999999999999999987754321
Q ss_pred EeeccccCCCC-CeEEEEEeCCCCCeEEEE---eCCCcEEEEeCCc-----------------ceeEcCCCCEEEE-EeC
Q 005646 477 CVHSKKKAPCK-RITGFQFLPQDSSKVMVS---CADSQVRILQGPN-----------------VIGKYKDGKHIVS-AGE 534 (686)
Q Consensus 477 ~~~~~~~~~~~-~I~~l~fsp~~~~~l~~~---s~D~~I~iwd~~~-----------------~~~~~~dg~~l~s-gs~ 534 (686)
...|.. .+..+.|+| ++.+|+++ +.|+.|++||..+ .++++|++++|++ |+.
T Consensus 215 -----~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~ 288 (402)
T 2aq5_A 215 -----DRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG 288 (402)
T ss_dssp -----ECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETT
T ss_pred -----ccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcC
Confidence 123433 489999999 78888888 7999999999653 2567889999975 557
Q ss_pred CCcEEEEeCCCCC
Q 005646 535 DSNVYMWNCIGHE 547 (686)
Q Consensus 535 Dg~V~iWd~~~~~ 547 (686)
||.|++|++.+++
T Consensus 289 dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 289 DSSIRYFEITSEA 301 (402)
T ss_dssp CSCEEEEEECSST
T ss_pred CCeEEEEEecCCC
Confidence 9999999998865
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=249.24 Aligned_cols=265 Identities=11% Similarity=0.088 Sum_probs=216.4
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
...+++++..+++++.++.|++|+...... ........+.+|.+.|++++|+|+++++++++.|+.|++||+.+++.
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~- 203 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQT--VRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY- 203 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTTCCE--EEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE-
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCCCeE--eeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE-
Confidence 356667556777788889999999875432 22222235678999999999999999999999999999999977652
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
+..+..|...+.+++|+|+
T Consensus 204 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 222 (433)
T 3bws_A 204 -------------------------------------------------------------KATVDLTGKWSKILLYDPI 222 (433)
T ss_dssp -------------------------------------------------------------EEEEECSSSSEEEEEEETT
T ss_pred -------------------------------------------------------------EEEEcCCCCCeeEEEEcCC
Confidence 3344568889999999999
Q ss_pred C-EE-EEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEE--------cCCcEEEEecCCCcEEEEecc
Q 005646 366 N-YL-LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS--------IDGKVRIWAVLSCHVVDWVDI 435 (686)
Q Consensus 366 ~-~L-~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs--------~Dg~V~iwd~~~~~~~~~~~~ 435 (686)
+ +| ++++.|+.|++||+.+++.+..+.+...+.+++|+| ++++|++++ .||.|++||+.+++.+....+
T Consensus 223 ~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~ 301 (433)
T 3bws_A 223 RDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP 301 (433)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC
Confidence 9 66 455589999999999999998888777899999999 899999888 488999999999998888877
Q ss_pred CCcEEEEEEccCCCEE-EEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC-------
Q 005646 436 RQIVTAVCYRPDGQGG-IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA------- 507 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l-~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~------- 507 (686)
...+.+++|+|+++.+ ++++.++.|++||+.+++..... .+...+.+++|+| ++..+++++.
T Consensus 302 ~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~---------~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~ 371 (433)
T 3bws_A 302 PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI---------PVFDKPNTIALSP-DGKYLYVSCRGPNHPTE 371 (433)
T ss_dssp EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE---------ECSSSEEEEEECT-TSSEEEEEECCCCCTTT
T ss_pred CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe---------cCCCCCCeEEEcC-CCCEEEEEecCCCcccc
Confidence 7889999999999755 55688999999999987754321 1346699999999 7777777776
Q ss_pred --------CCcEEEEeCCc--------------ceeEcCCCCEEEEEeC-CCcEEEEeCCC
Q 005646 508 --------DSQVRILQGPN--------------VIGKYKDGKHIVSAGE-DSNVYMWNCIG 545 (686)
Q Consensus 508 --------D~~I~iwd~~~--------------~~~~~~dg~~l~sgs~-Dg~V~iWd~~~ 545 (686)
||.|++||..+ .++++|+|++|++++. |+.|++|+++.
T Consensus 372 ~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 372 GYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 57999999753 3678899999998875 99999999864
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-26 Score=244.05 Aligned_cols=251 Identities=12% Similarity=0.149 Sum_probs=204.1
Q ss_pred ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEE-EEEeCCCcEEEEEeecCeeeeeeccCCC
Q 005646 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
.+++++.++.|++|+...... .+.+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~-------~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~------ 69 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKV-------TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT------ 69 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE------
T ss_pred EEEEcCCCCEEEEEECCCCeE-------EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE------
Confidence 467788999999999865432 23455554 58999999999987 6777999999999988764322
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE-EE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SA 371 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~-s~ 371 (686)
+..| ..+.+++|+|++ +|+ ++
T Consensus 70 --------------------------------------------------------~~~~-~~v~~~~~spdg~~l~~~~ 92 (391)
T 1l0q_A 70 --------------------------------------------------------VPAG-SSPQGVAVSPDGKQVYVTN 92 (391)
T ss_dssp --------------------------------------------------------EECS-SSEEEEEECTTSSEEEEEE
T ss_pred --------------------------------------------------------EECC-CCccceEECCCCCEEEEEE
Confidence 2223 389999999999 664 55
Q ss_pred ECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEE-EEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCE
Q 005646 372 SIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF-ISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG 450 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~ 450 (686)
+.++.|++||+.+++.+..+.+...+.+++|+| ++++| ++++.|+.|++||+.+++.+........+..++|+|+|+.
T Consensus 93 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~ 171 (391)
T 1l0q_A 93 MASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTK 171 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSE
T ss_pred CCCCEEEEEECCCCeEEEEEeCCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCE
Confidence 567999999999999999998888899999999 88866 7888899999999999998877777778899999999998
Q ss_pred E-EEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe---CCCcEEEEeCCc--------
Q 005646 451 G-IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC---ADSQVRILQGPN-------- 518 (686)
Q Consensus 451 l-~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s---~D~~I~iwd~~~-------- 518 (686)
+ ++++.++.|++||+.+++..... .+...+.+++|+| ++..+++++ .++.|++||..+
T Consensus 172 l~~~~~~~~~v~~~d~~~~~~~~~~---------~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~ 241 (391)
T 1l0q_A 172 VYVANFDSMSISVIDTVTNSVIDTV---------KVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIP 241 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEE---------ECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEE---------ecCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeEEEEEe
Confidence 7 56778999999999987654321 1235689999999 777777777 789999999753
Q ss_pred ------ceeEcCCCCEE-EEEeCCCcEEEEeCCCCC
Q 005646 519 ------VIGKYKDGKHI-VSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 ------~~~~~~dg~~l-~sgs~Dg~V~iWd~~~~~ 547 (686)
.++++|++++| ++++.|+.|++||+.+++
T Consensus 242 ~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 242 VGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 36788999988 677899999999998865
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-27 Score=247.14 Aligned_cols=266 Identities=11% Similarity=0.100 Sum_probs=190.1
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+++.+|...|++++|+|||++||+|+.|+ ++||++.+++........ ....+.+.. .....+
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~-------------~~~~~~-- 74 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLH-------------RTNYVA-- 74 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECT-------------TSSEEE--
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcC-------------CCCEEE--
Confidence 34578999999999999999999998775 789999877655443322 122222211 111110
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCC-eeeeEeeCCCCeEEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHF 402 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~-~~~~~~~h~~~V~~v~f 402 (686)
+..+.+..+.+|+ ...........|...|.++++++ ..++.+ .|+.|++||+.++ +.+..+.. ....+++
T Consensus 75 ~~~~~d~~v~iWd-----~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~ 145 (355)
T 3vu4_A 75 FVTGVKEVVHIWD-----DVKKQDVSRIKVDAPVKDLFLSR-EFIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEF 145 (355)
T ss_dssp EECSSTTEEEEEE-----TTTTEEEEEEECSSCEEEEEECS-SEEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEE
T ss_pred EEECCccEEEEEE-----CCCCcEEEEEECCCceEEEEEcC-CEEEEE-EcCEEEEEECCCCceeeEEecc--CCceEEE
Confidence 1112222333333 22345555567788888888853 555554 4778999998887 66666554 4455666
Q ss_pred eecCCCEEEE--EEcCCcEEEEecCCCc-----------------EEEEeccCCcEEEEEEccCCCEEEEEecCCc-EEE
Q 005646 403 NPVDDNYFIS--GSIDGKVRIWAVLSCH-----------------VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGD-CRF 462 (686)
Q Consensus 403 sp~~~~~l~s--gs~Dg~V~iwd~~~~~-----------------~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~-i~i 462 (686)
+| .+++. |+.||.|++||+.++. ...+..|...|++++|+|+|++|++|+.||+ |++
T Consensus 146 s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 146 SN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRV 222 (355)
T ss_dssp ET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred Ec---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence 65 56665 5789999999999865 5567789999999999999999999999998 999
Q ss_pred EeCCCCeeeeeeeEEeeccccC-CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC------------------------
Q 005646 463 YNVSDNHLELDAEICVHSKKKA-PCKRITGFQFLPQDSSKVMVSCADSQVRILQGP------------------------ 517 (686)
Q Consensus 463 wd~~~~~~~~~~~~~~~~~~~~-~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~------------------------ 517 (686)
||+.+++..... ..+ |...|++++|+| ++.+|++++.|+.|++||..
T Consensus 223 wd~~~~~~~~~~-------~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (355)
T 3vu4_A 223 FKTEDGVLVREF-------RRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWS 294 (355)
T ss_dssp EETTTCCEEEEE-------ECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSC
T ss_pred EECCCCcEEEEE-------EcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccc
Confidence 999987754321 212 678899999999 88999999999999999964
Q ss_pred --------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 518 --------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 518 --------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..++|++|+++|++++.||.+++|++..++
T Consensus 295 ~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 295 LCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred eeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 335788999999999999999999998755
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-26 Score=248.83 Aligned_cols=216 Identities=22% Similarity=0.312 Sum_probs=174.1
Q ss_pred ceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 244 QEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
....+|.+.|++++|+|+ +.+||+++.||.|+||++.+.......
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---------------------------------- 167 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---------------------------------- 167 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT----------------------------------
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc----------------------------------
Confidence 345689999999999997 789999999999999999763210000
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCee-------eeEe-e
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHC-------LRVF-P 392 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~-------~~~~-~ 392 (686)
.....++..+.+|...|.+++|+|++ +|++++.||+|++||+.++.. ...+ .
T Consensus 168 ------------------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 229 (430)
T 2xyi_A 168 ------------------SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG 229 (430)
T ss_dssp ------------------TCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC
T ss_pred ------------------cccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC
Confidence 00014567788999999999999987 899999999999999987432 3344 3
Q ss_pred CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC---cE-EEEeccCCcEEEEEEccCCC-EEEEEecCCcEEEEeCCC
Q 005646 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC---HV-VDWVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 393 h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~---~~-~~~~~~~~~V~~v~~spdg~-~l~~gs~dg~i~iwd~~~ 467 (686)
|...|++++|+|.++.+|++++.||.|++||++++ +. .....|...|++++|+|+++ ++++|+.||.|++||++.
T Consensus 230 h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence 99999999999977889999999999999999986 23 35557889999999999997 688999999999999987
Q ss_pred CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCC-CEEEEEeCCCcEEEEeCCCC
Q 005646 468 NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDG-KHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg-~~l~sgs~Dg~V~iWd~~~~ 546 (686)
...... ....|...|++++|+| ++ .+|++++.||.|+|||+...
T Consensus 310 ~~~~~~-------~~~~h~~~v~~i~~sp----------------------------~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 310 LKLKLH-------SFESHKDEIFQVQWSP----------------------------HNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp TTSCSE-------EEECCSSCEEEEEECS----------------------------SCTTEEEEEETTSCCEEEEGGGT
T ss_pred CCCCeE-------EeecCCCCEEEEEECC----------------------------CCCCEEEEEeCCCcEEEEeCCCC
Confidence 432111 1234668899999999 55 57999999999999999764
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=254.19 Aligned_cols=236 Identities=14% Similarity=0.142 Sum_probs=171.2
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee--------CCCEEEEEeCCCcEEEEE
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--------DGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--------dg~~Lasgs~Dg~I~vWd 278 (686)
..+.+++..+++++.|++|+||+........ ......+.+|.+.|++++|+| ||++|||||.|++|+|||
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~--~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIIT--QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEE--EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccce--eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 4456667789999999999999987653321 222345789999999999998 899999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.++. ++..+.+|...|.
T Consensus 173 ~~~~~--------------------------------------------------------------~~~~~~~~~~~v~ 190 (393)
T 4gq1_A 173 LTDEG--------------------------------------------------------------PILAGYPLSSPGI 190 (393)
T ss_dssp EETTE--------------------------------------------------------------EEEEEEECSSCEE
T ss_pred CCCCc--------------------------------------------------------------eeeeecCCCCCcE
Confidence 98765 2344456889999
Q ss_pred EEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEe--------------------------eCCCCeEEEEEeecCCCEE
Q 005646 359 DLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVF--------------------------PHSNYVTCVHFNPVDDNYF 410 (686)
Q Consensus 359 ~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~--------------------------~h~~~V~~v~fsp~~~~~l 410 (686)
+++|+|++ +|++++.|++|++||+.+++..... .|...|.++.|++.++..|
T Consensus 191 ~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l 270 (393)
T 4gq1_A 191 SVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGI 270 (393)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEE
T ss_pred EEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEE
Confidence 99999987 7999999999999999887644322 2677899999985599999
Q ss_pred EEEEcCCcEEEEecCCCcEEE-EeccCCcEE------------------EEEEcc--CCCEEEEEecCCcEEEEeCCCCe
Q 005646 411 ISGSIDGKVRIWAVLSCHVVD-WVDIRQIVT------------------AVCYRP--DGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 411 ~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~------------------~v~~sp--dg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
++++.|+++++||+.+++... +..+...+. ...|+| ++.++++|+.||+|++||+.++.
T Consensus 271 ~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 271 LAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp EEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT
T ss_pred EEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc
Confidence 999999999999998765432 112222222 233444 44467778899999999998876
Q ss_pred eeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 470 LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
.... ...|..+|.+++|+| ||++||++++|| +.+|.+
T Consensus 351 ~~~~--------~~~~~~~V~svafsp----------------------------dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 351 SNSI--------PIQLGMPIVDFCWHQ----------------------------DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CCEE--------EEECSSCEEEEEECT----------------------------TSSEEEEEESSE-EEEEEE
T ss_pred EEEE--------ecCCCCcEEEEEEcC----------------------------CCCEEEEEeCCC-eEEEEE
Confidence 5432 123557899999999 888888887665 555544
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-27 Score=271.93 Aligned_cols=250 Identities=16% Similarity=0.237 Sum_probs=203.7
Q ss_pred cccCcce--eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC--CCEEEEEeCCCcEEE
Q 005646 201 DKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD--GQYLASAGDDGVVRL 276 (686)
Q Consensus 201 ~~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~I~v 276 (686)
.|...+. .|+++++.+++|+.||.|+||++..... .....+.+|.++|++++|+|+ +++|++|+.||+|++
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-----~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-----EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-----ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 4555554 4567788999999999999999864322 223567889999999999998 999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.+++. ..+..+.+|...
T Consensus 82 wd~~~~~~------------------------------------------------------------~~~~~~~~h~~~ 101 (753)
T 3jro_A 82 WKEENGRW------------------------------------------------------------SQIAVHAVHSAS 101 (753)
T ss_dssp EEEETTEE------------------------------------------------------------EEEEEECCCSSC
T ss_pred EECCCCcc------------------------------------------------------------cccccccCCCCC
Confidence 99987641 134556679999
Q ss_pred eeEEEeeCC--C-EEEEEECCCcEEEEECCCCeee--eEe-eCCCCeEEEEEeec------------CCCEEEEEEcCCc
Q 005646 357 ILDLSWSKN--N-YLLSASIDKTVRLWRVGNDHCL--RVF-PHSNYVTCVHFNPV------------DDNYFISGSIDGK 418 (686)
Q Consensus 357 V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~~~--~~~-~h~~~V~~v~fsp~------------~~~~l~sgs~Dg~ 418 (686)
|.+++|+|+ + +|++++.||+|++||+.++... ..+ .|...|++++|+|. ++.+|++|+.||+
T Consensus 102 V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~ 181 (753)
T 3jro_A 102 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181 (753)
T ss_dssp EEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC
T ss_pred eEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe
Confidence 999999998 7 9999999999999999887432 223 39999999999994 4899999999999
Q ss_pred EEEEecCCCc----EE-EEeccCCcEEEEEEccC---CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeE
Q 005646 419 VRIWAVLSCH----VV-DWVDIRQIVTAVCYRPD---GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (686)
Q Consensus 419 V~iwd~~~~~----~~-~~~~~~~~V~~v~~spd---g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~ 490 (686)
|++||++++. +. .+..|...|++++|+|+ ++++++|+.||.|++||+.++...... .......|...|+
T Consensus 182 I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~---~~~~~~~~~~~v~ 258 (753)
T 3jro_A 182 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK---TLLKEEKFPDVLW 258 (753)
T ss_dssp EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBC---CBSSSSCCSSCCC
T ss_pred EEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCccee---EEeccCCCCCceE
Confidence 9999998763 32 45578899999999999 999999999999999999876422111 1112345778899
Q ss_pred EEEEeCCCCCeEEEEeCCCcEEEEeCCcc
Q 005646 491 GFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (686)
Q Consensus 491 ~l~fsp~~~~~l~~~s~D~~I~iwd~~~~ 519 (686)
+++|+| ++..+++++.||.|++|+....
T Consensus 259 ~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 259 RASWSL-SGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CEEECT-TTCCEEEECSSSCEECCBCCSS
T ss_pred EEEEcC-CCCEEEEEcCCCEEEEEecCCC
Confidence 999999 8899999999999999998753
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=243.96 Aligned_cols=218 Identities=14% Similarity=0.103 Sum_probs=175.2
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEe
Q 005646 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVF 335 (686)
Q Consensus 256 l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (686)
..+.+++.+|+||+.||+|++||+.+++.+..+.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---------------------------------------------- 75 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---------------------------------------------- 75 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----------------------------------------------
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----------------------------------------------
Confidence 3455688899999999999999998876433221
Q ss_pred CCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECC---------CCeeeeEee--CCCCeEEEEEee
Q 005646 336 PPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVG---------NDHCLRVFP--HSNYVTCVHFNP 404 (686)
Q Consensus 336 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~---------~~~~~~~~~--h~~~V~~v~fsp 404 (686)
...|.++.|+|+ +++++.|++|++|+.. +++.+..+. |...|.+++|+|
T Consensus 76 ------------------~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 135 (343)
T 3lrv_A 76 ------------------TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHN 135 (343)
T ss_dssp ------------------EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC
T ss_pred ------------------cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCC
Confidence 245666677777 8999999999999665 555555554 678899999998
Q ss_pred -cCCCEEEEEEcCCcEEEEecCCCcEEEEe--ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 405 -VDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 405 -~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
.++++|++|+.||+|++||+++++.+... .+...+++++|+|+|++|++|+.||.|++||+++++.... . .
T Consensus 136 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~---~---~ 209 (343)
T 3lrv_A 136 EVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASS---R---F 209 (343)
T ss_dssp ---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCE---E---C
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCcc---E---E
Confidence 35789999999999999999999887544 3455799999999999999999999999999998764310 0 1
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc--------------------ceeEcCCCCEEEEEeC-CCcEEE
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--------------------VIGKYKDGKHIVSAGE-DSNVYM 540 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~--------------------~~~~~~dg~~l~sgs~-Dg~V~i 540 (686)
...|...|++++|+| ++.+|++++ |+.|++||..+ .++|+|+|++|++++. |+.|+|
T Consensus 210 ~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v 287 (343)
T 3lrv_A 210 PVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTI 287 (343)
T ss_dssp CCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEE
Confidence 123778999999999 788999999 55999999642 2788999999999998 999999
Q ss_pred EeCCCCC
Q 005646 541 WNCIGHE 547 (686)
Q Consensus 541 Wd~~~~~ 547 (686)
|++....
T Consensus 288 ~~~~~~~ 294 (343)
T 3lrv_A 288 YKFDKKT 294 (343)
T ss_dssp EEECTTT
T ss_pred EEEcccc
Confidence 9997654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=243.97 Aligned_cols=259 Identities=10% Similarity=0.071 Sum_probs=199.2
Q ss_pred eeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcc
Q 005646 218 FCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSC 297 (686)
Q Consensus 218 ~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~ 297 (686)
.++.++.+.||.++.....+ .....+..| ..+.+++|+|++.++++++.|+.|++||+.+++....+.
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~---~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-------- 161 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITH---RFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSP-------- 161 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSE---EEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECC--------
T ss_pred cccCCCceEEEEECCCCCcc---eEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecC--------
Confidence 45667766677665422111 112234444 346699999988888888899999999998876432211
Q ss_pred eEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCc
Q 005646 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKT 376 (686)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~ 376 (686)
...+.+|...|.+++|++++ ++++++.|+.
T Consensus 162 -------------------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 162 -------------------------------------------------PEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp -------------------------------------------------CHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred -------------------------------------------------cccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 11235788999999999999 8899999999
Q ss_pred EEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEE-EEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEE
Q 005646 377 VRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFI-SGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG 454 (686)
Q Consensus 377 V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~-sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~g 454 (686)
|++||+.+++++..+. |...+.+++|+| ++++++ +++.|+.|++||+++++.+........+.+++|+|+|+.++++
T Consensus 193 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 193 VHVFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEE
T ss_pred EEEEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEE
Confidence 9999999999988887 889999999999 888775 5558999999999999988877777889999999999999998
Q ss_pred e--------cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc--------
Q 005646 455 S--------MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-------- 518 (686)
Q Consensus 455 s--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-------- 518 (686)
+ .||.|++||+.+++...... +...+.+++|+|++..++++++.|+.|++||..+
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~ 342 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKLIDTIG---------PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP 342 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEEEEEEE---------EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ECCCCccccCCCeEEEEECCCCcEEeecc---------CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec
Confidence 8 48899999999886543221 1235889999994434566678899999999653
Q ss_pred ------ceeEcCCCCEEEEEeC---------------CCcEEEEeCCCCC
Q 005646 519 ------VIGKYKDGKHIVSAGE---------------DSNVYMWNCIGHE 547 (686)
Q Consensus 519 ------~~~~~~dg~~l~sgs~---------------Dg~V~iWd~~~~~ 547 (686)
.++++|+|++|++++. ||.|++||+.+++
T Consensus 343 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 343 VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 3667889988888876 4688888876643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=244.52 Aligned_cols=275 Identities=12% Similarity=0.007 Sum_probs=191.6
Q ss_pred CCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe---eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE---RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
..+|.+++|+|+|++|+++ .++.|++||+.+++ .+..+..+........+................... ..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---- 77 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKK-LK---- 77 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccc-cc----
Confidence 3578999999999977766 46899999999998 555554332100000000000000000000000000 00
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EE-EEEECCCcEEEEECC--CCeeeeEee---CCCCeEE
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDKTVRLWRVG--NDHCLRVFP---HSNYVTC 399 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L-~s~s~Dg~V~iWd~~--~~~~~~~~~---h~~~V~~ 399 (686)
....... ..+.... ..+.....+|.+.|.+++|+|++ +| ++++.|++|+|||+. +++++..+. |...|++
T Consensus 78 ~~~~~~~--~~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~ 154 (450)
T 2vdu_B 78 SNKGDSI--KRTAAKV-PSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNA 154 (450)
T ss_dssp -------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEE
T ss_pred cCcCccc--cccCccc-cCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceE
Confidence 0000000 0000000 01223445788899999999999 65 899999999999999 888888774 7899999
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCcEE-----EEeccCCcEEEEEEccC---CCEEEEEecCCcEEEEeCCCCeee
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-----DWVDIRQIVTAVCYRPD---GQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-----~~~~~~~~V~~v~~spd---g~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
++|+| ++++|++|+.||.|++|++.++... .+..|...|++++|+|+ +++|++|+.|+.|++||+.+++..
T Consensus 155 ~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 155 ISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV 233 (450)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred EEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence 99999 9999999999999999999887654 45678899999999999 999999999999999999877643
Q ss_pred eeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------------------------
Q 005646 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--------------------------------- 518 (686)
Q Consensus 472 ~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~--------------------------------- 518 (686)
.. ....|...|++++|+ ++.+|++++.|+.|++||..+
T Consensus 234 ~~-------~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
T 2vdu_B 234 DK-------WLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND 304 (450)
T ss_dssp EE-------ECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------
T ss_pred ee-------eecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccc
Confidence 21 134577889999999 789999999999999999653
Q ss_pred -------ceeEcCCCCEEEEEe-CCCcEEEEeC
Q 005646 519 -------VIGKYKDGKHIVSAG-EDSNVYMWNC 543 (686)
Q Consensus 519 -------~~~~~~dg~~l~sgs-~Dg~V~iWd~ 543 (686)
.++++|++++|++++ .|+.|+||++
T Consensus 305 ~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 305 IIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 235667899999999 8999999999
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-25 Score=226.60 Aligned_cols=243 Identities=9% Similarity=0.076 Sum_probs=166.2
Q ss_pred cceeeccceEEEEEcCCccccccccccCceecccC-------------------------CceEEEEEeeC----CCEEE
Q 005646 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHD-------------------------GSILTMKFSPD----GQYLA 266 (686)
Q Consensus 216 l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~-------------------------~~I~~l~fspd----g~~La 266 (686)
.+.......|++|+..... .....++++.|+ ..|+.|+|+|| +++++
T Consensus 56 ~~~~~~~~~v~lw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~ 131 (356)
T 2w18_A 56 CIITACEDVVSLWKALDAW----QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLL 131 (356)
T ss_dssp EEEEEESSEEEEEEESSSS----BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEE
T ss_pred EEEEeccceEEEcccCCCc----cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEE
Confidence 4555667789999876641 111123333343 36778888888 88999
Q ss_pred EEeCCCcEEEEEeecCeeeeee-ccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCC
Q 005646 267 SAGDDGVVRLWQVVEDERLTEV-DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEK 345 (686)
Q Consensus 267 sgs~Dg~I~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (686)
++|.+ +++|++.+++.+... ..+... +..+.+.++ ++
T Consensus 132 s~g~~--~~v~~l~~g~lv~ss~~g~d~~-------------V~~~~~s~d---------------------------G~ 169 (356)
T 2w18_A 132 KSGNI--KAVLGLTKRRLVSSSGTLSDQQ-------------VEVMTFAED---------------------------GG 169 (356)
T ss_dssp EEEEE--EEEEEETTTEEEEEESSSTTCE-------------EEEEEECTT---------------------------SC
T ss_pred eCCCe--EEEEecCCCcEEEecccCCCCc-------------EEEEEECCC---------------------------Cc
Confidence 98854 888998777755442 222211 111111111 13
Q ss_pred CeEEeccCCCCeeEEEeeC---CC-EEEEEECCCcEEEEECCCCeeeeEee-C---CCCeEEEEEeecCCCEE-------
Q 005646 346 PLHEFHGHSGEILDLSWSK---NN-YLLSASIDKTVRLWRVGNDHCLRVFP-H---SNYVTCVHFNPVDDNYF------- 410 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~---~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h---~~~V~~v~fsp~~~~~l------- 410 (686)
.+..+.+|...+..++|++ ++ +|++++.|++|+|||+.++++++++. | ...|.+++|+| ++.++
T Consensus 170 ~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~ 248 (356)
T 2w18_A 170 GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPC 248 (356)
T ss_dssp EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEEC---
T ss_pred eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCC
Confidence 4556678999999999999 55 99999999999999999999999996 3 34688889999 88876
Q ss_pred -----EEEEcCCcEEEEecCCCcEEEEe------ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEee
Q 005646 411 -----ISGSIDGKVRIWAVLSCHVVDWV------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (686)
Q Consensus 411 -----~sgs~Dg~V~iwd~~~~~~~~~~------~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~ 479 (686)
++|+.|++|++||..+++.+... +|...+.+. +.++..+++|+.||+|+|||+.++++...
T Consensus 249 ~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg--~~sg~~lASgS~DgTIkIWDl~tGk~l~t------ 320 (356)
T 2w18_A 249 AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG--DVKDHCAAAILTSGTIAIWDLLLGQCTAL------ 320 (356)
T ss_dssp ---------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE--EEETTEEEEEETTSCEEEEETTTCSEEEE------
T ss_pred CcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc--ccCCCEEEEEcCCCcEEEEECCCCcEEEE------
Confidence 66889999999999999876543 333344333 33478999999999999999999886542
Q ss_pred ccccCCCCCe-EEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 480 SKKKAPCKRI-TGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 480 ~~~~~~~~~I-~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
..+|...+ ..++|+| ||++|++|+.|++|||||+
T Consensus 321 --L~gH~~~vvs~vafSP----------------------------DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 321 --LPPVSDQHWSFVKWSG----------------------------TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp --ECCC--CCCCEEEECS----------------------------SSSEEEEECTTSCEEEEEE
T ss_pred --ecCCCCCeEEEEEECC----------------------------CCCEEEEEECCCcEEEecC
Confidence 12344444 4689999 8888888888888888885
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-23 Score=212.27 Aligned_cols=246 Identities=15% Similarity=0.163 Sum_probs=155.6
Q ss_pred eEEEEEeeCCC---EEEEEeCCCcEEEEEeecC---eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 253 ILTMKFSPDGQ---YLASAGDDGVVRLWQVVED---ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 253 I~~l~fspdg~---~Lasgs~Dg~I~vWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
+.+|-|-..|- .++++++ .+|++|+..++ ++++.+.+++.++..+.+.++..+.+. +....-....+..+.-
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC-VALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE-EEECSSSEEEEEEECC
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceee-eeeccccccceEEEEE
Confidence 44555544333 6888887 58999999998 888888888877766666654433222 2222222222222222
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEE---CCCcEEEEECC-CCeeeeEee-CCCCeEEEE
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSAS---IDKTVRLWRVG-NDHCLRVFP-HSNYVTCVH 401 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s---~Dg~V~iWd~~-~~~~~~~~~-h~~~V~~v~ 401 (686)
+.+... ......-.+|...|..+ +++.+++++ .|++|++|++. .++.+..+. |...++.++
T Consensus 120 spd~~~-----------~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~ 185 (356)
T 2w18_A 120 SSDDES-----------EKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILT 185 (356)
T ss_dssp -----------------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEE
T ss_pred CCCccc-----------cccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEE
Confidence 211000 01111113455555554 566555554 49999999994 477777666 999999999
Q ss_pred Eeec--CCCEEEEEEcCCcEEEEecCCCcEEEEec-cC---CcEEEEEEccCCCEE------------EEEecCCcEEEE
Q 005646 402 FNPV--DDNYFISGSIDGKVRIWAVLSCHVVDWVD-IR---QIVTAVCYRPDGQGG------------IVGSMMGDCRFY 463 (686)
Q Consensus 402 fsp~--~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~~---~~V~~v~~spdg~~l------------~~gs~dg~i~iw 463 (686)
|+|. ++.+|++|+.|++|+|||+.+++++..+. +. ..+.+++|+|+|+++ ++|+.|++|++|
T Consensus 186 fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 186 FAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp EEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred eeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence 9985 56999999999999999999999876553 33 357788999999987 557789999999
Q ss_pred eCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 464 d~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
|..+++......+.+ ..+|...+ +.+ ..++.++++|+.|++|+|||+
T Consensus 266 d~~tgk~l~v~~~~~---p~Gh~~~~-------------lsg-----------------~~sg~~lASgS~DgTIkIWDl 312 (356)
T 2w18_A 266 NPKTTLSVGVMLYCL---PPGQAGRF-------------LEG-----------------DVKDHCAAAILTSGTIAIWDL 312 (356)
T ss_dssp ETTTTEEEEEEEECC---CTTCCCCE-------------EEE-----------------EEETTEEEEEETTSCEEEEET
T ss_pred ECCCCEEEEEEEeec---cCCCccee-------------Ecc-----------------ccCCCEEEEEcCCCcEEEEEC
Confidence 998887543111100 01111111 111 114788999999999999999
Q ss_pred CCCC
Q 005646 544 IGHE 547 (686)
Q Consensus 544 ~~~~ 547 (686)
.+++
T Consensus 313 ~tGk 316 (356)
T 2w18_A 313 LLGQ 316 (356)
T ss_dssp TTCS
T ss_pred CCCc
Confidence 8865
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-23 Score=219.04 Aligned_cols=273 Identities=13% Similarity=0.141 Sum_probs=186.8
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEE-EEEeCCCcEEEEEeecCee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~vWd~~~~~~ 284 (686)
..+|++++..+++|+.++ ++||+....... +..+...+..+++.++++++ ++++.|++|+|||+.+++.
T Consensus 24 ~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 24 DYEFNQDQSCLILSTLKS-FEIYNVHPVAHI---------MSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp EEEECTTSSEEEEECSSE-EEEEEETTEEEE---------EEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred EEEECCCCCEEEEEcCCE-EEEEecCCccee---------eeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence 456778888888888765 789997643221 11222358888999988887 5677889999999999998
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
+..+.... .+.++.+ .+..... . .+..+.+|+.... .+.+..+.. ....+++++
T Consensus 94 ~~~~~~~~-~v~~v~~-------------~~~~~~~--~----~~~~i~i~d~~~~---~~~~~~~~~---~~~~~~~s~ 147 (355)
T 3vu4_A 94 VSRIKVDA-PVKDLFL-------------SREFIVV--S----YGDVISVFKFGNP---WKRITDDIR---FGGVCEFSN 147 (355)
T ss_dssp EEEEECSS-CEEEEEE-------------CSSEEEE--E----ETTEEEEEESSTT---CCBSSCCEE---EEEEEEEET
T ss_pred EEEEECCC-ceEEEEE-------------cCCEEEE--E----EcCEEEEEECCCC---ceeeEEecc---CCceEEEEc
Confidence 88776432 2222222 2211111 0 1223333333221 012233332 334455666
Q ss_pred CCEEEE--EECCCcEEEEECCCCe----------------eeeEee-CCCCeEEEEEeecCCCEEEEEEcCCc-EEEEec
Q 005646 365 NNYLLS--ASIDKTVRLWRVGNDH----------------CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGK-VRIWAV 424 (686)
Q Consensus 365 ~~~L~s--~s~Dg~V~iWd~~~~~----------------~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~-V~iwd~ 424 (686)
.+|+. |+.||+|++||+.++. ++..+. |...|++++|+| ++++|++|+.||+ |+|||+
T Consensus 148 -~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 148 -GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKT 225 (355)
T ss_dssp -TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEET
T ss_pred -cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEEC
Confidence 64554 6899999999999875 255555 999999999999 9999999999998 999999
Q ss_pred CCCcEEEEec---cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeE---------------EeeccccCCC
Q 005646 425 LSCHVVDWVD---IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI---------------CVHSKKKAPC 486 (686)
Q Consensus 425 ~~~~~~~~~~---~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~---------------~~~~~~~~~~ 486 (686)
++++.+.... |...|++++|+|+|++|++++.|++|++||+..........+ ..........
T Consensus 226 ~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
T 3vu4_A 226 EDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH 305 (355)
T ss_dssp TTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred CCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence 9998886554 889999999999999999999999999999976532111100 0000011122
Q ss_pred CCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 487 KRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 487 ~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
.....++|++ +++.+++++.||.+++|+..
T Consensus 306 ~~~~~~a~~~-d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 306 VRGCKIAWIS-ESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp CCCCEEEESS-SSEEEEEETTTTEEEEEEEE
T ss_pred CCceEEEEeC-CCCEEEEEeCCCeEEEEEEE
Confidence 3346789999 88999999999999999753
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-23 Score=219.01 Aligned_cols=231 Identities=13% Similarity=0.195 Sum_probs=184.7
Q ss_pred ceeeecCCCcc-ceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEE-eCCCcEEEEEeecCe
Q 005646 206 GERVRLNEEDA-MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASA-GDDGVVRLWQVVEDE 283 (686)
Q Consensus 206 ~~~~s~~~~~l-~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~I~vWd~~~~~ 283 (686)
...+++++..+ ++++.++.|++|+...... .+.+..|. .|.+++|+|++++|+.+ +.|+.|++||+.+++
T Consensus 36 ~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~ 107 (391)
T 1l0q_A 36 GAVISPDGTKVYVANAHSNDVSIIDTATNNV-------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT 107 (391)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred eEEECCCCCEEEEECCCCCeEEEEECCCCeE-------EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCe
Confidence 45677888876 6777999999999865432 12344344 89999999999988655 467999999998876
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
.+.. +. +...+.+++|+
T Consensus 108 ~~~~--------------------------------------------------------------~~-~~~~~~~~~~s 124 (391)
T 1l0q_A 108 VAGT--------------------------------------------------------------VK-TGKSPLGLALS 124 (391)
T ss_dssp EEEE--------------------------------------------------------------EE-CSSSEEEEEEC
T ss_pred EEEE--------------------------------------------------------------Ee-CCCCcceEEEC
Confidence 3322 22 33467899999
Q ss_pred CCC-EE-EEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEE-EEEEcCCcEEEEecCCCcEEEEeccCCcEE
Q 005646 364 KNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF-ISGSIDGKVRIWAVLSCHVVDWVDIRQIVT 440 (686)
Q Consensus 364 ~~~-~L-~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~ 440 (686)
|++ +| ++++.|+.|++||+.+++++..+.....+.+++|+| +++++ ++++.|+.|++||+++++.+....+...+.
T Consensus 125 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 203 (391)
T 1l0q_A 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPS 203 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEE
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCcc
Confidence 999 55 688889999999999999999998777889999999 88776 677889999999999999888888888999
Q ss_pred EEEEccCCCEEEEEe---cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE-EEEeCCCcEEEEeC
Q 005646 441 AVCYRPDGQGGIVGS---MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV-MVSCADSQVRILQG 516 (686)
Q Consensus 441 ~v~~spdg~~l~~gs---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l-~~~s~D~~I~iwd~ 516 (686)
+++|+|+|+++++++ .++.|++||+.+++...... . ...+.+++|+| +++.+ ++++.|+.|++||.
T Consensus 204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~--------~-~~~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP--------V-GPDPAGIAVTP-DGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE--------C-CSSEEEEEECT-TSSEEEEEETTTTEEEEEET
T ss_pred ceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe--------c-CCCccEEEEcc-CCCEEEEEcCCCCEEEEEEC
Confidence 999999999999988 68999999999876543211 1 13478999999 56655 66788999999997
Q ss_pred Cc
Q 005646 517 PN 518 (686)
Q Consensus 517 ~~ 518 (686)
.+
T Consensus 274 ~~ 275 (391)
T 1l0q_A 274 AT 275 (391)
T ss_dssp TT
T ss_pred CC
Confidence 64
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.6e-23 Score=221.74 Aligned_cols=260 Identities=10% Similarity=0.043 Sum_probs=200.3
Q ss_pred eecCCC-ccceee----ccc----eEEEEEc--CCccccccccccCceecccCCceEEEEEee--------------CCC
Q 005646 209 VRLNEE-DAMFCS----KVQ----RVKVYHC--KKRSKELSALYKGQEIQAHDGSILTMKFSP--------------DGQ 263 (686)
Q Consensus 209 ~s~~~~-~l~~g~----~d~----~v~vw~~--~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--------------dg~ 263 (686)
+...+. .+++|+ .+| .++|||. .+.... ....+.+|...+..+++++ .+.
T Consensus 70 w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~ 144 (415)
T 2hqs_A 70 WSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL-----AQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRT 144 (415)
T ss_dssp HHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE-----EEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTC
T ss_pred HHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE-----eeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence 334443 444665 346 8999998 554321 1245778888888888775 156
Q ss_pred EEEEEeCC------CcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCC
Q 005646 264 YLASAGDD------GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPP 337 (686)
Q Consensus 264 ~Lasgs~D------g~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (686)
.|+.++.+ +.|++||+...
T Consensus 145 ~l~~~s~~~~~~~~~~i~i~d~~g~------------------------------------------------------- 169 (415)
T 2hqs_A 145 RIAYVVQTNGGQFPYELRVSDYDGY------------------------------------------------------- 169 (415)
T ss_dssp EEEEEEECSSSSCCEEEEEEETTSC-------------------------------------------------------
T ss_pred EEEEEEecCCCCccceEEEEcCCCC-------------------------------------------------------
Confidence 67666654 79999998642
Q ss_pred ccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCC---cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEE-E
Q 005646 338 KVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDK---TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-S 412 (686)
Q Consensus 338 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg---~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~-s 412 (686)
....+.+|...|.+++|+|+| +|++++.++ .|++||+.++++.....|...+.+++|+| ++++|+ +
T Consensus 170 --------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~sp-dg~~la~~ 240 (415)
T 2hqs_A 170 --------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFA 240 (415)
T ss_dssp --------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT-TSSEEEEE
T ss_pred --------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcC-CCCEEEEE
Confidence 234556688999999999999 999999885 99999999998877666889999999999 898777 6
Q ss_pred EEcCCc--EEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEec-CC--cEEEEeCCCCeeeeeeeEEeeccccCCCC
Q 005646 413 GSIDGK--VRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MG--DCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (686)
Q Consensus 413 gs~Dg~--V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 487 (686)
++.|+. |++||+.+++...+..+...+.+++|+|||++|++++. ++ .|++||+.+++... ...+..
T Consensus 241 ~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~---------l~~~~~ 311 (415)
T 2hqs_A 241 LSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR---------ITWEGS 311 (415)
T ss_dssp ECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE---------CCCSSS
T ss_pred EecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE---------EecCCC
Confidence 666655 99999999988877788889999999999999998876 44 67888988765321 122345
Q ss_pred CeEEEEEeCCCCCeEEEEeCC---CcEEEEeCCc-------------ceeEcCCCCEEEEEeCCC---cEEEEeCCCCC
Q 005646 488 RITGFQFLPQDSSKVMVSCAD---SQVRILQGPN-------------VIGKYKDGKHIVSAGEDS---NVYMWNCIGHE 547 (686)
Q Consensus 488 ~I~~l~fsp~~~~~l~~~s~D---~~I~iwd~~~-------------~~~~~~dg~~l~sgs~Dg---~V~iWd~~~~~ 547 (686)
.+..++|+| +++.|++++.+ ..|++||..+ .++|+|||++|++++.|+ .|++||+.++.
T Consensus 312 ~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 312 QNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred cccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 688999999 77888877764 5899999653 367899999999999887 79999987543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.4e-22 Score=219.68 Aligned_cols=267 Identities=11% Similarity=0.112 Sum_probs=201.3
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEe--ecCe
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV--VEDE 283 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~--~~~~ 283 (686)
+..+++++..+++++.++.|.+||...... .+++..+.. +..++|+|||++|++++.|++|++||+ .+++
T Consensus 142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~-------~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~ 213 (543)
T 1nir_A 142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKI-------VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT 213 (543)
T ss_dssp CSCCCGGGEEEEEEGGGTEEEEEETTTCCE-------EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE
T ss_pred ccccCCCCEEEEEEcCCCeEEEEECCCceE-------EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc
Confidence 345777788889999999999998765432 234442323 899999999999999999999999999 6655
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
.+. .+. +...+..++|+
T Consensus 214 ~~~--------------------------------------------------------------~i~-~g~~p~~va~s 230 (543)
T 1nir_A 214 KVA--------------------------------------------------------------EIK-IGIEARSVESS 230 (543)
T ss_dssp EEE--------------------------------------------------------------EEE-CCSEEEEEEEC
T ss_pred EEE--------------------------------------------------------------EEe-cCCCcceEEeC
Confidence 322 222 33467899999
Q ss_pred C----CC-EEEEEE-CCCcEEEEECCCCeeeeEeeC------------CCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 364 K----NN-YLLSAS-IDKTVRLWRVGNDHCLRVFPH------------SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 364 ~----~~-~L~s~s-~Dg~V~iWd~~~~~~~~~~~h------------~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
| +| +|++++ .+++|.+||..+++++..+.. ...+.++.++|.+..++++...+++|.+||+.
T Consensus 231 p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~ 310 (543)
T 1nir_A 231 KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 310 (543)
T ss_dssp CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT
T ss_pred CCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec
Confidence 9 98 888777 489999999999999888752 23789999999445566777788999999998
Q ss_pred CCcEE--EEeccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE
Q 005646 426 SCHVV--DWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (686)
Q Consensus 426 ~~~~~--~~~~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l 502 (686)
+.+.+ ....+...+..++|+|+|+++++++ .+++|.+||+.++++..... .....|......+ ++|+.+..+
T Consensus 311 ~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~----~g~~ph~g~g~~~-~~p~~g~~~ 385 (543)
T 1nir_A 311 DIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD----VGKTPHPGRGANF-VHPKYGPVW 385 (543)
T ss_dssp TSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE----CSSSBCCTTCEEE-EETTTEEEE
T ss_pred CCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec----cCCCCCCCCCccc-CCCCCccEE
Confidence 76543 2455667788999999999877654 58999999999988754321 1123344434333 577446666
Q ss_pred EEEe-CCCcEEEEeCCc----------------------ceeEcCCCCEEEEEe-------CCCcEEEEeCCCCCC
Q 005646 503 MVSC-ADSQVRILQGPN----------------------VIGKYKDGKHIVSAG-------EDSNVYMWNCIGHEE 548 (686)
Q Consensus 503 ~~~s-~D~~I~iwd~~~----------------------~~~~~~dg~~l~sgs-------~Dg~V~iWd~~~~~~ 548 (686)
+++. .|++|.+||..+ .+.++|++++|++++ .+++|.|||+.+.+.
T Consensus 386 ~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 386 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred EeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence 6665 689999998643 267889999999987 278999999999873
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.9e-21 Score=198.86 Aligned_cols=261 Identities=13% Similarity=0.213 Sum_probs=184.5
Q ss_pred ceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC-CcEEEEEee--cCeeeeeeccCCC
Q 005646 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD-GVVRLWQVV--EDERLTEVDIPEI 293 (686)
Q Consensus 217 ~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-g~I~vWd~~--~~~~~~~~~~~~~ 293 (686)
++++.++.|++|++.... .... .....|...+.+++|+|+|++|++++.+ +.|++|++. +++..
T Consensus 9 ~~~~~~~~v~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~-------- 75 (343)
T 1ri6_A 9 IASPESQQIHVWNLNHEG-ALTL----TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT-------- 75 (343)
T ss_dssp EEEGGGTEEEEEEECTTS-CEEE----EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE--------
T ss_pred EeCCCCCeEEEEEECCCC-cEEE----eeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee--------
Confidence 444789999999985321 1111 1122477789999999999999999887 999999997 33311
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s 372 (686)
.+..+..+. .+..++|+|++ +|++++
T Consensus 76 ----------------------------------------------------~~~~~~~~~-~~~~~~~s~dg~~l~~~~ 102 (343)
T 1ri6_A 76 ----------------------------------------------------FAAESALPG-SLTHISTDHQGQFVFVGS 102 (343)
T ss_dssp ----------------------------------------------------EEEEEECSS-CCSEEEECTTSSEEEEEE
T ss_pred ----------------------------------------------------eccccccCC-CCcEEEEcCCCCEEEEEe
Confidence 112222233 77899999999 676665
Q ss_pred C-CCcEEEEECC---CCeeeeEeeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecCC-CcEEE-----Ee-ccCCcEE
Q 005646 373 I-DKTVRLWRVG---NDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLS-CHVVD-----WV-DIRQIVT 440 (686)
Q Consensus 373 ~-Dg~V~iWd~~---~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~-~~~~~-----~~-~~~~~V~ 440 (686)
. ++.|.+||+. ..+.+..+.....+.+++|+| +++++++++ .++.|++||+.+ +++.. .. .....+.
T Consensus 103 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 181 (343)
T 1ri6_A 103 YNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 181 (343)
T ss_dssp TTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEE
T ss_pred cCCCeEEEEECCCCccccccccccCCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcc
Confidence 4 8899999994 445556666666799999999 888888877 899999999987 65532 11 2345788
Q ss_pred EEEEccCCCEEEEEe-cCCcEEEEeCCC--CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE-EEeCCCcEEEEeC
Q 005646 441 AVCYRPDGQGGIVGS-MMGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM-VSCADSQVRILQG 516 (686)
Q Consensus 441 ~v~~spdg~~l~~gs-~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~-~~s~D~~I~iwd~ 516 (686)
.++|+|+|+++++++ .++.|.+|++.. +.+..................+.+++|+| +++.|+ +...++.|++|+.
T Consensus 182 ~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~i~v~d~ 260 (343)
T 1ri6_A 182 HMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLITVFSV 260 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEEEecCCCEEEEEEE
Confidence 999999999776554 789999999954 43322221111111111234577899999 566655 5557999999986
Q ss_pred C------------------cceeEcCCCCEEEEEe-CCCcEEEEeCCC
Q 005646 517 P------------------NVIGKYKDGKHIVSAG-EDSNVYMWNCIG 545 (686)
Q Consensus 517 ~------------------~~~~~~~dg~~l~sgs-~Dg~V~iWd~~~ 545 (686)
. ..++++|+|++|++++ .|+.|.+|+++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 261 SEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp CTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred cCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 5 1257888999998888 689999996653
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-20 Score=203.23 Aligned_cols=222 Identities=10% Similarity=0.062 Sum_probs=175.7
Q ss_pred CCccceeecc------ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCC---cEEEEEeecCe
Q 005646 213 EEDAMFCSKV------QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG---VVRLWQVVEDE 283 (686)
Q Consensus 213 ~~~l~~g~~d------~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg---~I~vWd~~~~~ 283 (686)
+..++.++.+ +.|++|+..... .+.+.+|...|.+++|+|||++||+++.|+ .|++||+.+++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~--------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~ 214 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN--------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA 214 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS--------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC--------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc
Confidence 3445555443 799999986422 255778999999999999999999999885 99999998765
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
. ..+..|...+.+++|+
T Consensus 215 ~---------------------------------------------------------------~~l~~~~~~~~~~~~s 231 (415)
T 2hqs_A 215 V---------------------------------------------------------------RQVASFPRHNGAPAFS 231 (415)
T ss_dssp E---------------------------------------------------------------EEEECCSSCEEEEEEC
T ss_pred E---------------------------------------------------------------EEeecCCCcccCEEEc
Confidence 2 2234577789999999
Q ss_pred CCC-EEE-EEECCCc--EEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-CC--cEEEEecCCCcEEEEeccC
Q 005646 364 KNN-YLL-SASIDKT--VRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DG--KVRIWAVLSCHVVDWVDIR 436 (686)
Q Consensus 364 ~~~-~L~-s~s~Dg~--V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~~ 436 (686)
|+| +|+ +++.|+. |++||+.++++.....|...+.+++|+| ++++|++++. ++ .|++||+.+++......+.
T Consensus 232 pdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~ 310 (415)
T 2hqs_A 232 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG 310 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCEEEEecCC
Confidence 999 666 6666665 9999999988765556889999999999 9999988886 44 6888899988876666677
Q ss_pred CcEEEEEEccCCCEEEEEecC---CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCC---c
Q 005646 437 QIVTAVCYRPDGQGGIVGSMM---GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS---Q 510 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~---~ 510 (686)
..+..++|+|||++|++++.+ ..|++||+.+++... + ..+ ..+.+++|+| ++..|++++.++ .
T Consensus 311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-----l----~~~-~~~~~~~~sp-dg~~l~~~s~~~~~~~ 379 (415)
T 2hqs_A 311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-----L----SST-FLDETPSLAP-NGTMVIYSSSQGMGSV 379 (415)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-----C----CCS-SSCEEEEECT-TSSEEEEEEEETTEEE
T ss_pred CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-----e----cCC-CCcCCeEEcC-CCCEEEEEEcCCCccE
Confidence 789999999999999988764 589999998876532 1 112 2689999999 788888888776 7
Q ss_pred EEEEeCC
Q 005646 511 VRILQGP 517 (686)
Q Consensus 511 I~iwd~~ 517 (686)
|++||..
T Consensus 380 l~~~d~~ 386 (415)
T 2hqs_A 380 LNLVSTD 386 (415)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 8888864
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-20 Score=225.26 Aligned_cols=312 Identities=13% Similarity=0.079 Sum_probs=209.0
Q ss_pred ecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC------CcEEEEEeecCe
Q 005646 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD------GVVRLWQVVEDE 283 (686)
Q Consensus 210 s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D------g~I~vWd~~~~~ 283 (686)
..+++.++.++. +.|.+|+...... +.+.+|...|.+++|||||++||+++.+ ..|++|++.+++
T Consensus 21 ~~S~~~iaf~~~-~~l~~~~~~gg~~--------~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~ 91 (1045)
T 1k32_A 21 DIHGDRIIFVCC-DDLWEHDLKSGST--------RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE 91 (1045)
T ss_dssp EEETTEEEEEET-TEEEEEETTTCCE--------EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred EEeCCEEEEEEC-CcEEEEECCCCcE--------EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC
Confidence 334677777665 6899998865322 4567899999999999999999988653 479999998776
Q ss_pred eeeeeccCCCCC-------cceEEeecCCCCceeeeecc-c--cceeEEEeec----------cCCce------EEEeC-
Q 005646 284 RLTEVDIPEIDP-------SCIYFTVNHLSELKPLFMDK-E--KISILKSLRR----------TSESA------CVVFP- 336 (686)
Q Consensus 284 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~----------~~~~~------~~~~~- 336 (686)
...+..+.... ..+.|+++.. +....... . ....+..+.. ..... .+...
T Consensus 92 -~~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~ 168 (1045)
T 1k32_A 92 -IKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGR 168 (1045)
T ss_dssp -EEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEE
T ss_pred -eEEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEec
Confidence 34444333222 3444544442 11111100 0 1011111110 00000 00000
Q ss_pred ----------------Ccccc-ccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCC-CeeeeEeeCCCCeE
Q 005646 337 ----------------PKVFR-ILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGN-DHCLRVFPHSNYVT 398 (686)
Q Consensus 337 ----------------~~~~~-~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~-~~~~~~~~h~~~V~ 398 (686)
.++|. ........+.+|...+.++.|+++.++++++.|++++||.+.. +.....+.+...+.
T Consensus 169 ~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~ 248 (1045)
T 1k32_A 169 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYY 248 (1045)
T ss_dssp SCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSC
T ss_pred cCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcc
Confidence 00000 0113345567899999999999886667788899999998764 34445555334567
Q ss_pred EEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec-----------cCCcEEEEEEc-cCCCEEEEEecCCcEEEEeCC
Q 005646 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-----------IRQIVTAVCYR-PDGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 399 ~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-----------~~~~V~~v~~s-pdg~~l~~gs~dg~i~iwd~~ 466 (686)
.++|+| ++++|+.+. ++.|++||+...++..+.. +...+.+++|+ |||+.|++++ ++.+++|++.
T Consensus 249 ~~~~Sp-DG~~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~ 325 (1045)
T 1k32_A 249 PRHLNT-DGRRILFSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS 325 (1045)
T ss_dssp EEEEEE-SSSCEEEEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT
T ss_pred eeeEcC-CCCEEEEEe-CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC
Confidence 889999 999888874 8999999996555543222 23368899999 9999999887 8899999998
Q ss_pred CCeeeeeeeEEeeccccCCCC-CeEEEEEeCCCCCeEEEEeCCCcEE-EEeCC--------------cceeEcCCCCEEE
Q 005646 467 DNHLELDAEICVHSKKKAPCK-RITGFQFLPQDSSKVMVSCADSQVR-ILQGP--------------NVIGKYKDGKHIV 530 (686)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~-~I~~l~fsp~~~~~l~~~s~D~~I~-iwd~~--------------~~~~~~~dg~~l~ 530 (686)
++.... ...+.. .+..++|+ +++.+++++.+..+. +|+.. ..++++|||++|+
T Consensus 326 ~~~~~~---------~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la 394 (1045)
T 1k32_A 326 GTYVLK---------VPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAV 394 (1045)
T ss_dssp SSBEEE---------CSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEE
T ss_pred CCceEE---------ccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEE
Confidence 765332 122334 68899999 677888888888888 88853 2467999999999
Q ss_pred EEeCCCcEEEEeCCCCC
Q 005646 531 SAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 531 sgs~Dg~V~iWd~~~~~ 547 (686)
+++.|+.|++||+.+++
T Consensus 395 ~~~~~~~v~~~d~~tg~ 411 (1045)
T 1k32_A 395 VANDRFEIMTVDLETGK 411 (1045)
T ss_dssp EEETTSEEEEEETTTCC
T ss_pred EECCCCeEEEEECCCCc
Confidence 99999999999998865
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-19 Score=186.90 Aligned_cols=260 Identities=9% Similarity=0.103 Sum_probs=186.3
Q ss_pred cCCC-ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC-CCcEEEEEeecCeeeeee
Q 005646 211 LNEE-DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVEDERLTEV 288 (686)
Q Consensus 211 ~~~~-~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~vWd~~~~~~~~~~ 288 (686)
.+++ .+++...++.|.+||....... ..+..+...+ .++|+|+|++|++++. ++.|.+||+.+++..
T Consensus 7 ~~~~~~~v~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~--- 75 (331)
T 3u4y_A 7 TTSNFGIVVEQHLRRISFFSTDTLEIL-------NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK--- 75 (331)
T ss_dssp CCCCEEEEEEGGGTEEEEEETTTCCEE-------EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE---
T ss_pred CCCCEEEEEecCCCeEEEEeCccccee-------eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee---
Confidence 3344 4677888999999998654321 2233455666 9999999997777666 899999999876520
Q ss_pred ccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-E
Q 005646 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-Y 367 (686)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~ 367 (686)
...+..+..+..+++|+|++ +
T Consensus 76 ----------------------------------------------------------~~~~~~~~~~~~~~~~s~dg~~ 97 (331)
T 3u4y_A 76 ----------------------------------------------------------VVAIQEGQSSMADVDITPDDQF 97 (331)
T ss_dssp ----------------------------------------------------------EEEEEECSSCCCCEEECTTSSE
T ss_pred ----------------------------------------------------------EEecccCCCCccceEECCCCCE
Confidence 22233455555559999999 7
Q ss_pred EEEEECCC---cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCE-EEEEEcCCc-EEEEecCCCcEE-----EEeccCC
Q 005646 368 LLSASIDK---TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY-FISGSIDGK-VRIWAVLSCHVV-----DWVDIRQ 437 (686)
Q Consensus 368 L~s~s~Dg---~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~-l~sgs~Dg~-V~iwd~~~~~~~-----~~~~~~~ 437 (686)
|+++..++ .|.+||+.+++.+..+.+...+.+++|+| ++++ +++...++. |++|++.....+ .......
T Consensus 98 l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 176 (331)
T 3u4y_A 98 AVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGT 176 (331)
T ss_dssp EEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSS
T ss_pred EEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCC
Confidence 77544442 89999999999999888777889999999 8774 455566688 999998754322 2234456
Q ss_pred cEEEEEEccCCCEEEEE-ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE-eCCCcEEEEe
Q 005646 438 IVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CADSQVRILQ 515 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~g-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~-s~D~~I~iwd 515 (686)
.+..++|+|+|++++++ ..++.|++||+.+++...... .+. ....+.+++|+| ++++++++ ..++.|.+||
T Consensus 177 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~-~~~-----~~~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d 249 (331)
T 3u4y_A 177 RPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLN-AVG-----TNNLPGTIVVSR-DGSTVYVLTESTVDVFNFN 249 (331)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEE-EEE-----CSSCCCCEEECT-TSSEEEEECSSEEEEEEEE
T ss_pred CccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceee-ecc-----CCCCCceEEECC-CCCEEEEEEcCCCEEEEEE
Confidence 68999999999966555 468899999998776511010 111 125578899999 67766555 4578899999
Q ss_pred CCcc------------------------eeEcCCCCEEEEEeC-CCcEEEEeCCCCC
Q 005646 516 GPNV------------------------IGKYKDGKHIVSAGE-DSNVYMWNCIGHE 547 (686)
Q Consensus 516 ~~~~------------------------~~~~~dg~~l~sgs~-Dg~V~iWd~~~~~ 547 (686)
..+. ++++|||++|++++. ++.|+|||+....
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 250 QLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp TTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 6531 378899998876654 5699999998743
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-19 Score=218.71 Aligned_cols=306 Identities=10% Similarity=0.042 Sum_probs=210.4
Q ss_pred ceeeecCCCccceeecc------ceEEEEEcCCccccccccccCceecccCCce-------EEEEEeeCCCEEEEEeCC-
Q 005646 206 GERVRLNEEDAMFCSKV------QRVKVYHCKKRSKELSALYKGQEIQAHDGSI-------LTMKFSPDGQYLASAGDD- 271 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d------~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I-------~~l~fspdg~~Lasgs~D- 271 (686)
..+|+++|+++++++.+ ..|++|+..... .+.+..|...+ ..++|+|||+++++++.+
T Consensus 57 ~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~--------~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~ 128 (1045)
T 1k32_A 57 NARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE--------IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQ 128 (1045)
T ss_dssp EEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE--------EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTS
T ss_pred CeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC--------eEEcccCCCcccccccccccccCCCCCEEEEEECCcC
Confidence 35788999999987654 478888876432 24567788888 999999999988888755
Q ss_pred -----CcEEEEEeecCeeeeeeccCCCCCcceEEee---------------------------------------cCCCC
Q 005646 272 -----GVVRLWQVVEDERLTEVDIPEIDPSCIYFTV---------------------------------------NHLSE 307 (686)
Q Consensus 272 -----g~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~ 307 (686)
..|.+|++.+++....... ....+.|++ .+...
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~l~~~---~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~ 205 (1045)
T 1k32_A 129 PFSSMTCLYRVENDGINFVPLNLG---PATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTH 205 (1045)
T ss_dssp SSTTCCEEEEEEGGGTEEEECCSC---SCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSC
T ss_pred CCcccceEEEEECCCCCeEEecCC---CcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCc
Confidence 3577778777664322211 111122221 00001
Q ss_pred ceeeeeccccceeEEEeeccCCceEEEeCCccccc--cCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCC
Q 005646 308 LKPLFMDKEKISILKSLRRTSESACVVFPPKVFRI--LEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN 384 (686)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~ 384 (686)
+....+.++ ..+......... .+|.+ .......+..|. .+..++|+|+| .|+.+ .++.|.+||+..
T Consensus 206 v~~~~~s~d--~l~~~~~~dg~~-------~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~ 274 (1045)
T 1k32_A 206 VSSPVIVGH--RIYFITDIDGFG-------QIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT 274 (1045)
T ss_dssp CEEEEEETT--EEEEEECTTSSC-------EEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred ccceEEeCC--EEEEEEeccCce-------EEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence 111111111 000000000011 12221 133455555565 46778999999 67776 489999999954
Q ss_pred CeeeeEee------------CCCCeEEEEEe-ecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCC-cEEEEEEccCCCE
Q 005646 385 DHCLRVFP------------HSNYVTCVHFN-PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQG 450 (686)
Q Consensus 385 ~~~~~~~~------------h~~~V~~v~fs-p~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~-~V~~v~~spdg~~ 450 (686)
.+. ..+. |...+.+++|+ | ++++|++++ ++.|++|++.++.......+.. .+..++|+ ||+.
T Consensus 275 ~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~ 350 (1045)
T 1k32_A 275 EKI-EKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVA 350 (1045)
T ss_dssp CCE-EECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEE
T ss_pred eEe-eeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCe
Confidence 433 3333 23479999999 9 999888888 8899999999988777767777 89999999 9999
Q ss_pred EEEEecCCcEE-EEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-----------
Q 005646 451 GIVGSMMGDCR-FYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN----------- 518 (686)
Q Consensus 451 l~~gs~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~----------- 518 (686)
|+.++.++.+. +||+.++.... ...+...+..++|+| +++.|++++.++.|++||..+
T Consensus 351 l~~~s~~~~l~~~~d~~~~~~~~---------l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~ 420 (1045)
T 1k32_A 351 FIHGTREGDFLGIYDYRTGKAEK---------FEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSRE 420 (1045)
T ss_dssp EEEEETTEEEEEEEETTTCCEEE---------CCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEECCCceEEEEECCCCCceE---------ecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCC
Confidence 99998888888 99998765321 114557799999999 889999999999999999643
Q ss_pred ----ceeEcCCCCEEEEEeCCC----------cEEEEeCCCCC
Q 005646 519 ----VIGKYKDGKHIVSAGEDS----------NVYMWNCIGHE 547 (686)
Q Consensus 519 ----~~~~~~dg~~l~sgs~Dg----------~V~iWd~~~~~ 547 (686)
.++|+|||++|++++.++ .|++||+.+++
T Consensus 421 ~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 421 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 367899999999988754 89999998764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.4e-20 Score=203.47 Aligned_cols=275 Identities=12% Similarity=0.069 Sum_probs=202.0
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee----CCCEEEEEeC-CCcEEEEEe
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP----DGQYLASAGD-DGVVRLWQV 279 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp----dg~~Lasgs~-Dg~I~vWd~ 279 (686)
....|+++++++++++.++.|.+||....... ...++. +...+..++|+| ||++|++++. +++|.|||.
T Consensus 182 ~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-----~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~ 255 (543)
T 1nir_A 182 HISRMSASGRYLLVIGRDARIDMIDLWAKEPT-----KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG 255 (543)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSSSCE-----EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET
T ss_pred ceEEECCCCCEEEEECCCCeEEEEECcCCCCc-----EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEec
Confidence 34678899999999999999999998311111 123344 345689999999 9999999985 899999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC-CCee
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS-GEIL 358 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~ 358 (686)
.+++.+..+........ .. .-|. ..+.
T Consensus 256 ~t~~~~~~i~~~g~~~~--------------------------------------------------~~--~~~~~~~v~ 283 (543)
T 1nir_A 256 ETLEPKQIVSTRGMTVD--------------------------------------------------TQ--TYHPEPRVA 283 (543)
T ss_dssp TTCCEEEEEECCEECSS--------------------------------------------------SC--CEESCCCEE
T ss_pred cccccceeecccCcccC--------------------------------------------------cc--ccccCCceE
Confidence 88876665542210000 00 0132 3788
Q ss_pred EEEeeCCC--EEEEEECCCcEEEEECCCCeeee--EeeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecCCCcEEEEe
Q 005646 359 DLSWSKNN--YLLSASIDKTVRLWRVGNDHCLR--VFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCHVVDWV 433 (686)
Q Consensus 359 ~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~--~~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~~~~~~~~ 433 (686)
.+.++|++ ++++...+++|.+||+.+.+.+. .+.+...+..++|+| ++++|++++ .+++|.+||+.+++++...
T Consensus 284 ~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i 362 (543)
T 1nir_A 284 AIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALV 362 (543)
T ss_dssp EEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEee
Confidence 99999987 77788889999999998876555 556778899999999 999877665 5899999999999988655
Q ss_pred c-----cCCcEEEEEEccC-CCEEEEEe-cCCcEEEEeCCC-------CeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 434 D-----IRQIVTAVCYRPD-GQGGIVGS-MMGDCRFYNVSD-------NHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 434 ~-----~~~~V~~v~~spd-g~~l~~gs-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
. |......+ ++|+ |..++++. .|++|.+||+.+ .++.. . ...|...+..+.|+| ++
T Consensus 363 ~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~--~------l~~~g~~~~~v~~~p-dg 432 (543)
T 1nir_A 363 DVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA--E------LQGQGGGSLFIKTHP-KS 432 (543)
T ss_dssp ECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE--E------EECSCSCCCCEECCT-TC
T ss_pred ccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEE--E------EEcCCCCceEEEcCC-CC
Confidence 4 33333333 5787 65666665 589999999987 33322 1 223446678899999 88
Q ss_pred CeEEEEe-------CCCcEEEEeCCcc------------------------eeEcCCCCEEEEEe-----CCCcEEEEeC
Q 005646 500 SKVMVSC-------ADSQVRILQGPNV------------------------IGKYKDGKHIVSAG-----EDSNVYMWNC 543 (686)
Q Consensus 500 ~~l~~~s-------~D~~I~iwd~~~~------------------------~~~~~dg~~l~sgs-----~Dg~V~iWd~ 543 (686)
+.|.+++ .+++|.+||..+. +.|+|+|++|+.+. .|+.|.|||.
T Consensus 433 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 433 SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp CEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred CcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 9999887 2779999996531 34678999999762 4899999999
Q ss_pred CCCCC
Q 005646 544 IGHEE 548 (686)
Q Consensus 544 ~~~~~ 548 (686)
.+++.
T Consensus 513 ~t~~~ 517 (543)
T 1nir_A 513 KTLKL 517 (543)
T ss_dssp TTTEE
T ss_pred CCceE
Confidence 99873
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-20 Score=213.35 Aligned_cols=264 Identities=14% Similarity=0.108 Sum_probs=193.6
Q ss_pred ceeeecCCCccceeec-cc-----eEEEEEcCCccccccccccCceecccC------------------------CceEE
Q 005646 206 GERVRLNEEDAMFCSK-VQ-----RVKVYHCKKRSKELSALYKGQEIQAHD------------------------GSILT 255 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~-d~-----~v~vw~~~~~~~~~~~~~~~~~l~~H~------------------------~~I~~ 255 (686)
...|+++|+++++++. ++ .|++|+....... +.+..|. ..|.+
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR-------LLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE-------EEECGGGTC--------------------CCEESCC
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee-------EccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 4678899999999988 87 8999998764321 1111121 34889
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEe
Q 005646 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVF 335 (686)
Q Consensus 256 l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (686)
++|||||++|++++. +.|++||+.++..
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~--------------------------------------------------- 141 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGK--------------------------------------------------- 141 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCST---------------------------------------------------
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCc---------------------------------------------------
Confidence 999999999999987 8999999987610
Q ss_pred CCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCC----------------e
Q 005646 336 PPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNY----------------V 397 (686)
Q Consensus 336 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~----------------V 397 (686)
..+..+..|...+..++|+|+| +|+.++ ++.|++||+.+++...... +... +
T Consensus 142 ---------~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~ 211 (741)
T 2ecf_A 142 ---------AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRH 211 (741)
T ss_dssp ---------TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCC
T ss_pred ---------ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccc
Confidence 0012234567789999999999 788777 5699999999988776554 3222 4
Q ss_pred EEEEEeecCCCEEEEEEcCC---------------------------------cEEEEecCC-CcEEEEe---ccCCcEE
Q 005646 398 TCVHFNPVDDNYFISGSIDG---------------------------------KVRIWAVLS-CHVVDWV---DIRQIVT 440 (686)
Q Consensus 398 ~~v~fsp~~~~~l~sgs~Dg---------------------------------~V~iwd~~~-~~~~~~~---~~~~~V~ 440 (686)
.+++|+| |+++|++++.|+ .|++||+.+ ++..... .+...+.
T Consensus 212 ~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 290 (741)
T 2ecf_A 212 TGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLA 290 (741)
T ss_dssp CSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEE
T ss_pred cceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEE
Confidence 7899999 999999998776 899999998 8765443 3667899
Q ss_pred EEEEccCCCEEEEEec-----CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 441 AVCYRPDGQGGIVGSM-----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
.++| |||++|++++. +..|++||+.+++....... ........+..++|+| +++++++++.|+.++||.
T Consensus 291 ~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~----~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~ 364 (741)
T 2ecf_A 291 RVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE----TSPTWVPLHNSLRFLD-DGSILWSSERTGFQHLYR 364 (741)
T ss_dssp EEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE----ECSSCCCCCSCCEECT-TSCEEEEECTTSSCEEEE
T ss_pred EEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc----CCCCcCCcCCceEECC-CCeEEEEecCCCccEEEE
Confidence 9999 99999998764 56799999998875432211 1111111456889999 667888888999777775
Q ss_pred CC--c-------------ce-eEcCCCCEEEE-EeCCC--cEEEEeCCC
Q 005646 516 GP--N-------------VI-GKYKDGKHIVS-AGEDS--NVYMWNCIG 545 (686)
Q Consensus 516 ~~--~-------------~~-~~~~dg~~l~s-gs~Dg--~V~iWd~~~ 545 (686)
.. . .+ .++|||++|+. ++.|+ .++||++..
T Consensus 365 ~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 365 IDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp ECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred EcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 32 0 12 58999997765 55555 899999864
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=185.00 Aligned_cols=236 Identities=14% Similarity=0.102 Sum_probs=172.0
Q ss_pred eeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeec-CeeeeeeccCCCCCcc
Q 005646 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE-DERLTEVDIPEIDPSC 297 (686)
Q Consensus 219 g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~-~~~~~~~~~~~~~~~~ 297 (686)
++.++.|++|+...... ..+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++...
T Consensus 18 ~~~~~~i~~~d~~~~~~--------~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~----------- 77 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKM--------RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK----------- 77 (297)
T ss_dssp CCCCEEEEEEETTTTEE--------EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE-----------
T ss_pred CCcceeEEEEeCCCCce--------eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE-----------
Confidence 56789999999865432 23556899999999999999999987 78999999987 54211
Q ss_pred eEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccC-CCCeeEEEeeCCC-EEEEEE--C
Q 005646 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH-SGEILDLSWSKNN-YLLSAS--I 373 (686)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~l~~s~~~-~L~s~s--~ 373 (686)
.+.+| ...|.+++|+|++ +|++++ .
T Consensus 78 ---------------------------------------------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 106 (297)
T 2ojh_A 78 ---------------------------------------------------VDTGFATICNNDHGISPDGALYAISDKVE 106 (297)
T ss_dssp ---------------------------------------------------CCCTTCCCBCSCCEECTTSSEEEEEECTT
T ss_pred ---------------------------------------------------eccccccccccceEECCCCCEEEEEEeCC
Confidence 11223 4678899999999 888888 3
Q ss_pred CCcEEEEEC--CCCeeeeEeeCCCCeEEEEEeecCCCEEE-EEEcCCcEEEEec--CCCcEEEEeccCCcEEEEEEccCC
Q 005646 374 DKTVRLWRV--GNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDGKVRIWAV--LSCHVVDWVDIRQIVTAVCYRPDG 448 (686)
Q Consensus 374 Dg~V~iWd~--~~~~~~~~~~h~~~V~~v~fsp~~~~~l~-sgs~Dg~V~iwd~--~~~~~~~~~~~~~~V~~v~~spdg 448 (686)
++.++||.+ .+++ ...+.+...+.+++|+| ++++|+ +++.++.++||++ .++.......+...+.+++|+|+|
T Consensus 107 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 184 (297)
T 2ojh_A 107 FGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDG 184 (297)
T ss_dssp TSSCEEEEEETTCCC-CEECCSSSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTS
T ss_pred CCcceEEEEECCCCc-eEEeecCCCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCC
Confidence 455566554 4444 44455555699999999 888776 7888999999985 456666677778889999999999
Q ss_pred CEEEEEe-cCCcEEEEeCCC-CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC-----------CcEEEEe
Q 005646 449 QGGIVGS-MMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----------SQVRILQ 515 (686)
Q Consensus 449 ~~l~~gs-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D-----------~~I~iwd 515 (686)
+.|++++ .++.+++|++.. ..... ....+...+..+.|+| +++.|++++.+ +.|.+||
T Consensus 185 ~~l~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~d 255 (297)
T 2ojh_A 185 RWIYFNSSRTGQMQIWRVRVDGSSVE--------RITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLMD 255 (297)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCEE--------ECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred CEEEEEecCCCCccEEEECCCCCCcE--------EEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence 9888766 589999998752 22111 1222445688999999 67777777655 5688887
Q ss_pred CCc-----------------ceeEcCCCCEEEEEeCCC
Q 005646 516 GPN-----------------VIGKYKDGKHIVSAGEDS 536 (686)
Q Consensus 516 ~~~-----------------~~~~~~dg~~l~sgs~Dg 536 (686)
..+ .++|+|+|++|++++.|.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 256 MDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 542 245677888888776553
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.8e-20 Score=190.77 Aligned_cols=257 Identities=12% Similarity=0.101 Sum_probs=189.7
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceec-ccCC-ceEEEEEeeCCCEE-EEEeCCCcEEEEEeecCeeeeeecc
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQ-AHDG-SILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~-~H~~-~I~~l~fspdg~~L-asgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
+.+++++.++.|.+||...... . ..+. ++.. .+..++|+|+|++| ++++.++.|.+||+.+++.+..+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~-~------~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 74 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV-D------KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE-E------EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred cEEEEcCCCCeEEEEECCCCcE-E------EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence 3678889999999999865322 1 1222 2222 47889999999876 4556678999999988775443321
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL 369 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~ 369 (686)
... ..|...+..++|+|++ +|+
T Consensus 75 ~~~---------------------------------------------------------~~~~~~~~~~~~s~dg~~l~ 97 (337)
T 1pby_B 75 STP---------------------------------------------------------EERVKSLFGAALSPDGKTLA 97 (337)
T ss_dssp CBT---------------------------------------------------------TEEEECTTCEEECTTSSEEE
T ss_pred CCc---------------------------------------------------------ccccccccceEECCCCCEEE
Confidence 100 0022356789999999 787
Q ss_pred EEE------------CCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCC
Q 005646 370 SAS------------IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ 437 (686)
Q Consensus 370 s~s------------~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~ 437 (686)
+++ .++.|.+||+.+++.+..+.....+.+++|+| ++++|+++ ++.|++||+.+++.+.......
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~ 174 (337)
T 1pby_B 98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS 174 (337)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTT
T ss_pred EEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccc
Confidence 776 67999999999999988888777789999999 88888777 7899999999998876554433
Q ss_pred cEEEEEEccCCCEEEEEecCC------------------------cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 438 IVTAVCYRPDGQGGIVGSMMG------------------------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
....+.|+|+|+.+++.+..+ .|.+||+.+++.. ... .. .+...+.+++
T Consensus 175 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~--~~----~~~~~~~~~~ 247 (337)
T 1pby_B 175 WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MRE--VR----IMDVFYFSTA 247 (337)
T ss_dssp TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEE--EE----ECSSCEEEEE
T ss_pred cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eee--cC----CCCCceeeEE
Confidence 112347899998776654332 4689999987764 221 11 2335688999
Q ss_pred EeCCCCCeEEEEeCCCcEEEEeCCc--------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 494 FLPQDSSKVMVSCADSQVRILQGPN--------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
|+| +++.++++ ++.|.+||..+ .++++|+|++|++++.|+.|++||+.+++
T Consensus 248 ~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 248 VNP-AKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ECT-TSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred ECC-CCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 999 77777777 79999999653 36788999999999999999999998875
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-20 Score=212.42 Aligned_cols=247 Identities=11% Similarity=0.111 Sum_probs=176.3
Q ss_pred CCceEEEEEeeCCCEEEEEeC-CC-----cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 250 DGSILTMKFSPDGQYLASAGD-DG-----VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~-Dg-----~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
...|.+++|+|||++|++++. |+ .|++||+.+++....+......+..-.+ ...
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-----------~~~--------- 95 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETL-----------SDE--------- 95 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-----------------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccc-----------cch---------
Confidence 457999999999999999998 88 9999999988765444322111000000 000
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCC---eeeeEeeCCCCeEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND---HCLRVFPHSNYVTC 399 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~---~~~~~~~h~~~V~~ 399 (686)
.+.. .....+. ....|.+++|+|+| +|++++. +.|++||+.++ .......|...+.+
T Consensus 96 -------------~~~~----~~~~~~~-~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~ 156 (741)
T 2ecf_A 96 -------------EKAR----RERQRIA-AMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATD 156 (741)
T ss_dssp -----------------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEE
T ss_pred -------------hhhh----hhhhhhc-cccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCccccc
Confidence 0000 0000011 12357899999999 8888876 99999999988 55555558889999
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCc-----------------EEEEEEccCCCEEEEEecCC----
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI-----------------VTAVCYRPDGQGGIVGSMMG---- 458 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~-----------------V~~v~~spdg~~l~~gs~dg---- 458 (686)
++|+| ++++|+.++ ++.|++||+.+++.......... +..++|+|||++|++++.|+
T Consensus 157 ~~~SP-DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~ 234 (741)
T 2ecf_A 157 AKLSP-KGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVP 234 (741)
T ss_dssp EEECT-TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSC
T ss_pred ccCCC-CCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCc
Confidence 99999 999999988 56999999999887655433221 47799999999999988766
Q ss_pred -----------------------------cEEEEeCCC-CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC-
Q 005646 459 -----------------------------DCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA- 507 (686)
Q Consensus 459 -----------------------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~- 507 (686)
.|++||+.+ ++..... . ...+...+..++| | +++.|++++.
T Consensus 235 ~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~---~---~~~~~~~~~~~~~-p-Dg~~l~~~~~~ 306 (741)
T 2ecf_A 235 VQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWID---L---GKEQDIYLARVNW-R-DPQHLSFQRQS 306 (741)
T ss_dssp EEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEEC---C---CSCSSEEEEEEEE-E-ETTEEEEEEEE
T ss_pred eEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEec---C---CCCcceEEEEEEe-C-CCCEEEEEEec
Confidence 788999987 6543211 0 1135567899999 9 7787776653
Q ss_pred ----CCcEEEEeCCc-------------------ceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 508 ----DSQVRILQGPN-------------------VIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 508 ----D~~I~iwd~~~-------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+..|++||..+ .++|+|||+++++++.||.++||.++.
T Consensus 307 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~ 367 (741)
T 2ecf_A 307 RDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDS 367 (741)
T ss_dssp TTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECS
T ss_pred ccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcC
Confidence 56788998532 467899999999999999888888763
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-18 Score=183.01 Aligned_cols=257 Identities=11% Similarity=0.125 Sum_probs=177.4
Q ss_pred ccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC---CCcEEEEEeecCeeeeeeccCCCCCcc
Q 005646 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD---DGVVRLWQVVEDERLTEVDIPEIDPSC 297 (686)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~vWd~~~~~~~~~~~~~~~~~~~ 297 (686)
.++.|.+|.++.....+..+ ....+...+..++|+|||+ |++++. ++.|++|++.++...
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~----~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~------------ 76 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTND----GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH------------ 76 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEE----EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE------------
T ss_pred CCCCEEEEEEcCCCCeEEEe----eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE------------
Confidence 45678899887644333221 2234567788899999999 555544 689999999766521
Q ss_pred eEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEE-CCC
Q 005646 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS-IDK 375 (686)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s-~Dg 375 (686)
.+..+..+...+..++|+|++ +|++++ .++
T Consensus 77 ------------------------------------------------~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~ 108 (347)
T 3hfq_A 77 ------------------------------------------------KLNTVVAPGTPPAYVAVDEARQLVYSANYHKG 108 (347)
T ss_dssp ------------------------------------------------EEEEEEEESCCCSEEEEETTTTEEEEEETTTT
T ss_pred ------------------------------------------------EeeeeecCCCCCEEEEECCCCCEEEEEeCCCC
Confidence 122333466778899999999 788877 789
Q ss_pred cEEEEECCC-C--eeeeEeeCC----------CCeEEEEEeecCCCEEEEEEcCCcEEEEecC-CCcEEEE----eccCC
Q 005646 376 TVRLWRVGN-D--HCLRVFPHS----------NYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-SCHVVDW----VDIRQ 437 (686)
Q Consensus 376 ~V~iWd~~~-~--~~~~~~~h~----------~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~-~~~~~~~----~~~~~ 437 (686)
+|.+|++.. + +.+..+.+. ..+.+++|+| +++++++...++.|++|++. ++++... .....
T Consensus 109 ~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 187 (347)
T 3hfq_A 109 TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF 187 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC
T ss_pred EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC
Confidence 999999963 2 333334332 2488999999 88877777778999999998 5554322 12234
Q ss_pred cEEEEEEccCCCEEEE-EecCCcEEEEeCCC--CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE-EEEeCCCcEEE
Q 005646 438 IVTAVCYRPDGQGGIV-GSMMGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV-MVSCADSQVRI 513 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~-gs~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l-~~~s~D~~I~i 513 (686)
.+..++|+|||+++++ +..++.|++|++.. +++.....+............+..++|+| ++++| ++...++.|.+
T Consensus 188 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~~v~v 266 (347)
T 3hfq_A 188 GPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYNTLAV 266 (347)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTTEEEE
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCCEEEE
Confidence 6788999999996666 56688999999874 44432222211111111124588999999 67766 55667899999
Q ss_pred EeCC------------------cceeEcCCCCEEEEEeCC-CcEEEEeCC
Q 005646 514 LQGP------------------NVIGKYKDGKHIVSAGED-SNVYMWNCI 544 (686)
Q Consensus 514 wd~~------------------~~~~~~~dg~~l~sgs~D-g~V~iWd~~ 544 (686)
|+.. ..++++|||++|++++.+ +.|.+|+++
T Consensus 267 ~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 267 FAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 9853 236788999999888765 899999654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-19 Score=193.12 Aligned_cols=211 Identities=12% Similarity=0.050 Sum_probs=151.9
Q ss_pred CcceeeecCCCccceeeccceEEEEEcCCcccc------cccc--ccCceecccCCceEEEEEeeCCCEEE----EEeCC
Q 005646 204 GEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKE------LSAL--YKGQEIQAHDGSILTMKFSPDGQYLA----SAGDD 271 (686)
Q Consensus 204 ~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~------~~~~--~~~~~l~~H~~~I~~l~fspdg~~La----sgs~D 271 (686)
....+++.++..+++++.++ ++||+....... .... ........|.+.|++++|+|+|++|| +|+.|
T Consensus 39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 45567788888888888887 899875422110 0000 01111224677899999999999999 88899
Q ss_pred CcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEec
Q 005646 272 GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351 (686)
Q Consensus 272 g~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 351 (686)
++|+|||+.++.... ...... -..+..+.
T Consensus 118 ~~v~iwd~~~~~~~~-----~~~~~~----------------------------------------------~~~~~~~~ 146 (434)
T 2oit_A 118 SIIAFFDVRTFSNEA-----KQQKRP----------------------------------------------FAYHKLLK 146 (434)
T ss_dssp EEEEEEEHHHHHCTT-----CSSCCC----------------------------------------------SEEEECCC
T ss_pred ceEEEEEccccccCC-----cCCcce----------------------------------------------eeeeeccC
Confidence 999999997641000 000000 00134456
Q ss_pred cCCCCeeEEEeeCC-C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 352 GHSGEILDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 352 ~h~~~V~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
+|...|.+++|+|+ + +|++++.|++|++||++++..+.... |...|++++|+| ++++|++|+.||+|++||++ ++
T Consensus 147 ~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~ 224 (434)
T 2oit_A 147 DAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQ 224 (434)
T ss_dssp SGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CC
T ss_pred CCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-Cc
Confidence 79999999999998 5 99999999999999999987665444 889999999999 89999999999999999998 44
Q ss_pred EEE-Eecc-------CCcEEEEEEccCCCEEEEE-ecCCc------EEEEeCCCC
Q 005646 429 VVD-WVDI-------RQIVTAVCYRPDGQGGIVG-SMMGD------CRFYNVSDN 468 (686)
Q Consensus 429 ~~~-~~~~-------~~~V~~v~~spdg~~l~~g-s~dg~------i~iwd~~~~ 468 (686)
... ...+ ...|.+++|++++.++++. +.+|. +++|++...
T Consensus 225 ~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 225 EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 332 2222 2379999999998877553 34433 899999765
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-18 Score=179.37 Aligned_cols=230 Identities=9% Similarity=0.050 Sum_probs=176.9
Q ss_pred cCCceEEEEEeeCCCEEEEEeC-------CCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 249 HDGSILTMKFSPDGQYLASAGD-------DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~-------Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
....+..++|+|+|++|++++. ++.|.+||..+++.+..+.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------- 86 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-------------------------------- 86 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------------------
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------------------
Confidence 3456889999999999988874 5689999998876433322
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE-EEECCCcEEEEECCCCeeeeEeeC-CC---
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFPH-SN--- 395 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~-s~s~Dg~V~iWd~~~~~~~~~~~h-~~--- 395 (686)
....+..++|+|++ +++ +...++.|.+||+.+++.+..+.. ..
T Consensus 87 -------------------------------~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 135 (353)
T 3vgz_A 87 -------------------------------NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT 135 (353)
T ss_dssp -------------------------------ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC
T ss_pred -------------------------------cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc
Confidence 12346778999998 454 555679999999999998888773 22
Q ss_pred ------CeEEEEEeecCCCEEEEEE--cCCcEEEEecCCCcEEEEec-cCCcEEEEEEccCCCEEEEEecCCcEEEEeCC
Q 005646 396 ------YVTCVHFNPVDDNYFISGS--IDGKVRIWAVLSCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 396 ------~V~~v~fsp~~~~~l~sgs--~Dg~V~iwd~~~~~~~~~~~-~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~ 466 (686)
.+.+++|+| +++++++++ .++.|.+||+.+++.+.... +...+..++|+|+|+++++++.++.|.+||+.
T Consensus 136 ~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~ 214 (353)
T 3vgz_A 136 EEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTA 214 (353)
T ss_dssp SSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT
T ss_pred cccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECC
Confidence 278999999 888777776 47899999999999887766 55668899999999999999999999999999
Q ss_pred CCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe-CCCcEEEEeCCc-------------ceeEcCCCCEEEEE
Q 005646 467 DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPN-------------VIGKYKDGKHIVSA 532 (686)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s-~D~~I~iwd~~~-------------~~~~~~dg~~l~sg 532 (686)
+++....... ....+...+.+++|+| +++.+++++ .++.|.+||..+ .++++|+|++|+.+
T Consensus 215 ~~~~~~~~~~----~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~ 289 (353)
T 3vgz_A 215 DNKILSRKKL----LDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVT 289 (353)
T ss_dssp TTEEEEEEEC----CCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEE
T ss_pred CCeEEEEEEc----CCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEE
Confidence 8876543221 1222445688999999 566555555 559999999753 36788999976665
Q ss_pred e-CCCcEEEEeCCCCC
Q 005646 533 G-EDSNVYMWNCIGHE 547 (686)
Q Consensus 533 s-~Dg~V~iWd~~~~~ 547 (686)
+ .++.|.+||+.+++
T Consensus 290 ~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 290 HRQAGKVSVIDAKSYK 305 (353)
T ss_dssp ETTTTEEEEEETTTTE
T ss_pred ECCCCeEEEEECCCCe
Confidence 5 78999999998765
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-19 Score=206.38 Aligned_cols=263 Identities=10% Similarity=0.114 Sum_probs=188.9
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCC---ceEEEEEeeCCCEEEEEeCC---------Cc
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDG---SILTMKFSPDGQYLASAGDD---------GV 273 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~Lasgs~D---------g~ 273 (686)
...|+++++++++ +.++.|++|+...... .+.+.+|.. .|.+++|||||++|++++.+ +.
T Consensus 21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~~-------~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 21 EAKWISDTEFIYR-EQKGTVRLWNVETNTS-------TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-------EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred ccEEcCCCcEEEE-eCCCCEEEEECCCCcE-------EEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3578888887666 7899999998765432 123444554 49999999999999999875 77
Q ss_pred EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccC
Q 005646 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (686)
Q Consensus 274 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 353 (686)
|++||+.+++. ..+ ....+|
T Consensus 93 i~~~d~~~~~~-~~l-----------------------------------------------------------~~~~~~ 112 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSL-----------------------------------------------------------DPPEVS 112 (723)
T ss_dssp EEEEESSSCCC-EEC-----------------------------------------------------------CCTTCC
T ss_pred EEEEECCCCce-Eec-----------------------------------------------------------cCCccc
Confidence 88999987752 111 111245
Q ss_pred CCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCC------------------eEEEEEeecCCCEEEEE
Q 005646 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNY------------------VTCVHFNPVDDNYFISG 413 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~------------------V~~v~fsp~~~~~l~sg 413 (686)
...+..++|||+| .|+.++. +.|++||+.+++...... +... +.+++|+| |+++|+++
T Consensus 113 ~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~ 190 (723)
T 1xfd_A 113 NAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYA 190 (723)
T ss_dssp SCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEE
T ss_pred cccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEE
Confidence 5668899999999 8888876 799999999988776655 3333 37899999 99999998
Q ss_pred EcCC----------------------------------cEEEEecCCCcE-EEEecc------CCcEEEEEEccCCCEEE
Q 005646 414 SIDG----------------------------------KVRIWAVLSCHV-VDWVDI------RQIVTAVCYRPDGQGGI 452 (686)
Q Consensus 414 s~Dg----------------------------------~V~iwd~~~~~~-~~~~~~------~~~V~~v~~spdg~~l~ 452 (686)
+.|+ .|++||+.+++. ..+..+ ...+..++|+|||++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~ 270 (723)
T 1xfd_A 191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV 270 (723)
T ss_dssp EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE
T ss_pred EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEE
Confidence 8653 799999998875 333322 56789999999999887
Q ss_pred EEec----CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCe----EEEEEeCCCCCeEEE--EeCCC------cEEEEe-
Q 005646 453 VGSM----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI----TGFQFLPQDSSKVMV--SCADS------QVRILQ- 515 (686)
Q Consensus 453 ~gs~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I----~~l~fsp~~~~~l~~--~s~D~------~I~iwd- 515 (686)
+... +..|++||+.+++....... .+...+ ..++|+| +++.|+. ...++ .|.+||
T Consensus 271 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~-------~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~ 342 (723)
T 1xfd_A 271 TWLNRAQNVSILTLCDATTGVCTKKHED-------ESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSS 342 (723)
T ss_dssp EEEETTSCEEEEEEEETTTCCEEEEEEE-------ECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECS
T ss_pred EEEcCCCCeEEEEEEeCCCCcceEEEEe-------ccCCEEeccCCCceEcC-CCCeEEEEEecccCCCcceeEEEEEec
Confidence 7654 35799999988765432111 011222 3789999 5665554 44666 577787
Q ss_pred CC--c----------------ceeEcCCCCEEEEEeCC---CcEEEEeCCCC
Q 005646 516 GP--N----------------VIGKYKDGKHIVSAGED---SNVYMWNCIGH 546 (686)
Q Consensus 516 ~~--~----------------~~~~~~dg~~l~sgs~D---g~V~iWd~~~~ 546 (686)
.. . .++|+|||++|+..+.+ +.++||+++..
T Consensus 343 ~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 343 QPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp SCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred cCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 11 0 14689999999876655 78999998754
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-17 Score=175.14 Aligned_cols=258 Identities=9% Similarity=0.054 Sum_probs=185.3
Q ss_pred ceeeecCCCccceeec-------cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEE-EeCCCcEEEE
Q 005646 206 GERVRLNEEDAMFCSK-------VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLAS-AGDDGVVRLW 277 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~-------d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~I~vW 277 (686)
...++++++.+++++. ++.|.+||...... ...+. +...+..++|+|+|++|+. ...++.|.+|
T Consensus 45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-------~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-------TQAIH-NDLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-------EEEEE-ESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-------EEEEe-cCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 3567788887777663 67899998765432 11222 2345788999999996555 4557999999
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCe
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 357 (686)
|+.+++.+..+....... + -......+
T Consensus 117 d~~~~~~~~~~~~~~~~~--------------------------------------------------~---~~~~~~~~ 143 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKR--------------------------------------------------T---EEVRPLQP 143 (353)
T ss_dssp ETTTCCEEEEEESCCCCC--------------------------------------------------C---SSCCCCEE
T ss_pred eCCCCeeEEEEecCCCcc--------------------------------------------------c---cccCCCCC
Confidence 998887655443221100 0 00011236
Q ss_pred eEEEeeCCC-EEEEEE--CCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe
Q 005646 358 LDLSWSKNN-YLLSAS--IDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV 433 (686)
Q Consensus 358 ~~l~~s~~~-~L~s~s--~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~ 433 (686)
.+++|+|++ +|++++ .++.|.+||+.+++.+..+. +...+.+++|+| +++++++++.++.|.+||+.+++.+...
T Consensus 144 ~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~ 222 (353)
T 3vgz_A 144 RELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRK 222 (353)
T ss_dssp EEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred ceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEE
Confidence 789999998 666655 48899999999999999888 777799999999 9999999999999999999999887554
Q ss_pred c-----cCCcEEEEEEccCCCEEEEEec-CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE-EEe
Q 005646 434 D-----IRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM-VSC 506 (686)
Q Consensus 434 ~-----~~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~-~~s 506 (686)
. +...+..++|+|+|+++++++. ++.|.+||+.+++...... . ....++.|+| +++.++ +..
T Consensus 223 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~--------~~~~~~~~s~-dg~~l~v~~~ 291 (353)
T 3vgz_A 223 KLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA--A--------PESLAVLFNP-ARNEAYVTHR 291 (353)
T ss_dssp ECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE--C--------SSCCCEEEET-TTTEEEEEET
T ss_pred EcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE--c--------CCCceEEECC-CCCEEEEEEC
Confidence 4 3445788999999998777665 4899999998877643222 1 1125699999 566554 445
Q ss_pred CCCcEEEEeCCc--------------ceeEcCCCCEEEEEeCCC
Q 005646 507 ADSQVRILQGPN--------------VIGKYKDGKHIVSAGEDS 536 (686)
Q Consensus 507 ~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs~Dg 536 (686)
.++.|.+||..+ .++++|||++|+.+..++
T Consensus 292 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 292 QAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp TTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEECC
T ss_pred CCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEccc
Confidence 799999999753 256777888766665543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-18 Score=199.25 Aligned_cols=272 Identities=13% Similarity=0.114 Sum_probs=187.8
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeec-----
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE----- 281 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~----- 281 (686)
.+|+++ ..++.+ .++.|++|+...... ..+..|...+.+++|+|||++||++ .|+.|++|++.+
T Consensus 87 ~~~spd-~~~~~~-~~~~i~~~d~~~~~~--------~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 87 TLDAGR-GLVVLF-TQGGLVGFDMLARKV--------TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp EEETTT-TEEEEE-ETTEEEEEETTTTEE--------EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred EEECCC-CeEEEE-ECCEEEEEECCCCce--------EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence 456666 555444 569999999865422 2344567789999999999999995 679999999987
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
++........... + .. +.+ ..+.+...+.++.
T Consensus 156 g~~~~~~~~~~~~---~-----------------------------------~~--------g~~--~~~ee~~~~~~~~ 187 (706)
T 2z3z_A 156 SRAIAVTIDGTET---L-----------------------------------VY--------GQA--VHQREFGIEKGTF 187 (706)
T ss_dssp CCCEESCSCCBTT---E-----------------------------------EE--------SSC--CGGGCTTCCCSEE
T ss_pred CCcEEeccCCCCC---e-----------------------------------Ec--------ccc--hhhhhcCCCceEE
Confidence 6533221111000 0 00 000 1122345578999
Q ss_pred eeCCC-EEEEEE---------------------------------CCCcEEEEECCCCeeeeEe---eCCCCeEEEEEee
Q 005646 362 WSKNN-YLLSAS---------------------------------IDKTVRLWRVGNDHCLRVF---PHSNYVTCVHFNP 404 (686)
Q Consensus 362 ~s~~~-~L~s~s---------------------------------~Dg~V~iWd~~~~~~~~~~---~h~~~V~~v~fsp 404 (686)
|+|+| +|++++ .+..|++||+.+++..... .|...+.+++|+|
T Consensus 188 ~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 267 (706)
T 2z3z_A 188 WSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP 267 (706)
T ss_dssp ECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC
Confidence 99999 888887 4478999999999876554 3678899999999
Q ss_pred cCCCEEEEEEcCC-----cEEEEecCCC-cEEEEe--ccCC---cEEEEEEcc--CCCEEEEEecCCcEEEEeCC-CCee
Q 005646 405 VDDNYFISGSIDG-----KVRIWAVLSC-HVVDWV--DIRQ---IVTAVCYRP--DGQGGIVGSMMGDCRFYNVS-DNHL 470 (686)
Q Consensus 405 ~~~~~l~sgs~Dg-----~V~iwd~~~~-~~~~~~--~~~~---~V~~v~~sp--dg~~l~~gs~dg~i~iwd~~-~~~~ 470 (686)
++++|++++.++ .|++||+.++ ...... .... .+..++|+| ||+++++++.+|.++||++. ++..
T Consensus 268 -dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~ 346 (706)
T 2z3z_A 268 -DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL 346 (706)
T ss_dssp -TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE
T ss_pred -CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCE
Confidence 999999988876 8999999998 443333 2222 246789999 99999999999999999875 3322
Q ss_pred eeeeeEEeeccccCCCCCeEE-EEEeCCCCCeEEEEe-CCC----cEEEEeCCc-------------ceeEcCCCCEEEE
Q 005646 471 ELDAEICVHSKKKAPCKRITG-FQFLPQDSSKVMVSC-ADS----QVRILQGPN-------------VIGKYKDGKHIVS 531 (686)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~I~~-l~fsp~~~~~l~~~s-~D~----~I~iwd~~~-------------~~~~~~dg~~l~s 531 (686)
.. . ...+...+.. +.|+| +++.|++++ .++ .|..||..+ .++++|||++|+.
T Consensus 347 ~~----~----l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~ 417 (706)
T 2z3z_A 347 IR----Q----VTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIID 417 (706)
T ss_dssp EE----E----CCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEE
T ss_pred EE----e----cCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEE
Confidence 11 1 1223455766 79999 666665544 444 566666432 3678999999987
Q ss_pred EeCC----CcEEEEeCCCCC
Q 005646 532 AGED----SNVYMWNCIGHE 547 (686)
Q Consensus 532 gs~D----g~V~iWd~~~~~ 547 (686)
...+ +.|++||+.+++
T Consensus 418 ~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 418 IFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEECSSCSCEEEEEESSSCE
T ss_pred EecCCCCCcEEEEEECCCCe
Confidence 6544 569999998765
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-17 Score=171.28 Aligned_cols=254 Identities=13% Similarity=0.175 Sum_probs=175.7
Q ss_pred eccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC----CcEEEEEeecC--eeeeeeccCCC
Q 005646 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD----GVVRLWQVVED--ERLTEVDIPEI 293 (686)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----g~I~vWd~~~~--~~~~~~~~~~~ 293 (686)
+.++.|.+|.++.....+..+ ..+ |...+..++|+|||++|++++.+ +.|.+|++... +. .
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~---~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~-~------- 90 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPL---SDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL-H------- 90 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEE---EEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE-E-------
T ss_pred CCCCCEEEEEEeCCCCCEEEe---ecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE-E-------
Confidence 346789999886544333222 122 67788899999999999999886 79999998763 21 0
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s 372 (686)
.+.....+......+++ ++ +|++++
T Consensus 91 ----------------------------------------------------~~~~~~~~~~~p~~~~~--dg~~l~~~~ 116 (361)
T 3scy_A 91 ----------------------------------------------------LLNTQKTMGADPCYLTT--NGKNIVTAN 116 (361)
T ss_dssp ----------------------------------------------------EEEEEECSSSCEEEEEE--CSSEEEEEE
T ss_pred ----------------------------------------------------EeeEeccCCCCcEEEEE--CCCEEEEEE
Confidence 12222334456677777 55 666665
Q ss_pred -CCCcEEEEECCCCeeeeEe----eC-----------CCCeEEEEEeecCCCEEEEEE-cCCcEEEEecCCCc-------
Q 005646 373 -IDKTVRLWRVGNDHCLRVF----PH-----------SNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCH------- 428 (686)
Q Consensus 373 -~Dg~V~iWd~~~~~~~~~~----~h-----------~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~~~------- 428 (686)
.+++|.+|++.....+..+ .+ ...+.+++|+| +++++++++ .++.|++|++....
T Consensus 117 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~ 195 (361)
T 3scy_A 117 YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEK 195 (361)
T ss_dssp TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCC
T ss_pred CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccc
Confidence 6889999999765433221 12 23468899999 898666655 48899999887533
Q ss_pred E-------EEEeccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCC
Q 005646 429 V-------VDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (686)
Q Consensus 429 ~-------~~~~~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~ 500 (686)
+ .........+..++|+|||+++++++ .++.|.+|++.++.+.....+. ....+.....+++|+| +++
T Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~---~~~~~~~~~~~i~~sp-dg~ 271 (361)
T 3scy_A 196 FLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA---ADTVNAQGSGDIHLSP-DGK 271 (361)
T ss_dssp CEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE---SCSSCCCCEEEEEECT-TSS
T ss_pred eeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe---cCCCCCCCcccEEECC-CCC
Confidence 1 12233455688999999999887777 6899999999877654322221 1222345578999999 777
Q ss_pred eEEEEeC--CCcEEEEeCC------------------cceeEcCCCCEEEEEe-CCCcEEEEeCCC
Q 005646 501 KVMVSCA--DSQVRILQGP------------------NVIGKYKDGKHIVSAG-EDSNVYMWNCIG 545 (686)
Q Consensus 501 ~l~~~s~--D~~I~iwd~~------------------~~~~~~~dg~~l~sgs-~Dg~V~iWd~~~ 545 (686)
+|+++.. ++.|.+|+.. ..++++|||++|++++ .++.|.+|+++.
T Consensus 272 ~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 272 YLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred EEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 7766655 5899999863 2356889999999888 678999976653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-17 Score=174.39 Aligned_cols=222 Identities=14% Similarity=0.169 Sum_probs=162.3
Q ss_pred EEeeCCC-EEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEe
Q 005646 257 KFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVF 335 (686)
Q Consensus 257 ~fspdg~-~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (686)
.|.++++ .+++++.++.|++||+.+++.+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~----------------------------------------------- 36 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI----------------------------------------------- 36 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-----------------------------------------------
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeE-----------------------------------------------
Confidence 4555555 4778888999999999887643222
Q ss_pred CCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC-CCcEEEEECCCCee-eeEee-CCCCeEEEEEeecCCCEEE
Q 005646 336 PPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-DKTVRLWRVGNDHC-LRVFP-HSNYVTCVHFNPVDDNYFI 411 (686)
Q Consensus 336 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~-Dg~V~iWd~~~~~~-~~~~~-h~~~V~~v~fsp~~~~~l~ 411 (686)
..+...+ .++|+|++ +|++++. ++.|.+||+.+++. ...+. +..+..+++|+| ++++++
T Consensus 37 ---------------~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~ 99 (331)
T 3u4y_A 37 ---------------TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAV 99 (331)
T ss_dssp ---------------ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEE
T ss_pred ---------------EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEE
Confidence 2234455 99999999 6666655 89999999999987 66666 445554599999 999998
Q ss_pred EEEcCC---cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEE-ecCCc-EEEEeCCCCeeeeeeeEEeeccccCCC
Q 005646 412 SGSIDG---KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG-SMMGD-CRFYNVSDNHLELDAEICVHSKKKAPC 486 (686)
Q Consensus 412 sgs~Dg---~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~g-s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~ 486 (686)
++..++ .|++||+.+++.+........+..++|+|||++++++ ..++. |.+|++............ .....
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~----~~~~~ 175 (331)
T 3u4y_A 100 TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE----FISGG 175 (331)
T ss_dssp ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE----EECSS
T ss_pred EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc----cccCC
Confidence 655553 8999999999988777777778999999999866655 45588 999999865433222111 11233
Q ss_pred CCeEEEEEeCCCCCeE-EEEeCCCcEEEEeCCc-----------------ceeEcCCCCEEEEEe-CCCcEEEEeCCCCC
Q 005646 487 KRITGFQFLPQDSSKV-MVSCADSQVRILQGPN-----------------VIGKYKDGKHIVSAG-EDSNVYMWNCIGHE 547 (686)
Q Consensus 487 ~~I~~l~fsp~~~~~l-~~~s~D~~I~iwd~~~-----------------~~~~~~dg~~l~sgs-~Dg~V~iWd~~~~~ 547 (686)
..+.+++|+| +++.+ ++...++.|++||..+ .++++|||++|+.++ .++.|.+||+.+++
T Consensus 176 ~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 176 TRPFNITFTP-DGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGT 254 (331)
T ss_dssp SSEEEEEECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred CCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence 5589999999 66654 5555789999999642 256888999777665 57889999998865
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-18 Score=194.83 Aligned_cols=254 Identities=9% Similarity=0.052 Sum_probs=188.3
Q ss_pred ceeeecCCCccceeec-cceEEEEEcCCccccccccccCceecccC-CceEEEEEeeCCCEEEEEeC---CCcEEEEEee
Q 005646 206 GERVRLNEEDAMFCSK-VQRVKVYHCKKRSKELSALYKGQEIQAHD-GSILTMKFSPDGQYLASAGD---DGVVRLWQVV 280 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~-d~~v~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~---Dg~I~vWd~~ 280 (686)
...++++|+.+++++. +++++||++.... . ..+..|. ..|..++|+|| +++++++. +...+||.+.
T Consensus 26 ~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--~------~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 26 SLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--T------VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp EEEEEETTTEEEEEEEETTEEEEEEEETTE--E------EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred eeecCCCCCeEEEEEccCCceeEEEEcCCC--c------EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 4578899999999887 9999999974321 1 2344455 68999999999 88888775 5667887775
Q ss_pred c--CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 281 E--DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 281 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
. .... ..+..+ ..+.
T Consensus 97 ~~~~g~~--------------------------------------------------------------~~l~~~-~~~~ 113 (582)
T 3o4h_A 97 TSRPGEE--------------------------------------------------------------QRLEAV-KPMR 113 (582)
T ss_dssp TTSTTCC--------------------------------------------------------------EECTTS-CSBE
T ss_pred ccCCCcc--------------------------------------------------------------ccccCC-CCce
Confidence 4 2100 011111 1233
Q ss_pred EEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC----CcEEEEecCCCcEEEE
Q 005646 359 DLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID----GKVRIWAVLSCHVVDW 432 (686)
Q Consensus 359 ~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D----g~V~iwd~~~~~~~~~ 432 (686)
..+|+|++ .+++++.++.+.+||+.++++.....+.. .+++|+| |+++|++++.+ +.|++||+.+++...+
T Consensus 114 ~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l 190 (582)
T 3o4h_A 114 ILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF 190 (582)
T ss_dssp EEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCEEE
T ss_pred eeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCceEe
Confidence 55777776 44455555556699999998877666544 8999999 99999988877 7899999999998888
Q ss_pred eccCCcEEEEEEccCCCEEEEEecCC--cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE--------EeCCCCCeE
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGSMMG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ--------FLPQDSSKV 502 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~--------fsp~~~~~l 502 (686)
..+...+..++|+|||+.|+++..+| .|++||+.+++... ...+...+..+. |+| ++.++
T Consensus 191 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~sp-dg~~~ 260 (582)
T 3o4h_A 191 DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVED---------LELPSKDFSSYRPTAITWLGYLP-DGRLA 260 (582)
T ss_dssp CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEE---------CCCSCSHHHHHCCSEEEEEEECT-TSCEE
T ss_pred ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEE---------ccCCCcChhhhhhccccceeEcC-CCcEE
Confidence 88888899999999999999888888 89999998876541 122334455555 999 55888
Q ss_pred EEEeCCCcEEEEeCC----------cceeEcCCCCEEEEEeCCCc---EEEEeCCC
Q 005646 503 MVSCADSQVRILQGP----------NVIGKYKDGKHIVSAGEDSN---VYMWNCIG 545 (686)
Q Consensus 503 ~~~s~D~~I~iwd~~----------~~~~~~~dg~~l~sgs~Dg~---V~iWd~~~ 545 (686)
++++.|+.+++|+.- ..++++ +++++++++.+.+ |++|+..+
T Consensus 261 ~~~~~~g~~~l~~~g~~~~~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 261 VVARREGRSAVFIDGERVEAPQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEETTEEEEEETTEEECCCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEcCCcEEEEEECCeeccCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 999999999999861 135677 9999999888754 77777654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.3e-19 Score=190.05 Aligned_cols=196 Identities=17% Similarity=0.141 Sum_probs=140.1
Q ss_pred CCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCC
Q 005646 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (686)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (686)
...+..+++++++.+|++++.|+ ++||+....... ........
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~---~~~~~~~~--------------------------------- 78 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ---NKPGDDPN--------------------------------- 78 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC---CCTTCCTT---------------------------------
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh---cccccCcc---------------------------------
Confidence 34688999999999999999988 999886532110 00000000
Q ss_pred ceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE----EEECCCcEEEEECCCC--------ee---eeEee-
Q 005646 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL----SASIDKTVRLWRVGND--------HC---LRVFP- 392 (686)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~----s~s~Dg~V~iWd~~~~--------~~---~~~~~- 392 (686)
.... ..+... ..|...|.+++|+|++ +|+ +++.|++|+|||+.++ ++ +..+.
T Consensus 79 -~~~~---------~~~~~~-~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 147 (434)
T 2oit_A 79 -KIVD---------KVQGLL-VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD 147 (434)
T ss_dssp -CEEE---------CCCCEE-ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS
T ss_pred -cccc---------cCcccc-ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCC
Confidence 0000 001111 2367889999999999 888 7889999999998754 22 23333
Q ss_pred CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee
Q 005646 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 393 h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
|...|++++|+|.++++|++++.||+|++||++++..+ ....|...|++++|+|+|++|++|+.||+|++||++ ++..
T Consensus 148 h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~ 226 (434)
T 2oit_A 148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK 226 (434)
T ss_dssp GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE
T ss_pred CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc
Confidence 89999999999944899999999999999999988655 455678899999999999999999999999999998 3322
Q ss_pred eeeeEEeeccc-cCCCCCeEEEEEeC
Q 005646 472 LDAEICVHSKK-KAPCKRITGFQFLP 496 (686)
Q Consensus 472 ~~~~~~~~~~~-~~~~~~I~~l~fsp 496 (686)
. .+..+... ..|...|.++.|++
T Consensus 227 ~--~~~~~~~~~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 227 K--VIPCPPFYESDHPVRVLDVLWIG 250 (434)
T ss_dssp E--EECCCTTCCTTSCEEEEEEEEEE
T ss_pred c--cccCCcccCCCCceeEEEEEEec
Confidence 1 11111111 12334789999998
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-18 Score=197.59 Aligned_cols=262 Identities=11% Similarity=0.124 Sum_probs=177.3
Q ss_pred CCccceeeccceEEEEEcCCccccccccccCcee-----------cccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeec
Q 005646 213 EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEI-----------QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE 281 (686)
Q Consensus 213 ~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l-----------~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~ 281 (686)
++.+++++.++ | +||..+.......+.....+ +.+...|.+++|+|| ++|+.+. |+.|++||+.+
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~ 110 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLA 110 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEEEEETTT
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEEEECCC
Confidence 56667777777 8 99987654300111111000 112257999999999 6665553 59999999987
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
++.. .+..+...+.+++
T Consensus 111 ~~~~---------------------------------------------------------------~l~~~~~~~~~~~ 127 (706)
T 2z3z_A 111 RKVT---------------------------------------------------------------YLFDTNEETASLD 127 (706)
T ss_dssp TEEE---------------------------------------------------------------EEECCTTCCTTCE
T ss_pred CceE---------------------------------------------------------------EccCCcccccCCc
Confidence 6521 2223556788899
Q ss_pred eeCCC-EEEEEECCCcEEEEECCC-----CeeeeEee-CCCC--------------eEEEEEeecCCCEEEEEE------
Q 005646 362 WSKNN-YLLSASIDKTVRLWRVGN-----DHCLRVFP-HSNY--------------VTCVHFNPVDDNYFISGS------ 414 (686)
Q Consensus 362 ~s~~~-~L~s~s~Dg~V~iWd~~~-----~~~~~~~~-h~~~--------------V~~v~fsp~~~~~l~sgs------ 414 (686)
|+|+| +|+++ .|+.|++||+.+ ++...... +... +.+++|+| |+++|++++
T Consensus 128 ~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~ 205 (706)
T 2z3z_A 128 FSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMV 205 (706)
T ss_dssp ECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTS
T ss_pred CCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCC
Confidence 99999 77774 689999999998 77665444 2222 58999999 999999998
Q ss_pred ---------------------------cCCcEEEEecCCCcEEEEe---ccCCcEEEEEEccCCCEEEEEecCC-----c
Q 005646 415 ---------------------------IDGKVRIWAVLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSMMG-----D 459 (686)
Q Consensus 415 ---------------------------~Dg~V~iwd~~~~~~~~~~---~~~~~V~~v~~spdg~~l~~gs~dg-----~ 459 (686)
.+..|++||+.+++..... .+...+..++|+|||+.|++++.++ .
T Consensus 206 ~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 285 (706)
T 2z3z_A 206 KPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECK 285 (706)
T ss_dssp CCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEE
T ss_pred ceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeE
Confidence 4467999999998866443 3556799999999999999988776 8
Q ss_pred EEEEeCCCC-eeeeeeeEEeeccccCCCCCeEEEEEeC-CCCCeEEEEeCCCcEEEEeCC----------------c-ce
Q 005646 460 CRFYNVSDN-HLELDAEICVHSKKKAPCKRITGFQFLP-QDSSKVMVSCADSQVRILQGP----------------N-VI 520 (686)
Q Consensus 460 i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~I~~l~fsp-~~~~~l~~~s~D~~I~iwd~~----------------~-~~ 520 (686)
|++||+.++ ....... .........+..+.|+| .++++++++..|+.++||... . .+
T Consensus 286 v~~~d~~~g~~~~~~~~----~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~ 361 (706)
T 2z3z_A 286 VNAYDAETGRFVRTLFV----ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFA 361 (706)
T ss_dssp EEEEETTTCCEEEEEEE----EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEE
T ss_pred EEEEECCCCceeeEEEE----ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeee
Confidence 999999987 3322111 11111112346789998 245688888889988888532 1 15
Q ss_pred eEcCCCCEEEEEeCC-C----cEEEEeCCCCC
Q 005646 521 GKYKDGKHIVSAGED-S----NVYMWNCIGHE 547 (686)
Q Consensus 521 ~~~~dg~~l~sgs~D-g----~V~iWd~~~~~ 547 (686)
+++|||+.|+.++.+ + .|+.|++.++.
T Consensus 362 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 362 GFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp EECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred EEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 789999988766544 4 66777776643
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-17 Score=174.14 Aligned_cols=188 Identities=19% Similarity=0.213 Sum_probs=141.8
Q ss_pred CCCCeeEEEeeCCC-EEEEEECC-CcEEEEECC--CCe--eeeEeeCCCCeEEEEEeecCCCEEEEEEc-CCcEEEEec-
Q 005646 353 HSGEILDLSWSKNN-YLLSASID-KTVRLWRVG--NDH--CLRVFPHSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAV- 424 (686)
Q Consensus 353 h~~~V~~l~~s~~~-~L~s~s~D-g~V~iWd~~--~~~--~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~- 424 (686)
|...+.+++|+|++ +|++++.+ +.|++|++. +++ .+..+.....+.+++|+| ++++|++++. ++.|++||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcC-CCCEEEEEecCCCeEEEEECC
Confidence 66778899999999 78888876 999999998 554 344555445899999999 8887777665 889999999
Q ss_pred --CCCcEEEEeccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCC-CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCC
Q 005646 425 --LSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (686)
Q Consensus 425 --~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~ 500 (686)
.+.+.+........+.+++|+|+|+++++++ .++.|++||+.+ +++........ .......+.+++|+| ++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p-dg~ 190 (343)
T 1ri6_A 115 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV---TTVEGAGPRHMVFHP-NEQ 190 (343)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE---ECSTTCCEEEEEECT-TSS
T ss_pred CCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc---ccCCCCCcceEEECC-CCC
Confidence 4444555555666789999999999888877 899999999987 54432210011 112235688999999 666
Q ss_pred eEE-EEeCCCcEEEEeCCc-------------------------ceeEcCCCCEEEE-EeCCCcEEEEeCCC
Q 005646 501 KVM-VSCADSQVRILQGPN-------------------------VIGKYKDGKHIVS-AGEDSNVYMWNCIG 545 (686)
Q Consensus 501 ~l~-~~s~D~~I~iwd~~~-------------------------~~~~~~dg~~l~s-gs~Dg~V~iWd~~~ 545 (686)
.++ ++..++.|++|+... .++++|+|++|+. +..|+.|++|++..
T Consensus 191 ~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 191 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 555 445889999999631 2778899998875 45799999999974
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-17 Score=168.34 Aligned_cols=226 Identities=12% Similarity=0.081 Sum_probs=164.1
Q ss_pred ceeeecCCCccceeeccceEEEEEcCC-ccccccccccCceeccc-CCceEEEEEeeCCCEEEEEe--CCCcEEEEEeec
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKK-RSKELSALYKGQEIQAH-DGSILTMKFSPDGQYLASAG--DDGVVRLWQVVE 281 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~-~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~Lasgs--~Dg~I~vWd~~~ 281 (686)
...++++++++++++ ++.|.+|+... .... ..+.+| ...|.+++|+|+|++|++++ .++.++||.+..
T Consensus 46 ~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~-------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~ 117 (297)
T 2ojh_A 46 APNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE-------KVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPS 117 (297)
T ss_dssp EEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-------ECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEET
T ss_pred eeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-------EeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEEC
Confidence 456788888888876 78999999876 4321 122334 47889999999999999999 446777777653
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
.. .....+..+ ..+..++
T Consensus 118 ~~-------------------------------------------------------------~~~~~~~~~-~~~~~~~ 135 (297)
T 2ojh_A 118 TG-------------------------------------------------------------GTPRLMTKN-LPSYWHG 135 (297)
T ss_dssp TC-------------------------------------------------------------CCCEECCSS-SSEEEEE
T ss_pred CC-------------------------------------------------------------CceEEeecC-CCccceE
Confidence 21 011122222 2488899
Q ss_pred eeCCC-EEE-EEECCCcEEEEEC--CCCeeeeEeeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecC--CCcEEEEec
Q 005646 362 WSKNN-YLL-SASIDKTVRLWRV--GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVL--SCHVVDWVD 434 (686)
Q Consensus 362 ~s~~~-~L~-s~s~Dg~V~iWd~--~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~--~~~~~~~~~ 434 (686)
|+|++ +|+ +++.|+.++||++ .+++......+...+.+++|+| ++++|+.++ .++.++||++. .+....+..
T Consensus 136 ~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 214 (297)
T 2ojh_A 136 WSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITD 214 (297)
T ss_dssp ECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred ECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence 99999 555 7888999999985 4455544445888999999999 888877766 58999999875 445555666
Q ss_pred cCCcEEEEEEccCCCEEEEEecC-----------CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMM-----------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
+...+..++|+|+|++|++++.+ +.|++||+.+++....... ..|...+..++|+| +++.|+
T Consensus 215 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~~sp-dg~~l~ 287 (297)
T 2ojh_A 215 SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL------FGGQGTMNSPNWSP-DGDEFA 287 (297)
T ss_dssp CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE------EESTTTSCSCCBCT-TSSEEE
T ss_pred CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc------CCCCcccccceECC-CCCEEE
Confidence 77789999999999999988776 5699999988764332211 12446688899999 777777
Q ss_pred EEeCCC
Q 005646 504 VSCADS 509 (686)
Q Consensus 504 ~~s~D~ 509 (686)
+++.+.
T Consensus 288 ~~~~~~ 293 (297)
T 2ojh_A 288 YVRYFP 293 (297)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 776653
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-18 Score=176.36 Aligned_cols=177 Identities=8% Similarity=-0.014 Sum_probs=133.8
Q ss_pred CeeEEEeeCCC-EE-EEEECCCcEEEEECCCCeeeeEeeCCC------CeEEEEEeecCCCEEEEEE------------c
Q 005646 356 EILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHSN------YVTCVHFNPVDDNYFISGS------------I 415 (686)
Q Consensus 356 ~V~~l~~s~~~-~L-~s~s~Dg~V~iWd~~~~~~~~~~~h~~------~V~~v~fsp~~~~~l~sgs------------~ 415 (686)
.+..++|+|++ +| ++++.++.|.+||+.+++.+..+.... .+.+++|+| ++++|++++ .
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEEC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEeccccccccccccc
Confidence 36789999999 55 556668999999999999888776433 788999999 998888886 5
Q ss_pred CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEe
Q 005646 416 DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (686)
Q Consensus 416 Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fs 495 (686)
++.|++||+.+++.+........+..++|+|+|++++++ ++.|++||+.+++...... . .....+ +.|+
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~--~----~~~~~~---~~~s 182 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKP--I----QSWEAE---TYAQ 182 (337)
T ss_dssp CCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEEC--S----TTTTTT---TBCC
T ss_pred CceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeee--c----cccCCC---ceeC
Confidence 799999999999888776667778899999999988888 6899999999887543211 1 010112 2677
Q ss_pred CCCCCeEEEEeC-CC-----------------------cEEEEeCCc----------------ceeEcCCCCEEEEEeCC
Q 005646 496 PQDSSKVMVSCA-DS-----------------------QVRILQGPN----------------VIGKYKDGKHIVSAGED 535 (686)
Q Consensus 496 p~~~~~l~~~s~-D~-----------------------~I~iwd~~~----------------~~~~~~dg~~l~sgs~D 535 (686)
| ++..+++.+. ++ .|.+||..+ .++++|||++|+++ +
T Consensus 183 ~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~ 259 (337)
T 1pby_B 183 P-DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--Y 259 (337)
T ss_dssp C-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--E
T ss_pred C-CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--C
Confidence 7 4444444332 22 467888654 27899999999988 7
Q ss_pred CcEEEEeCCCCC
Q 005646 536 SNVYMWNCIGHE 547 (686)
Q Consensus 536 g~V~iWd~~~~~ 547 (686)
+.|++||+.+++
T Consensus 260 ~~v~~~d~~~~~ 271 (337)
T 1pby_B 260 NVLESFDLEKNA 271 (337)
T ss_dssp SEEEEEETTTTE
T ss_pred CeEEEEECCCCc
Confidence 999999998754
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.7e-18 Score=196.21 Aligned_cols=224 Identities=13% Similarity=0.129 Sum_probs=162.7
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCce
Q 005646 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (686)
.+.+++|+|||+++++ +.||+|++||+.+++..
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~---------------------------------------------- 50 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST---------------------------------------------- 50 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE----------------------------------------------
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE----------------------------------------------
Confidence 4678999999998877 78999999999887632
Q ss_pred EEEeCCccccccCCCeEEeccCCC---CeeEEEeeCCC-EEEEEECC---------CcEEEEECCCCeeeeEee---CCC
Q 005646 332 CVVFPPKVFRILEKPLHEFHGHSG---EILDLSWSKNN-YLLSASID---------KTVRLWRVGNDHCLRVFP---HSN 395 (686)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~h~~---~V~~l~~s~~~-~L~s~s~D---------g~V~iWd~~~~~~~~~~~---h~~ 395 (686)
..+.+|.. .|.+++|||+| +|++++.+ +.|.+||+.++++..... |..
T Consensus 51 ----------------~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 114 (723)
T 1xfd_A 51 ----------------VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA 114 (723)
T ss_dssp ----------------EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred ----------------EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccc
Confidence 22233433 48999999999 88888775 778899999987632222 445
Q ss_pred CeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc-CCc------------------EEEEEEccCCCEEEEEec
Q 005646 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-RQI------------------VTAVCYRPDGQGGIVGSM 456 (686)
Q Consensus 396 ~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-~~~------------------V~~v~~spdg~~l~~gs~ 456 (686)
.+..++|+| ++++|+.++. +.|++||+.+++...+... ... +.+++|+|||+.|++++.
T Consensus 115 ~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~ 192 (723)
T 1xfd_A 115 KLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI 192 (723)
T ss_dssp CCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred cccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEE
Confidence 589999999 9999999885 7999999999877655432 222 378999999999999876
Q ss_pred CC----------------------------------cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE
Q 005646 457 MG----------------------------------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (686)
Q Consensus 457 dg----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l 502 (686)
++ .|++||+.+++.... +........+...+..++|+| +++.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~--l~~~~~~~~~~~~~~~~~~Sp-Dg~~l 269 (723)
T 1xfd_A 193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLE--MMPPDDPRMREYYITMVKWAT-STKVA 269 (723)
T ss_dssp ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEE--CCCCCCGGGSSEEEEEEEESS-SSEEE
T ss_pred CCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEE--eeCCccCCCccceeEEEEEeC-CCeEE
Confidence 53 789999887763211 111111112345689999999 77777
Q ss_pred EEEeC----CCcEEEEeCCc--------------------ceeEcCCCCEEEE--EeCCC------cEEEEeC
Q 005646 503 MVSCA----DSQVRILQGPN--------------------VIGKYKDGKHIVS--AGEDS------NVYMWNC 543 (686)
Q Consensus 503 ~~~s~----D~~I~iwd~~~--------------------~~~~~~dg~~l~s--gs~Dg------~V~iWd~ 543 (686)
++... +..|++||..+ .+.|+|||++|+. +..|+ .|++||+
T Consensus 270 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~ 342 (723)
T 1xfd_A 270 VTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSS 342 (723)
T ss_dssp EEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECS
T ss_pred EEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEec
Confidence 66643 35788898531 4568899997775 45677 5777773
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-17 Score=184.45 Aligned_cols=219 Identities=11% Similarity=0.077 Sum_probs=164.3
Q ss_pred cCCceEEEEEeeCCCEEEEEeC-CCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeecc
Q 005646 249 HDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~-Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (686)
+..+|++++|+|||++||+++. ||+++||++.+++.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~------------------------------------------- 56 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET------------------------------------------- 56 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-------------------------------------------
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-------------------------------------------
Confidence 3568999999999999999887 99999999866542
Q ss_pred CCceEEEeCCccccccCCCeEEeccCC-CCeeEEEeeCCCEEEEEEC---CCcEEEEECCC--CeeeeEeeCCCCeEEEE
Q 005646 328 SESACVVFPPKVFRILEKPLHEFHGHS-GEILDLSWSKNNYLLSASI---DKTVRLWRVGN--DHCLRVFPHSNYVTCVH 401 (686)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~s~~~~L~s~s~---Dg~V~iWd~~~--~~~~~~~~h~~~V~~v~ 401 (686)
..+..|. ..+..++|+|+.++++++. +...+||.+.. ......+.....+...+
T Consensus 57 --------------------~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~ 116 (582)
T 3o4h_A 57 --------------------VKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILS 116 (582)
T ss_dssp --------------------EECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBEEEE
T ss_pred --------------------EeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccccccCCCCceeee
Confidence 2222344 6889999999865666664 55667765543 22222444334456778
Q ss_pred EeecCCC-EEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecC----CcEEEEeCCCCeeeeeeeE
Q 005646 402 FNPVDDN-YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM----GDCRFYNVSDNHLELDAEI 476 (686)
Q Consensus 402 fsp~~~~-~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~d----g~i~iwd~~~~~~~~~~~~ 476 (686)
|+| +++ .+++.+.++.+.+||+.+++...+..+.. .+++|+|||++|++++.+ +.|++||+.+++...
T Consensus 117 ~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~---- 189 (582)
T 3o4h_A 117 GVD-TGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV---- 189 (582)
T ss_dssp EEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE----
T ss_pred eCC-CCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE----
Confidence 999 664 44444555566699999998776665555 789999999999988777 789999998876532
Q ss_pred EeeccccCCCCCeEEEEEeCCCCCeEEEEeCCC--cEEEEeCCc--------------cee--------EcCCCCEEEEE
Q 005646 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS--QVRILQGPN--------------VIG--------KYKDGKHIVSA 532 (686)
Q Consensus 477 ~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~--~I~iwd~~~--------------~~~--------~~~dg~~l~sg 532 (686)
...+...+..++|+| +++.|+++..++ .|++||..+ .+. |+|||++++++
T Consensus 190 -----l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~ 263 (582)
T 3o4h_A 190 -----FDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVA 263 (582)
T ss_dssp -----ECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEE
T ss_pred -----eecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEE
Confidence 123446689999999 888888888888 899998643 245 99999999999
Q ss_pred eCCCcEEEEeC
Q 005646 533 GEDSNVYMWNC 543 (686)
Q Consensus 533 s~Dg~V~iWd~ 543 (686)
+.|++++||++
T Consensus 264 ~~~g~~~l~~~ 274 (582)
T 3o4h_A 264 RREGRSAVFID 274 (582)
T ss_dssp EETTEEEEEET
T ss_pred EcCCcEEEEEE
Confidence 99999999999
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-17 Score=171.17 Aligned_cols=264 Identities=9% Similarity=0.057 Sum_probs=167.3
Q ss_pred eeecCCCccceeeccceEEEEEcCCccccccccccCceecccC-CceEEEEEeeCCCEEE-EEeCCCcEEEEEeecCeee
Q 005646 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHD-GSILTMKFSPDGQYLA-SAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 208 ~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~La-sgs~Dg~I~vWd~~~~~~~ 285 (686)
.++.++..+++++.++.|.+||...... .+.+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.+
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~-------~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTV-------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT 78 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEE-------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcE-------EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence 4556677889999999999999865422 12222222 2578999999998665 5557899999999888754
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
..+..... + ..+...+..++|+|+
T Consensus 79 ~~~~~~~~----------------------------------------------------~----~~~~~~~~~~~~spd 102 (349)
T 1jmx_B 79 FHANLSSV----------------------------------------------------P----GEVGRSMYSFAISPD 102 (349)
T ss_dssp EEEESCCS----------------------------------------------------T----TEEEECSSCEEECTT
T ss_pred EEEEcccc----------------------------------------------------c----ccccccccceEECCC
Confidence 43321100 0 001234678999999
Q ss_pred C-EEEEEECC------------CcEEEEECCCCe---eeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE
Q 005646 366 N-YLLSASID------------KTVRLWRVGNDH---CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 366 ~-~L~s~s~D------------g~V~iWd~~~~~---~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
+ +|++++.+ +.|.+||+.+++ .+..+.+...+.+++|+| +++ +++++ +.|++||+.+++.
T Consensus 103 g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~~ 178 (349)
T 1jmx_B 103 GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-DGS-LYVAG--PDIYKMDVKTGKY 178 (349)
T ss_dssp SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-TSC-EEEES--SSEEEECTTTCCE
T ss_pred CCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECC-CCc-EEEcc--CcEEEEeCCCCce
Confidence 9 88887755 899999998843 445556667899999999 888 55543 4599999999887
Q ss_pred EEEeccCC-------------------------cEEEEEEccCCCEEEEEecCC-cEEEEeCCCCeeeeeeeEEeecccc
Q 005646 430 VDWVDIRQ-------------------------IVTAVCYRPDGQGGIVGSMMG-DCRFYNVSDNHLELDAEICVHSKKK 483 (686)
Q Consensus 430 ~~~~~~~~-------------------------~V~~v~~spdg~~l~~gs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~ 483 (686)
+....... ....+++++++.......... .+..+|..+++..... ...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--- 252 (349)
T 1jmx_B 179 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE---FAD--- 252 (349)
T ss_dssp EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE---EEE---
T ss_pred eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc---ccc---
Confidence 75544332 344566665542111000000 1111333333322111 100
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc--------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+...+.+++|+|.+++.++++ ++.|.+||..+ .++++++|++|++++.++.|++||+.+++
T Consensus 253 -~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 253 -LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp -CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred -CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 224577888888444555555 77888887542 35677799999888889999999998765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-16 Score=166.94 Aligned_cols=257 Identities=11% Similarity=0.030 Sum_probs=170.6
Q ss_pred ceEEEEEcCCccccccccccCcee-cccCCceEEEEEeeCCCEEEEEeCCCcEEEEEee-cCeeeeeeccCCCCCcceEE
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEI-QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV-EDERLTEVDIPEIDPSCIYF 300 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~-~~~~~~~~~~~~~~~~~~~~ 300 (686)
+.|.+|+++.....+..+. .. .++...+..++|+|+|++|++++.+ .|.+|++. +++......
T Consensus 14 ~~i~~~~~d~~~g~l~~~~---~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~----------- 78 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIK---RTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS----------- 78 (365)
T ss_dssp CEEEEEEEETTTTEEEEEE---EEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE-----------
T ss_pred CcEEEEEEECCCCCEEEee---EEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE-----------
Confidence 4688877654333222111 11 1234568899999999999999988 99999997 665321110
Q ss_pred eecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-E--EEEEE-----
Q 005646 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-Y--LLSAS----- 372 (686)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~--L~s~s----- 372 (686)
...+ +.+.+++|+|+| + ++++.
T Consensus 79 -------------------------------------------------~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~ 108 (365)
T 1jof_A 79 -------------------------------------------------HPIG-GHPRANDADTNTRAIFLLAAKQPPYA 108 (365)
T ss_dssp -------------------------------------------------EECC-SSGGGGCTTSCCEEEEEEECSSTTCC
T ss_pred -------------------------------------------------eecC-CCCccEEECCCCCEEEEEEecCCcce
Confidence 0011 124458889999 3 33442
Q ss_pred --------CCCcEEEEECC-CCeeeeEee-----CCCCeEEEEEeecCCCEEEEEEc-CCcEEEEecC-CCcEEE--Eec
Q 005646 373 --------IDKTVRLWRVG-NDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVL-SCHVVD--WVD 434 (686)
Q Consensus 373 --------~Dg~V~iWd~~-~~~~~~~~~-----h~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~~-~~~~~~--~~~ 434 (686)
.++++.+|++. .++....+. +...+.+++|+| ++++|+++.. ++.|++||+. +++... ...
T Consensus 109 ~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 187 (365)
T 1jof_A 109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVD 187 (365)
T ss_dssp EEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred eccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe
Confidence 68999999997 455543332 457899999999 9998887764 6799999998 776532 222
Q ss_pred ---cCCcEEEEEEccCCCEEEEEec-CCcEEEEeCC--CCeeeee-eeEEee-ccccCCCC------CeEEEE-EeCCCC
Q 005646 435 ---IRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVS--DNHLELD-AEICVH-SKKKAPCK------RITGFQ-FLPQDS 499 (686)
Q Consensus 435 ---~~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~--~~~~~~~-~~~~~~-~~~~~~~~------~I~~l~-fsp~~~ 499 (686)
+...+..++|+|||+++++++. ++.|.+|++. ++++... ..+... .....+.. .+.+++ |+| ++
T Consensus 188 ~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG 266 (365)
T 1jof_A 188 APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SG 266 (365)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TS
T ss_pred cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CC
Confidence 2456899999999999888765 7899999875 4443221 111111 00011122 488999 999 77
Q ss_pred CeEEEEeCC-C-----cEEEEeCC-c------------------ceeEcC---CCCEEEEEeCC-CcEEEEeCCCC
Q 005646 500 SKVMVSCAD-S-----QVRILQGP-N------------------VIGKYK---DGKHIVSAGED-SNVYMWNCIGH 546 (686)
Q Consensus 500 ~~l~~~s~D-~-----~I~iwd~~-~------------------~~~~~~---dg~~l~sgs~D-g~V~iWd~~~~ 546 (686)
+.|+++..+ + .|++|+.. + .++++| ||++|++++.+ +.|+||+++..
T Consensus 267 ~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 267 KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 777766543 3 89999753 1 134567 79999999875 89999998764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.9e-16 Score=161.04 Aligned_cols=248 Identities=14% Similarity=0.130 Sum_probs=163.8
Q ss_pred cceeeecCCCccceeec---cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe-CCCcEEEEEee
Q 005646 205 EGERVRLNEEDAMFCSK---VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-DDGVVRLWQVV 280 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~---d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~vWd~~ 280 (686)
....++++++ +++++. ++.|.+|++...... ....+..|...+..++|+|||++|++++ .++.|++|++.
T Consensus 43 ~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~-----~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 43 TYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH-----KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp CCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE-----EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE-----EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 3467788888 665554 689999998543221 1223445778899999999999999888 67999999996
Q ss_pred cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
.......+... .... ..+. ...+...+.++
T Consensus 117 ~~g~~~~~~~~---------------------------------~~~~---------------~~p~--~~~~~~~~~~~ 146 (347)
T 3hfq_A 117 ADGALTLTDTV---------------------------------QHSG---------------HGPR--PEQDGSHIHYT 146 (347)
T ss_dssp TTSCEEEEEEE---------------------------------ECCC---------------CCSS--TTCSSCCEEEE
T ss_pred CCCCeeeccee---------------------------------ecCC---------------CCCC--ccccCCCceEE
Confidence 32211111000 0000 0000 01234568899
Q ss_pred EeeCCC-EEEEEECCCcEEEEECC-CCeeee--Eee--CCCCeEEEEEeecCCCEEEE-EEcCCcEEEEecCC--CcEEE
Q 005646 361 SWSKNN-YLLSASIDKTVRLWRVG-NDHCLR--VFP--HSNYVTCVHFNPVDDNYFIS-GSIDGKVRIWAVLS--CHVVD 431 (686)
Q Consensus 361 ~~s~~~-~L~s~s~Dg~V~iWd~~-~~~~~~--~~~--h~~~V~~v~fsp~~~~~l~s-gs~Dg~V~iwd~~~--~~~~~ 431 (686)
+|+|++ ++++...++.|++|++. +++... .+. ....+..++|+| +++++++ +..++.|++|++.. ++...
T Consensus 147 ~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 147 DLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp EECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence 999999 66677778999999998 454332 222 344788999999 8886555 55688999999874 54321
Q ss_pred ---EeccC------CcEEEEEEccCCCEEEE-EecCCcEEEEeCCCC-eeeeeeeEEeeccccCCCCCeEEEEEeCCCCC
Q 005646 432 ---WVDIR------QIVTAVCYRPDGQGGIV-GSMMGDCRFYNVSDN-HLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (686)
Q Consensus 432 ---~~~~~------~~V~~v~~spdg~~l~~-gs~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~ 500 (686)
..... ..+..++|+|||++|++ ...++.|.+|++... .+..... ...+...+.+++|+| +++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~------~~~~~~~~~~~~~sp-dg~ 298 (347)
T 3hfq_A 226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ------ISTEGDFPRDFDLDP-TEA 298 (347)
T ss_dssp EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE------EECSSSCCCEEEECT-TSS
T ss_pred eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE------EecCCCCcCeEEECC-CCC
Confidence 11222 34889999999998754 556899999999732 2222111 112334578999999 777
Q ss_pred eEEEEeC-CCcEEEEeC
Q 005646 501 KVMVSCA-DSQVRILQG 516 (686)
Q Consensus 501 ~l~~~s~-D~~I~iwd~ 516 (686)
+|+++.. ++.|.+|+.
T Consensus 299 ~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 299 FVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEEEcCCCcEEEEEE
Confidence 7777765 589999953
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-16 Score=164.98 Aligned_cols=224 Identities=8% Similarity=-0.015 Sum_probs=156.7
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEE
Q 005646 255 TMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVV 334 (686)
Q Consensus 255 ~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (686)
.+++++++.++++++.++.|++||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------------------------------------------- 39 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-------------------------------------------- 39 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--------------------------------------------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec--------------------------------------------
Confidence 456788899999999999999999988774433321
Q ss_pred eCCccccccCCCeEEeccCCCCeeEEEeeCCC-EE-EEEECCCcEEEEECCCCeeeeEeeCC-------CCeEEEEEeec
Q 005646 335 FPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHS-------NYVTCVHFNPV 405 (686)
Q Consensus 335 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L-~s~s~Dg~V~iWd~~~~~~~~~~~h~-------~~V~~v~fsp~ 405 (686)
+....+..++|+|++ ++ ++...++.|.+||+.+++.+..+... ..+.+++|+|
T Consensus 40 -----------------~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp- 101 (349)
T 1jmx_B 40 -----------------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP- 101 (349)
T ss_dssp -----------------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-
T ss_pred -----------------CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC-
Confidence 111246789999998 55 45567899999999999988777632 2378999999
Q ss_pred CCCEEEEEEcC------------CcEEEEecCCCc---EEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 406 DDNYFISGSID------------GKVRIWAVLSCH---VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 406 ~~~~l~sgs~D------------g~V~iwd~~~~~---~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
++++|++++.+ +.|.+||+.+++ .+....+...+.+++|+|||+ +++++ +.|++||+.+++.
T Consensus 102 dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~ 178 (349)
T 1jmx_B 102 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKY 178 (349)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCE
T ss_pred CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCce
Confidence 99999998865 899999998854 334445556788999999999 66654 4499999988765
Q ss_pred eeeeeEEeecccc--------------CCC----CCeEEEEEeCCCC----------CeEEEEeCCCcEEEEeC------
Q 005646 471 ELDAEICVHSKKK--------------APC----KRITGFQFLPQDS----------SKVMVSCADSQVRILQG------ 516 (686)
Q Consensus 471 ~~~~~~~~~~~~~--------------~~~----~~I~~l~fsp~~~----------~~l~~~s~D~~I~iwd~------ 516 (686)
..... ...... ... ....++.++++.. .++.....++.+++++.
T Consensus 179 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (349)
T 1jmx_B 179 TVALP--LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL 256 (349)
T ss_dssp EEEEC--STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred ecccc--ccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCc
Confidence 43211 110000 000 0234566664210 12234556677888874
Q ss_pred CcceeEcC-CCCEEEEEeCCCcEEEEeCCCCC
Q 005646 517 PNVIGKYK-DGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 517 ~~~~~~~~-dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
...++++| +|++|+++ ++.|++||+.+++
T Consensus 257 ~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~ 286 (349)
T 1jmx_B 257 YFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK 286 (349)
T ss_dssp EEEEEECSSCTTEEEEE--ESEEEEEETTTTE
T ss_pred ceeeEecCCCCCEEEEE--cCeEEEEECccCe
Confidence 24578899 99999998 8899999998754
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=184.29 Aligned_cols=261 Identities=10% Similarity=0.065 Sum_probs=176.6
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCC---ceEEEEEeeCCCEEEEEeC---------CCc
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDG---SILTMKFSPDGQYLASAGD---------DGV 273 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~Lasgs~---------Dg~ 273 (686)
...+++++.. +..+.++.|++|+....... +.+.+|.. .|.+++|||||++||+++. |+.
T Consensus 20 ~~~~s~dg~~-~~~~~d~~i~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~ 91 (719)
T 1z68_A 20 FPNWISGQEY-LHQSADNNIVLYNIETGQSY-------TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT 91 (719)
T ss_dssp CCEESSSSEE-EEECTTSCEEEEESSSCCEE-------EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccEECCCCeE-EEEcCCCCEEEEEcCCCcEE-------EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceE
Confidence 4577788854 44456999999998765431 22333333 4899999999999999876 789
Q ss_pred EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccC
Q 005646 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (686)
Q Consensus 274 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 353 (686)
|++||+.+++.+... . .
T Consensus 92 i~~~d~~~g~~~~~~---------------------------------------------------------~------l 108 (719)
T 1z68_A 92 YYIYDLSNGEFVRGN---------------------------------------------------------E------L 108 (719)
T ss_dssp EEEEETTTTEECCSS---------------------------------------------------------C------C
T ss_pred EEEEECCCCccccce---------------------------------------------------------e------c
Confidence 999999887631100 0 0
Q ss_pred CCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCe-----------------EEEEEeecCCCEEEEE
Q 005646 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYV-----------------TCVHFNPVDDNYFISG 413 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V-----------------~~v~fsp~~~~~l~sg 413 (686)
...+..++|||+| .|+.+. ++.|++||+.++++..... +...| .+++|+| |+++|+++
T Consensus 109 ~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~ 186 (719)
T 1z68_A 109 PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYA 186 (719)
T ss_dssp CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEE
T ss_pred CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEE
Confidence 1357889999999 777775 7899999999887765432 33322 4899999 99999998
Q ss_pred EcCC----------------------------------cEEEEecCCCcEE---EE------eccCCcEEEEEEccCCCE
Q 005646 414 SIDG----------------------------------KVRIWAVLSCHVV---DW------VDIRQIVTAVCYRPDGQG 450 (686)
Q Consensus 414 s~Dg----------------------------------~V~iwd~~~~~~~---~~------~~~~~~V~~v~~spdg~~ 450 (686)
+.|. .|++||+.+++.. .. ..+...+..++|+||++.
T Consensus 187 ~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~ 266 (719)
T 1z68_A 187 EFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERV 266 (719)
T ss_dssp EEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEE
T ss_pred EECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeE
Confidence 8663 7889999988742 22 246667899999999887
Q ss_pred EEEEecCC----cEEEEe----CCCCeeeeeeeEEeeccccCCCCCeE-----EEEEeCCCCCeEEE--EeCCC--cEEE
Q 005646 451 GIVGSMMG----DCRFYN----VSDNHLELDAEICVHSKKKAPCKRIT-----GFQFLPQDSSKVMV--SCADS--QVRI 513 (686)
Q Consensus 451 l~~gs~dg----~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~I~-----~l~fsp~~~~~l~~--~s~D~--~I~i 513 (686)
+++....+ .|++|| +.+++........ ...+...+. .+.|+| +++.++. ...++ .|.+
T Consensus 267 ~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~ 341 (719)
T 1z68_A 267 CLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHI----EESRTGWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHY 341 (719)
T ss_dssp EEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEE----EECSSSCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEE
T ss_pred EEEEeccccCeEEEEEEcccCCCCCCceEEEEecc----cccCCceEccccCCccEECC-CCCeEEEEEEccCCceEEEE
Confidence 77644332 488899 7666543321100 012334454 789999 5564443 33555 4666
Q ss_pred EeCCc--------------ceeEcCCCCEEEEEeCC-----CcEEEEeCCC
Q 005646 514 LQGPN--------------VIGKYKDGKHIVSAGED-----SNVYMWNCIG 545 (686)
Q Consensus 514 wd~~~--------------~~~~~~dg~~l~sgs~D-----g~V~iWd~~~ 545 (686)
|+..+ .+.++ +++.|+..+.+ +.+++|.+..
T Consensus 342 ~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 342 IKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp ESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 66432 13445 77777766654 8899998765
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.69 E-value=9.9e-15 Score=153.96 Aligned_cols=250 Identities=11% Similarity=0.122 Sum_probs=165.3
Q ss_pred cceeeecCCCccceeecc----ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe-CCCcEEEEEe
Q 005646 205 EGERVRLNEEDAMFCSKV----QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-DDGVVRLWQV 279 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d----~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~vWd~ 279 (686)
....++++++.+++++.+ +.|.+|++......+.. ...+..+......+++ ++++|++++ .++.|.+|++
T Consensus 53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~---~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~ 127 (361)
T 3scy_A 53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL---LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPI 127 (361)
T ss_dssp CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE---EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEB
T ss_pred ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE---eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEe
Confidence 346788899988888775 79999988764222221 1233345567778888 888888877 5789999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.....+..+... .... . .-......+...+.+
T Consensus 128 ~~~g~~~~~~~~--------~~~~----------------------g------------------~~~~~~~~~~~~~~~ 159 (361)
T 3scy_A 128 GQDGALLPASDV--------IEFK----------------------G------------------SGPDKERQTMPHLHC 159 (361)
T ss_dssp CTTSCBCSCSEE--------EECC----------------------C------------------CCSCTTTCSSCCEEE
T ss_pred CCCCcCccccee--------EEcc----------------------C------------------CCCCccccCCCcceE
Confidence 754422111000 0000 0 000000123445788
Q ss_pred EEeeCCC-EEEEEE-CCCcEEEEECCCCee--------------eeEeeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEE
Q 005646 360 LSWSKNN-YLLSAS-IDKTVRLWRVGNDHC--------------LRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIW 422 (686)
Q Consensus 360 l~~s~~~-~L~s~s-~Dg~V~iWd~~~~~~--------------~~~~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iw 422 (686)
++|+|++ +|+.++ .++.|++|++..... .....+...+..++|+| +++++++++ .++.|++|
T Consensus 160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~ 238 (361)
T 3scy_A 160 VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAF 238 (361)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEE
Confidence 9999999 565555 589999999875432 12223567789999999 999887777 68999999
Q ss_pred ecCCCcEEEEe------ccCCcEEEEEEccCCCEEEEEecC--CcEEEEeCC--CCeeeeeeeEEeeccccCCCCCeEEE
Q 005646 423 AVLSCHVVDWV------DIRQIVTAVCYRPDGQGGIVGSMM--GDCRFYNVS--DNHLELDAEICVHSKKKAPCKRITGF 492 (686)
Q Consensus 423 d~~~~~~~~~~------~~~~~V~~v~~spdg~~l~~gs~d--g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~I~~l 492 (686)
|+.++.+.... .+...+..++|+|||++|+++..+ +.|.+|++. ++++.....+.. ...+.++
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-------g~~~~~~ 311 (361)
T 3scy_A 239 RYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-------GIHPRNF 311 (361)
T ss_dssp EEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-------SSCCCEE
T ss_pred EecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-------CCCCceE
Confidence 99987653221 122446899999999998776654 889999996 444332222211 2457899
Q ss_pred EEeCCCCCeEEEEe-CCCcEEEEeC
Q 005646 493 QFLPQDSSKVMVSC-ADSQVRILQG 516 (686)
Q Consensus 493 ~fsp~~~~~l~~~s-~D~~I~iwd~ 516 (686)
+|+| ++++|++++ .++.|.+|..
T Consensus 312 ~~sp-dg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 312 IITP-NGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp EECT-TSCEEEEEETTTTEEEEEEE
T ss_pred EECC-CCCEEEEEECCCCCEEEEEE
Confidence 9999 777777776 6789999653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-15 Score=160.30 Aligned_cols=266 Identities=11% Similarity=0.009 Sum_probs=173.2
Q ss_pred eeeecCCCccceeec-cce--EEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 207 ERVRLNEEDAMFCSK-VQR--VKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~-d~~--v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
..|++++++++..+. ++. |.+|+..... .. +...+|...+..+.|+|||++|+.++.++.|++||+.+++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~--~~-----~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~ 113 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV--AT-----QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE 113 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCE--EE-----ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCc--eE-----EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 468999999988887 664 6666655432 21 2233455566678899999999999999999999998876
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE--E
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL--S 361 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l--~ 361 (686)
....... +...+... .
T Consensus 114 ~~~~~~~--------------------------------------------------------------~~~~~~~~~~~ 131 (388)
T 3pe7_A 114 ENVVYQV--------------------------------------------------------------PAEWVGYGTWV 131 (388)
T ss_dssp EEEEEEC--------------------------------------------------------------CTTEEEEEEEE
T ss_pred ceeeeec--------------------------------------------------------------hhhccccccee
Confidence 4332221 22222222 2
Q ss_pred eeCCC-EEEE----------------------EECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC--
Q 005646 362 WSKNN-YLLS----------------------ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID-- 416 (686)
Q Consensus 362 ~s~~~-~L~s----------------------~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D-- 416 (686)
+++++ +|+. ...+..|.+||+.+++......+...+..++|+|.+++.|+..+.+
T Consensus 132 ~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~ 211 (388)
T 3pe7_A 132 ANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPH 211 (388)
T ss_dssp ECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCT
T ss_pred ECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCC
Confidence 25555 3332 2245789999999998777777888899999999556777766653
Q ss_pred ----CcEEEEecCCCcEEEEeccC--CcEEEEEEccCCCEEEEEec-CC----cEEEEeCCCCeeeeeeeEEeeccccCC
Q 005646 417 ----GKVRIWAVLSCHVVDWVDIR--QIVTAVCYRPDGQGGIVGSM-MG----DCRFYNVSDNHLELDAEICVHSKKKAP 485 (686)
Q Consensus 417 ----g~V~iwd~~~~~~~~~~~~~--~~V~~v~~spdg~~l~~gs~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~ 485 (686)
..|.++|+.++....+..+. ..+..++|+|||+.|+..+. ++ .|++||+.+++..............
T Consensus 212 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~-- 289 (388)
T 3pe7_A 212 DLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLM-- 289 (388)
T ss_dssp TTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEE--
T ss_pred CCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeee--
Confidence 37888888777665555544 35788999999998866443 22 3999999988754322211100000
Q ss_pred CCCeEEEEEeCCCCCeEEEE---------eCCCcEEEEeCCc-------------------------ceeEcCCCCEEEE
Q 005646 486 CKRITGFQFLPQDSSKVMVS---------CADSQVRILQGPN-------------------------VIGKYKDGKHIVS 531 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~---------s~D~~I~iwd~~~-------------------------~~~~~~dg~~l~s 531 (686)
.....+.|+| +++.|+.. ..+..|++||..+ ..+|+|||++|+.
T Consensus 290 -~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~ 367 (388)
T 3pe7_A 290 -SNYDGSLMVG-DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF 367 (388)
T ss_dssp -ECTTSSEEEE-EECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred -ecCCCCeEcc-CCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence 0012236899 55555543 4567899998542 2378899998887
Q ss_pred Ee-CCCcEEEEeCCC
Q 005646 532 AG-EDSNVYMWNCIG 545 (686)
Q Consensus 532 gs-~Dg~V~iWd~~~ 545 (686)
++ .+|...||.++-
T Consensus 368 ~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 368 TSDVHGKPALYLATL 382 (388)
T ss_dssp EECTTSSCEEEEEEC
T ss_pred EecCCCceeEEEEEC
Confidence 66 467777776543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=182.71 Aligned_cols=227 Identities=9% Similarity=0.050 Sum_probs=158.1
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEE
Q 005646 255 TMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVV 334 (686)
Q Consensus 255 ~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (686)
+++|+|||++++++ .|+.|++||+.+++...
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~------------------------------------------------ 50 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYT------------------------------------------------ 50 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEE------------------------------------------------
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEE------------------------------------------------
Confidence 78999999766654 69999999998876322
Q ss_pred eCCccccccCCCeEEeccCCC---CeeEEEeeCCC-EEEEEEC---------CCcEEEEECCCCeeeeEeeCCCCeEEEE
Q 005646 335 FPPKVFRILEKPLHEFHGHSG---EILDLSWSKNN-YLLSASI---------DKTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (686)
Q Consensus 335 ~~~~~~~~~~~~~~~l~~h~~---~V~~l~~s~~~-~L~s~s~---------Dg~V~iWd~~~~~~~~~~~h~~~V~~v~ 401 (686)
.+.+|.. .|.+++||||| +|++++. +++|++||+.+++.+........+..++
T Consensus 51 --------------~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~ 116 (719)
T 1z68_A 51 --------------ILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLC 116 (719)
T ss_dssp --------------EECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEE
T ss_pred --------------EEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccce
Confidence 1222322 48899999999 8888776 7899999999998742222246789999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCcEEEEe--ccCCcE-----------------EEEEEccCCCEEEEEecCC----
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIV-----------------TAVCYRPDGQGGIVGSMMG---- 458 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~V-----------------~~v~~spdg~~l~~gs~dg---- 458 (686)
|+| |++.|+.+. ++.|++||+.+++...+. ++...| .+++|+|||++|++++.|.
T Consensus 117 ~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~ 194 (719)
T 1z68_A 117 WSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIP 194 (719)
T ss_dssp ECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSC
T ss_pred ECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCc
Confidence 999 999999886 789999999988765433 222222 4899999999999987652
Q ss_pred ------------------------------cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 459 ------------------------------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 459 ------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
.|++||+.+++......+........+...+..++|+| ++.++++....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~ 273 (719)
T 1z68_A 195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKR 273 (719)
T ss_dssp EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEES
T ss_pred eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEecc
Confidence 78899998765320001111011224566789999999 56666664332
Q ss_pred ----CcEEEEe----CCc------------------------ceeEcCCCCEEEE--EeCCC--cEEEEeCCCCC
Q 005646 509 ----SQVRILQ----GPN------------------------VIGKYKDGKHIVS--AGEDS--NVYMWNCIGHE 547 (686)
Q Consensus 509 ----~~I~iwd----~~~------------------------~~~~~~dg~~l~s--gs~Dg--~V~iWd~~~~~ 547 (686)
..|.+|| ..+ ...|+|||+.|+. ...+| .|++|++.+++
T Consensus 274 ~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 274 VQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp STTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred ccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 3488899 321 3458889996554 44555 57777776654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.2e-15 Score=156.87 Aligned_cols=230 Identities=14% Similarity=0.083 Sum_probs=162.2
Q ss_pred ecccCCceEE-----EEEeeCCCEEEEEeC-CCc--EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeecccc
Q 005646 246 IQAHDGSILT-----MKFSPDGQYLASAGD-DGV--VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEK 317 (686)
Q Consensus 246 l~~H~~~I~~-----l~fspdg~~Lasgs~-Dg~--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (686)
+..|...... .+|+|||++|+.++. ++. |.+||+.+++...
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~------------------------------- 74 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ------------------------------- 74 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------------------
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------------------
Confidence 4455555555 789999999999987 674 7777877765221
Q ss_pred ceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCC
Q 005646 318 ISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSN 395 (686)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~ 395 (686)
...+|...+..+.|+|++ .|+.++.++.|++||+.+++....+. +..
T Consensus 75 -------------------------------lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~ 123 (388)
T 3pe7_A 75 -------------------------------LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE 123 (388)
T ss_dssp -------------------------------CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT
T ss_pred -------------------------------eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhh
Confidence 112344455567899999 99999999999999999998877766 445
Q ss_pred CeEEEE--EeecCCCEEEEEE----------------------cCCcEEEEecCCCcEEEEeccCCcEEEEEEcc-CCCE
Q 005646 396 YVTCVH--FNPVDDNYFISGS----------------------IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQG 450 (686)
Q Consensus 396 ~V~~v~--fsp~~~~~l~sgs----------------------~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp-dg~~ 450 (686)
.+.... ++| ++.+++... .+..|++||+.+++...+..+...+..++|+| ||+.
T Consensus 124 ~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~ 202 (388)
T 3pe7_A 124 WVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDST 202 (388)
T ss_dssp EEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEE
T ss_pred cccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCE
Confidence 454444 377 888877432 34679999999998888777888899999999 9999
Q ss_pred EEEEecC------CcEEEEeCCCCeeeeeeeEEeeccccCCC-CCeEEEEEeCCCCCeEEEEeC-CC----cEEEEeCCc
Q 005646 451 GIVGSMM------GDCRFYNVSDNHLELDAEICVHSKKKAPC-KRITGFQFLPQDSSKVMVSCA-DS----QVRILQGPN 518 (686)
Q Consensus 451 l~~gs~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~I~~l~fsp~~~~~l~~~s~-D~----~I~iwd~~~ 518 (686)
|+....+ ..|.++|+.+...... ..... ..+..+.|+| +++.|+..+. ++ .|++||..+
T Consensus 203 l~~~~~~~~~~~~~~l~~~d~~~~~~~~l--------~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (388)
T 3pe7_A 203 VAFCHEGPHDLVDARMWLINEDGTNMRKV--------KTHAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPET 273 (388)
T ss_dssp EEEEECSCTTTSSCSEEEEETTSCCCEES--------CCCCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEEEECTTT
T ss_pred EEEEEecCCCCCcceEEEEeCCCCceEEe--------eeCCCCcccccceECC-CCCEEEEEecCCCCCcceEEEEecCC
Confidence 8887653 3788888876543221 11111 2477889999 6666654432 22 399998653
Q ss_pred c--------------------eeEcCCCCEEEEE---------eCCCcEEEEeCCCCC
Q 005646 519 V--------------------IGKYKDGKHIVSA---------GEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 ~--------------------~~~~~dg~~l~sg---------s~Dg~V~iWd~~~~~ 547 (686)
. ..|+|||++|+.. ..+..|++||+.+++
T Consensus 274 g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 274 LENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp CCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred CceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 1 2578899888854 456789999998764
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-15 Score=174.13 Aligned_cols=234 Identities=9% Similarity=0.068 Sum_probs=161.5
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCce
Q 005646 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (686)
...++.|+|||++|+++ |+.|++||+.+++....+..+..
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~-------------------------------------- 57 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTF-------------------------------------- 57 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTT--------------------------------------
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhh--------------------------------------
Confidence 45689999999999996 89999999998874333221110
Q ss_pred EEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECC---------CcEEEEECCCCeeeeEeeCCCCeEEEE
Q 005646 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASID---------KTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (686)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~D---------g~V~iWd~~~~~~~~~~~h~~~V~~v~ 401 (686)
..+.....+++||||| +|+.++.+ +.+.+||+.++++.....|...+..++
T Consensus 58 -------------------~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~ 118 (740)
T 4a5s_A 58 -------------------DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVT 118 (740)
T ss_dssp -------------------TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEE
T ss_pred -------------------hhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeE
Confidence 0122233568999999 88888876 556799999999876556888999999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCcEEEEec--cCCcE-----------------EEEEEccCCCEEEEEecCC----
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD--IRQIV-----------------TAVCYRPDGQGGIVGSMMG---- 458 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~--~~~~V-----------------~~v~~spdg~~l~~gs~dg---- 458 (686)
|+| |++.|+.+. |+.|++||+.++....+.. ....+ .++.|+|||+.||.++.|.
T Consensus 119 ~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~ 196 (740)
T 4a5s_A 119 WSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVP 196 (740)
T ss_dssp ECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCC
T ss_pred ECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCc
Confidence 999 999998885 7899999999887654332 22222 3589999999999876432
Q ss_pred --------------------------------cEEEEeCCC---CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 459 --------------------------------DCRFYNVSD---NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 459 --------------------------------~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
+|++||+.+ +.......+........+...+..++|+| +++.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~ 275 (740)
T 4a5s_A 197 LIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISL 275 (740)
T ss_dssp EEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEE
T ss_pred eEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEE
Confidence 367777776 52111111111000112556689999999 667655
Q ss_pred EEeC----CCcEEEEeCCc----------------------------ceeEcCCCCEEE-EEeCC---CcEEEEeCCCCC
Q 005646 504 VSCA----DSQVRILQGPN----------------------------VIGKYKDGKHIV-SAGED---SNVYMWNCIGHE 547 (686)
Q Consensus 504 ~~s~----D~~I~iwd~~~----------------------------~~~~~~dg~~l~-sgs~D---g~V~iWd~~~~~ 547 (686)
.... +..|++||..+ ...|+|||+.|+ ..+++ ..|++|++.++.
T Consensus 276 ~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 276 QWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp EEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred EEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 5432 34688998321 246789999887 77643 468889988765
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-13 Score=138.52 Aligned_cols=230 Identities=7% Similarity=0.070 Sum_probs=167.9
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeecc
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (686)
+|-..+.+++++++|+++++...++.|++||.. ++.+..+....
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~----------------------------------- 70 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG----------------------------------- 70 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS-----------------------------------
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC-----------------------------------
Confidence 466789999999999988888889999999975 44322221000
Q ss_pred CCceEEEeCCccccccCCCeEEeccCCCCeeEEEee-CCCEEEEEEC--CCcEEEEECCCCeeeeEee--CCCCeEEEEE
Q 005646 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-KNNYLLSASI--DKTVRLWRVGNDHCLRVFP--HSNYVTCVHF 402 (686)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s-~~~~L~s~s~--Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~f 402 (686)
.-.+|...+..+++. +++.|+.+.. ++.|++|| .+++.+..+. +...+.++++
T Consensus 71 ---------------------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~ 128 (286)
T 1q7f_A 71 ---------------------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTV 128 (286)
T ss_dssp ---------------------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEE
T ss_pred ---------------------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEE
Confidence 001345678899994 6775555553 89999999 5677777765 4567899999
Q ss_pred eecCCCEEEEEEcCCcEEEEecCCCcEEEEe---ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEee
Q 005646 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (686)
Q Consensus 403 sp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~---~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~ 479 (686)
+| +++++++...++.|++||.. ++.+... .....+..++++|+|+++++...++.|++||.....+.. +.
T Consensus 129 ~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~-----~~ 201 (286)
T 1q7f_A 129 DN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQ-----IG 201 (286)
T ss_dssp CT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEE-----ES
T ss_pred eC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEE-----Ec
Confidence 99 88888888888999999965 4444333 233568999999999988887889999999986432211 11
Q ss_pred ccccCCCCCeEEEEEeCCCCCeEEEEeCCC-cEEEEeCCc----------------ceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADS-QVRILQGPN----------------VIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 480 ~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~-~I~iwd~~~----------------~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
...+...+.++++++ ++.++++...++ .|++|+... .+++.++|+++++ +.|+.|++|+
T Consensus 202 --~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 202 --GEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp --CTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred --cCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEE
Confidence 112235689999999 677777777776 999998431 3677889987777 6799999999
Q ss_pred CCCC
Q 005646 543 CIGH 546 (686)
Q Consensus 543 ~~~~ 546 (686)
+...
T Consensus 278 ~~~~ 281 (286)
T 1q7f_A 278 YVQL 281 (286)
T ss_dssp CSCC
T ss_pred cccc
Confidence 8654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-14 Score=151.12 Aligned_cols=258 Identities=11% Similarity=0.101 Sum_probs=173.8
Q ss_pred ccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC----------CCcEEEEEeecCeeeeeecc
Q 005646 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD----------DGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~----------Dg~I~vWd~~~~~~~~~~~~ 290 (686)
.++.|.+||...... ...+..+..+ .++|+|||++|+++.. +++|.+||+.+.+.+..+..
T Consensus 29 ~d~~v~v~D~~t~~~-------~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~ 99 (361)
T 2oiz_A 29 TESRVHVYDYTNGKF-------LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISL 99 (361)
T ss_dssp GGCEEEEEETTTCCE-------EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEE
T ss_pred ccCeEEEEECCCCeE-------EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEc
Confidence 478999998755432 1234555555 8999999999999863 67899999988776554432
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL 369 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~ 369 (686)
.... ..+......++++|+| +|+
T Consensus 100 ~~~~--------------------------------------------------------~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 100 PPKR--------------------------------------------------------VQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp CTTB--------------------------------------------------------CCBCCCGGGEEECTTSSEEE
T ss_pred Cccc--------------------------------------------------------cccCCCcceEEECCCCCEEE
Confidence 1100 0123456789999999 777
Q ss_pred EEEC--CCcEEEEECCCCeeeeE-eeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC-CcEEEEe------ccCCcE
Q 005646 370 SASI--DKTVRLWRVGNDHCLRV-FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHVVDWV------DIRQIV 439 (686)
Q Consensus 370 s~s~--Dg~V~iWd~~~~~~~~~-~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-~~~~~~~------~~~~~V 439 (686)
++.. +++|.+||+.+++.+.. +..... ..+.+.|.....+++.+.||++.+|++.. +++.... ......
T Consensus 124 v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~ 202 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP 202 (361)
T ss_dssp EEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC
T ss_pred EECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc
Confidence 7763 68999999999999888 765433 33667784457889999999999999865 5554211 111112
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCC----CCCeEEEEEeCCCCCeEEEEeC--------
Q 005646 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP----CKRITGFQFLPQDSSKVMVSCA-------- 507 (686)
Q Consensus 440 ~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~I~~l~fsp~~~~~l~~~s~-------- 507 (686)
..+.++|++..++..+.++.+.++|+..........+........+ ......++|+| ++..++++..
T Consensus 203 ~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~ 281 (361)
T 2oiz_A 203 IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTH 281 (361)
T ss_dssp BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCT
T ss_pred eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccc
Confidence 2344578888888888999999999976543322221111100000 01122378999 5565555432
Q ss_pred ---CCcEEEEeCCc-------------ceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 508 ---DSQVRILQGPN-------------VIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 508 ---D~~I~iwd~~~-------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.+.|.+||..+ .++++|||++|++++. +.|.|||..++
T Consensus 282 ~~~~~~v~viD~~t~~~v~~i~~~~p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 282 KFPAAEIWVMDTKTKQRVARIPGRDALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TCCCSEEEEEETTTTEEEEEEECTTCCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred cCCCceEEEEECCCCcEEEEEecCCeeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 35799999643 4678999999999887 99999999887
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-14 Score=167.12 Aligned_cols=238 Identities=10% Similarity=0.103 Sum_probs=159.6
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC---------CcEEE
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---------GVVRL 276 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---------g~I~v 276 (686)
-..+++++.+++++ ++.|++|+...... ..+.....+..+......+.|||||++|+.++.+ +.+.+
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNS--SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCE--EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCce--EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 45677888777775 89999999876543 1222222222233334568999999999999876 55669
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.+++.. .+..|...
T Consensus 97 ~d~~~~~~~---------------------------------------------------------------~l~~~~~~ 113 (740)
T 4a5s_A 97 YDLNKRQLI---------------------------------------------------------------TEERIPNN 113 (740)
T ss_dssp EETTTTEEC---------------------------------------------------------------CSSCCCTT
T ss_pred EECCCCcEE---------------------------------------------------------------EcccCCCc
Confidence 999887621 13346678
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCe-----------------EEEEEeecCCCEEEEEEcC
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYV-----------------TCVHFNPVDDNYFISGSID 416 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V-----------------~~v~fsp~~~~~l~sgs~D 416 (686)
+...+||||| .||.++ |+.|++|++.+++..+... +...+ ..+.|+| |+++|+.++.|
T Consensus 114 ~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d 191 (740)
T 4a5s_A 114 TQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFN 191 (740)
T ss_dssp EEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEE
T ss_pred ceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEc
Confidence 9999999999 777774 7899999998887554322 22223 3589999 99999988643
Q ss_pred C------------------------------------cEEEEecCC---C---cEEEEec------cCCcEEEEEEccCC
Q 005646 417 G------------------------------------KVRIWAVLS---C---HVVDWVD------IRQIVTAVCYRPDG 448 (686)
Q Consensus 417 g------------------------------------~V~iwd~~~---~---~~~~~~~------~~~~V~~v~~spdg 448 (686)
. +|++||+.+ + +...+.. +...+..++|+|||
T Consensus 192 ~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg 271 (740)
T 4a5s_A 192 DTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE 271 (740)
T ss_dssp CTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT
T ss_pred ccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC
Confidence 2 488899988 7 4444432 66679999999999
Q ss_pred CEEEEEec----CCcEEEEeCCCCe----eeeeeeEEeeccccCCCCCe-----EEEEEeCCCCCeEE-EEeC-C--CcE
Q 005646 449 QGGIVGSM----MGDCRFYNVSDNH----LELDAEICVHSKKKAPCKRI-----TGFQFLPQDSSKVM-VSCA-D--SQV 511 (686)
Q Consensus 449 ~~l~~gs~----dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~I-----~~l~fsp~~~~~l~-~~s~-D--~~I 511 (686)
+.++.... +..|++||+.+++ +.....+.. ..+...| ....|+| +++.++ ..+. + ..|
T Consensus 272 ~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~----~~~~~~v~~~~~~~p~fsp-DG~~l~~~~s~~~G~~~l 346 (740)
T 4a5s_A 272 RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE----MSTTGWVGRFRPSEPHFTL-DGNSFYKIISNEEGYRHI 346 (740)
T ss_dssp EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE----ECSSSCSSSSSCCCCEECT-TSSEEEEEEECTTSCEEE
T ss_pred eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee----ccCCceEccCcCCCceEcC-CCCEEEEEEEcCCCceEE
Confidence 97766543 3369999998876 222111110 1122333 3678999 666655 5553 3 457
Q ss_pred EEEeCC
Q 005646 512 RILQGP 517 (686)
Q Consensus 512 ~iwd~~ 517 (686)
.+|+..
T Consensus 347 ~~~~~~ 352 (740)
T 4a5s_A 347 CYFQID 352 (740)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 777754
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-14 Score=150.50 Aligned_cols=240 Identities=12% Similarity=0.082 Sum_probs=159.6
Q ss_pred ceeeecCCCccceeeccceEEEEEcC-CccccccccccCceecccCCceEEEEEeeCCCE--EEEEe-------------
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCK-KRSKELSALYKGQEIQAHDGSILTMKFSPDGQY--LASAG------------- 269 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~-~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~--Lasgs------------- 269 (686)
...++++++.+++++.+ .|.+|++. ... +.... ....+ +.+.+++|+|||++ ++++.
T Consensus 44 ~~a~spdg~~l~~~~~~-~v~~~~~~~~g~--~~~~~---~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 44 WMTFDHERKNIYGAAMK-KWSSFAVKSPTE--IVHEA---SHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp EEEECTTSSEEEEEEBT-EEEEEEEEETTE--EEEEE---EEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred EEEECCCCCEEEEEccc-eEEEEEECCCCC--EEEee---EeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 35678888888888877 99999985 321 11110 11111 23556899999994 55653
Q ss_pred CCCcEEEEEeec-CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeE
Q 005646 270 DDGVVRLWQVVE-DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLH 348 (686)
Q Consensus 270 ~Dg~I~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (686)
.++.+.+|++.. ++....+ .
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~-----------------------------------------------------------~ 137 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNV-----------------------------------------------------------Q 137 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEE-----------------------------------------------------------E
T ss_pred CCceEEEEccCCCCcCcceE-----------------------------------------------------------e
Confidence 689999999863 4321111 0
Q ss_pred Ee-ccCCCCeeEEEeeCCC-EEEEEEC-CCcEEEEECC-CCeee--eEee---CCCCeEEEEEeecCCCEEEEEEc-CCc
Q 005646 349 EF-HGHSGEILDLSWSKNN-YLLSASI-DKTVRLWRVG-NDHCL--RVFP---HSNYVTCVHFNPVDDNYFISGSI-DGK 418 (686)
Q Consensus 349 ~l-~~h~~~V~~l~~s~~~-~L~s~s~-Dg~V~iWd~~-~~~~~--~~~~---h~~~V~~v~fsp~~~~~l~sgs~-Dg~ 418 (686)
.+ ..+...+.+++|+|+| +|+++.. ++.|++||+. +++.. ..+. |...+..++|+| +++++++++. ++.
T Consensus 138 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~ 216 (365)
T 1jof_A 138 NYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNR 216 (365)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTE
T ss_pred eEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCe
Confidence 00 1245678899999999 7776654 6899999998 67643 2333 367799999999 9998888775 689
Q ss_pred EEEEecC--CCcEEE----Eecc-------CC------cEEEEE-EccCCCEEEEEecCC------cEEEEeCC-CCeee
Q 005646 419 VRIWAVL--SCHVVD----WVDI-------RQ------IVTAVC-YRPDGQGGIVGSMMG------DCRFYNVS-DNHLE 471 (686)
Q Consensus 419 V~iwd~~--~~~~~~----~~~~-------~~------~V~~v~-~spdg~~l~~gs~dg------~i~iwd~~-~~~~~ 471 (686)
|.+|++. +++... .... .. .+..++ |+|||++|++++.+. .|.+|++. ++++.
T Consensus 217 v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~ 296 (365)
T 1jof_A 217 ICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred EEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence 9999875 555421 1111 11 488999 999999988776533 89999996 45433
Q ss_pred eeeeEEeeccccCCCCCeEEEEEeCC--CCCeEEEEeC-CCcEEEEeCC
Q 005646 472 LDAEICVHSKKKAPCKRITGFQFLPQ--DSSKVMVSCA-DSQVRILQGP 517 (686)
Q Consensus 472 ~~~~~~~~~~~~~~~~~I~~l~fsp~--~~~~l~~~s~-D~~I~iwd~~ 517 (686)
..... . ..+...+..++|+|. ++++|+++.. ++.|++|+..
T Consensus 297 ~~~~~-~----~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 297 KQLFL-S----PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEEEE-E----ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred Eeeee-e----ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 21110 1 112234667899995 5788888876 4899999864
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.3e-14 Score=149.17 Aligned_cols=279 Identities=10% Similarity=0.028 Sum_probs=172.5
Q ss_pred eeeecCCCccceeecc---ceEEEEEcCCccccccccccCceecccCCc-eEEEEEeeCCCEEEEEeCCCcEEEEEeecC
Q 005646 207 ERVRLNEEDAMFCSKV---QRVKVYHCKKRSKELSALYKGQEIQAHDGS-ILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d---~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~ 282 (686)
..++++|++++..... ..|.+|+...... . .+..+... ...+.|+|||++|+.++.++.|++||+.++
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~--~------~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~ 112 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA--V------QLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL 112 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTTEE--E------ECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCCCcE--E------EeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence 4688899988776543 3677777654321 1 12223333 334789999999999999999999999887
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
+.......+.. +. +.+ ..+++.... ....+ ....+.|
T Consensus 113 ~~~~~~~~~~~------~~-------------~~g-------------~~l~~~~~~------~~~~~-----~~~~~~~ 149 (396)
T 3c5m_A 113 EEQVIYTVDEE------WK-------------GYG-------------TWVANSDCT------KLVGI-----EILKRDW 149 (396)
T ss_dssp CEEEEEECCTT------EE-------------EEE-------------EEEECTTSS------EEEEE-----EEEGGGC
T ss_pred CcEEEEecccc------cC-------------CCC-------------CEEEeccCC------ccccc-----ccccccc
Confidence 64433322111 00 000 000000000 00000 0012457
Q ss_pred eCCC-EEEEE-----ECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC------CcEEEEecCCCcEE
Q 005646 363 SKNN-YLLSA-----SIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID------GKVRIWAVLSCHVV 430 (686)
Q Consensus 363 s~~~-~L~s~-----s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D------g~V~iwd~~~~~~~ 430 (686)
+|++ .++.+ ..+..|.+||+.+++......+...+..+.|+|.++..|+..+.+ ..|.+||+.+++..
T Consensus 150 spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~ 229 (396)
T 3c5m_A 150 QPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR 229 (396)
T ss_dssp CCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE
T ss_pred CCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee
Confidence 7887 44433 467789999999988777777888899999999446666665543 36889998777655
Q ss_pred EEecc--CCcEEEEEEccCCCEEEEEecC-----CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 431 DWVDI--RQIVTAVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 431 ~~~~~--~~~V~~v~~spdg~~l~~gs~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
.+..+ ...+..++|+|||+.|+.++.+ +.|++||+.+++...... . .... +.|+|.++..++
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~------~----~~~~-~~~s~~dg~~l~ 298 (396)
T 3c5m_A 230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV------M----PPCS-HLMSNFDGSLMV 298 (396)
T ss_dssp ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE------C----CSEE-EEEECSSSSEEE
T ss_pred EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee------C----CCCC-CCccCCCCceEE
Confidence 44443 2357889999999988777554 449999998776432111 0 1133 889983455666
Q ss_pred EEe----------------CCCcEEEEeCCc-------------------------ceeEcCCCCEEEEEeC-CCcEEEE
Q 005646 504 VSC----------------ADSQVRILQGPN-------------------------VIGKYKDGKHIVSAGE-DSNVYMW 541 (686)
Q Consensus 504 ~~s----------------~D~~I~iwd~~~-------------------------~~~~~~dg~~l~sgs~-Dg~V~iW 541 (686)
+++ .+..|++||..+ ...++|||++|+.++. ++...||
T Consensus 299 ~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 299 GDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp EEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred EecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEE
Confidence 644 347899998531 1467889999888775 4555555
Q ss_pred --eCCCCC
Q 005646 542 --NCIGHE 547 (686)
Q Consensus 542 --d~~~~~ 547 (686)
++.++.
T Consensus 379 ~~~~~~~~ 386 (396)
T 3c5m_A 379 IADVPESY 386 (396)
T ss_dssp EEECCTTC
T ss_pred EEEEcccc
Confidence 444443
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-13 Score=156.79 Aligned_cols=190 Identities=10% Similarity=0.047 Sum_probs=129.6
Q ss_pred CCCCeeEEEeeCCC-EEEEEECC----------CcEEEEECCC------CeeeeEe-eCCCCeEEEEEeecCCCEEEEEE
Q 005646 353 HSGEILDLSWSKNN-YLLSASID----------KTVRLWRVGN------DHCLRVF-PHSNYVTCVHFNPVDDNYFISGS 414 (686)
Q Consensus 353 h~~~V~~l~~s~~~-~L~s~s~D----------g~V~iWd~~~------~~~~~~~-~h~~~V~~v~fsp~~~~~l~sgs 414 (686)
|...+..++|+|+| .|++++.| ..|++||+.+ ++..... .+...+..++|+| |+++|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP-DGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT-TSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC-CCCEEEEEE
Confidence 56678899999999 88888876 5899999988 6665555 5667888999999 999999888
Q ss_pred cCC--------cEEEEecC-CC---cEEEEec-cCCcEEEEEEccCCCEEEEEecCC--cEEEEeCCCCeeeeeeeEEee
Q 005646 415 IDG--------KVRIWAVL-SC---HVVDWVD-IRQIVTAVCYRPDGQGGIVGSMMG--DCRFYNVSDNHLELDAEICVH 479 (686)
Q Consensus 415 ~Dg--------~V~iwd~~-~~---~~~~~~~-~~~~V~~v~~spdg~~l~~gs~dg--~i~iwd~~~~~~~~~~~~~~~ 479 (686)
.++ .|++||+. ++ +...+.. +...+..++|+|||++++++..++ .|++||+.+++...... ..
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~--~~ 284 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR--RE 284 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC--CS
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc--cc
Confidence 653 79999999 56 4444444 467899999999999888888888 56677765655432111 00
Q ss_pred ccccCC--CCCeEEEEEeCCCCCeEEEEeCCCcEEEE--eCCcc------------eeE-cCCCC--EEEEEeCCC--cE
Q 005646 480 SKKKAP--CKRITGFQFLPQDSSKVMVSCADSQVRIL--QGPNV------------IGK-YKDGK--HIVSAGEDS--NV 538 (686)
Q Consensus 480 ~~~~~~--~~~I~~l~fsp~~~~~l~~~s~D~~I~iw--d~~~~------------~~~-~~dg~--~l~sgs~Dg--~V 538 (686)
...... .-.+..++|+| ++.+++++.. +.++|| |..+. ..+ .++++ ++++++.+. .|
T Consensus 285 ~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i 362 (662)
T 3azo_A 285 EEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEV 362 (662)
T ss_dssp SBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred ccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEE
Confidence 000000 00145788988 6788888888 999998 53311 122 44444 334455554 45
Q ss_pred EEEeCCCCC
Q 005646 539 YMWNCIGHE 547 (686)
Q Consensus 539 ~iWd~~~~~ 547 (686)
++||+.+++
T Consensus 363 ~~~d~~~g~ 371 (662)
T 3azo_A 363 VELDTVTGR 371 (662)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCc
Confidence 556666654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-12 Score=134.24 Aligned_cols=253 Identities=9% Similarity=0.022 Sum_probs=169.8
Q ss_pred eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeee
Q 005646 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTE 287 (686)
Q Consensus 208 ~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~ 287 (686)
.++++...++..+.++.+++|.-. . ...+..|...+.+++|+++|++++++..++.|.+||..+++...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~- 80 (333)
T 2dg1_A 12 FYSGKSNSAVPIISESELQTITAE----P------WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR- 80 (333)
T ss_dssp CSCGGGGCSSCCCCGGGSCEEECE----E------EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-
T ss_pred eecCCccceeEEeecccCcccccc----e------eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE-
Confidence 444555566666778888888211 1 12345566778999999999988888889999999987664211
Q ss_pred eccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-
Q 005646 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN- 366 (686)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~- 366 (686)
....+...+.++++++++
T Consensus 81 -------------------------------------------------------------~~~~~~~~~~~i~~~~dg~ 99 (333)
T 2dg1_A 81 -------------------------------------------------------------PFVSHKANPAAIKIHKDGR 99 (333)
T ss_dssp -------------------------------------------------------------EEECSSSSEEEEEECTTSC
T ss_pred -------------------------------------------------------------EeeCCCCCcceEEECCCCc
Confidence 111245678999999999
Q ss_pred EEEEEECC----CcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEc------CCcEEEEecCCCcEEEEe
Q 005646 367 YLLSASID----KTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSI------DGKVRIWAVLSCHVVDWV 433 (686)
Q Consensus 367 ~L~s~s~D----g~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~------Dg~V~iwd~~~~~~~~~~ 433 (686)
++++...+ +.|.+||..++.....+. +...+.+++++| +++++++... .+.|..||..+++.....
T Consensus 100 l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 178 (333)
T 2dg1_A 100 LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII 178 (333)
T ss_dssp EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE
T ss_pred EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEee
Confidence 55555555 689999998876653332 456799999999 8888877654 356777777666665544
Q ss_pred ccCCcEEEEEEccCCCEEEE-EecCCcEEEEeCCC-CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 434 DIRQIVTAVCYRPDGQGGIV-GSMMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~-gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
.....+..++|+|+|+.+++ .+.++.|++||+.+ +................+ ..+.++++.+ ++.++++...++.|
T Consensus 179 ~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~-~G~l~v~~~~~~~v 256 (333)
T 2dg1_A 179 QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDS-DDNLYVAMYGQGRV 256 (333)
T ss_dssp EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBT-TCCEEEEEETTTEE
T ss_pred cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECC-CCCEEEEEcCCCEE
Confidence 44456789999999986654 45678999999964 221111000000001111 3578899999 67777777778899
Q ss_pred EEEeCC--------------------cceeEcCCCCEEEEEeCC
Q 005646 512 RILQGP--------------------NVIGKYKDGKHIVSAGED 535 (686)
Q Consensus 512 ~iwd~~--------------------~~~~~~~dg~~l~sgs~D 535 (686)
.+||.. ..+++.+|++.|+.++.+
T Consensus 257 ~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 257 LVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999742 235566787666655544
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=157.06 Aligned_cols=231 Identities=11% Similarity=0.075 Sum_probs=161.4
Q ss_pred ceecccCCceEEEEEeeCCCEEEEE--eCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASA--GDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasg--s~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
+.+.+|...|..++|++++-++++. +.++...||....+.....+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l--------------------------------- 63 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA--------------------------------- 63 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES---------------------------------
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee---------------------------------
Confidence 3467799999999999887777777 66889999997443322222
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCee---------EEEee--CCC-E-EEEEEC-CCcEEEEECC--C-
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL---------DLSWS--KNN-Y-LLSASI-DKTVRLWRVG--N- 384 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~---------~l~~s--~~~-~-L~s~s~-Dg~V~iWd~~--~- 384 (686)
..|...+. ...|+ ||| . |+.++. +..|.+|++. .
T Consensus 64 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~ 114 (662)
T 3azo_A 64 -----------------------------LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGG 114 (662)
T ss_dssp -----------------------------SCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTC
T ss_pred -----------------------------CCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCC
Confidence 12222222 44555 888 6 666554 5567777765 3
Q ss_pred CeeeeEee-----CCCCeEEEEEeecCCCEEEEEEcC----------CcEEEEecCC------CcEEEEe-ccCCcEEEE
Q 005646 385 DHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSID----------GKVRIWAVLS------CHVVDWV-DIRQIVTAV 442 (686)
Q Consensus 385 ~~~~~~~~-----h~~~V~~v~fsp~~~~~l~sgs~D----------g~V~iwd~~~------~~~~~~~-~~~~~V~~v 442 (686)
+....... |...+..++|+| +++.|++++.+ ..|++||+.+ ++...+. .+...+..+
T Consensus 115 ~~~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (662)
T 3azo_A 115 AVPRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGP 193 (662)
T ss_dssp CCCEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCC
T ss_pred CCCEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCc
Confidence 44333333 466789999999 99999998877 5899999998 7766666 666778889
Q ss_pred EEccCCCEEEEEecCC--------cEEEEeCC-CCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCC--cE
Q 005646 443 CYRPDGQGGIVGSMMG--------DCRFYNVS-DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS--QV 511 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg--------~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~--~I 511 (686)
+|+|||++|+.++.++ .|++||+. ++.......+. ..+...+..+.|+| ++++++++..++ .|
T Consensus 194 ~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-----~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l 267 (662)
T 3azo_A 194 RLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-----GGPEEAIAQAEWAP-DGSLIVATDRTGWWNL 267 (662)
T ss_dssp EECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-----EETTBCEEEEEECT-TSCEEEEECTTSSCEE
T ss_pred eECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC-----CCCCceEcceEECC-CCeEEEEECCCCCeEE
Confidence 9999999999887553 79999998 45221111111 12235689999999 566888888888 56
Q ss_pred EEEeCCc-----------------------ceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 512 RILQGPN-----------------------VIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 512 ~iwd~~~-----------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
.+||..+ .++++++++++++++. +.++||.++
T Consensus 268 ~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 268 HRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred EEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 6666421 2455679999999999 999999443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-12 Score=130.66 Aligned_cols=236 Identities=10% Similarity=0.095 Sum_probs=160.2
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEe-eCCCEEEEEeC-CCcEEEEEeecCee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFS-PDGQYLASAGD-DGVVRLWQVVEDER 284 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fs-pdg~~Lasgs~-Dg~I~vWd~~~~~~ 284 (686)
..+.+++..+++...++.|.+|+..... .........-.+|...+.++++. ++++++++... ++.|++|+ .+++.
T Consensus 35 v~~~~~g~l~v~~~~~~~i~~~d~~g~~--~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~ 111 (286)
T 1q7f_A 35 VAVNAQNDIIVADTNNHRIQIFDKEGRF--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQF 111 (286)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTSCE--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCE
T ss_pred EEECCCCCEEEEECCCCEEEEECCCCcE--EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcE
Confidence 3455666767777788999999865321 11111111112456679999995 67766666543 78999999 44442
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
+..+. ..+...+.++++++
T Consensus 112 ~~~~~-------------------------------------------------------------~~~~~~~~~i~~~~ 130 (286)
T 1q7f_A 112 VRKFG-------------------------------------------------------------ATILQHPRGVTVDN 130 (286)
T ss_dssp EEEEC-------------------------------------------------------------TTTCSCEEEEEECT
T ss_pred EEEec-------------------------------------------------------------CccCCCceEEEEeC
Confidence 22111 12334678999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc---CC
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI---RQ 437 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~---~~ 437 (686)
++ ++++...++.|.+||.. ++.+..+. +...+.+|+++| +++++++...++.|++||... +.+..... ..
T Consensus 131 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~ 207 (286)
T 1q7f_A 131 KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITN 207 (286)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSC
T ss_pred CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccC
Confidence 99 66666678999999964 55666664 446789999999 888888888899999999854 44433332 25
Q ss_pred cEEEEEEccCCCEEEEEecCC-cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 438 IVTAVCYRPDGQGGIVGSMMG-DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
.+..++++|+|+++++...++ .|.+||.... .... +.. ......+.+++++| ++.++++ +.|++|++|+.
T Consensus 208 ~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-~~~~--~~~----~~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 208 YPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LISA--LES----KVKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp SEEEEEECTTCCEEEEECSSSCEEEEECTTSC-EEEE--EEE----SSCCSCEEEEEEET-TTEEEEE-ETTTEEEEEEC
T ss_pred CCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-EEEE--Ecc----cCCCCcceeEEECC-CCcEEEE-CCCCeEEEEEc
Confidence 689999999999888887776 9999996543 2221 111 11223478999999 6665555 67999999986
Q ss_pred Cc
Q 005646 517 PN 518 (686)
Q Consensus 517 ~~ 518 (686)
..
T Consensus 279 ~~ 280 (286)
T 1q7f_A 279 VQ 280 (286)
T ss_dssp SC
T ss_pred cc
Confidence 54
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-12 Score=136.17 Aligned_cols=229 Identities=11% Similarity=0.065 Sum_probs=154.8
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe-eeeeeccCCCCCcceEEe
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE-RLTEVDIPEIDPSCIYFT 301 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~-~~~~~~~~~~~~~~~~~~ 301 (686)
+.|.+|+...... .. ..-.++-.....|+++|+|+++++...++.|++|+..... .+..+.....
T Consensus 69 ~~i~~~d~~~g~~--~~----~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~-------- 134 (329)
T 3fvz_A 69 DTILVIDPNNAEI--LQ----SSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ-------- 134 (329)
T ss_dssp CCEEEECTTTCCE--EE----EECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB--------
T ss_pred CcEEEEECCCCeE--Ee----ccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC--------
Confidence 4688888654322 11 0112455678999999999998888889999999975432 1111110000
Q ss_pred ecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC-CC-EEEEEE-CCCcEE
Q 005646 302 VNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSAS-IDKTVR 378 (686)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~-~L~s~s-~Dg~V~ 378 (686)
...-.++......++++| ++ ++++.+ .++.|+
T Consensus 135 ---------------------------------------------~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 135 ---------------------------------------------PGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp ---------------------------------------------CCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred ---------------------------------------------CCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 000013455678999999 67 566665 589999
Q ss_pred EEECCCCeeeeEee-CC----------CCeEEEEEeecC-CCEEEEEEcCCcEEEEecCCCcEEEEec---cCCcEEEEE
Q 005646 379 LWRVGNDHCLRVFP-HS----------NYVTCVHFNPVD-DNYFISGSIDGKVRIWAVLSCHVVDWVD---IRQIVTAVC 443 (686)
Q Consensus 379 iWd~~~~~~~~~~~-h~----------~~V~~v~fsp~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~---~~~~V~~v~ 443 (686)
+|+ ..++.+..+. .. .....|+++| + +.++++...++.|++||..+++.+.... +...+.+++
T Consensus 170 ~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~ 247 (329)
T 3fvz_A 170 QFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVP-HLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS 247 (329)
T ss_dssp EEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred EEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence 999 5677777765 21 3489999999 6 7788888889999999999888776553 445788999
Q ss_pred Ecc------CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 444 YRP------DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 444 ~sp------dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
|+| +|+.+++...+..|++||+.++++.... .....+...+.+++++|
T Consensus 248 ~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~-----~~~~~~~~~p~~ia~~~--------------------- 301 (329)
T 3fvz_A 248 YIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF-----KPVRKHFDMPHDIVASE--------------------- 301 (329)
T ss_dssp EETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE-----CCSSSCCSSEEEEEECT---------------------
T ss_pred ecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE-----cCCCCccCCeeEEEECC---------------------
Confidence 999 3333333344568999999887754321 11234556688899988
Q ss_pred cceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 518 NVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 518 ~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+|.++++...++.|++|+++.
T Consensus 302 -------dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 302 -------DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp -------TSEEEEEESSSCCEEEEEEEE
T ss_pred -------CCCEEEEECCCCEEEEEeCCc
Confidence 676677777777787777754
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.53 E-value=4e-13 Score=154.89 Aligned_cols=268 Identities=12% Similarity=0.045 Sum_probs=173.9
Q ss_pred eecCCCccceeeccc---eEEEEEcCCccccccccccCce-ecccCCceEEEEEeeCCCEEE-----EEeCCCcEEEEEe
Q 005646 209 VRLNEEDAMFCSKVQ---RVKVYHCKKRSKELSALYKGQE-IQAHDGSILTMKFSPDGQYLA-----SAGDDGVVRLWQV 279 (686)
Q Consensus 209 ~s~~~~~l~~g~~d~---~v~vw~~~~~~~~~~~~~~~~~-l~~H~~~I~~l~fspdg~~La-----sgs~Dg~I~vWd~ 279 (686)
.+++|++++....++ .-.||.......+...+..... -.+|...+..++|||||++|| +|+.+..|++||+
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 346777776665543 3455554322222222222111 235777899999999999999 4555678999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.+++.+.. ..+... ....
T Consensus 155 ~tg~~~~~------------------------------------------------------------~~~~~~--~~~~ 172 (695)
T 2bkl_A 155 DSGEWSKV------------------------------------------------------------DVIEGG--KYAT 172 (695)
T ss_dssp TTCCBCSS------------------------------------------------------------CCBSCC--TTCC
T ss_pred CCCCCcCC------------------------------------------------------------cccCcc--cccc
Confidence 88763200 000011 1257
Q ss_pred EEeeCCC-EEEEEECCCc-------------EEEEECCCCee--eeEee---CCCCeEEEEEeecCCCEEEEEEcCC---
Q 005646 360 LSWSKNN-YLLSASIDKT-------------VRLWRVGNDHC--LRVFP---HSNYVTCVHFNPVDDNYFISGSIDG--- 417 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~-------------V~iWd~~~~~~--~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg--- 417 (686)
++|+|+| .|+.++.|.. |++|++.+++. ...+. +...+..+.|+| ++++|+.++.++
T Consensus 173 ~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~ 251 (695)
T 2bkl_A 173 PKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSE 251 (695)
T ss_dssp CEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTE
T ss_pred eEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCc
Confidence 8999999 8888888876 99999998762 22332 556899999999 999888887766
Q ss_pred -cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEec----CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEE
Q 005646 418 -KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492 (686)
Q Consensus 418 -~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l 492 (686)
.|++|+..+++...+..+...+....+ ++|+ ++..+. ++.|.+||+.++.......+... .+...+..+
T Consensus 252 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~----~~~~~l~~~ 325 (695)
T 2bkl_A 252 NDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE----DSSASLLSV 325 (695)
T ss_dssp EEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC----CSSCEEEEE
T ss_pred eEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecC----CCCCeEEEE
Confidence 788888777776666666666666666 6777 555443 57899999976542100111111 113457788
Q ss_pred EEeCCCCCeEEEEeCCCcEEEEeCC-----------------cceeEcCCCCEEEEE----eCCCcEEEEeCCCCC
Q 005646 493 QFLPQDSSKVMVSCADSQVRILQGP-----------------NVIGKYKDGKHIVSA----GEDSNVYMWNCIGHE 547 (686)
Q Consensus 493 ~fsp~~~~~l~~~s~D~~I~iwd~~-----------------~~~~~~~dg~~l~sg----s~Dg~V~iWd~~~~~ 547 (686)
.|+ ++.++++...|+..+||... ..+.++++++.|+.. ...++|++||+.+++
T Consensus 326 ~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 326 SIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 887 45788888889888777321 113455688777632 345789999998876
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=145.80 Aligned_cols=180 Identities=11% Similarity=0.032 Sum_probs=127.1
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEE-------------------EEEeecCCCEEEEE----
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTC-------------------VHFNPVDDNYFISG---- 413 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~-------------------v~fsp~~~~~l~sg---- 413 (686)
.+.|+|++ +|+.++.++.|++||+.+++....+. +...... +.|+| +++.++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~ 163 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYH 163 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeecc
Confidence 47899999 89999999999999999988766665 3332222 24566 55555443
Q ss_pred -EcCCcEEEEecCCCcEEEEeccCCcEEEEEEcc-CCCEEEEEecC------CcEEEEeCCCCeeeeeeeEEeeccccCC
Q 005646 414 -SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQGGIVGSMM------GDCRFYNVSDNHLELDAEICVHSKKKAP 485 (686)
Q Consensus 414 -s~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp-dg~~l~~gs~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 485 (686)
..+..|++||+.+++......+...+..+.|+| +|+.|+..+.+ ..|.+||+.+++..... . ...
T Consensus 164 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-----~--~~~ 236 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK-----E--HAE 236 (396)
T ss_dssp TCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS-----C--CCT
T ss_pred CCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee-----c--cCC
Confidence 356689999999988877777778899999999 88877776543 36888898765432110 0 001
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCC-----CcEEEEeCCcc------------eeEcC-CCCEEEEEe--------------
Q 005646 486 CKRITGFQFLPQDSSKVMVSCAD-----SQVRILQGPNV------------IGKYK-DGKHIVSAG-------------- 533 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~s~D-----~~I~iwd~~~~------------~~~~~-dg~~l~sgs-------------- 533 (686)
...+..+.|+| +++.|+.++.+ +.|++||..+. ..++| ||++|++++
T Consensus 237 ~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~ 315 (396)
T 3c5m_A 237 GESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVADADSYN 315 (396)
T ss_dssp TEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEEEEEECSSSSEEEEEECCC----------C
T ss_pred CccccceEECC-CCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCCCCccCCCCceEEEecCCcceeeccccccc
Confidence 23478899999 66766665543 44999986431 45788 999998865
Q ss_pred --CCCcEEEEeCCCCC
Q 005646 534 --EDSNVYMWNCIGHE 547 (686)
Q Consensus 534 --~Dg~V~iWd~~~~~ 547 (686)
.++.|++||+.+++
T Consensus 316 ~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 316 IENDPFLYVLNTKAKS 331 (396)
T ss_dssp CCCCCEEEEEETTTTB
T ss_pred cCCCCcEEEEecccCc
Confidence 34789999998765
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.5e-12 Score=132.44 Aligned_cols=235 Identities=10% Similarity=0.079 Sum_probs=152.7
Q ss_pred CCCcccee---------eccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC---Cc--EEEE
Q 005646 212 NEEDAMFC---------SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GV--VRLW 277 (686)
Q Consensus 212 ~~~~l~~g---------~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~--I~vW 277 (686)
+|++++.. ..++.|.+|+...... ..+ ..+..++|+|||++||.++.+ +. |.+|
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~--------~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~ 90 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNAR--------RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVA 90 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE--------EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCce--------EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEE
Confidence 66665543 2367788888765321 112 468899999999999988754 33 6666
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCe
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 357 (686)
++.+++... +..+.. +
T Consensus 91 ~~~~g~~~~---------------------------------------------------------------l~~~~~-~ 106 (347)
T 2gop_A 91 DLETLSSKK---------------------------------------------------------------ILEAKN-I 106 (347)
T ss_dssp ETTTTEEEE---------------------------------------------------------------EEEESE-E
T ss_pred ECCCCceEE---------------------------------------------------------------EEcCCC-c
Confidence 766654211 111223 8
Q ss_pred eEEEeeCCC-EEEEEEC---------------------------CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCE
Q 005646 358 LDLSWSKNN-YLLSASI---------------------------DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY 409 (686)
Q Consensus 358 ~~l~~s~~~-~L~s~s~---------------------------Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~ 409 (686)
..++|+|++ .|+.++. ...|.+||+.+++.+..+... .+..++|+| ++ +
T Consensus 107 ~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~sp-dg-~ 183 (347)
T 2gop_A 107 RSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHR-DK-I 183 (347)
T ss_dssp EEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEET-TE-E
T ss_pred cceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCC-Ce-E
Confidence 889999998 6776653 257999999998874444433 889999999 88 8
Q ss_pred EEEEEcCC-------cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecC--------CcEEEEeCCCCeeeeee
Q 005646 410 FISGSIDG-------KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM--------GDCRFYNVSDNHLELDA 474 (686)
Q Consensus 410 l~sgs~Dg-------~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~d--------g~i~iwd~~~~~~~~~~ 474 (686)
++++..++ ...||.+.+++...+..+ ..+..+ +|||+.|+.++.+ ..|++|| +++...
T Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~-- 256 (347)
T 2gop_A 184 VVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG-- 256 (347)
T ss_dssp EEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE--
T ss_pred EEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEe--
Confidence 88776652 344554446665555544 455544 9999999887754 3688888 333221
Q ss_pred eEEeeccccCCCCCeEE-EEEeCCCCCeEEEEeCCCcEEEEeCCc--------------ceeEcCCCCEEEEEeCCCcE-
Q 005646 475 EICVHSKKKAPCKRITG-FQFLPQDSSKVMVSCADSQVRILQGPN--------------VIGKYKDGKHIVSAGEDSNV- 538 (686)
Q Consensus 475 ~~~~~~~~~~~~~~I~~-l~fsp~~~~~l~~~s~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs~Dg~V- 538 (686)
....+...+.. +.|+ ++ ++++++.++.++|| ..+ .+.+++ .++++++.++..
T Consensus 257 ------l~~~~~~~~~~~~~~s--dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~ 324 (347)
T 2gop_A 257 ------ILDEVDRGVGQAKIKD--GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETATRLR 324 (347)
T ss_dssp ------SSTTCCSEEEEEEEET--TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSSSCC
T ss_pred ------ccccCCcccCCccEEc--Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCCChH
Confidence 11233456775 8887 45 88888899999998 531 134555 677777777664
Q ss_pred EEEeCC
Q 005646 539 YMWNCI 544 (686)
Q Consensus 539 ~iWd~~ 544 (686)
.||.++
T Consensus 325 ~l~~~~ 330 (347)
T 2gop_A 325 ELFTWD 330 (347)
T ss_dssp EEEEES
T ss_pred HheEeC
Confidence 677665
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.1e-12 Score=145.97 Aligned_cols=230 Identities=10% Similarity=0.087 Sum_probs=157.8
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCC-----cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDG-----VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg-----~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
+|...+..++|||||++||.+..++ .|++||+.+++....
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~----------------------------------- 166 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD----------------------------------- 166 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-----------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-----------------------------------
Confidence 4556789999999999999876543 899999988873221
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCc----------------EEEEECCCC
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKT----------------VRLWRVGND 385 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~----------------V~iWd~~~~ 385 (686)
.+. + ..+..++|+||| .|+.++.++. |++|++.++
T Consensus 167 --------------------------~~~-~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~ 218 (710)
T 2xdw_A 167 --------------------------VLE-R-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD 218 (710)
T ss_dssp --------------------------EEE-E-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC
T ss_pred --------------------------ccc-C-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCC
Confidence 011 1 125689999999 8888888766 999999887
Q ss_pred eee--eEee---CCCCeEEEEEeecCCCEEEEEEc-----CCcEEEEecCC------C--cEEEEeccCCcEEEEEEccC
Q 005646 386 HCL--RVFP---HSNYVTCVHFNPVDDNYFISGSI-----DGKVRIWAVLS------C--HVVDWVDIRQIVTAVCYRPD 447 (686)
Q Consensus 386 ~~~--~~~~---h~~~V~~v~fsp~~~~~l~sgs~-----Dg~V~iwd~~~------~--~~~~~~~~~~~V~~v~~spd 447 (686)
+.. ..+. |...+..+.|+| ++++|+.++. +..|++||+.+ + ....+..+...+.. .|+|+
T Consensus 219 ~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~d 296 (710)
T 2xdw_A 219 QSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNE 296 (710)
T ss_dssp GGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEE
T ss_pred cccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEecc
Confidence 632 2222 456788999999 9999888775 56899999986 5 34555555555554 58899
Q ss_pred CCEEEEEecCC----cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCc--EEEEeCCc---
Q 005646 448 GQGGIVGSMMG----DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ--VRILQGPN--- 518 (686)
Q Consensus 448 g~~l~~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~--I~iwd~~~--- 518 (686)
|+.|+..+..+ .|.+||+.++.......+..+ .....+..+.|++ ++.++++...|+. |.+|+..+
T Consensus 297 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~----~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~ 371 (710)
T 2xdw_A 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE----HEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGAL 371 (710)
T ss_dssp TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC----CSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCC----CCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCE
Confidence 99888776543 599999987532100111111 0113578899986 6678888888875 55666521
Q ss_pred ------------ceeEcCCCCEEEEE-e---CCCcEEEEeCCCCC
Q 005646 519 ------------VIGKYKDGKHIVSA-G---EDSNVYMWNCIGHE 547 (686)
Q Consensus 519 ------------~~~~~~dg~~l~sg-s---~Dg~V~iWd~~~~~ 547 (686)
.+.++++++.|+.. + ..++|++||+.+++
T Consensus 372 ~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 372 LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 13355677666533 2 45789999998765
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-11 Score=127.67 Aligned_cols=251 Identities=7% Similarity=-0.042 Sum_probs=172.6
Q ss_pred eeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcce
Q 005646 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCI 298 (686)
Q Consensus 219 g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~ 298 (686)
++.++.|.++|....... ...+....-.........|.+. ++++.++...++.|.+||..+++.+..+.
T Consensus 13 g~~~~~l~~~d~~t~~~~-~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~--------- 81 (328)
T 3dsm_A 13 QYSNATLSYYDPATCEVE-NEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT--------- 81 (328)
T ss_dssp TSCCBEEEEEETTTTEEE-CSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE---------
T ss_pred CCCCceEEEEECCCCEEh-hhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC---------
Confidence 345889999998754321 1111100001122346778774 45555666667999999998887443331
Q ss_pred EEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEE-CCCcE
Q 005646 299 YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSAS-IDKTV 377 (686)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s-~Dg~V 377 (686)
.......+++++++.|+.+. .++.|
T Consensus 82 ------------------------------------------------------~~~~p~~i~~~~~g~lyv~~~~~~~v 107 (328)
T 3dsm_A 82 ------------------------------------------------------GFTSPRYIHFLSDEKAYVTQIWDYRI 107 (328)
T ss_dssp ------------------------------------------------------CCSSEEEEEEEETTEEEEEEBSCSEE
T ss_pred ------------------------------------------------------CCCCCcEEEEeCCCeEEEEECCCCeE
Confidence 22456788998888555555 89999
Q ss_pred EEEECCCCeeeeEeeCCC------CeEEEEEeecCCCEEEEEE-cCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCE
Q 005646 378 RLWRVGNDHCLRVFPHSN------YVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG 450 (686)
Q Consensus 378 ~iWd~~~~~~~~~~~h~~------~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~ 450 (686)
.+||..+++....+.-.. ....+++ . ++.++++.. .++.|.+||+.+++++...........++++|+|++
T Consensus 108 ~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l 185 (328)
T 3dsm_A 108 FIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKM 185 (328)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEE
T ss_pred EEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCE
Confidence 999999999888777433 6677888 4 555555544 489999999999998877766666788999999987
Q ss_pred EEEEecC----------CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc--
Q 005646 451 GIVGSMM----------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-- 518 (686)
Q Consensus 451 l~~gs~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-- 518 (686)
++++..+ +.|.++|..++++.... .+. .......++|+| +++.|.++.. .|.+||..+
T Consensus 186 ~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~--~~~-----~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 186 WTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF--KFK-----LGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp EEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE--ECC-----TTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSS
T ss_pred EEEECCCccCCccccCCceEEEEECCCCeEEEEE--ecC-----CCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCc
Confidence 7776554 78999999888754321 111 123588999999 6677766654 888998532
Q ss_pred ---------------ceeEcC-CCCEEEEE----eCCCcEEEEeCCCCC
Q 005646 519 ---------------VIGKYK-DGKHIVSA----GEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 ---------------~~~~~~-dg~~l~sg----s~Dg~V~iWd~~~~~ 547 (686)
.+++.| +++++++. ..++.|.+||.+ ++
T Consensus 256 ~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 256 VPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp CCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred eeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 256776 56666666 678999999987 54
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-11 Score=125.65 Aligned_cols=226 Identities=10% Similarity=-0.005 Sum_probs=158.3
Q ss_pred eecccCCceEEEEEeeCCC-EEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 245 EIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
.+..+.....+++|+|+|+ +++++..++.|..|+..++ ..
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~------------------------------------- 62 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS------------------------------------- 62 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE-------------------------------------
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE-------------------------------------
Confidence 3444566788999999998 7888888999999998654 11
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-----CCCCe
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYV 397 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-----h~~~V 397 (686)
.+..+...+.+++++++| ++++...++.|.+||..+++...... ....+
T Consensus 63 -------------------------~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 117 (296)
T 3e5z_A 63 -------------------------PEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSP 117 (296)
T ss_dssp -------------------------EEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCC
T ss_pred -------------------------EEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCC
Confidence 122345678899999999 55555567899999998887654432 22456
Q ss_pred EEEEEeecCCCEEEEE----Ec-------------CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcE
Q 005646 398 TCVHFNPVDDNYFISG----SI-------------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDC 460 (686)
Q Consensus 398 ~~v~fsp~~~~~l~sg----s~-------------Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i 460 (686)
+.++++| +++++++. +. .+.|..++.. ++..........+..++|+|+|+.+++.+.++.|
T Consensus 118 ~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i 195 (296)
T 3e5z_A 118 NDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNAT 195 (296)
T ss_dssp CCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEE
T ss_pred CCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeE
Confidence 7899999 89988873 31 3456666665 6665556666778999999999999777788999
Q ss_pred EEEeCC-CCee-eeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC-------------cceeE-cC
Q 005646 461 RFYNVS-DNHL-ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-------------NVIGK-YK 524 (686)
Q Consensus 461 ~iwd~~-~~~~-~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~-------------~~~~~-~~ 524 (686)
++|++. ++.+ ..... . ..+...+.++++.+ ++.++++. ++.|.+|+.. +.+++ .+
T Consensus 196 ~~~~~~~~g~~~~~~~~--~----~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~~~~~~f~~~ 266 (296)
T 3e5z_A 196 HRYCLNARGETEYQGVH--F----TVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPDGDELGRVLTPQTTSNLCFGGP 266 (296)
T ss_dssp EEEEECSSSCEEEEEEE--E----CCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTTSCEEEEEECSSCCCEEEEEST
T ss_pred EEEEECCCCcCcCCCeE--e----eCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCCCCEEEEEECCCCceeEEEECC
Confidence 999997 4443 11111 1 11334567899999 66655555 8889999753 33566 47
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC
Q 005646 525 DGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 525 dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
+++.|++++.++ +.-++..+.
T Consensus 267 d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 267 EGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp TSCEEEEEETTE-EEEEECSCC
T ss_pred CCCEEEEEcCCe-EEEEEcccc
Confidence 888898888763 444455443
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.1e-12 Score=131.53 Aligned_cols=167 Identities=13% Similarity=0.137 Sum_probs=119.8
Q ss_pred cCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCe-eeeEee----------CCCCeEEEEEeecCCCEEEEEE-cCCc
Q 005646 352 GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-CLRVFP----------HSNYVTCVHFNPVDDNYFISGS-IDGK 418 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~-~~~~~~----------h~~~V~~v~fsp~~~~~l~sgs-~Dg~ 418 (686)
++......++++++| ++++...++.|++||..... .+..+. +-.....|+|+|.++.++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 344578899999999 77777788999999986542 555552 3346899999985677777776 6999
Q ss_pred EEEEecCCCcEEEEecc-----------CCcEEEEEEccC-CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCC
Q 005646 419 VRIWAVLSCHVVDWVDI-----------RQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC 486 (686)
Q Consensus 419 V~iwd~~~~~~~~~~~~-----------~~~V~~v~~spd-g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 486 (686)
|++|| .++..+..... -..+..++++|+ |+++++...++.|++||..++++..... ...+.
T Consensus 168 I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~------~~~~~ 240 (329)
T 3fvz_A 168 IVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK------HASFG 240 (329)
T ss_dssp EEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC------CTTTT
T ss_pred EEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe------ccccC
Confidence 99999 55666544432 123889999998 7777777789999999998666543211 12344
Q ss_pred CCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 487 KRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 487 ~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..+.+++|+| ..++.. +|+..++...+..|++|++.+++
T Consensus 241 ~~~~~~~~~p---g~~~~~-------------------~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 241 RNVFAISYIP---GFLFAV-------------------NGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp TCEEEEEEET---TEEEEE-------------------ECCCCTTCSCCCCEEEEETTTCC
T ss_pred CCcceeeecC---CEEEEe-------------------CCCEEeccCCCcEEEEEEcCCCe
Confidence 6688899988 233333 45555566677899999988765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=5.8e-12 Score=132.95 Aligned_cols=231 Identities=10% Similarity=0.060 Sum_probs=151.3
Q ss_pred EEEeeCCC-EEEEEE----------CCCcEEEEECCCCeeeeEee-C------CCCeEEEEEeecCCCEEEEEEc--CCc
Q 005646 359 DLSWSKNN-YLLSAS----------IDKTVRLWRVGNDHCLRVFP-H------SNYVTCVHFNPVDDNYFISGSI--DGK 418 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s----------~Dg~V~iWd~~~~~~~~~~~-h------~~~V~~v~fsp~~~~~l~sgs~--Dg~ 418 (686)
.++|+|++ +|+++. .+++|.+||+.+.+.+..+. . ......++|+| ++++|+++.. +++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~ 132 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATS 132 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC-CCCEEEEECCCCCCe
Confidence 89999999 777765 36789999999998888775 2 35677899999 9999998875 589
Q ss_pred EEEEecCCCcEEEE-eccCCcEEEEEEccCC-CEEEEEecCCcEEEEeCCC-CeeeeeeeEEeeccccCCCCCeEEEEEe
Q 005646 419 VRIWAVLSCHVVDW-VDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFL 495 (686)
Q Consensus 419 V~iwd~~~~~~~~~-~~~~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~I~~l~fs 495 (686)
|.+||+.+++++.. +..... ..+.+.|++ ..+++.+.||.+.+|++.. ++.... ............+ ..+.+.
T Consensus 133 v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~--~~~~~~~~~~~~~-~~~~~~ 208 (361)
T 2oiz_A 133 IGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ--SRSKQMFSVKDDP-IFIAPA 208 (361)
T ss_dssp EEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE--EECCCCSCTTTSC-BCSCCE
T ss_pred EEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee--ccccceEcCCCCc-eEEEec
Confidence 99999999988876 665443 335677876 6778888999999999865 433211 0000001111111 122335
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCc---------------------------ceeEcCCCCEEEEEeC-----------CCc
Q 005646 496 PQDSSKVMVSCADSQVRILQGPN---------------------------VIGKYKDGKHIVSAGE-----------DSN 537 (686)
Q Consensus 496 p~~~~~l~~~s~D~~I~iwd~~~---------------------------~~~~~~dg~~l~sgs~-----------Dg~ 537 (686)
+ ++..++..+.++.|.++|... .+++++++++++.+.. .+.
T Consensus 209 ~-~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~ 287 (361)
T 2oiz_A 209 L-DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAE 287 (361)
T ss_dssp E-CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSE
T ss_pred c-cCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCce
Confidence 5 445666666778888888531 1578889888877653 348
Q ss_pred EEEEeCCCCCCCCccccccccccccccCCcEEEecCCCC----------cCCCCCCC--CcccccC--CCCCcccccCCC
Q 005646 538 VYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGL----------KCGNAEKE--PQLHVSD--DDSPENLAFAPA 603 (686)
Q Consensus 538 V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~----------~~~~~~~g--~~l~~~~--~~~~~~~~~spd 603 (686)
|.+||+.+.+.. .++.... ...++++++|. .+||..++ +.+..+. +.....+.++||
T Consensus 288 v~viD~~t~~~v--------~~i~~~~-p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 288 IWVMDTKTKQRV--------ARIPGRD-ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp EEEEETTTTEEE--------EEEECTT-CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred EEEEECCCCcEE--------EEEecCC-eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence 999999887622 1111111 23444444432 56777787 7666642 344556677777
Q ss_pred c
Q 005646 604 R 604 (686)
Q Consensus 604 ~ 604 (686)
+
T Consensus 359 G 359 (361)
T 2oiz_A 359 G 359 (361)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.41 E-value=9.3e-12 Score=129.40 Aligned_cols=185 Identities=10% Similarity=0.108 Sum_probs=134.9
Q ss_pred EeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEe-eCCCCeEEEEEeecCCCEEEEEEcC----CcEEEE
Q 005646 349 EFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSID----GKVRIW 422 (686)
Q Consensus 349 ~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~-~h~~~V~~v~fsp~~~~~l~sgs~D----g~V~iw 422 (686)
.+..+...+.+++|++++ +++++..++.|.+||..+++..... .+...+.+++++| +++++++...+ +.|.+|
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~ 117 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAA 117 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEE
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEE
Confidence 344566677899999999 6667788999999999988776655 3678899999999 88888877766 689999
Q ss_pred ecCCCcEEEEe---ccCCcEEEEEEccCCCEEEEEec------CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 423 AVLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 423 d~~~~~~~~~~---~~~~~V~~v~~spdg~~l~~gs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
|..++...... .....+..++++|+|+++++... .+.|..||..+++..... . ....+.+++
T Consensus 118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~-----~~~~~~~i~ 188 (333)
T 2dg1_A 118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII----Q-----NISVANGIA 188 (333)
T ss_dssp CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE----E-----EESSEEEEE
T ss_pred eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee----c-----CCCcccceE
Confidence 99888765332 23456899999999987776653 356777776554432211 0 113478899
Q ss_pred EeCCCCCeE-EEEeCCCcEEEEeCCc-----------------------ceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 494 FLPQDSSKV-MVSCADSQVRILQGPN-----------------------VIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 494 fsp~~~~~l-~~~s~D~~I~iwd~~~-----------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
|+| +++.| ++...++.|.+|+..+ .+++.++|+++++...++.|++|+.+
T Consensus 189 ~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 189 LST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp ECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ECC-CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 999 66644 5556678899998631 13455688888888888999999974
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-11 Score=122.56 Aligned_cols=226 Identities=8% Similarity=-0.039 Sum_probs=153.6
Q ss_pred cceeeecCCC-ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 205 EGERVRLNEE-DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 205 ~~~~~s~~~~-~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
+...+.++++ .++++..++.|.+|+.... . +.+..+...+.+++|+++|+++++...++.|.+||..+++
T Consensus 31 eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~--------~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L--------SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE 101 (296)
T ss_dssp EEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E--------EEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC
T ss_pred cCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e--------EEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc
Confidence 4567778887 6777888999999987654 1 2344567789999999999988887777899999987765
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEec-cCCCCeeEEEe
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH-GHSGEILDLSW 362 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~ 362 (686)
...... ... .....+.++++
T Consensus 102 ~~~~~~-----------------------------------------------------------~~~~~~~~~~~~i~~ 122 (296)
T 3e5z_A 102 WESIAD-----------------------------------------------------------SFEGKKLNSPNDVCL 122 (296)
T ss_dssp EEEEEC-----------------------------------------------------------EETTEECCCCCCEEE
T ss_pred EEEEee-----------------------------------------------------------ccCCCCCCCCCCEEE
Confidence 221110 000 01235678999
Q ss_pred eCCC-EEEE----EEC-------------CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEec
Q 005646 363 SKNN-YLLS----ASI-------------DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (686)
Q Consensus 363 s~~~-~L~s----~s~-------------Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~ 424 (686)
+|+| ++++ ++. .+.|..++.. ++......+......++|+| +++++++.+.++.|++||+
T Consensus 123 d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~ 200 (296)
T 3e5z_A 123 APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCL 200 (296)
T ss_dssp CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEE
Confidence 9999 5555 221 2345555554 44444444677889999999 8988877778899999999
Q ss_pred C-CCcE---EEEe-ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 425 L-SCHV---VDWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 425 ~-~~~~---~~~~-~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
. ++.+ .... .....+..++++++|+++++. ++.|.+||... +.... ...+.. +++++|...++
T Consensus 201 ~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g-~~~~~--------~~~~~~-~~~~~f~~~d~ 268 (296)
T 3e5z_A 201 NARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG-DELGR--------VLTPQT-TSNLCFGGPEG 268 (296)
T ss_dssp CSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS-CEEEE--------EECSSC-CCEEEEESTTS
T ss_pred CCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC-CEEEE--------EECCCC-ceeEEEECCCC
Confidence 7 5554 2222 234456789999999866655 88999999873 32211 111224 88999963377
Q ss_pred CeEEEEeCCCcEE
Q 005646 500 SKVMVSCADSQVR 512 (686)
Q Consensus 500 ~~l~~~s~D~~I~ 512 (686)
..|++++.++..+
T Consensus 269 ~~L~v~t~~~l~~ 281 (296)
T 3e5z_A 269 RTLYMTVSTEFWS 281 (296)
T ss_dssp CEEEEEETTEEEE
T ss_pred CEEEEEcCCeEEE
Confidence 8888888765433
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.9e-11 Score=124.06 Aligned_cols=232 Identities=8% Similarity=-0.003 Sum_probs=161.7
Q ss_pred cCCCcc-ceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005646 211 LNEEDA-MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (686)
Q Consensus 211 ~~~~~l-~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~ 289 (686)
.+++.+ ++...++.|.++|...... ..++. .......|++++++++.++...++.|.+||..+++....+.
T Consensus 51 ~~~~~lyv~~~~~~~v~viD~~t~~~-------~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 51 IRDGIGWIVVNNSHVIFAIDINTFKE-------VGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp EETTEEEEEEGGGTEEEEEETTTCCE-------EEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred EECCEEEEEEcCCCEEEEEECcccEE-------EEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 344444 4455678999999865432 11222 34678899999999555554488999999998887554443
Q ss_pred cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEE
Q 005646 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL 369 (686)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~ 369 (686)
.... .++......+++ .++.|+
T Consensus 123 ~g~~---------------------------------------------------------~~~~~~p~~i~~-~~~~ly 144 (328)
T 3dsm_A 123 CPDM---------------------------------------------------------DMESGSTEQMVQ-YGKYVY 144 (328)
T ss_dssp CTTC---------------------------------------------------------CTTTCBCCCEEE-ETTEEE
T ss_pred cCCc---------------------------------------------------------cccCCCcceEEE-ECCEEE
Confidence 2110 011123345666 445555
Q ss_pred EEE--CCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC----------CcEEEEecCCCcEEEEecc--
Q 005646 370 SAS--IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID----------GKVRIWAVLSCHVVDWVDI-- 435 (686)
Q Consensus 370 s~s--~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D----------g~V~iwd~~~~~~~~~~~~-- 435 (686)
.+. .+++|.++|+.+++.+..+........++++| ++++++++..+ +.|.++|..++++......
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~ 223 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL 223 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC
Confidence 554 48999999999999988887656678899999 88877776655 7899999999988765544
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE----eCCCcE
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS----CADSQV 511 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~----s~D~~I 511 (686)
...+..++|+|+++.++++.. .|.+||+.++++.....+ ........+++++|+++.++++. ..++.|
T Consensus 224 g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~------~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 224 GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFL------EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSB------CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeee------cCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 346899999999999988765 899999988765321100 11135689999999666666766 678889
Q ss_pred EEEeCC
Q 005646 512 RILQGP 517 (686)
Q Consensus 512 ~iwd~~ 517 (686)
.+||..
T Consensus 296 ~v~d~~ 301 (328)
T 3dsm_A 296 YRYSPQ 301 (328)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 988853
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.2e-10 Score=125.31 Aligned_cols=259 Identities=10% Similarity=0.087 Sum_probs=176.5
Q ss_pred CCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEee--cCeeeeeecc
Q 005646 213 EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV--EDERLTEVDI 290 (686)
Q Consensus 213 ~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~--~~~~~~~~~~ 290 (686)
+..+++...++.|.|+|..+... + .++. ....+..+.|+|||++|++++.|+.|.+||+. +++.+..+
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v-~------~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i-- 236 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEI-K------TVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI-- 236 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCE-E------EEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE--
T ss_pred ceEEEEeCCCCeEEEEECCCCeE-E------EEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE--
Confidence 34566777889999999865432 1 1222 12356789999999999999999999999985 54432222
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee----CCC
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS----KNN 366 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s----~~~ 366 (686)
... .....++|+ |+|
T Consensus 237 ------------------------------------------------------------~~G-~~P~~ia~s~~~~pDG 255 (567)
T 1qks_A 237 ------------------------------------------------------------KIG-SEARSIETSKMEGWED 255 (567)
T ss_dssp ------------------------------------------------------------ECC-SEEEEEEECCSTTCTT
T ss_pred ------------------------------------------------------------ecC-CCCceeEEccccCCCC
Confidence 111 234689999 688
Q ss_pred -EEEEEE-CCCcEEEEECCCCeeeeEeeC------------CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE--
Q 005646 367 -YLLSAS-IDKTVRLWRVGNDHCLRVFPH------------SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-- 430 (686)
Q Consensus 367 -~L~s~s-~Dg~V~iWd~~~~~~~~~~~h------------~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-- 430 (686)
+++++. .+++|.++|..+.+.++.+.- ...+..+.+++....+++....+|+|.++|..+....
T Consensus 256 k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v 335 (567)
T 1qks_A 256 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT 335 (567)
T ss_dssp TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE
T ss_pred CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee
Confidence 655554 569999999999998887651 1267889888843445555566799999999876432
Q ss_pred EEeccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe-CC
Q 005646 431 DWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-AD 508 (686)
Q Consensus 431 ~~~~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s-~D 508 (686)
..+........+.|+|+|++++++. .++.|.++|+.++++..... . +....|.++-..+ ++|+.+...++.. .+
T Consensus 336 ~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~--v-gg~~Phpg~g~~~-~~p~~g~v~~t~~~g~ 411 (567)
T 1qks_A 336 TEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED--T-GGQTPHPGRGANF-VHPTFGPVWATSHMGD 411 (567)
T ss_dssp EEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE--C-SSSSBCCTTCEEE-EETTTEEEEEEEBSSS
T ss_pred eeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe--c-cCcCCCCccceee-ECCCCCcEEEeCCCCC
Confidence 3344555678899999999987765 57899999999988654321 1 0123333222222 5773344444433 56
Q ss_pred CcEEEEeCCc----------------------ceeEcCCCCEEEEEeC-------CCcEEEEeCCCC
Q 005646 509 SQVRILQGPN----------------------VIGKYKDGKHIVSAGE-------DSNVYMWNCIGH 546 (686)
Q Consensus 509 ~~I~iwd~~~----------------------~~~~~~dg~~l~sgs~-------Dg~V~iWd~~~~ 546 (686)
+.|.++|..+ .+..+|++++|.+... .+.|.|+|+.+.
T Consensus 412 ~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 412 DSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 8899998543 1456789999998763 458999999875
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.3e-11 Score=124.96 Aligned_cols=139 Identities=12% Similarity=0.148 Sum_probs=93.2
Q ss_pred CeeEEEeeCCCEEEEEECCC-------cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC--------CcEE
Q 005646 356 EILDLSWSKNNYLLSASIDK-------TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID--------GKVR 420 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~Dg-------~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D--------g~V~ 420 (686)
.+..++|+|+++++++..+. ...||.+.+++......+ ..+..+ +| ++++|+.++.+ ..|.
T Consensus 172 ~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~ 247 (347)
T 2gop_A 172 RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLY 247 (347)
T ss_dssp TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEE
T ss_pred CcccccCCCCeEEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CC-CCCEEEEEEccccCCccccceEE
Confidence 67889999999555555442 445555546655444445 555554 89 89888877754 3688
Q ss_pred EEecCCCcEEEEec-cCCcEEE-EEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC
Q 005646 421 IWAVLSCHVVDWVD-IRQIVTA-VCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (686)
Q Consensus 421 iwd~~~~~~~~~~~-~~~~V~~-v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~ 498 (686)
+|| +++...... +...+.. +.|+ || .+++++.++.++|| +.+++.. .+. .+...|.++.|+|
T Consensus 248 ~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-----~~~----~~~~~v~~~~~s~-- 311 (347)
T 2gop_A 248 IYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-----PIA----KGRHWIMGFDVDE-- 311 (347)
T ss_dssp EEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-----EEE----CSSSEEEEEEESS--
T ss_pred EEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-----EEe----cCCCeEEeeeeeC--
Confidence 888 666554443 4567776 8999 98 88899999999999 8744321 111 1245689999998
Q ss_pred CCeEEEEeCCCcE-EEEe
Q 005646 499 SSKVMVSCADSQV-RILQ 515 (686)
Q Consensus 499 ~~~l~~~s~D~~I-~iwd 515 (686)
..+++++.++.. ++|.
T Consensus 312 -~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 312 -IVVYLKETATRLRELFT 328 (347)
T ss_dssp -SEEEEEECSSSCCEEEE
T ss_pred -cEEEEEcCCCChHHheE
Confidence 577777766654 5654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.6e-11 Score=119.79 Aligned_cols=216 Identities=9% Similarity=0.018 Sum_probs=154.1
Q ss_pred CCccceeeccceEEEEEcCCccccccccccCceecccC-CceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccC
Q 005646 213 EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHD-GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 213 ~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
++.+++++.++.|.+||....... ..+..|. ..+.++.++|+|++|+ +.++.|+.||. +++.+..+..
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~-------w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~- 73 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIV-------WEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA- 73 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEE-------EEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC-
T ss_pred CcEEEeeCCCCEEEEEECCCCeEE-------EEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC-
Confidence 467888999999999987544321 2233344 4688999999999988 34778999998 7764443321
Q ss_pred CCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEE
Q 005646 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLS 370 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s 370 (686)
++...+.++.+.++| .|++
T Consensus 74 ------------------------------------------------------------~~~~~~~~~~~~~dG~~lv~ 93 (276)
T 3no2_A 74 ------------------------------------------------------------PAGCEMQTARILPDGNALVA 93 (276)
T ss_dssp ------------------------------------------------------------CTTCEEEEEEECTTSCEEEE
T ss_pred ------------------------------------------------------------CCCccccccEECCCCCEEEE
Confidence 112356788889999 7777
Q ss_pred EEC-CCcEEEEECCCCeeeeEeeC-------CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEE
Q 005646 371 ASI-DKTVRLWRVGNDHCLRVFPH-------SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAV 442 (686)
Q Consensus 371 ~s~-Dg~V~iWd~~~~~~~~~~~h-------~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v 442 (686)
.+. ++.|..+|. +++.+..+.. ......+++.+ +++++++...++.|..||.. ++.+........+.++
T Consensus 94 ~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~ 170 (276)
T 3no2_A 94 WCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSS 170 (276)
T ss_dssp EESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEE
T ss_pred ecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccce
Confidence 776 777877775 6777766641 12345567788 99999999999999999998 8887666655667788
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~ 505 (686)
...++|+.+++++.++.|..+|..+++...... ...........+.+++..+ ++..+++.
T Consensus 171 ~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~--~~~~~~~~l~~~~~~~~~~-~G~i~v~~ 230 (276)
T 3no2_A 171 AFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN--ANDIEGVQLFFVAQLFPLQ-NGGLYICN 230 (276)
T ss_dssp EECTTSCEEEECBTTSEEEEECTTTCCEEEEEE--GGGSBSCCCSEEEEEEECT-TSCEEEEE
T ss_pred eEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec--CCCCCCccccccccceEcC-CCCEEEEe
Confidence 889999999998888899999999887755332 1110111234477888888 55655554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.38 E-value=5.2e-11 Score=119.48 Aligned_cols=234 Identities=8% Similarity=-0.075 Sum_probs=155.1
Q ss_pred eeeecCCCccc-eeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 207 ERVRLNEEDAM-FCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 207 ~~~s~~~~~l~-~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
..+.+++...+ +...++.|.+|+........ . ...+...+.+|+++++|+++++.. ++.|.+||.......
T Consensus 29 i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~----~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 29 VAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---L----PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp EEECTTCCEEEEECSSSCEEEEECC-----EE---C----CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred eEECCCCCEEEEccCCCCcEEEecCCCcccce---E----eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 34556666555 44677889999764432111 0 112345688999999998666665 889999987543210
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
.+. ......+.++++.++
T Consensus 101 -~~~-------------------------------------------------------------~~~~~~p~~i~~~~~ 118 (270)
T 1rwi_B 101 -VLP-------------------------------------------------------------FDGLNYPEGLAVDTQ 118 (270)
T ss_dssp -ECC-------------------------------------------------------------CCSCSSEEEEEECTT
T ss_pred -eee-------------------------------------------------------------cCCcCCCcceEECCC
Confidence 000 012245789999999
Q ss_pred C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec-cCCcEEEE
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-IRQIVTAV 442 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~~~~V~~v 442 (686)
+ ++++...++.|.+|+..+........ ....+.+|+++| +++++++...++.|.+||..+........ ....+..+
T Consensus 119 g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i 197 (270)
T 1rwi_B 119 GAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGI 197 (270)
T ss_dssp CCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEE
T ss_pred CCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEE
Confidence 8 56666678899999876554432222 345688999999 88888777778899999998776554322 22668999
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeE
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK 522 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~ 522 (686)
+++++|..+++...++.|.+|+..+..... ....+...+.++++.+
T Consensus 198 ~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~--------~~~~~~~~p~~i~~~~-------------------------- 243 (270)
T 1rwi_B 198 AVDEAGTVYVTEHNTNQVVKLLAGSTTSTV--------LPFTGLNTPLAVAVDS-------------------------- 243 (270)
T ss_dssp EECTTCCEEEEETTTSCEEEECTTCSCCEE--------CCCCSCSCEEEEEECT--------------------------
T ss_pred EECCCCCEEEEECCCCcEEEEcCCCCccee--------eccCCCCCceeEEECC--------------------------
Confidence 999999777777778899999987654321 0111234578888888
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 523 YKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 523 ~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+|+++++...++.|+++++...+
T Consensus 244 --~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 244 --DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp --TCCEEEEEGGGTEEEEECCCGGG
T ss_pred --CCCEEEEECCCCEEEEEcCCCcc
Confidence 66666666777777777776543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-09 Score=114.16 Aligned_cols=254 Identities=13% Similarity=0.044 Sum_probs=166.8
Q ss_pred eEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe----------CCCcEEEEEeecCeeeeeeccCCC
Q 005646 224 RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 224 ~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
.|.++|..+... . .++.....+ .++|+|||++|+.+. .++.|.+||..+.+.+..+.....
T Consensus 48 ~v~v~D~~t~~~-~------~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~ 118 (373)
T 2mad_H 48 QQWVLDAGSGSI-L------GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA 118 (373)
T ss_pred EEEEEECCCCeE-E------EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCc
Confidence 788998765432 1 233333444 999999999999886 367899999988776555432200
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s 372 (686)
.+.. +...-..++|+|+| +|+.+.
T Consensus 119 -----------------------------------------------------~~~~--~g~~p~~~~~spDG~~l~v~n 143 (373)
T 2mad_H 119 -----------------------------------------------------PRFD--VGPYSWMNANTPNNADLLFFQ 143 (373)
T ss_pred -----------------------------------------------------cccc--cCCCccceEECCCCCEEEEEe
Confidence 0000 11233588999999 777776
Q ss_pred C--CCcEEEEECCCCeeeeE-eeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec------cCCc-EEEE
Q 005646 373 I--DKTVRLWRVGNDHCLRV-FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD------IRQI-VTAV 442 (686)
Q Consensus 373 ~--Dg~V~iWd~~~~~~~~~-~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~------~~~~-V~~v 442 (686)
. +..|.++| .+++.+.. +.... |+.+.|.....+++.+.||++.++|. +++.+.... ...+ ....
T Consensus 144 ~~~~~~v~viD-~t~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~ 218 (373)
T 2mad_H 144 FAAGPAVGLVV-QGGSSDDQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQP 218 (373)
T ss_pred cCCCCeEEEEE-CCCCEEeEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecc
Confidence 4 57899999 99998888 66443 35566745567788889999999999 887663221 1112 2335
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc----cCCCCCeEEEEEeCCCCCeEEEEeC----------C
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK----KAPCKRITGFQFLPQDSSKVMVSCA----------D 508 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~I~~l~fsp~~~~~l~~~s~----------D 508 (686)
.+.+++..++..+..+.+.+.|+..........+.+.... .........+.++| +++.+.++.. .
T Consensus 219 ~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~-d~~~lyV~~~~~~~~~~~~~~ 297 (373)
T 2mad_H 219 AQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAAA 297 (373)
T ss_pred eeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC-CCCEEEEEeccCCcccccCCC
Confidence 6777766655556788999999976543322222211100 00112244478898 6666666543 3
Q ss_pred CcEEEEeCCc--------------ceeEcCCCC-EEEEEe-CCCcEEEEeCCCCC
Q 005646 509 SQVRILQGPN--------------VIGKYKDGK-HIVSAG-EDSNVYMWNCIGHE 547 (686)
Q Consensus 509 ~~I~iwd~~~--------------~~~~~~dg~-~l~sgs-~Dg~V~iWd~~~~~ 547 (686)
+.|.++|..+ .+.+++||+ +++++. .++.|.+||..+++
T Consensus 298 ~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 298 KEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 5799998653 477889999 788877 58999999999876
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.5e-11 Score=136.37 Aligned_cols=265 Identities=13% Similarity=0.104 Sum_probs=164.7
Q ss_pred eeecCCCccceeeccce---EEEEEcCCc---cccccccccCcee-cccCCceEEEEEeeCCCEEEEEeCC-----CcEE
Q 005646 208 RVRLNEEDAMFCSKVQR---VKVYHCKKR---SKELSALYKGQEI-QAHDGSILTMKFSPDGQYLASAGDD-----GVVR 275 (686)
Q Consensus 208 ~~s~~~~~l~~g~~d~~---v~vw~~~~~---~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~D-----g~I~ 275 (686)
...++|++++....++. ..+|..... ..+...+.....+ .+|...+..++|||||++||.++.+ ..|+
T Consensus 113 ~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 113 LPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp CCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence 33477887766554432 556654322 1121222111111 2355578999999999999987654 4699
Q ss_pred EEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCC
Q 005646 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (686)
Q Consensus 276 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 355 (686)
+||+.+++.+... .+..
T Consensus 193 v~dl~tg~~~~~~---------------------------------------------------------------~~~~ 209 (741)
T 1yr2_A 193 FVGVADGKPLADE---------------------------------------------------------------LKWV 209 (741)
T ss_dssp EEETTTCCEEEEE---------------------------------------------------------------EEEE
T ss_pred EEECCCCCCCCcc---------------------------------------------------------------CCCc
Confidence 9999887632110 0111
Q ss_pred CeeEEEeeCCCEEEEEECCCc--------------EEEEECCCCee--eeEee---CCCCeEEEEEeecCCCEEEEEEcC
Q 005646 356 EILDLSWSKNNYLLSASIDKT--------------VRLWRVGNDHC--LRVFP---HSNYVTCVHFNPVDDNYFISGSID 416 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~Dg~--------------V~iWd~~~~~~--~~~~~---h~~~V~~v~fsp~~~~~l~sgs~D 416 (686)
.+..++|+|+..|+.++.|+. |++|++.+++. ...+. +...+..+.|+| ++++|+..+.+
T Consensus 210 ~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~ 288 (741)
T 1yr2_A 210 KFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSE 288 (741)
T ss_dssp ESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEEC
T ss_pred eeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEc
Confidence 234678888875666665544 89999987752 22333 334689999999 99988888765
Q ss_pred C-----cEEEEecCCC--c-EEEEeccCCcEEEEEEccCCCEEEEEecC----CcEEEEeCCCCe--eeeeeeEEeeccc
Q 005646 417 G-----KVRIWAVLSC--H-VVDWVDIRQIVTAVCYRPDGQGGIVGSMM----GDCRFYNVSDNH--LELDAEICVHSKK 482 (686)
Q Consensus 417 g-----~V~iwd~~~~--~-~~~~~~~~~~V~~v~~spdg~~l~~gs~d----g~i~iwd~~~~~--~~~~~~~~~~~~~ 482 (686)
+ .|++||+.++ + ...+......+.... +|+|+.|+..+.+ +.|.+||+.+.. ... + +
T Consensus 289 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~---l-~---- 359 (741)
T 1yr2_A 289 GTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDT---V-V---- 359 (741)
T ss_dssp TTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEE---E-E----
T ss_pred cCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEE---E-e----
Confidence 4 8999999887 5 555555555555543 4899998887764 459999987642 111 1 1
Q ss_pred cCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE--eCC---------------cceeEcCCCCEEEE-E---eCCCcEEEE
Q 005646 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRIL--QGP---------------NVIGKYKDGKHIVS-A---GEDSNVYMW 541 (686)
Q Consensus 483 ~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iw--d~~---------------~~~~~~~dg~~l~s-g---s~Dg~V~iW 541 (686)
..+...+.++.+. ++.++++...|+..+|| +.. ..+.++++++.|+. . ...++|++|
T Consensus 360 ~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~ 437 (741)
T 1yr2_A 360 PESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLAL 437 (741)
T ss_dssp CCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEE
T ss_pred cCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEE
Confidence 1122346677776 45677888888877766 321 11345567775552 2 245789999
Q ss_pred eCCCCC
Q 005646 542 NCIGHE 547 (686)
Q Consensus 542 d~~~~~ 547 (686)
|+.+++
T Consensus 438 d~~tg~ 443 (741)
T 1yr2_A 438 DPATAK 443 (741)
T ss_dssp ETTTTE
T ss_pred ECCCCc
Confidence 998765
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-10 Score=132.10 Aligned_cols=235 Identities=7% Similarity=-0.060 Sum_probs=154.7
Q ss_pred eeeecCCCccceeeccc-----eEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCc--------
Q 005646 207 ERVRLNEEDAMFCSKVQ-----RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGV-------- 273 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~-----~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~-------- 273 (686)
.++++++++++.+...+ .|++|++....... . .+. ...+..++|+|||+.|+.++.++.
T Consensus 130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~--~----~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP--D----VLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE--E----EEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc--c----ccc--CcccceEEEEeCCCEEEEEEECCccccccccc
Confidence 57889999888766544 89999987643211 0 111 122678999999999999988766
Q ss_pred --------EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCC
Q 005646 274 --------VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEK 345 (686)
Q Consensus 274 --------I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (686)
|++|++.+++... .
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~----------------------------------------------------------~ 223 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSED----------------------------------------------------------I 223 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGC----------------------------------------------------------E
T ss_pred cccCCCCEEEEEECCCCcccc----------------------------------------------------------e
Confidence 8888876543100 0
Q ss_pred CeEEeccCCCCeeEEEeeCCC-EEEEEEC-----CCcEEEEECCC------Ce-eeeEee-CCCCeEEEEEeecCCCEEE
Q 005646 346 PLHEFHGHSGEILDLSWSKNN-YLLSASI-----DKTVRLWRVGN------DH-CLRVFP-HSNYVTCVHFNPVDDNYFI 411 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~~~-~L~s~s~-----Dg~V~iWd~~~------~~-~~~~~~-h~~~V~~v~fsp~~~~~l~ 411 (686)
.+.....|...+..+.|+|+| +|+.++. +..|.+||+.+ +. ....+. +...+.. .|+| +++.|+
T Consensus 224 ~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~-dg~~l~ 301 (710)
T 2xdw_A 224 LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTN-EGTVFT 301 (710)
T ss_dssp EEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEE-ETTEEE
T ss_pred EEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEec-cCCEEE
Confidence 011112355667899999999 6666554 56899999986 42 334443 6666655 4888 777776
Q ss_pred EEEcC----CcEEEEecCCCc---EEEEeccCC--cEEEEEEccCCCEEEEEecCCc--EEEEeCCCCeeeeeeeEEeec
Q 005646 412 SGSID----GKVRIWAVLSCH---VVDWVDIRQ--IVTAVCYRPDGQGGIVGSMMGD--CRFYNVSDNHLELDAEICVHS 480 (686)
Q Consensus 412 sgs~D----g~V~iwd~~~~~---~~~~~~~~~--~V~~v~~spdg~~l~~gs~dg~--i~iwd~~~~~~~~~~~~~~~~ 480 (686)
..+.. +.|.+||+.++. ...+..+.. .+..++|++++.++++...++. |++|++.+++.... +
T Consensus 302 ~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~--l---- 375 (710)
T 2xdw_A 302 FKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKI--F---- 375 (710)
T ss_dssp EEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEE--E----
T ss_pred EEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEe--c----
Confidence 66543 369999998764 244555544 6888999988888888888885 56677755543211 1
Q ss_pred cccCCCCCeEEEEEeCCCCCeEEEE-e---CCCcEEEEeCCc
Q 005646 481 KKKAPCKRITGFQFLPQDSSKVMVS-C---ADSQVRILQGPN 518 (686)
Q Consensus 481 ~~~~~~~~I~~l~fsp~~~~~l~~~-s---~D~~I~iwd~~~ 518 (686)
..+...+..+.++| ++..++.. + ..++|.+||..+
T Consensus 376 --~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 376 --PLEVGSVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp --CCCSSEEEEEECCT-TCSEEEEEEECSSCCCEEEEEETTS
T ss_pred --CCCCceEEEEecCC-CCCEEEEEEeCCCCCCEEEEEECCC
Confidence 12345688899999 55555433 3 347899999754
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.31 E-value=7.6e-10 Score=113.55 Aligned_cols=233 Identities=12% Similarity=0.131 Sum_probs=158.4
Q ss_pred cCCceEEEEEeeCCCEEEE-------EeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 249 HDGSILTMKFSPDGQYLAS-------AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Las-------gs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
.-....+++|+++|+++++ +..++.|.+||..+++... +..
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~------------------------------- 63 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICK------------------------------- 63 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EEC-------------------------------
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEe-------------------------------
Confidence 3446789999999988877 5678899999977665211 000
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC-CEEEEEECCCcEEEEECCCCeeeeE-ee-----CC
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRV-FP-----HS 394 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~-~~L~s~s~Dg~V~iWd~~~~~~~~~-~~-----h~ 394 (686)
....++...+.+++++++ +.|+.++....|.+||.. ++.... .. ..
T Consensus 64 --------------------------~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~ 116 (314)
T 1pjx_A 64 --------------------------PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRM 116 (314)
T ss_dssp --------------------------CEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBC
T ss_pred --------------------------cccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccc
Confidence 001124456889999999 766666666689999998 665443 22 12
Q ss_pred CCeEEEEEeecCCCEEEEEEcC---------------CcEEEEecCCCcEEEEeccCCcEEEEEEc----cCCCEEEEE-
Q 005646 395 NYVTCVHFNPVDDNYFISGSID---------------GKVRIWAVLSCHVVDWVDIRQIVTAVCYR----PDGQGGIVG- 454 (686)
Q Consensus 395 ~~V~~v~fsp~~~~~l~sgs~D---------------g~V~iwd~~~~~~~~~~~~~~~V~~v~~s----pdg~~l~~g- 454 (686)
..+.+++++| +++++++...+ +.|..||.. ++.............++++ |+|+.++++
T Consensus 117 ~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~ 194 (314)
T 1pjx_A 117 QGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAE 194 (314)
T ss_dssp BCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEE
T ss_pred cCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEE
Confidence 4588999999 88888877655 567778776 6555444444557889999 999766555
Q ss_pred ecCCcEEEEeCC-CCeeeeeeeEEeeccccCCC-CCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc--------------
Q 005646 455 SMMGDCRFYNVS-DNHLELDAEICVHSKKKAPC-KRITGFQFLPQDSSKVMVSCADSQVRILQGPN-------------- 518 (686)
Q Consensus 455 s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~-~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-------------- 518 (686)
..++.|.+||+. +++........ ....+. ..+.++++.+ ++.++++...++.|.+||..+
T Consensus 195 ~~~~~i~~~~~~~~g~~~~~~~~~---~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 270 (314)
T 1pjx_A 195 TPTKKLWSYDIKGPAKIENKKVWG---HIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKP 270 (314)
T ss_dssp TTTTEEEEEEEEETTEEEEEEEEE---ECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCE
T ss_pred CCCCeEEEEECCCCCccccceEEE---ECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCc
Confidence 567899999986 34332111111 111222 4578899999 677777777889999998652
Q ss_pred -ceeEcCCCCEEE-EEeCCCcEEEEeCCCC
Q 005646 519 -VIGKYKDGKHIV-SAGEDSNVYMWNCIGH 546 (686)
Q Consensus 519 -~~~~~~dg~~l~-sgs~Dg~V~iWd~~~~ 546 (686)
.+++.++|++|. +...++.|..|++...
T Consensus 271 ~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 271 SNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred eeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 255678998554 4556788999998754
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4e-09 Score=106.95 Aligned_cols=255 Identities=8% Similarity=0.043 Sum_probs=167.5
Q ss_pred eecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeee
Q 005646 209 VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEV 288 (686)
Q Consensus 209 ~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~ 288 (686)
+.+++...++...++.|.+|+.. .. +... .+..+...+.+|+++++|.++++...++.|..|+.. ++ ...+
T Consensus 22 ~d~~g~l~v~~~~~~~v~~~d~~-~~--~~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~ 92 (299)
T 2z2n_A 22 VSDKGKVWITQHKANMISCINLD-GK--ITEY----PLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI-IKEY 92 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-CC--EEEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEE
T ss_pred ECCCCCEEEEecCCCcEEEEcCC-CC--eEEe----cCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-EEEE
Confidence 34555555554457889999865 21 1111 112245679999999999988887778889998864 22 1111
Q ss_pred ccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-E
Q 005646 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-Y 367 (686)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~ 367 (686)
. +..+...+..+++.+++ +
T Consensus 93 ~------------------------------------------------------------~~~~~~~~~~i~~~~~g~l 112 (299)
T 2z2n_A 93 T------------------------------------------------------------LPNPDSAPYGITEGPNGDI 112 (299)
T ss_dssp E------------------------------------------------------------CSSTTCCEEEEEECTTSCE
T ss_pred e------------------------------------------------------------CCCcCCCceeeEECCCCCE
Confidence 0 01133467889999988 5
Q ss_pred EEEEECCCcEEEEECCCCeeeeEe-e-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe--ccCCcEEEEE
Q 005646 368 LLSASIDKTVRLWRVGNDHCLRVF-P-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAVC 443 (686)
Q Consensus 368 L~s~s~Dg~V~iWd~~~~~~~~~~-~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~V~~v~ 443 (686)
+++...++.|.+||. +++..... . +...+.++++.| +++++++...++.|..||. +++..... .....+..++
T Consensus 113 ~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~ 189 (299)
T 2z2n_A 113 WFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGIT 189 (299)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred EEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEE
Confidence 555556789999998 55443322 2 456789999998 8888887777889999999 77665432 2345688999
Q ss_pred EccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-----
Q 005646 444 YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN----- 518 (686)
Q Consensus 444 ~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~----- 518 (686)
++++|+.+++...++.|.+||. ++.... .. ...+...+.++++.+ ++.++++...++.|..||...
T Consensus 190 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~----~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~ 260 (299)
T 2z2n_A 190 KGNDDALWFVEIIGNKIGRITT-SGEITE---FK----IPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTSNNIIEEY 260 (299)
T ss_dssp ECTTSSEEEEETTTTEEEEECT-TCCEEE---EE----CSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEETTTEEEEE
T ss_pred ECCCCCEEEEccCCceEEEECC-CCcEEE---EE----CCCCCCCceeEEECC-CCCEEEeccCCceEEEECCCCceEEE
Confidence 9999997777667889999998 554321 11 112346689999999 566666655778888888532
Q ss_pred ----------ceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 519 ----------VIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 519 ----------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.+.+ ++|++.++.+ .+.|..++..++
T Consensus 261 ~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 261 PIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp ECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred eCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 1334 5666655544 455666665543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.1e-11 Score=126.10 Aligned_cols=187 Identities=9% Similarity=-0.023 Sum_probs=132.1
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCce
Q 005646 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (686)
++..+++++...+|++|+.++ +++|++........ .....
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~--~~~~~------------------------------------- 78 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHIT--SDSTP------------------------------------- 78 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHH--SSSCC-------------------------------------
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhc--ccccc-------------------------------------
Confidence 689999999999999999985 66699865431000 00000
Q ss_pred EEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCE
Q 005646 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409 (686)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~ 409 (686)
-.+.... .+.. |..|+| ++ .|+++ .++.|++||+.+........ |...|.++.+.+ . .
T Consensus 79 ------------~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~ 138 (388)
T 1xip_A 79 ------------LTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--T 138 (388)
T ss_dssp ------------CCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--E
T ss_pred ------------ccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--C
Confidence 0111112 2556 999999 66 78777 88999999998776554444 778898888766 2 3
Q ss_pred EEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc---cCCC
Q 005646 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK---KAPC 486 (686)
Q Consensus 410 l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~ 486 (686)
++++..||.|.+||+.++.... +...|++++|+|+| +++|..||++++|+...........+...... ..|.
T Consensus 139 ~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~ 213 (388)
T 1xip_A 139 LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE 213 (388)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT
T ss_pred EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCC
Confidence 8889999999999999887654 45689999999999 77899999999998877664211112111111 1356
Q ss_pred CCeEEEEEeCCCCCeEEE
Q 005646 487 KRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 487 ~~I~~l~fsp~~~~~l~~ 504 (686)
..|.++.|.+ +..++++
T Consensus 214 ~~V~sI~wl~-~~~flv~ 230 (388)
T 1xip_A 214 YSPLSVTILS-PQDFLAV 230 (388)
T ss_dssp SEEEEEEESS-SSEEEEE
T ss_pred eeEEEEEEec-CCeEEEE
Confidence 8899999999 5555544
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-09 Score=113.51 Aligned_cols=269 Identities=13% Similarity=0.098 Sum_probs=174.1
Q ss_pred ecCCCccceeec-----cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe----------CCCcE
Q 005646 210 RLNEEDAMFCSK-----VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVV 274 (686)
Q Consensus 210 s~~~~~l~~g~~-----d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I 274 (686)
.+++..+..... ++.|.+.|..+... ..++.....+ . ++++|||++|+.+. .++.|
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v-------~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeE-------EEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEE
Confidence 466666655543 57899998765432 1233334445 4 99999999888775 36789
Q ss_pred EEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC
Q 005646 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (686)
Q Consensus 275 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 354 (686)
.+||..+.+.+..+...... . . ...
T Consensus 112 sviD~~t~~v~~~I~v~~g~---------------------------------------------------r---~-~~g 136 (386)
T 3sjl_D 112 EVFDPVTLLPTADIELPDAP---------------------------------------------------R---F-LVG 136 (386)
T ss_dssp EEECTTTCCEEEEEEETTCC---------------------------------------------------C---C-CBS
T ss_pred EEEECCCCeEEEEEECCCcc---------------------------------------------------c---c-ccC
Confidence 99999998866655432100 0 0 011
Q ss_pred CCeeEEEeeCCC-EEEEEEC--CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC-CcEE
Q 005646 355 GEILDLSWSKNN-YLLSASI--DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHVV 430 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s~--Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-~~~~ 430 (686)
..-..++++|+| +|+.+.. ++.|.++|+.+++.+.++.-.+. ....|...+.|++.+.||++.+.++.+ +++.
T Consensus 137 ~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 137 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE 213 (386)
T ss_dssp CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred CCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEE
Confidence 234578999999 7777663 68999999999999999874442 233464677888999999999999976 5653
Q ss_pred EEec-c----CCcE-EEEEEc-cCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc----ccCCCCCeEEEEEeCCCC
Q 005646 431 DWVD-I----RQIV-TAVCYR-PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK----KKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 431 ~~~~-~----~~~V-~~v~~s-pdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~I~~l~fsp~~~ 499 (686)
.... + ..++ ....|. ++|++++ .+.+|+|++.|+.+........+.+... ..-....+..++++| ++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~ 291 (386)
T 3sjl_D 214 ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-AL 291 (386)
T ss_dssp EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TT
T ss_pred EeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CC
Confidence 2111 1 1222 124564 6886555 5568999999998776443333321100 000112344577788 55
Q ss_pred CeEEEEeC----------CCcEEEEeCCc--------------ceeEcCCCC-EEEEE-eCCCcEEEEeCCCCC
Q 005646 500 SKVMVSCA----------DSQVRILQGPN--------------VIGKYKDGK-HIVSA-GEDSNVYMWNCIGHE 547 (686)
Q Consensus 500 ~~l~~~s~----------D~~I~iwd~~~--------------~~~~~~dg~-~l~sg-s~Dg~V~iWd~~~~~ 547 (686)
+.+.+... .++|.++|..+ .+.+++|++ +|++. ..++.|.++|..+++
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 66655432 25788888754 377889997 66665 458999999998876
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-09 Score=107.03 Aligned_cols=221 Identities=6% Similarity=0.030 Sum_probs=156.9
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeecc
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (686)
.+...+.+|++.++|+++++...++.|.+||.. ++. ..+.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~-------------------------------------- 51 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYP-------------------------------------- 51 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEE--------------------------------------
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEec--------------------------------------
Confidence 355689999999999987776667899999876 431 1110
Q ss_pred CCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEe
Q 005646 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFN 403 (686)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fs 403 (686)
+..+...+.++++.+++ ++++...++.|..||.. ++. ..+. ....+.++++.
T Consensus 52 ----------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~ 107 (299)
T 2z2n_A 52 ----------------------LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEG 107 (299)
T ss_dssp ----------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEEC
T ss_pred ----------------------CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEEC
Confidence 01133568899999998 55555557889999986 332 2232 45679999999
Q ss_pred ecCCCEEEEEEcCCcEEEEecCCCcEEEEe--ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 404 p~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
| ++.++++...++.|.+||. +++..... .....+..++++++|+.+++...++.|..||. +++... ..
T Consensus 108 ~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~---- 177 (299)
T 2z2n_A 108 P-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE---FK---- 177 (299)
T ss_dssp T-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EE----
T ss_pred C-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---ee----
Confidence 8 8888888777889999998 66555432 23456899999999988877777889999998 554432 11
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
.......+.++++.+ ++.++++...++.|.+|+... .+++.++|+++++...++.|.+|+.
T Consensus 178 ~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 178 IPTPASGPVGITKGN-DDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp CSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCCCCCcceeEEECC-CCCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 112335688999998 567666666678888887621 2455668887776667788999987
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-10 Score=132.99 Aligned_cols=236 Identities=12% Similarity=0.033 Sum_probs=153.1
Q ss_pred eeeecCCCccc-----eeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCc--------
Q 005646 207 ERVRLNEEDAM-----FCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGV-------- 273 (686)
Q Consensus 207 ~~~s~~~~~l~-----~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~-------- 273 (686)
.+++++|++++ .|+.+..|++|++........ ..+... ....++|+|||+.|+.++.|..
T Consensus 126 ~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-----~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 126 WAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-----DVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp EEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-----CCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred EEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-----cccCcc--cccceEEecCCCEEEEEEecCCCCCccccC
Confidence 47889999888 455567899999876542100 011111 1267999999999999998876
Q ss_pred -----EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeE
Q 005646 274 -----VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLH 348 (686)
Q Consensus 274 -----I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (686)
|++|++.++.... ..+.
T Consensus 199 ~~~~~v~~~~l~t~~~~~----------------------------------------------------------~lv~ 220 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKD----------------------------------------------------------TVVH 220 (695)
T ss_dssp GGGCEEEEEETTSCGGGC----------------------------------------------------------EEEE
T ss_pred CCCCEEEEEECCCCchhc----------------------------------------------------------eEEE
Confidence 9999887654100 0111
Q ss_pred EeccCCCCeeEEEeeCCC-EEEEEECCC----cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEE---cCCcEE
Q 005646 349 EFHGHSGEILDLSWSKNN-YLLSASIDK----TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS---IDGKVR 420 (686)
Q Consensus 349 ~l~~h~~~V~~l~~s~~~-~L~s~s~Dg----~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs---~Dg~V~ 420 (686)
....|...+..+.|+|+| +|+.++.++ .|.+|+..++.......+...+....+ | ++.++++.. .++.|.
T Consensus 221 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~ 298 (695)
T 2bkl_A 221 ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVF 298 (695)
T ss_dssp CCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-E-TTEEEEEECTTCTTCEEE
T ss_pred ecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-c-CCcEEEEECCCCCCCEEE
Confidence 223456678899999999 777666555 677777666655555556666777777 5 555544444 258899
Q ss_pred EEecCCCcE---EEEecc--CCcEEEEEEccCCCEEEEEecCCcEEEEeCC-CCeeeeeeeEEeeccccCCCCCeEEEEE
Q 005646 421 IWAVLSCHV---VDWVDI--RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS-DNHLELDAEICVHSKKKAPCKRITGFQF 494 (686)
Q Consensus 421 iwd~~~~~~---~~~~~~--~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~I~~l~f 494 (686)
+||+.++.. ..+..+ ...+..++++ ++.++++...++..+||.+. +++... .+ .......+..+.+
T Consensus 299 ~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~--~l-----~~~~~~~v~~~~~ 370 (695)
T 2bkl_A 299 EVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVR--TV-----QLPGVGAASNLMG 370 (695)
T ss_dssp EEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEE--EC-----CCSSSSEECCCBS
T ss_pred EEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeE--Ee-----cCCCCeEEEEeec
Confidence 999987652 444443 4457888888 77788888889988888654 222111 01 1112355777888
Q ss_pred eCCCCCeEEEEe----CCCcEEEEeCCc
Q 005646 495 LPQDSSKVMVSC----ADSQVRILQGPN 518 (686)
Q Consensus 495 sp~~~~~l~~~s----~D~~I~iwd~~~ 518 (686)
+| ++..++... ..++|++||..+
T Consensus 371 s~-d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 371 LE-DLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp CT-TCSEEEEEEEETTEEEEEEEEETTT
T ss_pred CC-CCCEEEEEEcCCCCCCEEEEEECCC
Confidence 88 555555333 247899999764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.5e-10 Score=114.46 Aligned_cols=182 Identities=12% Similarity=0.067 Sum_probs=135.5
Q ss_pred CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccc
Q 005646 261 DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVF 340 (686)
Q Consensus 261 dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (686)
.+++|++++.|+.|.+||.++++.+..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--------------------------------------------------- 32 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP--------------------------------------------------- 32 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE---------------------------------------------------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC---------------------------------------------------
Confidence 46789999999999999998988544332
Q ss_pred cccCCCeEEeccCC-CCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeC--CCCeEEEEEeecCCCEEEEEEc-
Q 005646 341 RILEKPLHEFHGHS-GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPH--SNYVTCVHFNPVDDNYFISGSI- 415 (686)
Q Consensus 341 ~~~~~~~~~l~~h~-~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h--~~~V~~v~fsp~~~~~l~sgs~- 415 (686)
.+. ..+.++.++|+| +|+ +.++.|..||. +++.+..+.. ...+.++++.| +++++++.+.
T Consensus 33 -----------~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~ 97 (276)
T 3no2_A 33 -----------LEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILP-DGNALVAWCGH 97 (276)
T ss_dssp -----------CCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECT-TSCEEEEEEST
T ss_pred -----------CCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECC-CCCEEEEecCC
Confidence 222 357788999999 555 56889999999 8999988883 35789999999 9999999887
Q ss_pred CCcEEEEecCCCcEEEEecc-------CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCC
Q 005646 416 DGKVRIWAVLSCHVVDWVDI-------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (686)
Q Consensus 416 Dg~V~iwd~~~~~~~~~~~~-------~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 488 (686)
++.|..+|. +++.+..... ......+++.++|+++++...++.|..||.. ++....... ...
T Consensus 98 ~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~---------~~~ 166 (276)
T 3no2_A 98 PSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL---------SGT 166 (276)
T ss_dssp TEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC---------SSC
T ss_pred CCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC---------CCC
Confidence 788888886 6665533321 1234567789999999999999999999998 765543211 023
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 489 I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.++.+.+ +|++|++++.++.|..+|..+++
T Consensus 167 ~~~~~~~~----------------------------~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 167 PFSSAFLD----------------------------NGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp CCEEEECT----------------------------TSCEEEECBTTSEEEEECTTTCC
T ss_pred ccceeEcC----------------------------CCCEEEEeCCCCeEEEEeCcCCc
Confidence 44566666 67777777777777777777665
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.3e-10 Score=119.18 Aligned_cols=175 Identities=8% Similarity=-0.027 Sum_probs=126.8
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCcccccc---ccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeec
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELS---ALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE 281 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~---~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~ 281 (686)
...+++.....+++|+.+ .++||+.+...+... .-........+.. |+.|+| |+++|+++ .++.|++||+.+
T Consensus 41 nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~s 115 (388)
T 1xip_A 41 QNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEE 115 (388)
T ss_dssp BCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSS
T ss_pred cEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchh
Confidence 445666777777777776 566698654321000 0011122334677 999999 89999999 889999999876
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
.... .....|...|.++.
T Consensus 116 l~~~--------------------------------------------------------------~~~~~~~~~v~~i~ 133 (388)
T 1xip_A 116 LSEF--------------------------------------------------------------RTVTSFEKPVFQLK 133 (388)
T ss_dssp TTCE--------------------------------------------------------------EEEEECSSCEEEEE
T ss_pred hhcc--------------------------------------------------------------CccceeecceeeEE
Confidence 5411 11223455667777
Q ss_pred eeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE--EEEe------
Q 005646 362 WSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--VDWV------ 433 (686)
Q Consensus 362 ~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~--~~~~------ 433 (686)
+.+.. +++++.||.|.+||+.+++... +...|+|++|+| ++ ++.|..||++++|+....++ ...+
T Consensus 134 ~~~p~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~ 206 (388)
T 1xip_A 134 NVNNT-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSEL 206 (388)
T ss_dssp ECSSE-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHH
T ss_pred ecCCC-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCCccc
Confidence 66553 8889999999999999887653 456899999999 77 78899999999999988875 4333
Q ss_pred ----ccCCcEEEEEEccCCCEEEE
Q 005646 434 ----DIRQIVTAVCYRPDGQGGIV 453 (686)
Q Consensus 434 ----~~~~~V~~v~~spdg~~l~~ 453 (686)
++...|.+|+|.++++++++
T Consensus 207 ~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 207 EELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp HTSCTTTSEEEEEEESSSSEEEEE
T ss_pred ccccCCCeeEEEEEEecCCeEEEE
Confidence 25778999999999988876
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-09 Score=120.90 Aligned_cols=183 Identities=9% Similarity=0.041 Sum_probs=142.9
Q ss_pred CCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC--CCcEEEEeccCCcEE
Q 005646 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL--SCHVVDWVDIRQIVT 440 (686)
Q Consensus 364 ~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~--~~~~~~~~~~~~~V~ 440 (686)
+.+ .+++...+++|.++|..+++.+..+.....+..+.|+| +++++++++.|+.|.+||+. +.+++..+.......
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~ 243 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 243 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc
Confidence 444 66777789999999999999999998777788999999 99999999999999999996 777776666666678
Q ss_pred EEEEc----cCCCEEEEEec-CCcEEEEeCCCCeeeeeeeEEeeccc--c-CCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 441 AVCYR----PDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKK--K-APCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 441 ~v~~s----pdg~~l~~gs~-dg~i~iwd~~~~~~~~~~~~~~~~~~--~-~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
.++|+ |||+++++++. ++++.++|..+.+............. . ....++..+.++++.+..++....+|.|.
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~ 323 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 323 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence 99999 69999888765 58999999988776543221111000 0 11236888999986666666667789999
Q ss_pred EEeCCc----------------ceeEcCCCCEEEEEe-CCCcEEEEeCCCCC
Q 005646 513 ILQGPN----------------VIGKYKDGKHIVSAG-EDSNVYMWNCIGHE 547 (686)
Q Consensus 513 iwd~~~----------------~~~~~~dg~~l~sgs-~Dg~V~iWd~~~~~ 547 (686)
++|..+ ...|+|+|++|+++. .++.|.++|+.+++
T Consensus 324 ~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 324 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred EEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 998653 256899999988766 57899999999876
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.19 E-value=3e-08 Score=100.49 Aligned_cols=228 Identities=8% Similarity=0.065 Sum_probs=152.5
Q ss_pred eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeee
Q 005646 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTE 287 (686)
Q Consensus 208 ~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~ 287 (686)
.+..++...++...++.|.+++.. .. +... .+..+...+.+|++.++|++.++...++.|..||.. ++. ..
T Consensus 26 ~~d~~g~l~v~~~~~~~v~~~~~~-~~--~~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~ 96 (300)
T 2qc5_A 26 TSSEDGKVWFTQHKANKISSLDQS-GR--IKEF----EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TE 96 (300)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SC--EEEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EE
T ss_pred eECCCCCEEEEcCCCCeEEEECCC-Cc--eEEE----ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EE
Confidence 344555555555567889999865 21 1111 122345679999999999887777667889998876 431 11
Q ss_pred eccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-
Q 005646 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN- 366 (686)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~- 366 (686)
+. +......+.++++.+++
T Consensus 97 ~~------------------------------------------------------------~~~~~~~~~~i~~~~~g~ 116 (300)
T 2qc5_A 97 YP------------------------------------------------------------LPQPDSGPYGITEGLNGD 116 (300)
T ss_dssp EE------------------------------------------------------------CSSTTCCEEEEEECSTTC
T ss_pred ec------------------------------------------------------------CCCCCCCCccceECCCCC
Confidence 10 01122457889999888
Q ss_pred EEEEEECCCcEEEEECCCCeeeeE-ee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe--ccCCcEEEE
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRV-FP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAV 442 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~-~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~V~~v 442 (686)
++++...++.|..+|.. ++.... +. ....+.++++.| +++++++...++.|..||. +++..... .....+..+
T Consensus 117 l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i 193 (300)
T 2qc5_A 117 IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGI 193 (300)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceE
Confidence 55555557899999987 554422 22 456789999999 8887777666889999998 66655432 223468899
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
+++++|+.+++....+.|.+||. ++..... . ...+...+.++++.+ ++.+.++...++.|..++.
T Consensus 194 ~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~---~----~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 194 TSGNDGALWFVEIMGNKIGRITT-TGEISEY---D----IPTPNARPHAITAGK-NSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EECTTSSEEEEETTTTEEEEECT-TCCEEEE---E----CSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECT
T ss_pred EECCCCCEEEEccCCCEEEEEcC-CCcEEEE---E----CCCCCCCceEEEECC-CCCEEEeccCCCeEEEECC
Confidence 99999987777666778999998 3332211 1 112345688999999 5666666666788888875
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.16 E-value=8.4e-09 Score=105.64 Aligned_cols=238 Identities=9% Similarity=0.072 Sum_probs=150.2
Q ss_pred ceeeecCCCccce-------eeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEE
Q 005646 206 GERVRLNEEDAMF-------CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLW 277 (686)
Q Consensus 206 ~~~~s~~~~~l~~-------g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vW 277 (686)
...+..++..+++ +..++.|.+|+....... ... .....++...+.+++++++ |+++++.. .+.|.+|
T Consensus 22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~-~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~ 97 (314)
T 1pjx_A 22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT--VIC-KPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVV 97 (314)
T ss_dssp EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE--EEE-CCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEE
T ss_pred CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE--EEE-ecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEE
Confidence 4455556665566 577889999986543221 111 0111235577999999999 76555444 4478889
Q ss_pred EeecCeeeee-eccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 278 QVVEDERLTE-VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 278 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
|.. ++.... .... . ..+...
T Consensus 98 d~~-g~~~~~~~~~~------------------------------------------------------~----~~~~~~ 118 (314)
T 1pjx_A 98 QTD-GTFEEIAKKDS------------------------------------------------------E----GRRMQG 118 (314)
T ss_dssp ETT-SCEEECCSBCT------------------------------------------------------T----SCBCBC
T ss_pred eCC-CCEEEEEeccC------------------------------------------------------C----CccccC
Confidence 876 542111 0000 0 012245
Q ss_pred eeEEEeeCCC-EEEEEECC---------------CcEEEEECCCCeeeeEeeCCCCeEEEEEe----ecCCCEEEEE-Ec
Q 005646 357 ILDLSWSKNN-YLLSASID---------------KTVRLWRVGNDHCLRVFPHSNYVTCVHFN----PVDDNYFISG-SI 415 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~D---------------g~V~iWd~~~~~~~~~~~h~~~V~~v~fs----p~~~~~l~sg-s~ 415 (686)
+.++++.++| ++++...+ +.|..||.. ++......+......++|+ | +++.++.+ ..
T Consensus 119 ~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~ 196 (314)
T 1pjx_A 119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDG-RPYQLIVAETP 196 (314)
T ss_dssp CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTS-CEEEEEEEETT
T ss_pred CcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCC-CCCEEEEEECC
Confidence 7889999998 44444433 467777765 5554444455667899999 9 77655444 56
Q ss_pred CCcEEEEecC-CCcEE---EEe---ccC-CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCC
Q 005646 416 DGKVRIWAVL-SCHVV---DWV---DIR-QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (686)
Q Consensus 416 Dg~V~iwd~~-~~~~~---~~~---~~~-~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 487 (686)
++.|.+||+. +++.. .+. .+. ..+..++++++|+++++...++.|.+||..+++.... +. .+..
T Consensus 197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~--~~------~~~~ 268 (314)
T 1pjx_A 197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMR--IR------CPFE 268 (314)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEE--EE------CSSS
T ss_pred CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEE--Ee------CCCC
Confidence 7899999986 44421 111 122 5678999999999888877889999999875543321 11 1235
Q ss_pred CeEEEEEeCCCCC-eEEEEeCCCcEEEEeCC
Q 005646 488 RITGFQFLPQDSS-KVMVSCADSQVRILQGP 517 (686)
Q Consensus 488 ~I~~l~fsp~~~~-~l~~~s~D~~I~iwd~~ 517 (686)
.+.+++|+| ++. ++++...++.|..|+..
T Consensus 269 ~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 269 KPSNLHFKP-QTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CEEEEEECT-TSSEEEEEETTTTEEEEEECS
T ss_pred CceeEEECC-CCCEEEEEeCCCCeEEEEeCC
Confidence 689999988 666 44555567889998865
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.2e-09 Score=112.86 Aligned_cols=196 Identities=13% Similarity=0.040 Sum_probs=134.4
Q ss_pred CceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCc
Q 005646 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (686)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (686)
.....|+|+++|+++++...++.|++||..++......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~------------------------------------------ 168 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH------------------------------------------ 168 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE------------------------------------------
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee------------------------------------------
Confidence 46889999999998888777899999998776532111
Q ss_pred eEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCC--cEEEEECCCCeeeeEe----e-CCCCeEEEEE
Q 005646 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDK--TVRLWRVGNDHCLRVF----P-HSNYVTCVHF 402 (686)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg--~V~iWd~~~~~~~~~~----~-h~~~V~~v~f 402 (686)
. ...... ++|++++ .|+.+..++ .|.+|+...+.....+ . ....+.++++
T Consensus 169 --------------------~-~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav 226 (409)
T 3hrp_A 169 --------------------P-GFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVAL 226 (409)
T ss_dssp --------------------E-TCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEE
T ss_pred --------------------c-cCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEE
Confidence 0 111223 8899998 888888766 7899988766554444 3 4567889999
Q ss_pred eecCCCEEEEEEcCCcEEEEecCCCcEEEE----e-ccCCcE-E-EEEEccC-CCEEEEEecCCcEEEEeCCCCeeeeee
Q 005646 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDW----V-DIRQIV-T-AVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDA 474 (686)
Q Consensus 403 sp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~----~-~~~~~V-~-~v~~spd-g~~l~~gs~dg~i~iwd~~~~~~~~~~ 474 (686)
+| ++..|+.+..++.|+.||..++....+ . .....- . .++|+|+ +.++++-..++.|+.|+........
T Consensus 227 ~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~-- 303 (409)
T 3hrp_A 227 DE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWF-- 303 (409)
T ss_dssp CT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEE--
T ss_pred eC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEE--
Confidence 99 555666677789999999988765433 1 111111 2 8999995 6566666678899999987542111
Q ss_pred eEEeec---------cccCCCCCeEEEEEeCCCCCeEEEEe-CCCcEEEEeC
Q 005646 475 EICVHS---------KKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQG 516 (686)
Q Consensus 475 ~~~~~~---------~~~~~~~~I~~l~fsp~~~~~l~~~s-~D~~I~iwd~ 516 (686)
.... ..........+++++| ++.++++-. .+++|+.|+.
T Consensus 304 --~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~ 352 (409)
T 3hrp_A 304 --CGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDI 352 (409)
T ss_dssp --EECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEET
T ss_pred --EeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEEC
Confidence 1100 0011134588999999 677777777 8899999983
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.16 E-value=4e-09 Score=112.42 Aligned_cols=257 Identities=11% Similarity=0.097 Sum_probs=171.4
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe----------CCCcEEEEEeecCeeeeeeccCC
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDIPE 292 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~vWd~~~~~~~~~~~~~~ 292 (686)
+.|.+.|..+... ..++..-..+ .+.++|||++|+.+. .++.|.++|..+.+.+..+....
T Consensus 99 ~~VsVID~~t~~v-------v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g 169 (426)
T 3c75_H 99 TQQFVIDGSTGRI-------LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD 169 (426)
T ss_dssp EEEEEEETTTTEE-------EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred CeEEEEECCCCEE-------EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC
Confidence 7899998765432 1223333445 899999999888876 36789999999988666554320
Q ss_pred CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEE
Q 005646 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA 371 (686)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~ 371 (686)
.. .+ ........+.++|+| +|+.+
T Consensus 170 ~~------------------------------------------------------r~-~~g~~P~~~~~spDGk~lyV~ 194 (426)
T 3c75_H 170 AP------------------------------------------------------RF-LVGTYQWMNALTPDNKNLLFY 194 (426)
T ss_dssp CC------------------------------------------------------CC-CBSCCGGGSEECTTSSEEEEE
T ss_pred cc------------------------------------------------------cc-ccCCCcceEEEcCCCCEEEEE
Confidence 00 00 011233578899999 77777
Q ss_pred EC--CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE----ecc-CCc-EEEEE
Q 005646 372 SI--DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW----VDI-RQI-VTAVC 443 (686)
Q Consensus 372 s~--Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~----~~~-~~~-V~~v~ 443 (686)
.. +++|.+.|+.+++.+..+.-.+. ....|.....+++.+.||++.+.+..++++... +.. ..+ ...+.
T Consensus 195 n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~ 271 (426)
T 3c75_H 195 QFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPA 271 (426)
T ss_dssp ECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCE
T ss_pred ecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEee
Confidence 64 57899999999999988874332 345563457788888999999999976665522 111 111 12357
Q ss_pred EccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc-cC---CCCCeEEEEEeCCCCCeEEEEeC----------CC
Q 005646 444 YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK-KA---PCKRITGFQFLPQDSSKVMVSCA----------DS 509 (686)
Q Consensus 444 ~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~---~~~~I~~l~fsp~~~~~l~~~s~----------D~ 509 (686)
|.+++..++..+..+.+.+.|+..........+.+.... .. .......+.++| ++..++++.. ++
T Consensus 272 ~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rlyVa~~~~~~gthk~~s~ 350 (426)
T 3c75_H 272 FSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRIYLLVDQRDEWKHKAASR 350 (426)
T ss_dssp ECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEEEEEEEECCTTCTTSCEE
T ss_pred ecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEEEEEecccccccccCCCC
Confidence 899999888888899999999976654332222211000 00 001122378999 5565555432 35
Q ss_pred cEEEEeCCc--------------ceeEcCCCC-EEEEEe-CCCcEEEEeCCCCC
Q 005646 510 QVRILQGPN--------------VIGKYKDGK-HIVSAG-EDSNVYMWNCIGHE 547 (686)
Q Consensus 510 ~I~iwd~~~--------------~~~~~~dg~-~l~sgs-~Dg~V~iWd~~~~~ 547 (686)
.|.++|..+ .+.+++||+ +|++.. .++.|.|+|..+.+
T Consensus 351 ~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 351 FVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 799999754 367889999 888888 59999999999876
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.14 E-value=5.3e-09 Score=104.65 Aligned_cols=196 Identities=11% Similarity=-0.019 Sum_probs=133.2
Q ss_pred ceEEEEEeeCCCEEE-EEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCc
Q 005646 252 SILTMKFSPDGQYLA-SAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (686)
Q Consensus 252 ~I~~l~fspdg~~La-sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (686)
...+|+++++|++++ +.+.++.|.+|+..+..... +
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~------------------------------------------ 61 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-L------------------------------------------ 61 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-C------------------------------------------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-E------------------------------------------
Confidence 678999999999777 44678899999865432100 0
Q ss_pred eEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEe-eCCCCeEEEEEeecCCCE
Q 005646 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNY 409 (686)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~-~h~~~V~~v~fsp~~~~~ 409 (686)
...+...+.++++.+++.|+.+..++.|.+||.......... .....+.+++++| ++++
T Consensus 62 -------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l 121 (270)
T 1rwi_B 62 -------------------PFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAV 121 (270)
T ss_dssp -------------------CCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECT-TCCE
T ss_pred -------------------eeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECC-CCCE
Confidence 011234567899999884444444889999998765443222 2336789999999 8888
Q ss_pred EEEEEcCCcEEEEecCCCcEEEEe-ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCC
Q 005646 410 FISGSIDGKVRIWAVLSCHVVDWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (686)
Q Consensus 410 l~sgs~Dg~V~iwd~~~~~~~~~~-~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 488 (686)
+++...++.|.+|+..+....... .....+..++++|+|+.+++...++.|.+||..+...... ...+...
T Consensus 122 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~ 193 (270)
T 1rwi_B 122 YVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--------PFTDITA 193 (270)
T ss_dssp EEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--------CCSSCCS
T ss_pred EEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee--------cccCCCC
Confidence 888778899999987665443222 2224578899999999777777788999999876543221 1112245
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 489 I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
+.++++.+ +|.++++...++.|++|+..+.
T Consensus 194 p~~i~~d~----------------------------~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 194 PWGIAVDE----------------------------AGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp EEEEEECT----------------------------TCCEEEEETTTSCEEEECTTCS
T ss_pred ceEEEECC----------------------------CCCEEEEECCCCcEEEEcCCCC
Confidence 77888887 6766666667778888887653
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-08 Score=105.13 Aligned_cols=218 Identities=10% Similarity=-0.014 Sum_probs=143.4
Q ss_pred ecccCCceEEEEEeeCCC-EEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEe
Q 005646 246 IQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (686)
Q Consensus 246 l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (686)
+..+........|+|+|+ ++++...++.|..|+. +++.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~---------------------------------------- 78 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV---------------------------------------- 78 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE----------------------------------------
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE----------------------------------------
Confidence 444556678899999998 6677777889999986 3331
Q ss_pred eccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEE-CCCcEEEEECCCCeeeeEee-----CCCCeE
Q 005646 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSAS-IDKTVRLWRVGNDHCLRVFP-----HSNYVT 398 (686)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s-~Dg~V~iWd~~~~~~~~~~~-----h~~~V~ 398 (686)
..+..+...+..++++++|.|+.+. .++.|.+|+.. ++...... ....++
T Consensus 79 -----------------------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~ 134 (305)
T 3dr2_A 79 -----------------------DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPN 134 (305)
T ss_dssp -----------------------EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCC
T ss_pred -----------------------EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCC
Confidence 1122244567899999999555554 45789999986 54332222 124577
Q ss_pred EEEEeecCCCEEEE----EEc-------------CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecC----
Q 005646 399 CVHFNPVDDNYFIS----GSI-------------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM---- 457 (686)
Q Consensus 399 ~v~fsp~~~~~l~s----gs~-------------Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~d---- 457 (686)
.+++.| +++++++ |.. .+.|..||..+++..... .......++|+|||+.|+++...
T Consensus 135 ~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~ 212 (305)
T 3dr2_A 135 DLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGH 212 (305)
T ss_dssp CEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---
T ss_pred CEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCC
Confidence 899999 8998886 332 256888888777665444 44557889999999988877665
Q ss_pred --CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC-------------cceeE
Q 005646 458 --GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-------------NVIGK 522 (686)
Q Consensus 458 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~-------------~~~~~ 522 (686)
+.|++|++....+.. ..... . .......++.+.+ ++. |.++..+ .|.+|+.. ..++|
T Consensus 213 ~~~~i~~~~~~~~~l~~-~~~~~-~---~~~~~pdgi~~d~-~G~-lwv~~~~-gv~~~~~~g~~~~~~~~~~~~~~~~f 284 (305)
T 3dr2_A 213 GSVEITAFAWRDGALHD-RRHFA-S---VPDGLPDGFCVDR-GGW-LWSSSGT-GVCVFDSDGQLLGHIPTPGTASNCTF 284 (305)
T ss_dssp CCCEEEEEEEETTEEEE-EEEEE-C---CSSSCCCSEEECT-TSC-EEECCSS-EEEEECTTSCEEEEEECSSCCCEEEE
T ss_pred CCCEEEEEEecCCCccC-CeEEE-E---CCCCCCCeEEECC-CCC-EEEecCC-cEEEECCCCCEEEEEECCCceeEEEE
Confidence 789999987655211 11111 1 1123456788888 556 4444444 48888743 23567
Q ss_pred cCCCCEEEEEeCCCcE
Q 005646 523 YKDGKHIVSAGEDSNV 538 (686)
Q Consensus 523 ~~dg~~l~sgs~Dg~V 538 (686)
.++++.|..++.++..
T Consensus 285 ~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 285 DQAQQRLFITGGPCLW 300 (305)
T ss_dssp CTTSCEEEEEETTEEE
T ss_pred eCCCCEEEEEcCCeEE
Confidence 7788888877776433
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.11 E-value=7.7e-08 Score=97.41 Aligned_cols=220 Identities=7% Similarity=-0.010 Sum_probs=154.7
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
....+.+|++.++|++.++...++.|.+||.. ++.. .+.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~--------------------------------------- 56 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFE--------------------------------------- 56 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEE---------------------------------------
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEE---------------------------------------
Confidence 45678999999999988877778899999876 4311 110
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEee
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNP 404 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp 404 (686)
+..+...+..+++.+++ ++++...++.|..||.. ++.. .+. ....+.++++.|
T Consensus 57 ---------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~ 113 (300)
T 2qc5_A 57 ---------------------VPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGL 113 (300)
T ss_dssp ---------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECS
T ss_pred ---------------------CCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECC
Confidence 11233567889999988 55555557889999988 5543 232 346799999998
Q ss_pred cCCCEEEEEEcCCcEEEEecCCCcEEEEe--ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc
Q 005646 405 VDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482 (686)
Q Consensus 405 ~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 482 (686)
+++++++...++.|..||.. ++..... .....+..+++.++|+.+++...++.|..||. +++... +. .
T Consensus 114 -~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~----~ 183 (300)
T 2qc5_A 114 -NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE---YP----L 183 (300)
T ss_dssp -TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EE----C
T ss_pred -CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE---ee----C
Confidence 88888887778899999987 6655332 23456899999999997766666789999998 444321 11 1
Q ss_pred cCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 483 ~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
..+...+.++.+.+ ++.++++....+.|.+++... .+++.++|++.++...++.|..|+.
T Consensus 184 ~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 184 PTNAAAPVGITSGN-DGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp SSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCCCCCcceEEECC-CCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 12335688999998 667666666677888887531 2455667776666666788888887
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-08 Score=108.76 Aligned_cols=238 Identities=13% Similarity=0.061 Sum_probs=144.3
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCC--cEEEEEeecCee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG--VVRLWQVVEDER 284 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--~I~vWd~~~~~~ 284 (686)
..+.++++.+++...++.|++|+...... ..+ +.. ..... ++|++++++|+.+..++ .|.+|+..++..
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~--~~~-----~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKV--TTV-----HPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEE--EEE-----EET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEE--EEe-----ecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 34555666566666678999998764322 111 111 12233 99999999999988866 677777654431
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc-CCCCeeEEEee
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG-HSGEILDLSWS 363 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~s 363 (686)
...+ ..+.. +...+.+++++
T Consensus 207 ~~~~-----------------------------------------------------------g~~~~~~~~~p~~iav~ 227 (409)
T 3hrp_A 207 PTRI-----------------------------------------------------------GQLGSTFSGKIGAVALD 227 (409)
T ss_dssp EEEE-----------------------------------------------------------EECCTTSCSCCCBCEEC
T ss_pred eEEe-----------------------------------------------------------eeccchhcCCcEEEEEe
Confidence 1111 00011 33456789999
Q ss_pred C-CCEEEEEECCCcEEEEECCCCeeeeE----ee-CCCCe--EEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc
Q 005646 364 K-NNYLLSASIDKTVRLWRVGNDHCLRV----FP-HSNYV--TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (686)
Q Consensus 364 ~-~~~L~s~s~Dg~V~iWd~~~~~~~~~----~~-h~~~V--~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~ 435 (686)
| ++.|+.+..++.|+.||..++..... .. +...- ..++|+|.++.++++-..++.|+.|+.... ...+.+.
T Consensus 228 p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~ 306 (409)
T 3hrp_A 228 ETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGS 306 (409)
T ss_dssp TTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEEC
T ss_pred CCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeC
Confidence 9 56666677788999999987764332 11 22222 399999944666666667889999997654 3333333
Q ss_pred C---------------CcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCeeeeeeeEE-eec-----cccCCCCCeEEEE
Q 005646 436 R---------------QIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEIC-VHS-----KKKAPCKRITGFQ 493 (686)
Q Consensus 436 ~---------------~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~-~~~-----~~~~~~~~I~~l~ 493 (686)
. .....++++|+|+++++-. .++.|+.|++.++.+....... ... ..........+++
T Consensus 307 ~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~gia 386 (409)
T 3hrp_A 307 ATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDIC 386 (409)
T ss_dssp TTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEE
T ss_pred CCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEE
Confidence 2 3478999999999777777 7899999998777643211000 000 0011124577788
Q ss_pred EeCCCCCeEEEEeCCCcEEEE
Q 005646 494 FLPQDSSKVMVSCADSQVRIL 514 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iw 514 (686)
+.+ ++.++++-..+++|+.+
T Consensus 387 vd~-~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 387 YDG-EGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp ECS-SSEEEEEESTTCEEEEE
T ss_pred EcC-CCCEEEEECCCCeEEEE
Confidence 887 34444444444555444
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.05 E-value=4e-08 Score=102.90 Aligned_cols=181 Identities=8% Similarity=-0.004 Sum_probs=121.7
Q ss_pred EEEeeCCC-EEEEEE----------CCCcEEEEECCCCeeeeEeeCC--------CCeEEEEEeecCCCEEEEEEc--CC
Q 005646 359 DLSWSKNN-YLLSAS----------IDKTVRLWRVGNDHCLRVFPHS--------NYVTCVHFNPVDDNYFISGSI--DG 417 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s----------~Dg~V~iWd~~~~~~~~~~~h~--------~~V~~v~fsp~~~~~l~sgs~--Dg 417 (686)
.++++|++ +|+.+. .+++|.+||..+.+.+..+.-. .....++|+| ++++++++.. ++
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~ 160 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAP 160 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSC
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCC
Confidence 39999999 565554 3678999999999998887521 2567799999 9999888874 68
Q ss_pred cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC-CeeeeeeeEEeeccccCCCCCeE-EEEEe
Q 005646 418 KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRIT-GFQFL 495 (686)
Q Consensus 418 ~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~I~-~l~fs 495 (686)
.|.++|+.+++++..+...+. ...+....+.+++.+.||++.+.++.. ++..... .........++. ...|.
T Consensus 161 ~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~----~~~~~~~~~~~~~~~~~~ 234 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH----TEVFHPEDEFLINHPAYS 234 (386)
T ss_dssp EEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE----CCCCSCTTSCBCSCCEEE
T ss_pred eEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee----cceeccccccccccceeE
Confidence 999999999999877766543 233433556777888899999999876 5542111 011111111221 23565
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCc---------------------------ceeEcCCCCEEEEEeC----------CCcE
Q 005646 496 PQDSSKVMVSCADSQVRILQGPN---------------------------VIGKYKDGKHIVSAGE----------DSNV 538 (686)
Q Consensus 496 p~~~~~l~~~s~D~~I~iwd~~~---------------------------~~~~~~dg~~l~sgs~----------Dg~V 538 (686)
+.++.++ ..+.+++|.+.|..+ .++++++++.|+.... .+.|
T Consensus 235 ~~dG~~~-~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V 313 (386)
T 3sjl_D 235 QKAGRLV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV 313 (386)
T ss_dssp TTTTEEE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred cCCCcEE-EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEE
Confidence 4355444 455678888888632 1445567787777643 2568
Q ss_pred EEEeCCCCC
Q 005646 539 YMWNCIGHE 547 (686)
Q Consensus 539 ~iWd~~~~~ 547 (686)
.+.|+.+.+
T Consensus 314 ~viD~~t~k 322 (386)
T 3sjl_D 314 VVLDAKTGE 322 (386)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCe
Confidence 888988876
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-08 Score=118.38 Aligned_cols=234 Identities=11% Similarity=-0.020 Sum_probs=145.9
Q ss_pred eeeecCCCccceeecc-----ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCc--------
Q 005646 207 ERVRLNEEDAMFCSKV-----QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGV-------- 273 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d-----~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~-------- 273 (686)
.++++++++++.+..+ ..|++|++...... . ...+...+..++|+|| +.|+.++.|+.
T Consensus 168 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~--~------~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 168 WAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL--A------DELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE--E------EEEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC--C------ccCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 5778899988877654 57999998765321 0 1112222357899999 99999887664
Q ss_pred ------EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCe
Q 005646 274 ------VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPL 347 (686)
Q Consensus 274 ------I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (686)
|++|++.++.... ..+
T Consensus 239 ~~~~~~v~~~~lgt~~~~~----------------------------------------------------------~lv 260 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSAD----------------------------------------------------------QPV 260 (741)
T ss_dssp CCCCCEEEEEETTSCGGGC----------------------------------------------------------EEE
T ss_pred CCCCCEEEEEECCCCchhC----------------------------------------------------------EEE
Confidence 5666654432100 001
Q ss_pred EEeccCCCCeeEEEeeCCC-EEEEEECCC-----cEEEEECCCC--e-eeeEeeCCCCeEEEEEeecCCCEEEEEEcC--
Q 005646 348 HEFHGHSGEILDLSWSKNN-YLLSASIDK-----TVRLWRVGND--H-CLRVFPHSNYVTCVHFNPVDDNYFISGSID-- 416 (686)
Q Consensus 348 ~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg-----~V~iWd~~~~--~-~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D-- 416 (686)
.....|...+..+.|+|+| +|+..+.++ .|.+||+.++ + ......+...+.... .| +++.|+..+.+
T Consensus 261 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~-dg~~l~~~s~~~~ 338 (741)
T 1yr2_A 261 FATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG-VGDQLWFVSGDGA 338 (741)
T ss_dssp ECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE-ETTEEEEEECTTC
T ss_pred eccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec-cCCEEEEEECCCC
Confidence 1112344458899999999 777666443 8999999887 4 333333555555554 47 78888777753
Q ss_pred --CcEEEEecCCC--cEEEEecc-CCcEEEEEEccCCCEEEEEecCCcEEEEeCC-CCeeeeeeeEEeeccccCCCCCeE
Q 005646 417 --GKVRIWAVLSC--HVVDWVDI-RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS-DNHLELDAEICVHSKKKAPCKRIT 490 (686)
Q Consensus 417 --g~V~iwd~~~~--~~~~~~~~-~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~I~ 490 (686)
+.|.+||+.++ ....+..+ ...+..++++ ++.++++...++..+||.+. ++.... .+ .......+.
T Consensus 339 ~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~--~l-----~~~~~~~v~ 410 (741)
T 1yr2_A 339 PLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG--AV-----SLPGIGSAS 410 (741)
T ss_dssp TTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE--EC-----BCSSSCEEE
T ss_pred CCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee--ec-----cCCCCeEEE
Confidence 45999999874 34444443 3456677777 56677888888887777554 222211 01 111235688
Q ss_pred EEEEeCCCCCeEE-EEe---CCCcEEEEeCCc
Q 005646 491 GFQFLPQDSSKVM-VSC---ADSQVRILQGPN 518 (686)
Q Consensus 491 ~l~fsp~~~~~l~-~~s---~D~~I~iwd~~~ 518 (686)
.+.++| ++..++ +.+ ..++|++||..+
T Consensus 411 ~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 411 GLSGRP-GDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp EEECCB-TCSCEEEEEEETTEEEEEEEEETTT
T ss_pred EeecCC-CCCEEEEEEcCCCCCCEEEEEECCC
Confidence 899999 455444 333 347899999764
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.7e-07 Score=97.41 Aligned_cols=148 Identities=7% Similarity=-0.064 Sum_probs=97.7
Q ss_pred EEEeeCCC-EEEEEE----------CCCcEEEEECCCCeeeeEeeCC--------CCeEEEEEeecCCCEEEEEEc--CC
Q 005646 359 DLSWSKNN-YLLSAS----------IDKTVRLWRVGNDHCLRVFPHS--------NYVTCVHFNPVDDNYFISGSI--DG 417 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s----------~Dg~V~iWd~~~~~~~~~~~h~--------~~V~~v~fsp~~~~~l~sgs~--Dg 417 (686)
.++++|++ +|+.+. .++.|.+||..+.+.+..+.-. .....++|+| ++++|++++. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 89999999 666664 3678999999998887776522 3456899999 9999998874 47
Q ss_pred cEEEEecCCCcEEEE-eccCCcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCC-eEEEEE
Q 005646 418 KVRIWAVLSCHVVDW-VDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR-ITGFQF 494 (686)
Q Consensus 418 ~V~iwd~~~~~~~~~-~~~~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-I~~l~f 494 (686)
.|.++| .+++++.. ...... +.+.|++ +.+++.+.||.+.++|. +++...... ..... ....+ .....+
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~--~~~~~-~~~~p~~~~~~~ 220 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL--VGAML-TAAQNLLTQPAQ 220 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe--ccccc-cCCcceeeccee
Confidence 899999 99998876 665543 4455655 45566778999999999 766542111 00000 01111 123456
Q ss_pred eCCCCCeEEEEeCCCcEEEEeC
Q 005646 495 LPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 495 sp~~~~~l~~~s~D~~I~iwd~ 516 (686)
.++++ .++..+..+.+.+.|.
T Consensus 221 ~~~~~-~~~~~~~~~~v~vid~ 241 (373)
T 2mad_H 221 ANKSG-RIVWPVYSGKILQADI 241 (373)
T ss_pred EecCC-EEEEEcCCceEEEEec
Confidence 66433 3333345677777765
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-07 Score=98.20 Aligned_cols=174 Identities=10% Similarity=0.134 Sum_probs=122.2
Q ss_pred eEEEeeCCCEEEEEECC------CcEEEEECCCCeeeeEeeC---C-CCeEEEEEeecCCCEEEEEE-------------
Q 005646 358 LDLSWSKNNYLLSASID------KTVRLWRVGNDHCLRVFPH---S-NYVTCVHFNPVDDNYFISGS------------- 414 (686)
Q Consensus 358 ~~l~~s~~~~L~s~s~D------g~V~iWd~~~~~~~~~~~h---~-~~V~~v~fsp~~~~~l~sgs------------- 414 (686)
..+...|+|.++++..+ +.|.+.|..+.+.+..+.. . ..-..+.|+| +++.+++..
T Consensus 141 h~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~ 219 (462)
T 2ece_A 141 HTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKL 219 (462)
T ss_dssp EEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCT
T ss_pred cceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccch
Confidence 45667788855555544 7899999999999998862 1 2344688899 889888884
Q ss_pred ------cCCcEEEEecCCCcEEEEeccC---CcEEEEEE--ccCCCEEEEEe------cCCcEEEEeCCCCeeeeeeeEE
Q 005646 415 ------IDGKVRIWAVLSCHVVDWVDIR---QIVTAVCY--RPDGQGGIVGS------MMGDCRFYNVSDNHLELDAEIC 477 (686)
Q Consensus 415 ------~Dg~V~iwd~~~~~~~~~~~~~---~~V~~v~~--spdg~~l~~gs------~dg~i~iwd~~~~~~~~~~~~~ 477 (686)
.+.+|.+||+.+++++..+... .....+.| +|+|+++++++ .+++|.+|....+.+.....+.
T Consensus 220 ~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId 299 (462)
T 2ece_A 220 EHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE 299 (462)
T ss_dssp TTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred hhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe
Confidence 3689999999998887776664 34555656 99999988877 4668888877666554433332
Q ss_pred eeccc-cC-----------CCCCeEEEEEeCCCCCeEEEEe-CCCcEEEEeCC---------------------------
Q 005646 478 VHSKK-KA-----------PCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGP--------------------------- 517 (686)
Q Consensus 478 ~~~~~-~~-----------~~~~I~~l~fsp~~~~~l~~~s-~D~~I~iwd~~--------------------------- 517 (686)
+.... .. .......+.++| ++++|.++. ..+.|.+||..
T Consensus 300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~-DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~ 378 (462)
T 2ece_A 300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISL-DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK 378 (462)
T ss_dssp ECCEECCSSCCGGGGGGTEECCCCCCEEECT-TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred CCCccccccccccccccccCCCceeEEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence 22210 00 024578999999 566555554 57899999852
Q ss_pred -----cceeEcCCCCEEEEEe
Q 005646 518 -----NVIGKYKDGKHIVSAG 533 (686)
Q Consensus 518 -----~~~~~~~dg~~l~sgs 533 (686)
..+++++||++|+++.
T Consensus 379 ~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 379 LTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCCEEEEcCCCCEEEEEc
Confidence 3456777898888887
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-07 Score=97.23 Aligned_cols=155 Identities=13% Similarity=0.023 Sum_probs=100.4
Q ss_pred CCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeC-----CCCeEEEEEeecCCCEEEEEEc------CCcEEEEe
Q 005646 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPH-----SNYVTCVHFNPVDDNYFISGSI------DGKVRIWA 423 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h-----~~~V~~v~fsp~~~~~l~sgs~------Dg~V~iwd 423 (686)
..+.+++|++++.++.++.+ .|.+||..+++....... ...++.++++| +++++++... .+.|..++
T Consensus 90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe
Confidence 46889999999954445544 499999988875443321 24689999999 8887766543 24565566
Q ss_pred cCCCcEEEEeccCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCC--CC-eeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 424 VLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVS--DN-HLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 424 ~~~~~~~~~~~~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
+++.............++|+|||+.++++ +.++.|.+||+. ++ .+.....+.. .......+.++.+.+ ++
T Consensus 168 --~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~---~~~~~~~p~gi~~d~-~G 241 (326)
T 2ghs_A 168 --KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID---STGIKGGMDGSVCDA-EG 241 (326)
T ss_dssp --TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE---CTTSSSEEEEEEECT-TS
T ss_pred --CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEE---CCCCCCCCCeeEECC-CC
Confidence 56554444434457889999999877555 457899999986 44 3211111110 111223467888888 56
Q ss_pred CeEEEEeCCCcEEEEeCC
Q 005646 500 SKVMVSCADSQVRILQGP 517 (686)
Q Consensus 500 ~~l~~~s~D~~I~iwd~~ 517 (686)
.+.++...++.|.+|+..
T Consensus 242 ~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 242 HIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp CEEEEEETTTEEEEECTT
T ss_pred CEEEEEeCCCEEEEECCC
Confidence 666666667788888753
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-07 Score=96.61 Aligned_cols=223 Identities=12% Similarity=0.128 Sum_probs=139.4
Q ss_pred cceeeecCCC-ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 205 EGERVRLNEE-DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 205 ~~~~~s~~~~-~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
|...+.++++ .+++....+.|..|+....... ...+...+.+++++++|+++++. ++.|.+||..+++
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---------~~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---------RVTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQS 84 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCCEE---------EEECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTE
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCcEE---------EEeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCc
Confidence 4455666544 4555566789999987653221 11234679999999999965553 4678999987765
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
......... ......+.+++++
T Consensus 85 ~~~~~~~~~----------------------------------------------------------~~~~~~~~di~~d 106 (297)
T 3g4e_A 85 AVVLATVDN----------------------------------------------------------DKKNNRFNDGKVD 106 (297)
T ss_dssp EEEEEECCT----------------------------------------------------------TCSSEEEEEEEEC
T ss_pred EEEEEecCC----------------------------------------------------------CCCCCCCCCEEEC
Confidence 221110000 0012346789999
Q ss_pred CCCEEEEEE-C---------CCcEEEEECCC-CeeeeEeeCCCCeEEEEEeecCCCEE-EEEEcCCcEEEEec--CCCcE
Q 005646 364 KNNYLLSAS-I---------DKTVRLWRVGN-DHCLRVFPHSNYVTCVHFNPVDDNYF-ISGSIDGKVRIWAV--LSCHV 429 (686)
Q Consensus 364 ~~~~L~s~s-~---------Dg~V~iWd~~~-~~~~~~~~h~~~V~~v~fsp~~~~~l-~sgs~Dg~V~iwd~--~~~~~ 429 (686)
|+|.|+.++ . .....||.+.. ++......+....+.++|+| +++.| ++.+.++.|.+||+ .++.+
T Consensus 107 ~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 107 PAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQI 185 (297)
T ss_dssp TTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCE
T ss_pred CCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCcc
Confidence 999333333 1 23345666553 34333344556678999999 88765 45556789999987 45543
Q ss_pred E---EEe---ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEe-CCCCCeE
Q 005646 430 V---DWV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL-PQDSSKV 502 (686)
Q Consensus 430 ~---~~~---~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fs-p~~~~~l 502 (686)
. .+. .....+..++++++|++.++....+.|..||..++++..... .+...+++++|. | +.+.|
T Consensus 186 ~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~--------~p~~~~t~~~f~g~-d~~~L 256 (297)
T 3g4e_A 186 SNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK--------LPVDKTTSCCFGGK-NYSEM 256 (297)
T ss_dssp EEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE--------CSSSBEEEEEEESG-GGCEE
T ss_pred cCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE--------CCCCCceEEEEeCC-CCCEE
Confidence 2 111 223567899999999887777778889999998776543221 123568999998 6 44444
Q ss_pred EEEe
Q 005646 503 MVSC 506 (686)
Q Consensus 503 ~~~s 506 (686)
.+++
T Consensus 257 ~vt~ 260 (297)
T 3g4e_A 257 YVTC 260 (297)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 4433
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.9e-08 Score=101.88 Aligned_cols=172 Identities=13% Similarity=0.051 Sum_probs=112.4
Q ss_pred cCCCCeeEEEeeCCCEEEEEEC------CCcEEEEECCCCeeeeEeeC-------CCCeEEEEEeecCCCEEEEEE---c
Q 005646 352 GHSGEILDLSWSKNNYLLSASI------DKTVRLWRVGNDHCLRVFPH-------SNYVTCVHFNPVDDNYFISGS---I 415 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~~L~s~s~------Dg~V~iWd~~~~~~~~~~~h-------~~~V~~v~fsp~~~~~l~sgs---~ 415 (686)
+|...+..+++.+++.|+.+.. +..|.+||+.+++.+..+.. ...+..++++|.++..+++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 3667899999999995554443 57899999999987776652 245789999983344555555 6
Q ss_pred CCcEEEEecCCCcEEEEeccC-Cc-EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 416 DGKVRIWAVLSCHVVDWVDIR-QI-VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 416 Dg~V~iwd~~~~~~~~~~~~~-~~-V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
++.|.+||+.+++.......+ .. .....+.++|..+.+.+.+|.+..|. ..+.+++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~----------------------~~~~gia 201 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH----------------------LGVNGIV 201 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC----------------------CCEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee----------------------cccceeE
Confidence 889999999988876654321 10 00133444565555555666554432 1255677
Q ss_pred EeCCCCCeEEEEeCCC-cEEEEe-------------------------CCcceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 494 FLPQDSSKVMVSCADS-QVRILQ-------------------------GPNVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~-~I~iwd-------------------------~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
|+| +++.|+++..++ .|..++ ..+.+++.++|.++++...++.|.+||..++
T Consensus 202 ~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 202 LDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADR 279 (343)
T ss_dssp ECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT
T ss_pred ecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCC
Confidence 777 555555554433 333332 1235777779999999999999999998444
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.2e-08 Score=112.68 Aligned_cols=243 Identities=12% Similarity=0.109 Sum_probs=134.1
Q ss_pred ccCCceEEEEEeeCCCEEEE-----EeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 248 AHDGSILTMKFSPDGQYLAS-----AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Las-----gs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
+|...+..++|||||++||- |+.+.+|++||+.+++.+... ........+.|+ ++..++.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws--------------Dg~~l~y 190 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL--------------GNEGFFY 190 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE--------------TTTEEEE
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe--------------CCCEEEE
Confidence 46678999999999999884 333468999999998854431 111101122222 2221111
Q ss_pred Eeec----------cCCceEEEeCCccccccCCCeEEecc-CCCCeeEEEeeCCC-EE-EEEEC---CCcEEEEECCCC-
Q 005646 323 SLRR----------TSESACVVFPPKVFRILEKPLHEFHG-HSGEILDLSWSKNN-YL-LSASI---DKTVRLWRVGND- 385 (686)
Q Consensus 323 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~s~~~-~L-~s~s~---Dg~V~iWd~~~~- 385 (686)
.... .....+..+....-......+..... |...+..+.|+|+| +| ++.+. +..|.+||+.++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 191 SSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp EESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred EEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence 1111 01111222211110000111222233 45567889999999 54 44442 258999999876
Q ss_pred -eeeeEeeCCCCeEEEEEeecCCCEEEEEEcC---CcEEEEecCCCcE---EEEeccCCcEEEEEEccCCCEEEEEecCC
Q 005646 386 -HCLRVFPHSNYVTCVHFNPVDDNYFISGSID---GKVRIWAVLSCHV---VDWVDIRQIVTAVCYRPDGQGGIVGSMMG 458 (686)
Q Consensus 386 -~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D---g~V~iwd~~~~~~---~~~~~~~~~V~~v~~spdg~~l~~gs~dg 458 (686)
.......+....... +++.++.+++....+ +.|..+|+.++.. ..+..+...+. .|+++++.|+....++
T Consensus 271 ~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~ 347 (693)
T 3iuj_A 271 APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVD 347 (693)
T ss_dssp CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEET
T ss_pred CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEEC
Confidence 333333466666555 566244444454443 6799999988654 45566665554 8999999888776644
Q ss_pred ---cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC----CcEEEEeCC
Q 005646 459 ---DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD----SQVRILQGP 517 (686)
Q Consensus 459 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D----~~I~iwd~~ 517 (686)
.|++||+.++.... +. ......+..+.+++ ++..++....+ ++|..||..
T Consensus 348 g~~~l~~~d~~g~~~~~---l~-----~p~~~~~~~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 348 ATARVEQFDYEGKRVRE---VA-----LPGLGSVSGFNGKH-DDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp TEEEEEEECTTSCEEEE---EC-----CSSSSEEEECCCCT-TCSCEEEEEECSSSCCEEEEECTT
T ss_pred CeeEEEEEECCCCeeEE---ee-----cCCCceEEeeecCC-CCCEEEEEecCCCCCCEEEEEECC
Confidence 68999987554321 11 11223466677777 44444333332 566666654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.95 E-value=2.4e-07 Score=94.41 Aligned_cols=181 Identities=12% Similarity=0.067 Sum_probs=124.4
Q ss_pred CCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 353 HSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 353 h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
+..---+..|++++ ++++...++.|..||..+++. ..+.....+.+++++| +++++++ . ++.|.+||..+++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEE
Confidence 44455688999954 666777789999999988765 4556678899999999 8885554 4 678999999988765
Q ss_pred EEecc-----CCcEEEEEEccCCCEEEEEecC---------CcEEEEeCCC-CeeeeeeeEEeeccccCCCCCeEEEEEe
Q 005646 431 DWVDI-----RQIVTAVCYRPDGQGGIVGSMM---------GDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFL 495 (686)
Q Consensus 431 ~~~~~-----~~~V~~v~~spdg~~l~~gs~d---------g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~I~~l~fs 495 (686)
.+... ...++.++++|+|+++++.... ....||.+.. ++.... .. .....++++|+
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~----~~-----~~~~pngi~~s 157 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY----FD-----QVDISNGLDWS 157 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE----EE-----EESBEEEEEEC
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE----ee-----ccccccceEEc
Confidence 44432 2347889999999966654321 2234554432 222110 01 11346899999
Q ss_pred CCCCC-eEEEEeCCCcEEEEeCC----------------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 496 PQDSS-KVMVSCADSQVRILQGP----------------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 496 p~~~~-~l~~~s~D~~I~iwd~~----------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
| +++ ++++.+.++.|.+|+.. ..+++.++|++.++...++.|.+||..+++
T Consensus 158 p-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 158 L-DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK 231 (297)
T ss_dssp T-TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred C-CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence 9 555 45666678889988741 124566688888888888889999988765
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=5.3e-07 Score=93.29 Aligned_cols=211 Identities=12% Similarity=0.024 Sum_probs=130.4
Q ss_pred cceeeecCCC-ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 205 EGERVRLNEE-DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 205 ~~~~~s~~~~-~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
+...++++++ .+++...++.|.+|+...... . .+ .+...|.+++|+++|+++++. .+ .|.+||..+++
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--~------~~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~ 120 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRK--T------VH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGV 120 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--E------EE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--E------EE-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCc
Confidence 4456666644 445566678899998764321 1 11 134579999999999877765 44 48889887665
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
........ . ......+.+++++
T Consensus 121 ~~~~~~~~------------------------------------------------------~----~~~~~~~~~i~~d 142 (326)
T 2ghs_A 121 LTLHAELE------------------------------------------------------S----DLPGNRSNDGRMH 142 (326)
T ss_dssp EEEEECSS------------------------------------------------------T----TCTTEEEEEEEEC
T ss_pred EEEEeeCC------------------------------------------------------C----CCCCCCCCCEEEC
Confidence 21110000 0 0012357889999
Q ss_pred CCC-EEEEEEC------CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEE-EcCCcEEEEecC--CC-cE---
Q 005646 364 KNN-YLLSASI------DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISG-SIDGKVRIWAVL--SC-HV--- 429 (686)
Q Consensus 364 ~~~-~L~s~s~------Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sg-s~Dg~V~iwd~~--~~-~~--- 429 (686)
|+| ++++... .+.|..++ +++......+....+.++|+| +++.++.+ +.++.|.+||+. ++ .+
T Consensus 143 ~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~ 219 (326)
T 2ghs_A 143 PSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKA 219 (326)
T ss_dssp TTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCC
T ss_pred CCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcccCc
Confidence 999 4443322 23455555 555444334445678999999 88766544 457899999986 55 32
Q ss_pred --EEEe-ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEe-C
Q 005646 430 --VDWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL-P 496 (686)
Q Consensus 430 --~~~~-~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fs-p 496 (686)
.... .....+..++++++|++.++...++.|.+||.. ++.... +. .+...+++++|. +
T Consensus 220 ~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~--i~------~~~~~~~~~af~g~ 281 (326)
T 2ghs_A 220 EVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIAR--YE------VPGKQTTCPAFIGP 281 (326)
T ss_dssp EEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEE--EE------CSCSBEEEEEEEST
T ss_pred eEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEE--EE------CCCCCcEEEEEecC
Confidence 1111 123557889999999877776667889999984 433221 11 123458999998 6
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-07 Score=99.06 Aligned_cols=226 Identities=9% Similarity=0.058 Sum_probs=137.7
Q ss_pred cceeeecCCCccceeec--cceEEEEEcCCcccccccccc-CceecccCCceEEEEEeeCCCEEEEEeC-----CCcEEE
Q 005646 205 EGERVRLNEEDAMFCSK--VQRVKVYHCKKRSKELSALYK-GQEIQAHDGSILTMKFSPDGQYLASAGD-----DGVVRL 276 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~--d~~v~vw~~~~~~~~~~~~~~-~~~l~~H~~~I~~l~fspdg~~Lasgs~-----Dg~I~v 276 (686)
....+++++..+++... ++.++||.+.. . .+..... .....+|...+.+|+|+++|+++++-.. ++.|.+
T Consensus 20 ~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g-~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~ 97 (343)
T 2qe8_A 20 GNITLTPDGRLFLSLHQFYQPEMQVAELTQ-D-GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVA 97 (343)
T ss_dssp EEEEECTTSCEEEEECGGGCCSCSEEEEET-T-EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEE
T ss_pred ceEEECCCCCEEEEeCCCCCCceEEEEECC-C-CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEE
Confidence 33455667776666432 23256665541 1 1111110 0122356788999999999876665433 578999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.+++.+..+..+... ..+...
T Consensus 98 ~d~~tg~~~~~~~~~~~~--------------------------------------------------------~~~~~~ 121 (343)
T 2qe8_A 98 WDTLNNQLSRVIYLPPPI--------------------------------------------------------TLSNSF 121 (343)
T ss_dssp EETTTTEEEEEEECCTTT--------------------------------------------------------SCTTCC
T ss_pred EECCCCeEEEEEECChhh--------------------------------------------------------cccccc
Confidence 999888765554432110 013345
Q ss_pred eeEEEeeCC-CE-EEEEE---CCCcEEEEECCCCeeeeEee-C-----------------------------CCCeEEEE
Q 005646 357 ILDLSWSKN-NY-LLSAS---IDKTVRLWRVGNDHCLRVFP-H-----------------------------SNYVTCVH 401 (686)
Q Consensus 357 V~~l~~s~~-~~-L~s~s---~Dg~V~iWd~~~~~~~~~~~-h-----------------------------~~~V~~v~ 401 (686)
+.+++++++ +. +++-. .++.|.+||+.+++..+.+. | ...+..|+
T Consensus 122 ~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia 201 (343)
T 2qe8_A 122 VNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIV 201 (343)
T ss_dssp CCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEE
T ss_pred cceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeE
Confidence 678888875 44 44444 57889999988776655442 1 02368899
Q ss_pred EeecCCCEEEEEEcCC-cEEEEecC---CCc--------EEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe
Q 005646 402 FNPVDDNYFISGSIDG-KVRIWAVL---SCH--------VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg-~V~iwd~~---~~~--------~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
|+| +++.|+.+..++ .|..++.. .+. .+...+.......++++++|+++++...++.|.+||..+++
T Consensus 202 ~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 202 LDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp ECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred ecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence 999 898888888776 44444421 111 01222333456679999999999998889999999985554
Q ss_pred eeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 470 LELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
.... ... .....+++++|.+
T Consensus 281 ~~~~----~~~---~~~~~p~~va~~~ 300 (343)
T 2qe8_A 281 YKLL----VTD---EKLSWTDSFNFGS 300 (343)
T ss_dssp EEEE----EEC---GGGSCEEEEEECT
T ss_pred EEEE----EEC---CceecCCeeEECC
Confidence 3211 111 1235588999988
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-07 Score=96.22 Aligned_cols=225 Identities=9% Similarity=0.038 Sum_probs=141.9
Q ss_pred cceeeecCCC-ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 205 EGERVRLNEE-DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 205 ~~~~~s~~~~-~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
+...+.++++ .+++...++.|..|+.... . ..+..+...+..++++++|+++++...++.|.+|+.. ++
T Consensus 48 egp~~~~~g~~l~~~d~~~~~i~~~~~~g~---~------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLVGRRVLGWREDGT---V------DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ 117 (305)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEETTSC---E------EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEeCCCC---E------EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence 4456777887 4566677889999976321 1 2234466779999999999977666566789888864 43
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc-CCCCeeEEEe
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG-HSGEILDLSW 362 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~ 362 (686)
.. .+. ....+ ....+.++++
T Consensus 118 ~~-~~~----------------------------------------------------------~~~~~~~~~~~~~i~~ 138 (305)
T 3dr2_A 118 AH-LLV----------------------------------------------------------GRYAGKRLNSPNDLIV 138 (305)
T ss_dssp EE-EEE----------------------------------------------------------CEETTEECSCCCCEEE
T ss_pred EE-EEE----------------------------------------------------------eccCCCccCCCCCEEE
Confidence 11 110 00000 1234677889
Q ss_pred eCCC-EEEE----EEC-------------CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC------Cc
Q 005646 363 SKNN-YLLS----ASI-------------DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID------GK 418 (686)
Q Consensus 363 s~~~-~L~s----~s~-------------Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D------g~ 418 (686)
.++| ++++ |.. .+.|..||..+++..... .....+.++|+| +++.|+.+... +.
T Consensus 139 d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~ 216 (305)
T 3dr2_A 139 ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVE 216 (305)
T ss_dssp CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECT-TSSEEEEEECCC---CCCE
T ss_pred CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcC-CCCEEEEEecCCcCCCCCE
Confidence 9998 5554 332 245777777666654444 445678899999 88877777665 78
Q ss_pred EEEEecCCCcEE---EEe-ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEE
Q 005646 419 VRIWAVLSCHVV---DWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (686)
Q Consensus 419 V~iwd~~~~~~~---~~~-~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~f 494 (686)
|++|++....+. .+. .....+..++++++|++ .+++.+ .|.+|+.... .... +.. + ..+..++|
T Consensus 217 i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~~g~-~~~~--~~~------~-~~~~~~~f 284 (305)
T 3dr2_A 217 ITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDSDGQ-LLGH--IPT------P-GTASNCTF 284 (305)
T ss_dssp EEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECTTSC-EEEE--EEC------S-SCCCEEEE
T ss_pred EEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECCCCC-EEEE--EEC------C-CceeEEEE
Confidence 999998765421 111 12334567899999984 444444 5999998543 2221 111 1 24888999
Q ss_pred eCCCCCeEEEEeCCCcEEE
Q 005646 495 LPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 495 sp~~~~~l~~~s~D~~I~i 513 (686)
.| +++.|.+++.++..++
T Consensus 285 ~~-d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 285 DQ-AQQRLFITGGPCLWML 302 (305)
T ss_dssp CT-TSCEEEEEETTEEEEE
T ss_pred eC-CCCEEEEEcCCeEEEE
Confidence 97 7777777777654443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.2e-07 Score=99.06 Aligned_cols=180 Identities=10% Similarity=0.017 Sum_probs=119.7
Q ss_pred EEEeeCCC-EEEEEE----------CCCcEEEEECCCCeeeeEeeCC--------CCeEEEEEeecCCCEEEEEEc--CC
Q 005646 359 DLSWSKNN-YLLSAS----------IDKTVRLWRVGNDHCLRVFPHS--------NYVTCVHFNPVDDNYFISGSI--DG 417 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s----------~Dg~V~iWd~~~~~~~~~~~h~--------~~V~~v~fsp~~~~~l~sgs~--Dg 417 (686)
.++++|++ +|+.+. .++.|.++|..+.+.+..+.-. .....++|+| ++++++++.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCC
Confidence 78999999 555554 4679999999999988877522 3456799999 9999999874 57
Q ss_pred cEEEEecCCCcEEEEeccCCcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCC-eEEEEEe
Q 005646 418 KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR-ITGFQFL 495 (686)
Q Consensus 418 ~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-I~~l~fs 495 (686)
.|.+.|+.+++++..+..... ....|+| +.+++.+.||++.+.++.+++...... ........+ ...+.|.
T Consensus 201 ~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~----~~~~v~~~p~~~~~~~~ 273 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT----EVFHTEDELLINHPAFS 273 (426)
T ss_dssp EEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC----CCCSCTTSCBCSCCEEC
T ss_pred eEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee----eeeccCCCceeeEeeec
Confidence 899999999999876665443 2334443 455566677777777775554331100 000000111 1234567
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCc---------------------------ceeEcCCCCEEEEEeC----------CCcE
Q 005646 496 PQDSSKVMVSCADSQVRILQGPN---------------------------VIGKYKDGKHIVSAGE----------DSNV 538 (686)
Q Consensus 496 p~~~~~l~~~s~D~~I~iwd~~~---------------------------~~~~~~dg~~l~sgs~----------Dg~V 538 (686)
+ ++..++.....+.|.+.|... .+++++++++|+.... ++.|
T Consensus 274 ~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~V 352 (426)
T 3c75_H 274 L-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFV 352 (426)
T ss_dssp T-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEE
T ss_pred C-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEE
Confidence 7 555655556677888887521 1567778887777642 3579
Q ss_pred EEEeCCCCC
Q 005646 539 YMWNCIGHE 547 (686)
Q Consensus 539 ~iWd~~~~~ 547 (686)
.+.|..+.+
T Consensus 353 sVID~~T~k 361 (426)
T 3c75_H 353 VVLNAETGE 361 (426)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCe
Confidence 999998876
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.85 E-value=7.4e-07 Score=93.95 Aligned_cols=256 Identities=8% Similarity=0.006 Sum_probs=155.6
Q ss_pred CCCccceeeccceEEEEEcCCccccccccccCceeccc--CCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005646 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAH--DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (686)
Q Consensus 212 ~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H--~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~ 289 (686)
.++.+.+++.++.|..+|...................+ ...+.+.- ..++..|+.++.++.|..+|..+++.+....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 46677777888889888876543321111100000000 12232222 2245578888899999999999887554333
Q ss_pred cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEE
Q 005646 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL 369 (686)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~ 369 (686)
.... ....++ . .++.++
T Consensus 131 ~~~~----------------------------------------------------------~~~~p~----~-~~~~v~ 147 (376)
T 3q7m_A 131 VAGE----------------------------------------------------------ALSRPV----V-SDGLVL 147 (376)
T ss_dssp CSSC----------------------------------------------------------CCSCCE----E-ETTEEE
T ss_pred CCCc----------------------------------------------------------eEcCCE----E-ECCEEE
Confidence 2110 011111 1 245788
Q ss_pred EEECCCcEEEEECCCCeeeeEeeCCCCeE------EEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcE----
Q 005646 370 SASIDKTVRLWRVGNDHCLRVFPHSNYVT------CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIV---- 439 (686)
Q Consensus 370 s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~------~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V---- 439 (686)
.++.++.|..+|..+++.+..+.....+. .... .+..++.+..++.|..+|..+++.+-......+.
T Consensus 148 v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 224 (376)
T 3q7m_A 148 IHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTE 224 (376)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC------
T ss_pred EEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcc
Confidence 88899999999999999988877443332 2222 2457888888999999999999887444322110
Q ss_pred -E---EEEEcc--CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 440 -T---AVCYRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 440 -~---~v~~sp--dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
. .+...| .+..+++++.+|.+..+|..+++....... .....+... +..+++++.++.|..
T Consensus 225 ~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~----------~~~~~~~~~---~~~l~~~~~~g~l~~ 291 (376)
T 3q7m_A 225 IDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL----------GSVNDFIVD---GNRIYLVDQNDRVMA 291 (376)
T ss_dssp -----CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC----------CCEEEEEEE---TTEEEEEETTCCEEE
T ss_pred cccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC----------CCCCCceEE---CCEEEEEcCCCeEEE
Confidence 0 011112 346788888899999999998876543211 223344433 457777788888888
Q ss_pred EeCCccee-Ec-------------CCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 514 LQGPNVIG-KY-------------KDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 514 wd~~~~~~-~~-------------~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+|..+... +. ..+..|+.++.+|.|+++|..+++
T Consensus 292 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 292 LTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp EETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCC
T ss_pred EECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCc
Confidence 88664321 11 045677788888888888888765
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=6.7e-08 Score=101.28 Aligned_cols=248 Identities=10% Similarity=0.011 Sum_probs=152.0
Q ss_pred eEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe----------CCCcEEEEEeecCeeeeeeccCCC
Q 005646 224 RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 224 ~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
+|.|.|..+... ..++.....+ .+.|+|||++|+.+. .++.|.+||+.+++.+..+..+..
T Consensus 47 ~vsvID~~t~~v-------~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~ 117 (368)
T 1mda_H 47 ENWVSCAGCGVT-------LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA 117 (368)
T ss_dssp EEEEEETTTTEE-------EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred eEEEEECCCCeE-------EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc
Confidence 778887665432 1233333445 799999999998886 368999999999987766543210
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s 372 (686)
. +.. .......++++|+| +|+.+.
T Consensus 118 ~-----------------------------------------------------~~~--~g~~P~~ia~SpDGk~lyVan 142 (368)
T 1mda_H 118 P-----------------------------------------------------RFS--VGPRVHIIGNCASSACLLFFL 142 (368)
T ss_dssp C-----------------------------------------------------SCC--BSCCTTSEEECTTSSCEEEEE
T ss_pred c-----------------------------------------------------ccc--cCCCcceEEEcCCCCEEEEEc
Confidence 0 000 01234578999999 777776
Q ss_pred C--CCcEEE--EECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC-----CcEEE----Eec-cCCc
Q 005646 373 I--DKTVRL--WRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-----CHVVD----WVD-IRQI 438 (686)
Q Consensus 373 ~--Dg~V~i--Wd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-----~~~~~----~~~-~~~~ 438 (686)
. +..|.+ +|+.+ +..+.-.+. +.+.|.....+++.+.||++.+.|+.+ ++++. ... ...+
T Consensus 143 ~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P 216 (368)
T 1mda_H 143 FGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA 216 (368)
T ss_dssp CSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred cCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCc
Confidence 4 467888 99877 455542221 234453456677778899999999987 44331 111 1223
Q ss_pred EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc-ccCC---CCCeEEEEEeCCCCCeEEEEeC-------
Q 005646 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK-KKAP---CKRITGFQFLPQDSSKVMVSCA------- 507 (686)
Q Consensus 439 V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~---~~~I~~l~fsp~~~~~l~~~s~------- 507 (686)
. . .+++..++..+. +.+.+.|+..........+.+... ...+ ......+.|+| +++.++++..
T Consensus 217 ~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~~~~~~~ 290 (368)
T 1mda_H 217 A---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCL 290 (368)
T ss_dssp E---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTT
T ss_pred c---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEEEEEeccccCccc
Confidence 3 3 666666666666 999999997543222111111000 0000 01112268999 5666665432
Q ss_pred --CCcEEEEeCCc--------------ceeEcCCCC-EEEEEe-CCCcEEEEeCCCCC
Q 005646 508 --DSQVRILQGPN--------------VIGKYKDGK-HIVSAG-EDSNVYMWNCIGHE 547 (686)
Q Consensus 508 --D~~I~iwd~~~--------------~~~~~~dg~-~l~sgs-~Dg~V~iWd~~~~~ 547 (686)
++.+.++|..+ .+.+++||+ .+++.. .++.|.++|+.+.+
T Consensus 291 ~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 291 AAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp SCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred ccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 24566999753 377889998 556666 59999999999876
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.8e-10 Score=116.51 Aligned_cols=144 Identities=13% Similarity=0.083 Sum_probs=79.0
Q ss_pred CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccc
Q 005646 261 DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVF 340 (686)
Q Consensus 261 dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (686)
++..|++++.|+.|+.||..+|+.+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------------------------------------------- 37 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------------------------------------------- 37 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--------------------------------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--------------------------------------------------
Confidence 577899999999999999999885544331
Q ss_pred cccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCC--CCeEE-EEEeecCCCEEEEEEcC
Q 005646 341 RILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHS--NYVTC-VHFNPVDDNYFISGSID 416 (686)
Q Consensus 341 ~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~--~~V~~-v~fsp~~~~~l~sgs~D 416 (686)
+.+.+..+..++ .+++++.|+.|+.||..+++.+..+... ..+.+ ..+. .+..+++|+.|
T Consensus 38 --------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~d 101 (369)
T 2hz6_A 38 --------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS--SDGILYMGKKQ 101 (369)
T ss_dssp --------------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEE
T ss_pred --------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe--cCCEEEEEeCC
Confidence 112222233455 6777789999999999999887766521 11110 0111 34578888999
Q ss_pred CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee
Q 005646 417 GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 417 g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
+.|+.||..+++.+....... ...++|++..+++++.++.|+.||..+++....
T Consensus 102 g~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 102 DIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN 155 (369)
T ss_dssp EEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred CEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence 999999999998874443332 245667888999999999999999998876543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-06 Score=92.38 Aligned_cols=234 Identities=13% Similarity=0.172 Sum_probs=145.1
Q ss_pred cCCCcc-ceeeccceEEEEEcCCcc--ccccccccCceec--ccCCceEEEEEeeCCCEEEEEeCC------CcEEEEEe
Q 005646 211 LNEEDA-MFCSKVQRVKVYHCKKRS--KELSALYKGQEIQ--AHDGSILTMKFSPDGQYLASAGDD------GVVRLWQV 279 (686)
Q Consensus 211 ~~~~~l-~~g~~d~~v~vw~~~~~~--~~~~~~~~~~~l~--~H~~~I~~l~fspdg~~Lasgs~D------g~I~vWd~ 279 (686)
.+.+++ +.+-.+++|.|.|..... ..+.+.....++. .....-..+..+|+| +++++..+ +.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 445544 557778999999986432 2222221111111 111245567888999 66666555 67999998
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.+.+.+..+..... -..--.+
T Consensus 172 ~T~~v~~~~~~~~~-----------------------------------------------------------~~~~~Yd 192 (462)
T 2ece_A 172 YSFEPLGKWEIDRG-----------------------------------------------------------DQYLAYD 192 (462)
T ss_dssp TTCCEEEECCSBCT-----------------------------------------------------------TCCCCCC
T ss_pred CCCeEEEEEccCCC-----------------------------------------------------------Cccccce
Confidence 88776555432110 1112246
Q ss_pred EEeeCCC-EEEEEE-------------------CCCcEEEEECCCCeeeeEeeCC---CCeEEEEE--eecCCCEEEEEE
Q 005646 360 LSWSKNN-YLLSAS-------------------IDKTVRLWRVGNDHCLRVFPHS---NYVTCVHF--NPVDDNYFISGS 414 (686)
Q Consensus 360 l~~s~~~-~L~s~s-------------------~Dg~V~iWd~~~~~~~~~~~h~---~~V~~v~f--sp~~~~~l~sgs 414 (686)
+-|+|++ .++++. .+.+|.+||+.+++.+.++.-. .....|.| +| +++++++++
T Consensus 193 ~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~P-dg~~aYV~~ 271 (462)
T 2ece_A 193 FWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDP-TKLMGFINM 271 (462)
T ss_dssp EEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSST-TCCEEEEEE
T ss_pred EEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECC-CCCEEEEEE
Confidence 7788888 666664 4789999999999888888743 34455656 99 888877776
Q ss_pred ------cCCcEEEEecCCCcE-----EEEecc----------------CCcEEEEEEccCCCEEEEEec-CCcEEEEeCC
Q 005646 415 ------IDGKVRIWAVLSCHV-----VDWVDI----------------RQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVS 466 (686)
Q Consensus 415 ------~Dg~V~iwd~~~~~~-----~~~~~~----------------~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~ 466 (686)
.+++|.+|....+.. +..... ...+..|.++|||++|.++.. .+.|.+||+.
T Consensus 272 e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 272 VVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred eeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 567888776655432 111110 244788999999999988776 6889999986
Q ss_pred C-CeeeeeeeEEeeccc--------cCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 467 D-NHLELDAEICVHSKK--------KAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 467 ~-~~~~~~~~~~~~~~~--------~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
. .++.....+...+.. ..-...-..++++| ++++|+++.
T Consensus 352 d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 352 NPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp STTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred CCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 3 333333333332210 00012357899999 777777775
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.3e-06 Score=84.80 Aligned_cols=202 Identities=7% Similarity=-0.037 Sum_probs=132.5
Q ss_pred ceEEEEEeeCCCEEEEEeC--CCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCC
Q 005646 252 SILTMKFSPDGQYLASAGD--DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~--Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (686)
....|.|++++.+.++.+. ++.|++.|+.+++.+..+....
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~------------------------------------- 64 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD------------------------------------- 64 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-------------------------------------
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-------------------------------------
Confidence 3679999998765555553 5799999999998666544211
Q ss_pred ceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCC-CCeEEEEEeecCCC
Q 005646 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHS-NYVTCVHFNPVDDN 408 (686)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~-~~V~~v~fsp~~~~ 408 (686)
+ .....+++..+...++.-.++.|.++|..+.+.+..+... .. ...+++ +++
T Consensus 65 -----------------------~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~-Dg~ 117 (266)
T 2iwa_A 65 -----------------------S-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLAT-DGK 117 (266)
T ss_dssp -----------------------T-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEE-CSS
T ss_pred -----------------------C-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEE-CCC
Confidence 1 1112455543224444456899999999999999998744 22 344666 666
Q ss_pred EEEEEEcCCcEEEEecCCCcEEEEeccCC------cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEee---
Q 005646 409 YFISGSIDGKVRIWAVLSCHVVDWVDIRQ------IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH--- 479 (686)
Q Consensus 409 ~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~------~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~--- 479 (686)
.++++..+++|.++|..+.+.+..+.... .++.+.|. +|+.++....++.|.+.|..+++......+...
T Consensus 118 ~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~ 196 (266)
T 2iwa_A 118 ILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKK 196 (266)
T ss_dssp SEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHH
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccc
Confidence 66666678999999999988775554321 36778888 776555555688999999999887654332110
Q ss_pred --ccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCC-CEEEEEeCCCcEEEEeCCCC
Q 005646 480 --SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDG-KHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 480 --~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg-~~l~sgs~Dg~V~iWd~~~~ 546 (686)
..........++++|+| ++ ++++++...+.|++-++...
T Consensus 197 ~~~~~~~~~~v~nGIa~~~----------------------------~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 197 LIDEGFRDIDVLNGIAWDQ----------------------------ENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp HHHTTCTTCCCEEEEEEET----------------------------TTTEEEEEETTCSEEEEEEEEEC
T ss_pred cccccccccCceEEEEEcC----------------------------CCCEEEEECCCCCeEEEEEEecc
Confidence 00111224568899998 43 34445556677777776553
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-05 Score=85.04 Aligned_cols=253 Identities=10% Similarity=0.062 Sum_probs=154.4
Q ss_pred ecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005646 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (686)
Q Consensus 210 s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~ 289 (686)
...++.+++++.++.|..+|.............. . ....++ . .+..++.++.++.|..+|..+++.+....
T Consensus 100 ~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-~--~~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~ 170 (376)
T 3q7m_A 100 TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG-E--ALSRPV----V--SDGLVLIHTSNGQLQALNEADGAVKWTVN 170 (376)
T ss_dssp EEETTEEEEEETTSEEEEEETTTCCEEEEEECSS-C--CCSCCE----E--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC-c--eEcCCE----E--ECCEEEEEcCCCeEEEEECCCCcEEEEEe
Confidence 3456778888888999999876543321111000 0 011111 1 14478888899999999999888655443
Q ss_pred cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEE
Q 005646 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL 369 (686)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~ 369 (686)
... +...+.+...++. . ++.++
T Consensus 171 ~~~-----------------------------------------------------~~~~~~~~~~~~~----~-~~~v~ 192 (376)
T 3q7m_A 171 LDM-----------------------------------------------------PSLSLRGESAPTT----A-FGAAV 192 (376)
T ss_dssp CCC----------------------------------------------------------CCCCCCEE----E-TTEEE
T ss_pred CCC-----------------------------------------------------CceeecCCCCcEE----E-CCEEE
Confidence 211 0001111122211 1 45778
Q ss_pred EEECCCcEEEEECCCCeeeeEeeCCCCe-----E---EEEEee-cCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEE
Q 005646 370 SASIDKTVRLWRVGNDHCLRVFPHSNYV-----T---CVHFNP-VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT 440 (686)
Q Consensus 370 s~s~Dg~V~iWd~~~~~~~~~~~h~~~V-----~---~v~fsp-~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~ 440 (686)
.++.++.|..+|..+++.+..+....+- . .+.-.| ..+..++.++.++.|..+|..+++.+-..... ...
T Consensus 193 ~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~ 271 (376)
T 3q7m_A 193 VGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-SVN 271 (376)
T ss_dssp ECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-CEE
T ss_pred EEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-CCC
Confidence 8888999999999999988877632110 0 010111 13567888888999999999999877444332 334
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcce
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI 520 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~ 520 (686)
.+.. ++..+++++.+|.+..+|..+++...... . .....+...... +..|++++.++.|..+|..+..
T Consensus 272 ~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~----~---~~~~~~~~~~~~---~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 272 DFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS----D---LLHRLLTSPVLY---NGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp EEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC----T---TTTSCCCCCEEE---TTEEEEECTTSEEEEEETTTCC
T ss_pred CceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec----c---cCCCcccCCEEE---CCEEEEEeCCCeEEEEECCCCc
Confidence 4433 46688888899999999999887654221 0 011112222232 3678888899999999976531
Q ss_pred eE--c------------CCCCEEEEEeCCCcEEEEe
Q 005646 521 GK--Y------------KDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 521 ~~--~------------~dg~~l~sgs~Dg~V~iWd 542 (686)
.. . ..+..|+.++.||.|+.|+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 340 FVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred EEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 11 0 0456778888999999886
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-09 Score=112.59 Aligned_cols=250 Identities=8% Similarity=0.020 Sum_probs=127.9
Q ss_pred CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccC
Q 005646 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 212 ~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
+++.+++++.++.|..||......... +.. +.+.+..+..++..+++++.|+.|+.||..+++.+..+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~-------~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~ 78 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT-------LKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT 78 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE-------EEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE-------ecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence 567888999999999999765543211 111 34555556667878888889999999999888744332210
Q ss_pred CCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEE
Q 005646 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSA 371 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~ 371 (686)
.. .. ....++. ..++.|+++
T Consensus 79 ~~---------------------------------------------------~~-----~~~sp~~----~~~~~v~~g 98 (369)
T 2hz6_A 79 IP---------------------------------------------------EL-----VQASPCR----SSDGILYMG 98 (369)
T ss_dssp HH---------------------------------------------------HH-----HTTCSCC---------CCCC
T ss_pred Cc---------------------------------------------------cc-----cccCceE----ecCCEEEEE
Confidence 00 00 0011111 123477788
Q ss_pred ECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCC---
Q 005646 372 SIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDG--- 448 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg--- 448 (686)
+.|+.|+.||..+++.+..+.... ...++| ++..+++++.|+.|+.||..+++.+-...... ....++.++.
T Consensus 99 ~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~ 173 (369)
T 2hz6_A 99 KKQDIWYVIDLLTGEKQQTLSSAF---ADSLSP-STSLLYLGRTEYTITMYDTKTRELRWNATYFD-YAASLPEDDVDYK 173 (369)
T ss_dssp EEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCC
T ss_pred eCCCEEEEEECCCCcEEEEecCCC---cccccc-cCCEEEEEecCCEEEEEECCCCCEEEeEeccc-ccCccccCCcccc
Confidence 889999999999999988877333 245677 78899999999999999999998653222111 1223333432
Q ss_pred CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEE-EEEeCCCCCeEEE--EeCCCcEEEEeCCcce-----
Q 005646 449 QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITG-FQFLPQDSSKVMV--SCADSQVRILQGPNVI----- 520 (686)
Q Consensus 449 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~-l~fsp~~~~~l~~--~s~D~~I~iwd~~~~~----- 520 (686)
..+++++.+|.++.||..+++...... ...++.. ..+++ ++...+. ...++.++.+|..+..
T Consensus 174 ~~v~~~~~dg~v~a~d~~tG~~~W~~~---------~~~pv~~~~~~~~-dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~ 243 (369)
T 2hz6_A 174 MSHFVSNGDGLVVTVDSESGDVLWIQN---------YASPVVAFYVWQR-EGLRKVMHINVAVETLRYLTFMSGEVGRIT 243 (369)
T ss_dssp CCEEEEETSCEEEEECTTTCCEEEEEE---------CSSCEEEEEECTT-SSCEEECCEEEEHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCEEEEEECCCCcEEEEec---------CCCceEEEEEecC-CceEeccceeecccceeeeehhcCCcccce
Confidence 567788899999999999887654322 1123333 22333 3221100 0012333444432211
Q ss_pred eE---------cC--CCCEEEEEeCCCcEEEEeCCC
Q 005646 521 GK---------YK--DGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 521 ~~---------~~--dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
.| +| .+..|+.++.||.|+..+...
T Consensus 244 ~W~~~~~~~~~sp~~~~g~lyv~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 244 KWKYPFPKETEAKSKLTPTLYVGKYSTSLYASPSMV 279 (369)
T ss_dssp TSCCCCCCHHHHHHHSEEEECBEECSSCEECCEEEE
T ss_pred eeeeccCccccccccccceEEEecccCCEEecCccc
Confidence 11 11 346788889999999998764
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.7e-06 Score=98.82 Aligned_cols=173 Identities=12% Similarity=0.079 Sum_probs=114.7
Q ss_pred CCCcEEEEECCCCeeeeEeeCC--C------------------------------CeEEEEEeecCCCEEEEEEcCCc--
Q 005646 373 IDKTVRLWRVGNDHCLRVFPHS--N------------------------------YVTCVHFNPVDDNYFISGSIDGK-- 418 (686)
Q Consensus 373 ~Dg~V~iWd~~~~~~~~~~~h~--~------------------------------~V~~v~fsp~~~~~l~sgs~Dg~-- 418 (686)
.++.|..||..+++.+..+... . ....++++| +.++++.+..++.
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w 259 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLW 259 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCcc
Confidence 3789999999999998877521 0 112578888 7888999888764
Q ss_pred -----------------EEEEecCCCcEEEEecc---C-------CcEEEEEEccCCC---EEEEEecCCcEEEEeCCCC
Q 005646 419 -----------------VRIWAVLSCHVVDWVDI---R-------QIVTAVCYRPDGQ---GGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 419 -----------------V~iwd~~~~~~~~~~~~---~-------~~V~~v~~spdg~---~l~~gs~dg~i~iwd~~~~ 468 (686)
|..||..+++.+-.... . .++.......+|+ .++.++.+|.++++|..++
T Consensus 260 ~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG 339 (689)
T 1yiq_A 260 DPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG 339 (689)
T ss_dssp CHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred ccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC
Confidence 99999999998743321 1 1222223334675 7889999999999999999
Q ss_pred eeeeeeeEEee-----------------cc---ccC-----------CCCCeEEEEEeCCCCCeEEEEeC----------
Q 005646 469 HLELDAEICVH-----------------SK---KKA-----------PCKRITGFQFLPQDSSKVMVSCA---------- 507 (686)
Q Consensus 469 ~~~~~~~~~~~-----------------~~---~~~-----------~~~~I~~l~fsp~~~~~l~~~s~---------- 507 (686)
+++....+... .. ... -...-..++|+| +..++++...
T Consensus 340 ~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~ 418 (689)
T 1yiq_A 340 ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-DTGLVYIPAHIMSAYYEHIP 418 (689)
T ss_dssp CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEEECCS
T ss_pred CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-CCCEEEEeccccceeeeecc
Confidence 87632211000 00 000 000122367888 4455555421
Q ss_pred -----------------------------------CCcEEEEeCCcce--------------eEcCCCCEEEEEeCCCcE
Q 005646 508 -----------------------------------DSQVRILQGPNVI--------------GKYKDGKHIVSAGEDSNV 538 (686)
Q Consensus 508 -----------------------------------D~~I~iwd~~~~~--------------~~~~dg~~l~sgs~Dg~V 538 (686)
++.|+.||..+.. .+...+.+++.|+.||.|
T Consensus 419 ~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l 498 (689)
T 1yiq_A 419 EAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRV 498 (689)
T ss_dssp SCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEE
T ss_pred ccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcE
Confidence 3779999987542 222377899999999999
Q ss_pred EEEeCCCCC
Q 005646 539 YMWNCIGHE 547 (686)
Q Consensus 539 ~iWd~~~~~ 547 (686)
+.||..+++
T Consensus 499 ~a~D~~tG~ 507 (689)
T 1yiq_A 499 IAYAADTGE 507 (689)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCc
Confidence 999999987
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-06 Score=99.64 Aligned_cols=172 Identities=8% Similarity=-0.001 Sum_probs=115.9
Q ss_pred CCcEEEEECCCCeeeeEeeCCCC---------------------------------eEEEEEeecCCCEEEEEEcCC---
Q 005646 374 DKTVRLWRVGNDHCLRVFPHSNY---------------------------------VTCVHFNPVDDNYFISGSIDG--- 417 (686)
Q Consensus 374 Dg~V~iWd~~~~~~~~~~~h~~~---------------------------------V~~v~fsp~~~~~l~sgs~Dg--- 417 (686)
++.|+.+|..+++.+..+..... ...++++| +.++++.+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 78999999999999887762111 13578888 788888887664
Q ss_pred ----------------cEEEEecCCCcEEEEecc--C--------CcEEEEEEccCC---CEEEEEecCCcEEEEeCCCC
Q 005646 418 ----------------KVRIWAVLSCHVVDWVDI--R--------QIVTAVCYRPDG---QGGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 418 ----------------~V~iwd~~~~~~~~~~~~--~--------~~V~~v~~spdg---~~l~~gs~dg~i~iwd~~~~ 468 (686)
.|..+|..+++.+-.+.. . ....-+....+| ..+++++.+|.++++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 499999999998743321 1 122334444578 68899999999999999999
Q ss_pred eeeeeeeEEeecc---ccCCCC------------------------CeEEEEEeCCCCCeEEEEeC--------------
Q 005646 469 HLELDAEICVHSK---KKAPCK------------------------RITGFQFLPQDSSKVMVSCA-------------- 507 (686)
Q Consensus 469 ~~~~~~~~~~~~~---~~~~~~------------------------~I~~l~fsp~~~~~l~~~s~-------------- 507 (686)
+++.......... ...... .-..++|+| +..++++...
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~ 426 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEF 426 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEEEEEEEECCCEEEECTTCCT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEEEEeChhcceeeeccccccc
Confidence 8765332110000 000000 012568888 5556665432
Q ss_pred -----------------------------CCcEEEEeCCcce--------------eEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 508 -----------------------------DSQVRILQGPNVI--------------GKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 508 -----------------------------D~~I~iwd~~~~~--------------~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
.+.|..||..+.. .+..++.+++.++.||.+++||..
T Consensus 427 g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~ 506 (677)
T 1kb0_A 427 NQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA 506 (677)
T ss_dssp TCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred ccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence 2778899976531 223377888999999999999999
Q ss_pred CCC
Q 005646 545 GHE 547 (686)
Q Consensus 545 ~~~ 547 (686)
+++
T Consensus 507 tG~ 509 (677)
T 1kb0_A 507 TGE 509 (677)
T ss_dssp TCC
T ss_pred CCc
Confidence 987
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-06 Score=98.95 Aligned_cols=237 Identities=9% Similarity=0.040 Sum_probs=140.6
Q ss_pred eeeecCCCccce-----eeccceEEEEEcCCccccccccccCceecccCCc--eEEEEEeeCCCEEEEEeCCCc------
Q 005646 207 ERVRLNEEDAMF-----CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGS--ILTMKFSPDGQYLASAGDDGV------ 273 (686)
Q Consensus 207 ~~~s~~~~~l~~-----g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~--I~~l~fspdg~~Lasgs~Dg~------ 273 (686)
.++++++++++. |+....|+|||+...... ..+... ...++|+ ||+.|+.++.+..
T Consensus 134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~----------~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL----------ETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE----------EEEEEEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCC----------ccccCCceeccEEEe-CCCEEEEEEecCccccccc
Confidence 367888888873 444578999998765321 111112 3567899 9999999988744
Q ss_pred -------EEEEEeecCeeee--eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC-CceEEEeCCcccccc
Q 005646 274 -------VRLWQVVEDERLT--EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS-ESACVVFPPKVFRIL 343 (686)
Q Consensus 274 -------I~vWd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 343 (686)
|++|++.++.... .+..... +......+.+++++..++....... ...+.+++...-
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~----------~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~--- 269 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPA----------QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE--- 269 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGG----------GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST---
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCC----------CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC---
Confidence 8999987654211 1111110 0111223344555544433332222 223333332210
Q ss_pred CCCeEEeccCCCCeeEEEeeCCC--EEEEEECC---CcEEEEECCCCee---eeEeeCCCCeEEEEEeecCCCEEEEEEc
Q 005646 344 EKPLHEFHGHSGEILDLSWSKNN--YLLSASID---KTVRLWRVGNDHC---LRVFPHSNYVTCVHFNPVDDNYFISGSI 415 (686)
Q Consensus 344 ~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~D---g~V~iWd~~~~~~---~~~~~h~~~V~~v~fsp~~~~~l~sgs~ 415 (686)
......+..+....... |++++ +++....+ +.|.++|+.++.. .....|...+. .|+| +++.|+....
T Consensus 270 ~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~-~g~~lv~~~~ 345 (693)
T 3iuj_A 270 NAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS-GSGYLFAEYM 345 (693)
T ss_dssp TCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE-ETTEEEEEEE
T ss_pred CCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE-ECCEEEEEEE
Confidence 11345566666666555 55555 44444443 6799999988765 33344666655 8899 7777766655
Q ss_pred -CC--cEEEEecCCCcEEEEe-ccCCcEEEEEEccCCCEEEEEecC----CcEEEEeCCCCeee
Q 005646 416 -DG--KVRIWAVLSCHVVDWV-DIRQIVTAVCYRPDGQGGIVGSMM----GDCRFYNVSDNHLE 471 (686)
Q Consensus 416 -Dg--~V~iwd~~~~~~~~~~-~~~~~V~~v~~spdg~~l~~gs~d----g~i~iwd~~~~~~~ 471 (686)
++ .|++||+.++...... .....+..+.++|+++.++....+ ++++.||+.+++..
T Consensus 346 ~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 346 VDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp ETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred ECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 44 6899998866543332 234567778888998887776555 88999999876543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.6e-05 Score=77.90 Aligned_cols=187 Identities=12% Similarity=0.088 Sum_probs=121.3
Q ss_pred eEEEEEeeCCCEEEEEeCCC--cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCc
Q 005646 253 ILTMKFSPDGQYLASAGDDG--VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (686)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg--~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (686)
...|.|+ ++.+..+.|.+| .|+++|+.+++.+..+.....
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~------------------------------------- 86 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR------------------------------------- 86 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-------------------------------------
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-------------------------------------
Confidence 4788998 777777878776 899999999987665543210
Q ss_pred eEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEE
Q 005646 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF 410 (686)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l 410 (686)
..--.++...+...+..-.++.+.++|..+.+.+..+.....=..++ + ++..|
T Consensus 87 ------------------------~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~-dg~~L 139 (262)
T 3nol_A 87 ------------------------YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--H-NDQYL 139 (262)
T ss_dssp ------------------------CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--E-CSSCE
T ss_pred ------------------------cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--c-CCCEE
Confidence 01112333322233334468899999999999999998544323344 5 66666
Q ss_pred EEEEcCCcEEEEecCCCcEEEEeccC------CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc---
Q 005646 411 ISGSIDGKVRIWAVLSCHVVDWVDIR------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK--- 481 (686)
Q Consensus 411 ~sgs~Dg~V~iwd~~~~~~~~~~~~~------~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~--- 481 (686)
+.+..+++|.++|..+.+++..+... ..++.+.|. +|+..+..-.++.|.+.|..+++......+.....
T Consensus 140 ~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~ 218 (262)
T 3nol_A 140 IMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAG 218 (262)
T ss_dssp EECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSC
T ss_pred EEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccc
Confidence 66666788999999999887655432 234557776 77655555568899999999998765443321110
Q ss_pred -ccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 482 -KKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 482 -~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
......-.++|+|+| +.+.|++++
T Consensus 219 ~~~~~~~vlNGIA~dp-~~~~lfVTG 243 (262)
T 3nol_A 219 PLPSPIDVLNGIAWDK-EHHRLFVTG 243 (262)
T ss_dssp SCCSSCCCEEEEEEET-TTTEEEEEE
T ss_pred cccCcCCceEEEEEcC-CCCEEEEEC
Confidence 011234578899999 444444444
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-05 Score=78.74 Aligned_cols=185 Identities=10% Similarity=0.025 Sum_probs=122.8
Q ss_pred eEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceE
Q 005646 253 ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332 (686)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (686)
...|.|+ ++.+..+.|.+|.|+++|+.+++.+..+ ....
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~--------------------------------------- 95 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN--------------------------------------- 95 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT---------------------------------------
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC---------------------------------------
Confidence 4688887 4677788888999999999998855443 2110
Q ss_pred EEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEE
Q 005646 333 VVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFIS 412 (686)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~s 412 (686)
..--.+++..+...+..-.++.+.+||..+.+.+..+.....-..++ + ++..|+.
T Consensus 96 ----------------------~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~-Dg~~L~v 150 (268)
T 3nok_A 96 ----------------------IFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--Y-WNGKLVR 150 (268)
T ss_dssp ----------------------CCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--E-ETTEEEE
T ss_pred ----------------------cceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--c-CCCEEEE
Confidence 01122444333344445578999999999999999998544434454 4 6677777
Q ss_pred EEcCCcEEEEecCCCcEEEEeccCC------cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc-----
Q 005646 413 GSIDGKVRIWAVLSCHVVDWVDIRQ------IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK----- 481 (686)
Q Consensus 413 gs~Dg~V~iwd~~~~~~~~~~~~~~------~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~----- 481 (686)
+..+++|.++|..+.+++..+.... .++.+.|. +|+.++..-.++.|.+.|..+++......+.....
T Consensus 151 SdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~ 229 (268)
T 3nok_A 151 SDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQ 229 (268)
T ss_dssp ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTT
T ss_pred ECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccccc
Confidence 7778999999999998876554322 35667776 77655555568899999999998765443321100
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEE
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVS 505 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~ 505 (686)
......-.++|++.|+ .+.|+++
T Consensus 230 ~~~~~~vlNGIA~dp~-~~rlfVT 252 (268)
T 3nok_A 230 VTNPEAVLNGIAVEPG-SGRIFMT 252 (268)
T ss_dssp CCCTTCCEEEEEECTT-TCCEEEE
T ss_pred ccCcCCceEEEEEcCC-CCEEEEe
Confidence 1112345789999994 3334333
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.47 E-value=5.7e-06 Score=90.35 Aligned_cols=169 Identities=10% Similarity=0.009 Sum_probs=117.1
Q ss_pred CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCC------------------------------------
Q 005646 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG------------------------------------ 417 (686)
Q Consensus 374 Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg------------------------------------ 417 (686)
++.+.+.|..+.+.+..+.-.+....++++| +++++++.+.+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred CceEEEEECCCCeEEEEEEeCCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 4578899999998888887433567788999 888888888553
Q ss_pred --cEEEEecCC--CcE-EEEeccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCee------eeeeeEEeeccccCC
Q 005646 418 --KVRIWAVLS--CHV-VDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHL------ELDAEICVHSKKKAP 485 (686)
Q Consensus 418 --~V~iwd~~~--~~~-~~~~~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~ 485 (686)
.|.+.|..+ ++. +..+.......++.++|||+++++++ .+.+|.++|+.+.+. .....+.. ...-
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~---~v~v 329 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA---EPEL 329 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE---CCBC
T ss_pred ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE---EcCC
Confidence 477777776 444 44555555667899999999888765 478899999985421 11111110 1122
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc------------------------------eeEcCCCCEEEEEeC-
Q 005646 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------------------------------IGKYKDGKHIVSAGE- 534 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~------------------------------~~~~~dg~~l~sgs~- 534 (686)
......++|+| ++...++...|++|.+||.... +.+.+||++|+++..
T Consensus 330 G~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 330 GLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp CSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred CCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence 35588999999 5566667778999999995431 134569999999863
Q ss_pred --CCc----------EEEEeCCCCC
Q 005646 535 --DSN----------VYMWNCIGHE 547 (686)
Q Consensus 535 --Dg~----------V~iWd~~~~~ 547 (686)
|+. -.++|+.+++
T Consensus 409 skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 409 SKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CccccccCCCCCCCcceEEEcCCCc
Confidence 443 2888986554
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=8.3e-06 Score=92.96 Aligned_cols=266 Identities=8% Similarity=0.018 Sum_probs=152.9
Q ss_pred ecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC------CCcEEEEEeecCe
Q 005646 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD------DGVVRLWQVVEDE 283 (686)
Q Consensus 210 s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~------Dg~I~vWd~~~~~ 283 (686)
...++.+++++.++.+..+|..+......... ..... +...+.+--...++ .++.++. ++.|+.+|..+|+
T Consensus 125 a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~-~~~~~-~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 125 ALWKGKVYVGAWDGRLIALDAATGKEVWHQNT-FEGQK-GSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGE 201 (677)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEEET-TTTCC-SSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred eEECCEEEEEcCCCEEEEEECCCCCEEeeecC-CcCcC-cCcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCc
Confidence 34667788888899999998865443221110 00000 00111111111234 4555443 7999999999999
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
.+-.+.............. . .... ...|... .......+.......+++.
T Consensus 202 ~~W~~~~~~~~~~~~~~~~-------------~-------~~~g---------~~~w~~~-g~~~~~~~g~~~w~~~~~d 251 (677)
T 1kb0_A 202 RKWRWFSVPGDPSKPFEDE-------------S-------MKRA---------ARTWDPS-GKWWEAGGGGTMWDSMTFD 251 (677)
T ss_dssp EEEEEESSCCCTTSCCSSH-------------H-------HHHH---------HTTSCGG-GCHHHHCEECCCCSCEEEE
T ss_pred EEEEeccCCCCcccccccc-------------c-------cccc---------ccccccc-CceeEeCCCcccccceeEc
Confidence 8776654322110000000 0 0000 0000000 0000000122233467778
Q ss_pred CCC-EEEEEECCC-------------------cEEEEECCCCeeeeEee---CC-------CCeEEEEEeecCC---CEE
Q 005646 364 KNN-YLLSASIDK-------------------TVRLWRVGNDHCLRVFP---HS-------NYVTCVHFNPVDD---NYF 410 (686)
Q Consensus 364 ~~~-~L~s~s~Dg-------------------~V~iWd~~~~~~~~~~~---h~-------~~V~~v~fsp~~~---~~l 410 (686)
+++ +|+.++.++ .|..+|..+++.+..+. |. ....-+.... ++ ..+
T Consensus 252 ~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l 330 (677)
T 1kb0_A 252 AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVI 330 (677)
T ss_dssp TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEE
T ss_pred CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEE
Confidence 876 777666553 59999999999998876 21 1223334444 66 689
Q ss_pred EEEEcCCcEEEEecCCCcEEEEeccC------------CcE------------------------EEEEEccCCCEEEEE
Q 005646 411 ISGSIDGKVRIWAVLSCHVVDWVDIR------------QIV------------------------TAVCYRPDGQGGIVG 454 (686)
Q Consensus 411 ~sgs~Dg~V~iwd~~~~~~~~~~~~~------------~~V------------------------~~v~~spdg~~l~~g 454 (686)
+.++.+|.|+++|..+++++...... .++ ..++|+|++.++++.
T Consensus 331 ~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~ 410 (677)
T 1kb0_A 331 LHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLP 410 (677)
T ss_dssp EECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEE
T ss_pred EEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEe
Confidence 99999999999999999987433211 011 146889998888886
Q ss_pred ecC-------------------------------------------CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEE
Q 005646 455 SMM-------------------------------------------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITG 491 (686)
Q Consensus 455 s~d-------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~ 491 (686)
..+ |.|..||+.+++....... ..++.+
T Consensus 411 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---------~~~~~~ 481 (677)
T 1kb0_A 411 AQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---------VSPWNG 481 (677)
T ss_dssp EEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---------SSSCCC
T ss_pred ChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---------CCCCcC
Confidence 442 7899999999987654332 122334
Q ss_pred EEEeCCCCCeEEEEeCCCcEEEEeCCcc
Q 005646 492 FQFLPQDSSKVMVSCADSQVRILQGPNV 519 (686)
Q Consensus 492 l~fsp~~~~~l~~~s~D~~I~iwd~~~~ 519 (686)
..+.. .+.++++++.|+.+++||..+.
T Consensus 482 g~~~~-~g~~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 482 GTLTT-AGNVVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp CEEEE-TTTEEEEECTTSEEEEEETTTC
T ss_pred cceEe-CCCEEEEECCCCcEEEEECCCC
Confidence 44555 5678888999999999997753
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00011 Score=73.23 Aligned_cols=184 Identities=8% Similarity=0.024 Sum_probs=115.8
Q ss_pred CeeEEEeeCCC-EEE-EEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE
Q 005646 356 EILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~-s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~ 432 (686)
.+..++|++++ .|+ +-...+.|..+++........+. .......++++|..+.++++-...+.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 46789999865 444 55567899999998765443333 2357899999983344555555678999999875443333
Q ss_pred eccC-CcEEEEEEccCCCEEEEEec---CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 433 VDIR-QIVTAVCYRPDGQGGIVGSM---MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 433 ~~~~-~~V~~v~~spdg~~l~~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
.... .....++++|++..|+++.. .+.|..+++....... +. ........+++++|+++.++++....
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~-----~~---~~~~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI-----LA---QDNLGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE-----EE---CTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE-----EE---ECCCCCCcEEEEcCCCCEEEEEECCC
Confidence 3222 45789999997666665554 3688888886433211 10 01224578999999545555666677
Q ss_pred CcEEEEeCCcce------------eEcCCCCEEEEEe-CCCcEEEEeCCCCC
Q 005646 509 SQVRILQGPNVI------------GKYKDGKHIVSAG-EDSNVYMWNCIGHE 547 (686)
Q Consensus 509 ~~I~iwd~~~~~------------~~~~dg~~l~sgs-~Dg~V~iWd~~~~~ 547 (686)
+.|.+++..... ....++.+|..+. ..+.|.++|..+++
T Consensus 189 ~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp TEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTE
T ss_pred CEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCC
Confidence 899999865310 1111344444443 45678878777654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.38 E-value=9.8e-05 Score=71.67 Aligned_cols=179 Identities=9% Similarity=0.032 Sum_probs=117.9
Q ss_pred ceEEEEEeeCCCEEEEEeCCC--cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCC
Q 005646 252 SILTMKFSPDGQYLASAGDDG--VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg--~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (686)
-...+.|++ +.+..+.|.+| .|+++|+.+++.+..+..+...
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~----------------------------------- 65 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY----------------------------------- 65 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC-----------------------------------
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc-----------------------------------
Confidence 466899986 66677777754 8999999999876655432210
Q ss_pred ceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCE
Q 005646 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY 409 (686)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~ 409 (686)
.--.++...+......-.++.+.+||..+.+.+.++.....=..++ + ++..
T Consensus 66 --------------------------fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~-dg~~ 116 (243)
T 3mbr_X 66 --------------------------FGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--S-DDSH 116 (243)
T ss_dssp --------------------------CEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--E-CSSC
T ss_pred --------------------------ceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--e-CCCE
Confidence 0012333332233344568999999999999999998554434454 4 5666
Q ss_pred EEEEEcCCcEEEEecCCCcEEEEeccC------CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeec-cc
Q 005646 410 FISGSIDGKVRIWAVLSCHVVDWVDIR------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS-KK 482 (686)
Q Consensus 410 l~sgs~Dg~V~iwd~~~~~~~~~~~~~------~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~-~~ 482 (686)
|+.+..+++|.++|..+.+++..+... ..++.+.|. +|+.++..-.+..|.+.|..+++......+.... ..
T Consensus 117 L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~ 195 (243)
T 3mbr_X 117 LYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDA 195 (243)
T ss_dssp EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTT
T ss_pred EEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccc
Confidence 666667899999999999887655432 245566665 6765555546889999999999876543322111 00
Q ss_pred ----cCCCCCeEEEEEeC
Q 005646 483 ----KAPCKRITGFQFLP 496 (686)
Q Consensus 483 ----~~~~~~I~~l~fsp 496 (686)
.....-.++|++.|
T Consensus 196 ~~~~~~~~~vlNGIA~d~ 213 (243)
T 3mbr_X 196 DALTDSTNDVLNGIAFDA 213 (243)
T ss_dssp TSCCCTTSSCEEEEEEET
T ss_pred ccccCCcCCceEEEEEcC
Confidence 11234568899998
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=3.8e-05 Score=76.06 Aligned_cols=155 Identities=6% Similarity=0.029 Sum_probs=105.3
Q ss_pred CeeEEEeeCCCEEEEE-EC--CCcEEEEECCCCeeeeEeeCCC--CeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 356 EILDLSWSKNNYLLSA-SI--DKTVRLWRVGNDHCLRVFPHSN--YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~-s~--Dg~V~iWd~~~~~~~~~~~h~~--~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
....|.|++++.|+.+ +. ++.|++.|+.+++.+..+.-.. ....+++. .+.++++.-.++.|.++|..+.+++
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 4679999998844444 33 6899999999999998876333 23345543 3344455556789999999999988
Q ss_pred EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCc
Q 005646 431 DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (686)
Q Consensus 431 ~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~ 510 (686)
..+... .-....+++||+.++++..+++|.++|..+.+......+... ..+...++.+.|. ++...+....++.
T Consensus 100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~---~~p~~~~nele~~--dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN---GHRVIRLNELEYI--NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET---TEECCCEEEEEEE--TTEEEEEETTSSE
T ss_pred EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC---CcccccceeEEEE--CCEEEEecCCCCe
Confidence 766544 112344667898888888889999999988776543332211 1122347788887 3444444446789
Q ss_pred EEEEeCCc
Q 005646 511 VRILQGPN 518 (686)
Q Consensus 511 I~iwd~~~ 518 (686)
|.+.|..+
T Consensus 174 V~vID~~t 181 (266)
T 2iwa_A 174 IARISAKD 181 (266)
T ss_dssp EEEEETTT
T ss_pred EEEEECCC
Confidence 99999875
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.2e-05 Score=78.53 Aligned_cols=180 Identities=11% Similarity=0.035 Sum_probs=107.1
Q ss_pred CeeEEEeeC-CCEEEEEECCCcEEEEECCCCeeeeEee------CCCCeEEEEEeecCCCEEEEEEc-------------
Q 005646 356 EILDLSWSK-NNYLLSASIDKTVRLWRVGNDHCLRVFP------HSNYVTCVHFNPVDDNYFISGSI------------- 415 (686)
Q Consensus 356 ~V~~l~~s~-~~~L~s~s~Dg~V~iWd~~~~~~~~~~~------h~~~V~~v~fsp~~~~~l~sgs~------------- 415 (686)
.+..+++.+ ++.|+.+...+.|..+|..++.. ..+. .....+.+++.|.+++++++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 467899997 67777776666688888775543 2222 12457889998734566655432
Q ss_pred ----CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeE
Q 005646 416 ----DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (686)
Q Consensus 416 ----Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~ 490 (686)
++.|..||..+++.......-.....++++|+|+.|+++ +..+.|.+|++..........+ .. . . . ..
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~--~~-~--~-g-P~ 232 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL--VK-I--P-N-PG 232 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE--EE-C--S-S-EE
T ss_pred ccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE--Ee-C--C-C-CC
Confidence 367889998877655443333445679999999976665 5568999999875321110001 01 1 1 2 67
Q ss_pred EEEEeCCCCCeEEEEeC----------CCcEEEEeCCcc------------------eeEcCCCCEEEEEeCCCcEEEEe
Q 005646 491 GFQFLPQDSSKVMVSCA----------DSQVRILQGPNV------------------IGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 491 ~l~fsp~~~~~l~~~s~----------D~~I~iwd~~~~------------------~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
++++.+ ++.+.++... .+.|..+|.... +++ .+++++++....+.|.+++
T Consensus 233 gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 233 NIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp EEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred CeEECC-CCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence 888888 5665555433 355666653211 111 2444455544566677776
Q ss_pred CCC
Q 005646 543 CIG 545 (686)
Q Consensus 543 ~~~ 545 (686)
+..
T Consensus 311 ~~~ 313 (322)
T 2fp8_A 311 YDK 313 (322)
T ss_dssp C--
T ss_pred ccc
Confidence 653
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-05 Score=83.83 Aligned_cols=237 Identities=8% Similarity=-0.059 Sum_probs=134.2
Q ss_pred ceeeecCCCccceee----------ccceEEEEEcCCccccccccccCceeccc-------CCceEEEEEeeCCCEEEEE
Q 005646 206 GERVRLNEEDAMFCS----------KVQRVKVYHCKKRSKELSALYKGQEIQAH-------DGSILTMKFSPDGQYLASA 268 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~----------~d~~v~vw~~~~~~~~~~~~~~~~~l~~H-------~~~I~~l~fspdg~~Lasg 268 (686)
...+++++.++.++. .++.|.+||...... . .++..+ ......+.|+|||++|+++
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v------~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVa 141 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-I------ADIELPDAPRFSVGPRVHIIGNCASSACLLFF 141 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-E------EEEEETTSCSCCBSCCTTSEEECTTSSCEEEE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-E------EEEECCCccccccCCCcceEEEcCCCCEEEEE
Confidence 467888888887775 478999999876533 1 222111 1235579999999999998
Q ss_pred eC--CCcEEE--EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccC
Q 005646 269 GD--DGVVRL--WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILE 344 (686)
Q Consensus 269 s~--Dg~I~v--Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (686)
.. +..|.+ +|+.+ +..+..... ..+.+.... ..+....++............. ...+..
T Consensus 142 n~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~--~~~~~~~dg~~~~vd~~~~~~~--------~~~v~~ 204 (368)
T 1mda_H 142 LFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAA--THYLGSCPASLAASDLAAAPAA--------AGIVGA 204 (368)
T ss_dssp ECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETT--EEECCCCTTSCEEEECCSSCCC--------CEECCC
T ss_pred ccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCe--EEEEEcCCCCEEEEECcccccc--------CCeEEE
Confidence 75 467888 99877 344433211 111111110 0111111111111111100000 000000
Q ss_pred CCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCC--eeeeEee-----------CCCCeEEEEEeecCCCEE
Q 005646 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND--HCLRVFP-----------HSNYVTCVHFNPVDDNYF 410 (686)
Q Consensus 345 ~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~--~~~~~~~-----------h~~~V~~v~fsp~~~~~l 410 (686)
.....+.-...+. . .+++ .++..+. +.|.+.|+... +.+..+. .......++|+| +++.+
T Consensus 205 ~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~l 278 (368)
T 1mda_H 205 QCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGI 278 (368)
T ss_dssp CSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEE
T ss_pred EeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEE
Confidence 0000000112232 3 4555 6555556 99999998654 2333321 112222378999 87777
Q ss_pred EEEEc-C--------CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCE-EEEEe-cCCcEEEEeCCCCeeee
Q 005646 411 ISGSI-D--------GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG-GIVGS-MMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 411 ~sgs~-D--------g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~-l~~gs-~dg~i~iwd~~~~~~~~ 472 (686)
+.+.. + +.+.++|+.+.+.+..+........++|+|||+. +++.. .++.|.++|+.+.+...
T Consensus 279 yV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp EEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred EEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 76543 2 3566999999999877776667899999999985 45555 48999999999988654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.29 E-value=4.1e-05 Score=78.40 Aligned_cols=173 Identities=13% Similarity=0.022 Sum_probs=107.8
Q ss_pred CeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe-
Q 005646 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV- 433 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~- 433 (686)
.+.++...+++.|+.++.++.|..+|.. ++.+..+. ....+.++.+.+ ++.+++ ++ +.|..+| .+++.+...
T Consensus 138 ~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g~~~~~~~ 211 (330)
T 3hxj_A 138 IYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIYF-GS--DKVYAIN-PDGTEKWNFY 211 (330)
T ss_dssp CCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TTSCEEEEEC
T ss_pred eeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCCcEEEEEc
Confidence 3445566667777788888999999998 77776666 455677777766 666544 44 8899999 666655333
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
.....+.++...++|. +.+++.++.+..+|... +.... ... ....+..+.+.+ ...|.+++.++.|..
T Consensus 212 ~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g-~~~~~--~~~------~~~~~~~~~~~~--~g~l~v~t~~ggl~~ 279 (330)
T 3hxj_A 212 AGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG-TEKWR--FKT------GKRIESSPVIGN--TDTIYFGSYDGHLYA 279 (330)
T ss_dssp CSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS-CEEEE--EEC------SSCCCSCCEECT--TSCEEEECTTCEEEE
T ss_pred cCCcceeceEECCCCe-EEEEcCCCeEEEECCCC-CEeEE--eeC------CCCccccceEcC--CCeEEEecCCCCEEE
Confidence 3345577888888875 55566788888888543 32221 111 111123344433 456777888888888
Q ss_pred EeCCcc--------------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 514 LQGPNV--------------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 514 wd~~~~--------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+|.... +...++|+ |..|+.+|.+++......+
T Consensus 280 ~d~~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 280 INPDGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp ECTTSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred ECCCCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 885321 11223444 5568889999988776543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.28 E-value=6.8e-05 Score=85.56 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=80.0
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEeeCCC--C--------------------------------------eEEEEEeecC
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSN--Y--------------------------------------VTCVHFNPVD 406 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~--~--------------------------------------V~~v~fsp~~ 406 (686)
.|+.++.+|.++++|..+++.+....... . ...++|+| +
T Consensus 321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~ 399 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-D 399 (689)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-T
T ss_pred EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-C
Confidence 57888899999999999999875433110 0 11278888 6
Q ss_pred CCEEEEEEc---------------------------------------------CCcEEEEecCCCcEEEEeccCCcEEE
Q 005646 407 DNYFISGSI---------------------------------------------DGKVRIWAVLSCHVVDWVDIRQIVTA 441 (686)
Q Consensus 407 ~~~l~sgs~---------------------------------------------Dg~V~iwd~~~~~~~~~~~~~~~V~~ 441 (686)
..++++... +|.|+.||+.+++++-...+..++..
T Consensus 400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~ 479 (689)
T 1yiq_A 400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNG 479 (689)
T ss_dssp TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCC
T ss_pred CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccC
Confidence 667776532 37899999999998865555555555
Q ss_pred EEEccCCCEEEEEecCCcEEEEeCCCCeeeee
Q 005646 442 VCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 442 v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
..+...+..+++|+.||.++.||..++++...
T Consensus 480 g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~ 511 (689)
T 1yiq_A 480 GTLSTAGNLVFEGSADGRVIAYAADTGEKLWE 511 (689)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccceECCCEEEEECCCCcEEEEECCCCcccee
Confidence 56677888999999999999999999987654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.28 E-value=3.1e-05 Score=84.61 Aligned_cols=171 Identities=15% Similarity=0.138 Sum_probs=121.5
Q ss_pred CC-EEEEE-ECCCcEEEEECCCCeeeeEee--CCCCeEEEEE-e-ecCCCEEEEEE------------------cCCcEE
Q 005646 365 NN-YLLSA-SIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHF-N-PVDDNYFISGS------------------IDGKVR 420 (686)
Q Consensus 365 ~~-~L~s~-s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~f-s-p~~~~~l~sgs------------------~Dg~V~ 420 (686)
|| +|+.. ..+..|.+.|+.+.++.+.+. ....+..+++ . | ++.++++++ .++.|.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEE
Confidence 66 55544 456679999999999988544 5567889998 4 7 888888885 246799
Q ss_pred EEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCC--------------------------------------cEEE
Q 005646 421 IWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG--------------------------------------DCRF 462 (686)
Q Consensus 421 iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg--------------------------------------~i~i 462 (686)
++|..+.+++...........++++|||+++++.+.+. .|.+
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 99999998887666544667788999999999988553 2445
Q ss_pred EeCCC--CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE-eCCCcEEEEeCCcc--------------------
Q 005646 463 YNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CADSQVRILQGPNV-------------------- 519 (686)
Q Consensus 463 wd~~~--~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~-s~D~~I~iwd~~~~-------------------- 519 (686)
.|..+ ++.. ...+.. .....++.++| |+++++++ ..+.+|.++|..+.
T Consensus 259 ID~~~~~~~~~-~~~Ipv-------g~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 259 VDGRKEASSLF-TRYIPI-------ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp EECSGGGCCSS-EEEEEE-------ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred EeCcccCCcee-EEEEec-------CCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 55444 1110 001111 12356799999 66655554 57899999997732
Q ss_pred ------eeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 520 ------IGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 520 ------~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
++|.++|...++.-.|++|-+||++.
T Consensus 330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 46888995555667899999999976
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00029 Score=72.21 Aligned_cols=153 Identities=8% Similarity=-0.004 Sum_probs=93.5
Q ss_pred CeeEEEeeC-CCEEEEEEC------------------CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEE-Ec
Q 005646 356 EILDLSWSK-NNYLLSASI------------------DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISG-SI 415 (686)
Q Consensus 356 ~V~~l~~s~-~~~L~s~s~------------------Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sg-s~ 415 (686)
...++++.+ +|.|+.+.. ++.|..||..+++.......-...+.|+|+| ++++|+.+ ..
T Consensus 127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~-dg~~lyv~d~~ 205 (322)
T 2fp8_A 127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA-DSSFVLVAEFL 205 (322)
T ss_dssp CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECT-TSSEEEEEEGG
T ss_pred ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECC-CCCEEEEEeCC
Confidence 356788888 773333322 3678888887776544333334456799999 88865555 55
Q ss_pred CCcEEEEecCCC---cEEEEeccCCcEEEEEEccCCCEEEEEec----------CCcEEEEeCCCCeeeeeeeEEeeccc
Q 005646 416 DGKVRIWAVLSC---HVVDWVDIRQIVTAVCYRPDGQGGIVGSM----------MGDCRFYNVSDNHLELDAEICVHSKK 482 (686)
Q Consensus 416 Dg~V~iwd~~~~---~~~~~~~~~~~V~~v~~spdg~~l~~gs~----------dg~i~iwd~~~~~~~~~~~~~~~~~~ 482 (686)
.+.|.+|++... ....+..... ...+++.++|++.++... .+.|..+|.. ++.... +... .
T Consensus 206 ~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~--~~~~--~ 279 (322)
T 2fp8_A 206 SHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEV--IPLP--P 279 (322)
T ss_dssp GTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEE--EECC--T
T ss_pred CCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEE--EECC--C
Confidence 689999998752 2222222334 788999999986666544 4678888875 333221 1111 1
Q ss_pred cCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 483 ~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
......++++.+. ++.++++....+.|..++..
T Consensus 280 g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 280 PFAGEHFEQIQEH--DGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TTTTSCCCEEEEE--TTEEEEECSSCSEEEEEEC-
T ss_pred CCccccceEEEEe--CCEEEEeecCCCceEEEecc
Confidence 1113456777663 45566666678889988865
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00088 Score=66.43 Aligned_cols=151 Identities=5% Similarity=-0.074 Sum_probs=92.5
Q ss_pred CCeeEEEeeCCC-EEE-EEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEc---CCcEEEEecCCCc
Q 005646 355 GEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSI---DGKVRIWAVLSCH 428 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~-s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~---Dg~V~iwd~~~~~ 428 (686)
.....+++.+++ .|+ +-...+.|.++++.......... .......++++| ++..|+.+.. .+.|..+++....
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTN 157 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCCCC
Confidence 356789999864 444 44557889999987543322233 225678999999 6555555543 3688888876443
Q ss_pred EEEEe-ccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 429 VVDWV-DIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 429 ~~~~~-~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
..... ..-.....++++|++..|+++. ..+.|.++|+.+...... .. ......++++. ++.++++..
T Consensus 158 ~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~----~~-----~~~~P~gi~~d--~~~lyva~~ 226 (267)
T 1npe_A 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV----LE-----GLQYPFAVTSY--GKNLYYTDW 226 (267)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE----EE-----CCCSEEEEEEE--TTEEEEEET
T ss_pred cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE----ec-----CCCCceEEEEe--CCEEEEEEC
Confidence 22222 2234578999999877665554 567899999975432211 11 11234566653 334444444
Q ss_pred CCCcEEEEeCC
Q 005646 507 ADSQVRILQGP 517 (686)
Q Consensus 507 ~D~~I~iwd~~ 517 (686)
..+.|.++|..
T Consensus 227 ~~~~v~~~d~~ 237 (267)
T 1npe_A 227 KTNSVIAMDLA 237 (267)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEEeCC
Confidence 56788888765
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=8.5e-05 Score=84.49 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=71.4
Q ss_pred CCcEEEEECCCCeeeeEeeCC--C------------------------------CeEEEEEeecCCCEEEEEEcCCc---
Q 005646 374 DKTVRLWRVGNDHCLRVFPHS--N------------------------------YVTCVHFNPVDDNYFISGSIDGK--- 418 (686)
Q Consensus 374 Dg~V~iWd~~~~~~~~~~~h~--~------------------------------~V~~v~fsp~~~~~l~sgs~Dg~--- 418 (686)
++.|..+|..+++.+..+... . ....+++.| ..++++.++.++.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 589999999999998877521 0 112468888 7788888887763
Q ss_pred ----------------EEEEecCCCcEEEEecc---C-------CcEEEEEEccCCC---EEEEEecCCcEEEEeCCCCe
Q 005646 419 ----------------VRIWAVLSCHVVDWVDI---R-------QIVTAVCYRPDGQ---GGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 419 ----------------V~iwd~~~~~~~~~~~~---~-------~~V~~v~~spdg~---~l~~gs~dg~i~iwd~~~~~ 469 (686)
|.-+|..+++.+-.... . .++....+..+|+ .+++++.+|.++++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 99999999998743332 1 2333334445776 68889999999999999998
Q ss_pred eee
Q 005646 470 LEL 472 (686)
Q Consensus 470 ~~~ 472 (686)
+..
T Consensus 336 ~l~ 338 (668)
T 1kv9_A 336 LIS 338 (668)
T ss_dssp EEE
T ss_pred Eec
Confidence 763
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0001 Score=72.24 Aligned_cols=153 Identities=9% Similarity=0.049 Sum_probs=101.3
Q ss_pred CeeEEEeeCCC-EEEEEECCC--cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE
Q 005646 356 EILDLSWSKNN-YLLSASIDK--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg--~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~ 432 (686)
....|.|+ ++ ++.+.+.+| .|+++|+.+++.+..+.-..........+.++.+++..-.++.+.+||..+.+++..
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 34789998 66 666777765 999999999999998885555544334442344444444689999999999999877
Q ss_pred eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
+.....- ..+++|++.|+.+..+++|.++|..+.+......+...+ .....++.+.|. ++...+..-.++.|.
T Consensus 123 i~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g---~~~~~lNELe~~--~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 123 FNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG---EELPELNELEWV--DGEIFANVWQTNKIV 195 (262)
T ss_dssp EECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT---EECCCEEEEEEE--TTEEEEEETTSSEEE
T ss_pred EECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC---ccccccceeEEE--CCEEEEEEccCCeEE
Confidence 7665432 344468888888777888999999987765543332211 111335567765 344444443566777
Q ss_pred EEeC
Q 005646 513 ILQG 516 (686)
Q Consensus 513 iwd~ 516 (686)
+.|.
T Consensus 196 vIDp 199 (262)
T 3nol_A 196 RIDP 199 (262)
T ss_dssp EECT
T ss_pred EEEC
Confidence 6664
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0002 Score=70.15 Aligned_cols=155 Identities=8% Similarity=0.015 Sum_probs=105.3
Q ss_pred CCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec
Q 005646 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~ 434 (686)
.....|.|+.+.++.+.+.++.|+++|+.+++.+..+ -..........+..+.+++..-.++.+.+||..+.+++..+.
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 3457888885337778888899999999999988877 444444432333245566666678999999999999987776
Q ss_pred cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iw 514 (686)
....-..++ +|++.|+++..+++|+++|..+.+......+.... .....++.+.|. ++...+..-.++.|.+.
T Consensus 134 ~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g---~~v~~lNeLe~~--dG~lyanvw~s~~I~vI 206 (268)
T 3nok_A 134 YSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRG---QPVELINELECA--NGVIYANIWHSSDVLEI 206 (268)
T ss_dssp CSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETT---EECCCEEEEEEE--TTEEEEEETTCSEEEEE
T ss_pred CCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCC---cccccccccEEe--CCEEEEEECCCCeEEEE
Confidence 654433444 67888888888999999999988766544332211 122346777776 34444444456777777
Q ss_pred eCC
Q 005646 515 QGP 517 (686)
Q Consensus 515 d~~ 517 (686)
|..
T Consensus 207 Dp~ 209 (268)
T 3nok_A 207 DPA 209 (268)
T ss_dssp CTT
T ss_pred eCC
Confidence 754
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.10 E-value=6.1e-05 Score=77.12 Aligned_cols=145 Identities=14% Similarity=0.004 Sum_probs=93.1
Q ss_pred CCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EE
Q 005646 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DW 432 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~ 432 (686)
..+.++...+++.|+.++ +.|..+| .+++.+..+. ....+.++...+ ++ .|..++.++.|..+|. ++..+ ..
T Consensus 177 ~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~-~g~~~~~~ 250 (330)
T 3hxj_A 177 AITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE-DG-TIYVTSLDGHLYAINP-DGTEKWRF 250 (330)
T ss_dssp CCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECT-TS-CEEEEETTTEEEEECT-TSCEEEEE
T ss_pred CceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECC-CC-eEEEEcCCCeEEEECC-CCCEeEEe
Confidence 345566666777566666 8899999 7777766665 456788888876 55 4566777888999985 44444 33
Q ss_pred eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
......+..+.+.++| .|.+++.+|.+..+|. +++...... . ....+.++...+ + ..|.+++.+|.++
T Consensus 251 ~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~--~------~~~~~~~~~~d~-~-g~l~~gt~~G~~~ 318 (330)
T 3hxj_A 251 KTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE--T------GSWIIATPVIDE-N-GTIYFGTRNGKFY 318 (330)
T ss_dssp ECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE--C------SSCCCSCCEECT-T-CCEEEECTTSCEE
T ss_pred eCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE--c------CCccccceEEcC-C-CEEEEEcCCCeEE
Confidence 3333334455666566 5667888889999996 444432211 1 123455666655 3 4677899999998
Q ss_pred EEeCC
Q 005646 513 ILQGP 517 (686)
Q Consensus 513 iwd~~ 517 (686)
+....
T Consensus 319 ~~~~~ 323 (330)
T 3hxj_A 319 ALFNL 323 (330)
T ss_dssp EEEC-
T ss_pred EEecc
Confidence 87643
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00069 Score=66.56 Aligned_cols=193 Identities=12% Similarity=0.175 Sum_probs=126.6
Q ss_pred EEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeC--CCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 348 HEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPH--SNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 348 ~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h--~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
+.+.+-...+..|+|+|++ +++....++.|...|.. ++.++.+.. ....-.|++.+ ++.++++.-.++.+.+++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVIS 97 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEE
Confidence 3455666789999999976 44456778899999998 888887762 35788899987 777666655678899998
Q ss_pred cCCCcE---EEEec-------cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEee--ccccCCCCCeEE
Q 005646 424 VLSCHV---VDWVD-------IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH--SKKKAPCKRITG 491 (686)
Q Consensus 424 ~~~~~~---~~~~~-------~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~I~~ 491 (686)
+..... +.... .......++|+|+++.|+++.......+|.+..-.......+... -........+.+
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~ 177 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSG 177 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCE
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCcee
Confidence 865432 22221 233468999999998888877766666666541000000111100 001123456899
Q ss_pred EEEeCCCCCeEEEEeCCCcEEEEeCC-----------------------cceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 492 FQFLPQDSSKVMVSCADSQVRILQGP-----------------------NVIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 492 l~fsp~~~~~l~~~s~D~~I~iwd~~-----------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
++++|..+.+++.......|.++|.. ..+++.++|+..++ ++-+.++++.-
T Consensus 178 l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 178 AEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 99999776677776667777777632 24778889975554 78877776654
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0012 Score=73.42 Aligned_cols=107 Identities=12% Similarity=-0.041 Sum_probs=71.6
Q ss_pred CCEEEEEEC------CCcEEEEECCCCeeeeEeeCCCCe---------------------------------------EE
Q 005646 365 NNYLLSASI------DKTVRLWRVGNDHCLRVFPHSNYV---------------------------------------TC 399 (686)
Q Consensus 365 ~~~L~s~s~------Dg~V~iWd~~~~~~~~~~~h~~~V---------------------------------------~~ 399 (686)
++.++.++. ++.|..+|..+++.+..+...... ..
T Consensus 160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~ 239 (571)
T 2ad6_A 160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW 239 (571)
T ss_dssp TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence 455555544 789999999999998877632211 23
Q ss_pred EEEeecCCCEEEEEEcC----------------CcEEEEecCCCcEEEEeccC-----------CcEEEEEEccCCC---
Q 005646 400 VHFNPVDDNYFISGSID----------------GKVRIWAVLSCHVVDWVDIR-----------QIVTAVCYRPDGQ--- 449 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~D----------------g~V~iwd~~~~~~~~~~~~~-----------~~V~~v~~spdg~--- 449 (686)
+++.| ....++.+..+ +.|..+|..+++.+-..... .++ -+...++|+
T Consensus 240 ~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~ 317 (571)
T 2ad6_A 240 YAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTP 317 (571)
T ss_dssp CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEE
T ss_pred EEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEE
Confidence 56777 55666666532 35999999999987433211 222 233335784
Q ss_pred EEEEEecCCcEEEEeCCCCeeeee
Q 005646 450 GGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 450 ~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
.++.++.+|.++++|..++++...
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~ 341 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEEeCCCcEEEEEECCCCCEEee
Confidence 577889999999999999887653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00085 Score=65.04 Aligned_cols=156 Identities=7% Similarity=-0.035 Sum_probs=103.3
Q ss_pred CCeeEEEeeCCCEEEEEECC--CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE
Q 005646 355 GEILDLSWSKNNYLLSASID--KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~D--g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~ 432 (686)
.....|.|+++.++.+.+.+ ..|+.+|+.+++.+..+.-..........+.++.+++..-.++.+.+||..+.+++..
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence 45679999873366666665 4899999999999998885544444444442445555555789999999999999877
Q ss_pred eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
+.....-..+ .+|++.|+++..++.|.++|..+.+.....++...+ .....++.+.+. ++...+..-.+..|.
T Consensus 101 i~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g---~~~~~lNeLe~~--~G~lyanvw~s~~I~ 173 (243)
T 3mbr_X 101 FRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG---RPLDNLNELEWV--NGELLANVWLTSRIA 173 (243)
T ss_dssp EECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETT---EECCCEEEEEEE--TTEEEEEETTTTEEE
T ss_pred EeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC---cccccceeeEEe--CCEEEEEECCCCeEE
Confidence 7665543344 467888888888999999999987765544332211 112335666665 334443333566666
Q ss_pred EEeCC
Q 005646 513 ILQGP 517 (686)
Q Consensus 513 iwd~~ 517 (686)
+.|..
T Consensus 174 vIDp~ 178 (243)
T 3mbr_X 174 RIDPA 178 (243)
T ss_dssp EECTT
T ss_pred EEECC
Confidence 66643
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0084 Score=69.57 Aligned_cols=183 Identities=14% Similarity=0.124 Sum_probs=119.2
Q ss_pred CCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee---------CCCCeEEEEEeecCCCEEEEEEcCCcEEEEec
Q 005646 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP---------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (686)
Q Consensus 354 ~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~---------h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~ 424 (686)
...|.++...++|.|..|+.++-|..|+..+++...... ....|.++...+ ++++|..|+.++-|.+||.
T Consensus 356 ~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp CSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEET
T ss_pred CCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeC
Confidence 356889988888888889998889999988776543321 136799999887 7775777888788999999
Q ss_pred CCCcEEEEec-----cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 425 LSCHVVDWVD-----IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 425 ~~~~~~~~~~-----~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
.+++...+.. ....|.++...++|++.+ |+. +.+.+||..+++....... ......+...|.++...+ ++
T Consensus 435 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~i~~d~-~g 509 (795)
T 4a2l_A 435 NSGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTL-SALVRFNPEQRSFTTIEKE--KDGTPVVSKQITTLFRDS-HK 509 (795)
T ss_dssp TTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EES-SCEEEEETTTTEEEECCBC--TTCCBCCCCCEEEEEECT-TC
T ss_pred CCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-Eec-CceeEEeCCCCeEEEcccc--ccccccCCceEEEEEECC-CC
Confidence 9887665542 235689999988887555 444 4589999887765322110 000011235688888776 44
Q ss_pred CeEEEEeCCCcEEEEeCCc--------------------ceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 500 SKVMVSCADSQVRILQGPN--------------------VIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 500 ~~l~~~s~D~~I~iwd~~~--------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.+. +++. +.|..|+..+ .+...++|++.++. .. -|..||..++
T Consensus 510 ~lW-igt~-~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 510 RLW-IGGE-EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDK 572 (795)
T ss_dssp CEE-EEES-SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTT
T ss_pred CEE-EEeC-CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCC
Confidence 444 4444 4566666421 12233466655543 33 5788887654
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0013 Score=73.18 Aligned_cols=99 Identities=9% Similarity=-0.055 Sum_probs=69.2
Q ss_pred CCCcEEEEECCCCeeeeEeeCCCCe---------------------------------------EEEEEeecCCCEEEEE
Q 005646 373 IDKTVRLWRVGNDHCLRVFPHSNYV---------------------------------------TCVHFNPVDDNYFISG 413 (686)
Q Consensus 373 ~Dg~V~iWd~~~~~~~~~~~h~~~V---------------------------------------~~v~fsp~~~~~l~sg 413 (686)
.++.|+-+|..+++.+..+...... ..+++.+ ..++++.+
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g 258 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFG 258 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEe
Confidence 3789999999999998887632211 1356667 66777777
Q ss_pred EcC----------------CcEEEEecCCCcEEEEeccC-----------CcEEEEEEc-cCC---CEEEEEecCCcEEE
Q 005646 414 SID----------------GKVRIWAVLSCHVVDWVDIR-----------QIVTAVCYR-PDG---QGGIVGSMMGDCRF 462 (686)
Q Consensus 414 s~D----------------g~V~iwd~~~~~~~~~~~~~-----------~~V~~v~~s-pdg---~~l~~gs~dg~i~i 462 (686)
..+ +.|.-+|..+++++-..... .++. +... .+| ..++.++.+|.+++
T Consensus 259 ~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~ 337 (599)
T 1w6s_A 259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYT 337 (599)
T ss_dssp CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEE
T ss_pred CCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEE
Confidence 665 37999999999987333221 1221 2232 577 46777899999999
Q ss_pred EeCCCCeeeee
Q 005646 463 YNVSDNHLELD 473 (686)
Q Consensus 463 wd~~~~~~~~~ 473 (686)
+|..+++++..
T Consensus 338 lD~~tG~~lw~ 348 (599)
T 1w6s_A 338 LDRTDGALVSA 348 (599)
T ss_dssp EETTTCCEEEE
T ss_pred EECCCCCEeec
Confidence 99999987654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0032 Score=63.78 Aligned_cols=151 Identities=13% Similarity=0.072 Sum_probs=87.9
Q ss_pred CeeEEEeeCCC-EEEEEEC-CC-cEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--
Q 005646 356 EILDLSWSKNN-YLLSASI-DK-TVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-- 428 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~-Dg-~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-- 428 (686)
....+++.+++ ++++... ++ .|..+|..+++...... .......++..+ ++..+++-..++.|..+|..++.
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEe
Confidence 46789999998 4444333 22 46667777776544333 223345555554 44445554468899999987653
Q ss_pred EEEEec---------cCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCCC-CeeeeeeeEEeeccccCCCCCeEEEEEeCC
Q 005646 429 VVDWVD---------IRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (686)
Q Consensus 429 ~~~~~~---------~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~ 497 (686)
+..... .-.....+ +|+++.|+++ ...+.|..|++.. +.+... ..... .....++++.+
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~-~~~~~------~~~P~gi~vd~- 221 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP-EIFVE------QTNIDDFAFDV- 221 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC-EEEEE------SCCCSSEEEBT-
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc-EEEec------cCCCCCeEECC-
Confidence 221110 11234555 8888766555 4578899999875 332111 11111 12356788888
Q ss_pred CCCeEEEEeCCCcEEEEeCC
Q 005646 498 DSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 498 ~~~~l~~~s~D~~I~iwd~~ 517 (686)
++.++++....+.|.+++..
T Consensus 222 dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 222 EGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TCCEEEECBTTCCEEEECTT
T ss_pred CCCEEEEeCCCCeEEEECCC
Confidence 56666666667788888754
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.007 Score=70.20 Aligned_cols=183 Identities=9% Similarity=0.108 Sum_probs=120.6
Q ss_pred CCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-------CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC
Q 005646 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 354 ~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-------h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~ 426 (686)
...|.++...++|.|..|+.++-|..|+..+........ ....|.++...+ +++ |..|+.++-|..||..+
T Consensus 309 ~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~~~~ 386 (795)
T 4a2l_A 309 QRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGGLNLYNPIT 386 (795)
T ss_dssp SSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSCEEEECTTT
T ss_pred CCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCCeEEEcCCC
Confidence 357899999888888889998899999876554322111 245699999876 555 55678787899999988
Q ss_pred CcEEEEec---------cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC
Q 005646 427 CHVVDWVD---------IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (686)
Q Consensus 427 ~~~~~~~~---------~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~ 497 (686)
++...... ....|.+++..++|+.|.+|+.++-+.+||..+++...... .....+...|.++...+
T Consensus 387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~----~~~~l~~~~v~~i~~d~- 461 (795)
T 4a2l_A 387 QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ----RNSQLVNENVYAILPDG- 461 (795)
T ss_dssp CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT----TTSCCSCSCEEEEEECS-
T ss_pred CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec----CCCCcCCCeeEEEEECC-
Confidence 77654431 13568999999999857778887889999988765432110 00112345688888776
Q ss_pred CCCeEEEEeCCCcEEEEeCCcc---------------------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 498 DSSKVMVSCADSQVRILQGPNV---------------------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 498 ~~~~l~~~s~D~~I~iwd~~~~---------------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++. |.+++. +.|.+|+..+. +...++|++.+.. . +-|+.|+..++.
T Consensus 462 ~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 462 EGN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLD 528 (795)
T ss_dssp SSC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTE
T ss_pred CCC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCe
Confidence 444 444444 45777775431 2223456555543 4 458888876643
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00032 Score=79.70 Aligned_cols=254 Identities=13% Similarity=0.069 Sum_probs=138.7
Q ss_pred eeec-CCCccceeeccc-----------eEEEEEcCCccccccccccCcee-cccCCceEEEEEeeCCCEEEEEeC-CCc
Q 005646 208 RVRL-NEEDAMFCSKVQ-----------RVKVYHCKKRSKELSALYKGQEI-QAHDGSILTMKFSPDGQYLASAGD-DGV 273 (686)
Q Consensus 208 ~~s~-~~~~l~~g~~d~-----------~v~vw~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~-Dg~ 273 (686)
.+.+ ++..++.|+.+. .+.+||........ + ..+ ..+.....++++..+|++++.||. +..
T Consensus 192 av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~--~---~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~ 266 (656)
T 1k3i_A 192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD--R---TVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK 266 (656)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC--C---EEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe--C---cccCCCCCCccccccCCCCCCEEEeCCCCCCc
Confidence 4444 666666665432 57777765543211 1 111 123333445778889999999984 457
Q ss_pred EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccC
Q 005646 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (686)
Q Consensus 274 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 353 (686)
+.+||..+.+-...-. +. .
T Consensus 267 v~~yd~~t~~W~~~~~------------------------------------------------------------~~-~ 285 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPD------------------------------------------------------------MQ-V 285 (656)
T ss_dssp EEEEEGGGTEEEECCC------------------------------------------------------------CS-S
T ss_pred eEEecCcCCceeECCC------------------------------------------------------------CC-c
Confidence 9999987764211000 00 0
Q ss_pred CCCeeEEEeeCCC-EEEEEE-CC-----CcEEEEECCCCeeeeE-----eeCCCCeEEEEEeecCCCEEEEEEcCC----
Q 005646 354 SGEILDLSWSKNN-YLLSAS-ID-----KTVRLWRVGNDHCLRV-----FPHSNYVTCVHFNPVDDNYFISGSIDG---- 417 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L~s~s-~D-----g~V~iWd~~~~~~~~~-----~~h~~~V~~v~fsp~~~~~l~sgs~Dg---- 417 (686)
...-.+++..+++ +++.|+ .+ ..+.+||..+.+.... ......-....+.. ++..++.|+.+|
T Consensus 286 ~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg~~g~~~~ 364 (656)
T 1k3i_A 286 ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKKGSVFQ 364 (656)
T ss_dssp CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGGGCEEE
T ss_pred cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec-CCceEEEECCCCcEEE
Confidence 0111234455666 666676 34 5799999988875443 11000000011112 455555665544
Q ss_pred -----cEEEEecCCCcEEEEeccC----------CcEEEEEEcc-CCCEEEEEecCC-----------cEEEEeCCCCee
Q 005646 418 -----KVRIWAVLSCHVVDWVDIR----------QIVTAVCYRP-DGQGGIVGSMMG-----------DCRFYNVSDNHL 470 (686)
Q Consensus 418 -----~V~iwd~~~~~~~~~~~~~----------~~V~~v~~sp-dg~~l~~gs~dg-----------~i~iwd~~~~~~ 470 (686)
.+..||..+..-....... ..-.++.|.. +++++++|+.++ .+.+||..++..
T Consensus 365 ~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W 444 (656)
T 1k3i_A 365 AGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN 444 (656)
T ss_dssp CCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE
T ss_pred ecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe
Confidence 4678888776533222111 1234555544 788888887543 688888877654
Q ss_pred eeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC-----------CcEEEEeCCcc-----------------eeE
Q 005646 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----------SQVRILQGPNV-----------------IGK 522 (686)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D-----------~~I~iwd~~~~-----------------~~~ 522 (686)
.... .........-.+....| +++++++++.+ ..+.+||..+. ...
T Consensus 445 ~~~~-----~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~l 518 (656)
T 1k3i_A 445 TVFA-----SNGLYFARTFHTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLL 518 (656)
T ss_dssp EEEC-----TTCCSSCCBSCEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEE
T ss_pred eEEc-----cCCCCCCcccCCeEECC-CCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhc
Confidence 3211 00011111223455667 77888888864 46889985431 224
Q ss_pred cCCCCEEEEEeC
Q 005646 523 YKDGKHIVSAGE 534 (686)
Q Consensus 523 ~~dg~~l~sgs~ 534 (686)
.+||+.++.|+.
T Consensus 519 l~dg~v~v~GG~ 530 (656)
T 1k3i_A 519 LPDGRVFNGGGG 530 (656)
T ss_dssp CTTSCEEEEECC
T ss_pred CCCcEEEecCCC
Confidence 468898888885
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0023 Score=64.84 Aligned_cols=186 Identities=9% Similarity=-0.041 Sum_probs=115.9
Q ss_pred CCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCC--cEEEEecCCCcEEE
Q 005646 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG--KVRIWAVLSCHVVD 431 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg--~V~iwd~~~~~~~~ 431 (686)
.....++|++++ ++++-..++.|..||.... ....+.....+..+++.| +++++++..... .|..+|..++++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 456789999988 5555557899999998754 444445556789999999 888766654432 47777878887654
Q ss_pred Eecc--CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE-ee-ccccCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 432 WVDI--RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC-VH-SKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 432 ~~~~--~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~-~~-~~~~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
.... ......++..+++..+++-..+|.|+++|...++........ +. ...........++ +|++..++++-..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 4432 223455666666655555556899999998764321100000 00 0011122345666 7743345566667
Q ss_pred CCcEEEEeCC-----------------cceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 508 DSQVRILQGP-----------------NVIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 508 D~~I~iwd~~-----------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
.++|..++.. ..+++.++|+++++....+.|.+++..
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 7888888753 235566688877777677888888864
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00016 Score=82.25 Aligned_cols=190 Identities=11% Similarity=0.051 Sum_probs=110.2
Q ss_pred CCeeEEEeeCCC-EEEEEE-CCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEE-cC-----CcEEEEec
Q 005646 355 GEILDLSWSKNN-YLLSAS-IDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGS-ID-----GKVRIWAV 424 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s-~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs-~D-----g~V~iwd~ 424 (686)
....++++..++ +++.|+ .+..+.+||..+.+....-. ....-.+++..+ ++++++.|+ .+ ..+.+||.
T Consensus 243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCC
Confidence 334456777778 777776 45689999998886554322 222223455666 889999998 44 56999999
Q ss_pred CCCcEEEEec-----cCCcEEEEEEccCCCEEEEEecCC---------cEEEEeCCCCeeeeeeeEEeeccc---cCCCC
Q 005646 425 LSCHVVDWVD-----IRQIVTAVCYRPDGQGGIVGSMMG---------DCRFYNVSDNHLELDAEICVHSKK---KAPCK 487 (686)
Q Consensus 425 ~~~~~~~~~~-----~~~~V~~v~~spdg~~l~~gs~dg---------~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~ 487 (686)
.+.+-..... ....-....+..+++.++.|+.+| .+..||..++....... ..... .....
T Consensus 322 ~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~--~~~~~~~~~~~~~ 399 (656)
T 1k3i_A 322 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAG--KRQSNRGVAPDAM 399 (656)
T ss_dssp TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEE--ECEETTEECCCCB
T ss_pred CCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCC--ccccccccCCCCC
Confidence 8876443311 110000112334666666665554 46788887765432111 11100 00111
Q ss_pred CeEEEEEeCCCCCeEEEEeCCC-----------cEEEEeCCcc------------------eeEcCCCCEEEEEeCC---
Q 005646 488 RITGFQFLPQDSSKVMVSCADS-----------QVRILQGPNV------------------IGKYKDGKHIVSAGED--- 535 (686)
Q Consensus 488 ~I~~l~fsp~~~~~l~~~s~D~-----------~I~iwd~~~~------------------~~~~~dg~~l~sgs~D--- 535 (686)
.-.++.|...+++++++|+.++ .|.+||..+. ....++++.++.|+.+
T Consensus 400 ~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~ 479 (656)
T 1k3i_A 400 CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI 479 (656)
T ss_dssp TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred CCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCc
Confidence 2344555554677888887543 5777764321 2344699999999865
Q ss_pred --------CcEEEEeCCCCC
Q 005646 536 --------SNVYMWNCIGHE 547 (686)
Q Consensus 536 --------g~V~iWd~~~~~ 547 (686)
..+.+||..+.+
T Consensus 480 ~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 480 PFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp TTCCCSBCCCCEEEEGGGTE
T ss_pred CcCCCCcccceEEEcCCCCc
Confidence 468899987643
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0012 Score=70.54 Aligned_cols=112 Identities=6% Similarity=0.092 Sum_probs=71.7
Q ss_pred CCeeEEEeeCCC-EEEEEECC-C----cEEEEECCCCeee--eEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC
Q 005646 355 GEILDLSWSKNN-YLLSASID-K----TVRLWRVGNDHCL--RVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s~D-g----~V~iWd~~~~~~~--~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~ 426 (686)
.....++|++++ +|+.+... + .+.+.+. .+... ..+........++++|.++.++++-..++.|+.++..+
T Consensus 179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence 456789999988 56666542 1 2333333 22221 23333344567889985566666666778999999987
Q ss_pred CcEEEEecc--CCcEEEEEEccCCCEEEE-EecCCcEEEEeCCC
Q 005646 427 CHVVDWVDI--RQIVTAVCYRPDGQGGIV-GSMMGDCRFYNVSD 467 (686)
Q Consensus 427 ~~~~~~~~~--~~~V~~v~~spdg~~l~~-gs~dg~i~iwd~~~ 467 (686)
+....+... ......++|+|+|++|++ -...+.|+.++...
T Consensus 258 ~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 258 QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 765333322 245788999999995554 45678899988653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0035 Score=71.13 Aligned_cols=152 Identities=9% Similarity=0.079 Sum_probs=100.0
Q ss_pred eeEEEeeCCC-EEEEEECCC-------------------cEEEEECCCCeeeeEee---CC-------CCeEEEEEeecC
Q 005646 357 ILDLSWSKNN-YLLSASIDK-------------------TVRLWRVGNDHCLRVFP---HS-------NYVTCVHFNPVD 406 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg-------------------~V~iWd~~~~~~~~~~~---h~-------~~V~~v~fsp~~ 406 (686)
...+++.+.. +++.++.++ .|..+|..+++.+..+. |. .++....+.. +
T Consensus 232 w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~ 310 (668)
T 1kv9_A 232 WDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-D 310 (668)
T ss_dssp CSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-T
T ss_pred ccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-C
Confidence 3456777765 777776665 49999999999998887 22 2333333333 5
Q ss_pred CC---EEEEEEcCCcEEEEecCCCcEEEEeccCC-------------cE------------------------EEEEEcc
Q 005646 407 DN---YFISGSIDGKVRIWAVLSCHVVDWVDIRQ-------------IV------------------------TAVCYRP 446 (686)
Q Consensus 407 ~~---~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~-------------~V------------------------~~v~~sp 446 (686)
++ .++.++.+|.|+++|..+++++....... ++ ..++++|
T Consensus 311 G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp 390 (668)
T 1kv9_A 311 GKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP 390 (668)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET
T ss_pred CcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC
Confidence 54 68999999999999999999873221110 00 1267888
Q ss_pred CCCEEEEEe------------------------------------cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeE
Q 005646 447 DGQGGIVGS------------------------------------MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (686)
Q Consensus 447 dg~~l~~gs------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~ 490 (686)
+...+++.. .+|.|..||+.+++........ ....
T Consensus 391 ~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~---------~~~~ 461 (668)
T 1kv9_A 391 GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP---------THWN 461 (668)
T ss_dssp TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES---------SSCC
T ss_pred CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC---------CCCc
Confidence 777666521 2378999999998876543321 1222
Q ss_pred EEEEeCCCCCeEEEEeCCCcEEEEeCCcc
Q 005646 491 GFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (686)
Q Consensus 491 ~l~fsp~~~~~l~~~s~D~~I~iwd~~~~ 519 (686)
...+.. .+.++++++.|+.++.||..+.
T Consensus 462 ~~~~~t-~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 462 GGTLST-AGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp CCEEEE-TTTEEEEECTTSEEEEEETTTC
T ss_pred CceeEe-CCCEEEEECCcccchhhhhhcC
Confidence 233334 4578888899999999997653
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0018 Score=69.35 Aligned_cols=161 Identities=11% Similarity=0.090 Sum_probs=90.3
Q ss_pred CCeeEEEeeCCCEEEEEECC----Cc-EEEEECCCCee-eeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 355 GEILDLSWSKNNYLLSASID----KT-VRLWRVGNDHC-LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~D----g~-V~iWd~~~~~~-~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
.....+++++++.|+.+... .. +...+...+.. ...+..-.....++++|.++.++++-..++.|+.+|..++.
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~ 261 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT 261 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe
Confidence 45678999998844444332 11 22233221110 11222334456788888556666666677899999998776
Q ss_pred E-EEEec--cCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCCC--CeeeeeeeEEee-cc--------ccCCCCCeEEEE
Q 005646 429 V-VDWVD--IRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSD--NHLELDAEICVH-SK--------KKAPCKRITGFQ 493 (686)
Q Consensus 429 ~-~~~~~--~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~~--~~~~~~~~~~~~-~~--------~~~~~~~I~~l~ 493 (686)
. ..+.. .......++|+|+|+.|+++ ...+.|+.++... +.+.....+... .. .........+++
T Consensus 262 ~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~gia 341 (433)
T 4hw6_A 262 LTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGI 341 (433)
T ss_dssp EEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEE
T ss_pred EEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEE
Confidence 6 22222 12234579999999955554 4567899988653 322111111110 00 011234467788
Q ss_pred E---------eCCCCCeEEEEeCCCcEEEEeC
Q 005646 494 F---------LPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 494 f---------sp~~~~~l~~~s~D~~I~iwd~ 516 (686)
+ .+ ++.++++-...++|+.++.
T Consensus 342 v~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 342 FVKNEAYAGEED-EYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp EEECGGGTTSSC-CEEEEEEETTTTEEEEECT
T ss_pred EEccccccccCC-CCcEEEEECCCCEEEEECC
Confidence 8 34 5566666667788888874
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0079 Score=58.96 Aligned_cols=204 Identities=8% Similarity=0.122 Sum_probs=123.0
Q ss_pred ceecccCCceEEEEEeeCCCEEE-EEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLA-SAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
+.+.+-...+..|+|+|++..|+ +...++.|...|.. ++.+..+..
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-------------------------------- 66 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-------------------------------- 66 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC--------------------------------
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec--------------------------------
Confidence 34556667899999999866555 46667777777775 553333321
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCee---eeEe-------
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHC---LRVF------- 391 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~---~~~~------- 391 (686)
.+ ....-.+++.+++ ++++.-.++.+.++++..... +...
T Consensus 67 ----------------------------~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~ 117 (255)
T 3qqz_A 67 ----------------------------DF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQES 117 (255)
T ss_dssp ----------------------------SS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSC
T ss_pred ----------------------------CC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccc
Confidence 11 1456678888888 445544567888888765442 1222
Q ss_pred eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC---CcEEEEec--------cCCcEEEEEEccC-CCEEEEEecCCc
Q 005646 392 PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS---CHVVDWVD--------IRQIVTAVCYRPD-GQGGIVGSMMGD 459 (686)
Q Consensus 392 ~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~---~~~~~~~~--------~~~~V~~v~~spd-g~~l~~gs~dg~ 459 (686)
..+.....|+|+| .++.|+++.......||.+.. ...+.... .-..+.+++|+|. +++++.......
T Consensus 118 ~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~ 196 (255)
T 3qqz_A 118 PTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRA 196 (255)
T ss_dssp CCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTE
T ss_pred cccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCe
Confidence 1345579999999 676666666655556665541 11111111 1234789999994 556666777888
Q ss_pred EEEEeCCCCeeeeeeeEEeeccc---cCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 460 CRFYNVSDNHLELDAEICVHSKK---KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 460 i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
+.++|.... .... +.+.... ......--+|+|.+ +++ |.+.+..+.++++.
T Consensus 197 L~~~d~~g~-~~~~--~~L~~g~~~l~~~~~qpEGia~d~-~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 197 LQEVTLVGE-VIGE--MSLTKGSRGLSHNIKQAEGVAMDA-SGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp EEEECTTCC-EEEE--EECSTTGGGCSSCCCSEEEEEECT-TCC-EEEEETTTEEEEEE
T ss_pred EEEEcCCCC-EEEE--EEcCCccCCcccccCCCCeeEECC-CCC-EEEEcCCceEEEEE
Confidence 999998754 3221 1222110 11224578999999 666 55557767666664
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.015 Score=60.08 Aligned_cols=155 Identities=7% Similarity=-0.029 Sum_probs=102.6
Q ss_pred CCeeEEEeeCCC-EE-EEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE
Q 005646 355 GEILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L-~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~ 431 (686)
.....++|.+.+ .| ++-...+.|..+++........+. .......+++.+.+++++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 347899999754 44 455567889999988765444443 334567899998456666666677899999987654333
Q ss_pred Ee-ccCCcEEEEEEccCCCEEEEEe-cC-CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 432 WV-DIRQIVTAVCYRPDGQGGIVGS-MM-GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 432 ~~-~~~~~V~~v~~spdg~~l~~gs-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
.. ..-.....++++|.+..|+... .. +.|..+++........ ........++|+++|.++.+.++-...
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~--------~~~~~~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII--------ADTHLFWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES--------CCSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE--------EECCCCCcceEEEeCCCCEEEEEECCC
Confidence 33 2335578999999666555544 34 7788888875432210 011234578999999666666666677
Q ss_pred CcEEEEeCC
Q 005646 509 SQVRILQGP 517 (686)
Q Consensus 509 ~~I~iwd~~ 517 (686)
+.|..++..
T Consensus 225 ~~I~~~~~d 233 (349)
T 3v64_C 225 HVIERANLD 233 (349)
T ss_dssp TEEEEEETT
T ss_pred CEEEEEeCC
Confidence 888888754
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.017 Score=61.63 Aligned_cols=157 Identities=8% Similarity=-0.011 Sum_probs=86.2
Q ss_pred eeEEEeeC-CCE-EEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCC-EEEEEEcCCcEEEEecCC--CcE
Q 005646 357 ILDLSWSK-NNY-LLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDN-YFISGSIDGKVRIWAVLS--CHV 429 (686)
Q Consensus 357 V~~l~~s~-~~~-L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~-~l~sgs~Dg~V~iwd~~~--~~~ 429 (686)
...++++| ++. +++-..++.|..++...+.....+. .......|+|+| +++ ++++-...+.|..++... +..
T Consensus 228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p-dG~~lyv~d~~~~~I~~~~~d~~~~~~ 306 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP-SGNYAYIVVVNQHYILRSDYDWKTKRL 306 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC-CCCEEEEEECCCCEEEEEeCCcccccc
Confidence 46788899 664 4455567889999998776533333 234578999999 888 455555678899987653 221
Q ss_pred ---EEEecc---------------CCcEE-EEEEc--------cCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE---ee
Q 005646 430 ---VDWVDI---------------RQIVT-AVCYR--------PDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC---VH 479 (686)
Q Consensus 430 ---~~~~~~---------------~~~V~-~v~~s--------pdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~---~~ 479 (686)
..+... -.... .++.. ++|.++++-...+.|+.++. ++.+....-.. ..
T Consensus 307 ~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~ 385 (430)
T 3tc9_A 307 TTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTS 385 (430)
T ss_dssp CCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSS
T ss_pred cceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCC
Confidence 111111 01123 45553 34655555556677888884 34332211000 00
Q ss_pred c------cccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 480 S------KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 480 ~------~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
+ ..........+|++.|+++.++++-..+.+|+.++
T Consensus 386 G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 427 (430)
T 3tc9_A 386 GYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG 427 (430)
T ss_dssp SCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred cccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence 0 00111235677888774344444444555555554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.021 Score=58.04 Aligned_cols=155 Identities=7% Similarity=-0.035 Sum_probs=99.2
Q ss_pred CCeeEEEeeCCC--EEEEEECCCcEEEEECCC----CeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC
Q 005646 355 GEILDLSWSKNN--YLLSASIDKTVRLWRVGN----DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (686)
Q Consensus 355 ~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~----~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~ 427 (686)
.....++|++.+ .+++-...+.|..+++.. ......+. .-.....+++.+.+++++++-...+.|.++++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 456789999865 444555678999999876 22222232 22456889998745556666667889999998766
Q ss_pred cEEEEec-cCCcEEEEEEccCCCEEEEEecC--CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 428 HVVDWVD-IRQIVTAVCYRPDGQGGIVGSMM--GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 428 ~~~~~~~-~~~~V~~v~~spdg~~l~~gs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
....+.. .-.....++++|.+..|+.+... +.|..+++....... +. ........++++.|.++.++++
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~-----~~---~~~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-----LV---TENIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE-----EE---CSSCSCEEEEEEETTTTEEEEE
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE-----EE---ECCCCCceEEEEeccCCEEEEE
Confidence 5443333 33567899999976666555443 688888886543211 10 1123458899999955556666
Q ss_pred EeCCCcEEEEeCC
Q 005646 505 SCADSQVRILQGP 517 (686)
Q Consensus 505 ~s~D~~I~iwd~~ 517 (686)
-...+.|..+|..
T Consensus 182 D~~~~~I~~~d~d 194 (316)
T 1ijq_A 182 DSKLHSISSIDVN 194 (316)
T ss_dssp ETTTTEEEEEETT
T ss_pred ECCCCeEEEEecC
Confidence 6677888888753
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0046 Score=68.66 Aligned_cols=57 Identities=7% Similarity=-0.060 Sum_probs=40.3
Q ss_pred cEEEEECCCCeeeeEee---CCC----CeEE---EEEeecCC---CEEEEEEcCCcEEEEecCCCcEEEEe
Q 005646 376 TVRLWRVGNDHCLRVFP---HSN----YVTC---VHFNPVDD---NYFISGSIDGKVRIWAVLSCHVVDWV 433 (686)
Q Consensus 376 ~V~iWd~~~~~~~~~~~---h~~----~V~~---v~fsp~~~---~~l~sgs~Dg~V~iwd~~~~~~~~~~ 433 (686)
.|..+|..+++.+..++ |.. .+.. +...+ ++ ..++.++.+|.|.++|..+++++...
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 69999999999988876 211 1111 22223 56 36778899999999999999887433
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.006 Score=67.88 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=49.9
Q ss_pred EEEEeecCCCEEEEEEc--------------------C----CcEEEEecCCCcEEEEecc---C--------CcEEEEE
Q 005646 399 CVHFNPVDDNYFISGSI--------------------D----GKVRIWAVLSCHVVDWVDI---R--------QIVTAVC 443 (686)
Q Consensus 399 ~v~fsp~~~~~l~sgs~--------------------D----g~V~iwd~~~~~~~~~~~~---~--------~~V~~v~ 443 (686)
.+++.| ..++++.+.. | +.|.-+|..+++.+-.... . .++. +.
T Consensus 250 ~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~ 327 (582)
T 1flg_A 250 SASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FD 327 (582)
T ss_dssp CCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EE
T ss_pred CceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Ee
Confidence 356677 5667776663 2 5899999999998743321 1 1221 22
Q ss_pred Ec-cCCC---EEEEEecCCcEEEEeCCCCeeeee
Q 005646 444 YR-PDGQ---GGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 444 ~s-pdg~---~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
.. .+|+ .++.++.+|.++++|..++++...
T Consensus 328 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 361 (582)
T 1flg_A 328 YKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNA 361 (582)
T ss_dssp EECSSSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred eecCCCCEEEEEEEECCCceEEEEECCCCCEecc
Confidence 22 5774 788899999999999999887653
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0074 Score=63.44 Aligned_cols=155 Identities=7% Similarity=-0.038 Sum_probs=102.4
Q ss_pred CCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE
Q 005646 355 GEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (686)
Q Consensus 355 ~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~ 431 (686)
.....++|.+.+ ++++-...+.|..+++........+. .......+++.+..++++++-...+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 457889999754 44455567889999988765444443 334567899998456666666667889998887654333
Q ss_pred Eec-cCCcEEEEEEccCCCEEEEEec-C-CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 432 WVD-IRQIVTAVCYRPDGQGGIVGSM-M-GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 432 ~~~-~~~~V~~v~~spdg~~l~~gs~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
... .-.....++++|.+..|+.... . +.|..+++........ . .......++|+++|.++.++++-...
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~----~----~~~~~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII----A----DTHLFWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE----E----CSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE----E----ECCCCCeeeEEEeCCCCEEEEEECCC
Confidence 332 2356789999997766665543 3 6788888865432210 1 11224578999998566666666677
Q ss_pred CcEEEEeCC
Q 005646 509 SQVRILQGP 517 (686)
Q Consensus 509 ~~I~iwd~~ 517 (686)
+.|..++..
T Consensus 268 ~~I~~~d~d 276 (386)
T 3v65_B 268 HVIERANLD 276 (386)
T ss_dssp TEEEEECTT
T ss_pred CEEEEEeCC
Confidence 888888753
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0014 Score=75.68 Aligned_cols=108 Identities=11% Similarity=0.070 Sum_probs=65.9
Q ss_pred eEEEeeCCC-EEEEEECC-----CcEEEEECCCCee--eeEee--CCCCeEEEEEeecCCCEEEEEEc---CCcEEEEec
Q 005646 358 LDLSWSKNN-YLLSASID-----KTVRLWRVGNDHC--LRVFP--HSNYVTCVHFNPVDDNYFISGSI---DGKVRIWAV 424 (686)
Q Consensus 358 ~~l~~s~~~-~L~s~s~D-----g~V~iWd~~~~~~--~~~~~--h~~~V~~v~fsp~~~~~l~sgs~---Dg~V~iwd~ 424 (686)
..++|+|++ .|+....| ..|.++++.+++. ...+. .......+.|+| ++++|+..+. ...|+++|+
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~ 302 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDL 302 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEES
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEEC
Confidence 468899998 66655554 3688888887642 23332 345677899999 9988877663 346888999
Q ss_pred CCC--cE--EEEec-cCCcEEEEEEccCCCEEEEE-ecC--C--cEEEEeCCC
Q 005646 425 LSC--HV--VDWVD-IRQIVTAVCYRPDGQGGIVG-SMM--G--DCRFYNVSD 467 (686)
Q Consensus 425 ~~~--~~--~~~~~-~~~~V~~v~~spdg~~l~~g-s~d--g--~i~iwd~~~ 467 (686)
.++ .. ..+.. .......+.|+. |+.|+.. ..+ + .|..+|+.+
T Consensus 303 ~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 303 RKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp SSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 875 23 32222 233445555443 5555444 333 2 566667654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.022 Score=59.76 Aligned_cols=112 Identities=6% Similarity=-0.067 Sum_probs=72.3
Q ss_pred eeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcC-CcEEEEecCCCcEEEE
Q 005646 357 ILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHVVDW 432 (686)
Q Consensus 357 V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~~~~~ 432 (686)
...+++.+.+ ++++-...+.|.+.++........+. .-.....|++.|..+.++++-... +.|..+++.......+
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~ 240 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII 240 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE
Confidence 3567777644 44555567788888887554333333 336789999999444455554444 7888888875544333
Q ss_pred ec-cCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCCCC
Q 005646 433 VD-IRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDN 468 (686)
Q Consensus 433 ~~-~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~~~ 468 (686)
.. .-.....|+++|++..|+.+ +..+.|..+|+...
T Consensus 241 ~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 241 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 32 23457899999876666655 44677999998653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.044 Score=56.54 Aligned_cols=113 Identities=6% Similarity=-0.064 Sum_probs=74.3
Q ss_pred CeeEEEeeCC-C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcC-CcEEEEecCCCcEEE
Q 005646 356 EILDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHVVD 431 (686)
Q Consensus 356 ~V~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~~~~ 431 (686)
....+++.+. + ++++-...+.|.+.++........+. .-.....|+++|.++.++++-... +.|..+++.......
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~ 196 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI 196 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE
Confidence 3467888764 4 44555567889999987654333333 345679999999445555555555 788888887544333
Q ss_pred Eec-cCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCC
Q 005646 432 WVD-IRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDN 468 (686)
Q Consensus 432 ~~~-~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~ 468 (686)
+.. .-.....|+++|++..|+.+. ..+.|..+|+...
T Consensus 197 ~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 197 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 322 234578999998776666554 4677999998753
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.019 Score=58.59 Aligned_cols=111 Identities=12% Similarity=0.182 Sum_probs=81.3
Q ss_pred CCeeEEEe--eCC-C--EEEEEECCCcEEEEECC-------CCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEE
Q 005646 355 GEILDLSW--SKN-N--YLLSASIDKTVRLWRVG-------NDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (686)
Q Consensus 355 ~~V~~l~~--s~~-~--~L~s~s~Dg~V~iWd~~-------~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iw 422 (686)
..+..+++ +|. + +++....++.+..|++. +.+.++.|.....+..++..+ ....|+.+-.+.-|..+
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~~ 206 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD-EYGRLYIAEEDEAIWKF 206 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET-TTTEEEEEETTTEEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC-CCCeEEEecccceEEEE
Confidence 34455555 563 4 68888889999999982 346778888888899999998 78889999998777777
Q ss_pred ecC-----CCcEEEEecc---CCcEEEEEE--ccCCC-EEEEEe-cCCcEEEEeCC
Q 005646 423 AVL-----SCHVVDWVDI---RQIVTAVCY--RPDGQ-GGIVGS-MMGDCRFYNVS 466 (686)
Q Consensus 423 d~~-----~~~~~~~~~~---~~~V~~v~~--spdg~-~l~~gs-~dg~i~iwd~~ 466 (686)
+.. +++++..... ...+..|++ .++|+ +|++++ .+++..+||..
T Consensus 207 da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 207 SAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp ECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 755 3456655433 346788887 56666 666666 47789999996
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.57 E-value=0.11 Score=54.66 Aligned_cols=115 Identities=10% Similarity=-0.008 Sum_probs=77.1
Q ss_pred CCeeEEEeeC-CC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEc-CCcEEEEecCCCcEE
Q 005646 355 GEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLSCHVV 430 (686)
Q Consensus 355 ~~V~~l~~s~-~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~~~~~~~ 430 (686)
.....|++.+ .+ ++++-...+.|.+.++........+. .-.....|++.|..+.++++-.. .+.|...++......
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 3566788877 44 55555667889999987665544444 44568999999944444444322 378888888765444
Q ss_pred EEec-cCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCe
Q 005646 431 DWVD-IRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNH 469 (686)
Q Consensus 431 ~~~~-~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~ 469 (686)
.+.. .-.....|+++|++..|+.+. ..+.|..+|+....
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 279 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence 3332 235678999999877776664 46789999987543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.091 Score=53.26 Aligned_cols=113 Identities=10% Similarity=-0.010 Sum_probs=73.9
Q ss_pred CeeEEEeeCC-C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcC-CcEEEEecCCCcEEE
Q 005646 356 EILDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHVVD 431 (686)
Q Consensus 356 ~V~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~~~~ 431 (686)
....+++.+. + ++++-...+.|.+.++........+. .......++++|.++.++++.... +.|...++.......
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~ 157 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 157 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE
Confidence 4467888764 4 44555667899999987654433333 346789999999444444444333 688888876544333
Q ss_pred Ee-ccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCC
Q 005646 432 WV-DIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDN 468 (686)
Q Consensus 432 ~~-~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~ 468 (686)
+. ..-.....++++|++..|+.+. ..+.|..+|+...
T Consensus 158 ~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (316)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence 32 2234578999999877666654 4678999998753
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.17 Score=58.39 Aligned_cols=181 Identities=12% Similarity=0.076 Sum_probs=114.4
Q ss_pred CCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE
Q 005646 353 HSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 353 h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
....|.++...+++.|..|+.++-|..+|..+++...... ....|.++...+ ++. |..|+. +-|..||..+++.
T Consensus 405 ~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lwigt~-~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 405 LSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKK-IWIGTH-AGVFVIDLASKKV 481 (781)
T ss_dssp CCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSE-EEEEET-TEEEEEESSSSSC
T ss_pred CCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCC-EEEEEC-CceEEEeCCCCeE
Confidence 3467899988888877778887889999988776543321 346799998876 554 555665 5689999988765
Q ss_pred EEEecc------CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 430 VDWVDI------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 430 ~~~~~~------~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
...... ...|.++...++|++.+ |+..+-+..||..+.+.... ..........|.++...+ ++. |.
T Consensus 482 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~-----~~~~~l~~~~i~~i~~d~-~g~-lW 553 (781)
T 3v9f_A 482 IHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKF-----NQYEGFCSNTINQIYRSS-KGQ-MW 553 (781)
T ss_dssp CEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEE-----CTTTTCSCSCEEEEEECT-TSC-EE
T ss_pred EecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEc-----cCCCCCCCCeeEEEEECC-CCC-EE
Confidence 544322 35689999999987554 55544588899876654321 111122345688888776 444 44
Q ss_pred EEeCCCcEEEEeCCc------------------ceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 504 VSCADSQVRILQGPN------------------VIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 504 ~~s~D~~I~iwd~~~------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
+++.+|-|..||..+ .+...++|.+.++ +.+| |..++..+.
T Consensus 554 i~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~ 612 (781)
T 3v9f_A 554 LATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKK 612 (781)
T ss_dssp EEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTT
T ss_pred EEECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCC
Confidence 444455546666432 1233346665554 4444 666776653
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.11 Score=60.02 Aligned_cols=184 Identities=9% Similarity=0.035 Sum_probs=115.7
Q ss_pred CCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEe---e-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE
Q 005646 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF---P-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 354 ~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~---~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
...|.++...++|.|..|+.++-|..||..++...... . ....|.++...+ ++. |..|+.++-|..+|..+++.
T Consensus 362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~ 439 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLGNISYYNTRLKKF 439 (781)
T ss_dssp SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTEEEEEECSSSCEE
T ss_pred CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccCCEEEEcCCCCcE
Confidence 35689998888888888887788999998765433211 1 346789998876 555 44577777799999988776
Q ss_pred EEEec---cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 430 VDWVD---IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 430 ~~~~~---~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
..... ....|.++...++|+ |.+|+. +-+..||..+++...... ..........|.++...+ ++ .|.+++
T Consensus 440 ~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~---~~~~~~~~~~i~~i~~d~-~g-~lWigt 512 (781)
T 3v9f_A 440 QIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYD---TSNSQLLENFVRSIAQDS-EG-RFWIGT 512 (781)
T ss_dssp EECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEEC---TTTSSCSCSCEEEEEECT-TC-CEEEEE
T ss_pred EEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEeccc---CcccccccceeEEEEEcC-CC-CEEEEE
Confidence 54432 245789999888886 445555 568999987765432110 000011235688888776 44 455555
Q ss_pred CCCcEEEEeCCc------------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 507 ADSQVRILQGPN------------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 507 ~D~~I~iwd~~~------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.++.|..++..+ .+...++|.+.++ +.+|.|..||..+++
T Consensus 513 ~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 513 FGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFD 570 (781)
T ss_dssp SSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCC
T ss_pred cCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCc
Confidence 544466676432 1223345665554 446655888876654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.021 Score=61.42 Aligned_cols=111 Identities=9% Similarity=0.101 Sum_probs=70.0
Q ss_pred CeeEEEe-------eCCC-EEEEEECCC-------cEEEEECCC-Ceee-----eEeeCCCCeEEEEEeecCCCEEEEEE
Q 005646 356 EILDLSW-------SKNN-YLLSASIDK-------TVRLWRVGN-DHCL-----RVFPHSNYVTCVHFNPVDDNYFISGS 414 (686)
Q Consensus 356 ~V~~l~~-------s~~~-~L~s~s~Dg-------~V~iWd~~~-~~~~-----~~~~h~~~V~~v~fsp~~~~~l~sgs 414 (686)
....|+| ++++ +|+.+...+ .|.+.+... +... ..+..-.....++++|.++.++++-.
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~ 266 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSY 266 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEET
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEEC
Confidence 4678888 8888 577666554 255665333 1221 12221123356788995566677777
Q ss_pred cCCcEEEEecC-------CCcE--------------EEEeccCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCC
Q 005646 415 IDGKVRIWAVL-------SCHV--------------VDWVDIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVS 466 (686)
Q Consensus 415 ~Dg~V~iwd~~-------~~~~--------------~~~~~~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~ 466 (686)
.++.|..+|+. ++.. +...........++|+|+|++|+++ +....|+.++..
T Consensus 267 ~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 267 EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 88899999997 5543 1122223456899999999965554 556788886654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.043 Score=55.44 Aligned_cols=110 Identities=11% Similarity=0.047 Sum_probs=81.0
Q ss_pred eeEEEe---eCCC-EEEEEE-------------CCCcEEEEECC---CCeeeeEeeC-------------C-CCeEEEEE
Q 005646 357 ILDLSW---SKNN-YLLSAS-------------IDKTVRLWRVG---NDHCLRVFPH-------------S-NYVTCVHF 402 (686)
Q Consensus 357 V~~l~~---s~~~-~L~s~s-------------~Dg~V~iWd~~---~~~~~~~~~h-------------~-~~V~~v~f 402 (686)
+..|.| .|++ ++++.. .+..|..+|+. +++.+....- . .....|+.
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 368888 5778 444332 26789999999 7877665541 1 24889999
Q ss_pred eecCCCEEEEEEcC-CcEEEEecCCCcEEEEecc------CCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 403 NPVDDNYFISGSID-GKVRIWAVLSCHVVDWVDI------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 403 sp~~~~~l~sgs~D-g~V~iwd~~~~~~~~~~~~------~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
.+ +++..++++.- +.|..++........+... ....+.|+++|+|+.|++....|.+..+|+..
T Consensus 145 D~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 145 DR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 99 99999999998 8888888765544433311 12367899999999999987799999999873
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.30 E-value=0.037 Score=56.29 Aligned_cols=183 Identities=4% Similarity=-0.034 Sum_probs=115.8
Q ss_pred CeeEEEeeCC-C-EEEEEECCCcEEEEECCCCeee-eEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE
Q 005646 356 EILDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCL-RVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (686)
Q Consensus 356 ~V~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~~~~-~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~ 431 (686)
....++|.+. + ++++-...+.|..+++...... ..+. .-.....+++.+..++++++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 4568899885 4 4555556788999998766422 2222 334577899987556666666677899999987654333
Q ss_pred Ee-ccCCcEEEEEEccCCCEEEEEec--CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 432 WV-DIRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 432 ~~-~~~~~V~~v~~spdg~~l~~gs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
.. ..-.....+++.|.+..|+.+.. .+.|..+++....... +. .......++|+++|.++.++++-+..
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~-----~~---~~~l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI-----II---NSEIYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE-----EE---CSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE-----EE---ECCCCCccEEEEeccCCEEEEEECCC
Confidence 33 33456789999997666666553 5788888886533211 10 01124578999999666666666677
Q ss_pred CcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 509 SQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 509 ~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.|..++... .+++. .+..+.+-...+.|..++..+++
T Consensus 188 ~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp TEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCC
Confidence 8888887531 12222 33444454556677777776554
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.13 Score=54.84 Aligned_cols=153 Identities=8% Similarity=0.012 Sum_probs=95.3
Q ss_pred CeeEEEeeCC---CEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC---Cc-EEEEecCCCc
Q 005646 356 EILDLSWSKN---NYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---GK-VRIWAVLSCH 428 (686)
Q Consensus 356 ~V~~l~~s~~---~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D---g~-V~iwd~~~~~ 428 (686)
....|+|.|+ +.|+.+...+.|+.+|..++..............|+|+| +++++++.... .. +...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999985 566666555899999998887766665666789999999 88855554321 11 3333332221
Q ss_pred E-EEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCC-eEEEE
Q 005646 429 V-VDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS-KVMVS 505 (686)
Q Consensus 429 ~-~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~-~l~~~ 505 (686)
. ......-.....++++| +|.++++-..++.|+.+|..++..... +... .....-..++|+| +++ ++++-
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~--~~~~----~~~~~~~~ia~dp-dG~~LYvad 291 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE--EVMM----DTKGSNFHIVWHP-TGDWAYIIY 291 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE--EEEC----SCCSSCEEEEECT-TSSEEEEEE
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE--Eecc----CCCCCcccEEEeC-CCCEEEEEe
Confidence 1 01111223456788999 676666666678899999876654111 1000 1112235799999 555 55666
Q ss_pred eCCCcEEEEeC
Q 005646 506 CADSQVRILQG 516 (686)
Q Consensus 506 s~D~~I~iwd~ 516 (686)
...+.|+.++.
T Consensus 292 ~~~~~I~~~~~ 302 (433)
T 4hw6_A 292 NGKHCIYRVDY 302 (433)
T ss_dssp TTTTEEEEEEB
T ss_pred CCCCEEEEEeC
Confidence 67788998774
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.036 Score=63.69 Aligned_cols=241 Identities=8% Similarity=0.019 Sum_probs=115.7
Q ss_pred eee-cCCCccceeec-----cceEEEEEcCCc-cccccccccCceecccCCceEEEEEeeCCCEEEEEeCC-----CcEE
Q 005646 208 RVR-LNEEDAMFCSK-----VQRVKVYHCKKR-SKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD-----GVVR 275 (686)
Q Consensus 208 ~~s-~~~~~l~~g~~-----d~~v~vw~~~~~-~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-----g~I~ 275 (686)
+++ +++++++.+.. ..+|+++++... .. +. ..+.. ....++|+|||+.|+....| ..|.
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~-----~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IA-----DKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CC-----CCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CC-----ccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 567 78887775433 235888887654 21 11 11111 13468899999988877765 2566
Q ss_pred EEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCC-eEEe-ccC
Q 005646 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP-LHEF-HGH 353 (686)
Q Consensus 276 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l-~~h 353 (686)
++++.++.....+ .+............+++++..++..........+.+++...- .... +..+ ...
T Consensus 251 ~~~lgt~~~~~~l----------v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~--~~~~~~~~l~~~~ 318 (751)
T 2xe4_A 251 RHVMGKLQSEDVC----------LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG--NAHNTLEIVRPRE 318 (751)
T ss_dssp EEETTSCGGGCEE----------EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC--TTCCCEEESSCCC
T ss_pred EEECCCCchhcEE----------EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC--CCCceeEEeecCC
Confidence 7777654311111 111111111233445555554444433333333333332211 0011 0223 233
Q ss_pred CCCeeEEEeeCCCEE-EEEECC----CcEEEEECCCC-eeee-EeeCCCCeEEEEEeecCCCEEEEEEcCCcE--EEEec
Q 005646 354 SGEILDLSWSKNNYL-LSASID----KTVRLWRVGND-HCLR-VFPHSNYVTCVHFNPVDDNYFISGSIDGKV--RIWAV 424 (686)
Q Consensus 354 ~~~V~~l~~s~~~~L-~s~s~D----g~V~iWd~~~~-~~~~-~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V--~iwd~ 424 (686)
......+.|+..+.| +....+ ..|..+++.+. .... .+.+...+.--.+.+..+.++++...++.. .++|+
T Consensus 319 ~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 319 KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 455566666655544 444433 25666777652 3333 455554433333444244566677777764 45564
Q ss_pred -------CCCc-EEEEeccCCc--EEEEEE----ccCCCEEE-EEecC---CcEEEEeCCCCee
Q 005646 425 -------LSCH-VVDWVDIRQI--VTAVCY----RPDGQGGI-VGSMM---GDCRFYNVSDNHL 470 (686)
Q Consensus 425 -------~~~~-~~~~~~~~~~--V~~v~~----spdg~~l~-~gs~d---g~i~iwd~~~~~~ 470 (686)
.+++ ... ...... +..+.+ ++++..++ +.+.. ..++.+|+.+++.
T Consensus 399 ~~~~~~~~~g~~~~~-l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 399 DSQDGVFKAGTGLRE-VVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp CTTTSCCCTTTCCEE-CCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred ccccccccCCccceE-ECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 3444 322 222222 333322 34665444 33322 4578888876654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.19 E-value=0.13 Score=52.26 Aligned_cols=151 Identities=5% Similarity=-0.047 Sum_probs=93.1
Q ss_pred CeeEEEeeCC-C-EEEEEECCCcEEEEECCCCeeeeEe-eCCCCeEEEEEeecCCCEEEEEE--cCCcEEEEecCCCcEE
Q 005646 356 EILDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGS--IDGKVRIWAVLSCHVV 430 (686)
Q Consensus 356 ~V~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~~~~~~~-~h~~~V~~v~fsp~~~~~l~sgs--~Dg~V~iwd~~~~~~~ 430 (686)
....+++.+. + ++++-...+.|.+.++........+ ........|++.| .+..|+... ..+.|...++......
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp-~~g~ly~td~~~~~~I~r~~~dG~~~~ 158 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMDGSSRF 158 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEG-GGTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCeE
Confidence 4567888764 4 4555556788999998755433333 2446679999999 444444444 3578888887654333
Q ss_pred EEe-ccCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 431 DWV-DIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 431 ~~~-~~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
.+. ..-...+.++++|++..|+.+ +..+.|..+|+........ .. .......++++.. +..+.+-...
T Consensus 159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~----~~----~~~~~P~glav~~--~~lywtd~~~ 228 (318)
T 3sov_A 159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV----VK----GSLPHPFALTLFE--DILYWTDWST 228 (318)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE----EC----SCCSCEEEEEEET--TEEEEEETTT
T ss_pred EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEE----ec----CCCCCceEEEEeC--CEEEEEecCC
Confidence 322 223456899999977666665 4567899999875332211 11 1234467777753 3555555566
Q ss_pred CcEEEEeCC
Q 005646 509 SQVRILQGP 517 (686)
Q Consensus 509 ~~I~iwd~~ 517 (686)
+.|..++..
T Consensus 229 ~~V~~~~~~ 237 (318)
T 3sov_A 229 HSILACNKY 237 (318)
T ss_dssp TEEEEEETT
T ss_pred CeEEEEECC
Confidence 777777754
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.052 Score=54.85 Aligned_cols=163 Identities=8% Similarity=0.097 Sum_probs=106.2
Q ss_pred eccCCCCeeEEEeeCCC-EEEEEE-CCCcEEEEECCCCeeeeE-eeCC-------CCeEEEEE---eecCCCEEEEEEc-
Q 005646 350 FHGHSGEILDLSWSKNN-YLLSAS-IDKTVRLWRVGNDHCLRV-FPHS-------NYVTCVHF---NPVDDNYFISGSI- 415 (686)
Q Consensus 350 l~~h~~~V~~l~~s~~~-~L~s~s-~Dg~V~iWd~~~~~~~~~-~~h~-------~~V~~v~f---sp~~~~~l~sgs~- 415 (686)
+......--+++|.+.. .|+.++ ..++|..||...+..... +..- ..+..|.| .| ++.++++...
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccc
Confidence 33444555689998855 666555 799999999986644333 2221 13689999 68 6667765432
Q ss_pred ------------CCcEEEEecC---CCcEEEEeccC--------------CcEEEEEEccCCCEEEEEecC-CcEEEEeC
Q 005646 416 ------------DGKVRIWAVL---SCHVVDWVDIR--------------QIVTAVCYRPDGQGGIVGSMM-GDCRFYNV 465 (686)
Q Consensus 416 ------------Dg~V~iwd~~---~~~~~~~~~~~--------------~~V~~v~~spdg~~l~~gs~d-g~i~iwd~ 465 (686)
+..|..||+. +++.+...... .....++..++|+..++++.. +.|..++.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 6789999999 77766544421 247899999999999999888 88888777
Q ss_pred CCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 466 SDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
....... +.............++++++| +|+.|++...+|.+..+|+.
T Consensus 167 dG~~~~~---~~~~~~~~~~~~G~nGIv~~p----------------------------dg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 167 DGKTVST---FAWESGNGGQRPGYSGITFDP----------------------------HSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp TSCCEEE---EEECCCCSSSCCSCSEEEEET----------------------------TTTEEEEESSSSSEEEEECS
T ss_pred CCCEEee---eeecCCCcccccCcceEEEeC----------------------------CCCEEEEEcCCCeEEEEcCC
Confidence 6543221 111111112233467888888 66666666557777777766
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.15 E-value=0.38 Score=57.65 Aligned_cols=81 Identities=11% Similarity=0.058 Sum_probs=52.6
Q ss_pred cCcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC------CCEEEEEeC-CCcEE
Q 005646 203 QGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD------GQYLASAGD-DGVVR 275 (686)
Q Consensus 203 ~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g~~Lasgs~-Dg~I~ 275 (686)
...+...+.++.+++.+. ++.+.++.++... +... ...+ -...|.|+++.|. ++++|.|.. |++|+
T Consensus 513 ~~~I~~As~n~~~vvva~-g~~l~~fel~~~~--L~~~-~~~~---l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~ 585 (1158)
T 3ei3_A 513 AKNISVASCNSSQVVVAV-GRALYYLQIHPQE--LRQI-SHTE---MEHEVACLDITPLGDSNGLSPLCAIGLWTDISAR 585 (1158)
T ss_dssp CCCCCEEEECSSEEEEEE-TTEEEEEEEETTE--EEEE-EEEE---CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEE
T ss_pred CCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCc--eeee-cccC---CCCceEEEEeecCCCCcccccEEEEEECCCCEEE
Confidence 345556666677777774 6677777665421 2111 1112 2457999999863 369999996 99999
Q ss_pred EEEeecCeeeeeecc
Q 005646 276 LWQVVEDERLTEVDI 290 (686)
Q Consensus 276 vWd~~~~~~~~~~~~ 290 (686)
|+++.+.+.+.....
T Consensus 586 I~sL~~l~~~~~~~L 600 (1158)
T 3ei3_A 586 ILKLPSFELLHKEML 600 (1158)
T ss_dssp EEETTTCCEEEEEEC
T ss_pred EEECCCCCeEEEEEC
Confidence 999987665544443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.012 Score=65.41 Aligned_cols=59 Identities=15% Similarity=0.012 Sum_probs=42.5
Q ss_pred CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeee
Q 005646 416 DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDA 474 (686)
Q Consensus 416 Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~ 474 (686)
+|.|.-||+.+++++-......++..-.....+..+++|+.||.++.||..+++.....
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence 58899999999998744443333322222235668888999999999999999876543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.41 Score=54.93 Aligned_cols=115 Identities=10% Similarity=-0.016 Sum_probs=77.3
Q ss_pred CCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcC-CcEEEEecCCCcEE
Q 005646 355 GEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHVV 430 (686)
Q Consensus 355 ~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~~~ 430 (686)
.....|++.+.+ ++++-...+.|.+.++........+. .-.....|++.|..+.++++-... +.|...++......
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~ 550 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 550 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence 345678887655 55555667899999987655444443 445689999999434444443333 78888888766554
Q ss_pred EEecc-CCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCe
Q 005646 431 DWVDI-RQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNH 469 (686)
Q Consensus 431 ~~~~~-~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~ 469 (686)
.+... -.....|++++.+..|+.+. ..+.|..+++....
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 44433 25688999998777666654 45679999987544
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.24 Score=50.34 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=64.6
Q ss_pred CCCCeeEEEeeCCCEEEEEECCCcEEE-EEC--CCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE
Q 005646 353 HSGEILDLSWSKNNYLLSASIDKTVRL-WRV--GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 353 h~~~V~~l~~s~~~~L~s~s~Dg~V~i-Wd~--~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
+...+..+.+.+++.++..+.++.+.. +|- .+-+.+ .......+..+.+.| ++.++ .++.+|.+++.+...++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~-~g~~~-~~~~~G~~~~s~~D~G~t 237 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTP-DGRLW-MIVNGGKIAFSDPDNSEN 237 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECT-TSCEE-EEETTTEEEEEETTEEEE
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC-CCCCCCccceeEECC-CCCEE-EEeCCceEEEecCCCCCe
Confidence 344678888988884444445555444 342 122222 122567889999988 66655 556688887764332332
Q ss_pred EEEec-----cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCC
Q 005646 430 VDWVD-----IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 430 ~~~~~-----~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~ 468 (686)
-.... ....+.++.+.++++.++++ .+|.+ ++....+
T Consensus 238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG 279 (327)
T 2xbg_A 238 WGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGG 279 (327)
T ss_dssp ECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTT
T ss_pred eEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCC
Confidence 22111 12358899999988777766 46766 3444433
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.11 Score=52.85 Aligned_cols=92 Identities=10% Similarity=0.133 Sum_probs=68.1
Q ss_pred CCcEEEEECC--CCeeeeEee-------CC-CCeEEEEE--eecCCC-EEEEEEcCCcEEEEecC-------CCcEEEEe
Q 005646 374 DKTVRLWRVG--NDHCLRVFP-------HS-NYVTCVHF--NPVDDN-YFISGSIDGKVRIWAVL-------SCHVVDWV 433 (686)
Q Consensus 374 Dg~V~iWd~~--~~~~~~~~~-------h~-~~V~~v~f--sp~~~~-~l~sgs~Dg~V~iwd~~-------~~~~~~~~ 433 (686)
+.+|++|++. +++ +..+. .. ..+..+++ +|..+. ++++...+|.+..|++. +.+++..+
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 5789999773 433 44442 11 56677887 663444 68888889999999983 34566777
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCC
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~ 466 (686)
.....+..+.+.+....|+++-.+..|..|+..
T Consensus 177 ~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 177 KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred cCCCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence 788899999999988899999998777777754
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.029 Score=62.42 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=69.5
Q ss_pred EEEEECCCcEEEEECCCCeeeeEeeCCC-----CeEEE-EEeecCCCEEEEEE------cCCcEEEEecCCCcEEEEecc
Q 005646 368 LLSASIDKTVRLWRVGNDHCLRVFPHSN-----YVTCV-HFNPVDDNYFISGS------IDGKVRIWAVLSCHVVDWVDI 435 (686)
Q Consensus 368 L~s~s~Dg~V~iWd~~~~~~~~~~~h~~-----~V~~v-~fsp~~~~~l~sgs------~Dg~V~iwd~~~~~~~~~~~~ 435 (686)
|+.++.|+.|.-+|..+++.+....... .+++- .. - + ..++.++ .+|.|+-+|..+++.+-....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-V-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-E-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-E-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 8888899999999999999988766222 22221 11 1 3 4555555 389999999999998743332
Q ss_pred CCcE---------------------------------------EEEEEccCCCEEEEEecCC----------------cE
Q 005646 436 RQIV---------------------------------------TAVCYRPDGQGGIVGSMMG----------------DC 460 (686)
Q Consensus 436 ~~~V---------------------------------------~~v~~spdg~~l~~gs~dg----------------~i 460 (686)
.... ..+++.++...++.++.++ .|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 2111 1356777777888887653 78
Q ss_pred EEEeCCCCeeee
Q 005646 461 RFYNVSDNHLEL 472 (686)
Q Consensus 461 ~iwd~~~~~~~~ 472 (686)
..+|..+++...
T Consensus 281 ~Ald~~TG~~~W 292 (599)
T 1w6s_A 281 FGRDADTGEAKF 292 (599)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEeCCCCceee
Confidence 888888887654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.88 E-value=0.1 Score=54.89 Aligned_cols=158 Identities=8% Similarity=-0.037 Sum_probs=102.6
Q ss_pred cCCCCeeEEEeeCCC-EE-EEEECCCcEEEEECCCC----eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEec
Q 005646 352 GHSGEILDLSWSKNN-YL-LSASIDKTVRLWRVGND----HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~-~L-~s~s~Dg~V~iWd~~~~----~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~ 424 (686)
.....+..|+|++.+ .| ++-...+.|+.+++... .....+. .......|++.+..++++++-...+.|.+.++
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence 345678899999855 44 45456788999998752 2233333 44568899999855666666667889999999
Q ss_pred CCCcEEEEec-cCCcEEEEEEccCCCEEEEEec--CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCe
Q 005646 425 LSCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (686)
Q Consensus 425 ~~~~~~~~~~-~~~~V~~v~~spdg~~l~~gs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~ 501 (686)
.......... .-.....|+++|.+..|+.... .+.|...++........ . ........+|++.+.++.+
T Consensus 189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~----~----~~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----V----TENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE----E----CSSCSCEEEEEEETTTTEE
T ss_pred CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE----E----ECCCCceEEEEEEeCCCEE
Confidence 8765544443 3345789999997666666543 37899888875432211 1 1122457899999855555
Q ss_pred EEEEeCCCcEEEEeCC
Q 005646 502 VMVSCADSQVRILQGP 517 (686)
Q Consensus 502 l~~~s~D~~I~iwd~~ 517 (686)
+++-...+.|..+|..
T Consensus 261 Y~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVN 276 (400)
T ss_dssp EEEETTTTEEEEEETT
T ss_pred EEEECCCCEEEEEeCC
Confidence 5555566777777743
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.21 Score=57.25 Aligned_cols=160 Identities=8% Similarity=-0.040 Sum_probs=104.1
Q ss_pred eccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCC----eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEE
Q 005646 350 FHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGND----HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (686)
Q Consensus 350 l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~----~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iw 422 (686)
+......+..|+|.+.. ++++-...+.|+.+++... .....+. .......|++.+..++++++-...+.|.+.
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 33345667899999854 4455556688999998753 2233333 445678899998455666676778899999
Q ss_pred ecCCCcEEEEec-cCCcEEEEEEccCCCEEEEEec--CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 423 AVLSCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 423 d~~~~~~~~~~~-~~~~V~~v~~spdg~~l~~gs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
++.......+.. .-.....|++.|.+.+|+.... .+.|...++........ + ........+|++.+..+
T Consensus 499 ~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l----v----~~~l~~P~GLavD~~~~ 570 (791)
T 3m0c_C 499 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----V----TENIQWPNGITLDLLSG 570 (791)
T ss_dssp ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE----E----CSSCSCEEEEEEETTTT
T ss_pred eCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE----E----eCCCCCceEEEEecCCC
Confidence 998766544443 3345889999998666666543 26788888875443211 1 11235688999998565
Q ss_pred CeEEEEeCCCcEEEEeCC
Q 005646 500 SKVMVSCADSQVRILQGP 517 (686)
Q Consensus 500 ~~l~~~s~D~~I~iwd~~ 517 (686)
.++++-.....|..++..
T Consensus 571 ~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 571 RLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred eEEEEeCCCCcEEEEecC
Confidence 556665667788888753
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.63 Score=49.97 Aligned_cols=107 Identities=9% Similarity=-0.012 Sum_probs=65.7
Q ss_pred eEEEeeCCC--EEEEEECCCcEEEEECC-------CCee-----------eeE-ee--CCCCeEEEEEeecCCCE-EEEE
Q 005646 358 LDLSWSKNN--YLLSASIDKTVRLWRVG-------NDHC-----------LRV-FP--HSNYVTCVHFNPVDDNY-FISG 413 (686)
Q Consensus 358 ~~l~~s~~~--~L~s~s~Dg~V~iWd~~-------~~~~-----------~~~-~~--h~~~V~~v~fsp~~~~~-l~sg 413 (686)
..++++|++ ++++-..++.|..+|+. ++.. +.. +. .......|+|+| ++++ +++-
T Consensus 250 ~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p-~G~~lYvaD 328 (496)
T 3kya_A 250 NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP-TGKYAYFGV 328 (496)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT-TSSEEEEEE
T ss_pred eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcC-CCCEEEEEe
Confidence 567888954 55556677889999987 5543 112 22 334568999999 8885 4554
Q ss_pred EcCCcEEEEecC--CCcE---EEEecc---C------------CcEE-EEEEc-------cCCCEEEEEecCCcEEEEeC
Q 005646 414 SIDGKVRIWAVL--SCHV---VDWVDI---R------------QIVT-AVCYR-------PDGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 414 s~Dg~V~iwd~~--~~~~---~~~~~~---~------------~~V~-~v~~s-------pdg~~l~~gs~dg~i~iwd~ 465 (686)
+....|+.++.. ++.+ ..+.+. . .... .++.. ++|.++++=.....|+.++.
T Consensus 329 ~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~ 408 (496)
T 3kya_A 329 INNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP 408 (496)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred CCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence 567889986653 3332 112111 0 1234 45554 56666666667788888884
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=1.3 Score=49.36 Aligned_cols=151 Identities=5% Similarity=-0.057 Sum_probs=93.1
Q ss_pred CeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEe-eCCCCeEEEEEeecCCCEEEEE-EcCCcEEEEecCCCcEEE
Q 005646 356 EILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISG-SIDGKVRIWAVLSCHVVD 431 (686)
Q Consensus 356 ~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~-~h~~~V~~v~fsp~~~~~l~sg-s~Dg~V~iwd~~~~~~~~ 431 (686)
....|++.+.+ ++++-...+.|.+.++........+ ..-.....|++.|..+.++++- +..+.|...++.......
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE
Confidence 34567777554 4455556778999988755433333 2445679999999444444443 225678888887655444
Q ss_pred EeccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCc
Q 005646 432 WVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (686)
Q Consensus 432 ~~~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~ 510 (686)
+...-.....|+++++++.|+.+. ..+.|..+|+....... +.. ......++++.. +.++++-...+.
T Consensus 161 l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v-----~~~----~l~~P~glav~~--~~ly~tD~~~~~ 229 (628)
T 4a0p_A 161 LVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREV-----IAD----DLPHPFGLTQYQ--DYIYWTDWSRRS 229 (628)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-----EEE----CCSCEEEEEEET--TEEEEEETTTTE
T ss_pred EECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEE-----eec----cCCCceEEEEEC--CEEEEecCCCCE
Confidence 444455678999999877666654 46789999987644321 111 123356777764 344444445677
Q ss_pred EEEEeCC
Q 005646 511 VRILQGP 517 (686)
Q Consensus 511 I~iwd~~ 517 (686)
|...|..
T Consensus 230 I~~~dk~ 236 (628)
T 4a0p_A 230 IERANKT 236 (628)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 7777743
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0053 Score=69.96 Aligned_cols=155 Identities=6% Similarity=-0.036 Sum_probs=97.6
Q ss_pred CCeeEEEeeCCC-EEEEE-ECCCcEEEEECCC----CeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC
Q 005646 355 GEILDLSWSKNN-YLLSA-SIDKTVRLWRVGN----DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~-s~Dg~V~iWd~~~----~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~ 427 (686)
..+..|+|.+.+ .|+.+ ...+.|+.+++.. ......+. .......|++.+..++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 456788999865 55544 4568899999875 22222222 22345678888645666666666789999998876
Q ss_pred cEEEEecc-CCcEEEEEEccCCCEEEEEec--CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 428 HVVDWVDI-RQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 428 ~~~~~~~~-~~~V~~v~~spdg~~l~~gs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
....+... ......|+++|.+.+|+.+.. .+.|..+++....... + ........++|+|+|.++.++++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~-----l---~~~~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-----L---VTENIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE-----E---SCSSCSSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE-----E---EeCCCCCccEEEEeccCCEEEEE
Confidence 55544432 244678899997665555443 2678888776432211 0 01122456789999966667777
Q ss_pred EeCCCcEEEEeCC
Q 005646 505 SCADSQVRILQGP 517 (686)
Q Consensus 505 ~s~D~~I~iwd~~ 517 (686)
-...+.|.+++..
T Consensus 558 D~~~~~I~~~d~d 570 (699)
T 1n7d_A 558 DSKLHSISSIDVN 570 (699)
T ss_dssp ETTTTEEEEECSS
T ss_pred ecCCCeEEEEccC
Confidence 7777888888753
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.87 Score=50.81 Aligned_cols=183 Identities=9% Similarity=-0.033 Sum_probs=118.4
Q ss_pred CCeeEEEeeCCC-E-EEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE
Q 005646 355 GEILDLSWSKNN-Y-LLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (686)
Q Consensus 355 ~~V~~l~~s~~~-~-L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~ 431 (686)
..+..|+|++.+ . +++-..++.|..+++........+. .......|++.+..++++++-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 456789999865 4 4455567899999987654444444 224678899988456666666667889999987654333
Q ss_pred Ee-ccCCcEEEEEEccCCCEEEEEec--CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 432 WV-DIRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 432 ~~-~~~~~V~~v~~spdg~~l~~gs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
+. ..-.....|++.|....|+.... .+.|...++........ . .......+|++.+..+.++++-...
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l----~-----~~~~~P~GlalD~~~~~LY~aD~~~ 187 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL----V-----PNVGRANGLTIDYAKRRLYWTDLDT 187 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE----E-----CSCSSEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE----E-----CCCCCcceEEEccccCEEEEEECCC
Confidence 32 33345789999996556665543 56788888765443211 1 1235688999999555566666677
Q ss_pred CcEEEEeCCc--------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 509 SQVRILQGPN--------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 509 ~~I~iwd~~~--------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.|..++... .++++. +..++|-...+.|...|..+++
T Consensus 188 ~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 188 NLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp TEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 8888887532 133332 4445555567788888876664
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.031 Score=63.57 Aligned_cols=111 Identities=11% Similarity=0.002 Sum_probs=67.5
Q ss_pred eEEEeeCC-C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcC-CcEEEEecCCCcEEEEe
Q 005646 358 LDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHVVDWV 433 (686)
Q Consensus 358 ~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~~~~~~ 433 (686)
..|++.+. + ++++-...+.|.+.++........+. .......|++.|..+.++++-... +.|..+++.......+.
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 45666643 3 44444567889999987654443333 234567889998445555544333 67888877643322222
Q ss_pred -ccCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCCCC
Q 005646 434 -DIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDN 468 (686)
Q Consensus 434 -~~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~~~ 468 (686)
..-...+.|+|+|++..|+.+ +..+.|..+++...
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 112346789999976655554 45678999998653
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.8 Score=46.96 Aligned_cols=108 Identities=15% Similarity=0.183 Sum_probs=66.3
Q ss_pred eeEEEeeC--CC--EEEEEEC---CCcEEEEECCCC--e--eeeEeeC--CCCeEEEEEeecCCCEEEEEEc--------
Q 005646 357 ILDLSWSK--NN--YLLSASI---DKTVRLWRVGND--H--CLRVFPH--SNYVTCVHFNPVDDNYFISGSI-------- 415 (686)
Q Consensus 357 V~~l~~s~--~~--~L~s~s~---Dg~V~iWd~~~~--~--~~~~~~h--~~~V~~v~fsp~~~~~l~sgs~-------- 415 (686)
...+.+.+ ++ +|+.+.. +.+|.+|++... . .+..+.+ -...+.+.+.+ ++.++++...
T Consensus 114 PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~ 192 (355)
T 3sre_A 114 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLK 192 (355)
T ss_dssp EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHH
T ss_pred eeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccc
Confidence 34455443 33 4544432 467888877653 2 2223332 35689999999 8887776541
Q ss_pred ---------CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCC
Q 005646 416 ---------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSD 467 (686)
Q Consensus 416 ---------Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~ 467 (686)
.|.|.-+|. +++......-...+.++|+||++.++++. ..+.|+.|++..
T Consensus 193 ~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 193 SWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp HHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 244555554 33333333334578999999998877764 578899999864
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.15 E-value=1.3 Score=44.71 Aligned_cols=177 Identities=9% Similarity=0.065 Sum_probs=94.6
Q ss_pred CCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEe--eCCCCeEEEEEeecCCCEEEEEEcCCcEE-EEec--CCCcE
Q 005646 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVR-IWAV--LSCHV 429 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~--~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~-iwd~--~~~~~ 429 (686)
+.+..+.+.+++.++.++.++.|..- .+.++.-... .+...+..+++.| ++.+++.+. +|.+. -+|- .+-+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 45677887777744455556654321 2223322222 2566789999998 777776654 45443 3442 22223
Q ss_pred EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCC
Q 005646 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (686)
Q Consensus 430 ~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~ 509 (686)
+. ......+..+.+.++++.+++ +.+|.+++.+...++.-.. ...........+..+.+.+ ++..++ ++.++
T Consensus 199 ~~-~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~----~~~~~~~~~~~~~~v~~~~-~~~~~~-~g~~g 270 (327)
T 2xbg_A 199 HN-RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGE----LLSPLRRNSVGFLDLAYRT-PNEVWL-AGGAG 270 (327)
T ss_dssp EE-CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECC----CBCTTSSCCSCEEEEEESS-SSCEEE-EESTT
T ss_pred CC-CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEe----ccCCcccCCcceEEEEecC-CCEEEE-EeCCC
Confidence 32 234567889999999876654 4678877764322221100 0000011223588888887 444444 44566
Q ss_pred cEEEE-e-C-----C----------cceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 510 QVRIL-Q-G-----P----------NVIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 510 ~I~iw-d-~-----~----------~~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
.|..- | + . ..+.+. ++..++.++.+|.|.-++-
T Consensus 271 ~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~-~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 271 ALLCSQDGGQTWQQDVDVKKVPSNFYKILFF-SPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp CEEEESSTTSSCEECGGGTTSSSCCCEEEEE-ETTEEEEECSTTEEEEECC
T ss_pred eEEEeCCCCcccEEcCccCCCCCCeEEEEEE-CCCceEEEcCCceEEEEcC
Confidence 66432 2 1 1 013333 3344666677887776654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.15 E-value=1.1 Score=45.93 Aligned_cols=70 Identities=10% Similarity=0.207 Sum_probs=37.5
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC---CCEEEEEeC-C-----CcEEE
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD---GQYLASAGD-D-----GVVRL 276 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasgs~-D-----g~I~v 276 (686)
...+.+++. +.++...++|++++ ......+..+ ..+.........|+|+|+ +.+|..+.. . ..|..
T Consensus 35 ~ia~~pdG~-l~V~e~~g~I~~i~-~g~~~~~~~~---~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 35 ALAFLPDGG-MLIAERPGRIRLFR-EGRLSTYAEL---SVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp EEEECTTSC-EEEEETTTEEEEEE-TTEEEEEEEC---CCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred EEEEcCCCe-EEEEeCCCeEEEEE-CCCccEeecc---eEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 345667776 44455668999887 3221111111 112223457899999998 444444332 2 44555
Q ss_pred EEee
Q 005646 277 WQVV 280 (686)
Q Consensus 277 Wd~~ 280 (686)
++..
T Consensus 110 ~~~~ 113 (352)
T 2ism_A 110 LRHL 113 (352)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 5554
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=1.5 Score=48.90 Aligned_cols=152 Identities=5% Similarity=-0.060 Sum_probs=88.9
Q ss_pred CCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEe-eCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecCCCcEE
Q 005646 355 GEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCHVV 430 (686)
Q Consensus 355 ~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~-~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~~~~~ 430 (686)
.....|++.+.+ ++++-...+.|.+.++........+ ..-.....|++.|..+.++++-- ..+.|...++......
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 356788888854 4455556789999998765443333 24456788999994444444432 2466777777654333
Q ss_pred EEe-ccCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 431 DWV-DIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 431 ~~~-~~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
.+. ..-...+.|+++++++.|+.+ ...+.|..+|+.......... . ......+|++.. + ..+.+-...
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~----~----~~~~P~gi~~~~-~-~ly~td~~~ 233 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK----G----SLPHPFALTLFE-D-ILYWTDWST 233 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------------CCCEEESS-S-EEEEECTTT
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe----C----CCCCceEEEEeC-C-EEEEecCCC
Confidence 332 233457899999976666655 446789999987654332111 0 112234566654 2 344444456
Q ss_pred CcEEEEeC
Q 005646 509 SQVRILQG 516 (686)
Q Consensus 509 ~~I~iwd~ 516 (686)
+.|...|.
T Consensus 234 ~~V~~~d~ 241 (619)
T 3s94_A 234 HSILACNK 241 (619)
T ss_dssp CSEEEEES
T ss_pred CEEEEEEC
Confidence 66777664
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.95 Score=50.41 Aligned_cols=184 Identities=5% Similarity=-0.029 Sum_probs=114.5
Q ss_pred CCeeEEEeeCCC-EEE-EEECCCcEEEEECCCCee-eeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 355 GEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHC-LRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~-s~s~Dg~V~iWd~~~~~~-~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
.....|+|++.+ .|+ +-...+.|..+++..... ...+. .-.....|++.+..++++++-...+.|.+.++......
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 456789999855 554 444567888888876532 22333 23678999999845556666667789999999876543
Q ss_pred EEe-ccCCcEEEEEEccCCCEEEEEec--CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 431 DWV-DIRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 431 ~~~-~~~~~V~~v~~spdg~~l~~gs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
.+. ..-.....|++.|.+..|+.... .+.|...++........ . .......++|++.+.++.++++-..
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l----~----~~~~~~P~Glald~~~~~LY~aD~~ 191 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII----I----NSEIYWPNGLTLDYEEQKLYWADAK 191 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE----E----CSSCSSEEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE----E----eCCCCCCcEEEEEccCCEEEEEeCC
Confidence 333 33345678999997666665543 45677777764332210 1 1123568899999965666666667
Q ss_pred CCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 508 DSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 508 D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.+.|..++... .++++.+ ...++-...+.|...|..+++
T Consensus 192 ~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 192 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp TCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred CCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 78888887532 2333333 444444566788888887765
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=2.1 Score=43.88 Aligned_cols=110 Identities=11% Similarity=0.160 Sum_probs=67.8
Q ss_pred CeeEEEeeCCC-EEEEEEC---C------------CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEE-cCCc
Q 005646 356 EILDLSWSKNN-YLLSASI---D------------KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGK 418 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~---D------------g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~ 418 (686)
..+++.+.++| +.++... | ..-+||.+..+++......-...+.|+|+| +++.|+.+. ..+.
T Consensus 166 ~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~sp-Dg~~lYvadt~~~~ 244 (355)
T 3sre_A 166 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISP-DGKYVYIAELLAHK 244 (355)
T ss_dssp SEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEEESSEEEEEECT-TSSEEEEEEGGGTE
T ss_pred CCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecCCcccCcceECC-CCCEEEEEeCCCCe
Confidence 46788888888 4444321 1 223444444444333333445679999999 887766655 5788
Q ss_pred EEEEecCC-CcEE--EEeccCCcEEEEEEcc-CCCEEEEEecC-CcEEEEeCC
Q 005646 419 VRIWAVLS-CHVV--DWVDIRQIVTAVCYRP-DGQGGIVGSMM-GDCRFYNVS 466 (686)
Q Consensus 419 V~iwd~~~-~~~~--~~~~~~~~V~~v~~sp-dg~~l~~gs~d-g~i~iwd~~ 466 (686)
|+.|++.. +.+. ..+......-.+++.+ +|++.+++..+ +.|..|+..
T Consensus 245 I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 245 IHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred EEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 99999863 3332 2334456778899999 59877766544 345555543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.13 Score=48.57 Aligned_cols=136 Identities=10% Similarity=0.056 Sum_probs=83.7
Q ss_pred EEEEEECCCcEEEEECCCCe------eeeEeeC--CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCc
Q 005646 367 YLLSASIDKTVRLWRVGNDH------CLRVFPH--SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~------~~~~~~h--~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~ 438 (686)
+|+....| +|+.=-+..+. ....+.+ =..++.++|+| ++.+.+. .+|.++-.+..+.....+......
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 56677777 65554444443 2233443 25788999999 8887776 788887777766444444433333
Q ss_pred E--------EEEEEccCCCEEEEEecCCcEEEEeCCCCeee---eeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 439 V--------TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE---LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 439 V--------~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
| .++.|.|+|.+.++ .||.|+-++-.+.... .... .+. ..--..+..|.|.| ++.+.++.
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~-~vg---~~gw~~~~~lff~p-~G~Lyav~-- 152 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARAT-EVG---SGGWSGFKFLFFHP-NGYLYAVH-- 152 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSE-EEE---CSSGGGEEEEEECT-TSCEEEEE--
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceecccc-Eec---cCCCCceEEEEECC-CceEEEEe--
Confidence 3 78999999988877 6698887775332110 0000 000 11114578999999 77777777
Q ss_pred CCcEEEEe
Q 005646 508 DSQVRILQ 515 (686)
Q Consensus 508 D~~I~iwd 515 (686)
|+.+.-..
T Consensus 153 dg~lyr~~ 160 (236)
T 1tl2_A 153 GQQFYKAL 160 (236)
T ss_dssp TTEEEEEC
T ss_pred CCcEEecC
Confidence 77764443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.70 E-value=1.2 Score=45.59 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=21.6
Q ss_pred CceEEEEEeeCCCEEEEEeCCCcEEEEEe
Q 005646 251 GSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (686)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~vWd~ 279 (686)
...+.|+|.|+|++|+.+...|.|++++.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence 35689999999983444556788888874
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.39 E-value=6.5 Score=47.04 Aligned_cols=110 Identities=12% Similarity=0.123 Sum_probs=75.2
Q ss_pred CCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeee--EeeCCCCeEEEEEeecC-----CCEEEEEEc-CCcEEEEecCC
Q 005646 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLR--VFPHSNYVTCVHFNPVD-----DNYFISGSI-DGKVRIWAVLS 426 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~--~~~h~~~V~~v~fsp~~-----~~~l~sgs~-Dg~V~iwd~~~ 426 (686)
..|...+.+. .+++.++ ++.+.++++..++... .......|.|+++.|.. .++++.|.. |++|+|+++.+
T Consensus 514 ~~I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 514 KNISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 3577666554 3455444 5788888887664332 22356789999998732 479999996 99999999998
Q ss_pred CcEEEEeccC--CcEEEEEEcc--CCCEEEEEecCCcEEEEeCC
Q 005646 427 CHVVDWVDIR--QIVTAVCYRP--DGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 427 ~~~~~~~~~~--~~V~~v~~sp--dg~~l~~gs~dg~i~iwd~~ 466 (686)
.+.+...... ..+.++++.. ...+|.+|-.||.+.-+.+.
T Consensus 592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 7777555543 3555555543 33578899999998666654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.36 Score=50.29 Aligned_cols=146 Identities=12% Similarity=0.118 Sum_probs=94.6
Q ss_pred eCCC-EEEEEECCCcEEEEECCCCeeeeEeeCC-----CCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--------
Q 005646 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHS-----NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-------- 428 (686)
Q Consensus 363 s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~-----~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-------- 428 (686)
+.+| .|+.+- ++.||.-++......+.+... ..|..+..+| +|++|+..+ +..|.|-.+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 3444 444443 478888888755445555532 2688899999 999998886 5689999887332
Q ss_pred ----EEEEec-------cCCcEEEEEEcc---CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc-----ccCCCCCe
Q 005646 429 ----VVDWVD-------IRQIVTAVCYRP---DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK-----KKAPCKRI 489 (686)
Q Consensus 429 ----~~~~~~-------~~~~V~~v~~sp---dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~I 489 (686)
...... ...+|..+.|+| .+..|++-..|+.|++||+........ .+... .......|
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~---~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI---VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE---EESCCCSEEESCSSCCCE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc---chhccccccCCCcccceE
Confidence 011111 246799999999 456899999999999999986221111 11110 11223668
Q ss_pred EEEEEeCCCCCeEEEEe--CCCcEEEEe
Q 005646 490 TGFQFLPQDSSKVMVSC--ADSQVRILQ 515 (686)
Q Consensus 490 ~~l~fsp~~~~~l~~~s--~D~~I~iwd 515 (686)
.+++|.+ ++-.|.+.+ ..|.|+-.-
T Consensus 183 ~S~~Fg~-~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 183 TDLEFSK-DGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EEEEECT-TSSCEEEEECTTSCEEEEES
T ss_pred EEEEEcC-CCcEEEEEecCCCCCEEEEC
Confidence 8999998 566666644 667776553
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.64 Score=46.21 Aligned_cols=167 Identities=14% Similarity=0.079 Sum_probs=92.1
Q ss_pred EEEEEECC-----CcEEEEECCCCe---eeeE--eeCCCCeEEEEEeecCCCEEEEEEcC-----CcEEEEecCCCcEEE
Q 005646 367 YLLSASID-----KTVRLWRVGNDH---CLRV--FPHSNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVVD 431 (686)
Q Consensus 367 ~L~s~s~D-----g~V~iWd~~~~~---~~~~--~~h~~~V~~v~fsp~~~~~l~sgs~D-----g~V~iwd~~~~~~~~ 431 (686)
+++.|+.+ ..+.+||+.+.+ .... +.....-.+++. - ++.+++.|+.+ ..+.+||+.+.+-..
T Consensus 65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 142 (301)
T 2vpj_A 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-L-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM 142 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-E-CCEEEEEcccCCCcccceEEEEcCCCCeEEE
Confidence 55555544 468899988766 3322 222111122222 2 67777887754 358899998876443
Q ss_pred EeccCC---cEEEEEEccCCCEEEEEecC-----CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 432 WVDIRQ---IVTAVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 432 ~~~~~~---~V~~v~~spdg~~l~~gs~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
...... ...++.+ +++.++.|+.+ ..+.+||+.+++......+ .........+.+ ++.+++
T Consensus 143 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~------p~~r~~~~~~~~---~~~i~v 211 (301)
T 2vpj_A 143 LGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM------ATKRSGAGVALL---NDHIYV 211 (301)
T ss_dssp EEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCC------SSCCBSCEEEEE---TTEEEE
T ss_pred CCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCC------CcccccceEEEE---CCEEEE
Confidence 332221 1222222 67788887764 4589999988876543211 111111122222 456777
Q ss_pred EEeCC-----CcEEEEeCCcc----e-----------eEcCCCCEEEEEeCC-----CcEEEEeCCCC
Q 005646 504 VSCAD-----SQVRILQGPNV----I-----------GKYKDGKHIVSAGED-----SNVYMWNCIGH 546 (686)
Q Consensus 504 ~~s~D-----~~I~iwd~~~~----~-----------~~~~dg~~l~sgs~D-----g~V~iWd~~~~ 546 (686)
.|+.+ ..+.+||..+. + +..-+++.++.|+.+ ..|.+||+.+.
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred EeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 77764 46888887542 1 111166777777655 35677777664
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.25 E-value=1 Score=44.65 Aligned_cols=167 Identities=17% Similarity=0.171 Sum_probs=91.5
Q ss_pred EEEEEECC-----CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCC-----cEEEEecCCCcEEEEec
Q 005646 367 YLLSASID-----KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG-----KVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 367 ~L~s~s~D-----g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg-----~V~iwd~~~~~~~~~~~ 434 (686)
+++.|+.+ ..+.+||..+.+....-. ....-.+++. - ++.+++.|+.++ .+.+||+.+.+-.....
T Consensus 64 lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 141 (302)
T 2xn4_A 64 VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-L-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP 141 (302)
T ss_dssp EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC
T ss_pred EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-E-CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC
Confidence 55555543 358889988876543322 2111122222 2 677888888664 57888988876444332
Q ss_pred cCCc---EEEEEEccCCCEEEEEecC-------CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 435 IRQI---VTAVCYRPDGQGGIVGSMM-------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 435 ~~~~---V~~v~~spdg~~l~~gs~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
...+ ..++. -+++.++.|+.+ ..+.+||+.+++......+ ....... ++... ++.+++.
T Consensus 142 ~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~------p~~r~~~-~~~~~--~~~iyv~ 210 (302)
T 2xn4_A 142 MNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEM------STRRSGA-GVGVL--NNLLYAV 210 (302)
T ss_dssp CSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCC------SSCCBSC-EEEEE--TTEEEEE
T ss_pred CCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCC------ccccccc-cEEEE--CCEEEEE
Confidence 2221 22222 267777777653 4589999988876543211 1111111 22222 4577777
Q ss_pred EeCC-----CcEEEEeCCcc----e-----------eEcCCCCEEEEEeCCC-----cEEEEeCCCC
Q 005646 505 SCAD-----SQVRILQGPNV----I-----------GKYKDGKHIVSAGEDS-----NVYMWNCIGH 546 (686)
Q Consensus 505 ~s~D-----~~I~iwd~~~~----~-----------~~~~dg~~l~sgs~Dg-----~V~iWd~~~~ 546 (686)
|+.+ ..+.+||..+. + ...-+++.++.|+.++ .|.+||+.+.
T Consensus 211 GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 211 GGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 7764 36888886542 1 1111666777776553 3677777654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=3.3 Score=42.39 Aligned_cols=65 Identities=12% Similarity=-0.051 Sum_probs=37.5
Q ss_pred CCcEEEEEEc-------cCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE
Q 005646 436 RQIVTAVCYR-------PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (686)
Q Consensus 436 ~~~V~~v~~s-------pdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~ 505 (686)
...+..++|. .+|+++++.-..+.|...++.......... .+ ......++.++++.| ++.++++.
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~-~~---~~~~~~rp~~v~~~p-DG~lyv~~ 329 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS-TF---FKNVFGRLRDVVIDD-DGGILIST 329 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE-EE---CTTTSCCEEEEEECT-TSCEEEEE
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee-ee---ccCCCCCeeEEEECC-CCcEEEEE
Confidence 3457788883 577777766667788888887532111111 11 111235688999988 44444443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.79 Score=47.73 Aligned_cols=156 Identities=14% Similarity=0.140 Sum_probs=87.5
Q ss_pred CCCEEEEEEcCCcEEEEecCCCcEEEEeccC-----CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee-------
Q 005646 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIR-----QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD------- 473 (686)
Q Consensus 406 ~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~-----~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~------- 473 (686)
++..++.+- ++.||.-++............ ..|..+..+|+|++||..+ +..|.|-.+..+.....
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 555555544 577888777643322222222 2577899999999999884 45899999874321111
Q ss_pred e---eEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCC-C
Q 005646 474 A---EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEE-P 549 (686)
Q Consensus 474 ~---~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~-~ 549 (686)
. ...+......+..+|..+.|+|-. ..+..|++-..|+.|++||+..... +
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~-------------------------~~ds~LVVLtsD~~Ir~yDl~~s~~~P 163 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKS-------------------------YRDSCIVVLKEDDTITMFDILNSQEKP 163 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTB-------------------------GGGCEEEEEETTSCEEEEETTCTTSCC
T ss_pred cceeEEEcCCcccCCCCceeEEEecccc-------------------------CCCCeEEEEecCCEEEEEEcccCCCCC
Confidence 0 111111111135678888898821 1567788888888999999886331 2
Q ss_pred Ccccccccccc--ccccC-CcEEEecCCCCcCCCCC--CCCcccc
Q 005646 550 AHDQAKTIRSL--ERFTT-NASIAIPWCGLKCGNAE--KEPQLHV 589 (686)
Q Consensus 550 ~~~~~~~~~~~--~~~~~-~~~v~~s~~g~~~~~~~--~g~~l~~ 589 (686)
.... +....+ ..... ..+++|..+|.++|-.. .+..+..
T Consensus 164 ~~L~-k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 164 IVLN-KPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEES-CCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred cchh-ccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 2111 111111 11112 45777877777777633 4444433
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=94.89 E-value=3.5 Score=44.40 Aligned_cols=96 Identities=13% Similarity=0.030 Sum_probs=60.8
Q ss_pred EEEEecCC----C-cEEEEeccCCcEEEEEEccCCCEEEEEec-CCcEEEEeCCCC------ee-eeeeeEEeeccccCC
Q 005646 419 VRIWAVLS----C-HVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDN------HL-ELDAEICVHSKKKAP 485 (686)
Q Consensus 419 V~iwd~~~----~-~~~~~~~~~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~------~~-~~~~~~~~~~~~~~~ 485 (686)
|.+.|.+. + ..+.++........+.++|||+++++++. +.++.++|+... ++ .....+. . ....
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~--a-e~e~ 376 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIV--G-EPEL 376 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEE--E-CCBC
T ss_pred eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceE--e-eccC
Confidence 55555554 1 23344455556678999999999988765 788999998742 11 0100000 0 0112
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
.......+|.+ ++....+-.-|++|.-|++..
T Consensus 377 GlGPlHt~Fd~-~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 377 GLGPLHTTFDG-RGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CSCEEEEEECS-SSEEEEEETTTTEEEEEEHHH
T ss_pred CCcccEEEECC-CCceEeeeeecceEEEEeccH
Confidence 34577889999 666666667999999998653
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.79 E-value=1.3 Score=44.03 Aligned_cols=102 Identities=7% Similarity=0.064 Sum_probs=59.2
Q ss_pred EEEEEECC------CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEc---------CCcEEEEecCCCcE
Q 005646 367 YLLSASID------KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSI---------DGKVRIWAVLSCHV 429 (686)
Q Consensus 367 ~L~s~s~D------g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~---------Dg~V~iwd~~~~~~ 429 (686)
+++.|+.+ ..+.+||..+.+....-. ....-.+++. - ++.+++.|+. -..+.+||+.+.+-
T Consensus 104 iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W 181 (306)
T 3ii7_A 104 IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-A-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW 181 (306)
T ss_dssp EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEECCEESCTTTCEECCCEEEEETTTTEE
T ss_pred EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-E-CCEEEEECCCCCCCCcccccceEEEeCCCCCeE
Confidence 55556544 468899998886544322 1111122222 2 6677777764 34588999988764
Q ss_pred EEEeccCCc---EEEEEEccCCCEEEEEecC-----CcEEEEeCCCCeeee
Q 005646 430 VDWVDIRQI---VTAVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLEL 472 (686)
Q Consensus 430 ~~~~~~~~~---V~~v~~spdg~~l~~gs~d-----g~i~iwd~~~~~~~~ 472 (686)
........+ ...+.+ ++++++.|+.+ ..+.+||+.+++...
T Consensus 182 ~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 230 (306)
T 3ii7_A 182 TELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM 230 (306)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEE
T ss_pred EECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEE
Confidence 443322211 222222 67777777654 458999998877543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.57 E-value=1.9 Score=43.08 Aligned_cols=158 Identities=9% Similarity=0.029 Sum_probs=84.6
Q ss_pred EEEEECCCCeeeeEeeCCCCe--EEEEEeecCCCEEEEEEcC--------CcEEEEecCCCcEEEEeccCCc--EEEEEE
Q 005646 377 VRLWRVGNDHCLRVFPHSNYV--TCVHFNPVDDNYFISGSID--------GKVRIWAVLSCHVVDWVDIRQI--VTAVCY 444 (686)
Q Consensus 377 V~iWd~~~~~~~~~~~h~~~V--~~v~fsp~~~~~l~sgs~D--------g~V~iwd~~~~~~~~~~~~~~~--V~~v~~ 444 (686)
+.+||..+.+....-....+- .+++.. ++.+++.|+.+ ..+.+||+.+.+-........+ -.+++
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~- 145 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL- 145 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE-
Confidence 778888887653322211111 122221 56777777743 4588999988754332222211 11122
Q ss_pred ccCCCEEEEEec------CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCC-----cEEE
Q 005646 445 RPDGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS-----QVRI 513 (686)
Q Consensus 445 spdg~~l~~gs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~-----~I~i 513 (686)
.-+++.++.|+. -..+.+||+.+++......+ ......-. +... ++.+++.|+.++ .+.+
T Consensus 146 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~------p~~r~~~~-~~~~--~~~iyv~GG~~~~~~~~~~~~ 216 (315)
T 4asc_A 146 SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM------QTARSLFG-ATVH--DGRIIVAAGVTDTGLTSSAEV 216 (315)
T ss_dssp EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCC------SSCCBSCE-EEEE--TTEEEEEEEECSSSEEEEEEE
T ss_pred EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCC------CCchhceE-EEEE--CCEEEEEeccCCCCccceEEE
Confidence 246677778776 24699999998876543211 11111112 2222 457778877654 4777
Q ss_pred EeCCcc----e-----------eEcCCCCEEEEEeCCC--------------cEEEEeCCCC
Q 005646 514 LQGPNV----I-----------GKYKDGKHIVSAGEDS--------------NVYMWNCIGH 546 (686)
Q Consensus 514 wd~~~~----~-----------~~~~dg~~l~sgs~Dg--------------~V~iWd~~~~ 546 (686)
||..+. + +..-+++.++.|+.++ .|.+||+.+.
T Consensus 217 yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 217 YSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred EECCCCeEEECCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 886542 1 1111667777777542 3667777654
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.46 Score=48.35 Aligned_cols=92 Identities=10% Similarity=0.041 Sum_probs=55.4
Q ss_pred ECCCcEEEEECCCCeeeeEee-----CCCCeEEEEEee-c-------CCCEEEEEEcCCcEEEEecCCCcEEEEeccCCc
Q 005646 372 SIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNP-V-------DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~-----h~~~V~~v~fsp-~-------~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~ 438 (686)
+.||.|..++..+|.....+. ...++.. .=.| . .+..+++|+.+|++.-.|+.+|+.+.......+
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~ 142 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK 142 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence 578999999988886555444 2233332 1011 0 456889999999999999999999866654432
Q ss_pred EE------EEEEc-------cCCCEEEEEecCCcEEEEe
Q 005646 439 VT------AVCYR-------PDGQGGIVGSMMGDCRFYN 464 (686)
Q Consensus 439 V~------~v~~s-------pdg~~l~~gs~dg~i~iwd 464 (686)
.. ..|.. ..+..++.|..+..+.+.+
T Consensus 143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp CC--------------------CCEEEEEEEEEECEECC
T ss_pred cccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence 11 11111 1234666666666666655
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.43 E-value=2.1 Score=42.33 Aligned_cols=138 Identities=12% Similarity=0.119 Sum_probs=74.6
Q ss_pred EEEEEECCC-----cEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcC-------CcEEEEecCCCcEEEE
Q 005646 367 YLLSASIDK-----TVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID-------GKVRIWAVLSCHVVDW 432 (686)
Q Consensus 367 ~L~s~s~Dg-----~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~D-------g~V~iwd~~~~~~~~~ 432 (686)
.++.|+.++ .+.+||+.+.+....-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...
T Consensus 111 iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~ 188 (302)
T 2xn4_A 111 LYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI 188 (302)
T ss_dssp EEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC
Confidence 555555443 57888988876544322 22111222222 66777777653 3588999988764433
Q ss_pred eccCC---cEEEEEEccCCCEEEEEecC-----CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 433 VDIRQ---IVTAVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 433 ~~~~~---~V~~v~~spdg~~l~~gs~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
..... ....+.+ ++++++.|+.+ ..+.+||+.+++......+. ...... ++... ++.+++.
T Consensus 189 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~------~~r~~~-~~~~~--~~~i~v~ 257 (302)
T 2xn4_A 189 AEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN------MCRRNA-GVCAV--NGLLYVV 257 (302)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS------SCCBSC-EEEEE--TTEEEEE
T ss_pred CCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC------CccccC-eEEEE--CCEEEEE
Confidence 22221 1222222 67788888764 46999999888765432111 011111 12222 4567777
Q ss_pred EeCCC-----cEEEEeCC
Q 005646 505 SCADS-----QVRILQGP 517 (686)
Q Consensus 505 ~s~D~-----~I~iwd~~ 517 (686)
|+.++ .+.+||..
T Consensus 258 GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 258 GGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp CCBCSSSBCCCEEEEETT
T ss_pred CCcCCCcccccEEEEcCC
Confidence 77653 36666654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=94.13 E-value=6.5 Score=41.07 Aligned_cols=201 Identities=11% Similarity=0.167 Sum_probs=121.0
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC-------CCcEEEE
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-------DGVVRLW 277 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-------Dg~I~vW 277 (686)
++.-+..-....+.-=.+..|.-|++........-......|. ...|..-..+++.++++..|- .|.+.+|
T Consensus 107 ~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLY 184 (494)
T 1bpo_A 107 DVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184 (494)
T ss_dssp CCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGT--TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred CceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcc--cceEEEEEECCCCCeEEEEeecccCCcccceEEEe
Confidence 4444444333333333466799999865333222222222333 356888888889988775542 2444455
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCe
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 357 (686)
.++.+ .-+.+.||.+.-
T Consensus 185 S~er~---------------------------------------------------------------~sQ~ieGhaa~F 201 (494)
T 1bpo_A 185 SVDRK---------------------------------------------------------------VSQPIEGHAASF 201 (494)
T ss_dssp ESTTC---------------------------------------------------------------CEEEECCSEEEE
T ss_pred ecccc---------------------------------------------------------------ccchheeeeeee
Confidence 44332 234455665544
Q ss_pred eEEEeeCCC----EEEEEEC---CCcEEEEECCCC---e------eeeE-ee---CCCCeEEEEEeecCCCEEEEEEcCC
Q 005646 358 LDLSWSKNN----YLLSASI---DKTVRLWRVGND---H------CLRV-FP---HSNYVTCVHFNPVDDNYFISGSIDG 417 (686)
Q Consensus 358 ~~l~~s~~~----~L~s~s~---Dg~V~iWd~~~~---~------~~~~-~~---h~~~V~~v~fsp~~~~~l~sgs~Dg 417 (686)
..+....+. .+..+.. .+.++|-++... . .+.. +. ..+...+++.++ ....++.-..-|
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G 280 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYG 280 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTS
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCc
Confidence 444332211 2333332 267888888543 1 1111 11 356778899999 888999999999
Q ss_pred cEEEEecCCCcEEEEecc-CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee
Q 005646 418 KVRIWAVLSCHVVDWVDI-RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 418 ~V~iwd~~~~~~~~~~~~-~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
.|.+||+.++.++..... ...|...+.......++.-...|.|.--.++...+.
T Consensus 281 ~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 281 YIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred eEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 999999999999865554 455666666666667777778898888777766543
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=93.78 E-value=3.3 Score=41.12 Aligned_cols=158 Identities=11% Similarity=0.024 Sum_probs=86.1
Q ss_pred CcEEEEECCCCeeeeEee--CC-CCeEEEEEeecCCCEEEEEEcC-----CcEEEEecCCCcEEEEeccC---CcEEEEE
Q 005646 375 KTVRLWRVGNDHCLRVFP--HS-NYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVVDWVDIR---QIVTAVC 443 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~--h~-~~V~~v~fsp~~~~~l~sgs~D-----g~V~iwd~~~~~~~~~~~~~---~~V~~v~ 443 (686)
..+.+||+.+.+....-. .. ....++.+ ++.+++.|+.+ ..+.+||+.+.+-....... ....++.
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 166 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV 166 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE
Confidence 468889988876443322 11 11122222 66777777654 35888999887644332222 1122233
Q ss_pred EccCCCEEEEEecC-----CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC-----CcEEE
Q 005646 444 YRPDGQGGIVGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----SQVRI 513 (686)
Q Consensus 444 ~spdg~~l~~gs~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D-----~~I~i 513 (686)
+ ++++++.|+.+ ..+.+||+.+++......+ .........+.+ ++.+++.|+.+ ..+.+
T Consensus 167 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~------p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~ 235 (308)
T 1zgk_A 167 L--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM------NTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVER 235 (308)
T ss_dssp E--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC------SSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEE
T ss_pred E--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC------CCccccceEEEE---CCEEEEEeCCCCCCccceEEE
Confidence 3 67777777764 4589999988876543211 111111222222 45677777765 56888
Q ss_pred EeCCcce---------------eEcCCCCEEEEEeCC-----CcEEEEeCCCC
Q 005646 514 LQGPNVI---------------GKYKDGKHIVSAGED-----SNVYMWNCIGH 546 (686)
Q Consensus 514 wd~~~~~---------------~~~~dg~~l~sgs~D-----g~V~iWd~~~~ 546 (686)
||..+.. +..-++++++.|+.+ ..|.+||+.+.
T Consensus 236 yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 236 YDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp EETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred EeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 8865420 111156666666643 34666666553
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=93.78 E-value=2.2 Score=45.44 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=22.7
Q ss_pred CCceEEEEEeeCCCEEEEEeCCCcEEEEEeecC
Q 005646 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~ 282 (686)
-...+.|+|.|+|+++++--..+.|++++..++
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g 58 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESG 58 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence 345789999999997776544346777765433
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.69 E-value=4.2 Score=40.03 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=61.3
Q ss_pred EEEEEECC-----CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcC-----CcEEEEecCCCcEEEEec
Q 005646 367 YLLSASID-----KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 367 ~L~s~s~D-----g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~D-----g~V~iwd~~~~~~~~~~~ 434 (686)
+++.|+.+ ..+.+||+.+.+....-. ....-.+++. - ++.+++.|+.+ ..|.+||+.+.+-.....
T Consensus 162 iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 239 (301)
T 2vpj_A 162 IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-L-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS 239 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-E-CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC
Confidence 55555543 468899998876544322 2211112222 2 67788888765 468999998876544332
Q ss_pred cCC---cEEEEEEccCCCEEEEEecC-----CcEEEEeCCCCeeeee
Q 005646 435 IRQ---IVTAVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLELD 473 (686)
Q Consensus 435 ~~~---~V~~v~~spdg~~l~~gs~d-----g~i~iwd~~~~~~~~~ 473 (686)
... ...++.+ +++.++.|+.+ ..+.+||+.+++....
T Consensus 240 ~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 240 MTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWEVV 284 (301)
T ss_dssp CSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred CCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence 221 1222222 67788888765 4588999988876543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=2.2 Score=43.64 Aligned_cols=99 Identities=10% Similarity=0.028 Sum_probs=61.9
Q ss_pred CCCeeEEEeeCCCEEEEEECCCcEEEEECCCCe-eeeEee----CCCCeEEEEEeecC---CCEEEEEEc----C----C
Q 005646 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH-CLRVFP----HSNYVTCVHFNPVD---DNYFISGSI----D----G 417 (686)
Q Consensus 354 ~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~-~~~~~~----h~~~V~~v~fsp~~---~~~l~sgs~----D----g 417 (686)
-.....|+|.|+|.|+.+..++.|++++ ..++ .+..+. .......|+|+| + +..|+.+.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcce
Confidence 3456899999999777778889999997 3454 222211 235689999999 5 444444433 3 5
Q ss_pred cEEEEecCCC-------cEE-EEec--cCCcEEEEEEccCCCEEEEE
Q 005646 418 KVRIWAVLSC-------HVV-DWVD--IRQIVTAVCYRPDGQGGIVG 454 (686)
Q Consensus 418 ~V~iwd~~~~-------~~~-~~~~--~~~~V~~v~~spdg~~l~~g 454 (686)
.|..|+.... +.+ .-.. .......++|.|||.++++-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence 6777777654 111 1111 11124679999999766653
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.42 E-value=2.5 Score=43.27 Aligned_cols=105 Identities=11% Similarity=0.123 Sum_probs=62.2
Q ss_pred CCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec------cCCcEEEEEEccC---CCEEEEEec-C-----Cc
Q 005646 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD------IRQIVTAVCYRPD---GQGGIVGSM-M-----GD 459 (686)
Q Consensus 395 ~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~------~~~~V~~v~~spd---g~~l~~gs~-d-----g~ 459 (686)
.....|+|.| +++++++ ..+|.|++++ ++....... .......|+++|+ +..|+++.. . +.
T Consensus 31 ~~P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLP-DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECT-TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcC-CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 4568999999 8885554 5679999998 444322211 2346889999998 555555543 2 67
Q ss_pred EEEEeCCCCeeeeeeeEEeeccc--cCCCCCeEEEEEeCCCCCeEEEE
Q 005646 460 CRFYNVSDNHLELDAEICVHSKK--KAPCKRITGFQFLPQDSSKVMVS 505 (686)
Q Consensus 460 i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~I~~l~fsp~~~~~l~~~ 505 (686)
|..|+.....+... +..+.... .........++|.| ++.++++.
T Consensus 107 v~r~~~~~~~~~~~-~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~ 152 (352)
T 2ism_A 107 VVRLRHLGERGVLD-RVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTT 152 (352)
T ss_dssp EEEEEECSSCEEEE-EEEEEEECCCTTCCCCCCCEEECT-TSCEEEEC
T ss_pred EEEEEeCCCCcCce-EEEEEeCCCCCCCCcCCceEEECC-CCCEEEEE
Confidence 88888875432211 11111111 11122346899999 66655554
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.30 E-value=3.9 Score=40.77 Aligned_cols=130 Identities=13% Similarity=0.105 Sum_probs=69.8
Q ss_pred EEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcC-------CcEEEEecCCCcEEEEeccCCcE--EEEEEc
Q 005646 377 VRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID-------GKVRIWAVLSCHVVDWVDIRQIV--TAVCYR 445 (686)
Q Consensus 377 V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~D-------g~V~iwd~~~~~~~~~~~~~~~V--~~v~~s 445 (686)
+.+||..+.+....-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-........+. .+++.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~- 156 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS- 156 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-
Confidence 7788888776543322 11111222222 67788888864 34888898887644433322221 11222
Q ss_pred cCCCEEEEEec------CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC-----CcEEEE
Q 005646 446 PDGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----SQVRIL 514 (686)
Q Consensus 446 pdg~~l~~gs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D-----~~I~iw 514 (686)
.+++.++.|+. -..+.+||+.+++......+ ...... .++... ++.+++.|+.+ ..+.+|
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~------p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~y 227 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM------KTPRSM-FGVAIH--KGKIVIAGGVTEDGLSASVEAF 227 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCC------SSCCBS-CEEEEE--TTEEEEEEEEETTEEEEEEEEE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCC------CCCccc-ceEEEE--CCEEEEEcCcCCCCccceEEEE
Confidence 46777777764 24599999998876543211 111111 122222 45777777654 346677
Q ss_pred eCCc
Q 005646 515 QGPN 518 (686)
Q Consensus 515 d~~~ 518 (686)
|..+
T Consensus 228 d~~~ 231 (318)
T 2woz_A 228 DLKT 231 (318)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 7653
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.1 Score=49.26 Aligned_cols=100 Identities=11% Similarity=0.072 Sum_probs=64.5
Q ss_pred CeeEEEeeCCCEEEEEECCCcEEEEECCCCeee------eEeeC--CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC
Q 005646 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCL------RVFPH--SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~------~~~~h--~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~ 427 (686)
.+.+++|+|++.|... .++.+.-.+..+.... ..+.. -..-.++.|.| ++.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 6779999998866665 6776666555442211 12211 01147899998 8887777 5799988887543
Q ss_pred cEEEEec--------cCCcEEEEEEccCCCEEEEEecCCcEE
Q 005646 428 HVVDWVD--------IRQIVTAVCYRPDGQGGIVGSMMGDCR 461 (686)
Q Consensus 428 ~~~~~~~--------~~~~V~~v~~spdg~~l~~gs~dg~i~ 461 (686)
..-.|.. .-..+..|.+.|+|.+.++. ||.++
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 2222211 11357999999999888777 77754
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=92.82 E-value=4.3 Score=41.32 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=26.2
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
.-..-+.|+|.|||.++++--..|.|++++..+++
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~ 64 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR 64 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc
Confidence 34567899999999977776548889888754443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=92.78 E-value=11 Score=39.46 Aligned_cols=166 Identities=10% Similarity=0.101 Sum_probs=99.9
Q ss_pred CeeEEEeeCCCEEEEEECCCcEEEEECCC-CeeeeEee-C----CCCeEEEEEeecCCCEEEEEEc-------CCcEEEE
Q 005646 356 EILDLSWSKNNYLLSASIDKTVRLWRVGN-DHCLRVFP-H----SNYVTCVHFNPVDDNYFISGSI-------DGKVRIW 422 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~-~~~~~~~~-h----~~~V~~v~fsp~~~~~l~sgs~-------Dg~V~iw 422 (686)
+|.-=.|-.+..|+..+ +..|.-|++.. ..+.+.|. | ...|..-..++ +.++++..+. .|.+.+|
T Consensus 107 ~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLY 184 (494)
T 1bpo_A 107 DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLY 184 (494)
T ss_dssp CCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEE
T ss_pred CceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEe
Confidence 45555665555444443 56899999864 45666665 2 45677777777 7777665543 4789999
Q ss_pred ecCCCcEEEEeccCCcEEEEEEccC---CCEEEEEec---CCcEEEEeCCCC---eeee-eeeEEeeccccCCCCCeEEE
Q 005646 423 AVLSCHVVDWVDIRQIVTAVCYRPD---GQGGIVGSM---MGDCRFYNVSDN---HLEL-DAEICVHSKKKAPCKRITGF 492 (686)
Q Consensus 423 d~~~~~~~~~~~~~~~V~~v~~spd---g~~l~~gs~---dg~i~iwd~~~~---~~~~-~~~~~~~~~~~~~~~~I~~l 492 (686)
....+......+|-..-..+.+.-+ .+.++.+.. .++++|-++... ...+ .....+.-.......-..++
T Consensus 185 S~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvam 264 (494)
T 1bpo_A 185 SVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 264 (494)
T ss_dssp ESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEE
T ss_pred eccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEE
Confidence 9987766555555443322222111 123333433 278999998532 1111 12222222223445556788
Q ss_pred EEeCCCCCeEEEEeCCCcEEEEeCCcceeEcC
Q 005646 493 QFLPQDSSKVMVSCADSQVRILQGPNVIGKYK 524 (686)
Q Consensus 493 ~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~ 524 (686)
+.++ .-..+..-+.-|.|.+||..+..+.+.
T Consensus 265 qvs~-kygviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 265 QISE-KHDVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp EEET-TTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred Eecc-cCCEEEEEecCceEEEEecccceeeee
Confidence 8888 667888888999999999988755443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=92.51 E-value=10 Score=38.55 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=35.2
Q ss_pred CcEEEEEEcc-------CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 437 QIVTAVCYRP-------DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 437 ~~V~~v~~sp-------dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
..+..++|.. +|+++++.-..+.|...++..++...... +. .....++.++++.| ++.+++
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~--~~---~~~~~rp~~v~~~p-dG~lyv 338 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR--IL---TDRGQRIRDVRTGP-DGYLYV 338 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--ES---GGGCCCEEEEEECT-TSCEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE--cc---cCCCCceeEEEECC-CCcEEE
Confidence 4566777753 56677766667778888877554322111 11 11235688899888 444333
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.43 E-value=6 Score=39.01 Aligned_cols=95 Identities=11% Similarity=0.147 Sum_probs=57.0
Q ss_pred CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcC-----CcEEEEecCCCcEEEEeccC---CcEEEEEE
Q 005646 375 KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVVDWVDIR---QIVTAVCY 444 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~D-----g~V~iwd~~~~~~~~~~~~~---~~V~~v~~ 444 (686)
..+.+||+.+.+....-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-....... ....++.+
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 246 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV 246 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE
T ss_pred ceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE
Confidence 458899998886543322 22111222222 56778887754 35889999887644332221 12223333
Q ss_pred ccCCCEEEEEecC-----CcEEEEeCCCCeeeee
Q 005646 445 RPDGQGGIVGSMM-----GDCRFYNVSDNHLELD 473 (686)
Q Consensus 445 spdg~~l~~gs~d-----g~i~iwd~~~~~~~~~ 473 (686)
++++++.|+.+ ..+.+||+.+++....
T Consensus 247 --~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~ 278 (306)
T 3ii7_A 247 --GSIVYVLAGFQGVGRLGHILEYNTETDKWVAN 278 (306)
T ss_dssp --TTEEEEEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred --CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence 77788888754 5689999998876653
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.15 E-value=8.8 Score=38.04 Aligned_cols=94 Identities=14% Similarity=0.136 Sum_probs=55.9
Q ss_pred CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEc-C-----CcEEEEecCCCcEEEEeccCC---cEEEEE
Q 005646 375 KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSI-D-----GKVRIWAVLSCHVVDWVDIRQ---IVTAVC 443 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~-D-----g~V~iwd~~~~~~~~~~~~~~---~V~~v~ 443 (686)
..+.+||..+.+....-. ....-.+++. - ++.+++.|+. + ..+.+||+.+.+-........ ...++.
T Consensus 117 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 194 (315)
T 4asc_A 117 DSVMCYDRLSFKWGESDPLPYVVYGHTVLS-H-MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV 194 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred ceEEEECCCCCcEeECCCCCCcccceeEEE-E-CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE
Confidence 458899998876433222 2211122222 2 6778888876 2 468999998875443322221 122222
Q ss_pred EccCCCEEEEEecCC-----cEEEEeCCCCeeee
Q 005646 444 YRPDGQGGIVGSMMG-----DCRFYNVSDNHLEL 472 (686)
Q Consensus 444 ~spdg~~l~~gs~dg-----~i~iwd~~~~~~~~ 472 (686)
+ +++.++.|+.++ .+.+||+.+++...
T Consensus 195 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 195 H--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp E--TTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred E--CCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 2 677888887655 48899998887654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=89.28 E-value=10 Score=37.43 Aligned_cols=102 Identities=9% Similarity=0.091 Sum_probs=59.4
Q ss_pred EEEEEECC-----CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcC-----CcEEEEecCCCcEEEEec
Q 005646 367 YLLSASID-----KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 367 ~L~s~s~D-----g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~D-----g~V~iwd~~~~~~~~~~~ 434 (686)
+++.|+.+ ..+.+||+.+.+....-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-.....
T Consensus 171 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 248 (308)
T 1zgk_A 171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 248 (308)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC
Confidence 55555543 458899988876543322 11111222222 67788888765 468999998876443322
Q ss_pred cCC---cEEEEEEccCCCEEEEEecC-----CcEEEEeCCCCeeee
Q 005646 435 IRQ---IVTAVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLEL 472 (686)
Q Consensus 435 ~~~---~V~~v~~spdg~~l~~gs~d-----g~i~iwd~~~~~~~~ 472 (686)
... ....+. -+++.++.|+.+ ..+.+||+.+++...
T Consensus 249 ~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 249 MKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE 292 (308)
T ss_dssp CSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred CCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence 221 122222 267788887754 458899998877653
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=89.21 E-value=18 Score=35.68 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=57.3
Q ss_pred EEEEEECC-------CcEEEEECCCCeeeeEeeCCCC--eEEEEEeecCCCEEEEEEcC------CcEEEEecCCCcEEE
Q 005646 367 YLLSASID-------KTVRLWRVGNDHCLRVFPHSNY--VTCVHFNPVDDNYFISGSID------GKVRIWAVLSCHVVD 431 (686)
Q Consensus 367 ~L~s~s~D-------g~V~iWd~~~~~~~~~~~h~~~--V~~v~fsp~~~~~l~sgs~D------g~V~iwd~~~~~~~~ 431 (686)
.++.|+.+ ..+.+||..+.+....-....+ -.+++. . ++.+++.|+.+ ..+.+||+.+.+-..
T Consensus 112 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~ 189 (318)
T 2woz_A 112 IYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-H-NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD 189 (318)
T ss_dssp EEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-E-TTEEEEECCEESSSCBCCCEEEEETTTTEEEE
T ss_pred EEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-E-CCEEEEEcCCCCCCCccceEEEEcCCCCEEEE
Confidence 55555543 3478889888765443221111 112222 2 67777777642 358999998876443
Q ss_pred EeccCC---cEEEEEEccCCCEEEEEecC-----CcEEEEeCCCCeeee
Q 005646 432 WVDIRQ---IVTAVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLEL 472 (686)
Q Consensus 432 ~~~~~~---~V~~v~~spdg~~l~~gs~d-----g~i~iwd~~~~~~~~ 472 (686)
...... ...++. -+++.++.|+.+ ..+.+||+.+++...
T Consensus 190 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 236 (318)
T 2woz_A 190 LAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEV 236 (318)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEE
T ss_pred CCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEE
Confidence 322221 122222 267777887654 347789988876543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=88.95 E-value=4.5 Score=41.15 Aligned_cols=112 Identities=8% Similarity=-0.066 Sum_probs=63.8
Q ss_pred CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe-------ccCCcEEEEEEccC---CCEEEEE---ecCCc
Q 005646 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-------DIRQIVTAVCYRPD---GQGGIVG---SMMGD 459 (686)
Q Consensus 393 h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-------~~~~~V~~v~~spd---g~~l~~g---s~dg~ 459 (686)
.-...+.|+|.| ++.+|++--..|+|++++..+++..... ........|+++|+ +..|.+. ..++.
T Consensus 30 gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 345678999999 8887777655899999987666543221 12456889999995 3445443 23455
Q ss_pred EEEEeCCCCe----eeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 460 CRFYNVSDNH----LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 460 i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
|.-|.+.... .....+..+..........-..|.|.| ++.++++.+
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~G 158 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTG 158 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECB
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEEC
Confidence 6666665421 111111111111111122345688988 555555543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=88.43 E-value=37 Score=38.28 Aligned_cols=146 Identities=8% Similarity=0.127 Sum_probs=87.5
Q ss_pred CeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
.|.++.. .++.|..++.+ -|..+|..+++...... ....|.++...+ ++.+.+ |+.+ -|..++..+++..
T Consensus 104 ~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~ 178 (758)
T 3ott_A 104 DVRTMAL-QGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTK-DNQIYV-GTYN-GLCRYIPSNGKFE 178 (758)
T ss_dssp CEEEEEE-ETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECT-TCCEEE-EETT-EEEEEETTTTEEE
T ss_pred eEEEEEe-cCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcC-CCCEEE-EeCC-CHhhCccCCCceE
Confidence 4555544 35666667766 67888987765432211 245688888766 565554 5544 5778888777654
Q ss_pred EEecc------CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 431 DWVDI------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 431 ~~~~~------~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
..... ...|.++...+++..|.+|+. +-+..||..+++......+ . ...|.++...+ + ..|.+
T Consensus 179 ~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l--~------~~~i~~i~~d~-~-g~lWi 247 (758)
T 3ott_A 179 GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAF--H------NNSIKSLALDG-N-GDLLA 247 (758)
T ss_dssp EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEE--E------EEEEEEEEECT-T-CCEEE
T ss_pred EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCC--C------CCeEEEEEEcC-C-CCEEE
Confidence 32211 124888888887776666764 4688899877664322111 1 12377776655 3 34555
Q ss_pred EeCCCcEEEEeCCc
Q 005646 505 SCADSQVRILQGPN 518 (686)
Q Consensus 505 ~s~D~~I~iwd~~~ 518 (686)
++. +-+.+++..+
T Consensus 248 gT~-~Gl~~~~~~~ 260 (758)
T 3ott_A 248 GTD-NGLYVYHNDT 260 (758)
T ss_dssp EET-TEEEEECCTT
T ss_pred EeC-CceeEEecCC
Confidence 554 4677887654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=88.24 E-value=4.4 Score=43.01 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=39.7
Q ss_pred CCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec---------cCCcEEEEEEccC---CCEEEEEe
Q 005646 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---------IRQIVTAVCYRPD---GQGGIVGS 455 (686)
Q Consensus 395 ~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~---------~~~~V~~v~~spd---g~~l~~gs 455 (686)
...+.|+|.| +++++++-...+.|++++..++....... ....+..|+|+|+ +..|.+..
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 4668999999 88877765444579888876555432221 2345779999995 55555544
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=87.76 E-value=25 Score=39.45 Aligned_cols=104 Identities=16% Similarity=0.226 Sum_probs=62.5
Q ss_pred CC-EEEEEECC------CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCC--cEEEEecCCCcEEEEe
Q 005646 365 NN-YLLSASID------KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG--KVRIWAVLSCHVVDWV 433 (686)
Q Consensus 365 ~~-~L~s~s~D------g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg--~V~iwd~~~~~~~~~~ 433 (686)
++ .++.|+.+ ..+.+||..+.+....-. ....-.+++... ++.+++.|+.++ .+.+||+.+..-....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 45 55555543 357889988876543322 222222333323 788888888765 6999999887644322
Q ss_pred c------cCCcEEEEEEccC-CCEEEEEec--C-----CcEEEEeCCCCe
Q 005646 434 D------IRQIVTAVCYRPD-GQGGIVGSM--M-----GDCRFYNVSDNH 469 (686)
Q Consensus 434 ~------~~~~V~~v~~spd-g~~l~~gs~--d-----g~i~iwd~~~~~ 469 (686)
. ......++.+..+ ++.++.|+. + +.+.+||+.++.
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 1 1222334566655 777777766 2 458899998876
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.74 E-value=13 Score=37.58 Aligned_cols=94 Identities=5% Similarity=0.044 Sum_probs=52.1
Q ss_pred CcEEEEECCCCeeeeEeeC---CCCeEEEEEeecCCCEEEEEEcC-----------------------------------
Q 005646 375 KTVRLWRVGNDHCLRVFPH---SNYVTCVHFNPVDDNYFISGSID----------------------------------- 416 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~h---~~~V~~v~fsp~~~~~l~sgs~D----------------------------------- 416 (686)
..+.+||+.+.+....-.. ...-.+++. . ++.+++.|+.+
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED 163 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred ccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence 4688999988765433221 111112222 3 77888888865
Q ss_pred ----CcEEEEecCCCcEEEEeccCC--cE-EEEEEccCCCEEEEEec------CCcEEEEeC--CCCeee
Q 005646 417 ----GKVRIWAVLSCHVVDWVDIRQ--IV-TAVCYRPDGQGGIVGSM------MGDCRFYNV--SDNHLE 471 (686)
Q Consensus 417 ----g~V~iwd~~~~~~~~~~~~~~--~V-~~v~~spdg~~l~~gs~------dg~i~iwd~--~~~~~~ 471 (686)
..+.+||+.+.+-........ .- .+++. -++++++.|+. ...+.+||+ .+....
T Consensus 164 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~ 232 (357)
T 2uvk_A 164 YFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN 232 (357)
T ss_dssp GCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEE
T ss_pred cCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEE
Confidence 478999998876443332221 11 22222 26667777764 345778887 554443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=87.10 E-value=33 Score=41.53 Aligned_cols=166 Identities=10% Similarity=0.104 Sum_probs=88.3
Q ss_pred CeeEEEeeCCCEEEEEECCCcEEEEECCC-CeeeeEee-C----CCCeEEEEEeecCCCEEEEEE-------cCCcEEEE
Q 005646 356 EILDLSWSKNNYLLSASIDKTVRLWRVGN-DHCLRVFP-H----SNYVTCVHFNPVDDNYFISGS-------IDGKVRIW 422 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~-~~~~~~~~-h----~~~V~~v~fsp~~~~~l~sgs-------~Dg~V~iw 422 (686)
+|.-=.|-....|+..+ +..|.-|++.. ..+.+.|. | ...|..-..++ +.++++..+ ..|.+.+|
T Consensus 107 ~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLy 184 (1630)
T 1xi4_A 107 DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLY 184 (1630)
T ss_pred CceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeee
Confidence 45555665555444433 46799999963 34555554 3 45676677777 677666544 35889999
Q ss_pred ecCCCcEEEEeccCCcEEEEEEc--c-CCCEEEEEec---CCcEEEEeCCCC---eeee-eeeEEeeccccCCCCCeEEE
Q 005646 423 AVLSCHVVDWVDIRQIVTAVCYR--P-DGQGGIVGSM---MGDCRFYNVSDN---HLEL-DAEICVHSKKKAPCKRITGF 492 (686)
Q Consensus 423 d~~~~~~~~~~~~~~~V~~v~~s--p-dg~~l~~gs~---dg~i~iwd~~~~---~~~~-~~~~~~~~~~~~~~~~I~~l 492 (686)
....+......+|-.....+... + ..+.++.+.. .+.++|-++... ...+ .....+.-.......-..++
T Consensus 185 S~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~ 264 (1630)
T 1xi4_A 185 SVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 264 (1630)
T ss_pred ecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEE
Confidence 88776543333333222111111 1 1112222211 268888888543 1111 11111111111223334556
Q ss_pred EEeCCCCCeEEEEeCCCcEEEEeCCcceeEcC
Q 005646 493 QFLPQDSSKVMVSCADSQVRILQGPNVIGKYK 524 (686)
Q Consensus 493 ~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~ 524 (686)
+.++ .-..+...+.-|.|.++|..+..+.+.
T Consensus 265 ~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 265 QISE-KHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred Eecc-ccCEEEEEecCceEEEEecccchhhhh
Confidence 6666 456677777788888888877655443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=86.36 E-value=17 Score=43.91 Aligned_cols=76 Identities=8% Similarity=0.104 Sum_probs=53.2
Q ss_pred CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc-CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 394 ~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
.+...+++.++ ....++.-+.-|.|.+||+.++.++..... ...|...+.......++.-...|.|.--.+....+
T Consensus 258 ~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 258 NDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred cCcceEEEecc-ccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 45567788888 777888889999999999999988754443 34454445554444555556778777766665544
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=85.60 E-value=31 Score=34.51 Aligned_cols=111 Identities=11% Similarity=0.024 Sum_probs=66.6
Q ss_pred CeeEEEeeCC-CEEEEEECCCcEEEEECC--C---------CeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 356 EILDLSWSKN-NYLLSASIDKTVRLWRVG--N---------DHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 356 ~V~~l~~s~~-~~L~s~s~Dg~V~iWd~~--~---------~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
.+..+..... ..|+..+..|.+..+.+. . |.....+.....|.++...+ .+.+++..+..|.++.-.
T Consensus 147 ~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~ 225 (327)
T 3uc1_A 147 ELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVR-EGTYLLVATSGGYAKRTA 225 (327)
T ss_dssp CEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECC-TTCEEEEEETTSEEEEEE
T ss_pred EEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEE
Confidence 3333333333 377777788887777665 2 11222233567788877766 667899999999998887
Q ss_pred cCCCc-------EE---EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 424 VLSCH-------VV---DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 424 ~~~~~-------~~---~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
+..-. -+ .+......+-.+....+...++..+.+|.+.-++...
T Consensus 226 l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 226 IEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp GGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred HHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 64321 11 1112123444444444455677778888888887654
|
| >2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.56 E-value=0.51 Score=30.83 Aligned_cols=20 Identities=50% Similarity=0.619 Sum_probs=16.3
Q ss_pred CCCCCcccccccccccccCC
Q 005646 4 SSEDEECPFFDASEDIASIS 23 (686)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (686)
|+|+||-.||||.+-|....
T Consensus 13 SdEDed~EfFDA~efITv~~ 32 (47)
T 2rr3_B 13 SDEDDENEFFDAPEIITMPE 32 (47)
T ss_dssp CCCCCSSCCBCCCSSCSSCS
T ss_pred cccccccccccccceeEccC
Confidence 67888899999999777654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=85.45 E-value=30 Score=34.20 Aligned_cols=99 Identities=6% Similarity=-0.023 Sum_probs=56.4
Q ss_pred EeeCCC-EEE-EEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC--CcEEEEecCCCcEEEEeccC
Q 005646 361 SWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID--GKVRIWAVLSCHVVDWVDIR 436 (686)
Q Consensus 361 ~~s~~~-~L~-s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D--g~V~iwd~~~~~~~~~~~~~ 436 (686)
++++++ .|+ +......|.+-++..+.....+.. ... ..++| ++.+|+-.... ..|..-++.......+..
T Consensus 151 ~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~--~~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~-- 224 (302)
T 3s25_A 151 TCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC--NCY-KPVVL-DDTNVYYMDVNRDNAIVHVNINNPNPVVLTE-- 224 (302)
T ss_dssp CSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS--CEE-EEEEE-ETTEEEEEEGGGTTEEEEECSSSCCCEECSC--
T ss_pred EeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC--Ccc-ceeee-cCCEEEEEEcCCCcEEEEEECCCCCeEEEeC--
Confidence 345666 444 433467888888877665544432 222 34668 67777665544 356666666555433332
Q ss_pred CcEEEEEEccCCCEEEEEec--CCcEEEEeCCC
Q 005646 437 QIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSD 467 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~--dg~i~iwd~~~ 467 (686)
..+ ..|+|++++|..++. .+.|..-++..
T Consensus 225 ~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 225 ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 223 348888888876533 34555556554
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.33 E-value=0.92 Score=46.13 Aligned_cols=109 Identities=13% Similarity=0.081 Sum_probs=70.6
Q ss_pred CCEEEEEECCCcEEEEECCCCeeeeEeeCC--CCeEEEEEeec-CCCEEEEE--EcCCcEEEEecCCCcEEEEeccCCcE
Q 005646 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHS--NYVTCVHFNPV-DDNYFISG--SIDGKVRIWAVLSCHVVDWVDIRQIV 439 (686)
Q Consensus 365 ~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~--~~V~~v~fsp~-~~~~l~sg--s~Dg~V~iwd~~~~~~~~~~~~~~~V 439 (686)
+++++.++.||.|.-.|..+|+.+..+... .++....-... .+..++.+ +.||.|..++..++...........+
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 348899999999999999999999998743 23322111100 12234433 58999999999888544222221111
Q ss_pred E--EEEEc-----------cCCCEEEEEecCCcEEEEeCCCCeeeee
Q 005646 440 T--AVCYR-----------PDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 440 ~--~v~~s-----------pdg~~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
. -+... ..+..+++|+.+|++...|+.+++....
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~ 136 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA 136 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 0 01111 1455788999999999999999987654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=85.03 E-value=24 Score=39.51 Aligned_cols=107 Identities=18% Similarity=0.197 Sum_probs=63.1
Q ss_pred CC-EEEEEECCC--cEEEEECCCCeeeeEe-----e-CCCCeEEEEEeecCCCEEEEEEc--C-----CcEEEEecCCCc
Q 005646 365 NN-YLLSASIDK--TVRLWRVGNDHCLRVF-----P-HSNYVTCVHFNPVDDNYFISGSI--D-----GKVRIWAVLSCH 428 (686)
Q Consensus 365 ~~-~L~s~s~Dg--~V~iWd~~~~~~~~~~-----~-h~~~V~~v~fsp~~~~~l~sgs~--D-----g~V~iwd~~~~~ 428 (686)
++ +++.|+.++ .+.+||..+.+....- . ......++.+...++.+++.|+. + ..+.+||+.+..
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 44 666666544 7999999887654332 1 11222335555522667888876 2 458899998877
Q ss_pred ------EEEEec---cCCcEEEEEEccCCCEEEEEec--------CCcEEEEeCCCCeee
Q 005646 429 ------VVDWVD---IRQIVTAVCYRPDGQGGIVGSM--------MGDCRFYNVSDNHLE 471 (686)
Q Consensus 429 ------~~~~~~---~~~~V~~v~~spdg~~l~~gs~--------dg~i~iwd~~~~~~~ 471 (686)
-..... ....-.+++...++++++.|+. ...+.+||+.++...
T Consensus 580 w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 580 ATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp SSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred cccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 222211 1111122333344778888874 346999999988765
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.85 E-value=21 Score=35.86 Aligned_cols=55 Identities=16% Similarity=0.073 Sum_probs=28.4
Q ss_pred cEEEEecCCCcEEEEeccCCc-EEEEEEccCCCEEEEEecCC------cEEEEeCCCCeeee
Q 005646 418 KVRIWAVLSCHVVDWVDIRQI-VTAVCYRPDGQGGIVGSMMG------DCRFYNVSDNHLEL 472 (686)
Q Consensus 418 ~V~iwd~~~~~~~~~~~~~~~-V~~v~~spdg~~l~~gs~dg------~i~iwd~~~~~~~~ 472 (686)
.+.+||+.+.+-........+ ....+..-++++++.|+.++ .|.++++++++...
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 477899887653332222211 11122334778888888653 36667888776554
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=84.11 E-value=35 Score=33.72 Aligned_cols=101 Identities=13% Similarity=0.069 Sum_probs=56.6
Q ss_pred EeeCCC-EEEEEE----CCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-CCcEEEEecCCCcEEEEec
Q 005646 361 SWSKNN-YLLSAS----IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 361 ~~s~~~-~L~s~s----~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~~~~~~~~~~~ 434 (686)
.|++++ .|+-.. ....|..-++......+...+.. .+|+| +++.|+-.+. ..+|..-++..+....+..
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~-~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~ 184 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNT-SDRYFYYNNPKNGQLYRYDTASQSEALFYD 184 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEE-ETTEEEEECTTTCCEEEEETTTTEEEEEEC
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeE-ECCEEEEEeCCCceEEEEECCCCCEEEEeC
Confidence 556666 555444 33445555565433333333432 45677 6666665444 5778888887766544433
Q ss_pred cCCcEEEEEEccCCCEEEEEecCC--cEEEEeCCCCe
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMMG--DCRFYNVSDNH 469 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~dg--~i~iwd~~~~~ 469 (686)
.... ..+.|++.+|+-....+ .|..-++....
T Consensus 185 --~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 185 --CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp --SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred --CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 2222 34669999888766543 45555555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 686 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-22 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-20 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-13 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-14 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-11 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-11 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-13 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-13 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.003 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-13 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.001 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-12 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.002 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 8e-11 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 7e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.004 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 9e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-06 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 9e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.002 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 6e-04 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 7e-04 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 95.6 bits (236), Expect = 5e-22
Identities = 43/329 (13%), Positives = 93/329 (28%), Gaps = 67/329 (20%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H I M + D + L SA DG + +W ++ + + + +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESA--------------------------CVVFPP 337
+ I LK+ +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 338 KVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNY 396
++ + +S + D + +LW V C + F H +
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI---VTAVCYRPDGQGGIV 453
+ + F P + N F +GS D R++ + + + I +T+V + G+ +
Sbjct: 229 INAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 454 GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513
G +C ++ + + H R++
Sbjct: 288 GYDDFNCNVWDALKA--DRAGVLAGHD------NRVSCLGVTD----------------- 322
Query: 514 LQGPNVIGKYKDGKHIVSAGEDSNVYMWN 542
DG + + DS + +WN
Sbjct: 323 -----------DGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.5 bits (132), Expect = 9e-09
Identities = 38/259 (14%), Positives = 77/259 (29%), Gaps = 18/259 (6%)
Query: 307 ELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN- 365
+LK D K +L + + + V RI + GH +I + W +
Sbjct: 13 QLKNQIRDARKACADATLSQITNNI-----DPVGRIQMRTRRTLRGHLAKIYAMHWGTDS 67
Query: 366 NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424
L+SAS D + +W + + P S++V + P NY G +D I+ +
Sbjct: 68 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNL 126
Query: 425 LSCHVVDW----VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480
+ + + C D + S C +++
Sbjct: 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD 186
Query: 481 KKKAPCKRITGFQFLPQDSSKVMVSCADS--QVRILQGP----NVIGKYKDGKHIVSAGE 534
T + + + G N I + +G + +
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 535 DSNVYMWNCIGHEEPAHDQ 553
D+ +++ +E
Sbjct: 247 DATCRLFDLRADQELMTYS 265
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.1 bits (118), Expect = 5e-07
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277
V+ K + + HD + + + DG +A+ D +++W
Sbjct: 288 GYDDFNCNVWDALKADRA-------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 90.2 bits (222), Expect = 2e-20
Identities = 44/326 (13%), Positives = 89/326 (27%), Gaps = 48/326 (14%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ H + + F P + SA +D +++W + + I F +
Sbjct: 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
F+ E
Sbjct: 71 GKLLASCSADMT-------------------IKLWDFQGFECIRTMHGHDHNVSSVSIMP 111
Query: 364 KNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
++++SAS DKT+++W V +C++ F + D S S D VR+W
Sbjct: 112 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171
Query: 424 VLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE----LDAEICV 478
V + + + R +V + + P+ + G + D I +
Sbjct: 172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231
Query: 479 HSKKKAPCKR--------ITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYK---- 524
C + G F ++ D +R+ + +
Sbjct: 232 WDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH 290
Query: 525 ---------DGKHIVSAGEDSNVYMW 541
++V+ D V +W
Sbjct: 291 FVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 68.6 bits (166), Expect = 4e-13
Identities = 46/348 (13%), Positives = 96/348 (27%), Gaps = 58/348 (16%)
Query: 345 KPLHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402
+ GH + + + + ++SAS D T+++W R H++ V + F
Sbjct: 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67
Query: 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRF 462
+ + + V++V P+G + S +
Sbjct: 68 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127
Query: 463 YNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK 522
+ V + V + + PN
Sbjct: 128 WEVQTGY-------------------------------CVKTFTGHREWVRMVRPN---- 152
Query: 523 YKDGKHIVSAGEDSNVYMWNCIGHEE----PAHDQAKTIRSLERFTTNASIAIPWCGLKC 578
+DG I S D V +W E H S ++ +SI+
Sbjct: 153 -QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 211
Query: 579 GNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSAS 638
+ + P L D + L +++ +G K + S +
Sbjct: 212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF-----ILSCA 266
Query: 639 ALHKSQ-YKFLKSSCLCTTSSH-------AW---GLVIVTAGWDGRIR 675
+ + + C+ T ++H + +VT D ++
Sbjct: 267 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 314
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.7 bits (117), Expect = 5e-07
Identities = 10/60 (16%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278
C+ + ++V+ K + + + AH+ + ++ F Y+ + D V++W+
Sbjct: 265 CADDKTLRVWDYKNKRCM-------KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.6 bits (197), Expect = 9e-17
Identities = 53/326 (16%), Positives = 108/326 (33%), Gaps = 34/326 (10%)
Query: 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSEL 308
H + +KFS DG+YLA+ G + ++++V + + + S
Sbjct: 61 HTSVVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 119
Query: 309 KPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYL 368
L++ S + + + + + + + L
Sbjct: 120 SDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178
Query: 369 LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428
+S S D+TVR+W + C + VT V +P D Y +GS+D VR+W +
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238
Query: 429 VVDWVDI--------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480
+V+ +D + V +V + DGQ + GS+ + +N+ + + + D++
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298
Query: 481 KKKAPCKRITGFQF---LPQDSSKVMVSCADSQVRI---------------------LQG 516
+ F Q+ ++ D V +
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358
Query: 517 PNVIGKYKDGKHIVSAGEDSNVYMWN 542
N + + D +W
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.0 bits (185), Expect = 2e-15
Identities = 40/211 (18%), Positives = 68/211 (32%), Gaps = 57/211 (27%)
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278
S + V+V+ + + + H S+ ++ F+ DGQ + S D V+LW
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282
Query: 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPK 338
+ ++ P
Sbjct: 283 LQNANNKSDSKTPNSG-------------------------------------------- 298
Query: 339 VFRILEKPLHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNY 396
+ GH +L ++ ++N Y+LS S D+ V W + + L + H N
Sbjct: 299 ------TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 352
Query: 397 VTCVHFNPV-----DDNYFISGSIDGKVRIW 422
V V + N F +GS D K RIW
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.4 bits (181), Expect = 8e-15
Identities = 48/293 (16%), Positives = 98/293 (33%), Gaps = 50/293 (17%)
Query: 302 VNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361
NH + P +D + S+ +L++ + +++ P + R ++ LH+ H+ + +
Sbjct: 10 ANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVK 69
Query: 362 WSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-------------------HSNYVTCVHF 402
+S + L+ +KT +++RV + + Y+ V F
Sbjct: 70 FSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF 129
Query: 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRF 462
+P D + +G+ D +RIW + + +V + + +V
Sbjct: 130 SP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 188
Query: 463 YNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--------- 513
D S + +T P D + D VR+
Sbjct: 189 IW--------DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240
Query: 514 --LQGPNVIGKY-----------KDGKHIVSAGEDSNVYMWNCIGHEEPAHDQ 553
L N G +DG+ +VS D +V +WN + +
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.4 bits (168), Expect = 3e-13
Identities = 48/298 (16%), Positives = 97/298 (32%), Gaps = 53/298 (17%)
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278
S V + + + D I ++ FSPDG++LA+ +D ++R+W
Sbjct: 90 VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149
Query: 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS-------LRRTSESA 331
+ + + + E D + + + + +I L++ +
Sbjct: 150 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT 209
Query: 332 CVVFPP----------------------KVFRILEKPLHEFHGHSGEILDLSWSKN-NYL 368
V P + L+ GH + + ++++ +
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269
Query: 369 LSASIDKTVRLWRVGNDHCLRVFP-------------HSNYVTCVHFNPVDDNYFISGSI 415
+S S+D++V+LW + N + H ++V V +D Y +SGS
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSK 328
Query: 416 DGKVRIW--------AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465
D V W +L H + V + P+ GS R +
Sbjct: 329 DRGVLFWDKKSGNPLLMLQGH-RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.5 bits (176), Expect = 3e-14
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 348 HEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVD 406
++ H H +L L ++ + +S D + WR + S+ V + D
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV-D 317
Query: 407 DNYFISGSIDGKVRIWAVL 425
D Y ++GS D K ++ V+
Sbjct: 318 DKYIVTGSGDKKATVYEVI 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (149), Expect = 6e-11
Identities = 39/308 (12%), Positives = 88/308 (28%), Gaps = 37/308 (12%)
Query: 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSEL 308
H + + S +++ + G G V++W + + V +N + +
Sbjct: 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV--------SQLDCLNRDNYI 100
Query: 309 KPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYL 368
+ + + +L E++ + +
Sbjct: 101 RSCKLLPDG----CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC 156
Query: 369 LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428
S D + +W + N +R F D +G +D VR W +
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216
Query: 429 VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488
+ D + ++ Y P G+ VG + +V+ +
Sbjct: 217 QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---------KYQLHLHESC 267
Query: 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPN--VIGKYK------------DGKHIVSAGE 534
+ +F + + D+ + + P I + K D K+IV+
Sbjct: 268 VLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG 326
Query: 535 DSNVYMWN 542
D ++
Sbjct: 327 DKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.7 bits (148), Expect = 7e-11
Identities = 34/245 (13%), Positives = 71/245 (28%), Gaps = 25/245 (10%)
Query: 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNH 304
+ D I + K PDG L G+ + +W + + ++ P+C ++
Sbjct: 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151
Query: 305 LSELKPLFMDKEKISILKSLRRTSESACVVFP-----------------------PKVFR 341
S++ I++ +T + +
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Query: 342 ILEKPLHEFHGHSGEILDLSWSK-NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCV 400
+ E + H + +I L + +L V + V ++ H + V +
Sbjct: 212 LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL 271
Query: 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDC 460
F +F+S D + W + V + D + + GS
Sbjct: 272 KFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKA 330
Query: 461 RFYNV 465
Y V
Sbjct: 331 TVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (129), Expect = 2e-08
Identities = 27/179 (15%), Positives = 43/179 (24%), Gaps = 11/179 (6%)
Query: 333 VVFPPKVFRILEKPLHEFH----GHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHC- 387
V FPP P H H + ++ S + V++W + +
Sbjct: 26 VPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNK 85
Query: 388 -----LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAV 442
L NY+ P D I G + IW + + ++ A
Sbjct: 86 SPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144
Query: 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501
V V D H + A C I+
Sbjct: 145 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (128), Expect = 2e-08
Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 8/109 (7%)
Query: 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426
+ D + + + H V V + + +G G V++W +
Sbjct: 24 QPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISH 81
Query: 427 CH------VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469
+D ++ + + PDG IVG ++++
Sbjct: 82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 1e-06
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280
S+L+ S D +Y+ + D +++V+
Sbjct: 304 KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.8 bits (169), Expect = 2e-13
Identities = 32/202 (15%), Positives = 57/202 (28%), Gaps = 7/202 (3%)
Query: 345 KPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFN 403
K GH ++ N ++S S D T+++W CLR H+ V
Sbjct: 7 KSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 66
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463
+ T C + + GS R +
Sbjct: 67 DNIIISG----STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122
Query: 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY 523
++ V + + KV ++ + LQG
Sbjct: 123 DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 182
Query: 524 K--DGKHIVSAGEDSNVYMWNC 543
DG H+VS D+++ +W+
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDV 204
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.8 bits (169), Expect = 2e-13
Identities = 41/332 (12%), Positives = 95/332 (28%), Gaps = 37/332 (11%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD-------------- 289
+ ++ HD ++T G + S DD +++W V + L +
Sbjct: 10 KVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68
Query: 290 ---IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346
D + + + L+ + + + S +V+ I
Sbjct: 69 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ 128
Query: 347 LHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVD 406
+ ++S + D V++W + CL V+ D
Sbjct: 129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN--RVYSLQFD 186
Query: 407 DNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466
+ +SGS+D +R+W V + + + + Q +T + G+ + +++
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT-SGMELKDNILVSGNADSTVKIWDIK 245
Query: 467 -DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS--QVRILQGPNVIGKY 523
L+ H + F D V + + +R L G
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 305
Query: 524 K---------DGKHIVSAGED----SNVYMWN 542
+ + + + +
Sbjct: 306 GVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.003
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG---- 272
+ S VK++ ++ E E G + ++ S A +G
Sbjct: 274 ITSSDDGTVKLWDL--KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331
Query: 273 VVRLW 277
+ +
Sbjct: 332 KLLVL 336
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.2 bits (162), Expect = 8e-13
Identities = 39/322 (12%), Positives = 88/322 (27%), Gaps = 57/322 (17%)
Query: 244 QEIQAHDGSILT-MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTV 302
Q I + D Q + S D +++W E + C+ +
Sbjct: 6 QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65
Query: 303 NHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG---------- 352
+ + + T C F
Sbjct: 66 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125
Query: 353 ----------HSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHF 402
+++ + Y++SAS D+T+++W +R +
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR--GIAC 183
Query: 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRF 462
D +SGS D +R+W + + ++ + + + + + G+ G +
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRI-VSGAYDGKIKV 242
Query: 463 YNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI 520
+++ + +C+ + R+ QF
Sbjct: 243 WDLVAALDPRAPAGTLCLRTLV-EHSGRVFRLQF-------------------------- 275
Query: 521 GKYKDGKHIVSAGEDSNVYMWN 542
D IVS+ D + +W+
Sbjct: 276 ----DEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.001
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 224 RVKVYHCK--KRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277
++KV+ + + + + H G + ++F D + S+ D + +W
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW 292
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.8 bits (161), Expect = 2e-12
Identities = 40/328 (12%), Positives = 96/328 (29%), Gaps = 53/328 (16%)
Query: 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLS 306
+AHD I ++ + S DG +++W + D ++H+
Sbjct: 11 KAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDK-SYSHFVHKSGLHHVD 67
Query: 307 ELKPLFMDKEKISILKSLRRTSESACVVF-------PPKVFRILEKPLHEFHGHSGEILD 359
L+ + D ++ ++ + TS S ++F K + L +
Sbjct: 68 VLQAIERDAFELCLVAT---TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124
Query: 360 LSWS------KNNYLLSASIDKTVRLWRV-------------------GNDHCLRVFPHS 394
L W ++ L++ + T +W+ S
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
Query: 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG 454
+ T V + +G +G V+I + + + + + + +
Sbjct: 185 QFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNS-------NSIR 235
Query: 455 SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514
S+ + ++ H + + + + + + S V
Sbjct: 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV--- 292
Query: 515 QGPNVIGKYKDGKHIVSAGEDSNVYMWN 542
+ G+ + SAG D + W+
Sbjct: 293 ---MSLSFNDSGETLCSAGWDGKLRFWD 317
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.6 bits (150), Expect = 5e-11
Identities = 28/256 (10%), Positives = 67/256 (26%), Gaps = 49/256 (19%)
Query: 352 GHSGEILDLSWSKNNYLLSASIDKTVRLWRV-------GNDHCLRVFPHS------NYVT 398
H +I +S N++ +S S D +++W D F H + +
Sbjct: 12 AHDADIFSVSAC-NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70
Query: 399 CVHFNPVDDNYFISGSIDGKVRIWAVLS-----------CHVVDWVDIRQIVTAVCYRPD 447
+ + + + S G + + + ++D + A+ +
Sbjct: 71 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130
Query: 448 GQGG-----IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502
+ + G + E + +P + G P S+
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFA----DESNSLTLNWSPTLELQGTVESPMTPSQF 186
Query: 503 MVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLER 562
S S+ G I + + V + + +++
Sbjct: 187 ATSVDISE--------------RGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNS 231
Query: 563 FTTNASIAIPWCGLKC 578
+ + P L
Sbjct: 232 NSIRSVKFSPQGSLLA 247
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.0 bits (133), Expect = 7e-09
Identities = 39/367 (10%), Positives = 93/367 (25%), Gaps = 51/367 (13%)
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSIL-------TMKFSPDGQYLASAGDD 271
CS +KV+ K E + K H + + + + +A+
Sbjct: 30 CSGDGYLKVWDNKLLDNE-NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 88
Query: 272 GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKE-------------KI 318
G + +++ ++ +V ++D + LK +
Sbjct: 89 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTT 148
Query: 319 SILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVR 378
I K ES + L+ + S + S+ + + + TV+
Sbjct: 149 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQ 208
Query: 379 LWRVGNDHCLRVFPHSNYVTC------VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432
+ + L F + + + + +
Sbjct: 209 ISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER 268
Query: 433 VDIRQI-----------------VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE 475
+ + V ++ + G+ G RF++V E
Sbjct: 269 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK--ERITT 326
Query: 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKD-GKHIVSAGE 534
+ +H S + V+ L+ G D + +
Sbjct: 327 LNMHCDDIEIE--EDILAVDEHGDS--LAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL 382
Query: 535 DSNVYMW 541
D ++ +
Sbjct: 383 DRSIRWF 389
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.0 bits (159), Expect = 4e-12
Identities = 45/357 (12%), Positives = 91/357 (25%), Gaps = 34/357 (9%)
Query: 348 HEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFN 403
H F I +W+K+ + + V ++ + ++V H+ VT V +
Sbjct: 3 HSFLVEP--ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463
P D N ++ D +W + + I +I A ++ R
Sbjct: 61 P-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 119
Query: 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY 523
++ + + KK + + P SC D + RI +
Sbjct: 120 SICYFE-QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC-DFKCRIFSAYIKEVEE 177
Query: 524 KDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEK 583
+ + M+ H + + + A
Sbjct: 178 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA 237
Query: 584 EPQLHVSDD----DSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASA 639
E+ A + ++S + +P S +A
Sbjct: 238 TLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 297
Query: 640 LHKSQYKFLKSSCLCTTS---------------------SHAWGLVIVTAGWDGRIR 675
+ Q K+S + + A T G DG +
Sbjct: 298 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 354
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.3 bits (152), Expect = 3e-11
Identities = 37/372 (9%), Positives = 81/372 (21%), Gaps = 85/372 (22%)
Query: 218 FCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277
C V +Y K H+G + + ++PD + + G D +W
Sbjct: 24 ICPNNHEVHIYEKSGNKWVQVHELKE-----HNGQVTGVDWAPDSNRIVTCGTDRNAYVW 78
Query: 278 QV----------------------------------------------VEDERLTEVDIP 291
+ D + +
Sbjct: 79 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK 138
Query: 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351
I + + + S L K I + + E P + + E
Sbjct: 139 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 198
Query: 352 GHSGEILDLSWS-KNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF 410
G + + +S + + S D TV L + + +
Sbjct: 199 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLV 258
Query: 411 ISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470
+G D ++ + ++ + + RF N+
Sbjct: 259 AAGH-DCFPVLF--------TYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS 309
Query: 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIV 530
+ ++ L +K
Sbjct: 310 SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC------------------------SQFC 345
Query: 531 SAGEDSNVYMWN 542
+ G D + +W+
Sbjct: 346 TTGMDGGMSIWD 357
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.2 bits (92), Expect = 6e-04
Identities = 15/83 (18%), Positives = 22/83 (26%), Gaps = 4/83 (4%)
Query: 349 EFHGHSGEILDLSWSKNNYLLSA-SIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDD 407
F G S ++DK H N V+ +
Sbjct: 279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK 338
Query: 408 N---YFISGSIDGKVRIWAVLSC 427
F + +DG + IW V S
Sbjct: 339 AKCSQFCTTGMDGGMSIWDVRSL 361
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.3 bits (87), Expect = 0.002
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 247 QAHDGSILTMKFSPDGQY----LASAGDDGVVRLWQV 279
H S+ + G+ + G DG + +W V
Sbjct: 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.8 bits (148), Expect = 8e-11
Identities = 13/93 (13%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 345 KPLHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRV----GNDHCLRVFPHSNYVTC 399
+ + I D+ + + LL S D ++ +++ N L+ + + + C
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432
+F D G++ G++ ++
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQA 94
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.2 bits (144), Expect = 2e-10
Identities = 33/331 (9%), Positives = 81/331 (24%), Gaps = 35/331 (10%)
Query: 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLS 306
QA I +K P L DG + +++ + ++ + +
Sbjct: 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 307 ELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366
+++ + ILK S S + + + + +
Sbjct: 68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127
Query: 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW---- 422
+ N+ + + + I G + +V+ +
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTK--------VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179
Query: 423 -AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE------ 475
+ + + QI + +G S+ G D + ++
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239
Query: 476 -ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYK-------- 524
++ K + +F P + + +D + LQ I +
Sbjct: 240 CHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV 298
Query: 525 ----DGKHIVSAGEDSNVYMWNCIGHEEPAH 551
+ A D I +
Sbjct: 299 KIACSDNILCLATSDDTFKTNAAIDQTIELN 329
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.2 bits (123), Expect = 1e-07
Identities = 19/211 (9%), Positives = 48/211 (22%), Gaps = 3/211 (1%)
Query: 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276
+ + + + + K + L ++ V+
Sbjct: 115 LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQW 174
Query: 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFP 336
+++ E I E + +
Sbjct: 175 FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234
Query: 337 PKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSA-SIDKTVRLWRVGNDHCLRVFPHSN 395
FR + + + + + +S + L D + W + ++ F N
Sbjct: 235 RFAFRC-HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293
Query: 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426
+ V DN + D + A +
Sbjct: 294 EDSVVKIAC-SDNILCLATSDDTFKTNAAID 323
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.0 bits (94), Expect = 3e-04
Identities = 30/315 (9%), Positives = 76/315 (24%), Gaps = 45/315 (14%)
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278
S + VY ++K + L + +L F + G L
Sbjct: 29 TSWDGSLTVYKFDIQAKNVDLLQS----LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84
Query: 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPK 338
+ + I + + I +
Sbjct: 85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV-----------IDPRNYG 133
Query: 339 VFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRV----FPHS 394
I K L+ + + + ++ L+ + V+ +R+
Sbjct: 134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK 193
Query: 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS----------------CHVVDWVDIRQI 438
+ V P + + SIDG+V + + ++
Sbjct: 194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253
Query: 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498
V ++ + P + G +N+ + + K +
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRK-------KIKNFAKFNEDSVVKIAC---S 303
Query: 499 SSKVMVSCADSQVRI 513
+ + ++ +D +
Sbjct: 304 DNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 7e-04
Identities = 15/130 (11%), Positives = 34/130 (26%), Gaps = 17/130 (13%)
Query: 361 SWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP----------------HSNYVTCVHFNP 404
+ +SID V + + + V + F+P
Sbjct: 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261
Query: 405 VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN 464
+ + DG + W + + + + V + + +
Sbjct: 262 -RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNA 320
Query: 465 VSDNHLELDA 474
D +EL+A
Sbjct: 321 AIDQTIELNA 330
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 59.2 bits (141), Expect = 4e-10
Identities = 32/255 (12%), Positives = 64/255 (25%), Gaps = 3/255 (1%)
Query: 347 LHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFN 403
+GH+ I LS S + L SA + + W + RVFP H+ +T +
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463
D + +S KV V + + G I +
Sbjct: 65 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124
Query: 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY 523
E+ + K+ +S A
Sbjct: 125 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 184
Query: 524 KDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEK 583
+ + ++ + A T A ++ ++
Sbjct: 185 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 244
Query: 584 EPQLHVSDDDSPENL 598
+ + V + + P +
Sbjct: 245 DNSVIVWNMNKPSDH 259
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.5 bits (134), Expect = 3e-09
Identities = 37/309 (11%), Positives = 67/309 (21%), Gaps = 28/309 (9%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDP-----SCI 298
Q H+ +I + S DG+ L SA +G + W + +
Sbjct: 6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 65
Query: 299 YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358
+ +S L + S + S + + I
Sbjct: 66 KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125
Query: 359 DLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGK 418
+ S + + + Y I
Sbjct: 126 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV 185
Query: 419 VRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE-----LD 473
D + + S +++ LD
Sbjct: 186 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD 245
Query: 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAG 533
+ V + K I S ++ + IVSAG
Sbjct: 246 NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL------------------NETTIVSAG 287
Query: 534 EDSNVYMWN 542
+DSN+ WN
Sbjct: 288 QDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.6 bits (103), Expect = 2e-05
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 362 WSKNNYLLSASIDKTVRLWRVGNDHCLRVF---PHSNYVTCVHFNPVDDNYFISGSIDGK 418
N L + S+D +V +W + + H+ ++ +S D
Sbjct: 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSN 291
Query: 419 VRIWAV 424
++ W V
Sbjct: 292 IKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.4 bits (100), Expect = 5e-05
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278
S V V++ K S + H S + + + SAG D ++ W
Sbjct: 242 GSLDNSVIVWNMNKPSDHPIIIKGA-----HAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
Query: 279 V 279
V
Sbjct: 297 V 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.7 bits (85), Expect = 0.004
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 347 LHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRV 382
+ + + + W ++SA D ++ W V
Sbjct: 262 IIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (142), Expect = 4e-10
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 348 HEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNP 404
+ G I LSW + + D T+R+W V C++ + V
Sbjct: 246 DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 305
Query: 405 VDDNYFISGSIDGKVRIW 422
+ IS S+DG + +
Sbjct: 306 TGNGRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 1e-07
Identities = 35/314 (11%), Positives = 67/314 (21%), Gaps = 29/314 (9%)
Query: 251 GSILTMKFSPDGQYLASA-GDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELK 309
+ + P +A G VR + + V S + + +K
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVV-------TTVK 70
Query: 310 PLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL 369
+ + F + + EF +G I D+SW L
Sbjct: 71 FSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL 130
Query: 370 ---SASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426
D + + L + D ++
Sbjct: 131 CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 190
Query: 427 CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC 486
D R G + E + +
Sbjct: 191 PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP 250
Query: 487 KRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYK----------------DGKH 528
+ F DS K AD+ +R+ + + K+
Sbjct: 251 VQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 310
Query: 529 IVSAGEDSNVYMWN 542
I+S D + +
Sbjct: 311 IISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.4 bits (100), Expect = 5e-05
Identities = 31/271 (11%), Positives = 75/271 (27%), Gaps = 16/271 (5%)
Query: 249 HDGSILTMKFSP--DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLS 306
+ T+KFSP QYL S + G V +W D+ V++ +
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 307 ELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366
+ + S + ++ H + ++
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426
S+ + ++V V F+P + I+ D K+ + S
Sbjct: 182 G----SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS 237
Query: 427 CHVVDWVDIRQIVTAVC----YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482
+ +++ Q D Q R ++V+ + + + + ++
Sbjct: 238 GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS--KCVQKWTLDKQQ 295
Query: 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513
+ + +++ D +
Sbjct: 296 LG----NQQVGVVATGNGRIISLSLDGTLNF 322
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 3e-04
Identities = 27/229 (11%), Positives = 50/229 (21%), Gaps = 13/229 (5%)
Query: 241 YKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYF 300
E Q G I + + +G+ L D + +
Sbjct: 106 NVKSEFQVLAGPISDISWDFEGRRLCV---------VGEGRDNFGVFISWDSGNSLGEVS 156
Query: 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360
+ L + S+ + E
Sbjct: 157 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD 216
Query: 361 SWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVR 420
S + S + + +D F + D +R
Sbjct: 217 SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIR 276
Query: 421 IWAVLSCHVVDWVDIRQ---IVTAVCYRPDGQGGIV-GSMMGDCRFYNV 465
+W V + V + + V G G I+ S+ G FY +
Sbjct: 277 VWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 58.7 bits (140), Expect = 9e-10
Identities = 23/314 (7%), Positives = 71/314 (22%), Gaps = 30/314 (9%)
Query: 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSE 307
I ++ D + G L + D R + + E + ++ +
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLG--IYDYRTGKAEKFEENLGNVFAMGVDRNG 97
Query: 308 LKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNY 367
+ + + L + + + + +
Sbjct: 98 KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAY------GFPLKHG 151
Query: 368 LLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW--AVL 425
+ + + ++ + +++ F+ D S VL
Sbjct: 152 ETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVL 210
Query: 426 SCHVVDWVDIRQI------VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479
+ I P G + + S +++ +
Sbjct: 211 NFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMII 270
Query: 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYK---------DGKH 528
+ I + ++ + + ++ V D K
Sbjct: 271 PLES--SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKT 328
Query: 529 IVSAGEDSNVYMWN 542
++ +D +Y +
Sbjct: 329 VMVRKDDGKIYTFP 342
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 55.3 bits (131), Expect = 1e-08
Identities = 20/194 (10%), Positives = 45/194 (23%), Gaps = 13/194 (6%)
Query: 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSEL 308
+ F D + L + ++ S +
Sbjct: 177 ENSHDYAPAFDADSKNLYYLSYRSLDPSPDR------VVLNFSFEVVSKPFVIPLIPGSP 230
Query: 309 KPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-Y 367
P + ++ ++ P V + + + Y
Sbjct: 231 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY 290
Query: 368 LLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS- 426
A + + V +V N +T + + D + DGK+ + +
Sbjct: 291 YQGAPEKGVLLKYDVKT---RKVTEVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLEKP 346
Query: 427 -CHVVDWVDIRQIV 439
D R +V
Sbjct: 347 EDERTVETDKRPLV 360
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 49.9 bits (117), Expect = 6e-07
Identities = 8/49 (16%), Positives = 22/49 (44%)
Query: 242 KGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290
K +++ ++ ++ S D + + DDG + + + + E V+
Sbjct: 306 KTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVET 354
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.2 bits (136), Expect = 2e-09
Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 6/123 (4%)
Query: 350 FHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDN 408
GH ++ ++NY+++ + DK +R++ N L H V + +
Sbjct: 8 LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GG 65
Query: 409 YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGG---IVGSMMGDCRFYNV 465
+SGS D VR+W + + + + + GS + +
Sbjct: 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125
Query: 466 SDN 468
Sbjct: 126 PKE 128
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.1 bits (128), Expect = 2e-08
Identities = 30/321 (9%), Positives = 90/321 (28%), Gaps = 43/321 (13%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
++ H S++T + Y+ + DD ++R++ + + L ++ + + + +
Sbjct: 8 LRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 66
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365
L S V + + + +
Sbjct: 67 ------------------LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 108
Query: 366 NYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425
Y+++ S D T+ +W++ + + + V P ++ YF+ + V
Sbjct: 109 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168
Query: 426 SCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485
+ V + + S D + + D+ + + + +
Sbjct: 169 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 228
Query: 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK--------------------- 524
+ Q + ++ S ++
Sbjct: 229 DLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT 288
Query: 525 ---DGKHIVSAGEDSNVYMWN 542
+I+ +G ++ ++N
Sbjct: 289 TFYVSDNILVSGSENQFNIYN 309
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.7 bits (127), Expect = 3e-08
Identities = 6/77 (7%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 348 HEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPV 405
+ H+ ++ ++ +L + + ++ + + + ++ + V+F
Sbjct: 276 KFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG- 334
Query: 406 DDNYFISGSIDGKVRIW 422
+ DG+ +
Sbjct: 335 -KTLVAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.0 bits (94), Expect = 3e-04
Identities = 38/317 (11%), Positives = 87/317 (27%), Gaps = 32/317 (10%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
++ HDG + +K++ G ++ + D V
Sbjct: 47 LQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 106
Query: 304 HLSELKPLFMDKE----KISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359
++ + D K+ S+ E + GH +
Sbjct: 107 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV-R 165
Query: 360 LSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKV 419
N ++S S D T+ +W V CL + + IS S+D +
Sbjct: 166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 225
Query: 420 RIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479
RIW + + ++ + + + + +D +
Sbjct: 226 RIWDLENGELMYTLQGHTALVGLLR-----------LSDKFLVSAAADGSIRGWDANDYS 274
Query: 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKDGKH--------- 528
K ++ S ++VS +++Q I L+ ++
Sbjct: 275 RKFSYHHTNLSAITTFY-VSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK 333
Query: 529 ----IVSAGEDSNVYMW 541
+ + +D ++
Sbjct: 334 GKTLVAAVEKDGQSFLE 350
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.6 bits (129), Expect = 1e-08
Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 15/121 (12%)
Query: 344 EKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403
++ L GH+ I L+ + L+S S D + W + H HSN + + +
Sbjct: 3 DEVLKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSMHQ----DHSNLIVSLDNS 55
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463
+ L + + + DG ++ +
Sbjct: 56 K--------AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQ 107
Query: 464 N 464
+
Sbjct: 108 S 108
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.8 bits (127), Expect = 2e-08
Identities = 9/80 (11%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 348 HEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPV 405
+ + + + + + + S+D + ++ V ++ H + V + +
Sbjct: 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET- 268
Query: 406 DDNYFISGSIDGKVRIWAVL 425
+ +S D ++ W V+
Sbjct: 269 -PSTLVSSGADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.2 bits (115), Expect = 7e-07
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 344 EKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRV 382
K + + H + +L W + L+S+ D ++ W V
Sbjct: 248 MKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.1 bits (107), Expect = 6e-06
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD 271
E+ S + +Y K+ K + AL AH + + + L S+G D
Sbjct: 226 EEDLVATGSLDTNIFIYSVKRPMKIIKAL------NAHKDGVNNLLWETPS-TLVSSGAD 278
Query: 272 GVVRLWQVV 280
++ W VV
Sbjct: 279 ACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.2 bits (102), Expect = 3e-05
Identities = 41/318 (12%), Positives = 86/318 (27%), Gaps = 54/318 (16%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ I H+ I + +P L S DG + W + I +D S
Sbjct: 7 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS------- 55
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
A L+ H + S +
Sbjct: 56 --------------------------KAQEYSSISWDDTLKVNGITKHEFGSQPKVASAN 89
Query: 364 KNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+ + + D + + + ++ ++ + V + + +V +
Sbjct: 90 NDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLS 149
Query: 424 VLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483
L +R + + P G +MG Y++ ++ SK
Sbjct: 150 DLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKIN 209
Query: 484 APCKRITGFQ--FLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKDG------------- 526
A + + V D+ + I ++ P I K +
Sbjct: 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP 269
Query: 527 KHIVSAGEDSNVYMWNCI 544
+VS+G D+ + WN +
Sbjct: 270 STLVSSGADACIKRWNVV 287
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.8 bits (127), Expect = 3e-08
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 362 WSKNNYLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKV 419
+ SAS DKT+++W V + P + +S S +G +
Sbjct: 247 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFI 305
Query: 420 RIW 422
Sbjct: 306 NFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.4 bits (113), Expect = 1e-06
Identities = 42/258 (16%), Positives = 63/258 (24%), Gaps = 37/258 (14%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP------------ 291
+ H K SP G Y AS G VR+W + + + IP
Sbjct: 52 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD 111
Query: 292 ----------------EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVF 335
T N + M+ + R S S
Sbjct: 112 SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV 171
Query: 336 PPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSN 395
+ + S D T+ L+ + VF +
Sbjct: 172 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS 231
Query: 396 YVTCVHFNPV-------DDNYFISGSIDGKVRIWAVLSCHVVDWVDI--RQIVTAVCYRP 446
H V D S S D ++IW V + V + + R +
Sbjct: 232 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 291
Query: 447 DGQGGIVGSMMGDCRFYN 464
Q + S G F N
Sbjct: 292 TKQALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.0 bits (107), Expect = 7e-06
Identities = 38/322 (11%), Positives = 70/322 (21%), Gaps = 34/322 (10%)
Query: 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISG 413
G + L + + +V VG+ ++ HS+ T +P Y SG
Sbjct: 18 GTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASG 76
Query: 414 SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473
+ G VRIW + + E
Sbjct: 77 DVHGNVRIWDTTQTTHILKTT---------------------IPVFSGPVKDISWDSESK 115
Query: 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAG 533
V ++ + +S P I D +
Sbjct: 116 RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE 175
Query: 534 EDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDD 593
+ H + H +T I G + +
Sbjct: 176 GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 235
Query: 594 SPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCL 653
+ F G + S K W L + + + Q + +
Sbjct: 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT--- 292
Query: 654 CTTSSHAWGLVIVTAGWDGRIR 675
+V+ +G I
Sbjct: 293 --------KQALVSISANGFIN 306
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.2 bits (97), Expect = 1e-04
Identities = 32/308 (10%), Positives = 60/308 (19%), Gaps = 32/308 (10%)
Query: 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKP 310
G+ + + +P G + V V + H +
Sbjct: 18 GTAVVLGNTPAGDKIQYCNGTSVY-TVPVG-------------SLTDTEIYTEHSHQTTV 63
Query: 311 LFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLS 370
+ P+ S
Sbjct: 64 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123
Query: 371 ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430
V L+ G + + +
Sbjct: 124 RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS 183
Query: 431 DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490
+ + + V +V Y PDG G YN D S K
Sbjct: 184 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG--TKTGVFEDDSLKNVAHSGSV 241
Query: 491 GFQFLPQDSSKVMVSCADSQVRI-----------LQGPN-----VIGKYKDGKHIVSAGE 534
D +K+ + AD ++I + +G + +VS
Sbjct: 242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 301
Query: 535 DSNVYMWN 542
+ + N
Sbjct: 302 NGFINFVN 309
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 51.1 bits (121), Expect = 3e-07
Identities = 18/196 (9%), Positives = 53/196 (27%), Gaps = 20/196 (10%)
Query: 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
N + ++ + L + ++V V + Y + D ++ +
Sbjct: 30 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMI 88
Query: 423 AVLSCHVVDWVDI------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476
+ + +I R + ++ + + I G+ +
Sbjct: 89 DLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL------- 141
Query: 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDS 536
+ + P+ +++ + I + + GK ++ +D
Sbjct: 142 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI------VNVKETGKVLLVNYKDI 195
Query: 537 NVYMWNCIGHEEPAHD 552
+ IG D
Sbjct: 196 DNLTVTSIGAAPFLAD 211
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.5 bits (96), Expect = 3e-04
Identities = 18/179 (10%), Positives = 45/179 (25%), Gaps = 14/179 (7%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE-IDPSCIYFTVNHLSELKPLFMD 314
+ S G+YL G D + + + E +I I+ + + E +
Sbjct: 67 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIA- 125
Query: 315 KEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASID 374
+ + K + G + + + AS +
Sbjct: 126 ------------GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 173
Query: 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV 433
+ V + + + + + + G D R + + +
Sbjct: 174 HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVA 232
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 49.7 bits (117), Expect = 5e-07
Identities = 20/260 (7%), Positives = 53/260 (20%), Gaps = 18/260 (6%)
Query: 224 RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW------ 277
+ K S+ + SPDG+ + + +
Sbjct: 63 DIYGIDLDTC-KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 278 ---QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI--------LKSLRR 326
+V E P + ++ L++ I +L
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181
Query: 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH 386
+ + P V + +A + +
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241
Query: 387 CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP 446
+ + ++ + + ++ ++ V +
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDK 301
Query: 447 DGQGGIVGSMMGDCRFYNVS 466
G +G D +N
Sbjct: 302 KGDKLYLGGTFNDLAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 45.9 bits (107), Expect = 1e-05
Identities = 25/306 (8%), Positives = 68/306 (22%), Gaps = 36/306 (11%)
Query: 249 HDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDIPEI------DPSCIYFT 301
T +PD + G + + + ++ + +
Sbjct: 38 DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS 97
Query: 302 VNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361
+ K ++ L VF KP+ F + +
Sbjct: 98 PDG----KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-KPVRTFPMPRQ-VYLMR 151
Query: 362 WSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRI 421
+ + L A D V P N+ + P ++ S + +
Sbjct: 152 AADDGSLYVAGPDIYK--MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 209
Query: 422 WAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481
++ D D ++ ++ +
Sbjct: 210 LYTIARFKDDKQDP----------------ATADLLYGYLSVDLKTGKTHTQEFADLTEL 253
Query: 482 KKAPCKRITGFQFLPQDSSKVMVSCADS-----QVRILQGPNVIGKYKDGKHIVSAGEDS 536
+ + +++ + + K G + G +
Sbjct: 254 YFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN 313
Query: 537 NVYMWN 542
++ ++N
Sbjct: 314 DLAVFN 319
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 2e-05
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPS 296
D + + F G L G + ++ E++ + +P D S
Sbjct: 290 LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMS 337
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.0 bits (115), Expect = 9e-07
Identities = 28/300 (9%), Positives = 75/300 (25%), Gaps = 22/300 (7%)
Query: 245 EIQAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDIPE-IDPSCIYFTV 302
I + + +P G+ A+ + +V E L +D+ + F
Sbjct: 28 TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA 87
Query: 303 NHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362
+ K L + + + + + + ++ + + +I L+W
Sbjct: 88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK-----AFEAPRQITMLAW 142
Query: 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
+++ L + + + + + P ++ + P + G +
Sbjct: 143 ARDGSKL-YGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP 201
Query: 423 AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482
+ +D D T + G + + + S
Sbjct: 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNV 261
Query: 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWN 542
S S DG + G ++ ++
Sbjct: 262 LESFDLEKNASIKRVPLPHSYYSVNVS--------------TDGSTVWLGGALGDLAAYD 307
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.0 bits (107), Expect = 8e-06
Identities = 20/193 (10%), Positives = 49/193 (25%), Gaps = 13/193 (6%)
Query: 366 NYLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
+Y+L+ + + + +V P + + + +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 423 AVLSCHVVDWVDIRQI------VTAVCYRPDGQGGIVGSMMGDCRFYNVSD---NHLELD 473
+++ + +D+ + PDG+ + + D
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAG 533
AE K ++IT + D SK+ D V + ++
Sbjct: 122 AETLSRRKAFEAPRQITMLAWAR-DGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180
Query: 534 EDSNVYMWNCIGH 546
+V
Sbjct: 181 AQPDVLAVWNQHE 193
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.0 bits (107), Expect = 9e-06
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291
S ++ S DG + G G + + E+ +VD+P
Sbjct: 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.8 bits (91), Expect = 8e-04
Identities = 13/122 (10%), Positives = 29/122 (23%), Gaps = 5/122 (4%)
Query: 346 PLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRV--FPHSNYVTCVHFN 403
HE G + + + + + + N
Sbjct: 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN 249
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463
P + + + + + V + +V DG +G +GD Y
Sbjct: 250 P---AKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAY 306
Query: 464 NV 465
+
Sbjct: 307 DA 308
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.3 bits (108), Expect = 7e-06
Identities = 27/285 (9%), Positives = 65/285 (22%), Gaps = 26/285 (9%)
Query: 251 GSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDIPEIDPSCIYF 300
G + + DG ++A A V ++ V +++ P F
Sbjct: 47 GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIE----LPDAPRF 102
Query: 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360
V + L D + + + + + R+L+ P +
Sbjct: 103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162
Query: 361 SWSKNNYLLSASIDKTVRLW-------RVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISG 413
++ L + ++ + +S + +
Sbjct: 163 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID 222
Query: 414 SIDGKVRIWAVLSCHVVDWVDI---RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470
G + + V Y + D + + +
Sbjct: 223 LSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV 282
Query: 471 EL-DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVRI 513
+ DA+ K I + + D + I
Sbjct: 283 VVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYI 327
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.1 bits (108), Expect = 9e-06
Identities = 12/194 (6%), Positives = 33/194 (17%), Gaps = 13/194 (6%)
Query: 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE---IDPSCIYFTVN 303
+ S AS V + + + +
Sbjct: 170 IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
S L+ S F + +
Sbjct: 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRS-------AGFQMVAKLKNTDGIMILT 282
Query: 364 KNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY--FISGSIDGKVRI 421
+ + + + + + D + + + + I
Sbjct: 283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQ-DGASDNYANSAGTEVLDI 341
Query: 422 WAVLSCHVVDWVDI 435
+ S V++
Sbjct: 342 YDAASDQDQSSVEL 355
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 41.3 bits (96), Expect = 3e-04
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 7/98 (7%)
Query: 364 KNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+N + ++ + L V V + Y DGKV +
Sbjct: 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMID 89
Query: 424 V--LSCHVVDWVDI----RQIVTAVCYRPDGQGGIVGS 455
+ V + I R I T+ + + I G+
Sbjct: 90 LWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA 127
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 39.0 bits (90), Expect = 0.002
Identities = 22/170 (12%), Positives = 50/170 (29%), Gaps = 6/170 (3%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE-IDPSCIYFTVNHLSELKPLFMD 314
+ S G+YL G DG V + + E T +I + I + E K
Sbjct: 67 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAG 126
Query: 315 KEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASID 374
+ + + + E+ H + S + ++++
Sbjct: 127 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH--PEPRVAAILASHYRPEFIVNVKET 184
Query: 375 KTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
+ L + + L+ ++ + YFI+ + +
Sbjct: 185 GKILLVDYTDLNNLKTTEISAERFLHDGGLDG-SHRYFITAANARNKLVV 233
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 40.2 bits (92), Expect = 6e-04
Identities = 26/247 (10%), Positives = 56/247 (22%), Gaps = 14/247 (5%)
Query: 370 SASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429
+ S + + V ++ P + +P +++ + V I + +V
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66
Query: 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489
+ V V PDG+ V +M + ++ S
Sbjct: 67 IATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPD 126
Query: 490 TGFQFLPQDSSKVMVSCADSQVRILQ------GPNVIGKYKDGKHIVSAGEDSNVYMWNC 543
++ + K + ++ P I DG + A DS
Sbjct: 127 GKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVID 186
Query: 544 IGHEEPAHD--------QAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSP 595
+ + + P
Sbjct: 187 TVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDP 246
Query: 596 ENLAFAP 602
+A P
Sbjct: 247 AGIAVTP 253
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 39.8 bits (91), Expect = 7e-04
Identities = 44/298 (14%), Positives = 79/298 (26%), Gaps = 41/298 (13%)
Query: 248 AHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLS 306
G + M SPD +YL + V +++ D+ P ++ H+S
Sbjct: 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG----SLTHIS 89
Query: 307 ELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366
+ + + S + S + +++ HS ++S
Sbjct: 90 -----TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHS---ANISPDNRT 141
Query: 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426
+ A + L+ V +D L + T P + +
Sbjct: 142 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH--------------MVFHPN 187
Query: 427 CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC 486
V+ V D G I D N SD P
Sbjct: 188 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR-------WAADIHITPD 240
Query: 487 KRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY-------KDGKHIVSAGEDSN 537
R V D V +G GK++++AG+ S+
Sbjct: 241 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSH 298
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 686 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.91 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.87 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.86 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.82 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.81 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.78 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.78 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.75 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.74 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.7 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.65 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.64 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.58 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.56 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.43 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.28 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.25 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.19 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.15 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.12 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.04 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.95 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.77 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.72 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.68 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.64 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.64 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.58 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.56 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.54 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.51 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.45 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.44 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.33 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.21 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.13 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.01 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.99 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.96 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.66 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.41 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.32 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.88 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.15 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.86 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.86 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.28 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.1 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.89 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 94.8 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.66 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 94.62 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 94.39 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.04 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.75 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 93.29 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 92.61 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 92.32 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 91.66 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 90.73 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 90.58 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 89.51 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 88.12 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 88.0 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 87.69 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 85.79 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 80.75 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-35 Score=309.32 Aligned_cols=269 Identities=16% Similarity=0.253 Sum_probs=230.9
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+ .+|++++.++++|+ |+.|+||++...... .........+|.+.|++++|+|+|++|++|+.||+|++||
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~--~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd 125 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK--SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC--SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc--ceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccc
Confidence 455544 46778888999987 899999998754321 1111234567999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+..... +....+.+|...|.
T Consensus 126 ~~~~~~------------------------------------------------------------~~~~~~~~~~~~v~ 145 (337)
T d1gxra_ 126 LAAPTP------------------------------------------------------------RIKAELTSSAPACY 145 (337)
T ss_dssp CCCC--------------------------------------------------------------EEEEEEECSSSCEE
T ss_pred cccccc------------------------------------------------------------cccccccccccccc
Confidence 865431 12345667999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccC
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR 436 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~ 436 (686)
+++|+|++ +|++++.|+.|++|++.++++..... |...|++++|+| ++.++++|+.|+.|++||+++++.+....+.
T Consensus 146 ~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~ 224 (337)
T d1gxra_ 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFT 224 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccceeecccccc
Confidence 99999999 99999999999999999999888777 899999999999 9999999999999999999999999888999
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
..|++++|+|+++++++|+.||.+++||+....... ...|...|++++|+| ++++|++++.|+.|++||.
T Consensus 225 ~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---------~~~~~~~i~~v~~s~-~g~~l~s~s~Dg~i~iwd~ 294 (337)
T d1gxra_ 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ---------LHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE---------ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred cceEEEEEcccccccceecccccccccccccccccc---------ccccccccceEEECC-CCCEEEEEeCCCeEEEEEC
Confidence 999999999999999999999999999998776432 245678899999999 7889999999999999996
Q ss_pred Cc--------------ceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 517 PN--------------VIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 517 ~~--------------~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
.+ .++++|++++|+||+.||+|+|||+
T Consensus 295 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 295 PYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 53 3678999999999999999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-34 Score=306.38 Aligned_cols=281 Identities=18% Similarity=0.279 Sum_probs=218.3
Q ss_pred cceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCC
Q 005646 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDP 295 (686)
Q Consensus 216 l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~ 295 (686)
.+.+..++...+|+...... +. . ......+|++.|+||+|+|||++||||+ |++|+|||+.+++.+..+.......
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~-~~-~-~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~ 106 (388)
T d1erja_ 31 ALKKQTNDYYILYNPALPRE-ID-V-ELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN 106 (388)
T ss_dssp TSEEECSSCEEEECTTSCCC-EE-E-EEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----
T ss_pred ccccCCCCcEEEeCCCCCcc-ee-e-eeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccc
Confidence 45677788888997543221 11 0 1122346999999999999999999987 8999999999988776665332110
Q ss_pred cceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECC
Q 005646 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASID 374 (686)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~D 374 (686)
... .........+|...|.+++|+|++ +|++|+.|
T Consensus 107 ~~~--------------------------------------------~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~d 142 (388)
T d1erja_ 107 KDP--------------------------------------------ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED 142 (388)
T ss_dssp --------------------------------------------------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred ccc--------------------------------------------cccccccccCCCCCEEEEEECCCCCcceecccc
Confidence 000 001123345688999999999999 99999999
Q ss_pred CcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEcc-CCCEEE
Q 005646 375 KTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQGGI 452 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp-dg~~l~ 452 (686)
++|++||...++.+..+. |...|++++|++ ++..+++++.++.|++||+.+........+......+.+.+ ++++|+
T Consensus 143 g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 221 (388)
T d1erja_ 143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 221 (388)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEE
T ss_pred ccccccccccccccccccccccccccccccc-ccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEE
Confidence 999999999999988887 999999999999 99999999999999999999998887777776666776665 889999
Q ss_pred EEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------
Q 005646 453 VGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP--------------- 517 (686)
Q Consensus 453 ~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~--------------- 517 (686)
+|+.||.|++||+.++.......... .....|...|++++|+| ++.+|++++.|+.|++||..
T Consensus 222 ~~~~d~~i~i~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 299 (388)
T d1erja_ 222 AGSLDRAVRVWDSETGFLVERLDSEN-ESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299 (388)
T ss_dssp EEETTSCEEEEETTTCCEEEEEC-------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------C
T ss_pred EEcCCCeEEEeecccCccceeecccc-ccccCCCCCEEEEEECC-CCCEEEEEECCCcEEEEeccCCccccccccccccc
Confidence 99999999999999877654332211 12346778999999999 88999999999999999864
Q ss_pred ------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 518 ------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 518 ------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..++++|++++|++|+.||.|+|||+.+++
T Consensus 300 ~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~ 341 (388)
T d1erja_ 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 341 (388)
T ss_dssp EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred eeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 236788899999999999999999998765
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.4e-35 Score=300.58 Aligned_cols=269 Identities=20% Similarity=0.252 Sum_probs=222.8
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
-+.+++++++.++.+. ++.|.+|++..... .+.+.+|...|++++|+|+|++||||+.||+|+|||+.++..
T Consensus 21 ~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~-------~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~ 92 (311)
T d1nr0a1 21 VVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD-------TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 92 (311)
T ss_dssp CCCEECTTSSEEEEEE-TTEEEEEETTCSSC-------CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred EEEEEcCCCCEEEEEe-CCEEEEEECCCCce-------eEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc
Confidence 3467788888888874 66799998865422 345788999999999999999999999999999999987652
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
. ....+.+|...|.+++|+|
T Consensus 93 ~------------------------------------------------------------~~~~~~~~~~~v~~v~~s~ 112 (311)
T d1nr0a1 93 I------------------------------------------------------------LKTTIPVFSGPVKDISWDS 112 (311)
T ss_dssp C------------------------------------------------------------EEEEEECSSSCEEEEEECT
T ss_pred c------------------------------------------------------------cccccccccCccccccccc
Confidence 1 1234567999999999999
Q ss_pred CC-EEEEEEC--CCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCC-EEEEEEcCCcEEEEecCCCcEEE-EeccCCc
Q 005646 365 NN-YLLSASI--DKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDN-YFISGSIDGKVRIWAVLSCHVVD-WVDIRQI 438 (686)
Q Consensus 365 ~~-~L~s~s~--Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~-~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~ 438 (686)
++ +|++++. +..++||++.+++.+..+. |...|++++|+| +++ .|++|+.||.|++||+++++... ...|...
T Consensus 113 d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~-~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~ 191 (311)
T d1nr0a1 113 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF 191 (311)
T ss_dssp TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-cceeeeccccccccccccccccccccccccccccc
Confidence 99 8888875 5679999999999888887 999999999999 665 58899999999999999988774 4467889
Q ss_pred EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 439 V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
|++++|+|+++++++++.||.|++||+.++......+. ......+|...|++++|+| ++++|++++.|+.|+|||..+
T Consensus 192 i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~-~~~~~~~h~~~V~~~~~s~-~~~~l~tgs~Dg~v~iwd~~t 269 (311)
T d1nr0a1 192 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED-DSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVAT 269 (311)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC-TTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred ccccccCccccccccccccccccccccccccccccccc-cccccccccccccccccCC-CCCEEEEEeCCCeEEEEECCC
Confidence 99999999999999999999999999988765432221 1122356788999999999 789999999999999999764
Q ss_pred c----------------eeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 519 V----------------IGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 519 ~----------------~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
. +.+.+++++|++++.||.|++||++
T Consensus 270 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 270 LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred CcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 2 2344478899999999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-33 Score=294.28 Aligned_cols=231 Identities=15% Similarity=0.244 Sum_probs=197.8
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeecc
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (686)
.|...|++++|+|+|++||||+ ||.|+|||+.++.....
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~---------------------------------------- 87 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP---------------------------------------- 87 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC----------------------------------------
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccce----------------------------------------
Confidence 6999999999999999999997 89999999977542111
Q ss_pred CCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCC--eeeeEee-CCCCeEEEEEe
Q 005646 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND--HCLRVFP-HSNYVTCVHFN 403 (686)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~--~~~~~~~-h~~~V~~v~fs 403 (686)
.......+|.+.|.+++|+|++ +|++++.|++|++||+... +....+. |...|.+++|+
T Consensus 88 -----------------~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 150 (337)
T d1gxra_ 88 -----------------VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS 150 (337)
T ss_dssp -----------------SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC
T ss_pred -----------------eEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccc
Confidence 0123345799999999999999 9999999999999998755 4445555 88999999999
Q ss_pred ecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc
Q 005646 404 PVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482 (686)
Q Consensus 404 p~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 482 (686)
| ++.++++++.|+.|++||+.++++. ....+...|++++|+++++.+++++.||.+++||+.+++....
T Consensus 151 ~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~--------- 220 (337)
T d1gxra_ 151 P-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ--------- 220 (337)
T ss_dssp T-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE---------
T ss_pred c-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeecc---------
Confidence 9 9999999999999999999998876 4456788999999999999999999999999999998875431
Q ss_pred cCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC--------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP--------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 483 ~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~--------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..+...|++++|+| ++..+++++.|+.|++||.. +.++++|++++|++|+.||.|++||+.+++
T Consensus 221 ~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~ 298 (337)
T d1gxra_ 221 HDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp EECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred cccccceEEEEEcc-cccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC
Confidence 12457799999999 78999999999999999964 346789999999999999999999988754
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-32 Score=291.00 Aligned_cols=280 Identities=20% Similarity=0.335 Sum_probs=220.4
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCcccccc-----------ccccCceecccCCceEEEEEeeCCCEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELS-----------ALYKGQEIQAHDGSILTMKFSPDGQYLAS 267 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~-----------~~~~~~~l~~H~~~I~~l~fspdg~~Las 267 (686)
+|...+ .+|+++|+++++|+ |+.|+||++........ .........+|...|++++|+|+|++|++
T Consensus 60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s 138 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 138 (388)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence 455555 45677888999886 89999999865432110 01112234578899999999999999999
Q ss_pred EeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCe
Q 005646 268 AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPL 347 (686)
Q Consensus 268 gs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (686)
|+.||.|++|+...++ .+
T Consensus 139 ~~~dg~v~i~~~~~~~--------------------------------------------------------------~~ 156 (388)
T d1erja_ 139 GAEDRLIRIWDIENRK--------------------------------------------------------------IV 156 (388)
T ss_dssp EETTSCEEEEETTTTE--------------------------------------------------------------EE
T ss_pred cccccccccccccccc--------------------------------------------------------------cc
Confidence 9999999999987765 23
Q ss_pred EEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC
Q 005646 348 HEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 348 ~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~ 426 (686)
..+.+|...|.++.|++++ .+++++.++.|++||+.+..+.....+.....++.++|.++++|++|+.||.|++||+.+
T Consensus 157 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 236 (388)
T d1erja_ 157 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 236 (388)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred cccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeeccc
Confidence 4556799999999999998 999999999999999999999988888888888888887899999999999999999998
Q ss_pred CcEEEEe--------ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeE----EeeccccCCCCCeEEEEE
Q 005646 427 CHVVDWV--------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI----CVHSKKKAPCKRITGFQF 494 (686)
Q Consensus 427 ~~~~~~~--------~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~I~~l~f 494 (686)
+..+... .|...|++++|+|++++|++|+.||.|++||+.+......... ........|...|++++|
T Consensus 237 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 316 (388)
T d1erja_ 237 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316 (388)
T ss_dssp CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEE
T ss_pred CccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEE
Confidence 8765432 4678899999999999999999999999999987654322111 111123456788999999
Q ss_pred eCCCCCeEEEEeCCCcEEEEeCCcc---------------------eeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 495 LPQDSSKVMVSCADSQVRILQGPNV---------------------IGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 495 sp~~~~~l~~~s~D~~I~iwd~~~~---------------------~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
+| ++.+|++++.|+.|++||..+. ..++|++++||||+.||+|+||+++
T Consensus 317 s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 317 TQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp CG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CC-CCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 99 7899999999999999997532 1356799999999999999999974
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.5e-32 Score=279.50 Aligned_cols=305 Identities=20% Similarity=0.307 Sum_probs=233.7
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
...|+||.++|++|+|+|++++||||+.||+|+|||+.+++
T Consensus 10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~--------------------------------------- 50 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD--------------------------------------- 50 (317)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC---------------------------------------
T ss_pred cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC---------------------------------------
Confidence 35789999999999999999999999999999999998765
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v 400 (686)
.+..+.+|...|.+++|+|++ +++++..++++.+|+....+....+. |...+.++
T Consensus 51 -----------------------~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (317)
T d1vyhc1 51 -----------------------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV 107 (317)
T ss_dssp -----------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEE
T ss_pred -----------------------EEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceee
Confidence 456677899999999999999 99999999999999999888777766 89999999
Q ss_pred EEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEee
Q 005646 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (686)
Q Consensus 401 ~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~ 479 (686)
.|+| +++++++++.|+.+++||+++++.+ .+..+...+.+++|+|++++|++++.||.|++|++.+......
T Consensus 108 ~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~------ 180 (317)
T d1vyhc1 108 SIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE------ 180 (317)
T ss_dssp EECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE------
T ss_pred eccC-CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEE------
Confidence 9999 9999999999999999999998876 4556888999999999999999999999999999988765432
Q ss_pred ccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccc
Q 005646 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRS 559 (686)
Q Consensus 480 ~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~ 559 (686)
...+...+..+.|+| +...+......+.. .......+.++++|+.|+.|++|++.+++ .+..
T Consensus 181 --~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--------~~~~ 242 (317)
T d1vyhc1 181 --LREHRHVVECISWAP-ESSYSSISEATGSE-------TKKSGKPGPFLLSGSRDKTIKMWDVSTGM--------CLMT 242 (317)
T ss_dssp --ECCCSSCEEEEEECC-SCGGGGGGGCCSCC--------------CCEEEEEETTSEEEEEETTTTE--------EEEE
T ss_pred --EecCCCCceEEEEee-ccccceeeccccce-------eeeeccCCceeEeccCCCEEEEEECCCCc--------EEEE
Confidence 234667799999999 33333222222221 22334478999999999999999998764 2222
Q ss_pred cccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccc
Q 005646 560 LERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASA 639 (686)
Q Consensus 560 ~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~ 639 (686)
+..+. .....++++|+ +..+++++.|+.+.+|+.++......+. +
T Consensus 243 ~~~~~----------------------------~~v~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~ 287 (317)
T d1vyhc1 243 LVGHD----------------------------NWVRGVLFHSG----GKFILSCADDKTLRVWDYKNKRCMKTLN---A 287 (317)
T ss_dssp EECCS----------------------------SCEEEEEECSS----SSCEEEEETTTEEEEECCTTSCCCEEEE---C
T ss_pred EeCCC----------------------------CCEEEEEECCC----CCEEEEEECCCeEEEEECCCCcEEEEEc---C
Confidence 21111 11223566777 5566778889999999976655333221 0
Q ss_pred cchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEe
Q 005646 640 LHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 678 (686)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~ 678 (686)
|. ....++ ..+++|.+|||||.||+||+|+
T Consensus 288 ----h~----~~V~~~-~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 288 ----HE----HFVTSL-DFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp ----CS----SCEEEE-EECSSSSCEEEEETTSEEEEEC
T ss_pred ----CC----CCEEEE-EEcCCCCEEEEEeCCCeEEEeC
Confidence 00 011222 2456689999999999999995
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.5e-32 Score=274.27 Aligned_cols=275 Identities=22% Similarity=0.378 Sum_probs=233.0
Q ss_pred HHhhcccceeeecccCccee--eecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEE
Q 005646 189 WFSRLRSLACVVDKQGEGER--VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLA 266 (686)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~--~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La 266 (686)
|..+......+..|...+.+ |+++++++++|+.|+.|+||++..... ..++.+|...|++++|+|++.+++
T Consensus 3 w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~-------~~~~~~h~~~V~~~~~~~~~~~~~ 75 (317)
T d1vyhc1 3 WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-------ERTLKGHTDSVQDISFDHSGKLLA 75 (317)
T ss_dssp CCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-------CEEECCCSSCEEEEEECTTSSEEE
T ss_pred cCCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCE-------EEEEeCCCCcEEEEeeeccccccc
Confidence 44444444445567777755 556778999999999999999865432 356889999999999999999999
Q ss_pred EEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCC
Q 005646 267 SAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346 (686)
Q Consensus 267 sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (686)
+++.++.+.+|+....+ .
T Consensus 76 ~~~~~~~~~~~~~~~~~--------------------------------------------------------------~ 93 (317)
T d1vyhc1 76 SCSADMTIKLWDFQGFE--------------------------------------------------------------C 93 (317)
T ss_dssp EEETTSCCCEEETTSSC--------------------------------------------------------------E
T ss_pred ccccccccccccccccc--------------------------------------------------------------c
Confidence 99999999999976654 2
Q ss_pred eEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEec
Q 005646 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (686)
Q Consensus 347 ~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~ 424 (686)
...+.+|...+.++.|++++ .+++++.|+.+++||+.+++.+..+. |...+.+++|+| ++++|++++.|+.|++|++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~~~~~ 172 (317)
T d1vyhc1 94 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVV 172 (317)
T ss_dssp EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEET
T ss_pred ccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeeccc-CCCEEEEEeCCCeEEEEee
Confidence 23345688999999999999 99999999999999999999998887 999999999999 9999999999999999999
Q ss_pred CCCcEE-EEeccCCcEEEEEEccCC--------------------CEEEEEecCCcEEEEeCCCCeeeeeeeEEeecccc
Q 005646 425 LSCHVV-DWVDIRQIVTAVCYRPDG--------------------QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (686)
Q Consensus 425 ~~~~~~-~~~~~~~~V~~v~~spdg--------------------~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 483 (686)
.+++.+ .+..+...+.+++|+|++ ..+++++.||.|++||+.++++... ..
T Consensus 173 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~--------~~ 244 (317)
T d1vyhc1 173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT--------LV 244 (317)
T ss_dssp TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE--------EE
T ss_pred ccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEE--------Ee
Confidence 998876 455678889999998754 4688999999999999998876432 23
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
.|...|++++|+| ++.+|++++.|+.|++||..+ .++|+|++++|+||+.||+|+|||
T Consensus 245 ~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 245 GHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 4668899999999 789999999999999999642 367899999999999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.1e-32 Score=289.12 Aligned_cols=235 Identities=14% Similarity=0.224 Sum_probs=190.8
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.+.+|++++..+|+|+.++.|+||+...... .....+++|.++|++|+|+|++++|+||+.|++|+|||+.++..
T Consensus 11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-----~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEETTEE-----EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCCE-----EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence 3467888999999999999999999765332 22456889999999999999999999999999999999987652
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
. +...+.+|...|.+++|+|
T Consensus 86 ~------------------------------------------------------------~~~~~~~~~~~v~~i~~~p 105 (371)
T d1k8kc_ 86 K------------------------------------------------------------PTLVILRINRAARCVRWAP 105 (371)
T ss_dssp E------------------------------------------------------------EEEECCCCSSCEEEEEECT
T ss_pred c------------------------------------------------------------ccccccccccccccccccc
Confidence 2 2334457889999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeEe----e-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc----------
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRVF----P-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH---------- 428 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~~----~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~---------- 428 (686)
++ .|++++.|++|++|++......... . |...|++++|+| ++.+|++|+.|++|++||+....
T Consensus 106 ~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~ 184 (371)
T d1k8kc_ 106 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184 (371)
T ss_dssp TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTT
T ss_pred ccccceeecccCcceeeeeecccccccccccccccccccccccccc-cccceeccccCcEEEEEeeccCccccccccccc
Confidence 99 9999999999999998766433222 2 889999999999 99999999999999999986432
Q ss_pred ---------EEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 429 ---------VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 429 ---------~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
......|...|++++|+|+|++|++++.||.|++||+..+..... ...|..+|.+++|+| ++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~--------~~~~~~~v~s~~fs~-d~ 255 (371)
T d1k8kc_ 185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT--------LASETLPLLAVTFIT-ES 255 (371)
T ss_dssp BSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE--------EECSSCCEEEEEEEE-TT
T ss_pred cccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceee--------eecccccceeeeecC-CC
Confidence 223446778899999999999999999999999999987654331 234567899999999 66
Q ss_pred CeEEEEeCCCcEEEEe
Q 005646 500 SKVMVSCADSQVRILQ 515 (686)
Q Consensus 500 ~~l~~~s~D~~I~iwd 515 (686)
.+|+ ++.|+.+++|.
T Consensus 256 ~~la-~g~d~~~~~~~ 270 (371)
T d1k8kc_ 256 SLVA-AGHDCFPVLFT 270 (371)
T ss_dssp EEEE-EETTSSCEEEE
T ss_pred CEEE-EEcCCceEEEE
Confidence 5555 55578777764
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.4e-32 Score=285.93 Aligned_cols=236 Identities=15% Similarity=0.247 Sum_probs=191.7
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
+..+|+|++|+|||++||+|+.||.|+|||+.+++.
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-------------------------------------------- 41 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-------------------------------------------- 41 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE--------------------------------------------
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE--------------------------------------------
Confidence 457899999999999999999999999999987652
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEee
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNP 404 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp 404 (686)
..+..+++|.++|.+|+|+|++ +|++++.|++|+|||+.++.....+. |...|++++|+|
T Consensus 42 ----------------~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p 105 (371)
T d1k8kc_ 42 ----------------VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 105 (371)
T ss_dssp ----------------EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT
T ss_pred ----------------EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccccccc
Confidence 1346678999999999999999 99999999999999998876554432 888999999999
Q ss_pred cCCCEEEEEEcCCcEEEEecCCCcEE-----EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeE---
Q 005646 405 VDDNYFISGSIDGKVRIWAVLSCHVV-----DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI--- 476 (686)
Q Consensus 405 ~~~~~l~sgs~Dg~V~iwd~~~~~~~-----~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~--- 476 (686)
++++|++|+.|++|++|++...... ....|...|++++|+|++++|++|+.||.|++||+...........
T Consensus 106 -~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~ 184 (371)
T d1k8kc_ 106 -NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184 (371)
T ss_dssp -TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTT
T ss_pred -ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccc
Confidence 9999999999999999998765422 2234678899999999999999999999999999865432111000
Q ss_pred -------EeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------cceeEcCCCCEEEEEeC
Q 005646 477 -------CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP---------------NVIGKYKDGKHIVSAGE 534 (686)
Q Consensus 477 -------~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~---------------~~~~~~~dg~~l~sgs~ 534 (686)
........|...|.+++|+| ++..|++++.|+.|++||.. ..++|+|++++|++|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~- 262 (371)
T d1k8kc_ 185 GSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH- 262 (371)
T ss_dssp BSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-
T ss_pred cccccceeeeeeccCccCcEEEEEeec-ccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-
Confidence 01112345778899999999 78999999999999999953 2367889998888765
Q ss_pred CCcEEEEeCCCCC
Q 005646 535 DSNVYMWNCIGHE 547 (686)
Q Consensus 535 Dg~V~iWd~~~~~ 547 (686)
|+.+++|..+...
T Consensus 263 d~~~~~~~~~~~~ 275 (371)
T d1k8kc_ 263 DCFPVLFTYDSAA 275 (371)
T ss_dssp TSSCEEEEEETTT
T ss_pred CCceEEEEeeCCC
Confidence 7888888776543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.4e-31 Score=272.56 Aligned_cols=279 Identities=18% Similarity=0.317 Sum_probs=208.0
Q ss_pred eecccCccee--eecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 005646 199 VVDKQGEGER--VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (686)
Q Consensus 199 ~~~~~~~~~~--~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~v 276 (686)
+..|...+.+ |+++++++++|+.||.|+||+...... .+.+.+|..+|++++|+|++++|++|+.|+.+++
T Consensus 51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~-------~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~ 123 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-------VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-------EEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccccee-------EEEEecccccEEeeEeeccceeeeeecccceeec
Confidence 3357776654 567788999999999999999875432 3557789999999999999999999999999999
Q ss_pred EEeecCeeeee----eccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc
Q 005646 277 WQVVEDERLTE----VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (686)
Q Consensus 277 Wd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (686)
|+......... +..+...... ........... ...+.....+... ..........
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~ 182 (340)
T d1tbga_ 124 YNLKTREGNVRVSRELAGHTGYLSC-------------CRFLDDNQIVT----SSGDTTCALWDIE----TGQQTTTFTG 182 (340)
T ss_dssp EESSSSCSCCCEEEEECCCSSCEEE-------------EEEEETTEEEE----EETTTEEEEEETT----TTEEEEEEEC
T ss_pred ccccccccccccceecccccccccc-------------ccccccccccc----ccccccccccccc----cccccccccc
Confidence 99766542221 1111110000 00000000000 0001111111110 0123344556
Q ss_pred CCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 353 HSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 353 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
+...+....+.+.+ ++++++.|+.|++||+++++++..+. |...|++++|+| ++++|++|+.||.|++||++....+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~ 261 (340)
T d1tbga_ 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQEL 261 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE
T ss_pred cceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccc
Confidence 77888999999888 99999999999999999999999988 999999999999 9999999999999999999998876
Q ss_pred EEe---ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 431 DWV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 431 ~~~---~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
... .+...|++++|+|++++|++|+.||.|++||+.++++... ..+|..+|++++|+|
T Consensus 262 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~--------~~~H~~~V~~l~~s~----------- 322 (340)
T d1tbga_ 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV--------LAGHDNRVSCLGVTD----------- 322 (340)
T ss_dssp EEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEE--------ECCCSSCEEEEEECT-----------
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEE--------EcCCCCCEEEEEEeC-----------
Confidence 544 4566799999999999999999999999999988765431 345778999999999
Q ss_pred CCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 508 DSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 508 D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
++++|+||+.||+|+|||
T Consensus 323 -----------------d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 323 -----------------DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -----------------TSSCEEEEETTSCEEEEC
T ss_pred -----------------CCCEEEEEccCCEEEEeC
Confidence 777778888888888886
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.7e-31 Score=269.65 Aligned_cols=273 Identities=19% Similarity=0.231 Sum_probs=205.6
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeec-cCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD-IPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
+.++||.++|++|+|+|+|++||||+.||+|++||+.+++.+..+. .+...+.++.+.+ ++....
T Consensus 6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~-------------~g~~~~- 71 (299)
T d1nr0a2 6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS-------------KGDLFT- 71 (299)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-------------TSCEEE-
T ss_pred eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeec-------------cceeec-
Confidence 5789999999999999999999999999999999999988776654 2333334444433 221111
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHF 402 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~f 402 (686)
.+.+..+.+|+....... ........|...+.+++|++++.+++++.++.+++|+... .........+++++|
T Consensus 72 ---~~~d~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~ 144 (299)
T d1nr0a2 72 ---VSWDDHLKVVPAGGSGVD-SSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK---LTEVPISYNSSCVAL 144 (299)
T ss_dssp ---EETTTEEEEECSSSSSSC-TTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE---EEEEECSSCEEEEEE
T ss_pred ---ccceeeEEEeccCCcccc-cccccccccccccccccccccccccccccccccccccccc---ccccccccccccccc
Confidence 112233333433211111 1222334577889999999999555555678999998542 223345667899999
Q ss_pred eecCCCEEEEEEcCCcEEEEecCCCcEE--EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeec
Q 005646 403 NPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (686)
Q Consensus 403 sp~~~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~ 480 (686)
+| ++++|++|+.||.|++||+.+++.. ....|...|++++|+|++++|++++.||.|++||+.++..... ..
T Consensus 145 s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~-----~~ 218 (299)
T d1nr0a2 145 SN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH-----TN 218 (299)
T ss_dssp CT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC-----CC
T ss_pred cc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cc
Confidence 99 9999999999999999999988754 4557889999999999999999999999999999987654321 12
Q ss_pred cccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-----------------eeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-----------------IGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 481 ~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~-----------------~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
....|...|++++|+| ++.+|++++.|+.|++||..+. ..+++++++|+||+.|++|+|||+
T Consensus 219 ~~~~h~~~v~~l~~s~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 219 SWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp CCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred cccccccccccccccc-cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEec
Confidence 2455778999999999 8899999999999999996531 235568899999999999999998
Q ss_pred C
Q 005646 544 I 544 (686)
Q Consensus 544 ~ 544 (686)
.
T Consensus 298 ~ 298 (299)
T d1nr0a2 298 P 298 (299)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=3.5e-30 Score=265.28 Aligned_cols=234 Identities=15% Similarity=0.236 Sum_probs=194.6
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC--CCcEEEEEeecCee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD--DGVVRLWQVVEDER 284 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~--Dg~I~vWd~~~~~~ 284 (686)
.+|+++++++++|+.|+.|+||++........ ..+.+|.++|.+++|+|++++|++++. +..++||++.+++
T Consensus 64 ~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~- 137 (311)
T d1nr0a1 64 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILK-----TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT- 137 (311)
T ss_dssp EEECTTSSEEEEEETTSEEEEEESSSTTCCEE-----EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC-
T ss_pred EEEeCCCCeEeccccCceEeeeeeeccccccc-----cccccccCcccccccccccccccccccccccccccccccccc-
Confidence 56778999999999999999999876544322 346789999999999999999999986 4669999998765
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
+...+.+|...|.+++|+|
T Consensus 138 -------------------------------------------------------------~~~~l~~h~~~v~~v~~~~ 156 (311)
T d1nr0a1 138 -------------------------------------------------------------SNGNLTGQARAMNSVDFKP 156 (311)
T ss_dssp -------------------------------------------------------------BCBCCCCCSSCEEEEEECS
T ss_pred -------------------------------------------------------------ccccccccccccccccccc
Confidence 2344567999999999999
Q ss_pred CC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe--------
Q 005646 365 NN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-------- 433 (686)
Q Consensus 365 ~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-------- 433 (686)
++ .|++|+.|++|++||++++++...+. |...|+++.|+| ++++|++++.|+.|++||+.++..+...
T Consensus 157 ~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~ 235 (311)
T d1nr0a1 157 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 235 (311)
T ss_dssp SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSC
T ss_pred cceeeecccccccccccccccccccccccccccccccccccCc-cccccccccccccccccccccccccccccccccccc
Confidence 88 68899999999999999999998887 899999999999 9999999999999999999988766433
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
.|...|++++|+|+|++|++|+.||.|+|||++++++..... .+ ......+.++.|+ +..+++++.||.|++
T Consensus 236 ~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~--~~---~~~~~~~~~~~~~---~~~l~s~s~dG~i~~ 307 (311)
T d1nr0a1 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP--VG---TRIEDQQLGIIWT---KQALVSISANGFINF 307 (311)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CC---SSGGGCEEEEEEC---SSCEEEEETTCCEEE
T ss_pred cccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEE--CC---CCccceEEEEEec---CCEEEEEECCCEEEE
Confidence 367789999999999999999999999999999987654221 11 1112234455554 468999999999999
Q ss_pred EeC
Q 005646 514 LQG 516 (686)
Q Consensus 514 wd~ 516 (686)
||.
T Consensus 308 wd~ 310 (311)
T d1nr0a1 308 VNP 310 (311)
T ss_dssp EET
T ss_pred EeC
Confidence 996
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.6e-30 Score=266.43 Aligned_cols=229 Identities=19% Similarity=0.302 Sum_probs=181.0
Q ss_pred CceecccCCce-EEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 243 GQEIQAHDGSI-LTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 243 ~~~l~~H~~~I-~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
..+|+||...| +|+ ++++++||||+.||+|+|||+.+++
T Consensus 5 ~~tL~GH~~~vitc~--~~~~~~l~tgs~Dg~i~vWd~~~~~-------------------------------------- 44 (355)
T d1nexb2 5 RTTLRGHMTSVITCL--QFEDNYVITGADDKMIRVYDSINKK-------------------------------------- 44 (355)
T ss_dssp EEEEECCSSSCEEEE--EEETTEEEEEETTTEEEEEETTTTE--------------------------------------
T ss_pred cEEECCcCCCcEEEE--EECCCEEEEEeCCCeEEEEECCCCc--------------------------------------
Confidence 35689999886 555 4568899999999999999998775
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee---CCCCeE
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVT 398 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~ 398 (686)
++.++.+|.+.|.+++|+|+++|++++.|++|++|++...++..... +...+.
T Consensus 45 ------------------------~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~ 100 (355)
T d1nexb2 45 ------------------------FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 100 (355)
T ss_dssp ------------------------EEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred ------------------------EEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccccccccccccccccccccc
Confidence 35667789999999999998899999999999999999998887766 334455
Q ss_pred EEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe------------------------ccCCcEEEEEEccCCCEEEEE
Q 005646 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV------------------------DIRQIVTAVCYRPDGQGGIVG 454 (686)
Q Consensus 399 ~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~------------------------~~~~~V~~v~~spdg~~l~~g 454 (686)
.+.+.| ++.++++++.|+.|++||+.+...+... .+... ...+.+++++++++
T Consensus 101 ~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~ 177 (355)
T d1nexb2 101 DIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS--VRTVSGHGNIVVSG 177 (355)
T ss_dssp EEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSC--EEEEEEETTEEEEE
T ss_pred cccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccc--ccccccccceeeee
Confidence 666777 8899999999999999999876433211 11122 24566788999999
Q ss_pred ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-------------ee
Q 005646 455 SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-------------IG 521 (686)
Q Consensus 455 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~-------------~~ 521 (686)
..|+.|++||+.+++.... ...+...+.++.|+| ++..+++++.|+.|++||..+. .+
T Consensus 178 ~~d~~i~~~d~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~ 248 (355)
T d1nexb2 178 SYDNTLIVWDVAQMKCLYI--------LSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGL 248 (355)
T ss_dssp ETTSCEEEEETTTTEEEEE--------ECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCE
T ss_pred cccceeeeeecccccceee--------eeccccccccccccc-cceeeecccccceEEeeeccccccccccccccccccc
Confidence 9999999999988765431 234556789999999 7899999999999999997643 12
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 522 KYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 522 ~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+..++++|++|+.||.|++||+.+..
T Consensus 249 ~~~~~~~l~~~~~dg~i~iwd~~~~~ 274 (355)
T d1nexb2 249 LRLSDKFLVSAAADGSIRGWDANDYS 274 (355)
T ss_dssp EEECSSEEEEECTTSEEEEEETTTCC
T ss_pred cccccceeeeeecccccccccccccc
Confidence 33378999999999999999998754
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.6e-29 Score=260.80 Aligned_cols=269 Identities=17% Similarity=0.350 Sum_probs=217.9
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.++|+||.++|++|+|+|++++||||+.||+|+|||+.+++
T Consensus 48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~--------------------------------------- 88 (340)
T d1tbga_ 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN--------------------------------------- 88 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE---------------------------------------
T ss_pred eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccce---------------------------------------
Confidence 35789999999999999999999999999999999998876
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCe----eeeEee-CCCC
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH----CLRVFP-HSNY 396 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~----~~~~~~-h~~~ 396 (686)
.+..+.+|...|.+++|+|++ +|++++.|+++++|+..... ....+. |...
T Consensus 89 -----------------------~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~ 145 (340)
T d1tbga_ 89 -----------------------KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY 145 (340)
T ss_dssp -----------------------EEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSC
T ss_pred -----------------------eEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccc
Confidence 345566799999999999999 99999999999999987653 333444 6666
Q ss_pred eEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeee
Q 005646 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE 475 (686)
Q Consensus 397 V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~ 475 (686)
....... ....++....|.....+........ ....+...+....+.+.+.++++|+.|+.|++||+.++++...
T Consensus 146 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~-- 221 (340)
T d1tbga_ 146 LSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-- 221 (340)
T ss_dssp EEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE--
T ss_pred ccccccc--cccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEE--
Confidence 6665555 4678888899999999998877655 4556677899999999999999999999999999998875432
Q ss_pred EEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-----------------ceeEcCCCCEEEEEeCCCcE
Q 005646 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-----------------VIGKYKDGKHIVSAGEDSNV 538 (686)
Q Consensus 476 ~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-----------------~~~~~~dg~~l~sgs~Dg~V 538 (686)
...|...|++++|+| ++.+|++++.|+.|++|+... .++++|++++|++|+.||.|
T Consensus 222 ------~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i 294 (340)
T d1tbga_ 222 ------FTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294 (340)
T ss_dssp ------ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCE
T ss_pred ------EeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEE
Confidence 235678899999999 889999999999999999642 36788999999999999999
Q ss_pred EEEeCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCC
Q 005646 539 YMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPK 618 (686)
Q Consensus 539 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~ 618 (686)
+|||+.+++ .+..+..+. .....++|+|| +..+++++.|+
T Consensus 295 ~iwd~~~~~--------~~~~~~~H~----------------------------~~V~~l~~s~d----~~~l~s~s~Dg 334 (340)
T d1tbga_ 295 NVWDALKAD--------RAGVLAGHD----------------------------NRVSCLGVTDD----GMAVATGSWDS 334 (340)
T ss_dssp EEEETTTCC--------EEEEECCCS----------------------------SCEEEEEECTT----SSCEEEEETTS
T ss_pred EEEECCCCc--------EEEEEcCCC----------------------------CCEEEEEEeCC----CCEEEEEccCC
Confidence 999998765 122221110 11234567888 55677888999
Q ss_pred CCCCCC
Q 005646 619 GCATWP 624 (686)
Q Consensus 619 ~~~~W~ 624 (686)
.+++|+
T Consensus 335 ~v~iWd 340 (340)
T d1tbga_ 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=5.4e-29 Score=257.80 Aligned_cols=270 Identities=19% Similarity=0.217 Sum_probs=202.2
Q ss_pred ceeeecCCCccceeeccc-eEEEEEcCCccccccccccCceeccc-CCceEEEEEee--CCCEEEEEeCCCcEEEEEeec
Q 005646 206 GERVRLNEEDAMFCSKVQ-RVKVYHCKKRSKELSALYKGQEIQAH-DGSILTMKFSP--DGQYLASAGDDGVVRLWQVVE 281 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~-~v~vw~~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fsp--dg~~Lasgs~Dg~I~vWd~~~ 281 (686)
..++.++++.++.++.+. .|+.|+..... ......+.+| ...|++++|+| +|++||||+.||+|+|||+..
T Consensus 22 ~l~~~~~~~~la~~~~~~~~i~~~~~~~~~-----~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~ 96 (325)
T d1pgua1 22 HLSYDPTTNAIAYPCGKSAFVRCLDDGDSK-----VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 96 (325)
T ss_dssp CCEEETTTTEEEEEETTEEEEEECCSSCCS-----SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEEeCCCCC-----ccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence 456778888888775443 34455432221 1123456677 46899999998 678999999999999999987
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
++....+.. .....+..|.++|.+++
T Consensus 97 ~~~~~~~~~------------------------------------------------------~~~~~~~~~~~~v~~v~ 122 (325)
T d1pgua1 97 DKESNSVEV------------------------------------------------------NVKSEFQVLAGPISDIS 122 (325)
T ss_dssp EGGGTEEEE------------------------------------------------------EEEEEEECCSSCEEEEE
T ss_pred Ccceeeeec------------------------------------------------------ccccccccccCcEEEEE
Confidence 653322211 11234567899999999
Q ss_pred eeCCC-EEEEEE--CCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe----
Q 005646 362 WSKNN-YLLSAS--IDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV---- 433 (686)
Q Consensus 362 ~s~~~-~L~s~s--~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~---- 433 (686)
|++++ +|++++ .++.+++|+..+++++..+. |...|++++|+|....++++++.|+.|++||+.+.+.....
T Consensus 123 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~ 202 (325)
T d1pgua1 123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH 202 (325)
T ss_dssp ECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS
T ss_pred ECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceeccccc
Confidence 99999 777665 47789999999999998887 99999999999944456889999999999999987765332
Q ss_pred ccCCcEEEEEEccC-CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEe---CCCCCeEEEEeCCC
Q 005646 434 DIRQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL---PQDSSKVMVSCADS 509 (686)
Q Consensus 434 ~~~~~V~~v~~spd-g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fs---p~~~~~l~~~s~D~ 509 (686)
.+...|++++|+|+ +.++++++.||.|++||+.+++.... ...|...+.++.|+ | ++.+|++++.|+
T Consensus 203 ~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~--------l~~~~~~v~~~~~s~~~~-dg~~l~s~s~D~ 273 (325)
T d1pgua1 203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY--------IEDDQEPVQGGIFALSWL-DSQKFATVGADA 273 (325)
T ss_dssp CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE--------CCBTTBCCCSCEEEEEES-SSSEEEEEETTS
T ss_pred CCCCccEEeeeccccceeccccccccceeeeeecccccccc--------ccccccccccceeeeecc-CCCEEEEEeCCC
Confidence 45677999999996 68899999999999999988775432 12233444444444 4 678999999999
Q ss_pred cEEEEeCCcc-----------------eeEcC-CCCEEEEEeCCCcEEEEeC
Q 005646 510 QVRILQGPNV-----------------IGKYK-DGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 510 ~I~iwd~~~~-----------------~~~~~-dg~~l~sgs~Dg~V~iWd~ 543 (686)
.|+|||..+. +++.+ .+.+|++|+.||.|+|||+
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 274 TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred eEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 9999997642 12222 3468999999999999996
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3e-28 Score=251.79 Aligned_cols=321 Identities=13% Similarity=0.190 Sum_probs=218.9
Q ss_pred eeeecccCcc-eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEE
Q 005646 197 ACVVDKQGEG-ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVR 275 (686)
Q Consensus 197 ~~~~~~~~~~-~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 275 (686)
..+..|...+ .+++++++++++|+.|++|+|||+..... .+++.+|.++|++|+|+|+ .+|+||+.|++|+
T Consensus 6 ~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~-------~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~ 77 (355)
T d1nexb2 6 TTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKF-------LLQLSGHDGGVWALKYAHG-GILVSGSTDRTVR 77 (355)
T ss_dssp EEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEE-------EEEEECCSSCEEEEEEETT-TEEEEEETTCCEE
T ss_pred EEECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcE-------EEEEECCCCCEEEEEEcCC-CEEEEEecccccc
Confidence 3445676665 67899999999999999999999865432 3568899999999999985 5899999999999
Q ss_pred EEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEe-CCc-----cccccCCCeEE
Q 005646 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVF-PPK-----VFRILEKPLHE 349 (686)
Q Consensus 276 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~ 349 (686)
+|++...+...................... ....+....++...++.+........... ... ........+..
T Consensus 78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (355)
T d1nexb2 78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKN-IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156 (355)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEEEETT-EEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEE
T ss_pred cccccccccccccccccccccccccccccc-cceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeee
Confidence 999998887666554433322222211111 11111122222222222211110000000 000 00000122334
Q ss_pred eccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC
Q 005646 350 FHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (686)
Q Consensus 350 l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~ 427 (686)
...|...+.... +++ +++++..|+.|++||+.+++.+..+. +...+.++.|+| ++.++++++.|++|++||++++
T Consensus 157 ~~~~~~~v~~~~--~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~ 233 (355)
T d1nexb2 157 LRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENG 233 (355)
T ss_dssp EECCSSCEEEEE--EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTC
T ss_pred eeeccccccccc--cccceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeeecccccceEEeeecccc
Confidence 455666665544 445 89999999999999999999988887 888999999999 9999999999999999999999
Q ss_pred cEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 428 HVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 428 ~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
..+ .+..|...|+++++++ ++|++|+.||.|++||+.+..... .. |...+..+.+.+.++.++ +++
T Consensus 234 ~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~----~~------~~~~~~~~~~~~~~~~~l-~~g 300 (355)
T d1nexb2 234 ELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF----SY------HHTNLSAITTFYVSDNIL-VSG 300 (355)
T ss_dssp CEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE----EE------ECTTCCCCCEEEECSSEE-EEE
T ss_pred cccccccccccccccccccc--ceeeeeecccccccccccccceec----cc------ccCCceEEEEEcCCCCEE-EEE
Confidence 877 5556888999998864 699999999999999998765432 11 224455555444355555 455
Q ss_pred CCCcEEEEeCCcc----------------eeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 507 ADSQVRILQGPNV----------------IGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 507 ~D~~I~iwd~~~~----------------~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
.|+.|++||..+. ++++++ .+|++++.||+++||-+
T Consensus 301 ~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 301 SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 6999999997532 455554 57788899999777654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=9.7e-29 Score=262.89 Aligned_cols=270 Identities=14% Similarity=0.186 Sum_probs=191.2
Q ss_pred cceeeecccCcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-------CCCEEEE
Q 005646 195 SLACVVDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-------DGQYLAS 267 (686)
Q Consensus 195 ~~~~~~~~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-------dg~~Las 267 (686)
...+...|..++.+++..++++++++.|+.|+||+......+... ........|...+..+.+.. ++.++++
T Consensus 6 ~~~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (393)
T d1sq9a_ 6 TANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPK-DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84 (393)
T ss_dssp EEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGG-GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred eeecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCccc-ceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence 344555788899899999999999999999999997654332211 11122334655554443321 3457889
Q ss_pred EeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCe
Q 005646 268 AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPL 347 (686)
Q Consensus 268 gs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (686)
++.||.|++|++........+.... ...
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~~~~~~----------------------------------------------------~~~ 112 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKKVIFEK----------------------------------------------------LDL 112 (393)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEE----------------------------------------------------ECC
T ss_pred EeCCCcEEEEEccCCCceeeeeccc----------------------------------------------------cce
Confidence 9999999999987654221111000 000
Q ss_pred EEeccCCCCeeEEEeeCC-----C-EEEEEECCCcEEEEECCCCe---------------eeeEe----eCCCCeEEEEE
Q 005646 348 HEFHGHSGEILDLSWSKN-----N-YLLSASIDKTVRLWRVGNDH---------------CLRVF----PHSNYVTCVHF 402 (686)
Q Consensus 348 ~~l~~h~~~V~~l~~s~~-----~-~L~s~s~Dg~V~iWd~~~~~---------------~~~~~----~h~~~V~~v~f 402 (686)
.....+...+..++|.++ + ++++++.|++|++|++.... ..... .+...+++++|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 192 (393)
T d1sq9a_ 113 LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 192 (393)
T ss_dssp SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE
T ss_pred eeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEE
Confidence 111235556777777764 2 78999999999999984321 01111 15677999999
Q ss_pred eecCCCEEEEEEcCCcEEEEecCCCcEEE-------EeccCCcEEEEEEccCCCEEEEEecCCc---EEEEeCCCCeeee
Q 005646 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVD-------WVDIRQIVTAVCYRPDGQGGIVGSMMGD---CRFYNVSDNHLEL 472 (686)
Q Consensus 403 sp~~~~~l~sgs~Dg~V~iwd~~~~~~~~-------~~~~~~~V~~v~~spdg~~l~~gs~dg~---i~iwd~~~~~~~~ 472 (686)
+| ++ +|++|+.||+|+|||+.+++.+. +..|..+|++++|+|||++|++|+.|++ |++||+.+++...
T Consensus 193 s~-dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~ 270 (393)
T d1sq9a_ 193 SE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 270 (393)
T ss_dssp CT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred CC-CC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeee
Confidence 99 65 89999999999999999987653 2357889999999999999999999875 9999999877654
Q ss_pred eeeE-----EeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 473 DAEI-----CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 473 ~~~~-----~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.... .......+|...|++++|+| |+++|+||+.|++|+|||+.+++
T Consensus 271 ~l~~~~~~~~~~~~~~gH~~~V~~l~fsp----------------------------d~~~l~S~s~D~~v~vWd~~~g~ 322 (393)
T d1sq9a_ 271 SLSVPTHSSQASLGEFAHSSWVMSLSFND----------------------------SGETLCSAGWDGKLRFWDVKTKE 322 (393)
T ss_dssp EECBC--------CCBSBSSCEEEEEECS----------------------------SSSEEEEEETTSEEEEEETTTTE
T ss_pred eeccccccccceeeeecccCceeeeccCC----------------------------CCCeeEEECCCCEEEEEECCCCC
Confidence 3211 11122356889999999999 89999999999999999998865
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.9e-27 Score=242.04 Aligned_cols=305 Identities=14% Similarity=0.236 Sum_probs=216.1
Q ss_pred ceeeecccCcc-eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcE
Q 005646 196 LACVVDKQGEG-ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVV 274 (686)
Q Consensus 196 ~~~~~~~~~~~-~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I 274 (686)
...+..|...+ .+++++|+++++|+.|+.|+||++..... .+++.+|.+.|++++|+|+ +|++|+.|+++
T Consensus 9 ~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~-------~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~ 79 (342)
T d2ovrb2 9 PKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKC-------LRTLVGHTGGVWSSQMRDN--IIISGSTDRTL 79 (342)
T ss_dssp CEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCE-------EEECCCCSSCEEEEEEETT--EEEEEETTSCE
T ss_pred CEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCE-------EEEEeCCCCCEEEEEeCCC--ccccceecccc
Confidence 33445677666 46899999999999999999999865432 3568899999999999875 99999999999
Q ss_pred EEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC
Q 005646 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (686)
Q Consensus 275 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 354 (686)
++|+........................ . .... ...+..+.+++... .+....+..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~-------------~~~d~~i~~~~~~~----~~~~~~~~~~~ 137 (342)
T d2ovrb2 80 KVWNAETGECIHTLYGHTSTVRCMHLHE---K--RVVS-------------GSRDATLRVWDIET----GQCLHVLMGHV 137 (342)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEET---T--EEEE-------------EETTSEEEEEESSS----CCEEEEEECCS
T ss_pred cccccccccceecccccceeEeeeeccc---c--cccc-------------cccceeEEEeeccc----ccceeeeeccc
Confidence 9999987775554443322111111100 0 0000 01111122221111 11222222232
Q ss_pred CCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EE
Q 005646 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DW 432 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~ 432 (686)
.. ..........+++++.|+.|++||....+++..+. |...+.++.+ ++.+|++|+.||+|++||++.++.+ ..
T Consensus 138 ~~-~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~~~~~~~ 213 (342)
T d2ovrb2 138 AA-VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTL 213 (342)
T ss_dssp SC-EEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred cc-ceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC---CCCEEEEEeCCCeEEEeecccceeeeEe
Confidence 22 22222333489999999999999999999988887 7776666554 6789999999999999999998877 45
Q ss_pred eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
..|...+.+++++ +++|++|+.||.|++||+...+.... ......|...+.++.+++ .++++++.||.|+
T Consensus 214 ~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~ 283 (342)
T d2ovrb2 214 TGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQT-----LQGPNKHQSAVTCLQFNK---NFVITSSDDGTVK 283 (342)
T ss_dssp CCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE-----ECSTTSCSSCEEEEEECS---SEEEEEETTSEEE
T ss_pred cccccceeEEecC--CCEEEEEcCCCEEEEEeccccccccc-----ccccceeeeceeecccCC---CeeEEEcCCCEEE
Confidence 5677778777665 46999999999999999987664321 122345667788887765 6999999999999
Q ss_pred EEeCCc--------------------ceeEcCCCCEEEEEeCCCc----EEEEeCCC
Q 005646 513 ILQGPN--------------------VIGKYKDGKHIVSAGEDSN----VYMWNCIG 545 (686)
Q Consensus 513 iwd~~~--------------------~~~~~~dg~~l~sgs~Dg~----V~iWd~~~ 545 (686)
+||..+ .++++|++.+|++|+.||+ |++||++.
T Consensus 284 iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 284 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 999653 2567889999999999986 99999975
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.9e-28 Score=246.88 Aligned_cols=313 Identities=17% Similarity=0.297 Sum_probs=221.7
Q ss_pred ccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeecccccee
Q 005646 241 YKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (686)
Q Consensus 241 ~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (686)
.....|+||++.|.+ +++++|++|||||.||+|+|||+.+++
T Consensus 7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~------------------------------------- 48 (342)
T d2ovrb2 7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK------------------------------------- 48 (342)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-------------------------------------
T ss_pred CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC-------------------------------------
Confidence 345679999999876 477789999999999999999998765
Q ss_pred EEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEE
Q 005646 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTC 399 (686)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~ 399 (686)
+++++.+|.+.|.+++|+|+ +|++++.|+++++|+........... +...+..
T Consensus 49 -------------------------~~~~~~~h~~~V~~v~~~~~-~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (342)
T d2ovrb2 49 -------------------------CLRTLVGHTGGVWSSQMRDN-IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 102 (342)
T ss_dssp -------------------------EEEECCCCSSCEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred -------------------------EEEEEeCCCCCEEEEEeCCC-ccccceecccccccccccccceecccccceeEee
Confidence 45666789999999999875 99999999999999999888776666 5555555
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEee
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~ 479 (686)
..+ ....++.+..|+.+.+|+..+++............ ..+.+....+++++.|+.|++||+........
T Consensus 103 ~~~---~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~------ 172 (342)
T d2ovrb2 103 MHL---HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV-RCVQYDGRRVVSGAYDFMVKVWDPETETCLHT------ 172 (342)
T ss_dssp EEE---ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCE-EEEEECSSCEEEEETTSCEEEEEGGGTEEEEE------
T ss_pred eec---ccccccccccceeEEEeecccccceeeeecccccc-eeeccccceeeeecCCCeEEEeecccceeeEE------
Confidence 544 45788899999999999999998776555444433 34456677899999999999999987665431
Q ss_pred ccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-------------eeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-------------IGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 480 ~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~-------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
...|...+..+. + ++..+++++.|+.|++||.... .++.+++++|++|+.||.|++||+...
T Consensus 173 --~~~~~~~~~~~~--~-~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~ 247 (342)
T d2ovrb2 173 --LQGHTNRVYSLQ--F-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 247 (342)
T ss_dssp --ECCCSSCEEEEE--E-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred --EcCccccccccc--C-CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccc
Confidence 223444444444 4 5689999999999999997642 234558899999999999999999876
Q ss_pred CCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCC
Q 005646 547 EEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEE 626 (686)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~ 626 (686)
+. ...+..+ ..+.....+++++ +..+++++.|+.+++|+.+
T Consensus 248 ~~--------~~~~~~~---------------------------~~~~~~~~~~~~~----~~~~~s~s~Dg~i~iwd~~ 288 (342)
T d2ovrb2 248 QC--------LQTLQGP---------------------------NKHQSAVTCLQFN----KNFVITSSDDGTVKLWDLK 288 (342)
T ss_dssp CE--------EEEECST---------------------------TSCSSCEEEEEEC----SSEEEEEETTSEEEEEETT
T ss_pred cc--------ccccccc---------------------------ceeeeceeecccC----CCeeEEEcCCCEEEEEECC
Confidence 51 1111110 1111222222222 2356677889999999977
Q ss_pred cCCCccccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCe----EeEEe
Q 005646 627 KLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGR----IRSFL 678 (686)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~----Ir~w~ 678 (686)
+......+.... ...+. ....++ .++++|.+|++|+.||+ |++|.
T Consensus 289 tg~~i~~~~~~~--~~~~~----~~v~~v-~~s~~~~~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 289 TGEFIRNLVTLE--SGGSG----GVVWRI-RASNTKLVCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp TCCEEEEEEECT--TGGGT----CEEEEE-EECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred CCCEEEEEeccc--CCCCC----CCEEEE-EECCCCCEEEEEeCCCCCeeEEEEEe
Confidence 665433321100 00110 011122 34556999999999996 88885
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=1.8e-27 Score=242.03 Aligned_cols=280 Identities=11% Similarity=0.133 Sum_probs=196.1
Q ss_pred ecccCcce--eeecCCCccceeeccceEEEEEcCCccccccccccCcee-cccCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 005646 200 VDKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEI-QAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (686)
Q Consensus 200 ~~~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~I~v 276 (686)
..|...+. +|+++++++++|+.|+.|+||++...... +.+ .+|...|++++|+|+|++ ++++.|+.+++
T Consensus 9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~-------~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~ 80 (299)
T d1nr0a2 9 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN-------RVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKV 80 (299)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-------ECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEE
T ss_pred CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-------EEEcCCCCCcEEEEEeecccee-ecccceeeEEE
Confidence 35666664 55677889999999999999998654321 222 469999999999999974 56678999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
|++.......... ...........+.+.+++...+... .....+++.. +.... .....
T Consensus 81 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~s~~g~~~~~~~----~~~i~~~~~~------~~~~~--~~~~~ 138 (299)
T d1nr0a2 81 VPAGGSGVDSSKA----------VANKLSSQPLGLAVSADGDIAVAAC----YKHIAIYSHG------KLTEV--PISYN 138 (299)
T ss_dssp ECSSSSSSCTTSC----------CEEECSSCEEEEEECTTSSCEEEEE----SSEEEEEETT------EEEEE--ECSSC
T ss_pred eccCCcccccccc----------ccccccccccccccccccccccccc----cccccccccc------ccccc--ccccc
Confidence 9986543111000 0011111222223333322222111 1122222211 11122 23456
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCCCeeee--EeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE---
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLR--VFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--- 430 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~--~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~--- 430 (686)
+.+++|+|++ +|++++.|+.|++||+.+++... ...|...|++++|+| ++++|++++.|+.|++||+.++...
T Consensus 139 ~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~ 217 (299)
T d1nr0a2 139 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHT 217 (299)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 7899999999 99999999999999999887654 345999999999999 9999999999999999999887654
Q ss_pred -EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCC
Q 005646 431 -DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (686)
Q Consensus 431 -~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~ 509 (686)
.+..|...|++++|+|++++|++|+.||.|++||+.+...... ......+...|..+.|.+ +..|++++.|+
T Consensus 218 ~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~v~~~~~~~--~~~l~s~s~D~ 290 (299)
T d1nr0a2 218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI-----IIKGAHAMSSVNSVIWLN--ETTIVSAGQDS 290 (299)
T ss_dssp CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCE-----EETTSSTTSCEEEEEEEE--TTEEEEEETTS
T ss_pred ccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceE-----EEecCCCCCcEEEEEECC--CCEEEEEeCCC
Confidence 3345788999999999999999999999999999987653321 111223445677776654 57899999999
Q ss_pred cEEEEeCC
Q 005646 510 QVRILQGP 517 (686)
Q Consensus 510 ~I~iwd~~ 517 (686)
.|++||+.
T Consensus 291 ~i~iWdl~ 298 (299)
T d1nr0a2 291 NIKFWNVP 298 (299)
T ss_dssp CEEEEECC
T ss_pred EEEEEecc
Confidence 99999974
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.5e-27 Score=244.60 Aligned_cols=239 Identities=15% Similarity=0.142 Sum_probs=187.7
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+.+++|+..|++|+|+|++++||||+.||+|+|||+.++....
T Consensus 5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~------------------------------------- 47 (342)
T d1yfqa_ 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV------------------------------------- 47 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE-------------------------------------
T ss_pred EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce-------------------------------------
Confidence 5578899999999999999999999999999999998754211
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTC 399 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~ 399 (686)
.+....+|.++|.+++|+|++ +|++|+.|++|++|++.......... +......
T Consensus 48 ----------------------~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~ 105 (342)
T d1yfqa_ 48 ----------------------DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGIC 105 (342)
T ss_dssp ----------------------EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEE
T ss_pred ----------------------EEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccc
Confidence 122234699999999999875 89999999999999999887776665 3444455
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCcEEE----Ee---ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeee
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD----WV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~----~~---~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~ 472 (686)
..+.+ +...+++++.|+++++||+++..... .. ........+.+.+++..+++++.||.|++||+.......
T Consensus 106 ~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 184 (342)
T d1yfqa_ 106 RICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184 (342)
T ss_dssp EEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC
T ss_pred ccccc-ccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccc
Confidence 55666 89999999999999999997543221 11 122335567788899999999999999999998765433
Q ss_pred eeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC------------------------------cceeE
Q 005646 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP------------------------------NVIGK 522 (686)
Q Consensus 473 ~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~------------------------------~~~~~ 522 (686)
.... .......+....+.+.++..+++++.|+.+.+|+.. +.++|
T Consensus 185 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 259 (342)
T d1yfqa_ 185 GTIE-----ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259 (342)
T ss_dssp CEEE-----ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEE
T ss_pred eeee-----ecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEe
Confidence 2221 122334577778888788899999999999999742 24789
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 523 YKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 523 ~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+|++++|+||+.||.|+|||+.+++
T Consensus 260 sp~~~~lasg~~Dg~v~vWD~~~~~ 284 (342)
T d1yfqa_ 260 SPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp CTTTCCEEEEETTSCEEEEETTTTE
T ss_pred cCCccEEEEECCCCEEEEEECCCCc
Confidence 9999999999999999999998864
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4.7e-27 Score=243.10 Aligned_cols=242 Identities=14% Similarity=0.143 Sum_probs=187.2
Q ss_pred eeeec--CCCccceeeccceEEEEEcCCcccccc-ccccCceecccCCceEEEEEeeCCCEEEEEeC--CCcEEEEEeec
Q 005646 207 ERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELS-ALYKGQEIQAHDGSILTMKFSPDGQYLASAGD--DGVVRLWQVVE 281 (686)
Q Consensus 207 ~~~s~--~~~~l~~g~~d~~v~vw~~~~~~~~~~-~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~--Dg~I~vWd~~~ 281 (686)
.+|++ ++.++++|+.||+|+||++........ .......+..|.++|.+++|+++|++|++++. ++.+++|++.+
T Consensus 69 v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~ 148 (325)
T d1pgua1 69 VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS 148 (325)
T ss_dssp EEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT
T ss_pred EEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecc
Confidence 45554 446889999999999999865332111 11222356789999999999999999988765 67899999877
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
++ .+..+.+|...|.+++
T Consensus 149 ~~--------------------------------------------------------------~~~~~~~h~~~v~~~~ 166 (325)
T d1pgua1 149 GN--------------------------------------------------------------SLGEVSGHSQRINACH 166 (325)
T ss_dssp CC--------------------------------------------------------------EEEECCSCSSCEEEEE
T ss_pred cc--------------------------------------------------------------cceeeeeccccccccc
Confidence 65 3455668999999999
Q ss_pred eeCCC--EEEEEECCCcEEEEECCCCeeeeEee----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe-c
Q 005646 362 WSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-D 434 (686)
Q Consensus 362 ~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~ 434 (686)
|+|++ ++++++.|+.|++||+...+....+. |...|++++|+|..+.+|++|+.||.|++||+++++.+..+ .
T Consensus 167 ~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 246 (325)
T d1pgua1 167 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED 246 (325)
T ss_dssp ECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB
T ss_pred ccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccc
Confidence 99988 68899999999999999887766653 77889999999955789999999999999999999887544 4
Q ss_pred cCCcEEEEEEc---cCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 435 IRQIVTAVCYR---PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 435 ~~~~V~~v~~s---pdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
|...+..+.|+ |+|++|++++.|+.|+|||+.++++..... . ..+...+..+.+.+.....|++++.|+.|
T Consensus 247 ~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~l~s~s~dg~i 320 (325)
T d1pgua1 247 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT--L----DKQQLGNQQVGVVATGNGRIISLSLDGTL 320 (325)
T ss_dssp TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE--C----CTTCGGGCEEEEEEEETTEEEEEETTSCE
T ss_pred cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEE--e----cCCcccCeEEEEEECCCCEEEEEECCCEE
Confidence 56666555555 689999999999999999999887654221 1 12223344555554345689999999999
Q ss_pred EEEeC
Q 005646 512 RILQG 516 (686)
Q Consensus 512 ~iwd~ 516 (686)
++||+
T Consensus 321 ~vwdl 325 (325)
T d1pgua1 321 NFYEL 325 (325)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99985
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6e-26 Score=227.59 Aligned_cols=261 Identities=17% Similarity=0.341 Sum_probs=196.9
Q ss_pred ccceeeecccCcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCc
Q 005646 194 RSLACVVDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGV 273 (686)
Q Consensus 194 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 273 (686)
..+.|...+...+.+++++++++++|+.|+.|+|||+..... .+++.+|.+.|++|+| ++++|+||+.|+.
T Consensus 6 ~~i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~-------~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~ 76 (293)
T d1p22a2 6 QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC-------KRILTGHTGSVLCLQY--DERVIITGSSDST 76 (293)
T ss_dssp CCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCE-------EEEECCCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred EEEeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcE-------EEEEecCCCCEeeeec--ccceeeccccccc
Confidence 345565566777888999999999999999999999865432 3568899999999887 6789999999999
Q ss_pred EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccC
Q 005646 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (686)
Q Consensus 274 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 353 (686)
|++|++..+....... .+
T Consensus 77 i~~~~~~~~~~~~~~~--------------------------------------------------------------~~ 94 (293)
T d1p22a2 77 VRVWDVNTGEMLNTLI--------------------------------------------------------------HH 94 (293)
T ss_dssp EEEEESSSCCEEEEEC--------------------------------------------------------------CC
T ss_pred cccccccccccccccc--------------------------------------------------------------cc
Confidence 9999998776332221 11
Q ss_pred CCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeee---Eee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE
Q 005646 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLR---VFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 354 ~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~---~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
... ........+.++++..++.+++|+........ .+. |...|.++.+.+ ..+++++.|+.|++||+++++.
T Consensus 95 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~ 170 (293)
T d1p22a2 95 CEA-VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEF 170 (293)
T ss_dssp CSC-EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCE
T ss_pred ccc-cccccccccceeecccccceeEeeccccccccccccccccccccccceecc---cccccccCCCceeeecCCCCcE
Confidence 111 12222333489999999999999998765433 222 888888888754 6889999999999999999987
Q ss_pred E-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 430 V-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 430 ~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
+ .+..+...+..+.++ +.++++++.||.|++||+.+...... ...+...+.. +.+ +...|++++.|
T Consensus 171 ~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~v~~--~~~-~~~~l~sg~~d 237 (293)
T d1p22a2 171 VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRV--------LEGHEELVRC--IRF-DNKRIVSGAYD 237 (293)
T ss_dssp EEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE--------ECCCSSCEEE--EEC-CSSEEEEEETT
T ss_pred EEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeee--------ecccceeeee--ccc-cceEEEEEcCC
Confidence 6 455567777777664 56899999999999999988765432 2234455554 444 56899999999
Q ss_pred CcEEEEeCCc----------------------ceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 509 SQVRILQGPN----------------------VIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 509 ~~I~iwd~~~----------------------~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
+.|++||... ..++..++++|+|||.||+|+|||
T Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred CEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence 9999998421 112333789999999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=9.8e-26 Score=227.78 Aligned_cols=251 Identities=14% Similarity=0.181 Sum_probs=198.6
Q ss_pred eeecccCcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 005646 198 CVVDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (686)
Q Consensus 198 ~~~~~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW 277 (686)
....|...+.++..++ |++|+.||+|++|+... ..++|...|.+++|++++ .+++++.|++|++|
T Consensus 8 ~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~------------~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w 72 (287)
T d1pgua2 8 TISGHNKGITALTVNP--LISGSYDGRIMEWSSSS------------MHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN 72 (287)
T ss_dssp EECCCSSCEEEEETTT--TEEEETTSCEEETTTTE------------EECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred EECCCCCceEEEEECc--EEEEeCCCeEEEEECCC------------CCCCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence 3446777888887765 99999999999997543 234699999999998765 57899999999999
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCe
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 357 (686)
++...+ +...+
T Consensus 73 ~~~~~~---------------------------------------------------------------------~~~~~ 83 (287)
T d1pgua2 73 GITKHE---------------------------------------------------------------------FGSQP 83 (287)
T ss_dssp TEEEEE---------------------------------------------------------------------CSSCE
T ss_pred cccccc---------------------------------------------------------------------cccce
Confidence 875432 22356
Q ss_pred eEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCC-cEEEEecCCCcEEEEe--c
Q 005646 358 LDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG-KVRIWAVLSCHVVDWV--D 434 (686)
Q Consensus 358 ~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg-~V~iwd~~~~~~~~~~--~ 434 (686)
..+++++++.++..+.++.+.+|+..+++.+..+.+...+. +++| +++.+++++.|+ .|++|++......... .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~ 160 (287)
T d1pgua2 84 KVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS--AVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP 160 (287)
T ss_dssp EEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE--EEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSSC
T ss_pred eeeeeccCCceEEEeecccceeeeccceeeeeeccccceee--eeec-cCcceeeeccccceeeeeeccccceeeeeeec
Confidence 67888888866666778889999999999999888766654 4566 778888888775 6999999876654332 4
Q ss_pred cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC---------CCCeEEEE
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ---------DSSKVMVS 505 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~---------~~~~l~~~ 505 (686)
+...+++++|+|+|++|++|+.||.|++||+.++.... .....|..+|++++|+|. +..+++++
T Consensus 161 ~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~-------~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sg 233 (287)
T d1pgua2 161 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT-------SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 233 (287)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-------CCSCCCSSCEEEEEECCCC------CCSCCEEEEE
T ss_pred cCCceeEEEeccCccccccccccccccceeeccccccc-------ccccccccccceeeecccccccccccCCCCeeEee
Confidence 67789999999999999999999999999998876432 224567889999999983 35689999
Q ss_pred eCCCcEEEEeCCc----------------ceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 506 CADSQVRILQGPN----------------VIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 506 s~D~~I~iwd~~~----------------~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
+.|+.|++||..+ .++|++++ .|+|++.|+.|++|++
T Consensus 234 s~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 234 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred cCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 9999999999642 35677775 6899999999999986
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.9e-25 Score=223.83 Aligned_cols=268 Identities=19% Similarity=0.259 Sum_probs=199.2
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+....|...|+|++ +||++||||+.||+|+|||+.+++
T Consensus 9 ~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~---------------------------------------- 46 (293)
T d1p22a2 9 HCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLE---------------------------------------- 46 (293)
T ss_dssp ECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCC----------------------------------------
T ss_pred eccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCc----------------------------------------
Confidence 33556888999875 479999999999999999998765
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEe
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fs 403 (686)
++..+.+|.+.|++++|++ .+|++|+.|++|++|++..+.............. .+.
T Consensus 47 ----------------------~~~~l~~H~~~V~~v~~~~-~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~-~~~ 102 (293)
T d1p22a2 47 ----------------------CKRILTGHTGSVLCLQYDE-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL-HLR 102 (293)
T ss_dssp ----------------------EEEEECCCSSCEEEEECCS-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE-EEE
T ss_pred ----------------------EEEEEecCCCCEeeeeccc-ceeecccccccccccccccccccccccccccccc-ccc
Confidence 4566778999999998842 3999999999999999999988777764443333 334
Q ss_pred ecCCCEEEEEEcCCcEEEEecCCCcEE----EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEee
Q 005646 404 PVDDNYFISGSIDGKVRIWAVLSCHVV----DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (686)
Q Consensus 404 p~~~~~l~sgs~Dg~V~iwd~~~~~~~----~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~ 479 (686)
+ ....++++..++.+++||..+.... ....+...+..+.+.+ ..+++++.|+.|++||+.+.+....
T Consensus 103 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~------ 173 (293)
T d1p22a2 103 F-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRT------ 173 (293)
T ss_dssp C-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEE------
T ss_pred c-cccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCcEEEE------
Confidence 4 6788999999999999999876532 3445677787776654 5788999999999999998775432
Q ss_pred ccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-------------eeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-------------IGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 480 ~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~-------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
...+...+..+.+.+ ..+++++.|+.|++||..+. ..+.+++.+|++|+.||.|+|||+...
T Consensus 174 --~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 174 --LNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAA 248 (293)
T ss_dssp --EECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred --EcccccccccccCCC---CeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCC
Confidence 223445677777765 68999999999999997642 345569999999999999999998765
Q ss_pred CCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCC
Q 005646 547 EEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWP 624 (686)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~ 624 (686)
...... .....+..+.+|...+.+++.| +..+++++.|+++++|+
T Consensus 249 ~~~~~~-----------------------------~~~~~~~~~~~H~~~V~~v~~d----~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 249 LDPRAP-----------------------------AGTLCLRTLVEHSGRVFRLQFD----EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TSTTSC-----------------------------TTTTEEEEECCCSSCCCCEEEC----SSCEEECCSSSEEEEEC
T ss_pred cccccc-----------------------------CCceeeEEecCCCCCEEEEEEc----CCEEEEEecCCEEEEeC
Confidence 421110 0112233344444444444444 34677889999999996
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=7.8e-25 Score=227.51 Aligned_cols=268 Identities=8% Similarity=0.030 Sum_probs=205.9
Q ss_pred eeeec-CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCC--cEEEEEeecCe
Q 005646 207 ERVRL-NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG--VVRLWQVVEDE 283 (686)
Q Consensus 207 ~~~s~-~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--~I~vWd~~~~~ 283 (686)
..|+| +|+++++++ .+.|+||+...... . . .+|...|.+++|+|||++|++++.+. .|++||+.+++
T Consensus 8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~--~------~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~ 77 (360)
T d1k32a3 8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYV--L------K-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK 77 (360)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBE--E------E-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred ccccCCCCCEEEEEE-CCeEEEEECCCCcE--E------E-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc
Confidence 57998 888888775 57999998754322 1 1 26999999999999999999877653 79999997754
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
+..+..|...|.+++|+
T Consensus 78 ---------------------------------------------------------------~~~~~~~~~~v~~~~~s 94 (360)
T d1k32a3 78 ---------------------------------------------------------------AEKFEENLGNVFAMGVD 94 (360)
T ss_dssp ---------------------------------------------------------------EEECCCCCCSEEEEEEC
T ss_pred ---------------------------------------------------------------EEEeeCCCceEEeeeec
Confidence 33455799999999999
Q ss_pred CCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEE----------cCCcEEEEecCCCcEEE
Q 005646 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS----------IDGKVRIWAVLSCHVVD 431 (686)
Q Consensus 364 ~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs----------~Dg~V~iwd~~~~~~~~ 431 (686)
|++ +|++++.++.+++|++.++++...+. |...+.+++|+| ++++|+.+. .++.+++||+.+++...
T Consensus 95 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~ 173 (360)
T d1k32a3 95 RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA 173 (360)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred ccccccceeccccccccccccccceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceee
Confidence 999 99999999999999999999988887 888999999999 999998654 34569999999999888
Q ss_pred EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeee-----EEeecc-------------------------
Q 005646 432 WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE-----ICVHSK------------------------- 481 (686)
Q Consensus 432 ~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~-----~~~~~~------------------------- 481 (686)
...+...+..++|+|||++|++++.++.+++||........... +..+..
T Consensus 174 ~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 253 (360)
T d1k32a3 174 ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY 253 (360)
T ss_dssp CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGG
T ss_pred ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccc
Confidence 88888899999999999999999999999999976543321100 000000
Q ss_pred -----ccCCCCCeEEEEEeCC---------C---CCeEEEEeCCCcEEEEeCCc-----------ceeEcCCCCEEEEEe
Q 005646 482 -----KKAPCKRITGFQFLPQ---------D---SSKVMVSCADSQVRILQGPN-----------VIGKYKDGKHIVSAG 533 (686)
Q Consensus 482 -----~~~~~~~I~~l~fsp~---------~---~~~l~~~s~D~~I~iwd~~~-----------~~~~~~dg~~l~sgs 533 (686)
..........+...++ . ..+++.++.++.|++||..+ .++|+|||++|++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~~~SpDG~~l~~~~ 333 (360)
T d1k32a3 254 KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRK 333 (360)
T ss_dssp GGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEEE
T ss_pred cceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecCCcCEEEECCCCCEEEEEE
Confidence 0001112233333331 0 11234455678999999653 378999999999999
Q ss_pred CCCcEEEEeCCCCCC
Q 005646 534 EDSNVYMWNCIGHEE 548 (686)
Q Consensus 534 ~Dg~V~iWd~~~~~~ 548 (686)
.||.|++||++.++.
T Consensus 334 ~Dg~i~v~d~~~~~~ 348 (360)
T d1k32a3 334 DDGKIYTFPLEKPED 348 (360)
T ss_dssp TTSCEEEEESSCTTS
T ss_pred CCCeEEEEECCCCCc
Confidence 999999999998873
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=5e-25 Score=222.47 Aligned_cols=279 Identities=14% Similarity=0.111 Sum_probs=193.2
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.++|+||.++|++|+|+| |+||+.||+|++||+.++.
T Consensus 6 i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~--------------------------------------- 42 (287)
T d1pgua2 6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH--------------------------------------- 42 (287)
T ss_dssp EEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE---------------------------------------
T ss_pred eEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC---------------------------------------
Confidence 357899999999999987 9999999999999975532
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHF 402 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~f 402 (686)
.+|...|.++++++++.+++++.|++|++|++... .....+.++++
T Consensus 43 ----------------------------~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~------~~~~~~~~~~~ 88 (287)
T d1pgua2 43 ----------------------------QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH------EFGSQPKVASA 88 (287)
T ss_dssp ----------------------------CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE------ECSSCEEEEEE
T ss_pred ----------------------------CCCCCCEEEEEecCCCeEEEEeecccccccccccc------ccccceeeeee
Confidence 35889999999998889999999999999997542 24556788888
Q ss_pred eecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCC-cEEEEeCCCCeeeeeeeEEeecc
Q 005646 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG-DCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 403 sp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg-~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
++ ++..+++ +.++.+.+|+..+++.+........+ .+++|++..+++++.++ .+++|++....... ..
T Consensus 89 ~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~-------~~ 157 (287)
T d1pgua2 89 NN-DGFTAVL-TNDDDLLILQSFTGDIIKSVRLNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-------DL 157 (287)
T ss_dssp CS-SSEEEEE-ETTSEEEEEETTTCCEEEEEECSSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEE-------EC
T ss_pred cc-CCceEEE-eecccceeeeccceeeeeecccccee--eeeeccCcceeeeccccceeeeeeccccceee-------ee
Confidence 87 6555554 55778999999999988777766655 45677888888888875 69999987544322 12
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccc
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLE 561 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~ 561 (686)
...+...+++++|+| ++++|++|+.||.|++||+.++... ...+.
T Consensus 158 ~~~~~~~v~~~~~s~----------------------------~~~~l~~g~~dg~i~i~d~~~~~~~-------~~~~~ 202 (287)
T d1pgua2 158 KTPLRAKPSYISISP----------------------------SETYIAAGDVMGKILLYDLQSREVK-------TSRWA 202 (287)
T ss_dssp SSCCSSCEEEEEECT----------------------------TSSEEEEEETTSCEEEEETTTTEEE-------ECCSC
T ss_pred eeccCCceeEEEecc----------------------------Cccccccccccccccceeecccccc-------ccccc
Confidence 334567799999999 8999999999999999999876511 01111
Q ss_pred cccC-CcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCcCCCcccccccccc
Q 005646 562 RFTT-NASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASAL 640 (686)
Q Consensus 562 ~~~~-~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~ 640 (686)
.+.. ...+++++.+. ....+.++ ...+++++.|+++++|+.++.......
T Consensus 203 ~h~~~v~~~~~~p~~~-------------------~~~~~~~~----~~~l~sgs~D~~i~iw~~~~~~~~~~~------ 253 (287)
T d1pgua2 203 FRTSKINAISWKPAEK-------------------GANEEEIE----EDLVATGSLDTNIFIYSVKRPMKIIKA------ 253 (287)
T ss_dssp CCSSCEEEEEECCCC-------------------------CCS----CCEEEEEETTSCEEEEESSCTTCCEEE------
T ss_pred ccccccceeeeccccc-------------------ccccccCC----CCeeEeecCCCeEEEEECCCCCeEEEE------
Confidence 1111 22333332221 11122333 455667889999999996553321111
Q ss_pred chhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 641 HKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
...|.. ...++. .++++ .|+|||.||+||+|..
T Consensus 254 ~~~h~~----~V~~v~-~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 254 LNAHKD----GVNNLL-WETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp TTSSTT----CEEEEE-EEETT-EEEEEETTSCEEEEEE
T ss_pred eCCCCC----CeEEEE-ECCCC-EEEEEECCCeEEEEEE
Confidence 111111 112222 23334 5899999999999974
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=5.2e-25 Score=233.74 Aligned_cols=275 Identities=11% Similarity=0.101 Sum_probs=190.6
Q ss_pred CccceeeccceEEEEEcCCcccccccc---ccCceecccCCceEEEEEeeC-----CCEEEEEeCCCcEEEEEeecCeee
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSAL---YKGQEIQAHDGSILTMKFSPD-----GQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~---~~~~~l~~H~~~I~~l~fspd-----g~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
..+++++.|+.|++|++.......... ........|...++.++|.++ +.++++++.||+|++|++......
T Consensus 80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~ 159 (393)
T d1sq9a_ 80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 159 (393)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence 356789999999999875433211111 111122346678899999875 468999999999999998754311
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
......... ....+. ........+...+.+++|+|+
T Consensus 160 ~~~~~~~~~----------------------~~~~~~----------------------~~~~~~~~~~~~~~~v~~s~d 195 (393)
T d1sq9a_ 160 SNSLTLNWS----------------------PTLELQ----------------------GTVESPMTPSQFATSVDISER 195 (393)
T ss_dssp HHHTTTCCC----------------------CEEEEE----------------------EEECCSSSSCCCCCEEEECTT
T ss_pred cceeeeeec----------------------cceecc----------------------cceecccCCCCcEEEEEECCC
Confidence 110000000 000000 011222346677899999999
Q ss_pred CEEEEEECCCcEEEEECCCCeeeeEee-------CCCCeEEEEEeecCCCEEEEEEcCCc---EEEEecCCCcEEEEe--
Q 005646 366 NYLLSASIDKTVRLWRVGNDHCLRVFP-------HSNYVTCVHFNPVDDNYFISGSIDGK---VRIWAVLSCHVVDWV-- 433 (686)
Q Consensus 366 ~~L~s~s~Dg~V~iWd~~~~~~~~~~~-------h~~~V~~v~fsp~~~~~l~sgs~Dg~---V~iwd~~~~~~~~~~-- 433 (686)
++|++|+.|++|+|||+.+++++..+. |..+|++++|+| ++++|++|+.|++ |++||+.+++.+...
T Consensus 196 g~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~ 274 (393)
T d1sq9a_ 196 GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSV 274 (393)
T ss_dssp SEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECB
T ss_pred CEEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc-ccceeeeecCCCCcceeeecccccceeeeeecc
Confidence 999999999999999999998877653 889999999999 9999999999974 999999998766433
Q ss_pred ------------ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCe----EEEEEeCC
Q 005646 434 ------------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI----TGFQFLPQ 497 (686)
Q Consensus 434 ------------~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I----~~l~fsp~ 497 (686)
+|...|++++|+|||++|++|+.|++|+|||+.++++.... .+|...| ..+.|.|
T Consensus 275 ~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l--------~gH~~~v~~~~~~~~~~~- 345 (393)
T d1sq9a_ 275 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL--------NMHCDDIEIEEDILAVDE- 345 (393)
T ss_dssp C--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE--------ECCGGGCSSGGGCCCBCT-
T ss_pred ccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEE--------CCcCCcccCCccEEEECC-
Confidence 58889999999999999999999999999999998765421 2343334 3577888
Q ss_pred CCCeEEEEeCCCcEEEEeCC-cceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 498 DSSKVMVSCADSQVRILQGP-NVIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 498 ~~~~l~~~s~D~~I~iwd~~-~~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
++..+++++. -.++.|.-. .........+.|++++.|+.|++|.-
T Consensus 346 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 346 HGDSLAEPGV-FDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 391 (393)
T ss_dssp TSCBCSSCCE-EEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred CCCEEEEccc-ceEEECccCceeccccCCCCEEEEEEcCCeEEEEeC
Confidence 5555543321 112222211 11112224567999999999999963
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.5e-24 Score=221.95 Aligned_cols=278 Identities=10% Similarity=0.073 Sum_probs=199.8
Q ss_pred ccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEE
Q 005646 202 KQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 202 ~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd 278 (686)
|+..+ .+|++++++|++|+.|++|+||++........ .....+|.++|++++|+|+ +.+|++|+.||+|++|+
T Consensus 10 h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~----~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~ 85 (342)
T d1yfqa_ 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD----LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE----EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred CCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceE----EEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence 44444 56778889999999999999999865433211 1223469999999999996 55899999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.......... ..+.....
T Consensus 86 ~~~~~~~~~~~-------------------------------------------------------------~~~~~~~~ 104 (342)
T d1yfqa_ 86 LIGSPSFQALT-------------------------------------------------------------NNEANLGI 104 (342)
T ss_dssp SSSSSSEEECB-------------------------------------------------------------SCCCCSCE
T ss_pred ccccccccccc-------------------------------------------------------------cccccccc
Confidence 87765322111 11222333
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEe----e---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF----P---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~----~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
...+.++. .+++++.|+++++||++........ . .......+.+.+ .++.+++++.|+.|++||++.....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~ 183 (342)
T d1yfqa_ 105 CRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT-NSSRLIVGMNNSQVQWFRLPLCEDD 183 (342)
T ss_dssp EEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE-CSSEEEEEESTTEEEEEESSCCTTC
T ss_pred ccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec-cCCceeeecCCCcEEEEecccCccc
Confidence 44444555 9999999999999998754332222 1 234456677777 8899999999999999999876532
Q ss_pred ----EEeccCCcEEEEEEc-cCCCEEEEEecCCcEEEEeCCCCeeeee----eeEE---eeccccCCCCCeEEEEEeCCC
Q 005646 431 ----DWVDIRQIVTAVCYR-PDGQGGIVGSMMGDCRFYNVSDNHLELD----AEIC---VHSKKKAPCKRITGFQFLPQD 498 (686)
Q Consensus 431 ----~~~~~~~~V~~v~~s-pdg~~l~~gs~dg~i~iwd~~~~~~~~~----~~~~---~~~~~~~~~~~I~~l~fsp~~ 498 (686)
........+.+..+. +++..+++++.||.+.+|++........ .... .......|...|++++|+| +
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~ 262 (342)
T d1yfqa_ 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-R 262 (342)
T ss_dssp CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-T
T ss_pred ceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecC-C
Confidence 233344555565554 4778999999999999999865432211 0111 1122345677899999999 7
Q ss_pred CCeEEEEeCCCcEEEEeCCc--------------ceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 499 SSKVMVSCADSQVRILQGPN--------------VIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 499 ~~~l~~~s~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
+.+|++++.||.|++||..+ .+++++++++|++|+.|+.+++|.....
T Consensus 263 ~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~~ 324 (342)
T d1yfqa_ 263 HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQ 324 (342)
T ss_dssp TCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSSCT
T ss_pred ccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEeeeeCC
Confidence 88999999999999999653 3667889999999999999999987553
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.91 E-value=9.8e-24 Score=219.06 Aligned_cols=185 Identities=10% Similarity=0.040 Sum_probs=143.8
Q ss_pred EEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEE
Q 005646 255 TMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACV 333 (686)
Q Consensus 255 ~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (686)
...||| ||+++|+++. |.|++||+.++..
T Consensus 7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~------------------------------------------------- 36 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYV------------------------------------------------- 36 (360)
T ss_dssp EEEEEECGGGCEEEEET-TEEEEECTTSSBE-------------------------------------------------
T ss_pred cccccCCCCCEEEEEEC-CeEEEEECCCCcE-------------------------------------------------
Confidence 467999 9999999875 7999999876542
Q ss_pred EeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCC--cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEE
Q 005646 334 VFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDK--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF 410 (686)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg--~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l 410 (686)
..+ +|...|.+++|+|+| +|++++.+. .|++||+.+++..+...|...|.+++|+| ++++|
T Consensus 37 --------------~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l 100 (360)
T d1k32a3 37 --------------LKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR-NGKFA 100 (360)
T ss_dssp --------------EEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECT-TSSEE
T ss_pred --------------EEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecc-ccccc
Confidence 112 588899999999999 777666553 79999999998887777999999999999 99999
Q ss_pred EEEEcCCcEEEEecCCCcEEEE-eccCCcEEEEEEccCCCEEEEEe----------cCCcEEEEeCCCCeeeeeeeEEee
Q 005646 411 ISGSIDGKVRIWAVLSCHVVDW-VDIRQIVTAVCYRPDGQGGIVGS----------MMGDCRFYNVSDNHLELDAEICVH 479 (686)
Q Consensus 411 ~sgs~Dg~V~iwd~~~~~~~~~-~~~~~~V~~v~~spdg~~l~~gs----------~dg~i~iwd~~~~~~~~~~~~~~~ 479 (686)
++++.++.+++|++.+++.... ..+...+.+++|+|||++|+.+. .++.+++||+.+++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~------- 173 (360)
T d1k32a3 101 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA------- 173 (360)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-------
T ss_pred ceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceee-------
Confidence 9999999999999999987744 45667889999999999998654 34569999998876432
Q ss_pred ccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 480 ~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
...+...+..+.|+| +++.|++++.++.+++|+
T Consensus 174 --~~~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~~d 206 (360)
T d1k32a3 174 --ATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPD 206 (360)
T ss_dssp --CSCSSSBEEEEEECT-TSCEEEEEESCCCCCEEC
T ss_pred --ecccccccccccccC-CCCEEEEEeCCCceEccc
Confidence 223446688899999 333333333333333333
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.87 E-value=1.1e-19 Score=183.03 Aligned_cols=249 Identities=13% Similarity=0.159 Sum_probs=191.7
Q ss_pred ceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEE-EEeCCCcEEEEEeecCeeeeeeccCCCCC
Q 005646 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLA-SAGDDGVVRLWQVVEDERLTEVDIPEIDP 295 (686)
Q Consensus 217 ~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~ 295 (686)
++++.+++|.|||..+... .+++.. ...+..++|+|||++|+ +++.++.|++||+.+++.+..
T Consensus 6 V~~~~~~~v~v~D~~t~~~-------~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-------- 69 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKV-------TATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-------- 69 (301)
T ss_dssp EEETTTTEEEEEETTTTEE-------EEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE--------
T ss_pred EEECCCCEEEEEECCCCeE-------EEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee--------
Confidence 5677899999999876532 122332 24578999999999875 667889999999988874433
Q ss_pred cceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEEC
Q 005646 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASI 373 (686)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~ 373 (686)
+..|. .+..++|++++ .++++..
T Consensus 70 ------------------------------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~ 94 (301)
T d1l0qa2 70 ------------------------------------------------------VPAGS-SPQGVAVSPDGKQVYVTNMA 94 (301)
T ss_dssp ------------------------------------------------------EECSS-SEEEEEECTTSSEEEEEETT
T ss_pred ------------------------------------------------------eeccc-cccccccccccccccccccc
Confidence 23333 45789999998 5556677
Q ss_pred CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEE-EEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEE
Q 005646 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF-ISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI 452 (686)
Q Consensus 374 Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~ 452 (686)
++.+.+|+..+++....+.+...+.++.|+| ++..+ +++..++.+.+|+..+...+........+..++++|+++.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
T d1l0qa2 95 SSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVY 173 (301)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEE
T ss_pred cceeeecccccceeeeeccccccceEEEeec-CCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeecccccee
Confidence 8899999999999999999888899999999 77765 455668889999999999998888888899999999999988
Q ss_pred EEecC-CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe---CCCcEEEEeCCc----------
Q 005646 453 VGSMM-GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC---ADSQVRILQGPN---------- 518 (686)
Q Consensus 453 ~gs~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s---~D~~I~iwd~~~---------- 518 (686)
+++.+ +.+.+|+.......... .....+.++.|++ ++..++++. .++.|++||..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~ 243 (301)
T d1l0qa2 174 VANFDSMSISVIDTVTNSVIDTV---------KVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEE---------ECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC
T ss_pred eecccccccccccccceeeeecc---------cccCCcceeeccc-cccccccccccceeeeeeeeecCCCeEEEEEcCC
Confidence 87765 56777777666543211 1124478899999 566655544 346899999653
Q ss_pred ----ceeEcCCCCEE-EEEeCCCcEEEEeCCCCC
Q 005646 519 ----VIGKYKDGKHI-VSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 ----~~~~~~dg~~l-~sgs~Dg~V~iWd~~~~~ 547 (686)
.++++|||++| ++++.|+.|+|||+.+++
T Consensus 244 ~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~ 277 (301)
T d1l0qa2 244 PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277 (301)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence 37899999987 577789999999999876
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=1.7e-20 Score=201.29 Aligned_cols=261 Identities=10% Similarity=0.019 Sum_probs=187.5
Q ss_pred cceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCC
Q 005646 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDP 295 (686)
Q Consensus 216 l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~ 295 (686)
+++.+.+++|.|||...... ...+..|. .+..++|||||++|++++.|++|++||+.+++.....
T Consensus 35 ~v~~~d~g~v~v~D~~t~~v-------~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~------- 99 (432)
T d1qksa2 35 SVTLRDAGQIALIDGSTYEI-------KTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA------- 99 (432)
T ss_dssp EEEETTTTEEEEEETTTCCE-------EEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE-------
T ss_pred EEEEcCCCEEEEEECCCCcE-------EEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEE-------
Confidence 47889999999999765432 24455564 6999999999999999999999999999876532111
Q ss_pred cceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-E-EEEEEC
Q 005646 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-Y-LLSASI 373 (686)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~-L~s~s~ 373 (686)
.+....+|.+.+.+..|+||| + +++++.
T Consensus 100 --------------------------------------------------~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~ 129 (432)
T d1qksa2 100 --------------------------------------------------EIKIGSEARSIETSKMEGWEDKYAIAGAYW 129 (432)
T ss_dssp --------------------------------------------------EEECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred --------------------------------------------------EEecCCCCCCeEEecccCCCCCEEEEEcCC
Confidence 111223466677777889999 5 478888
Q ss_pred CCcEEEEECCCCeeeeEee------------CCCCeEEEEEeecCCCEE-EEEEcCCcEEEEecCCCcEE--EEeccCCc
Q 005646 374 DKTVRLWRVGNDHCLRVFP------------HSNYVTCVHFNPVDDNYF-ISGSIDGKVRIWAVLSCHVV--DWVDIRQI 438 (686)
Q Consensus 374 Dg~V~iWd~~~~~~~~~~~------------h~~~V~~v~fsp~~~~~l-~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~ 438 (686)
+++|+|||..+++++..+. +......+.++| ++..+ ++...++.|.+||..+.+.. ..+.+...
T Consensus 130 ~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~ 208 (432)
T d1qksa2 130 PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF 208 (432)
T ss_dssp TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSS
T ss_pred CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC-CCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCc
Confidence 9999999999999887653 445677889999 66655 56667899999999887654 44456678
Q ss_pred EEEEEEccCCCEEEEEec-CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE-eCCCcEEEEeC
Q 005646 439 VTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CADSQVRILQG 516 (686)
Q Consensus 439 V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~-s~D~~I~iwd~ 516 (686)
+..++|+|||+++++++. ++.+.++|..+.+...... ......+......+.+.. .+...... ..++.|.+|+.
T Consensus 209 ~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~-~g~~~~~~~lg~~~v~~~~~ 284 (432)
T d1qksa2 209 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED---TGGQTPHPGRGANFVHPT-FGPVWATSHMGDDSVALIGT 284 (432)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE---CSSSSBCCTTCEEEEETT-TEEEEEEEBSSSSEEEEEEC
T ss_pred cccceECCCCCEEEEeccccceEEEeecccceEEEEec---cCccccccCcccceecCC-CCceecccccCCceEEeccc
Confidence 899999999998877765 5579999998877654222 112223344444454443 33333333 24788888875
Q ss_pred Cc-----------ceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 517 PN-----------VIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 517 ~~-----------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.. ...+.+++..+++++.|..+++|.....
T Consensus 285 ~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~ 325 (432)
T d1qksa2 285 DPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL 325 (432)
T ss_dssp CTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT
T ss_pred ccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccC
Confidence 43 2456778888999999999999986654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.85 E-value=3.2e-20 Score=198.71 Aligned_cols=266 Identities=11% Similarity=0.058 Sum_probs=185.1
Q ss_pred ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCC
Q 005646 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~ 294 (686)
.+++.+.+++|+|||..+... ..++..|. .+..++|||||++|++++.|++|++||+.+++......
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~-------~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~----- 100 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKI-------VKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE----- 100 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSE-------EEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE-----
T ss_pred EEEEEcCCCEEEEEECCCCcE-------EEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEE-----
Confidence 457788899999999876432 24566664 58999999999999999999999999998876332211
Q ss_pred CcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EE-EEEE
Q 005646 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSAS 372 (686)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L-~s~s 372 (686)
+....+|...+.+++|+|+| +| +++.
T Consensus 101 ----------------------------------------------------i~~~~~~~~~~~s~~~spDG~~l~v~~~ 128 (426)
T d1hzua2 101 ----------------------------------------------------IKIGIEARSVESSKFKGYEDRYTIAGAY 128 (426)
T ss_dssp ----------------------------------------------------EECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred ----------------------------------------------------EeCCCCCcceEEeeeecCCCCEEEEeec
Confidence 12223566777888899999 55 5666
Q ss_pred CCCcEEEEECCCCeeeeEee-CC-----------CCeEEEEEeecCCCEEEEEEc-CCcEEEEecCCCc--EEEEeccCC
Q 005646 373 IDKTVRLWRVGNDHCLRVFP-HS-----------NYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLSCH--VVDWVDIRQ 437 (686)
Q Consensus 373 ~Dg~V~iWd~~~~~~~~~~~-h~-----------~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~~~~~--~~~~~~~~~ 437 (686)
.++++++||..++.++..+. |. .....+.+++ ++..++.... .+.+.+++..... .+....+..
T Consensus 129 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 207 (426)
T d1hzua2 129 WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH-EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP 207 (426)
T ss_dssp ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCS
T ss_pred CCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECC-CCCEEEEecCCCCeEEEEEeccccceeeEEeccCC
Confidence 89999999999998887665 33 3344555555 4444444333 3455555555443 334556777
Q ss_pred cEEEEEEccCCCEEEEEec-CCcEEEEeCCCCeeeeeeeE----------------------------------------
Q 005646 438 IVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEI---------------------------------------- 476 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~~~~~~~~~---------------------------------------- 476 (686)
.+..+.|+|++++++++.. +..+.+++..+++.......
T Consensus 208 ~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~ 287 (426)
T d1hzua2 208 FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN 287 (426)
T ss_dssp SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTT
T ss_pred ccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccc
Confidence 8899999999998887764 55688888877664321110
Q ss_pred ------EeeccccCCCCCeEEEEEeCCCCCeEEE-------EeCCCcEEEEeCCcc------------------------
Q 005646 477 ------CVHSKKKAPCKRITGFQFLPQDSSKVMV-------SCADSQVRILQGPNV------------------------ 519 (686)
Q Consensus 477 ------~~~~~~~~~~~~I~~l~fsp~~~~~l~~-------~s~D~~I~iwd~~~~------------------------ 519 (686)
........|...+..++|+| ++..|++ ++.|++|+|||..+.
T Consensus 288 ~~~~~~~~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~ 366 (426)
T d1hzua2 288 HPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ 366 (426)
T ss_dssp CTTTBTSEEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEE
T ss_pred cccccceEeEEEecCCCceeEEEcCC-CCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEE
Confidence 00011234567788999999 7788775 345788999996531
Q ss_pred eeEcCCCCEEEE-E----eCCCcEEEEeCCCCC
Q 005646 520 IGKYKDGKHIVS-A----GEDSNVYMWNCIGHE 547 (686)
Q Consensus 520 ~~~~~dg~~l~s-g----s~Dg~V~iWd~~~~~ 547 (686)
++|+|||++|+. + +.||.|+|||..+.+
T Consensus 367 ~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k 399 (426)
T d1hzua2 367 PEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 399 (426)
T ss_dssp EEECSSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred EEECCCCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence 358999987743 2 368889999998876
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=1.8e-19 Score=184.46 Aligned_cols=257 Identities=10% Similarity=0.090 Sum_probs=185.4
Q ss_pred CccceeeccceEEEEEcCCccccccccccCcee--cccCCceEEEEEeeCCCEE-EEEeCCCcEEEEEeecCeeeeeecc
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEI--QAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l--~~H~~~I~~l~fspdg~~L-asgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
+++++++.|++|+|||...... ..++ ..+...+.+++|+|||++| ++++.++.|.+||+.+++.+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~-------~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~ 74 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAV-------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE-------EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred eEEEEEcCCCEEEEEECCCCeE-------EEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence 4789999999999999876432 1223 2345568899999999987 4667899999999999886665543
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL 369 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~ 369 (686)
+.. ..+...+..++|+|++ +++
T Consensus 75 ~~~---------------------------------------------------------~~~~~~~~~v~~s~dg~~l~ 97 (337)
T d1pbyb_ 75 STP---------------------------------------------------------EERVKSLFGAALSPDGKTLA 97 (337)
T ss_dssp CBT---------------------------------------------------------TEEEECTTCEEECTTSSEEE
T ss_pred CCC---------------------------------------------------------cccccceeeEEEcCCCcEEE
Confidence 211 0122345578899988 666
Q ss_pred EEE------------CCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCC
Q 005646 370 SAS------------IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ 437 (686)
Q Consensus 370 s~s------------~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~ 437 (686)
++. .+..+.+||..+++.+..+.+...+.+++|+| ++.++++++. .+.+||..+++.........
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~ 174 (337)
T d1pbyb_ 98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQS 174 (337)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEECSTT
T ss_pred EeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEeecCC
Confidence 554 46789999999999999999888899999999 9999998864 57889999988776554433
Q ss_pred cEEEEEEccCCC------------------------EEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 438 IVTAVCYRPDGQ------------------------GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 438 ~V~~v~~spdg~------------------------~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
......+.|++. .+..+..++.+.+|++.++...... ...+...+..+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 247 (337)
T d1pbyb_ 175 WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE-------VRIMDVFYFSTA 247 (337)
T ss_dssp TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE-------EEECSSCEEEEE
T ss_pred ccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE-------ecCCCcceEEEE
Confidence 222222233222 1222233456888888877644321 112345678888
Q ss_pred EeCCCCCeEEEEeCCCcEEEEeCCc--------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 494 FLPQDSSKVMVSCADSQVRILQGPN--------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++| +...++.+ ++.|++||..+ .++++|||++|++++.|++|+|||..+.+
T Consensus 248 ~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 248 VNP-AKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ECT-TSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred ecc-cceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 888 66666554 58999999653 47899999999999999999999999876
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.81 E-value=2.2e-19 Score=192.46 Aligned_cols=287 Identities=8% Similarity=-0.053 Sum_probs=182.9
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEE-EEEeCCCcEEEEEeecCe
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~vWd~~~~~ 283 (686)
....|+++|+++++++.|+.|++||+........ ...+...+|.+.+.+..|+|||++| ++++.+++|+|||..+++
T Consensus 65 ~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~--~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~ 142 (432)
T d1qksa2 65 HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV--AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE 142 (432)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE--EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred eEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE--EEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc
Confidence 3468999999999999999999999876433211 1122345677888888999999986 678889999999999988
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
.+..+..+....... ...+......+.++
T Consensus 143 ~~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~~~~v~~s 171 (432)
T d1qksa2 143 PKKIQSTRGMTYDEQ---------------------------------------------------EYHPEPRVAAILAS 171 (432)
T ss_dssp EEEEEECCEECTTTC---------------------------------------------------CEESCCCEEEEEEC
T ss_pred ceeeeccCCccccce---------------------------------------------------eccCCCceeEEEEC
Confidence 766654332111100 01255667788999
Q ss_pred CCC--EEEEEECCCcEEEEECCCCeeee--EeeCCCCeEEEEEeecCCCEEEEEEc-CCcEEEEecCCCcEEEEecc---
Q 005646 364 KNN--YLLSASIDKTVRLWRVGNDHCLR--VFPHSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLSCHVVDWVDI--- 435 (686)
Q Consensus 364 ~~~--~L~s~s~Dg~V~iWd~~~~~~~~--~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~~~~~~~~~~~~--- 435 (686)
|++ ++++...++.|.+||..+.+... .+.+...+.+++|+| +++++++++. +..|.++|..+++.+.....
T Consensus 172 ~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~sp-dg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~ 250 (432)
T d1qksa2 172 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ 250 (432)
T ss_dssp SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred CCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECC-CCCEEEEeccccceEEEeecccceEEEEeccCcc
Confidence 998 56677788999999998877554 455778899999999 9998877775 45788999988776644432
Q ss_pred ---CCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCeeee-----eeeEEeec-------------------cccCCCC
Q 005646 436 ---RQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLEL-----DAEICVHS-------------------KKKAPCK 487 (686)
Q Consensus 436 ---~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~-----~~~~~~~~-------------------~~~~~~~ 487 (686)
........+...+...++.. .++.+.+|+........ ...+.... ....|..
T Consensus 251 ~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~ 330 (432)
T d1qksa2 251 TPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAE 330 (432)
T ss_dssp SBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred ccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCC
Confidence 22233334443443333332 25566666554321100 00000000 0000101
Q ss_pred CeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc------------ceeEcCCCCEEEEEe-----CCCcEEEEeCCCCC
Q 005646 488 RITGFQFLPQDSSKVMVSCADSQVRILQGPN------------VIGKYKDGKHIVSAG-----EDSNVYMWNCIGHE 547 (686)
Q Consensus 488 ~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~------------~~~~~~dg~~l~sgs-----~Dg~V~iWd~~~~~ 547 (686)
....+++ | +++.+++++.|+.+++|+..+ .++|+|||++|+... .||.|.|||..+.+
T Consensus 331 ~~~sv~v-p-Dg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k 405 (432)
T d1qksa2 331 ISGSVAV-F-DIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 405 (432)
T ss_dssp HHTCEEE-E-EGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred eeeEEEE-E-echhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCce
Confidence 1222333 5 667777777888888886321 356788887775443 46778888887765
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.78 E-value=7.4e-18 Score=180.03 Aligned_cols=305 Identities=9% Similarity=0.029 Sum_probs=197.3
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEE-eCCCcEEEEEeecCe
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASA-GDDGVVRLWQVVEDE 283 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~I~vWd~~~~~ 283 (686)
....|+++|+++++++.|+.|++||+........ .......+|.+.+.+++|+|||++|+++ ..++.+++||..++.
T Consensus 65 ~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~--~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~ 142 (426)
T d1hzua2 65 HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV--AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 142 (426)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE--EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEccCCceeEE--EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc
Confidence 3468999999999999999999999976643221 1123345688888899999999987555 578999999999998
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
.+..+..+........+.... ....+....+....+....... .......... ........++...+..+.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~--~~~~i~~s~d~~~~~~~~~~~~--~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 215 (426)
T d1hzua2 143 PKQIVSTRGMTVDTQTYHPEP--RVAAIIASHEHPEFIVNVKETG--KVLLVNYKDI---DNLTVTSIGAAPFLADGGWD 215 (426)
T ss_dssp EEEEEECCEECSSSCCEESCC--CEEEEEECSSSSEEEEEETTTT--EEEEEECSSS---SSCEEEEEECCSSEEEEEEC
T ss_pred eeEEeeccCCCccceeecCCC--ceeEEEECCCCCEEEEecCCCC--eEEEEEeccc---cceeeEEeccCCccEeeeEC
Confidence 877776554433333332221 2222333333333333322221 1111111100 11223344678889999999
Q ss_pred CCC-EEEEE-ECCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEE--EEEcCCcEEEEecCCC-------cE
Q 005646 364 KNN-YLLSA-SIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFI--SGSIDGKVRIWAVLSC-------HV 429 (686)
Q Consensus 364 ~~~-~L~s~-s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~--sgs~Dg~V~iwd~~~~-------~~ 429 (686)
|++ +++++ ..+..+.+|+..+++.+..+. +......+.+.+.....+. +.+.|+.+.+|+.... +.
T Consensus 216 ~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~ 295 (426)
T d1hzua2 216 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK 295 (426)
T ss_dssp TTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSE
T ss_pred CCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceE
Confidence 999 55554 466789999999999988776 3334445555552322222 2345788888887543 33
Q ss_pred E-EEeccCCcEEEEEEccCCCEEEE-------EecCCcEEEEeCCCCeeeeeeeE-EeeccccCCCCCeEEEEEeCCCCC
Q 005646 430 V-DWVDIRQIVTAVCYRPDGQGGIV-------GSMMGDCRFYNVSDNHLELDAEI-CVHSKKKAPCKRITGFQFLPQDSS 500 (686)
Q Consensus 430 ~-~~~~~~~~V~~v~~spdg~~l~~-------gs~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~I~~l~fsp~~~~ 500 (686)
. .+..|...+..++|+|||++|++ +..+++|+|||+.+++....... ........+..++..++|+| +++
T Consensus 296 ~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk 374 (426)
T d1hzua2 296 VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGD 374 (426)
T ss_dssp EEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSS
T ss_pred eEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCC
Confidence 3 56678888999999999999995 45678999999988765432110 00011234567799999999 676
Q ss_pred eEEEE-----eCCCcEEEEeCCcc
Q 005646 501 KVMVS-----CADSQVRILQGPNV 519 (686)
Q Consensus 501 ~l~~~-----s~D~~I~iwd~~~~ 519 (686)
.+++. +.++.|+|||..+.
T Consensus 375 ~i~vs~~~~~~~~~~i~v~D~~T~ 398 (426)
T d1hzua2 375 EVWFSVWNGKNDSSALVVVDDKTL 398 (426)
T ss_dssp EEEEEECCCTTSCCEEEEEETTTT
T ss_pred EEEEEEecCCCCCCeEEEEECCCC
Confidence 66443 35788999998764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.78 E-value=1.6e-18 Score=177.93 Aligned_cols=264 Identities=8% Similarity=0.009 Sum_probs=184.8
Q ss_pred eeecCCCccceeeccceEEEEEcCCccccccccccCceec-ccCCceEEEEEeeCCCEEE-EEeCCCcEEEEEeecCeee
Q 005646 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQ-AHDGSILTMKFSPDGQYLA-SAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 208 ~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~La-sgs~Dg~I~vWd~~~~~~~ 285 (686)
+++.+++++++++.+++|.|||..+... ..+++ .|...+.+++|+|||++|+ ++..++.|++||+.+++.+
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~-------~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~ 75 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDTV-------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT 75 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEE-------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCCCCcEEEEEcCCCEEEEEECCCCCE-------EEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeee
Confidence 5778899999999999999999876532 12333 3566788999999999874 5567899999999998866
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
..+...... ..+...+..++|+|+
T Consensus 76 ~~~~~~~~~--------------------------------------------------------~~~~~~~~~v~~s~D 99 (346)
T d1jmxb_ 76 FHANLSSVP--------------------------------------------------------GEVGRSMYSFAISPD 99 (346)
T ss_dssp EEEESCCST--------------------------------------------------------TEEEECSSCEEECTT
T ss_pred eeecccccc--------------------------------------------------------cccCCceEEEEEecC
Confidence 555432110 012234567889999
Q ss_pred C-EEEEEE------------CCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE
Q 005646 366 N-YLLSAS------------IDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 366 ~-~L~s~s------------~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
| +|+.++ .+..+.+|+..+++....+. ....+..+.+++ ++.++++ ++.+.+|++.+++.
T Consensus 100 G~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~ 175 (346)
T d1jmxb_ 100 GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-DGSLYVA---GPDIYKMDVKTGKY 175 (346)
T ss_dssp SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-TSCEEEE---SSSEEEECTTTCCE
T ss_pred CCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC-CCEEEEe---CCcceEEEccCCCE
Confidence 8 665554 47889999998877654443 456677777776 6666654 35689999999988
Q ss_pred EEEeccCCcEEEEEEccCCCEEE--------------------------EEecCCcEEEEeCCCCeeeeeeeEEeecccc
Q 005646 430 VDWVDIRQIVTAVCYRPDGQGGI--------------------------VGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (686)
Q Consensus 430 ~~~~~~~~~V~~v~~spdg~~l~--------------------------~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 483 (686)
+........+..+.++|++..++ ++..++.+.+||+.++...... ..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 248 (346)
T d1jmxb_ 176 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE-------FA 248 (346)
T ss_dssp EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE-------EE
T ss_pred EEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEE-------ee
Confidence 87666555555566666655432 2233445666776665543211 12
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc--------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.+...+..+.+++.+ ..++... ++.|++||..+ .++++|||++|++++.|+.|+|||+.+.+
T Consensus 249 ~~~~~~~~~~~~~~~-~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~ 324 (346)
T d1jmxb_ 249 DLTELYFTGLRSPKD-PNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 324 (346)
T ss_dssp ECSSCEEEEEECSSC-TTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred cccceeEEEEEeCCC-CEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCC
Confidence 244568888999844 4454443 46799999643 47899999999999999999999999876
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1.4e-16 Score=162.55 Aligned_cols=265 Identities=12% Similarity=0.207 Sum_probs=181.5
Q ss_pred cceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe-CCCcEEEEEeecCeeeeeeccCCCC
Q 005646 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-DDGVVRLWQVVEDERLTEVDIPEID 294 (686)
Q Consensus 216 l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~vWd~~~~~~~~~~~~~~~~ 294 (686)
+++++.+++|+||++..... +. . .....|.+.|..|+|+|||++|++++ .|+.|++|++........+
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~-l~---~-~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~------ 75 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGA-LT---L-TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF------ 75 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSC-EE---E-EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE------
T ss_pred EEECCCCCcEEEEEEcCCCC-eE---E-EEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE------
Confidence 36678999999999875321 11 1 11235889999999999999996655 5899999999765421111
Q ss_pred CcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC
Q 005646 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI 373 (686)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~ 373 (686)
.....+...+..++|+|+| +|++++.
T Consensus 76 -----------------------------------------------------~~~~~~~~~p~~l~~spDg~~l~v~~~ 102 (333)
T d1ri6a_ 76 -----------------------------------------------------AAESALPGSLTHISTDHQGQFVFVGSY 102 (333)
T ss_dssp -----------------------------------------------------EEEEECSSCCSEEEECTTSSEEEEEET
T ss_pred -----------------------------------------------------eeecccCCCceEEEEcCCCCEEeeccc
Confidence 0111244567789999999 7777774
Q ss_pred -CCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEc-CCcEEEEecCCCcEEE-------EeccCCcEEE
Q 005646 374 -DKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLSCHVVD-------WVDIRQIVTA 441 (686)
Q Consensus 374 -Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~~~~~~~~-------~~~~~~~V~~ 441 (686)
++.|.+|+........... +...+.++.|+| +++++++++. +..|.+|+........ ..........
T Consensus 103 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~ 181 (333)
T d1ri6a_ 103 NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH 181 (333)
T ss_dssp TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEE
T ss_pred CCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccE
Confidence 7789999988776554433 778899999999 8888888775 4579999987654221 1223455788
Q ss_pred EEEccCCCEEEEEe-cCCcEEEEeCCCCeeeeee--eEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC-
Q 005646 442 VCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDA--EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP- 517 (686)
Q Consensus 442 v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~- 517 (686)
++|++++.+++... ..+...+|+.......... .................+.++++....++.+..++.+.+|+..
T Consensus 182 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~ 261 (333)
T d1ri6a_ 182 MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 261 (333)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcC
Confidence 99999999887654 4567888886544332222 1111122223445677889999444455556677889988632
Q ss_pred -----------------cceeEcCCCCEEEEEe-CCCcEEEEeCCC
Q 005646 518 -----------------NVIGKYKDGKHIVSAG-EDSNVYMWNCIG 545 (686)
Q Consensus 518 -----------------~~~~~~~dg~~l~sgs-~Dg~V~iWd~~~ 545 (686)
..++++|||++|++++ .++.|+||+++.
T Consensus 262 ~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 262 DGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp TSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred CCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence 2478999999988776 468899997654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.75 E-value=5.1e-16 Score=155.75 Aligned_cols=231 Identities=14% Similarity=0.200 Sum_probs=179.0
Q ss_pred ceeeecCCCcc-ceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEE-EeCCCcEEEEEeecCe
Q 005646 206 GERVRLNEEDA-MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLAS-AGDDGVVRLWQVVEDE 283 (686)
Q Consensus 206 ~~~~s~~~~~l-~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~I~vWd~~~~~ 283 (686)
...|+++++++ +++..++.|++||...... ...+..|. .+..+.|++++.+++. +..++.+.+|+..+++
T Consensus 36 ~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (301)
T d1l0qa2 36 GAVISPDGTKVYVANAHSNDVSIIDTATNNV-------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT 107 (301)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred EEEEeCCCCEEEEEECCCCEEEEEECCCCce-------eeeeeccc-cccccccccccccccccccccceeeecccccce
Confidence 35788899877 5677889999999875432 23445554 4689999999986654 5567889999998776
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
....+ . +.....++.++
T Consensus 108 ~~~~~--------------------------------------------------------------~-~~~~~~~~~~~ 124 (301)
T d1l0qa2 108 VAGTV--------------------------------------------------------------K-TGKSPLGLALS 124 (301)
T ss_dssp EEEEE--------------------------------------------------------------E-CSSSEEEEEEC
T ss_pred eeeec--------------------------------------------------------------c-ccccceEEEee
Confidence 33322 2 33566789999
Q ss_pred CCC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC-CcEEEEecCCCcEEEEeccCCcEE
Q 005646 364 KNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHVVDWVDIRQIVT 440 (686)
Q Consensus 364 ~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~~~~~~~~~~~V~ 440 (686)
|++ .++++..++.+.+|+..+...+..+.+...+.+++++| ++.++++++.+ +.+.+|+...............+.
T Consensus 125 ~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (301)
T d1l0qa2 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPS 203 (301)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEE
T ss_pred cCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeec-cccceeeecccccccccccccceeeeecccccCCcc
Confidence 999 45667778999999999999999999888899999999 88877777765 677788888888887777788889
Q ss_pred EEEEccCCCEEEEEec---CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE-EEEeCCCcEEEEeC
Q 005646 441 AVCYRPDGQGGIVGSM---MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV-MVSCADSQVRILQG 516 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l-~~~s~D~~I~iwd~ 516 (686)
.++|+++++.++++.. ++.|++||+.++++..... ....+.+++|+| ++++| ++++.|+.|++||.
T Consensus 204 ~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~---------~~~~~~~va~sp-dg~~l~va~~~~~~i~v~D~ 273 (301)
T d1l0qa2 204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP---------VGPDPAGIAVTP-DGKKVYVALSFCNTVSVIDT 273 (301)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE---------CCSSEEEEEECT-TSSEEEEEETTTTEEEEEET
T ss_pred eeeccccccccccccccceeeeeeeeecCCCeEEEEEc---------CCCCEEEEEEeC-CCCEEEEEECCCCeEEEEEC
Confidence 9999999998877654 4679999999887643211 124589999999 66665 56678999999998
Q ss_pred Cc
Q 005646 517 PN 518 (686)
Q Consensus 517 ~~ 518 (686)
.+
T Consensus 274 ~t 275 (301)
T d1l0qa2 274 AT 275 (301)
T ss_dssp TT
T ss_pred CC
Confidence 74
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=1.9e-17 Score=168.96 Aligned_cols=265 Identities=9% Similarity=0.028 Sum_probs=177.8
Q ss_pred CEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccc
Q 005646 263 QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRI 342 (686)
Q Consensus 263 ~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (686)
+||+|++.|++|+|||+.+++.+..+..+
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~--------------------------------------------------- 30 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIA--------------------------------------------------- 30 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECT---------------------------------------------------
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECC---------------------------------------------------
Confidence 58999999999999999998865554322
Q ss_pred cCCCeEEeccCCCCeeEEEeeCCC-EE-EEEECCCcEEEEECCCCeeeeEee-C-----CCCeEEEEEeecCCCEEEEEE
Q 005646 343 LEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFP-H-----SNYVTCVHFNPVDDNYFISGS 414 (686)
Q Consensus 343 ~~~~~~~l~~h~~~V~~l~~s~~~-~L-~s~s~Dg~V~iWd~~~~~~~~~~~-h-----~~~V~~v~fsp~~~~~l~sgs 414 (686)
.+...+.+++|+||| +| ++++.++.|.+||+.+++.+..+. + ...+..++|+| ++++++++.
T Consensus 31 ---------~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~ 100 (337)
T d1pbyb_ 31 ---------DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYE 100 (337)
T ss_dssp ---------TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEE
T ss_pred ---------CCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcC-CCcEEEEee
Confidence 244567789999999 55 566789999999999999988876 2 23456799999 999888876
Q ss_pred ------------cCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc
Q 005646 415 ------------IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482 (686)
Q Consensus 415 ------------~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 482 (686)
.+..+.+||..+++..........+..++|+|||+++++++ +.+.+||..+++....... ....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~~d~~~~~~~~~~~~--~~~~ 176 (337)
T d1pbyb_ 101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG--RDLHVMDPEAGTLVEDKPI--QSWE 176 (337)
T ss_dssp EEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--SSEEEEETTTTEEEEEECS--TTTT
T ss_pred cCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc--CCcceeeeecCcEEEEeec--CCcc
Confidence 36789999999999988888888899999999999999986 4578899988776542211 1100
Q ss_pred cCCCCCeEEEEEeCC----------------CCCeEEEEeCCCcEEEEeCCc----------------ceeEcCCCCEEE
Q 005646 483 KAPCKRITGFQFLPQ----------------DSSKVMVSCADSQVRILQGPN----------------VIGKYKDGKHIV 530 (686)
Q Consensus 483 ~~~~~~I~~l~fsp~----------------~~~~l~~~s~D~~I~iwd~~~----------------~~~~~~dg~~l~ 530 (686)
...........+.+. +.........++.+.+|+..+ ...+.+++.+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (337)
T d1pbyb_ 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF 256 (337)
T ss_dssp TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEE
Confidence 000000000111110 111112223334566665442 134556777776
Q ss_pred EEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCcc
Q 005646 531 SAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQE 610 (686)
Q Consensus 531 sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~ 610 (686)
++ ++.|++||+.+++ .+..+. ..+....++|+|| +..
T Consensus 257 ~~--~~~i~v~d~~~~~--------~~~~~~-----------------------------~~~~~~~~~~s~d----G~~ 293 (337)
T d1pbyb_ 257 GA--YNVLESFDLEKNA--------SIKRVP-----------------------------LPHSYYSVNVSTD----GST 293 (337)
T ss_dssp EE--ESEEEEEETTTTE--------EEEEEE-----------------------------CSSCCCEEEECTT----SCE
T ss_pred Ec--cccEEEEECCCCc--------EEEEEc-----------------------------CCCCEEEEEECCC----CCE
Confidence 65 4788888887754 111110 0123345678898 555
Q ss_pred ccccCCCCCCCCCCCCcCCCccccc
Q 005646 611 YVFESFPKGCATWPEEKLPALSQLS 635 (686)
Q Consensus 611 ~~~~s~d~~~~~W~~~~~~~~~~~~ 635 (686)
++.++.++.+.+|+.+++.....+.
T Consensus 294 l~v~~~~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 294 VWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EEEESBSSEEEEEETTTCCEEEEEE
T ss_pred EEEEeCCCcEEEEECCCCcEEEEEE
Confidence 6677788899999988877655543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.70 E-value=1.4e-17 Score=170.77 Aligned_cols=300 Identities=8% Similarity=-0.040 Sum_probs=190.7
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEe
Q 005646 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVF 335 (686)
Q Consensus 256 l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (686)
++|+++++||++++.|++|.|||+.+++.+..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~--------------------------------------------- 36 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--------------------------------------------- 36 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC---------------------------------------------
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc---------------------------------------------
Confidence 47899999999999999999999999875544432
Q ss_pred CCccccccCCCeEEeccCCCCeeEEEeeCCC-EE-EEEECCCcEEEEECCCCeeeeEeeCC-------CCeEEEEEeecC
Q 005646 336 PPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHS-------NYVTCVHFNPVD 406 (686)
Q Consensus 336 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L-~s~s~Dg~V~iWd~~~~~~~~~~~h~-------~~V~~v~fsp~~ 406 (686)
.|...+.+++|+||| +| ++++.++.|++||+.+++.+..+... ..+..++|+| +
T Consensus 37 ----------------~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~-D 99 (346)
T d1jmxb_ 37 ----------------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-D 99 (346)
T ss_dssp ----------------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-T
T ss_pred ----------------CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEec-C
Confidence 244567899999999 54 56678999999999999998877622 2466899999 9
Q ss_pred CCEEEEEE------------cCCcEEEEecCCCcEE---EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee
Q 005646 407 DNYFISGS------------IDGKVRIWAVLSCHVV---DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 407 ~~~l~sgs------------~Dg~V~iwd~~~~~~~---~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
++++++++ .++.+.+||..+++.. ........+..+.++++++.++. ++.+.+|++.+++..
T Consensus 100 G~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 176 (346)
T d1jmxb_ 100 GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYT 176 (346)
T ss_dssp SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEE
T ss_pred CCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccCCCEE
Confidence 99888775 4678999999887643 23334455667778888876654 356899999877654
Q ss_pred eeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCc
Q 005646 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAH 551 (686)
Q Consensus 472 ~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~ 551 (686)
.... .......+.++|.....++....++.+.+++... ........++++..++.+.+|++.++.....
T Consensus 177 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (346)
T d1jmxb_ 177 VALP---------LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA--RFKDDKQDPATADLLYGYLSVDLKTGKTHTQ 245 (346)
T ss_dssp EEEC---------STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE--EC-------CCCEEEEEEEEEETTTCCEEEE
T ss_pred EEEe---------cCCCccceEEeccccEEEEEecCCCceEeeeeee--eeccCceeEeeccCCceEEEEECCCCceEEE
Confidence 3211 1123445556673333444444555555554221 1223555666667777788888877652111
Q ss_pred cc---cccccccccccCCcEEE-ecCCCCcCCCCCCCCcccccC-CCCCcccccCCCccccCccccccCCCCCCCCCCCC
Q 005646 552 DQ---AKTIRSLERFTTNASIA-IPWCGLKCGNAEKEPQLHVSD-DDSPENLAFAPARFSLGQEYVFESFPKGCATWPEE 626 (686)
Q Consensus 552 ~~---~~~~~~~~~~~~~~~v~-~s~~g~~~~~~~~g~~l~~~~-~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~ 626 (686)
.. ...+...........++ ...+....|+..++..+..+. ++....++|+|| +..++.++.++.+.+|+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~D----G~~l~v~~~d~~v~v~D~~ 321 (346)
T d1jmxb_ 246 EFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKK----GDKLYLGGTFNDLAVFNPD 321 (346)
T ss_dssp EEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSS----SSCEEEESBSSEEEEEETT
T ss_pred EeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECc
Confidence 00 01111111111111111 111223567777777766554 345667899999 5667777888999999988
Q ss_pred cCCCccccc
Q 005646 627 KLPALSQLS 635 (686)
Q Consensus 627 ~~~~~~~~~ 635 (686)
++.....+.
T Consensus 322 t~~~i~~i~ 330 (346)
T d1jmxb_ 322 TLEKVKNIK 330 (346)
T ss_dssp TTEEEEEEE
T ss_pred cCCEEEEEE
Confidence 777555543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.65 E-value=1.3e-13 Score=142.88 Aligned_cols=279 Identities=7% Similarity=-0.061 Sum_probs=170.4
Q ss_pred ceeeecCCCcccee-----eccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe----------C
Q 005646 206 GERVRLNEEDAMFC-----SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------D 270 (686)
Q Consensus 206 ~~~~s~~~~~l~~g-----~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~ 270 (686)
...+++++..++.. +..+.|.|||...... ..++.+|..+ .++|+|||++|++++ .
T Consensus 25 ~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~-------~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~ 95 (373)
T d2madh_ 25 DEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSI-------LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKR 95 (373)
T ss_pred ccccCCCCCEEEEEcccccCCCceEEEEECCCCCE-------EEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccccc
Confidence 35577888877553 2345688887654321 1234445443 799999999999875 4
Q ss_pred CCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe
Q 005646 271 DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (686)
Q Consensus 271 Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (686)
++.|++||..+++.+..+..+..........+ ..+.+..++........ .......+++.. ....
T Consensus 96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~------~~~~~s~dg~~~~v~~~-~~~~~~~~~~~~--------~~~~ 160 (373)
T d2madh_ 96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYS------WMNANTPNNADLLFFQF-AAGPAVGLVVQG--------GSSD 160 (373)
T ss_pred ceEEEEEECCCCcEEEEEecCCcceeEeccCC------CcEEEEeCCCcEEEEEE-cCCCceEEeecc--------CCeE
Confidence 57899999999998887766544322211110 11122222221111111 111111111111 1122
Q ss_pred ccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-------CCCCeEEEEEeecCCCEEEEEEcCCcEEE
Q 005646 351 HGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-------HSNYVTCVHFNPVDDNYFISGSIDGKVRI 421 (686)
Q Consensus 351 ~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-------h~~~V~~v~fsp~~~~~l~sgs~Dg~V~i 421 (686)
..+.....++.++|++ .+++.+.|+++.+|+...+....... +......+.+.+ +..++..+.++++.+
T Consensus 161 ~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~ 238 (373)
T d2madh_ 161 DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK--SGRIVWPVYSGKILQ 238 (373)
T ss_pred EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC--CceEEEecCCceEEE
Confidence 3445566788999998 67789999999999999988776654 112233344444 445666778999999
Q ss_pred EecCCCcEEEEec-------------cCCcEEEEEEccCCCEEE----------EEecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 422 WAVLSCHVVDWVD-------------IRQIVTAVCYRPDGQGGI----------VGSMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 422 wd~~~~~~~~~~~-------------~~~~V~~v~~spdg~~l~----------~gs~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
|+..+........ .......++++|++..++ ....++.+.+||+.+++.....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~---- 314 (373)
T d2madh_ 239 ADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI---- 314 (373)
T ss_pred EEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe----
Confidence 9998776432211 112234566677666554 3455677889998887654321
Q ss_pred eccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCC--EEEEEeCCCcEEEEeCCCCC
Q 005646 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGK--HIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~--~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.+...+.+++|+| ||+ ++++++.|+.|+|||+.+++
T Consensus 315 -----~~~~~~~~~a~sp----------------------------DG~~~l~vt~~~d~~v~v~D~~tg~ 352 (373)
T d2madh_ 315 -----SLGHDVDAISVAQ----------------------------DGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred -----cCCCCeeEEEECC----------------------------CCCEEEEEEeCCCCeEEEEECCCCC
Confidence 2335578888888 777 34688899999999999876
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.64 E-value=2.9e-14 Score=146.71 Aligned_cols=273 Identities=12% Similarity=0.078 Sum_probs=174.3
Q ss_pred eeeecCCCcccee-----eccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe----------CC
Q 005646 207 ERVRLNEEDAMFC-----SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DD 271 (686)
Q Consensus 207 ~~~s~~~~~l~~g-----~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~D 271 (686)
...++++..++.. .....|.|||..+... ..++..+.. ..++|||||++|++++ .|
T Consensus 7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~-------~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d 77 (355)
T d2bbkh_ 7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------IGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERT 77 (355)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------EEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcE-------EEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCC
Confidence 3456778776543 3466799999875432 123334443 3799999999887653 47
Q ss_pred CcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEec
Q 005646 272 GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351 (686)
Q Consensus 272 g~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 351 (686)
+.|++||+.+++.+..+..+.... .
T Consensus 78 ~~v~v~D~~t~~~~~~~~~~~~~~-------------------------------------------------------~ 102 (355)
T d2bbkh_ 78 DYVEVFDPVTLLPTADIELPDAPR-------------------------------------------------------F 102 (355)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCC-------------------------------------------------------C
T ss_pred CEEEEEECCCCCEEEEEecCCcce-------------------------------------------------------e
Confidence 899999999988766554332110 0
Q ss_pred cCCCCeeEEEeeCCC-EEEEEE--CCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 352 GHSGEILDLSWSKNN-YLLSAS--IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~-~L~s~s--~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
........++|++++ +++.++ .+..+.+|+..+++.+..+........ +.. ....+++.+.||+..++......
T Consensus 103 ~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~dg~~~~v~~~~~~ 179 (355)
T d2bbkh_ 103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI--FPT-APDTFFMHCRDGSLAKVAFGTEG 179 (355)
T ss_dssp CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE--EEE-ETTEEEEEETTSCEEEEECCSSS
T ss_pred ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE--eec-CCcceEEEcCCCCEEEEEecCCC
Confidence 122334568899999 665554 567899999999999888774332221 111 34455555666666665544332
Q ss_pred EEEEe-------ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc----cCCCCCeEEEEEeCC
Q 005646 429 VVDWV-------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK----KAPCKRITGFQFLPQ 497 (686)
Q Consensus 429 ~~~~~-------~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~I~~l~fsp~ 497 (686)
..... .+...+....+.+++..++.++.++.+++|++..+.............. .........+++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~- 258 (355)
T d2bbkh_ 180 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR- 258 (355)
T ss_dssp CCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-
T ss_pred eEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC-
Confidence 22111 2233355667888888999999999999999988765432221111100 00112345588888
Q ss_pred CCCeEEEEeCC----------CcEEEEeCCc--------------ceeEcCCCC--EEEEEeCCCcEEEEeCCCCC
Q 005646 498 DSSKVMVSCAD----------SQVRILQGPN--------------VIGKYKDGK--HIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 498 ~~~~l~~~s~D----------~~I~iwd~~~--------------~~~~~~dg~--~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++..+++...+ ..|.+||..+ .++++|||+ ++++++.|+.|+|||+.+++
T Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 259 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 334 (355)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence 66666665433 4689998653 377899998 45677889999999999876
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.58 E-value=5.2e-13 Score=138.31 Aligned_cols=266 Identities=9% Similarity=-0.074 Sum_probs=171.8
Q ss_pred cccCCceEEEEEeeCCCEEEEE-----eCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 247 QAHDGSILTMKFSPDGQYLASA-----GDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasg-----s~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
.+|.+++.+++++|||+.++.. +.++.|.+||..+++.+..+
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~--------------------------------- 63 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV--------------------------------- 63 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEE---------------------------------
Confidence 4688999999999999988764 23457999998887744332
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEE----------CCCcEEEEECCCCeeeeE
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS----------IDKTVRLWRVGNDHCLRV 390 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s----------~Dg~V~iWd~~~~~~~~~ 390 (686)
..+.. ..++|+||| +|++++ .++.|.+||+.+++.+..
T Consensus 64 -----------------------------~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~ 112 (373)
T d2madh_ 64 -----------------------------NGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD 112 (373)
T ss_pred -----------------------------eCCCC--ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEE
Confidence 22322 268999999 777664 457899999999999887
Q ss_pred ee-CCCC-------eEEEEEeecCCCEEEEEE--cCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEE-EEEecCCc
Q 005646 391 FP-HSNY-------VTCVHFNPVDDNYFISGS--IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGG-IVGSMMGD 459 (686)
Q Consensus 391 ~~-h~~~-------V~~v~fsp~~~~~l~sgs--~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l-~~gs~dg~ 459 (686)
+. +... ...+.|+| +++.++... .++.+.+|+..+.+..... ....++.++|+|+.+ ++.+.||.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~g~~~~v~~~~dg~ 188 (373)
T d2madh_ 113 IELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVVQGGSSDDQLL---SSPTCYHIHPGAPSTFYLLCAQGG 188 (373)
T ss_pred EecCCcceeEeccCCCcEEEEe-CCCcEEEEEEcCCCceEEeeccCCeEEEEe---ccceeEEEecCCCcEEEEEcCCCe
Confidence 76 3332 25578888 777665554 4567899998887765433 345678999999765 57888999
Q ss_pred EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------------
Q 005646 460 CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--------------------- 518 (686)
Q Consensus 460 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~--------------------- 518 (686)
+.+|+................ .........+.+.+ ...++..+.++.+.+|+..+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (373)
T d2madh_ 189 LAKTDHAGGAAGAGLVGAMLT--AAQNLLTQPAQANK--SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTW 264 (373)
T ss_pred EEEEEcCCceeeEEEeeeccc--cCccceeeeEEECC--CceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeee
Confidence 999999887655432221111 11111122333333 34556666777887776432
Q ss_pred ------ceeEcCCCC----------EEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCC------
Q 005646 519 ------VIGKYKDGK----------HIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGL------ 576 (686)
Q Consensus 519 ------~~~~~~dg~----------~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~------ 576 (686)
.+++++++. .+++...++.|.+||..+++.. ..++.-.....++|+.+|.
T Consensus 265 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~--------~~~~~~~~~~~~a~spDG~~~l~vt 336 (373)
T d2madh_ 265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS--------SQISLGHDVDAISVAQDGGPDLYAL 336 (373)
T ss_pred ccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEE--------EEecCCCCeeEEEECCCCCEEEEEE
Confidence 123344444 4455666778999999887622 1221111123344444443
Q ss_pred -------cCCCCCCCCcccccCC
Q 005646 577 -------KCGNAEKEPQLHVSDD 592 (686)
Q Consensus 577 -------~~~~~~~g~~l~~~~~ 592 (686)
.+||..+|+.+..+..
T Consensus 337 ~~~d~~v~v~D~~tg~~~~~~~~ 359 (373)
T d2madh_ 337 SAGTEVLHIYDAGAGDQDQSTVE 359 (373)
T ss_pred eCCCCeEEEEECCCCCEEEEECC
Confidence 4788888888877763
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=6.6e-13 Score=134.76 Aligned_cols=193 Identities=16% Similarity=0.168 Sum_probs=136.4
Q ss_pred cCCCCeeEEEeeCCC-EEEE-EECCCcEEEEECCCCeeee----EeeCCCCeEEEEEeecCCCEEEEEEc-CCcEEEEec
Q 005646 352 GHSGEILDLSWSKNN-YLLS-ASIDKTVRLWRVGNDHCLR----VFPHSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAV 424 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~-~L~s-~s~Dg~V~iWd~~~~~~~~----~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~ 424 (686)
.|.+.+..|+|+||| +|++ +..|+.|++|++....... ...+...+..++|+| ++++|++++. ++.|++|+.
T Consensus 34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~ 112 (333)
T d1ri6a_ 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRL 112 (333)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcC-CCCEEeecccCCCceeeecc
Confidence 477889999999999 6654 4558999999998664332 223566788999999 9999988885 678999998
Q ss_pred CCCcEE---EEeccCCcEEEEEEccCCCEEEEEec-CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCC
Q 005646 425 LSCHVV---DWVDIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (686)
Q Consensus 425 ~~~~~~---~~~~~~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~ 500 (686)
...... ....+...+.++.++|+++++++++. +..+.+|+............... ..........++|++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~g~~p~~i~~~~~~~~ 190 (333)
T d1ri6a_ 113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV--TTVEGAGPRHMVFHPNEQY 190 (333)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE--ECSTTCCEEEEEECTTSSE
T ss_pred ccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceee--eeecCCCccEEEEecccee
Confidence 876544 34456677889999999998888765 45699999876554332222111 2234455788999994444
Q ss_pred eEEEEeCCCcEEEEeCC-------------------------cceeEcCCCCEEEEE-eCCCcEEEEeCCCCC
Q 005646 501 KVMVSCADSQVRILQGP-------------------------NVIGKYKDGKHIVSA-GEDSNVYMWNCIGHE 547 (686)
Q Consensus 501 ~l~~~s~D~~I~iwd~~-------------------------~~~~~~~dg~~l~sg-s~Dg~V~iWd~~~~~ 547 (686)
.+.+....+...+++.. ...++++++++++.. ..++.+.+|++....
T Consensus 191 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~ 263 (333)
T d1ri6a_ 191 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG 263 (333)
T ss_dssp EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred EEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCC
Confidence 44455566677777632 124577888877665 467889999987654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.43 E-value=5.8e-12 Score=129.05 Aligned_cols=249 Identities=7% Similarity=-0.046 Sum_probs=153.7
Q ss_pred ceeeecCCCcccee----------eccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe--CCCc
Q 005646 206 GERVRLNEEDAMFC----------SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG--DDGV 273 (686)
Q Consensus 206 ~~~~s~~~~~l~~g----------~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs--~Dg~ 273 (686)
...|+++++++++. ..++.|++||...................+......++|+|+|++++.+. .+..
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~ 130 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 130 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCce
Confidence 35788888877654 45789999998764321110000001111223345689999999888764 4678
Q ss_pred EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccC
Q 005646 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (686)
Q Consensus 274 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 353 (686)
+.+|+..+++.+..+..+... ..+ . ......+.+..++...+............. ... ....+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~---~~~-~--~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~--~~~---------~~~~~ 193 (355)
T d2bbkh_ 131 VGVVDLEGKAFKRMLDVPDCY---HIF-P--TAPDTFFMHCRDGSLAKVAFGTEGTPEITH--TEV---------FHPED 193 (355)
T ss_dssp EEEEETTTTEEEEEEECCSEE---EEE-E--EETTEEEEEETTSCEEEEECCSSSCCEEEE--CCC---------CSCTT
T ss_pred eeeeecCCCcEeeEEecCCcc---eEe-e--cCCcceEEEcCCCCEEEEEecCCCeEEEEe--ccc---------cccee
Confidence 999999999887776543211 000 0 011112222222222222211111111110 000 01134
Q ss_pred CCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeE--ee-----------CCCCeEEEEEeecCCCEEEEEEcC---
Q 005646 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRV--FP-----------HSNYVTCVHFNPVDDNYFISGSID--- 416 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~--~~-----------h~~~V~~v~fsp~~~~~l~sgs~D--- 416 (686)
...+....+.+++ .++.++.++.+.+|++..+..... .. .......++++| ++..++....+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~~~~~~ 272 (355)
T d2bbkh_ 194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDE 272 (355)
T ss_dssp SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCT
T ss_pred cceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC-CCCeEEEEeccCCc
Confidence 4455566777776 889999999999999988754321 11 123345688888 88877776544
Q ss_pred -------CcEEEEecCCCcEEEEeccCCcEEEEEEccCCC--EEEEEecCCcEEEEeCCCCeeee
Q 005646 417 -------GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ--GGIVGSMMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 417 -------g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~--~l~~gs~dg~i~iwd~~~~~~~~ 472 (686)
..|.+||..+++.+....+...+.+++|+|||+ +++++..|+.|++||+.+++...
T Consensus 273 ~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~ 337 (355)
T d2bbkh_ 273 WRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 337 (355)
T ss_dssp TCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred eeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEE
Confidence 369999999999887777777889999999998 35567779999999999987643
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.28 E-value=3.5e-11 Score=124.54 Aligned_cols=239 Identities=10% Similarity=0.024 Sum_probs=152.8
Q ss_pred ecccCCceEEEEEeeCCCEEEEEe----------CCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeecc
Q 005646 246 IQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315 (686)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (686)
+.+|..+ .++|+|||++|++++ .|++|++||..+++.+..+..+.....
T Consensus 62 ~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~------------------- 120 (368)
T d1mdah_ 62 SLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF------------------- 120 (368)
T ss_dssp EEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC-------------------
T ss_pred EeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcccee-------------------
Confidence 4445444 589999999988764 377899999999887666654322100
Q ss_pred ccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEE-CCCcEEEEECCCCeeeeEeeC
Q 005646 316 EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS-IDKTVRLWRVGNDHCLRVFPH 393 (686)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s-~Dg~V~iWd~~~~~~~~~~~h 393 (686)
........++|+||| +|+.+. .++.+.+||+.+++.+..+..
T Consensus 121 ------------------------------------~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~ 164 (368)
T d1mdah_ 121 ------------------------------------SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS 164 (368)
T ss_dssp ------------------------------------CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC
T ss_pred ------------------------------------cccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec
Confidence 011223468999999 666665 579999999999999988873
Q ss_pred CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe-------ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCC
Q 005646 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 394 ~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-------~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~ 466 (686)
.... .+.|.....++..+.||++.+|++......... .+...+..+.+.+++..+.. ..+.++++++.
T Consensus 165 ~~~~---~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~ 239 (368)
T d1mdah_ 165 ASCF---HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA--VASSILQGDIP 239 (368)
T ss_dssp SSCC---CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECC
T ss_pred cCcc---eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe--cCCCEEEEeec
Confidence 2221 122325678888889999999988765433221 22334556778888765554 45677788877
Q ss_pred CCeeeeeeeEEeeccc----cCCCCCeEEEEEeCCCCCeEEEEeC-C--------CcEEEEeCCc--------------c
Q 005646 467 DNHLELDAEICVHSKK----KAPCKRITGFQFLPQDSSKVMVSCA-D--------SQVRILQGPN--------------V 519 (686)
Q Consensus 467 ~~~~~~~~~~~~~~~~----~~~~~~I~~l~fsp~~~~~l~~~s~-D--------~~I~iwd~~~--------------~ 519 (686)
.+.............. .........++++| ++..+++... + ..|.+||..+ .
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~ 318 (368)
T d1mdah_ 240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDA 318 (368)
T ss_dssp SSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECE
T ss_pred CCceEEEeecccccceeeeeeecCCCceeEEEcC-CCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeE
Confidence 6554332111110000 00012234578888 5555544422 2 3588898653 3
Q ss_pred eeEcCCCC--EEEEEeCCCcEEEEeCCCCC
Q 005646 520 IGKYKDGK--HIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 520 ~~~~~dg~--~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++++|||+ .++++..|+.|+|||..+++
T Consensus 319 ~a~spDG~~~ly~s~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 319 IIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred EEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 67999997 34677789999999999876
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.25 E-value=4.3e-11 Score=124.71 Aligned_cols=252 Identities=13% Similarity=0.028 Sum_probs=162.1
Q ss_pred cceeeccceEEEEEcCCccccccccc------------------------cCceecccCCceEEEEEeeCCCEEEEEe-C
Q 005646 216 AMFCSKVQRVKVYHCKKRSKELSALY------------------------KGQEIQAHDGSILTMKFSPDGQYLASAG-D 270 (686)
Q Consensus 216 l~~g~~d~~v~vw~~~~~~~~~~~~~------------------------~~~~l~~H~~~I~~l~fspdg~~Lasgs-~ 270 (686)
+++++.+|.|.||++..... +..+. ....-..|.-.+....++|||++|+... .
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~-l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~ 92 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRE-LMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA 92 (441)
T ss_dssp EEECBTTCCEEEEEETTTEE-EEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeCCCCCcEEEEeCCCCcE-EEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence 46678899999999754321 11100 0111223555566677789999996664 6
Q ss_pred CCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe
Q 005646 271 DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (686)
Q Consensus 271 Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (686)
+..|.++|+.+++....+..+
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP----------------------------------------------------------- 113 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIP----------------------------------------------------------- 113 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECT-----------------------------------------------------------
T ss_pred CCEEEEEECCCCcEeeEEecC-----------------------------------------------------------
Confidence 789999999998865544332
Q ss_pred ccCCCCeeEEEeeCCC---EEEEEECCC-----------------cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEE
Q 005646 351 HGHSGEILDLSWSKNN---YLLSASIDK-----------------TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF 410 (686)
Q Consensus 351 ~~h~~~V~~l~~s~~~---~L~s~s~Dg-----------------~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l 410 (686)
+...+..++|+|++ +++..+.+. .+..+|..+.+....+.-...+..+.|+| +++++
T Consensus 114 --~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~sp-dGk~a 190 (441)
T d1qnia2 114 --NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADY-TGKYA 190 (441)
T ss_dssp --TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECS-SSSEE
T ss_pred --CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEECC-CCCEE
Confidence 33455667777766 333333221 24568888888777777556678899999 88888
Q ss_pred EEEEcC-----------------------------------------CcEEEEecCCCcEEEEeccCCcEEEEEEccCCC
Q 005646 411 ISGSID-----------------------------------------GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ 449 (686)
Q Consensus 411 ~sgs~D-----------------------------------------g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~ 449 (686)
++.+.+ +.+.|++.....++.++........+.++|||+
T Consensus 191 ~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGk 270 (441)
T d1qnia2 191 TSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGK 270 (441)
T ss_dssp EEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSC
T ss_pred EEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCC
Confidence 877644 334444444445555555555677899999999
Q ss_pred EEEE-EecCCcEEEEeCCCCeee------eeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC-----
Q 005646 450 GGIV-GSMMGDCRFYNVSDNHLE------LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP----- 517 (686)
Q Consensus 450 ~l~~-gs~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~----- 517 (686)
++++ +..+++|.+||+.+.... ....+..+ ....-.....+|.+ ++..+.+.+.|++|..|++.
T Consensus 271 yl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~---~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~ 346 (441)
T d1qnia2 271 YFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAE---PELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKH 346 (441)
T ss_dssp EEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEEC---CBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHH
T ss_pred EEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEee---cccccCcccceecC-CceEEEcccccceEEEeccchhhhh
Confidence 8765 567999999998642211 11111111 01112245568988 77888888899999999842
Q ss_pred -------------------------cceeEcCCCCEEEEEeC
Q 005646 518 -------------------------NVIGKYKDGKHIVSAGE 534 (686)
Q Consensus 518 -------------------------~~~~~~~dg~~l~sgs~ 534 (686)
....++|||+||++++.
T Consensus 347 ~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 347 YNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp HTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred hccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence 11346679999999954
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.19 E-value=2e-10 Score=118.76 Aligned_cols=246 Identities=5% Similarity=-0.116 Sum_probs=142.6
Q ss_pred eeeecCCCccc----------eeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe-CCCcEE
Q 005646 207 ERVRLNEEDAM----------FCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-DDGVVR 275 (686)
Q Consensus 207 ~~~s~~~~~l~----------~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~ 275 (686)
..+++++..++ .|..++.|.+||..........................++|+|||++|+++. .++.+.
T Consensus 70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~ 149 (368)
T d1mdah_ 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAA 149 (368)
T ss_dssp EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEE
T ss_pred ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEE
Confidence 45566665544 4567889999987654321110000000001112234689999999998876 579999
Q ss_pred EEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCC
Q 005646 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (686)
Q Consensus 276 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 355 (686)
+||+.+++....+..+..... .+. .....+....++......+......... .....+..+..
T Consensus 150 ~~d~~~~~~~~~~~~~~~~~~----~~~--~~~~~v~~~~Dg~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 212 (368)
T d1mdah_ 150 GLSVPGASDDQLTKSASCFHI----HPG--AAATHYLGSCPASLAASDLAAAPAAAGI-----------VGAQCTGAQNC 212 (368)
T ss_dssp EEEETTTEEEEEEECSSCCCC----EEE--ETTEEECCCCTTSCEEEECCSSCCCCEE-----------CCCCSCTTSCB
T ss_pred EEECCCCcEeEEeeccCcceE----ccC--CCceEEEEcCCCCEEEEEecCCceeeee-----------eeccccccccc
Confidence 999999998887766543211 111 1111122222222222222111111110 01112233455
Q ss_pred CeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-------------CCCCeEEEEEeecCCCEEEEEEcC-----
Q 005646 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-------------HSNYVTCVHFNPVDDNYFISGSID----- 416 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-------------h~~~V~~v~fsp~~~~~l~sgs~D----- 416 (686)
.+....+.+++ .+.+. .+.+.++++..+....... .......++++| ++..++....+
T Consensus 213 ~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~v~~~~~~~~~ 289 (368)
T d1mdah_ 213 SSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSC 289 (368)
T ss_dssp CSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCT
T ss_pred ceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC-CCCEEEEEecCCCcee
Confidence 55667777777 33332 4556666665554332221 112234578888 66666554332
Q ss_pred ----CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCE--EEEEecCCcEEEEeCCCCeeee
Q 005646 417 ----GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG--GIVGSMMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 417 ----g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~--l~~gs~dg~i~iwd~~~~~~~~ 472 (686)
..|++||..+++.+....+...+.+++|+|||+. ++++..++.|++||..+++.+.
T Consensus 290 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~ 351 (368)
T d1mdah_ 290 LAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp TSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred ecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence 3599999999998877777788999999999973 4566778999999999988654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.15 E-value=7e-10 Score=118.55 Aligned_cols=149 Identities=10% Similarity=0.117 Sum_probs=112.9
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEE
Q 005646 255 TMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVV 334 (686)
Q Consensus 255 ~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (686)
.+.|.++++++.. .|+.|.+||+.+++....+..
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~-------------------------------------------- 54 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLEN-------------------------------------------- 54 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECT--------------------------------------------
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEch--------------------------------------------
Confidence 4779999988875 578899999999875432221
Q ss_pred eCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC---------CCcEEEEECCCCeeeeEeeCCCCeEEEEEee
Q 005646 335 FPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI---------DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNP 404 (686)
Q Consensus 335 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~---------Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp 404 (686)
..+..|...|.++.||||+ +|+.++. ++.+.|||+.+++......+...+..+.|+|
T Consensus 55 -------------~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SP 121 (470)
T d2bgra1 55 -------------STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSP 121 (470)
T ss_dssp -------------TTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECS
T ss_pred -------------hhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCcccccccccc
Confidence 1234577889999999999 7777653 5678999999998766556999999999999
Q ss_pred cCCCEEEEEEcCCcEEEEecCCCcEEEEecc-------------------CCcEEEEEEccCCCEEEEEecCCc-EEEEe
Q 005646 405 VDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-------------------RQIVTAVCYRPDGQGGIVGSMMGD-CRFYN 464 (686)
Q Consensus 405 ~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-------------------~~~V~~v~~spdg~~l~~gs~dg~-i~iwd 464 (686)
|+++||... ++.+++|+..+++....... ......+.|+|||+.|+....|.+ +..|.
T Consensus 122 -DG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~ 199 (470)
T d2bgra1 122 -VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE 199 (470)
T ss_dssp -STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred -CcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEE
Confidence 999999864 78999999998876543321 123456889999999999876544 44443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.12 E-value=8.6e-10 Score=117.86 Aligned_cols=146 Identities=12% Similarity=0.166 Sum_probs=105.4
Q ss_pred eecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC---------CCcEEEEEe
Q 005646 209 VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD---------DGVVRLWQV 279 (686)
Q Consensus 209 ~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---------Dg~I~vWd~ 279 (686)
+..+++++. ..++.+.+|+....... .+.....+..|...|.++.|||||++||.++. ++.+.|||+
T Consensus 24 W~~d~~~~~--~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~ 99 (470)
T d2bgra1 24 WISDHEYLY--KQENNILVFNAEYGNSS--VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (470)
T ss_dssp ECSSSEEEE--ESSSCEEEEETTTCCEE--EEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred eCCCCEEEE--EcCCcEEEEECCCCCEE--EEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence 334444433 45778999998876542 34445678889999999999999999998853 456778888
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.+++ +..+..|...+..
T Consensus 100 ~~~~---------------------------------------------------------------~~~l~~~~~~~~~ 116 (470)
T d2bgra1 100 NKRQ---------------------------------------------------------------LITEERIPNNTQW 116 (470)
T ss_dssp TTTE---------------------------------------------------------------ECCSSCCCTTEEE
T ss_pred CCCc---------------------------------------------------------------ccccccCCccccc
Confidence 7765 2234457788999
Q ss_pred EEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-------------------CCCCeEEEEEeecCCCEEEEEEcCCc-
Q 005646 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-------------------HSNYVTCVHFNPVDDNYFISGSIDGK- 418 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-------------------h~~~V~~v~fsp~~~~~l~sgs~Dg~- 418 (686)
..|||+| .||.. .++.+.+|+..+++..+... ..+....+.|+| |+++|+....|.+
T Consensus 117 ~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~~d~~~ 194 (470)
T d2bgra1 117 VTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTE 194 (470)
T ss_dssp EEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTT
T ss_pred cccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC-CCCccceeEecCCc
Confidence 9999999 77764 57789999999887665432 123346688999 9999999876643
Q ss_pred EEEEe
Q 005646 419 VRIWA 423 (686)
Q Consensus 419 V~iwd 423 (686)
|..|.
T Consensus 195 v~~~~ 199 (470)
T d2bgra1 195 VPLIE 199 (470)
T ss_dssp CCEEE
T ss_pred CceEE
Confidence 44443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.04 E-value=2.2e-09 Score=111.63 Aligned_cols=237 Identities=14% Similarity=0.073 Sum_probs=152.7
Q ss_pred EEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccC
Q 005646 265 LASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILE 344 (686)
Q Consensus 265 Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (686)
++|++.+|.|+||++.+++.+..+.......... ...+......+. . .
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g------------~g~~~es~~vl~---~-----------------~ 61 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATG------------WGITNESKEILG---G-----------------D 61 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTC------------TTTSHHHHHHHC---S-----------------S
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEE------------EEECCccceEEe---c-----------------c
Confidence 6788899999999999999888775421111100 000000000000 0 0
Q ss_pred CCeEEeccCCCCeeEEEeeCCC-EEE-EEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCC--EEEEEEcCC-
Q 005646 345 KPLHEFHGHSGEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDN--YFISGSIDG- 417 (686)
Q Consensus 345 ~~~~~l~~h~~~V~~l~~s~~~-~L~-s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~--~l~sgs~Dg- 417 (686)
.....-..|..........||| +|+ +...+..|.++|+.++++...+. +...+..++|+| +++ |++..+.+.
T Consensus 62 ~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v 140 (441)
T d1qnia2 62 QQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVI 140 (441)
T ss_dssp SCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCE
T ss_pred cccccCcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcc
Confidence 0011122355555666678999 664 44578899999999999887665 778899999999 777 444444332
Q ss_pred ----------------cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCC-----------------------
Q 005646 418 ----------------KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG----------------------- 458 (686)
Q Consensus 418 ----------------~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg----------------------- 458 (686)
.+..+|..+.++.........+..+.++|||+++++++.+.
T Consensus 141 ~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p 220 (441)
T d1qnia2 141 PQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE 220 (441)
T ss_dssp ESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHH
T ss_pred cccCcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCcc
Confidence 23558888888876666677788999999999998886542
Q ss_pred ------------------cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCe-EEEEeCCCcEEEEeCCcc
Q 005646 459 ------------------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK-VMVSCADSQVRILQGPNV 519 (686)
Q Consensus 459 ------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~-l~~~s~D~~I~iwd~~~~ 519 (686)
.+.+++....+.... + .-.....++.++| ++++ ++++..+++|.+||..+.
T Consensus 221 ~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~----I-----PvgksPhGv~vSP-DGkyl~~~~~~~~tvsv~d~~k~ 290 (441)
T d1qnia2 221 RIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRY----I-----PVPKNPHGLNTSP-DGKYFIANGKLSPTVSVIAIDKL 290 (441)
T ss_dssp HHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEE----E-----CCBSSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGH
T ss_pred ceEEEecCCCEEEeCCCCcEEEEcccCCceEEE----E-----eCCCCccCceECC-CCCEEEEeCCcCCcEEEEEeehh
Confidence 222222222111110 0 0113356799999 5555 456778999999996432
Q ss_pred --------------------------eeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 520 --------------------------IGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 520 --------------------------~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
.+|.++|..+.|...|++|..|++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 291 DDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp HHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred hhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence 2577788889999999999999985
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.95 E-value=8.3e-08 Score=98.57 Aligned_cols=162 Identities=9% Similarity=0.067 Sum_probs=99.2
Q ss_pred CCeeEEEeeCCC-EEEEEEC-CCcEEEEECCCCeeee---Ee---eCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecC
Q 005646 355 GEILDLSWSKNN-YLLSASI-DKTVRLWRVGNDHCLR---VF---PHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVL 425 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s~-Dg~V~iWd~~~~~~~~---~~---~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~ 425 (686)
..+.++.|+|+| +|+++.. ...|.+|+......+. .. ........++|+| +++++++.. .+++|.+|++.
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEec
Confidence 347899999999 6776654 4578888765432221 11 1456789999999 888775555 67899999997
Q ss_pred CCcEEEEec--------------------cCCcEEEEEEccCCCEEEEEec------CCcEEEEeCCCCeeeeeeeEEee
Q 005646 426 SCHVVDWVD--------------------IRQIVTAVCYRPDGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVH 479 (686)
Q Consensus 426 ~~~~~~~~~--------------------~~~~V~~v~~spdg~~l~~gs~------dg~i~iwd~~~~~~~~~~~~~~~ 479 (686)
......... .......+.++|||++|+++.. .+.|..|++......... ....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~-~~~~ 302 (365)
T d1jofa_ 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ-LFLS 302 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE-EEEE
T ss_pred CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeE-eEee
Confidence 654321110 1123567899999999988743 223777776543221111 1111
Q ss_pred ccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEe-CCCcEEEEeCCCC
Q 005646 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAG-EDSNVYMWNCIGH 546 (686)
Q Consensus 480 ~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs-~Dg~V~iWd~~~~ 546 (686)
..........+++++|. +|++|+++. .++.|.||+++..
T Consensus 303 -~~~~~G~~p~~i~~~p~---------------------------~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 303 -PTPTSGGHSNAVSPCPW---------------------------SDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp -ECSSCCTTCCCEEECTT---------------------------CTTEEEEECSSSCEEEEEEEETT
T ss_pred -EEEcCCCCccEEEecCC---------------------------CCCEEEEEeCCCCeEEEEEEeCC
Confidence 11122344566777763 566665553 5677888877553
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.77 E-value=9.3e-07 Score=87.84 Aligned_cols=192 Identities=11% Similarity=0.101 Sum_probs=131.7
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCce
Q 005646 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (686)
.+..++++|||+++++...+++|..|+.....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~------------------------------------------------ 60 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ------------------------------------------------ 60 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCE------------------------------------------------
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE------------------------------------------------
Confidence 47789999999999999889988777643221
Q ss_pred EEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCC--eee--eEeeCCCCeEEEEEeecC
Q 005646 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND--HCL--RVFPHSNYVTCVHFNPVD 406 (686)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~--~~~--~~~~h~~~V~~v~fsp~~ 406 (686)
..+......+.+++|.++| ++++...++.+.+|+.... ... .........+.+++.+ +
T Consensus 61 ----------------~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~-~ 123 (302)
T d2p4oa1 61 ----------------QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-D 123 (302)
T ss_dssp ----------------EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-S
T ss_pred ----------------EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEcc-C
Confidence 1122244678899999999 7777778888888876533 222 2223567789999999 8
Q ss_pred CCEEEEEEcCCcEEEEecCCCcEEEEecc-----------CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeee
Q 005646 407 DNYFISGSIDGKVRIWAVLSCHVVDWVDI-----------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE 475 (686)
Q Consensus 407 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-----------~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~ 475 (686)
++++++-+.++.+..+|..++....+... ......+.+.. +..+++.+..+.|+.+++..........
T Consensus 124 g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 202 (302)
T d2p4oa1 124 TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPE 202 (302)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCE
T ss_pred CCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccc
Confidence 99999888899999999887764432211 12345666653 3355566778889989887654332222
Q ss_pred EEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 476 ~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
.... .....+++|.+ ++.++++...+++|..++.
T Consensus 203 ~~~~------~~~pdgia~d~-dG~l~va~~~~~~V~~i~p 236 (302)
T d2p4oa1 203 IFVE------QTNIDDFAFDV-EGNLYGATHIYNSVVRIAP 236 (302)
T ss_dssp EEEE------SCCCSSEEEBT-TCCEEEECBTTCCEEEECT
T ss_pred cccC------CCCCcceEECC-CCCEEEEEcCCCcEEEECC
Confidence 2111 13466799999 6777777778888888864
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.72 E-value=1.3e-06 Score=86.86 Aligned_cols=187 Identities=8% Similarity=-0.024 Sum_probs=134.0
Q ss_pred CeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC--cEEEE
Q 005646 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC--HVVDW 432 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~--~~~~~ 432 (686)
.+..+++.|+| ++++...+++|..|+.. ++..........+.+++|.| +++++++...++.+..|+.... .....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccceeec
Confidence 57899999999 77788889999888865 34444445778899999999 9999999998999988887543 22222
Q ss_pred e--ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE--eeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 433 V--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC--VHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 433 ~--~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
. ........+++.++|+++++.+.++.+..++...+.......-. .............++.+.. ..++++.+..
T Consensus 107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~ 184 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEK 184 (302)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTT
T ss_pred cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecCCC
Confidence 2 33456889999999999998888999999998876543211100 0001112233456676654 4566777788
Q ss_pred CcEEEEeCC-----------------cceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 509 SQVRILQGP-----------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 509 ~~I~iwd~~-----------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
+.|..++.. ..+++.++|+++++...++.|..++...+
T Consensus 185 ~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~ 239 (302)
T d2p4oa1 185 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS 239 (302)
T ss_dssp TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred CeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence 888887632 24778889998888888899999887653
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.68 E-value=3.7e-06 Score=81.25 Aligned_cols=161 Identities=11% Similarity=0.018 Sum_probs=96.2
Q ss_pred EeccCCCCeeEEEeeCCC-EEEEEE-CCCcEE--EEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCc--EEEE
Q 005646 349 EFHGHSGEILDLSWSKNN-YLLSAS-IDKTVR--LWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGK--VRIW 422 (686)
Q Consensus 349 ~l~~h~~~V~~l~~s~~~-~L~s~s-~Dg~V~--iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~--V~iw 422 (686)
.+..+.+......|+|++ .|+... .++... .+.....................+++.....+++...+|. |.+.
T Consensus 77 ~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~ 156 (269)
T d2hqsa1 77 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 156 (269)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeee
Confidence 334567788899999999 555444 343333 3333334444444455556666777733344455555554 5556
Q ss_pred ecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCC-c--EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 423 AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG-D--CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 423 d~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg-~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
++..+................|+|+|+.++..+.++ . +.+++...+.... ...........|+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~----------~~~~~~~~~p~~SP--- 223 (269)
T d2hqsa1 157 NINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV----------LSSTFLDETPSLAP--- 223 (269)
T ss_dssp ETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE----------CCCSSSCEEEEECT---
T ss_pred ecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccceE----------eecCccccceEECC---
Confidence 666666655666667778889999999988876654 3 4455554443221 11223456667888
Q ss_pred CeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeC---CCcEEEEeCCCCC
Q 005646 500 SKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGE---DSNVYMWNCIGHE 547 (686)
Q Consensus 500 ~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~---Dg~V~iWd~~~~~ 547 (686)
||++|+-.+. ...|++|+++++.
T Consensus 224 -------------------------DG~~i~f~s~~~~~~~l~~~~~dg~~ 249 (269)
T d2hqsa1 224 -------------------------NGTMVIYSSSQGMGSVLNLVSTDGRF 249 (269)
T ss_dssp -------------------------TSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred -------------------------CCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 6666654332 3468889987754
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.64 E-value=1.4e-05 Score=78.10 Aligned_cols=227 Identities=9% Similarity=0.086 Sum_probs=148.6
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCce
Q 005646 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (686)
....|+++++|+++++-...+.|++||.+ ++.+..+......
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~------------------------------------- 65 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR------------------------------------- 65 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS-------------------------------------
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCC-------------------------------------
Confidence 46899999999988777777889999854 4433333211000
Q ss_pred EEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEE-EEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecC
Q 005646 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLL-SASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVD 406 (686)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~-s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~ 406 (686)
.+....-..+++.++. .++ ..+.++.|.+++. .+.....+. .......+++.+ +
T Consensus 66 -------------------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~-~ 124 (279)
T d1q7fa_ 66 -------------------DSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDN-K 124 (279)
T ss_dssp -------------------TTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECT-T
T ss_pred -------------------cccccccccccccccccccceeccCCccccccccc-cccceeecCCCcccccceecccc-C
Confidence 0111122344444443 333 3334556777765 455555554 556788999998 8
Q ss_pred CCEEEEEEcCCcEEEEecCCCcEEEEe---ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecccc
Q 005646 407 DNYFISGSIDGKVRIWAVLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (686)
Q Consensus 407 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~---~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 483 (686)
++++++....+.+.+++... +.+... .+......+++.++|+.+++....+.|++||.....+.. + . ..
T Consensus 125 G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~---~---g-~~ 196 (279)
T d1q7fa_ 125 GRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQ---I---G-GE 196 (279)
T ss_dssp SCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEE---E---S-CT
T ss_pred CcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeeccccceeeeecCCceeee---e---c-cc
Confidence 88888888788888888654 444433 234567889999999998888889999999987543321 1 1 12
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeC-CCcEEEEeCC----------------cceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 484 APCKRITGFQFLPQDSSKVMVSCA-DSQVRILQGP----------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s~-D~~I~iwd~~----------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.......+|++.+ +++++++-.. +..|.+++.. ..+++.+||++++ ++.++.|++|.....
T Consensus 197 g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 197 GITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL 274 (279)
T ss_dssp TTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred ccccCCccccccc-CCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence 3445688999999 6676666544 4568887632 2366778987655 457899999998765
Q ss_pred C
Q 005646 547 E 547 (686)
Q Consensus 547 ~ 547 (686)
.
T Consensus 275 ~ 275 (279)
T d1q7fa_ 275 A 275 (279)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.64 E-value=2e-06 Score=83.31 Aligned_cols=173 Identities=12% Similarity=0.018 Sum_probs=117.2
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE-ec
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW-VD 434 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~-~~ 434 (686)
...+++.+++ ++++....+.+++++-.+...+..........+|++.+ +++++++-..+..+..++......... ..
T Consensus 59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 137 (260)
T d1rwia_ 59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFT 137 (260)
T ss_dssp CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCC
T ss_pred ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccc-cceeEeeccccccccccccccceeeeeeec
Confidence 4678888988 55555555666666655555554444556789999999 888888777777788887765543322 12
Q ss_pred cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iw 514 (686)
.......+++.|+|+.+++...++.|..++......... .........++++.+ ++.++++....+.|..+
T Consensus 138 ~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~--------~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~ 208 (260)
T d1rwia_ 138 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--------PFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKL 208 (260)
T ss_dssp SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--------CCSSCCSEEEEEECT-TCCEEEEETTTTEEEEE
T ss_pred ccCCcceeeecCCCCEeeeccccccccccccccceeeee--------eccccCCCccceeee-eeeeeeeecCCCEEEEE
Confidence 234457899999999888888889999999876543221 112335578999998 67787777788888888
Q ss_pred eCCc---------------ceeEcCCCCEEEEEeCCCcEE
Q 005646 515 QGPN---------------VIGKYKDGKHIVSAGEDSNVY 539 (686)
Q Consensus 515 d~~~---------------~~~~~~dg~~l~sgs~Dg~V~ 539 (686)
+... .+++.++|.++++-..++.|+
T Consensus 209 ~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~ 248 (260)
T d1rwia_ 209 LAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 248 (260)
T ss_dssp CTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred eCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEE
Confidence 7432 355555666665555555444
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.58 E-value=2.1e-05 Score=78.14 Aligned_cols=188 Identities=9% Similarity=0.070 Sum_probs=120.5
Q ss_pred CeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CC----CCeEEEEEeecCCCEEEEEEc--------------
Q 005646 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HS----NYVTCVHFNPVDDNYFISGSI-------------- 415 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~----~~V~~v~fsp~~~~~l~sgs~-------------- 415 (686)
.-..++|.+++ .|+++.....|...+........... .. ...+.+++.| ++++.++-..
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~ 150 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQE 150 (314)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSS
T ss_pred cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceecc
Confidence 34689999998 78888877888888887654332222 11 2367899999 8888887432
Q ss_pred -CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCC-----EEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCe
Q 005646 416 -DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ-----GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (686)
Q Consensus 416 -Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~-----~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I 489 (686)
+|.|..++. .++.......-...+.++|+|++. ++++-+..+.|+.||+.........+... ..........
T Consensus 151 ~~G~v~~~~~-dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~-~~~~~~~~~p 228 (314)
T d1pjxa_ 151 KFGSIYCFTT-DGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG-HIPGTHEGGA 228 (314)
T ss_dssp SCEEEEEECT-TSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE-ECCCCSSCEE
T ss_pred CCceEEEEee-cCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEE-Eccccccccc
Confidence 234544443 344444333334457899999875 44555678889999876433222211111 1111222346
Q ss_pred EEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------cceeEcCCCC-EEEEEeCCCcEEEEeCCCCC
Q 005646 490 TGFQFLPQDSSKVMVSCADSQVRILQGP---------------NVIGKYKDGK-HIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 490 ~~l~fsp~~~~~l~~~s~D~~I~iwd~~---------------~~~~~~~dg~-~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.++++.+ ++++.++....+.|.+||.. +.++|.+|++ +++|.+..|.|+..++....
T Consensus 229 dGiavD~-~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 229 DGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred eeeEEec-CCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence 7899998 77888888888999999843 2367888887 45666777888888876543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.56 E-value=3.4e-05 Score=76.83 Aligned_cols=201 Identities=9% Similarity=0.042 Sum_probs=122.9
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCce
Q 005646 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (686)
.+-.++|.++|++.++-...+.|..|+..+++..
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~---------------------------------------------- 74 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK---------------------------------------------- 74 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE----------------------------------------------
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEE----------------------------------------------
Confidence 4568999999997777777888887776554311
Q ss_pred EEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC----CCcEEEEECCCCeeeeEee---CCCCeEEEEEe
Q 005646 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI----DKTVRLWRVGNDHCLRVFP---HSNYVTCVHFN 403 (686)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~----Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fs 403 (686)
..+.........|+++++| ++++... .+.|...+........... -....+.+++.
T Consensus 75 ----------------~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d 138 (319)
T d2dg1a1 75 ----------------RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD 138 (319)
T ss_dssp ----------------EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC
T ss_pred ----------------EEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEE
Confidence 1111233456789999999 4444332 2334555555554444333 23457889999
Q ss_pred ecCCCEEEEEEc------CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEE-EecCCcEEEEeCCCCeeeeeeeE
Q 005646 404 PVDDNYFISGSI------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV-GSMMGDCRFYNVSDNHLELDAEI 476 (686)
Q Consensus 404 p~~~~~l~sgs~------Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~-gs~dg~i~iwd~~~~~~~~~~~~ 476 (686)
| +++++++... .+.+..++.....+......-...+.++|+||++.|++ -+..+.|+.|++...........
T Consensus 139 ~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~ 217 (319)
T d2dg1a1 139 S-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG 217 (319)
T ss_dssp T-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE
T ss_pred e-ccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceecccc
Confidence 9 8887776432 13455566555544443333345678999999986654 46688999999864322111111
Q ss_pred EeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 477 ~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
..............++++.+ ++++.++....+.|.+++.
T Consensus 218 ~~~~~~~~~~~~PdGl~vD~-~G~l~Va~~~~g~V~~~~p 256 (319)
T d2dg1a1 218 ATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNK 256 (319)
T ss_dssp EEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECT
T ss_pred ceeeeccCCccceeeeeEcC-CCCEEEEEcCCCEEEEECC
Confidence 11111111123367899998 7788888888899999874
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=1.7e-05 Score=76.42 Aligned_cols=210 Identities=11% Similarity=0.095 Sum_probs=126.5
Q ss_pred eeeecCCCccceeeccc---eEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC-CCcEEEEEeecC
Q 005646 207 ERVRLNEEDAMFCSKVQ---RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVED 282 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~---~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~vWd~~~~ 282 (686)
-++++||+.+|...... .+.+.+...... ..+..+.+.+....|+|+|+.|+.... ++...++.....
T Consensus 44 P~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~ 115 (269)
T d2hqsa1 44 PAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 115 (269)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCE--------EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred eEECCCCCEEEEEEeeccCcceeeeecccCce--------eEEeeeecccccceecCCCCeeeEeeecCCccceeecccc
Confidence 36899999888654333 344444333221 235567888999999999998887654 333333332221
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
.. .......+........+
T Consensus 116 ~~-------------------------------------------------------------~~~~~~~~~~~~~~~~~ 134 (269)
T d2hqsa1 116 SG-------------------------------------------------------------QIRQVTDGRSNNTEPTW 134 (269)
T ss_dssp TC-------------------------------------------------------------CEEECCCCSSCEEEEEE
T ss_pred cc-------------------------------------------------------------cceeeeecccccccccc
Confidence 10 11111223334445556
Q ss_pred eCCC--EEEEEECCCc--EEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCC-c--EEEEecCCCcEEEEecc
Q 005646 363 SKNN--YLLSASIDKT--VRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG-K--VRIWAVLSCHVVDWVDI 435 (686)
Q Consensus 363 s~~~--~L~s~s~Dg~--V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg-~--V~iwd~~~~~~~~~~~~ 435 (686)
++++ .+++...++. |.+.++..+.......+........|+| ++..++..+.++ . +.+.+...+.. .....
T Consensus 135 ~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~ 212 (269)
T d2hqsa1 135 FPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSS 212 (269)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCE-EECCC
T ss_pred ccccccceecccccCCceEeeeecccccceeeeccccccccccccc-ccceeEEEeecCCceeeeEeecccccc-eEeec
Confidence 6666 5555555664 4555555555444444667788889999 888777766554 3 44455555544 44445
Q ss_pred CCcEEEEEEccCCCEEEEEecC---CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMM---GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
........|+|||+.|+..+.. ..++++++.+..... .......+...+|+|
T Consensus 213 ~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~---------lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 213 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR---------LPATDGQVKFPAWSP 267 (269)
T ss_dssp SSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE---------CCCSSSEEEEEEECC
T ss_pred CccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---------EeCCCCcEEeEEeCC
Confidence 5566788999999998865543 468899998765432 112234577788988
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.51 E-value=6.9e-06 Score=79.36 Aligned_cols=153 Identities=9% Similarity=-0.025 Sum_probs=105.0
Q ss_pred CCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeE-eeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE
Q 005646 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRV-FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~-~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~ 432 (686)
....++++.+++ ++++-.....+..++......... .........++++| +++++++...++.|..+|.........
T Consensus 98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~~~ 176 (260)
T d1rwia_ 98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVL 176 (260)
T ss_dssp CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTTCCEEEC
T ss_pred eecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecC-CCCEeeeccccccccccccccceeeee
Confidence 345788898888 555544556677776654332221 12335568899999 889988888889999999886655443
Q ss_pred e-ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 433 V-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 433 ~-~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
. ..-.....|++.++|+++++....+.|..++......... .........+|++.+ ++.++++-..+++|
T Consensus 177 ~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~--------~~~~~~~P~~i~~d~-~g~l~vad~~~~rI 247 (260)
T d1rwia_ 177 PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL--------PFTGLNTPLAVAVDS-DRTVYVADRGNDRV 247 (260)
T ss_dssp CCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEEC--------CCCSCCCEEEEEECT-TCCEEEEEGGGTEE
T ss_pred eccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEE--------ccCCCCCeEEEEEeC-CCCEEEEECCCCEE
Confidence 2 3345578999999999888887888899888765432211 111234578999998 67777777778888
Q ss_pred EEEeCC
Q 005646 512 RILQGP 517 (686)
Q Consensus 512 ~iwd~~ 517 (686)
+.++..
T Consensus 248 ~~i~~~ 253 (260)
T d1rwia_ 248 VKLTSL 253 (260)
T ss_dssp EEECCC
T ss_pred EEEeCC
Confidence 876643
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.45 E-value=4.1e-05 Score=76.04 Aligned_cols=240 Identities=10% Similarity=0.094 Sum_probs=137.5
Q ss_pred cceeeecCCCccceee-------ccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 005646 205 EGERVRLNEEDAMFCS-------KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~-------~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW 277 (686)
|...+.++|+..++.. .+++|..|+.......... ......-.+.-..|+|.++|+.|+++...+.|...
T Consensus 21 EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~---~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC---KPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE---CCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred eEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEE---CCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence 4455666776544322 2456777765543322111 11111122346789999999988888776777777
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccC-CCC
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH-SGE 356 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~ 356 (686)
+............. .+. -..
T Consensus 98 ~~~g~~~~~~~~~~-----------------------------------------------------------~g~~~~~ 118 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDS-----------------------------------------------------------EGRRMQG 118 (314)
T ss_dssp ETTSCEEECCSBCT-----------------------------------------------------------TSCBCBC
T ss_pred eCCCcEEEEEeccc-----------------------------------------------------------cccccCC
Confidence 76544311100000 000 012
Q ss_pred eeEEEeeCCC-EEEEEEC---------------CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCC-----EEEEEEc
Q 005646 357 ILDLSWSKNN-YLLSASI---------------DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDN-----YFISGSI 415 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~---------------Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~-----~l~sgs~ 415 (686)
.+++++.++| +.++-.. .+.|..++. .++.......-...+.++|+| +++ ++++-+.
T Consensus 119 pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~~~~pNGi~~~~-d~d~~~~~lyv~d~~ 196 (314)
T d1pjxa_ 119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTAFQFPNGIAVRH-MNDGRPYQLIVAETP 196 (314)
T ss_dssp CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEEESSEEEEEEEE-CTTSCEEEEEEEETT
T ss_pred CcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCCcceeeeeEECC-CCCcceeEEEEEeec
Confidence 4567777777 3333211 122333332 233333333444567899999 654 5555567
Q ss_pred CCcEEEEecCCCcEEE----Eecc----CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCC
Q 005646 416 DGKVRIWAVLSCHVVD----WVDI----RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (686)
Q Consensus 416 Dg~V~iwd~~~~~~~~----~~~~----~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 487 (686)
.+.|+.||+.....+. +... ....-.+++.++|+..++....+.|.+||..++...... . .+..
T Consensus 197 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i--~------~p~~ 268 (314)
T d1pjxa_ 197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI--R------CPFE 268 (314)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE--E------CSSS
T ss_pred ccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEE--E------CCCC
Confidence 8889999876433221 1111 223568999999998888778899999998876543211 1 1235
Q ss_pred CeEEEEEeCCCCC-eEEEEeCCCcEEEEeCC
Q 005646 488 RITGFQFLPQDSS-KVMVSCADSQVRILQGP 517 (686)
Q Consensus 488 ~I~~l~fsp~~~~-~l~~~s~D~~I~iwd~~ 517 (686)
..++++|.| +++ ++++.+.+++|..++..
T Consensus 269 ~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 269 KPSNLHFKP-QTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CEEEEEECT-TSSEEEEEETTTTEEEEEECS
T ss_pred CEEEEEEeC-CCCEEEEEECCCCcEEEEECC
Confidence 689999999 555 55666677888888854
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.44 E-value=0.00011 Score=71.43 Aligned_cols=153 Identities=15% Similarity=0.164 Sum_probs=106.9
Q ss_pred CCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE
Q 005646 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
......+++.+++ ++++....+.+.+++. .++.+..+. +......+++.+ +++++++....+.|++||... +.
T Consensus 113 ~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~-~g~i~v~d~~~~~V~~~d~~G-~~ 189 (279)
T d1q7fa_ 113 LQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEG-QY 189 (279)
T ss_dssp CSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTC-CE
T ss_pred ccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeecc-ceeEEeeeccccceeeeecCC-ce
Confidence 3456678888888 5556566677888875 455666664 667788999998 888888888899999999754 44
Q ss_pred EEEec---cCCcEEEEEEccCCCEEEEEec-CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE
Q 005646 430 VDWVD---IRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (686)
Q Consensus 430 ~~~~~---~~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~ 505 (686)
+..+. .......|++.|+|+.+++-.. ++.|.+|+.. +++..... . ........++++.| ++. |+++
T Consensus 190 ~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~--~----~~~~~~p~~vav~~-dG~-l~V~ 260 (279)
T d1q7fa_ 190 LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALE--S----KVKHAQCFDVALMD-DGS-VVLA 260 (279)
T ss_dssp EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEE--E----SSCCSCEEEEEEET-TTE-EEEE
T ss_pred eeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEEEEe--C----CCCCCCEeEEEEeC-CCc-EEEE
Confidence 44443 2345789999999997776544 4569999854 44432211 1 11224578999999 555 5566
Q ss_pred eCCCcEEEEeCCc
Q 005646 506 CADSQVRILQGPN 518 (686)
Q Consensus 506 s~D~~I~iwd~~~ 518 (686)
..+.+|++|....
T Consensus 261 ~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 261 SKDYRLYIYRYVQ 273 (279)
T ss_dssp ETTTEEEEEECSC
T ss_pred eCCCeEEEEEeee
Confidence 7899999998654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.33 E-value=0.00014 Score=72.19 Aligned_cols=145 Identities=10% Similarity=0.119 Sum_probs=89.7
Q ss_pred CeeEEEeeCCCEEEEEECC-------CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEE-EEEEcCCcEEEEecCCC
Q 005646 356 EILDLSWSKNNYLLSASID-------KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF-ISGSIDGKVRIWAVLSC 427 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~D-------g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l-~sgs~Dg~V~iwd~~~~ 427 (686)
...++++.++|.|..+... +.+..++...+........-...+.|+|+| +++.| ++-+..++|+.||+...
T Consensus 131 ~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~-dg~~lyvad~~~~~I~~~d~~~~ 209 (319)
T d2dg1a1 131 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALST-DEKVLWVTETTANRLHRIALEDD 209 (319)
T ss_dssp CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTT
T ss_pred CCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeecc-ccceEEEecccCCceEEEEEcCC
Confidence 4567888898844444332 234444444333333333344568899999 87755 55566789999998642
Q ss_pred -cEE--------EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC
Q 005646 428 -HVV--------DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (686)
Q Consensus 428 -~~~--------~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~ 498 (686)
... .........-.+++.++|++.++....+.|.+||.. +++.. .+.+......+...+++++|.+ +
T Consensus 210 g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~-G~~l~--~i~~P~~~~~~~~~~~~~~~~~-~ 285 (319)
T d2dg1a1 210 GVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIG--QILIPGRDEGHMLRSTHPQFIP-G 285 (319)
T ss_dssp SSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEE--EEECTTGGGTCSCBCCEEEECT-T
T ss_pred CceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC-CcEEE--EEeCCCcCCCcCceeeeEEEeC-C
Confidence 111 111122346789999999988888889999999964 55433 2333333344556788999988 3
Q ss_pred CCeEEEE
Q 005646 499 SSKVMVS 505 (686)
Q Consensus 499 ~~~l~~~ 505 (686)
...++++
T Consensus 286 ~~~~~~t 292 (319)
T d2dg1a1 286 TNQLIIC 292 (319)
T ss_dssp SCEEEEE
T ss_pred CCEEEEE
Confidence 3444333
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.21 E-value=4.6e-05 Score=77.37 Aligned_cols=118 Identities=12% Similarity=0.127 Sum_probs=78.6
Q ss_pred CCCeeEEEeeCCC-EE-EEEECCCcEEEEECCCCeeeeEee--------------------CCCCeEEEEEeecCCCEEE
Q 005646 354 SGEILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFP--------------------HSNYVTCVHFNPVDDNYFI 411 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L-~s~s~Dg~V~iWd~~~~~~~~~~~--------------------h~~~V~~v~fsp~~~~~l~ 411 (686)
......++|+|++ ++ ++.-.+++|.+|++..++...... +......+.++| ++++|+
T Consensus 192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~ly 270 (365)
T d1jofa_ 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMF 270 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEE
T ss_pred CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEE
Confidence 3467889999999 55 455578999999997664322111 112356789999 999988
Q ss_pred EEEc-C-----CcEEEEecCCCcEE-E---E---eccCCcEEEEEEcc-CCCEEEEEe-cCCcEEEEeCCCCeeee
Q 005646 412 SGSI-D-----GKVRIWAVLSCHVV-D---W---VDIRQIVTAVCYRP-DGQGGIVGS-MMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 412 sgs~-D-----g~V~iwd~~~~~~~-~---~---~~~~~~V~~v~~sp-dg~~l~~gs-~dg~i~iwd~~~~~~~~ 472 (686)
++.. + +.|..|++.....+ . . ........+++++| +|++|+++. .++.|.+|+++...+..
T Consensus 271 vsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~ 346 (365)
T d1jofa_ 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHR 346 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEE
T ss_pred EEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcE
Confidence 8753 2 23777777543222 1 1 11233467799998 899887764 57899999987665433
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.13 E-value=0.00054 Score=66.91 Aligned_cols=159 Identities=14% Similarity=0.047 Sum_probs=102.8
Q ss_pred CCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-----CCCCeEEEEEeecCCCEEEEEEcC----CcEEEEecC
Q 005646 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSID----GKVRIWAVL 425 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-----h~~~V~~v~fsp~~~~~l~sgs~D----g~V~iwd~~ 425 (686)
..+.++++.+++.|+.++.+ -|.++|..+++...... ....++.+.+.| ++++.++.... +.-.+|.+.
T Consensus 59 ~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~ 136 (295)
T d2ghsa1 59 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA 136 (295)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeec
Confidence 45778888888855556655 58899999887654433 223578899999 88877765432 345677777
Q ss_pred CCcEEEEeccCCcEEEEEEccCCCEEEE-EecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 426 SCHVVDWVDIRQIVTAVCYRPDGQGGIV-GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 426 ~~~~~~~~~~~~~V~~v~~spdg~~l~~-gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
.++.......-...+.++|+++++.++. -+..+.|+.|++.........+...............++++.. ++.+.++
T Consensus 137 ~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva 215 (295)
T d2ghsa1 137 KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNA 215 (295)
T ss_dssp TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEE
T ss_pred CCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC-CCCEEee
Confidence 7776655554556788999999986654 4567889999875432211111011111112234577888877 6666666
Q ss_pred EeCCCcEEEEeC
Q 005646 505 SCADSQVRILQG 516 (686)
Q Consensus 505 ~s~D~~I~iwd~ 516 (686)
.-..+.|..||.
T Consensus 216 ~~~~g~V~~~dp 227 (295)
T d2ghsa1 216 RWGEGAVDRYDT 227 (295)
T ss_dssp EETTTEEEEECT
T ss_pred eeCCCceEEecC
Confidence 666777877774
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=0.00075 Score=70.48 Aligned_cols=197 Identities=11% Similarity=0.130 Sum_probs=113.6
Q ss_pred eecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe---------CCCcEEEEEe
Q 005646 209 VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG---------DDGVVRLWQV 279 (686)
Q Consensus 209 ~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs---------~Dg~I~vWd~ 279 (686)
+..++.++ .-..+|.|.+|+....... .+.....+ +.-.+....|||||++|+... ..+.+.++|+
T Consensus 24 W~~~~~~~-~~~~~g~i~~~~~~~~~~~--~l~~~~~~--~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~ 98 (465)
T d1xfda1 24 WISDTEFI-YREQKGTVRLWNVETNTST--VLIEGKKI--ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI 98 (465)
T ss_dssp BSSSSCBC-CCCSSSCEEEBCGGGCCCE--EEECTTTT--TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred EeCCCcEE-EEeCCCcEEEEECCCCCEE--EEEcCccc--cccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEc
Confidence 33444433 3455678888887654432 11222222 223567788999999988764 2456677777
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.++.... +.........+..
T Consensus 99 ~~~~~~~------------------------------------------------------------l~~~~~~~~~l~~ 118 (465)
T d1xfda1 99 PHGDPQS------------------------------------------------------------LDPPEVSNAKLQY 118 (465)
T ss_dssp SSCCCEE------------------------------------------------------------CCCTTCCSCCCSB
T ss_pred cCCceee------------------------------------------------------------ccCccCCccccce
Confidence 6654211 1111122345566
Q ss_pred EEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCe-----------------EEEEEeecCCCEEEEEEcC-Cc
Q 005646 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYV-----------------TCVHFNPVDDNYFISGSID-GK 418 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V-----------------~~v~fsp~~~~~l~sgs~D-g~ 418 (686)
..|||+| .||-.. ++.|.+.+...+..++... ..+.| ..+.|+| |+++|+....| ..
T Consensus 119 ~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s~ 196 (465)
T d1xfda1 119 AGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSR 196 (465)
T ss_dssp CCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTT
T ss_pred eeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC-CCCeEEEEEecccc
Confidence 7899999 666554 6678888877766554443 11112 4678999 99999887643 33
Q ss_pred EE---------------------------------EEecCCCcEEEEe-------ccCCcEEEEEEccCCCEEEEEecC-
Q 005646 419 VR---------------------------------IWAVLSCHVVDWV-------DIRQIVTAVCYRPDGQGGIVGSMM- 457 (686)
Q Consensus 419 V~---------------------------------iwd~~~~~~~~~~-------~~~~~V~~v~~spdg~~l~~gs~d- 457 (686)
|. ++|+.++...... .....+..+.|+|+++.++....-
T Consensus 197 V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~ 276 (465)
T d1xfda1 197 VPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA 276 (465)
T ss_dssp SCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT
T ss_pred cceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccc
Confidence 33 3344333211100 011236789999999866664332
Q ss_pred ---CcEEEEeCCCCeeee
Q 005646 458 ---GDCRFYNVSDNHLEL 472 (686)
Q Consensus 458 ---g~i~iwd~~~~~~~~ 472 (686)
..+.++|..+++...
T Consensus 277 q~~~~i~~~d~~tg~~~~ 294 (465)
T d1xfda1 277 QNVSILTLCDATTGVCTK 294 (465)
T ss_dssp SCEEEEEEEETTTCCEEE
T ss_pred cccceEEEEcCCCCcEEE
Confidence 258889998887653
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.99 E-value=0.00078 Score=65.70 Aligned_cols=207 Identities=14% Similarity=0.114 Sum_probs=127.5
Q ss_pred eccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceE
Q 005646 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (686)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~ 299 (686)
-..++|.-|+.+...... ......+.++++.++|.++++ +.+ -|.++|..+++.........
T Consensus 37 i~~~~I~r~d~~~g~~~~---------~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~------- 98 (295)
T d2ghsa1 37 ILERELHELHLASGRKTV---------HALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELES------- 98 (295)
T ss_dssp GGGTEEEEEETTTTEEEE---------EECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSST-------
T ss_pred CCCCEEEEEECCCCeEEE---------EECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeec-------
Confidence 355677777765543211 112456889999999977765 455 47888888775322111000
Q ss_pred EeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEEC-----C
Q 005646 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASI-----D 374 (686)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~-----D 374 (686)
......++++.+.|+|.|..++. .
T Consensus 99 ---------------------------------------------------~~~~~~~nd~~vd~~G~iw~~~~~~~~~~ 127 (295)
T d2ghsa1 99 ---------------------------------------------------DLPGNRSNDGRMHPSGALWIGTMGRKAET 127 (295)
T ss_dssp ---------------------------------------------------TCTTEEEEEEEECTTSCEEEEEEETTCCT
T ss_pred ---------------------------------------------------CCCcccceeeEECCCCCEEEEeccccccc
Confidence 00122467888889884444432 2
Q ss_pred CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCE-EEEEEcCCcEEEEecCCC------cEE---EEeccCCcEEEEEE
Q 005646 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY-FISGSIDGKVRIWAVLSC------HVV---DWVDIRQIVTAVCY 444 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~-l~sgs~Dg~V~iwd~~~~------~~~---~~~~~~~~V~~v~~ 444 (686)
+.-.+|.+..++....+..-...+.++|+| +++. +++-+..+.|..|++... +.. ...........+++
T Consensus 128 ~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~-d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~v 206 (295)
T d2ghsa1 128 GAGSIYHVAKGKVTKLFADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVC 206 (295)
T ss_dssp TCEEEEEEETTEEEEEEEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEE
T ss_pred cceeEeeecCCcEEEEeeccCCcceeeecC-CCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEE
Confidence 355677777777666665555678899999 6664 556666788999887421 111 12233456788999
Q ss_pred ccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE
Q 005646 445 RPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (686)
Q Consensus 445 spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~ 505 (686)
..+|++.++.-..+.|..||.. +++.... .+ +...+++++|-..+.+.|+++
T Consensus 207 D~~GnlWva~~~~g~V~~~dp~-G~~~~~i--~l------P~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 207 DAEGHIWNARWGEGAVDRYDTD-GNHIARY--EV------PGKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp CTTSCEEEEEETTTEEEEECTT-CCEEEEE--EC------SCSBEEEEEEESTTSCEEEEE
T ss_pred cCCCCEEeeeeCCCceEEecCC-CcEeeEe--cC------CCCceEEEEEeCCCCCEEEEE
Confidence 9999888777778889999965 4443322 22 224589999975344444433
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.96 E-value=0.00035 Score=66.93 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=43.3
Q ss_pred eecC--CCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC-C---C--cEEEEEee
Q 005646 209 VRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-D---G--VVRLWQVV 280 (686)
Q Consensus 209 ~s~~--~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-D---g--~I~vWd~~ 280 (686)
++|+ |+.++..+ ++.|.+.++..... +.|..+.+.+...+|||||++||-... + . .|.+++..
T Consensus 6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~--------~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~ 76 (281)
T d1k32a2 6 LNPDIHGDRIIFVC-CDDLWEHDLKSGST--------RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE 76 (281)
T ss_dssp EEEEEETTEEEEEE-TTEEEEEETTTCCE--------EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT
T ss_pred cCCCCCCCEEEEEe-CCcEEEEECCCCCE--------EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEec
Confidence 4677 88777654 45677777765432 345567788999999999999986532 2 2 25555555
Q ss_pred cCe
Q 005646 281 EDE 283 (686)
Q Consensus 281 ~~~ 283 (686)
+++
T Consensus 77 ~g~ 79 (281)
T d1k32a2 77 NGE 79 (281)
T ss_dssp TTE
T ss_pred CCc
Confidence 554
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.00033 Score=73.27 Aligned_cols=108 Identities=12% Similarity=0.136 Sum_probs=74.5
Q ss_pred CeeEEEeeCCC-EEEEEE---------CCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEE
Q 005646 356 EILDLSWSKNN-YLLSAS---------IDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s---------~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iw 422 (686)
.+....||||+ +|+... ..+.+.++|+.++....... ....+....|+| +++.||-.. ++.|.+.
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSP-DG~~iafv~-~~nl~~~ 139 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIF-ENNIYYC 139 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEE-TTEEEEE
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeecc-CCceEEEEe-cceEEEE
Confidence 45677899999 655543 35678999999887654432 345566789999 998888766 6789998
Q ss_pred ecCCCcEEEEecc--CCc-----------------EEEEEEccCCCEEEEEec-CCcEEEEeC
Q 005646 423 AVLSCHVVDWVDI--RQI-----------------VTAVCYRPDGQGGIVGSM-MGDCRFYNV 465 (686)
Q Consensus 423 d~~~~~~~~~~~~--~~~-----------------V~~v~~spdg~~l~~gs~-dg~i~iwd~ 465 (686)
+..++..+..... ... -.++-|||||++||.... +..|..|.+
T Consensus 140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~ 202 (465)
T d1xfda1 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL 202 (465)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeec
Confidence 8887765543321 111 257789999999998764 344656654
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.41 E-value=0.0032 Score=62.94 Aligned_cols=138 Identities=11% Similarity=-0.041 Sum_probs=84.1
Q ss_pred cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC--------------------------------------C
Q 005646 376 TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID--------------------------------------G 417 (686)
Q Consensus 376 ~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D--------------------------------------g 417 (686)
++.+.|..+.+......-......+.++| +++++++.+.+ +
T Consensus 174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein 252 (459)
T d1fwxa2 174 VFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 252 (459)
T ss_dssp EEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEEEEecCCceEEEEeeeCCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence 35577888877777666555667788888 88888877643 1
Q ss_pred cEEEEecCCC---cEEEEeccCCcEEEEEEccCCCEEEEEec-CCcEEEEeCCCCeeeeeeeEE----eeccccCCCCCe
Q 005646 418 KVRIWAVLSC---HVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEIC----VHSKKKAPCKRI 489 (686)
Q Consensus 418 ~V~iwd~~~~---~~~~~~~~~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~I 489 (686)
.+.+-|.++. ..+.++........+.++|||+++++++. +.++.|+|+..-......... +.. .....-.-
T Consensus 253 gV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~-e~elglgP 331 (459)
T d1fwxa2 253 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA-EPELGLGP 331 (459)
T ss_dssp TEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEE-CCBCCSCE
T ss_pred CceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEe-ecccCcCc
Confidence 2333343321 22233444445667899999999888665 889999998632111100000 000 01112334
Q ss_pred EEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 490 TGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 490 ~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
..-+|.. .+....+-.-|++|.-|++
T Consensus 332 Lht~fd~-~g~aytslfids~v~kw~~ 357 (459)
T d1fwxa2 332 LHTAFDG-RGNAYTSLFLDSQVVKWNI 357 (459)
T ss_dssp EEEEECT-TSEEEEEETTTTEEEEEEH
T ss_pred cccccCC-CceEEEEeeccceEEEEec
Confidence 5567777 5666666678999999985
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.32 E-value=0.0092 Score=59.71 Aligned_cols=152 Identities=9% Similarity=-0.011 Sum_probs=87.7
Q ss_pred CCeeEEEeeCCC-EEEEEECC-CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcC------CcEEEEec
Q 005646 355 GEILDLSWSKNN-YLLSASID-KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID------GKVRIWAV 424 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s~D-g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~D------g~V~iwd~ 424 (686)
......++.+++ +++.|+.+ ..+.+||..+......-. ....-.+++..+ ++++++.|+.+ ..+.+||.
T Consensus 76 ~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~ 154 (387)
T d1k3ia3 76 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSP 154 (387)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred cceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCceeeeccccccccccceeeeecC
Confidence 334456778888 66666554 689999998887643322 223334566666 88999998753 36899999
Q ss_pred CCCcEEEEeccC---------------CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCe
Q 005646 425 LSCHVVDWVDIR---------------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (686)
Q Consensus 425 ~~~~~~~~~~~~---------------~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I 489 (686)
.+.+-....... ..-..+...++|+.++.+...+.+.+++..+.....................-
T Consensus 155 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (387)
T d1k3ia3 155 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG 234 (387)
T ss_dssp TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred CCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccc
Confidence 887543221110 00112334567888888888888888888877654322211111111111112
Q ss_pred EEEEEeCCCCCeEEEEeC
Q 005646 490 TGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 490 ~~l~fsp~~~~~l~~~s~ 507 (686)
.++.+...+++.++.++.
T Consensus 235 ~~~~~~~~~g~v~v~GG~ 252 (387)
T d1k3ia3 235 NAVMYDAVKGKILTFGGS 252 (387)
T ss_dssp EEEEEETTTTEEEEECCB
T ss_pred cEEEeeccCCceEEEEec
Confidence 334444445667777664
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.88 E-value=0.044 Score=54.47 Aligned_cols=186 Identities=16% Similarity=0.170 Sum_probs=113.9
Q ss_pred EEEeeC---CC-EEEEE-ECCCcEEEEECCCCeeeeEe--eCCCCeEEEEEeec-CCCEEEEEEcC--------------
Q 005646 359 DLSWSK---NN-YLLSA-SIDKTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPV-DDNYFISGSID-------------- 416 (686)
Q Consensus 359 ~l~~s~---~~-~L~s~-s~Dg~V~iWd~~~~~~~~~~--~h~~~V~~v~fsp~-~~~~l~sgs~D-------------- 416 (686)
.+++.. || +|+.. ..+..|-+-|+.+.++.+.. .....+..+...+. +..|++.++.+
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 555543 66 55544 47889999999999987654 45667777666431 45677776653
Q ss_pred ----CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCC---------------cEEEEeCCC-------Cee
Q 005646 417 ----GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG---------------DCRFYNVSD-------NHL 470 (686)
Q Consensus 417 ----g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg---------------~i~iwd~~~-------~~~ 470 (686)
+.+..+|..+.++............+.++|||+++++.+.+. .+.+++... ++.
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~ 248 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 248 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence 236788999988876666667778899999999999876432 133444310 000
Q ss_pred eeeeeEEeecccc----------CCCCCeEEEEEeCCCCCeEEE-EeCCCcEEEEeCCcc--------------------
Q 005646 471 ELDAEICVHSKKK----------APCKRITGFQFLPQDSSKVMV-SCADSQVRILQGPNV-------------------- 519 (686)
Q Consensus 471 ~~~~~~~~~~~~~----------~~~~~I~~l~fsp~~~~~l~~-~s~D~~I~iwd~~~~-------------------- 519 (686)
............. .-.....++.++| +++++++ +.-+.++.|+|....
T Consensus 249 ~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSP-DGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el 327 (459)
T d1fwxa2 249 QELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 327 (459)
T ss_dssp EEETTEEEEECSGG--CSSEEEEEEESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred EEeCCceeecccccCCcceeEEEecCCCCCceEECC-CCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence 0000000000000 0012355788999 5555554 446889999986532
Q ss_pred ------eeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 520 ------IGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 520 ------~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
.+|...|.-..|---|.+|--|++..
T Consensus 328 glgPLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CcCccccccCCCceEEEEeeccceEEEEecch
Confidence 23344665555666899999999854
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.15 E-value=0.022 Score=53.49 Aligned_cols=101 Identities=18% Similarity=0.167 Sum_probs=68.7
Q ss_pred EEeecC--CCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEec-C-----CcEEEEeCCCCeeee
Q 005646 401 HFNPVD--DNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-M-----GDCRFYNVSDNHLEL 472 (686)
Q Consensus 401 ~fsp~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~-d-----g~i~iwd~~~~~~~~ 472 (686)
..+| + ++.++-.+ +|.|.+.|+.+++...+......+...+|||||+.||.... + ..|.+++..++....
T Consensus 5 ~~sP-di~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNP-DIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEE-EEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCC-CCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 4578 7 88877665 56799999999998888888888999999999999986543 2 247788887776543
Q ss_pred eeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 473 ~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
..... ..............|+| +++.|+...
T Consensus 83 lt~~~--~~~~~~~~~~~~~~~sp-dg~~l~~~~ 113 (281)
T d1k32a2 83 ITYFS--GKSTGRRMFTDVAGFDP-DGNLIISTD 113 (281)
T ss_dssp CCCCC--EEEETTEECSEEEEECT-TCCEEEEEC
T ss_pred eeecC--CCccCccccccccccCC-CCCEEEEEE
Confidence 21100 00111123356788999 666666543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.86 E-value=0.7 Score=42.87 Aligned_cols=158 Identities=7% Similarity=0.019 Sum_probs=99.6
Q ss_pred cCCCCeeEEEeeCCC-EEE-EEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 352 GHSGEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~-~L~-s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
.+...+..|+|...+ .|+ +-..++.|+..++........+. ....+.+|++....+++..+-...+.|.+.++....
T Consensus 33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~ 112 (263)
T d1npea_ 33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ 112 (263)
T ss_dssp EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence 344567788998765 444 44567889988887665554444 336789999987455555566667899999988665
Q ss_pred EEEEecc-CCcEEEEEEccCCCEEEEEecC-Cc--EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 429 VVDWVDI-RQIVTAVCYRPDGQGGIVGSMM-GD--CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 429 ~~~~~~~-~~~V~~v~~spdg~~l~~gs~d-g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
....... -..+..++++|...+++..... +. |.--++....... +. ........+|++.+.+..+..+
T Consensus 113 ~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~-----i~---~~~~~~P~glaiD~~~~~lYw~ 184 (263)
T d1npea_ 113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI-----LA---QDNLGLPNGLTFDAFSSQLCWV 184 (263)
T ss_dssp CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE-----EE---CTTCSCEEEEEEETTTTEEEEE
T ss_pred EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee-----ee---eecccccceEEEeecCcEEEEE
Confidence 4433332 3568899999977776654332 23 4444554433211 11 1123457899999854444455
Q ss_pred EeCCCcEEEEeCC
Q 005646 505 SCADSQVRILQGP 517 (686)
Q Consensus 505 ~s~D~~I~iwd~~ 517 (686)
-...+.|...+..
T Consensus 185 d~~~~~I~~~~~~ 197 (263)
T d1npea_ 185 DAGTHRAECLNPA 197 (263)
T ss_dssp ETTTTEEEEEETT
T ss_pred eCCCCEEEEEECC
Confidence 5667788877754
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.86 E-value=0.24 Score=48.29 Aligned_cols=106 Identities=13% Similarity=0.159 Sum_probs=65.3
Q ss_pred eCCC--EEEEEE---CCCcEEEEECCCCe--e--eeEee--CCCCeEEEEEeecCCCEEEEEE--c-------------C
Q 005646 363 SKNN--YLLSAS---IDKTVRLWRVGNDH--C--LRVFP--HSNYVTCVHFNPVDDNYFISGS--I-------------D 416 (686)
Q Consensus 363 s~~~--~L~s~s---~Dg~V~iWd~~~~~--~--~~~~~--h~~~V~~v~fsp~~~~~l~sgs--~-------------D 416 (686)
.+++ +|+... ...+|.++++.... . +.++. .....+.|++.. ++.+++|-. . -
T Consensus 107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~ 185 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGL 185 (340)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTC
T ss_pred cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcC
Confidence 3455 555553 35678888875432 2 22233 235688999988 888777731 1 1
Q ss_pred CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCCCCe
Q 005646 417 GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNH 469 (686)
Q Consensus 417 g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~~~~ 469 (686)
++..+|....+........-...+.|+++||+++|+++ +..++|++|++....
T Consensus 186 ~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 186 AWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp CCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 23344444444444333334567899999999887665 457889999987543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.28 E-value=0.15 Score=50.20 Aligned_cols=95 Identities=13% Similarity=0.167 Sum_probs=66.3
Q ss_pred EEEEECCCCeeeeE--ee--CCCCeEEEEEeecCCCEEEEEEcC-CcEEEEecCCCcEEEEeccC--CcEEEEEEccCCC
Q 005646 377 VRLWRVGNDHCLRV--FP--HSNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHVVDWVDIR--QIVTAVCYRPDGQ 449 (686)
Q Consensus 377 V~iWd~~~~~~~~~--~~--h~~~V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~~~~~~~~~--~~V~~v~~spdg~ 449 (686)
+.+||..+++.... .. +.......++.+ ++.+++.|+.+ ..+.+||..+..-....... ..-..++..+||+
T Consensus 54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~ 132 (387)
T d1k3ia3 54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 132 (387)
T ss_dssp EEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred EEEEECCCCcEeecCCCCCCcccceeEEEEec-CCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCc
Confidence 77999998865432 22 444445667777 89999988765 58999999987655433222 2234577788999
Q ss_pred EEEEEecC------CcEEEEeCCCCeeee
Q 005646 450 GGIVGSMM------GDCRFYNVSDNHLEL 472 (686)
Q Consensus 450 ~l~~gs~d------g~i~iwd~~~~~~~~ 472 (686)
.++.|+.+ ..+.+||..++....
T Consensus 133 v~v~GG~~~~~~~~~~v~~yd~~~~~W~~ 161 (387)
T d1k3ia3 133 VFTIGGSWSGGVFEKNGEVYSPSSKTWTS 161 (387)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred eeeeccccccccccceeeeecCCCCceee
Confidence 99998753 358999999887643
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.10 E-value=1.9 Score=44.85 Aligned_cols=58 Identities=9% Similarity=-0.058 Sum_probs=39.5
Q ss_pred CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeee
Q 005646 417 GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDA 474 (686)
Q Consensus 417 g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~ 474 (686)
|.|.-+|+.+++++-......+..+-.+.-.+..+++|+.||.++.||.++++.+...
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~ 501 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEE
Confidence 4577788888887744433333222122334668888999999999999999977644
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.89 E-value=0.47 Score=49.81 Aligned_cols=80 Identities=11% Similarity=0.032 Sum_probs=58.4
Q ss_pred CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEE--EEEEccCCC-E
Q 005646 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT--AVCYRPDGQ-G 450 (686)
Q Consensus 374 Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~--~v~~spdg~-~ 450 (686)
.|.|.-+|+.+++.+..+....++..-.... .+.++++|+.||.++-+|..+++++-.......+. -+.|..+|+ |
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY 543 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCeEEEEcCCCCcEEeecCCCCCCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 3678889999999998887544444333344 67888899999999999999999996555544332 267778885 5
Q ss_pred EEEE
Q 005646 451 GIVG 454 (686)
Q Consensus 451 l~~g 454 (686)
+++.
T Consensus 544 v~i~ 547 (582)
T d1flga_ 544 LGVT 547 (582)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.80 E-value=0.48 Score=49.66 Aligned_cols=79 Identities=6% Similarity=-0.096 Sum_probs=57.3
Q ss_pred CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEE--EEEccCCC-EE
Q 005646 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTA--VCYRPDGQ-GG 451 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~--v~~spdg~-~l 451 (686)
|.|.-+|+.+++.+....+..+..+-...- .+.++++|+.||.++-+|.++++.+-.......+.+ +.|..||+ |+
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi 522 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcceeEe-cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence 578899999999988877544433322333 577888899999999999999999966665554433 66777886 45
Q ss_pred EEE
Q 005646 452 IVG 454 (686)
Q Consensus 452 ~~g 454 (686)
++.
T Consensus 523 ~v~ 525 (571)
T d2ad6a1 523 GSM 525 (571)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=94.66 E-value=0.79 Score=47.74 Aligned_cols=80 Identities=9% Similarity=0.123 Sum_probs=58.1
Q ss_pred CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEE--EEEccCCC-EE
Q 005646 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTA--VCYRPDGQ-GG 451 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~--v~~spdg~-~l 451 (686)
|.|.-||+.+++.+..+....+...-.+.- .+.+++.|+.||.++-+|..+++.+-.......+.+ +.|..+|+ +|
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv 516 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV 516 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence 578889999999998887555444333343 678888999999999999999999965555443332 56667886 55
Q ss_pred EEEe
Q 005646 452 IVGS 455 (686)
Q Consensus 452 ~~gs 455 (686)
++..
T Consensus 517 ~v~a 520 (560)
T d1kv9a2 517 AIMA 520 (560)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.62 E-value=1.8 Score=40.38 Aligned_cols=200 Identities=10% Similarity=0.142 Sum_probs=117.8
Q ss_pred EEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeC
Q 005646 257 KFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFP 336 (686)
Q Consensus 257 ~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (686)
-.+|..+.||--+ ..++.|+|+++.++++....+
T Consensus 69 IMhP~~~IiALra-g~~LQiFnletK~klks~~~~--------------------------------------------- 102 (327)
T d1utca2 69 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT--------------------------------------------- 102 (327)
T ss_dssp EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---------------------------------------------
T ss_pred hcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC---------------------------------------------
Confidence 3567777777665 468999999988866554432
Q ss_pred CccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCC-CeeeeEee-C----CCCeEEEEEeecCCCEE
Q 005646 337 PKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGN-DHCLRVFP-H----SNYVTCVHFNPVDDNYF 410 (686)
Q Consensus 337 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~-~~~~~~~~-h----~~~V~~v~fsp~~~~~l 410 (686)
.+|.--.|-.+..|+..+ +..|.-|+++. ..+.+.|. | ...|..-..++ +.+++
T Consensus 103 ------------------e~VvfWkWis~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~-~~kW~ 162 (327)
T d1utca2 103 ------------------DDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWL 162 (327)
T ss_dssp ------------------SCCCEEEESSSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSCEE
T ss_pred ------------------CCcEEEEecCCCEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECC-CCCEE
Confidence 345555666666555444 45788999853 24666665 2 35666667777 67776
Q ss_pred EEEEc-------CCcEEEEecCCCcEEEEeccCCcEEEEEEccCC---CEEEE---EecCCcEEEEeCCCCe---eee-e
Q 005646 411 ISGSI-------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDG---QGGIV---GSMMGDCRFYNVSDNH---LEL-D 473 (686)
Q Consensus 411 ~sgs~-------Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg---~~l~~---gs~dg~i~iwd~~~~~---~~~-~ 473 (686)
+..+. .|.+.+|....+......+|-..-..+.+.-+. +.++. +...++++|-++.... ... .
T Consensus 163 ~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~k 242 (327)
T d1utca2 163 LLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK 242 (327)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCC
T ss_pred EEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcc
Confidence 65442 478999999877655444443322222221110 12222 2234688998886522 111 2
Q ss_pred eeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEc
Q 005646 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY 523 (686)
Q Consensus 474 ~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~ 523 (686)
....+.-.......-..+++.++ .-..+..-+.-|.|.+||..+..+.+
T Consensus 243 k~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDleTgt~i~ 291 (327)
T d1utca2 243 KAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIY 291 (327)
T ss_dssp EEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred eeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEcccccEEE
Confidence 22222222233445566788887 55677777788888888887765544
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=94.39 E-value=2.4 Score=44.28 Aligned_cols=59 Identities=12% Similarity=0.047 Sum_probs=42.0
Q ss_pred CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeee
Q 005646 417 GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE 475 (686)
Q Consensus 417 g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~ 475 (686)
|.|.-||+.+++++-...+..++..-.++-.|..+++|+.||.++.||..+++.+....
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~ 511 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence 56788888888876444334333333334467788889999999999999999876443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=94.04 E-value=1.3 Score=46.06 Aligned_cols=79 Identities=15% Similarity=0.118 Sum_probs=56.5
Q ss_pred CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEE--EEEccCCC-EE
Q 005646 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTA--VCYRPDGQ-GG 451 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~--v~~spdg~-~l 451 (686)
|.|.-||+.+++.+..+.+..+...=...- .+.++++|+.||.++.+|..+++.+-.+.....+.+ +.|..+|+ ||
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv 535 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence 568889999999998887544433222333 678899999999999999999999965555443332 56667886 44
Q ss_pred EEE
Q 005646 452 IVG 454 (686)
Q Consensus 452 ~~g 454 (686)
++.
T Consensus 536 ~v~ 538 (573)
T d1kb0a2 536 SVA 538 (573)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=93.75 E-value=4.5 Score=41.65 Aligned_cols=108 Identities=13% Similarity=0.119 Sum_probs=74.1
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEee--CCCC-----------------------------------eEEEEEeecCCCE
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFP--HSNY-----------------------------------VTCVHFNPVDDNY 409 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~-----------------------------------V~~v~fsp~~~~~ 409 (686)
.++.++.+|.+.++|..+++.+.... .... -...+++| +..+
T Consensus 316 ~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~ 394 (560)
T d1kv9a2 316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-GTGL 394 (560)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-TTTE
T ss_pred eeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccC-CCCe
Confidence 56778899999999999998876543 1100 01346677 5555
Q ss_pred EEEEEc------------------------------------CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEE
Q 005646 410 FISGSI------------------------------------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV 453 (686)
Q Consensus 410 l~sgs~------------------------------------Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~ 453 (686)
++.... .|.|.-||+.+++++-......+...-.+.-.|.++++
T Consensus 395 ~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~ 474 (560)
T d1kv9a2 395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ 474 (560)
T ss_dssp EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE
T ss_pred eecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEE
Confidence 554432 25678889999988855554444433333445678889
Q ss_pred EecCCcEEEEeCCCCeeeeeee
Q 005646 454 GSMMGDCRFYNVSDNHLELDAE 475 (686)
Q Consensus 454 gs~dg~i~iwd~~~~~~~~~~~ 475 (686)
|+.||.++.||..+++.+....
T Consensus 475 G~~dg~l~A~Da~tGe~LW~~~ 496 (560)
T d1kv9a2 475 GTAAGQMHAYSADKGEALWQFE 496 (560)
T ss_dssp ECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCCCcEEEEECCCCcEeEEEE
Confidence 9999999999999999876443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=93.29 E-value=3.7 Score=39.35 Aligned_cols=91 Identities=7% Similarity=0.096 Sum_probs=60.5
Q ss_pred cEEEEECCC-CeeeeEee--------CCCCeEEEEE--eecCCC-EEEEEEcCCcEEEEecC---CC----cEEEEeccC
Q 005646 376 TVRLWRVGN-DHCLRVFP--------HSNYVTCVHF--NPVDDN-YFISGSIDGKVRIWAVL---SC----HVVDWVDIR 436 (686)
Q Consensus 376 ~V~iWd~~~-~~~~~~~~--------h~~~V~~v~f--sp~~~~-~l~sgs~Dg~V~iwd~~---~~----~~~~~~~~~ 436 (686)
+|.+|.+.. ...+..+. ....+..+|+ +|.++. ++++...+|.+..|.+. .+ +.+..+...
T Consensus 100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~ 179 (353)
T d1h6la_ 100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN 179 (353)
T ss_dssp EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS
T ss_pred eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC
Confidence 577787752 22333332 1124566666 664454 46666778999888763 23 244566777
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEeCC
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd~~ 466 (686)
..+..+.+.+..+.|+++-.+..|+.|+..
T Consensus 180 ~q~EGCVvDde~~~LyisEE~~Giw~~~a~ 209 (353)
T d1h6la_ 180 SQTEGMAADDEYGSLYIAEEDEAIWKFSAE 209 (353)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred CccceEEEeCCCCcEEEecCccceEEEEec
Confidence 889999999999999999888777777664
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.61 E-value=3.7 Score=37.55 Aligned_cols=226 Identities=5% Similarity=-0.109 Sum_probs=114.9
Q ss_pred ccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEE-eCCCcEEEEEeecCeeeeeeccCCCCCcceE
Q 005646 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASA-GDDGVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (686)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~ 299 (686)
..+.|+-.+++.... ........+..+...|.+|+|.+..+.|.-. ..++.|+..++........+...-..
T Consensus 8 ~~~~I~~~~ld~~~~--~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~----- 80 (263)
T d1npea_ 8 QTGKIERLPLERNTM--KKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS----- 80 (263)
T ss_dssp EEEEEEEEEESSSCB--CGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC-----
T ss_pred CCCeEEEEECCCccc--cccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccc-----
Confidence 344555555543322 1112222344455678899999877766655 45577888777655433222211111
Q ss_pred EeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe-ccCCCCeeEEEeeCCC-EEEEEE-CCCc
Q 005646 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF-HGHSGEILDLSWSKNN-YLLSAS-IDKT 376 (686)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~~~-~L~s~s-~Dg~ 376 (686)
...+.++.......+.-. ....+...+.. +.....+ .........|++.|.+ +|+-.. ..+.
T Consensus 81 --------p~~iAvD~~~~~lY~~d~--~~~~I~~~~~d-----g~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~ 145 (263)
T d1npea_ 81 --------PEGIALDHLGRTIFWTDS--QLDRIEVAKMD-----GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDN 145 (263)
T ss_dssp --------EEEEEEETTTTEEEEEET--TTTEEEEEETT-----SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSS
T ss_pred --------ccEEEEeccCCeEEEecc--CCCEEEEEecC-----CceEEEEecccccCCcEEEEecccCcEEEeecCCCC
Confidence 222233322222222111 11111111111 1111222 2233567899999876 554332 2234
Q ss_pred EEEE--ECCCCeeeeEee-CCCCeEEEEEeecCCCEE-EEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEE
Q 005646 377 VRLW--RVGNDHCLRVFP-HSNYVTCVHFNPVDDNYF-ISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI 452 (686)
Q Consensus 377 V~iW--d~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~ 452 (686)
.+|| ++.......... .-...+.|++.+ ..+.| .+-...++|...|+................+|++. ++....
T Consensus 146 ~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~-~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~-~~~lYw 223 (263)
T d1npea_ 146 PKIETSHMDGTNRRILAQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYY 223 (263)
T ss_dssp CEEEEEETTSCCCEEEECTTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEE
T ss_pred cEEEEecCCCCCceeeeeecccccceEEEee-cCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE-CCEEEE
Confidence 3454 454433333333 335678999998 55555 44456788999999776554433332334677775 333444
Q ss_pred EEecCCcEEEEeCCCCee
Q 005646 453 VGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 453 ~gs~dg~i~iwd~~~~~~ 470 (686)
+-...+.|...|..+++.
T Consensus 224 td~~~~~I~~~~~~~g~~ 241 (263)
T d1npea_ 224 TDWKTNSVIAMDLAISKE 241 (263)
T ss_dssp EETTTTEEEEEETTTTEE
T ss_pred EECCCCEEEEEECCCCcc
Confidence 444668888888887764
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=92.32 E-value=0.71 Score=48.52 Aligned_cols=79 Identities=9% Similarity=0.007 Sum_probs=57.1
Q ss_pred CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEE--EEEEccCCC-EE
Q 005646 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT--AVCYRPDGQ-GG 451 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~--~v~~spdg~-~l 451 (686)
|.|.-||+.+++.+....+..++..-.+.. .+.+++.|+.||.++-+|..+++.+-.+.....+. -+.|..||+ ||
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv 531 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV 531 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceEEEEeCCCCceecccCCCCCCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence 678999999999988877555544434444 67888899999999999999999996555443322 255666886 45
Q ss_pred EEE
Q 005646 452 IVG 454 (686)
Q Consensus 452 ~~g 454 (686)
++.
T Consensus 532 av~ 534 (596)
T d1w6sa_ 532 AIY 534 (596)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.66 E-value=4.8 Score=36.76 Aligned_cols=156 Identities=8% Similarity=-0.004 Sum_probs=92.4
Q ss_pred CCCCeeEEEeeCCC-EEE-EEECCCcEEEEECCCCe----eeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 353 HSGEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDH----CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 353 h~~~V~~l~~s~~~-~L~-s~s~Dg~V~iWd~~~~~----~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
....+..++|.+.. .|+ +=...+.|.--++.... ....+. ....+..|++.+..+++..+-...++|.+.++.
T Consensus 28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~ 107 (266)
T d1ijqa1 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 107 (266)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence 44567789998766 444 43456667766665322 112222 335678899988566666666677889999998
Q ss_pred CCcEEE-EeccCCcEEEEEEccCCCEEEEEe--cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE
Q 005646 426 SCHVVD-WVDIRQIVTAVCYRPDGQGGIVGS--MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (686)
Q Consensus 426 ~~~~~~-~~~~~~~V~~v~~spdg~~l~~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l 502 (686)
...... ..........++++|...+|.... ..+.|.-.++....... +. .......+++++.+....+.
T Consensus 108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~-----l~---~~~~~~p~gl~iD~~~~~lY 179 (266)
T d1ijqa1 108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-----LV---TENIQWPNGITLDLLSGRLY 179 (266)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE-----EE---CSSCSCEEEEEEETTTTEEE
T ss_pred CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec-----cc---ccccceeeEEEeeccccEEE
Confidence 776543 333345688999999665665543 33457667776543221 11 11224578899988443344
Q ss_pred EEEeCCCcEEEEeC
Q 005646 503 MVSCADSQVRILQG 516 (686)
Q Consensus 503 ~~~s~D~~I~iwd~ 516 (686)
.+-...+.|...+.
T Consensus 180 w~d~~~~~I~~~~~ 193 (266)
T d1ijqa1 180 WVDSKLHSISSIDV 193 (266)
T ss_dssp EEETTTTEEEEEET
T ss_pred EecCCcCEEEEEEC
Confidence 44455556665553
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.73 E-value=6.4 Score=36.49 Aligned_cols=87 Identities=10% Similarity=0.154 Sum_probs=60.9
Q ss_pred CcEEEEECCCCe----e--eeE----ee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc-CCcEE
Q 005646 375 KTVRLWRVGNDH----C--LRV----FP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-RQIVT 440 (686)
Q Consensus 375 g~V~iWd~~~~~----~--~~~----~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-~~~V~ 440 (686)
+.++|-++.... . .+. +. ..+...+++.++ ....++.-+.-|.|.+||+.++.++..... .+.|.
T Consensus 223 ~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF 301 (327)
T d1utca2 223 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 301 (327)
T ss_dssp EEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred cEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceE
Confidence 678888876521 1 111 11 356778899998 888999999999999999999999866654 45566
Q ss_pred EEEEccCCCEEEEEecCCcEEE
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRF 462 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~i 462 (686)
..+-..+...+++-..+|.|.-
T Consensus 302 ~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 302 VTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp EEEEETTTTEEEEEETTSEEEE
T ss_pred EeccCCCCceEEEECCCCeEEE
Confidence 5555555556666667776643
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.58 E-value=6.1 Score=36.01 Aligned_cols=115 Identities=10% Similarity=-0.002 Sum_probs=75.5
Q ss_pred CCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecCCCcEE
Q 005646 355 GEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCHVV 430 (686)
Q Consensus 355 ~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~~~~~ 430 (686)
..+..|++.+.+ +.++-...+.|.+.++........+. .......++++|..+.++.+-. ..+.|.-.++......
T Consensus 77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~ 156 (266)
T d1ijqa1 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 156 (266)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence 345567776544 44555667889999998776555444 5567899999994444444432 3346766777655444
Q ss_pred EEec-cCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCCCCe
Q 005646 431 DWVD-IRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNH 469 (686)
Q Consensus 431 ~~~~-~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~~~~ 469 (686)
.+.. .-...+.+++.+.++.|..+ ...+.|...++.+..
T Consensus 157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~ 197 (266)
T d1ijqa1 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 197 (266)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence 4433 23557899999987766665 556788888886543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=89.51 E-value=2.4 Score=44.01 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=40.1
Q ss_pred cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeee
Q 005646 418 KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE 475 (686)
Q Consensus 418 ~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~ 475 (686)
.|.-||+.+++++-......+...-..+-.|..+++|+.||.++.||..+++.+....
T Consensus 458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~ 515 (573)
T d1kb0a2 458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (573)
T ss_dssp EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence 4667788888777444333332222233467788899999999999999999876443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.12 E-value=4.6 Score=41.74 Aligned_cols=59 Identities=15% Similarity=0.038 Sum_probs=43.3
Q ss_pred CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeee
Q 005646 417 GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE 475 (686)
Q Consensus 417 g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~ 475 (686)
|.|.-+|+.+++++-......++..-.++..|..+++|+.||.++.||..+++.+....
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~ 524 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence 56778888888887444444444333344567788899999999999999999876543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.00 E-value=13 Score=36.29 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=27.5
Q ss_pred cCCceEEEEEeeCCCEEEEE-----eCCCcEEEEEeecCeeee
Q 005646 249 HDGSILTMKFSPDGQYLASA-----GDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasg-----s~Dg~I~vWd~~~~~~~~ 286 (686)
+.-.+...++|||+++||-+ ++-..|++.|+.+++.+.
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~ 165 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP 165 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecc
Confidence 44455677889999998853 223479999999998654
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=87.69 E-value=7.5 Score=38.56 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=27.7
Q ss_pred CCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
-..-++|+|.|||++|++--..|.|++++..++..
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~ 60 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV 60 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE
Confidence 45678999999999888764578999888766653
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.79 E-value=16 Score=35.06 Aligned_cols=94 Identities=7% Similarity=0.028 Sum_probs=62.7
Q ss_pred CeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE--
Q 005646 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW-- 432 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~-- 432 (686)
.|..++|+.+. |+.. .++.+..++...-....... -..++..+.++| ..++....+|.+-++++.++.....
T Consensus 88 ~v~~vafs~d~-l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~ 162 (381)
T d1xipa_ 88 DVIFVCFHGDQ-VLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQ 162 (381)
T ss_dssp TEEEEEEETTE-EEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEeeCCE-EEEE-eCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccC
Confidence 57888997553 3333 45567778876644433333 456778888766 5677888899999999988764322
Q ss_pred ----eccCCcEEEEEEccCCCEEEEE
Q 005646 433 ----VDIRQIVTAVCYRPDGQGGIVG 454 (686)
Q Consensus 433 ----~~~~~~V~~v~~spdg~~l~~g 454 (686)
......+.+++|++.|+.++++
T Consensus 163 ~v~~~~~~~~~~~v~ws~kgkq~v~~ 188 (381)
T d1xipa_ 163 NVTSFDVTNSQLAVLLKDRSFQSFAW 188 (381)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred CcceEEecCCceEEEEeCCcEEEEEe
Confidence 1234557777777777777666
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=80.75 E-value=7.3 Score=38.68 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=40.2
Q ss_pred CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec---------cCCcEEEEEEccC
Q 005646 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---------IRQIVTAVCYRPD 447 (686)
Q Consensus 394 ~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~---------~~~~V~~v~~spd 447 (686)
-...++|+|.| ++++|++--..|+|++++..++....... .......|+|+|+
T Consensus 26 L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 45778999999 89888876557999999988876554332 2345788999995
|