Citrus Sinensis ID: 005662

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-----
Protein Sequence
MASSPSSSPPPSISAPTTPHKRSFTNSHNFLRVKRPSYPHPPPFPALCRCSAPSSADNNNNSSFNRRWDLVIQDAFKNAVKLFDSFLKEYGAPQDDAVLEEEKRDESGEDEWDWDRWKSHFDEVDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDAALLRDNAGAGLENGGIDIGNLVKEIGPYYRNGSGGFCWKKHFMACYYKEQLATAAAGVPLFEIFLTVNKKGEYQQQAVYLKRKGVFDDSSVVSSKASGGTGRLNPPGSTEDKDDLLVVSAEDTEDGDESDDSSDLAEGLSGFQNILRDMIPGVRVKVLKVTAPGKVDRDFISKVIEQIMEEEDEEKDAEVENVESEDEDKDESDEERNEIEMDAGRGIIENEEEQTEVSVKVVVGGLVQKLPGNKPAKEFLRVPAKLEKKGRLSFSFSIEKDSKRRDSGAKDLGSVDNKARLGSQRSIENVMLDLAKFIGREKIPLKVLKDLSELINLSLSQAQNHQPLSGSTTFHRIETATSQDALNGLYIGVHGLRTSEVINLRRKFGQWQDDGGIKNPSNLEFYEYVEAIKVTGDPYVPAGQVAFRAKVGKRYQLPHKGIIPEEFGVIARYKGQGRLAEPGFQNPRWVDGELVILDGKYIKGGPVVGFVYWAPEYHFLVFFNRLRLQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEccccccEEEEEccHHHHHHHcccccEEEEEEEEcccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHHcccccccEEEEEEEccccccccHHHHHHHHHHHHcccccHHHHccccccccccccccHHHHHHHHHccccccccccccccccHHEEEEccccccccccccccccccccHHHHHcccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEcccccccEEEEEEEccccccccccccccccccccEEEEEEEEcccccccccEEEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEEcccccccccEEEEEEEEEcccEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccEEEEEEEccccccEEEccccHHHHHcccccccEEEEEEEEcccccEEEEEEEEEccccccccccccccccccccccccccccccccccEEcccccccccccccccccHHcccHHHHHHHcccccccEEEEEEEEccccccHHHHHHHHHHHHHcccccccccHccccccccccccccccHcccccHccccccccccccccEEEEEEEccccccccccccccccEEEccEEccccccEEEEEEccccccccccccccccHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEEcccccccccEEEEEcccccccEEEEEEEccccccccccccccccEEEEEEEEEEEEcccccccccEEEEEEEEcccccccccccccHHccEEEEEccccEEcccccccccccccEEEEEcccEcccccEEEEEEEcccccEEEEEccEccc
Coil and Loop (DISEMBL)
masspssspppsisapttphkrsftnshnflrvkrpsyphpppfpalcrcsapssadnnnnssfnrRWDLVIQDAFKNAVKLFDSFLkeygapqddavleeekrdesgedewdwdrwkshfdevdDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDAALLRdnagaglenggidigNLVKeigpyyrngsggfcwkkHFMACYYKEQLATAAAGVPLFEIFLTVNKKGEYQQQAVYLKrkgvfddssvvsskasggtgrlnppgstedkddllvvsaedtedgdesddssdlaEGLSGFQNILRDMIPGVRVKVLkvtapgkvdRDFISKVIEQIMEEedeekdaevenvesededkdesdeERNEIEMDagrgiieneeeqtEVSVKVVVGGLvqklpgnkpakeflrvpaklekkgrlsfsfsiekdskrrdsgakdlgsvdnkarlgsqRSIENVMLDLAKFigrekiplKVLKDLSELINLSLsqaqnhqplsgsttfhrieTATSQDALNGLYIGVHGLRTSEVINLRRKfgqwqddggiknpsnleFYEYVEAIKvtgdpyvpagqVAFRAKVgkryqlphkgiipeeFGVIARykgqgrlaepgfqnprwvdgelvildgkyikggpvvgfvywapeyhFLVFFNRLRLQ
Flexible Loop (DISEMBL)
masspssspppsisapttphkrsfTNSHNFLRVKRPSYPHPPPFPALCRCSAPSSADNNNNSSFNRRWDLVIQDAFKNAVKLFDSFLKEygapqddavleeekrdesgedewdwdrwKSHFDEVDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDAALLRdnagaglenggiDIGNLVKEIGPYYRNGSGGFCWKKHFMACYYKEQLATAAAGVPLFEIFLTVNKKGEYQQQAVYLkrkgvfddssvvsskasggtgrlnppgstedkddLLVVSAEDTedgdesddssdlAEGLSGFQNILRDMIPGVRVKVLkvtapgkvdrdfISKVIEQImeeedeekdaevenvesededkdesdeernEIEMdagrgiieneeeqtevSVKVVVGGlvqklpgnkpakeflrvpaklekkgrlsfsfsiekdskrrdsgakdlgsvdnkarlgsqrsieNVMLDLAKFIGREKIPLKVLKDLSELINLSLSQAQNHQPLSGSTTFHRIETATSQDALNGLYIGVHGLRTSEVINLRRKfgqwqddggiknpSNLEFYEYVEAIKVTGDPYVPAGQVAFRAKVgkryqlphkgiipeeFGVIARYKGQGrlaepgfqnprwVDGELVILDGKYIKGGPVVGFVYWAPEYHFLVFFNRLRLQ
Low Complexity Region (SEG)
MasspssspppsisapttpHKRSFTNSHNFLRVKRPSYPHPPPFPALCRCsapssadnnnnssfnRRWDLVIQDAFKNAVKLFDSFLKEYGAPQDDAVLeeekrdesgedeWDWDRWKSHFDEVDDQERLVSILKSQLGNAVFKEEYDDaarlkvaiaaaaTNDAVGRVMSNLNRAVVQERYEDAALLRDNAGAGLENGGIDIGNLVKEIGPYYRNGSGGFCWKKHFMACYYKEQLATAAAGVPLFEIFLTVNKKGEYQQQAVYLKRKGVFDDSSVVSSKASGGTGRLNPPGSTEDKDDLLVVsaedtedgdesddssdlaeglsGFQNILRDMIPGVRVKVLKVTAPGKVDRDFISKVIeqimeeedeekdaevenvesededkdesdeerneIEMDAGRGIIENeeeqtevsvkvvvgglvqklPGNKPAKEFLRVPAKLEKKGRLSFSFSIEKDSKRRDSGAKDLGSVDNKARLGSQRSIENVMLDLAKFIGREKIPLKVLKDLSELINLSLSQAQNHQPLSGSTTFHRIETATSQDALNGLYIGVHGLRTSEVINLRRKFGQWQDDGGIKNPSNLEFYEYVEAIKVTGDPYVPAGQVAFRAKVGKRYQLPHKGIIPEEFGVIARYKGQGRLAEPGFQNPRWVDGELVILDGKYIKGGPVVGFVYWAPEYHFLVFFNRLRLQ
Disordered region (IsUnstruct)
***************************************************************FNRRWDLVIQDAFKNAVKLFDSFLKEYG********************WDWDRWKSHFDEVDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDAALLRDNAGAGLENGGIDIGNLVKEIGPYYRNGSGGFCWKKHFMACYYKEQLATAAAGVPLFEIFLTVNKKGEYQQQAVYLKRKGVF*****************************************************SGFQNILRDMIPGVRVKVLKVTAPGKVDRDFISKVIE***************************************************VSVKVVVGGLVQKL********************************************************IENVMLDLAKFIGREKIPLKVLKDLSELINLSL**************FHRIETATSQDALNGLYIGVHGLRTSEVINLRRKFGQWQDDGGIKNPSNLEFYEYVEAIKVTGDPYVPAGQVAFRAKVGKRYQLPHKGIIPEEFGVIARYKGQGRLAEPGFQNPRWVDGELVILDGKYIKGGPVVGFVYWAPEYHFLVFFNRL***
Disordered Region (DISOPRED)
*******************************************F*ALCR**********************IQDAFKNAVK********************************WDRWKSHFDEVDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDAALLRDNAGAGLENGGIDIGNLVKEIGPYYRNGSGGFCWKKHFMACYYKEQLATAAAGVPLFEIFLTVNKKGEYQQQAVY**************************************************************FQNILRDMIPGVRVKVLKVTAPGKVDRDF*********************************************************VSVKVVVGG*************************RLSF*************************************LDLAKFI******************************SGSTTFHRIETATSQDALNGLYIGVHGLRTSEVINLRRKFGQ***********NLEFYEYVEAIKVTGDPYVPAGQVAFRAKVGKRYQLPHKGIIPEEFGVIARYKGQGRLAEPGFQNPRWVDGELVILDGKYIKGGPVVGFVYWAPEYHFLVFFNRLRL*
Disordered Region (DISEMBL)
*******************HKRSFTNSHNFLRVKRPSYPHPPPFPALCRCSAPSSADNNNNSSFNRRWDLVIQDAFKNAVKLFDSFLKEYGAPQDDA**************WDWDRWKSHFDEVDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDAALLRDNAGAGLENGGIDIGNLVKEIGPYYRNGSGGFCWKKHFMACYYKEQLATAAAGVPLFEIFLTVNKKGEYQQQAVYLKRKGVFD*********************TEDKDDLLVVS****************AEGLSGFQNILRDMIPGVRVKVLKVTAPGKVDRDFISKVIEQIME****************************EIEMDAGRGIIENEEEQTEVSVKVVVGGLVQKLPGNKPAKEFLRVPAKLEKKGRLSFSFSIE************LGSVDNKARLGSQRSIENVMLDLAKFIGREKIPLKVLKDLSELINLSLSQAQNHQPLSGSTTFHRIETATSQDALNGLYIGVHGLRTSEVINLRRKFGQWQDDGGIKNPSNLEFYEYVEAIKVTGDPYVPAGQVAFRAKVGKRYQLPHKGIIPEEFGVIARYKGQGRLAEPGFQNPRWVDGELVILDGKYIKGGPVVGFVYWAPEYHFLVFFNRLRLQ
Disordered Region (DISPRO)
***************************HNFL*VKRPSYPHPPPFPALCRCSA************NRRWDLVIQDAFKNAVKLFDSFLKEYG*******************EWDWDRWKSHFDEVDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDAALLRDNAGAGLENGGIDIGNLVKEIGPYYRNGSGGFCWKKHFMACYYKEQLATAAAGVPLFEIFLTVNKKGEYQQQAVYLKRK*****************************************************EGLSGFQNILRDMIPGVRVKVLKVTAPGKVDRDFISKVIEQIMEE********************************************TEVSVKVVVGGLVQKLPGNKPAKEFLRVPAKLEKKGRLSFSFSIEKD************************SIENVMLDLAKFIGREKIPLKVLKDLSELINLSLSQAQNHQPLSGSTTFHRIETATSQDALNGLYIGVHGLRTSEVINLRRKFGQWQDDGGIKNPSNLEFYEYVEAIKVTGDPYVPAGQVAFRAKVGKRYQLPHKGIIPEEFGVIARYKGQGRLAEPGFQNPRWVDGELVILDGKYIKGGPVVGFVYWAPEYHFLVFFNRLRL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSPSSSPPPSISAPTTPHKRSFTNSHNFLRVKRPSYPHPPPFPALCRCSAPSSADNNNNSSFNRRWDLVIQDAFKNAVKLFDSFLKEYGAPQDDAVLEEEKRDESGEDEWDWDRWKSHFDEVDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDAALLRDNAGAGLENGGIDIGNLVKEIGPYYRNGSGGFCWKKHFMACYYKEQLATAAAGVPLFEIFLTVNKKGEYQQQAVYLKRKGVFDDSSVVSSKASGGTGRLNPPGSTEDKDDLLVVSAEDTEDGDESDDSSDLAEGLSGFQNILRDMIPGVRVKVLKVTAPGKVDRDFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGRGIIENEEEQTEVSVKVVVGGLVQKLPGNKPAKEFLRVPAKLEKKGRLSFSFSIEKDSKRRDSGAKDLGSVDNKARLGSQRSIENVMLDLAKFIGREKIPLKVLKDLSELINLSLSQAQNHQPLSGSTTFHRIETATSQDALNGLYIGVHGLRTSEVINLRRKFGQWQDDGGIKNPSNLEFYEYVEAIKVTGDPYVPAGQVAFRAKVGKRYQLPHKGIIPEEFGVIARYKGQGRLAEPGFQNPRWVDGELVILDGKYIKGGPVVGFVYWAPEYHFLVFFNRLRLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	685	2.2.26 [Sep-21-2011]
Q93YW0	684	Protein EXECUTER 1, chlor	yes	no	0.988	0.989	0.559	0.0

>sp|Q93YW0|EXEC1_ARATH Protein EXECUTER 1, chloroplastic OS=Arabidopsis thaliana GN=EX1 PE=1 SV=1

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/686 (55%), Positives = 487/686 (70%), Gaps = 9/686 (1%)

Query: 5   PSSSPPPSISAPTTPHKRSFTNSHNFLRVKRPSYPHPPPFP-ALCRCSAPSSADNNNNSS 63
           PS S PPS +   +P   S T+S      KR  YPH  P P ALCRCS+ S ++++++SS
Sbjct: 2   PSLSTPPSQNLAFSPAA-SATSSRLTPSSKRSFYPHRLPDPTALCRCSSSSGSNSSSSSS 60

Query: 64  F--NRRWDLVIQDAFKNAVKLFDSFLKEYGAPQDDAVLEEEKRDESGEDEWDWDRWKSHF 121
              N RWD  IQD  K+A+K FDS L  Y    +D   +  +  E  +D+WDWDRWK HF
Sbjct: 61  SDDNPRWDSAIQDVLKSAIKRFDSVLSWYATLDNDDGEQGSENVEKIDDDWDWDRWKKHF 120

Query: 122 DEVDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQER 181
           D+VDDQ+RL+S+LKSQL  A+ +E+Y+DAARLKVAIAA ATNDAVG+VMS   RA+++ER
Sbjct: 121 DQVDDQDRLLSVLKSQLNRAIKREDYEDAARLKVAIAATATNDAVGKVMSTFYRALLEER 180

Query: 182 YEDAALLRDNAGAGLENGGIDIGNLVKEIGPYYRNGSGGFCWKKHFMACYYKEQLATAAA 241
           Y+DA  LRD AGAGL      I   VK+  P+           ++    Y   QL+T+AA
Sbjct: 181 YKDAVYLRDKAGAGLVGWWSGISEDVKD--PFGLIVQITAEHGRYVARSYNPRQLSTSAA 238

Query: 242 GVPLFEIFLTVNKKGEYQQQAVYLKRKGVFDDSSVVSSKASGGTGRLNPPGSTEDKDDLL 301
           G PLFEIFLT++ KG Y++QAVYLK K +F D   + S+       L  PG  ED  +L 
Sbjct: 239 GAPLFEIFLTLDGKGNYKKQAVYLKWKEIFPDVPTMPSRTLTPGRFLTSPGRKEDTGNLA 298

Query: 302 VVSAEDTEDGDESDDSSDLAEGLSGFQNILRDMIPGVRVKVLKVTAPGKVDRDFISKVIE 361
           V S+ED E  +  DDS  L E  SGFQ+ LRDMIPGV+VKV+KVTAPG+VD+DFISKVIE
Sbjct: 299 VESSEDEESDNSDDDSDLLEES-SGFQSFLRDMIPGVKVKVMKVTAPGRVDKDFISKVIE 357

Query: 362 QIMEEEDEEKDAEVENVESEDEDKDESDEERNEIEMDAGRGIIENEEEQTEVSVKVVVGG 421
           QI +EEDEE D ++E+++ ED+ K E DE+  +IE+++    I +     E++VK V+G 
Sbjct: 358 QIADEEDEENDLDIEDIDVEDDTKAEIDEKNADIELESVTDEIIDNNGGREIAVKFVIGD 417

Query: 422 LVQKLPGNKPAKEFLRVPAKLEKKGRLSFSFSIEKDSKRRDS-GAKDLGSVDNKARLGSQ 480
           +V +L GN+P KE LR PA LE     SF   +EKD   ++S G +    VD K    S+
Sbjct: 418 IVDRLSGNQPLKESLRSPANLESVENSSFYLRLEKDLNVKESKGVEGTTLVDGKGSRQSR 477

Query: 481 RSIENVMLDLAKFIGREK-IPLKVLKDLSELINLSLSQAQNHQPLSGSTTFHRIETATSQ 539
           R IEN+M DLAK I +EK I +K+LKD+ EL++L+LSQAQN Q LSG T F RI+   S 
Sbjct: 478 RRIENIMGDLAKSIEKEKKISVKMLKDVGELLSLTLSQAQNRQQLSGLTKFRRIDVTPSL 537

Query: 540 DALNGLYIGVHGLRTSEVINLRRKFGQWQDDGGIKNPSNLEFYEYVEAIKVTGDPYVPAG 599
           D L+GLYIG HGL TSEVI+L+RKFGQW+     K P+++EFYEYVEA+K+TGDPYVPAG
Sbjct: 538 DPLDGLYIGAHGLYTSEVIHLKRKFGQWKGGKESKKPTDIEFYEYVEAVKLTGDPYVPAG 597

Query: 600 QVAFRAKVGKRYQLPHKGIIPEEFGVIARYKGQGRLAEPGFQNPRWVDGELVILDGKYIK 659
           +VAFRAK+G+RY+LPHKG+IPEEFGVIARYKGQGRLA+PGF+NPRWVDGELVILDGKY+K
Sbjct: 598 KVAFRAKIGRRYELPHKGLIPEEFGVIARYKGQGRLADPGFRNPRWVDGELVILDGKYVK 657

Query: 660 GGPVVGFVYWAPEYHFLVFFNRLRLQ 685
           GGPVVGFVYWAPEYHF++FFNRLRLQ
Sbjct: 658 GGPVVGFVYWAPEYHFVMFFNRLRLQ 683


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.134    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 277,621,295
Number of Sequences: 539616
Number of extensions: 13334681
Number of successful extensions: 86080
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 657
Number of HSP's that attempted gapping in prelim test: 65323
Number of HSP's gapped (non-prelim): 11351
length of query: 685
length of database: 191,569,459
effective HSP length: 124
effective length of query: 561
effective length of database: 124,657,075
effective search space: 69932619075
effective search space used: 69932619075
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)

Enables higher plants to perceive singlet oxygen as a stress signal that activates a genetically determined stress response program.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	685
224141143	677	predicted protein [Populus trichocarpa]	0.956	0.967	0.661	0.0
255584041	675	EXECUTER1 protein, chloroplast precursor	0.967	0.982	0.680	0.0
225464089	702	PREDICTED: protein EXECUTER 1, chloropla	0.921	0.898	0.669	0.0
356528017	674	PREDICTED: protein EXECUTER 1, chloropla	0.960	0.976	0.56	0.0
356519469	699	PREDICTED: protein EXECUTER 1, chloropla	0.959	0.939	0.546	0.0
449516665	685	PREDICTED: protein EXECUTER 1, chloropla	0.953	0.953	0.575	0.0
449438572	700	PREDICTED: protein EXECUTER 1, chloropla	0.957	0.937	0.564	0.0
297802636	680	hypothetical protein ARALYDRAFT_913050 [	0.982	0.989	0.552	0.0
18418256	684	protein EXECUTER 1 [Arabidopsis thaliana	0.988	0.989	0.559	0.0
356546745	636	PREDICTED: protein EXECUTER 1, chloropla	0.818	0.882	0.571	1e-176

>gi|224141143|ref|XP_002323934.1| predicted protein [Populus trichocarpa] gi|222866936|gb|EEF04067.1| predicted protein [Populus trichocarpa]

 Score =  858 bits (2216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/688 (66%), Positives = 534/688 (77%), Gaps = 33/688 (4%)

Query: 15  APTTPHKRSFTNSHNFLRVKRPSYPHPPP-FPA------------LCRCSAPSSADNNNN 61
           +P +P+K +FT        KR  YP P P FP+            LCRC+     +++NN
Sbjct: 5   SPPSPYKLTFTTR------KRLPYPSPKPQFPSRYPLSRLLSDSTLCRCT-----ESSNN 53

Query: 62  SSFNRRWDLVIQDAFKNAVKLFDSFL----KEYGAPQDDAVLEEEKRDESGEDEWDWDRW 117
            S   RWD  +Q  FKNA+K FDS++    K  G          E+ +E     WDWDRW
Sbjct: 54  PSIQWRWDAALQAVFKNAIKSFDSYMNPTKKGVGNKGVMEGETGEEEEEDDGTVWDWDRW 113

Query: 118 KSHFDEVDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAV 177
           + HFD+VD+Q+RLVS+LKSQLGNAV +E+Y+DAARLKVAIAAAA+ND VGRVMS LNRA+
Sbjct: 114 RLHFDQVDEQQRLVSLLKSQLGNAVNREDYEDAARLKVAIAAAASNDTVGRVMSQLNRAL 173

Query: 178 VQERYEDAALLRDNAGAGLENGGIDIGNLVKEIGPYYRNGSGGFCWKKHFMACYYKEQLA 237
            QERY +AA LRDNAGAGL      I   V +  PY           ++    Y   QLA
Sbjct: 174 AQERYLEAAFLRDNAGAGLVGWWSGISEDVDD--PYGLIIRITAEHGRYVARSYSPRQLA 231

Query: 238 TAAAGVPLFEIFLTVNKKGEYQQQAVYLKRKGVFDDSSVVSSKASGGTGRLNPPGSTEDK 297
           TAA GVPLFEIFLT NKKGEY +QAVYLKRKG+F D S + SKASG T RLNPPG TEDK
Sbjct: 232 TAAVGVPLFEIFLTTNKKGEYNEQAVYLKRKGLFQDPSTLPSKASGATSRLNPPGPTEDK 291

Query: 298 DDLLVVSAEDTEDGDESDDSSDLAEGLSGFQNILRDMIPGVRVKVLKVTAPGKVDRDFIS 357
            DL VVS E+ +D D+++D SDLAEGL GFQNILRDM+PGV+VKVLKVT P KVD+DFIS
Sbjct: 292 SDLFVVSTEEVDDADDTEDGSDLAEGLPGFQNILRDMVPGVKVKVLKVTTPAKVDKDFIS 351

Query: 358 KVIEQIMEEEDEEKDAEVENVESEDEDKDESDEERNEIEMDAGRGIIENEEEQTEVSVKV 417
           KVIEQI++EED+EKD E+E+ E+ED+ K ESD+ER+EIEMDAGRGII++E  Q+E++VKV
Sbjct: 352 KVIEQIIDEEDDEKDIELESEEAEDDGKGESDQERDEIEMDAGRGIIDDEN-QSEIAVKV 410

Query: 418 VVGGLVQKLPGNKPAKEFLRVPAKLEKKGRLSFSFSIEKDSKRRDSGAKDLGSVDNKARL 477
           VVGGL QKL G+ PAK  +RVPAKL++KGR SFSFSIEK+  +++  AK+L S D KA+L
Sbjct: 411 VVGGLAQKLSGSVPAKGSIRVPAKLDRKGRKSFSFSIEKEVNQQN--AKELASADRKAKL 468

Query: 478 GSQRSIENVMLDLAKFIGREKIPLKVLKDLSELINLSLSQAQNHQPLSGSTTFHRIETAT 537
             QRS+++VM DLAKFIG EKIPLKVLKD+ ELI+L+LSQAQN QPLSGSTTFHRIE +T
Sbjct: 469 RGQRSVDHVMFDLAKFIGSEKIPLKVLKDVGELISLTLSQAQNRQPLSGSTTFHRIEIST 528

Query: 538 SQDALNGLYIGVHGLRTSEVINLRRKFGQWQDDGGIKNPSNLEFYEYVEAIKVTGDPYVP 597
           S D LNGLYIG HGL TSEVI+L+RKFGQWQ+D G K  SNLEFYEYVEA+K+TGDPYVP
Sbjct: 529 SPDPLNGLYIGAHGLYTSEVIHLQRKFGQWQEDHGTKESSNLEFYEYVEAVKLTGDPYVP 588

Query: 598 AGQVAFRAKVGKRYQLPHKGIIPEEFGVIARYKGQGRLAEPGFQNPRWVDGELVILDGKY 657
           AGQVAFRAKVGKRYQLPH+GIIPEEFGVIARYKGQG+LAEPGF+N RWVDGELVILDGKY
Sbjct: 589 AGQVAFRAKVGKRYQLPHRGIIPEEFGVIARYKGQGKLAEPGFRNHRWVDGELVILDGKY 648

Query: 658 IKGGPVVGFVYWAPEYHFLVFFNRLRLQ 685
           IKGGPVVGFVYWAPEYHFLVFFNRLRLQ
Sbjct: 649 IKGGPVVGFVYWAPEYHFLVFFNRLRLQ 676

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584041|ref|XP_002532765.1| EXECUTER1 protein, chloroplast precursor, putative [Ricinus communis] gi|223527494|gb|EEF29622.1| EXECUTER1 protein, chloroplast precursor, putative [Ricinus communis]

 Score =  842 bits (2176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/679 (68%), Positives = 538/679 (79%), Gaps = 16/679 (2%)

Query: 15  APTTPHKRSFTNSHNFLRVKR-----PSYPHPPPFPALCRCSAPSSADNNNNSSFNRRWD 69
           +P TPHK SF   H FL  KR      +       P+LCRCS  +++D++++SS    W+
Sbjct: 5   SPPTPHKLSF-KKHKFLPRKRQFYPSSTSSSIYSTPSLCRCST-NASDDSSSSSIQWPWN 62

Query: 70  LVIQDAFKNAVKLFDSFLKEYGAPQDDAVLEEEKRDESGEDEWDWDRWKSHFDEVDDQER 129
              Q    +A+K  +SF       ++ +    EK + S ED WDWDRW+ HFDEVDDQER
Sbjct: 63  APFQGVIGSAMKKIESFFNNNDKKEEHSGNNREKDEISEEDNWDWDRWRKHFDEVDDQER 122

Query: 130 LVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDAALLR 189
           +V++LKSQLG+AV +E+Y+DAARLKVAIAAAATND VGRVMS LNRAV +ERY+DAALLR
Sbjct: 123 IVTVLKSQLGHAVNREDYEDAARLKVAIAAAATNDVVGRVMSQLNRAVAEERYQDAALLR 182

Query: 190 DNAGAGLENGGIDIGNLVKEIGPYYRNGSGGFCWKKH--FMA-CYYKEQLATAAAGVPLF 246
           DNAGAGL   G   G    E  PY   G       +H  F+A  Y   QLATAA G P+F
Sbjct: 183 DNAGAGLV--GWWSGMSEDEHDPY---GLIIRITAEHGRFVARSYSPRQLATAAVGSPVF 237

Query: 247 EIFLTVNKKGEYQQQAVYLKRKGVFDDSSVVSSKASGGTGRLNPPGSTEDKDDLLVVSAE 306
           EIFLT NKKG+++QQAVYLKRKG+  D S VSSKA G   R+NPPG TE+K DL VVS E
Sbjct: 238 EIFLTKNKKGDFKQQAVYLKRKGLSQDPSTVSSKAPGAPSRMNPPGPTEEKSDLFVVSTE 297

Query: 307 DTEDGDESDDSSDLAEGLSGFQNILRDMIPGVRVKVLKVTAPGKVDRDFISKVIEQIMEE 366
           DT+DGDE++D SD+AEGL GFQNILRDM+PGV+VKVLKVT   KVDRDFISKVIEQIM+E
Sbjct: 298 DTDDGDETEDGSDIAEGLPGFQNILRDMVPGVKVKVLKVTTSSKVDRDFISKVIEQIMDE 357

Query: 367 EDEEKDAEVENVESEDEDKDESDEERNEIEMDAGRGIIENEEEQTEVSVKVVVGGLVQKL 426
           EDEE+D E+++VE+EDE   ESD+E++EIEMDA  GIIE++   +E+SVKVVVGGL QK 
Sbjct: 358 EDEEEDTELQSVEAEDESSGESDQEKDEIEMDAVHGIIEDDGP-SEISVKVVVGGLAQKF 416

Query: 427 PGNKPAKEFLRVPAKLEKKGRLSFSFSIEKDSKRRDSGAKDLGSVDNKARLGSQRSIENV 486
           PG+ P+KE LRVPAKLEKKGR SFSFSIEKD  ++D GAK   SVD KA+L  QRS +++
Sbjct: 417 PGSVPSKESLRVPAKLEKKGRWSFSFSIEKDVNQQDPGAKGAASVDRKAKLQGQRSADSI 476

Query: 487 MLDLAKFIGREKIPLKVLKDLSELINLSLSQAQNHQPLSGSTTFHRIETATSQDALNGLY 546
           MLDLAKFIG+EKIP+KVLKD+ +LIN +LSQAQN QPLSGSTTFHRIET+ S D LNGLY
Sbjct: 477 MLDLAKFIGQEKIPMKVLKDVRDLINFTLSQAQNRQPLSGSTTFHRIETSASPDPLNGLY 536

Query: 547 IGVHGLRTSEVINLRRKFGQWQDDGGIKNPSNLEFYEYVEAIKVTGDPYVPAGQVAFRAK 606
           IG HGL TSEVI+L+RKFGQWQDD G K PSNLEFYEYVEA+K+TGDPYVPAGQVAFRAK
Sbjct: 537 IGAHGLYTSEVIHLQRKFGQWQDDRGTKEPSNLEFYEYVEAVKLTGDPYVPAGQVAFRAK 596

Query: 607 VGKRYQLPHKGIIPEEFGVIARYKGQGRLAEPGFQNPRWVDGELVILDGKYIKGGPVVGF 666
           VGKRYQLPH+GIIPEEFGVIARYKGQGRLAEPGFQNPRWVDGELV+LDGKYIKGGPVVGF
Sbjct: 597 VGKRYQLPHRGIIPEEFGVIARYKGQGRLAEPGFQNPRWVDGELVVLDGKYIKGGPVVGF 656

Query: 667 VYWAPEYHFLVFFNRLRLQ 685
           VYWAPEYHFLVFFNRLRLQ
Sbjct: 657 VYWAPEYHFLVFFNRLRLQ 675

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464089|ref|XP_002271011.1| PREDICTED: protein EXECUTER 1, chloroplastic [Vitis vinifera] gi|296088775|emb|CBI38225.3| unnamed protein product [Vitis vinifera]

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/644 (66%), Positives = 507/644 (78%), Gaps = 13/644 (2%)

Query: 47  LCRCSAPSSADNNNNSSFNRRWDLVIQDAFKNAVKLFDSFLKEY--GAPQDDAVLE-EEK 103
           +CRC    +    ++     RWD  I+   KNA+K FDS++  Y  GA    + ++  E+
Sbjct: 66  VCRCHGHGNLPPGDDF----RWDSAIKQFLKNAIKRFDSYVNSYRNGAKDGRSCVDVAER 121

Query: 104 RDESGED--EWDWDRWKSHFDEVDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA 161
            +E+ E+  EWDWDRW+ HF EVD+QER+VSILKSQLG+AV KE+Y+DAARLKVAIAAAA
Sbjct: 122 GNEAAEEDKEWDWDRWRKHFSEVDEQERIVSILKSQLGHAVKKEDYEDAARLKVAIAAAA 181

Query: 162 TNDAVGRVMSNLNRAVVQERYEDAALLRDNAGAGLENGGIDIGNLVKEIGPYYRNGSGGF 221
           TND VGRVMS LNRA+ +ERY+DAA +RD+AGAGL      I +   +  PY R      
Sbjct: 182 TNDTVGRVMSLLNRAIAEERYDDAAFIRDSAGAGLVGWWAGISDDNND--PYGRIVRISA 239

Query: 222 CWKKHFMACYYKEQLATAAAGVPLFEIFLTVNKKGEYQQQAVYLKRKGVFDDSSVVSSKA 281
              ++    Y   QLATA  G PLFEIFLT NK+GEY+QQAVYLKR G+  D S +SSK+
Sbjct: 240 EHGRYVARSYSPRQLATATVGAPLFEIFLTTNKRGEYRQQAVYLKRGGLSQDLSTMSSKS 299

Query: 282 SGGTGRLNPPGSTEDKDDLLVVSAEDTEDGDESDDSSDLAEGLSGFQNILRDMIPGVRVK 341
           SG T  LNP    E K DLL  S ED+ED D   DS D AEGLSGF+NILRDMIPGV+VK
Sbjct: 300 SGSTSNLNPLDLAEGKSDLLATSIEDSEDEDRDGDS-DAAEGLSGFRNILRDMIPGVKVK 358

Query: 342 VLKVTAPGKVDRDFISKVIEQIMEEEDEEKDAEVENVESEDEDKDESDEERNEIEMDAGR 401
           VLKVTAPGKVDRD ISKVIEQIMEEE++E+D E+E+VE+E+E K ESD+E++EIEM+AG 
Sbjct: 359 VLKVTAPGKVDRDLISKVIEQIMEEEEDEQDIELESVETEEEVKVESDQEQDEIEMEAGH 418

Query: 402 GIIENEEEQTEVSVKVVVGGLVQKLPGNKPAKEFLRVPAKLEKKGRLSFSFSIEKDSKRR 461
           GII+  EEQ E++VKV VGGLVQKL    P+K+ LRVPA+LEKKGR+SFSFSIE+D  R+
Sbjct: 419 GIID-REEQNEIAVKVFVGGLVQKLSAGVPSKKLLRVPARLEKKGRMSFSFSIERDDNRK 477

Query: 462 DSGAKDLGSVDNKARLGSQRSIENVMLDLAKFIGREKIPLKVLKDLSELINLSLSQAQNH 521
           D+G K   S+D KA+L  QRSI++VM DLAKFIGREKIP+KVLKD+ ELINL+LSQA N 
Sbjct: 478 DNGGKGQASLDKKAKLRGQRSIDHVMFDLAKFIGREKIPMKVLKDVGELINLTLSQAHNR 537

Query: 522 QPLSGSTTFHRIETATSQDALNGLYIGVHGLRTSEVINLRRKFGQWQDDGGIKNPSNLEF 581
           QPLSGSTTF+RIE   S D LNGLYIG HGL TSE+I+LRRKFGQW++D G K PSNLEF
Sbjct: 538 QPLSGSTTFNRIEIPASPDPLNGLYIGSHGLYTSEIIHLRRKFGQWKEDAGAKEPSNLEF 597

Query: 582 YEYVEAIKVTGDPYVPAGQVAFRAKVGKRYQLPHKGIIPEEFGVIARYKGQGRLAEPGFQ 641
           YEYVEA+K+TGDPYVPAGQVAFRAKVGKRYQLPHKGIIPEEFGVIARY+GQGRLAEPGF+
Sbjct: 598 YEYVEALKLTGDPYVPAGQVAFRAKVGKRYQLPHKGIIPEEFGVIARYRGQGRLAEPGFR 657

Query: 642 NPRWVDGELVILDGKYIKGGPVVGFVYWAPEYHFLVFFNRLRLQ 685
           NPRWVDGELVILDGKYIKGGP+VGFVYWAP YHFLVFFNRL L 
Sbjct: 658 NPRWVDGELVILDGKYIKGGPIVGFVYWAPGYHFLVFFNRLMLH 701

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528017|ref|XP_003532602.1| PREDICTED: protein EXECUTER 1, chloroplastic-like [Glycine max]

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/700 (56%), Positives = 488/700 (69%), Gaps = 42/700 (6%)

Query: 1   MASSPSSSPPPSISAPTTPHKRSFTNSHNFLRVKRPSYPHPPPFPAL--CRCSAPSSADN 58
           MASS       SISAPT     +F      +    P  P   PFP+   CRC A +S+D+
Sbjct: 1   MASS-------SISAPTL----TFPTQKLAVPFPAPRTPSLLPFPSQPPCRCLASASSDD 49

Query: 59  NNNSSFNRRWDLVIQDAFKNAVKLFDSFLKEYGAPQDDAVLEEEKRDESGEDEWDWDRWK 118
             + +    WD V+   F    K  DS+ K  G    +A  ++  R   G+++WDWDRW+
Sbjct: 50  RCSGAKRSGWDSVLHQ-FSEVAKRVDSYWKSLG----NAAADDRVRVVGGDEDWDWDRWR 104

Query: 119 SHFDEVDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVV 178
            HF+E+D+QERL+SI KSQL  AV+ E Y+DAARLKVA AA A ND+VGRVMS LNRA+ 
Sbjct: 105 RHFEEIDEQERLLSIFKSQLSRAVYLENYEDAARLKVAFAATANNDSVGRVMSYLNRAIK 164

Query: 179 QERYEDAALLRDNAGAGL-------ENGGIDIGNLVKEIGPYYRNGSGGFCWKKHFMACY 231
           +ERY DAA LRD AGAGL         G  D   L+  I P +          ++    Y
Sbjct: 165 EERYGDAAFLRDKAGAGLVGWWSGISEGVNDPHGLIIRITPEH---------GRYVARSY 215

Query: 232 YKEQLATAAAGVPLFEIFLTVNKKGEYQQQAVYLKRKGVFDDSSVVSSKASGGTGRLNPP 291
              QLAT+AAG+PLFE FLT++KKGE++ QAVYLK++G F      SSK     GRL+  
Sbjct: 216 SPRQLATSAAGIPLFEFFLTMDKKGEFKSQAVYLKQRGAFHGPPTTSSKTLDAAGRLSSV 275

Query: 292 GSTEDKDDLLVVSAEDTEDGDESDDSSDLAEGLSGFQNILRDMIPGVRVKVLKVTAPGKV 351
            STEDK +L VVS ED E+G++ +D SD AEG+ GFQN+L+DMIPGV+VKV KV  P KV
Sbjct: 276 ESTEDKSELFVVSTEDPENGNDRNDGSDPAEGMPGFQNVLKDMIPGVKVKVFKVITPEKV 335

Query: 352 DRDFISKVIEQIMEEEDEEKDAEVENVESE-----DEDKDESDEE-RNEIEMDAGRGIIE 405
           D+D +S VIE+I+E+ED ++D + E          +E K E+D+E  +EIE++AG G  E
Sbjct: 336 DKD-LSNVIEKIIEDEDGDEDEDEEMENDAESLELEEIKSETDQEGDDEIEINAGLGTFE 394

Query: 406 NEEEQTEVSVKVVVGGLVQKLPGNKPAKEFLRVPAKLEKKGRLSFSFSIEKDSKRRDSGA 465
            E+ Q E +VK+ +GGLVQKL GN  +++ LRVPA LE KGR SFSF++EK+  ++    
Sbjct: 395 RED-QNEFAVKIAIGGLVQKLSGNLSSRDLLRVPAMLEMKGRGSFSFTVEKEVNQQVGLD 453

Query: 466 KDLGSVDNKARLGSQRSIENVMLDLAKFIGREKIPLKVLKDLSELINLSLSQAQNHQPLS 525
           K   S D   +   +R +++V+ DLAKFIGR KIP KVLK++ ELINL+LSQAQ+H  LS
Sbjct: 454 KGKSSSDKSTKFQGRRRVDHVIFDLAKFIGRGKIPSKVLKEVGELINLTLSQAQSHHQLS 513

Query: 526 GSTTFHRIETATSQDALNGLYIGVHGLRTSEVINLRRKFGQWQDDGGIKNPSNLEFYEYV 585
           GST F+RIE   S D LNGLYIG HGL +SEVI+LRR+FGQWQ+D G K PSN+EFYEYV
Sbjct: 514 GSTIFNRIEIPASFDPLNGLYIGAHGLYSSEVIHLRRRFGQWQEDNGAKEPSNIEFYEYV 573

Query: 586 EAIKVTGDPYVPAGQVAFRAKVGKRYQLPHKGIIPEEFGVIARYKGQGRLAEPGFQNPRW 645
           EA+K+TGDPYVPAGQVAFRAK+GKRYQLPHKGIIPEEFGVIARYKG+GRLAEPGFQN RW
Sbjct: 574 EALKLTGDPYVPAGQVAFRAKIGKRYQLPHKGIIPEEFGVIARYKGEGRLAEPGFQNARW 633

Query: 646 VDGELVILDGKYIKGGPVVGFVYWAPEYHFLVFFNRLRLQ 685
           VDGELVILDGK++K GPVVGFVYWAP YHFLVFFNRLRLQ
Sbjct: 634 VDGELVILDGKHLKAGPVVGFVYWAPGYHFLVFFNRLRLQ 673

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519469|ref|XP_003528395.1| PREDICTED: protein EXECUTER 1, chloroplastic-like [Glycine max]

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/726 (54%), Positives = 487/726 (67%), Gaps = 69/726 (9%)

Query: 1   MASSPSSSPPPSISAPTTPHKRSFTNSHNFLRVKRPSYPHPPPFP--ALCRCSAPSSADN 58
           MASS       SISAPT     +F      +    P  P   PFP  + CRC A +S+D+
Sbjct: 1   MASS-------SISAPTL----TFPTQKLAVPFPAPRTPSLLPFPLQSPCRCLASASSDD 49

Query: 59  NNNSSFNRRWDLVIQDAFKNAVKLFDSFLKEYGAPQDDAVLEEEKRDESGEDEWDWDRWK 118
            +     R W+ V+   F    K  DSF K  G   DD        ++   D     RW+
Sbjct: 50  RSGGGAKRGWESVLHH-FSEVAKRVDSFWKSLGNADDDRGRGGGGDEDWDWD-----RWR 103

Query: 119 SHFDEVDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVV 178
            HF+E+D+QERL+S LKSQL  AV+ E+Y+DAARLKVA AAAA ND+VGRVMS LNRA+ 
Sbjct: 104 RHFEEIDEQERLLSTLKSQLSRAVYLEDYEDAARLKVAFAAAANNDSVGRVMSYLNRAIK 163

Query: 179 QERYEDAALLRDNAG-------AGLENGGIDIGNLVKEIGPYYRNGSGGFCWKKHFMACY 231
           +ERY DAA LRD AG       AG+  G  D  +L+  I P +          ++    Y
Sbjct: 164 EERYGDAAFLRDKAGTGLVGWWAGISEGVNDPHSLIIRITPEH---------GRYVARSY 214

Query: 232 YKEQLATAAAGVPLFEIFLTVNKKGEYQQQAVYLKRKGVFDDSSVVSSKASGGTGRLNPP 291
              QLAT+AAG+PLFE FLT++KKGE++ QAVYL+R+G F      SSK   G GRL+  
Sbjct: 215 SPRQLATSAAGIPLFEFFLTMDKKGEFKSQAVYLRRRGAFHGPPTNSSKTLDGAGRLSSV 274

Query: 292 GSTEDKDDLLVVSAEDTEDGDESDDSSDLAEGLSGFQNILRDMIPGVRVKVLKVTAPGKV 351
            STEDK +L VVS ED E+ D+ +D SD AEG+ GFQN+L+DMIPGV+VKV KV  P KV
Sbjct: 275 ESTEDKSELYVVSTEDPENDDDRNDGSDPAEGMPGFQNVLKDMIPGVKVKVFKVITPDKV 334

Query: 352 DRDFISKVIEQIMEEEDEEKDAE--------------------------------VENVE 379
           D+D IS VIEQI+E+EDE++D                                   E++E
Sbjct: 335 DKD-ISNVIEQIIEDEDEDEDGNEDEDEDEDEDEDEDEEEDEDEDEDEDEGKENDTESLE 393

Query: 380 SEDEDKDESDEERNEIEMDAGRGIIENEEEQTEVSVKVVVGGLVQKLPGNKPAKEFLRVP 439
            ED   +   E  +EIE++AG G  E+E+ Q E +VK+ +GGLVQKL GN  +++ LRVP
Sbjct: 394 LEDIKSETDQEGDDEIEVNAGLGTFESED-QNEFAVKIAIGGLVQKLSGNLSSRDLLRVP 452

Query: 440 AKLEKKGRLSFSFSIEKDSKRRDSGAKDLGSVDNKARLGSQRSIENVMLDLAKFIGREKI 499
           AKLE KGR SFSF++EK+  ++    K   S D   +   +R +++V+ DLAKFIGR KI
Sbjct: 453 AKLEMKGRGSFSFTVEKEVNQQVGLDKGNSSSDKSTKFQGRRRVDHVIFDLAKFIGRGKI 512

Query: 500 PLKVLKDLSELINLSLSQAQNHQPLSGSTTFHRIETATSQDALNGLYIGVHGLRTSEVIN 559
           P KVLK++ ELINL+LSQAQ+H  LSGST F+RIE  TS D LNGLYIG HGL +SEVI+
Sbjct: 513 PSKVLKEVGELINLTLSQAQSHHQLSGSTIFNRIEIPTSFDPLNGLYIGAHGLYSSEVIH 572

Query: 560 LRRKFGQWQDDGGIKNPSNLEFYEYVEAIKVTGDPYVPAGQVAFRAKVGKRYQLPHKGII 619
           LRR+FGQWQ+D G K PSNLEFYEYVEA+K+TGDPYVPAGQVAFRAK+GKRYQLPHKGII
Sbjct: 573 LRRRFGQWQEDNGAKEPSNLEFYEYVEALKLTGDPYVPAGQVAFRAKIGKRYQLPHKGII 632

Query: 620 PEEFGVIARYKGQGRLAEPGFQNPRWVDGELVILDGKYIKGGPVVGFVYWAPEYHFLVFF 679
           PEEFGVIARYKG+GRLAEPGFQNPRWVDGELVILDGK++K GPVVGFVYWAPEYHFLVFF
Sbjct: 633 PEEFGVIARYKGEGRLAEPGFQNPRWVDGELVILDGKHLKAGPVVGFVYWAPEYHFLVFF 692

Query: 680 NRLRLQ 685
           NRLRLQ
Sbjct: 693 NRLRLQ 698

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516665|ref|XP_004165367.1| PREDICTED: protein EXECUTER 1, chloroplastic-like [Cucumis sativus]

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/698 (57%), Positives = 490/698 (70%), Gaps = 45/698 (6%)

Query: 15  APTTPHKRSFT-----NSHNFLRVKRPSYPHPPP-FPALCRCSAPSSADNNNNSSFNRRW 68
           +P TPH+  F+     +   FL+   P  P PP  +  +C C  P S   +  S     W
Sbjct: 5   SPPTPHQLFFSTLKFQHPTPFLK---PYAPSPPSQYHTICHCHNPDSPSPSEPSL-PWGW 60

Query: 69  DLVIQDAFKNAVKLFDSFLKEYGAPQDDAVLEEEKRDESGEDEWDWDRWKSHFDEVDDQE 128
              +QD F+   + FDS +        D     +K+D   +  WDWDRW+ HFDEVD+QE
Sbjct: 61  GSALQDLFQTTFRRFDSLVNNRNDGSKDTY---DKKDVDDDRSWDWDRWRKHFDEVDEQE 117

Query: 129 RLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDAALL 188
           RLVS LKS++ +AV+ E+Y DAARLKVAIAA ATND VGR MS L+RA+ +ERY DAA +
Sbjct: 118 RLVSFLKSRISHAVYAEDYQDAARLKVAIAALATNDTVGRAMSYLHRAIEEERYHDAAFI 177

Query: 189 RDNAGAGLENGGIDIGNLVKEIGPYYRNGSGGFCWK------KHFMACYYKEQLATAAAG 242
           RDNAGAGL      I           +N S G   +      ++    Y   QLATAA G
Sbjct: 178 RDNAGAGLVGWWSGISK--------DKNNSRGLIIRITAEHGRYVARSYSPRQLATAADG 229

Query: 243 VPLFEIFLTVNKKGEYQQQAVYLKRKGVFDDSSVVSSKASGGTGRLNPPGSTEDKDDLLV 302
           VPLFEIFL +NK GEY+QQAVYLKRKGV  D+S    K       LNP    E+KDDL++
Sbjct: 230 VPLFEIFLRMNKMGEYKQQAVYLKRKGVLSDNSNGPFKGLDSPSVLNPLDPIEEKDDLII 289

Query: 303 VSAEDTEDGDESDDSSDLAEGLSGFQNILRDMIPGVRVKVLKVTAPGKVDRDFISKVIEQ 362
           +  E+ EDGD  ++ SD+A G   FQNILRDMIPGV+VKVLK++ PGKVD+D ISKVIEQ
Sbjct: 290 IGGEEAEDGDIRNEDSDIAVGFPVFQNILRDMIPGVKVKVLKLSTPGKVDKDVISKVIEQ 349

Query: 363 IMEEEDEE--------------KDAEVENVESEDEDKDESDEERNEIEMDAGRGIIENEE 408
           I+EEE++E              KD + E++E ED+ KD  D +  +  +DA  G +EN+ 
Sbjct: 350 IIEEEEDEEEEEEEEEDDVESEKDTDFEDLEVEDKIKD--DHQEKDAGLDADDGFLENQG 407

Query: 409 EQTEVSVKVVVGGLVQKLPGNKPAKEFLRVPAKLEKKGRLSFSFSIEKDSKRRDSGAKDL 468
            + EV++K++VGGLVQKL G   +K  LRVPAKL++KGR SFSFSIE      DS  K++
Sbjct: 408 -RNEVAIKIIVGGLVQKLSGGVSSKNVLRVPAKLDRKGRSSFSFSIENVVNEHDSLGKEI 466

Query: 469 GSVDNKARLGSQRSIENVMLDLAKFIGREKIPLKVLKDLSELINLSLSQAQNHQPLSGST 528
            S+D K++   Q SI++VMLDLAKF+G+EKIPLK LKDLSELI LS+SQAQN+QPLSGST
Sbjct: 467 KSLDRKSKPQGQGSIDHVMLDLAKFVGKEKIPLKALKDLSELIKLSISQAQNYQPLSGST 526

Query: 529 TFHRIETATSQDALNGLYIGVHGLRTSEVINLRRKFGQWQDDGG-IKNPSNLEFYEYVEA 587
           +F+RIE   S D LNGLYIG HG+ TSE+I+LRR+FG+WQ+DGG  K PS LEFYEYVEA
Sbjct: 527 SFNRIEIPASSDPLNGLYIGAHGIYTSEIIHLRRRFGRWQEDGGGDKEPSKLEFYEYVEA 586

Query: 588 IKVTGDPYVPAGQVAFRAKVGKRYQLPHKGIIPEEFGVIARYKGQGRLAEPGFQNPRWVD 647
            KV GDPYVPAG+VAFRAKVGKRYQLPHKGIIPEEFGV+ARYKGQGRLAEPGF+NPRWVD
Sbjct: 587 WKVIGDPYVPAGKVAFRAKVGKRYQLPHKGIIPEEFGVVARYKGQGRLAEPGFRNPRWVD 646

Query: 648 GELVILDGKYIKGGPVVGFVYWAPEYHFLVFFNRLRLQ 685
           GELVILDGKYIKGGPVVGFVYWAPE+HFLVFFNRLRLQ
Sbjct: 647 GELVILDGKYIKGGPVVGFVYWAPEFHFLVFFNRLRLQ 684

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438572|ref|XP_004137062.1| PREDICTED: protein EXECUTER 1, chloroplastic-like [Cucumis sativus]

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/710 (56%), Positives = 491/710 (69%), Gaps = 54/710 (7%)

Query: 15  APTTPHKRSFT-----NSHNFLRVKRPSYPHPPP-FPALCRCSAPSSADNNNNSSFNRRW 68
           +P TPH+  F+     +   FL+   P  P PP  +  +C C     + + +  S    W
Sbjct: 5   SPPTPHQLFFSTLKFQHPTPFLK---PYAPSPPSQYHTICHCHN-PDSPSPSEPSLPWGW 60

Query: 69  DLVIQDAFKNAVKLFDSFLKEYGAPQDDAVLEEE------------KRDESGEDEWDWDR 116
              +QD F+   + FDS +        D   + E            K+D   +  WDWDR
Sbjct: 61  GSALQDLFQTTFRRFDSLVNNRNDGSKDTCPDGEALQGRGGVVGDDKKDVDDDRSWDWDR 120

Query: 117 WKSHFDEVDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRA 176
           W+ HFDEVD+QERLVS LKS++ +AV+ E+Y DAARLKVAIAA ATND VGR MS L+RA
Sbjct: 121 WRKHFDEVDEQERLVSFLKSRISHAVYAEDYQDAARLKVAIAALATNDTVGRAMSYLHRA 180

Query: 177 VVQERYEDAALLRDNAGAGLENGGIDIGNLVKEIGPYYRNGSGGFCWK------KHFMAC 230
           + +ERY DAA +RDNAGAGL      I           +N S G   +      ++    
Sbjct: 181 IEEERYHDAAFIRDNAGAGLVGWWSGISK--------DKNNSRGLIIRITAEHGRYVARS 232

Query: 231 YYKEQLATAAAGVPLFEIFLTVNKKGEYQQQAVYLKRKGVFDDSSVVSSKASGGTGRLNP 290
           Y   QLATAA GVPLFEIFL +NK GEY+QQAVYLKRKGV  D+S    K       LNP
Sbjct: 233 YSPRQLATAADGVPLFEIFLRMNKMGEYKQQAVYLKRKGVLSDNSNGPFKGLDSPSVLNP 292

Query: 291 PGSTEDKDDLLVVSAEDTEDGDESDDSSDLAEGLSGFQNILRDMIPGVRVKVLKVTAPGK 350
               E+KDDL+++  E+ EDGD  ++ SD+A G   FQNILRDMIPGV+VKVLK++ PGK
Sbjct: 293 LDPIEEKDDLIIIGGEEAEDGDIRNEDSDIAVGFPVFQNILRDMIPGVKVKVLKLSTPGK 352

Query: 351 VDRDFISKVIEQIMEEEDEE--------------KDAEVENVESEDEDKDESDEERNEIE 396
           VD+D ISKVIEQI+EEE++E              KD + E++E ED+ KD  D +  +  
Sbjct: 353 VDKDVISKVIEQIIEEEEDEEEEEEEEEDDVESEKDTDFEDLEVEDKIKD--DHQEKDAG 410

Query: 397 MDAGRGIIENEEEQTEVSVKVVVGGLVQKLPGNKPAKEFLRVPAKLEKKGRLSFSFSIEK 456
           +DA  G +EN+  + EV++K++VGGLVQKL G   +K  LRVPAKL++KGR SFSFSIE 
Sbjct: 411 LDADDGFLENQG-RNEVAIKIIVGGLVQKLSGGVSSKNVLRVPAKLDRKGRSSFSFSIEN 469

Query: 457 DSKRRDSGAKDLGSVDNKARLGSQRSIENVMLDLAKFIGREKIPLKVLKDLSELINLSLS 516
                DS  K++ S+D K++   Q SI++VMLDLAKF+G+EKIPLK LKDLSELI LS+S
Sbjct: 470 VVNEHDSLGKEIKSLDRKSKPQGQGSIDHVMLDLAKFVGKEKIPLKALKDLSELIKLSIS 529

Query: 517 QAQNHQPLSGSTTFHRIETATSQDALNGLYIGVHGLRTSEVINLRRKFGQWQDDGG-IKN 575
           QAQN+QPLSGST+F+RIE   S D LNGLYIG HG+ TSE+I+LRR+FG+WQ+DGG  K 
Sbjct: 530 QAQNYQPLSGSTSFNRIEIPASSDPLNGLYIGAHGIYTSEIIHLRRRFGRWQEDGGGDKE 589

Query: 576 PSNLEFYEYVEAIKVTGDPYVPAGQVAFRAKVGKRYQLPHKGIIPEEFGVIARYKGQGRL 635
           PS LEFYEYVEA KV GDPYVPAG+VAFRAKVGKRYQLPHKGIIPEEFGV+ARYKGQGRL
Sbjct: 590 PSKLEFYEYVEAWKVIGDPYVPAGKVAFRAKVGKRYQLPHKGIIPEEFGVVARYKGQGRL 649

Query: 636 AEPGFQNPRWVDGELVILDGKYIKGGPVVGFVYWAPEYHFLVFFNRLRLQ 685
           AEPGF+NPRWVDGELVILDGKYIKGGPVVGFVYWAPE+HFLVFFNRLRLQ
Sbjct: 650 AEPGFRNPRWVDGELVILDGKYIKGGPVVGFVYWAPEFHFLVFFNRLRLQ 699

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802636|ref|XP_002869202.1| hypothetical protein ARALYDRAFT_913050 [Arabidopsis lyrata subsp. lyrata] gi|297315038|gb|EFH45461.1| hypothetical protein ARALYDRAFT_913050 [Arabidopsis lyrata subsp. lyrata]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/686 (55%), Positives = 479/686 (69%), Gaps = 13/686 (1%)

Query: 5   PSSSPPPSISAPTTPHKRSFTNSHNFLRVKRPSYPHPPPFP-ALCRCSAPSSADNNNNSS 63
           PS S PPS +   +P   +   S      KRP YPH  P P ALCRCS+ SS  N+++SS
Sbjct: 2   PSLSTPPSQNLAFSPAASA--TSSRLTPSKRPFYPHRLPDPTALCRCSSSSSGSNSSSSS 59

Query: 64  F---NRRWDLVIQDAFKNAVKLFDSFLKEYGAPQDDAVLEEEKRDESGEDEWDWDRWKSH 120
               N RWD  IQD  K+A+K FD+ L  Y    D+   E  ++ +   D    DRWK H
Sbjct: 60  SSDDNPRWDSAIQDVLKSAIKRFDAVLSWYTTTLDNDAGENVEKIDDDWDW---DRWKKH 116

Query: 121 FDEVDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQE 180
           F++VDDQ+RL+S+LKSQL  A+ +E+Y+DAARLKVAIAA ATNDAVG+VMS   RAV++E
Sbjct: 117 FEQVDDQDRLLSVLKSQLNRAIKREDYEDAARLKVAIAATATNDAVGKVMSTFYRAVLEE 176

Query: 181 RYEDAALLRDNAGAGLENGGIDIGNLVKEIGPYYRNGSGGFCWKKHFMACYYKEQLATAA 240
           RY+DA  LRD AGAGL      I   VK+  P+           ++    Y   QL+T+A
Sbjct: 177 RYKDAVYLRDKAGAGLVGWWSGISQDVKD--PFGLIVQITAEHGRYVARSYNPRQLSTSA 234

Query: 241 AGVPLFEIFLTVNKKGEYQQQAVYLKRKGVFDDSSVVSSKASGGTGRLNPPGSTEDKDDL 300
           AG PLFEIFLT++ KG Y++QAVYLK K +F D   + S+       L  PG  ED  +L
Sbjct: 235 AGAPLFEIFLTLDGKGNYKKQAVYLKWKEIFPDVPTMPSRTLTSGRFLTSPGRKEDTGNL 294

Query: 301 LVVSAEDTEDGDESDDSSDLAEGLSGFQNILRDMIPGVRVKVLKVTAPGKVDRDFISKVI 360
            V S+ED E  +  DDS  L E   GFQ+ LRDMIPGV+VKV+KVTAPG+VD+DFISKVI
Sbjct: 295 TVESSEDEESDNSDDDSDLLEESY-GFQSFLRDMIPGVKVKVMKVTAPGRVDKDFISKVI 353

Query: 361 EQIMEEEDEEKDAEVENVESEDEDKDESDEERNEIEMDAGRGIIENEEEQTEVSVKVVVG 420
           EQI +EEDEE D ++E+++ EDE K E DE+   IE+++    I +     E++VK V+G
Sbjct: 354 EQIADEEDEENDLDIEDIDVEDETKAEIDEKNTHIELESVTDEIIDNNGGREIAVKFVIG 413

Query: 421 GLVQKLPGNKPAKEFLRVPAKLEKKGRLSFSFSIEKDSKRRDSGAKDLGSVDNKARLGSQ 480
            +V +L GN+P KE LR PA LE     SF   +EKD   ++S   +   VD K    S+
Sbjct: 414 DIVDRLSGNQPIKESLRSPANLESVENSSFYLRLEKDLNVKESKGVEGTLVDGKGSRQSR 473

Query: 481 RSIENVMLDLAKFIGREK-IPLKVLKDLSELINLSLSQAQNHQPLSGSTTFHRIETATSQ 539
           R I+N+M+DLAK I +EK I +K+LKD+ EL++L+LSQAQN Q LSG T F RI+   S 
Sbjct: 474 RRIDNIMVDLAKSIEKEKKISVKMLKDVGELLSLTLSQAQNRQQLSGLTKFRRIDVTPSL 533

Query: 540 DALNGLYIGVHGLRTSEVINLRRKFGQWQDDGGIKNPSNLEFYEYVEAIKVTGDPYVPAG 599
           D L+GLYIG HGL TSEVI+L+RKFGQW+     K P+++EFYEYVEA+K+TGDPYVPAG
Sbjct: 534 DPLDGLYIGAHGLYTSEVIHLKRKFGQWKGGKESKKPTDIEFYEYVEAVKLTGDPYVPAG 593

Query: 600 QVAFRAKVGKRYQLPHKGIIPEEFGVIARYKGQGRLAEPGFQNPRWVDGELVILDGKYIK 659
           +VAFRAK+G+RY+LPHKG+IPEEFGVIARYKGQGRLA+PGF+NPRWVDGELVILDGKY+K
Sbjct: 594 KVAFRAKIGRRYELPHKGLIPEEFGVIARYKGQGRLADPGFRNPRWVDGELVILDGKYVK 653

Query: 660 GGPVVGFVYWAPEYHFLVFFNRLRLQ 685
           GGPVVGFVYWAPEYHF++FFNRLRLQ
Sbjct: 654 GGPVVGFVYWAPEYHFVMFFNRLRLQ 679

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18418256|ref|NP_567929.1| protein EXECUTER 1 [Arabidopsis thaliana] gi|30689758|ref|NP_849488.1| protein EXECUTER 1 [Arabidopsis thaliana] gi|56404652|sp|Q93YW0.1|EXEC1_ARATH RecName: Full=Protein EXECUTER 1, chloroplastic; Flags: Precursor gi|16604595|gb|AAL24154.1| unknown protein [Arabidopsis thaliana] gi|21436095|gb|AAM51248.1| unknown protein [Arabidopsis thaliana] gi|332660857|gb|AEE86257.1| protein EXECUTER 1 [Arabidopsis thaliana] gi|332660858|gb|AEE86258.1| protein EXECUTER 1 [Arabidopsis thaliana]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/686 (55%), Positives = 487/686 (70%), Gaps = 9/686 (1%)

Query: 5   PSSSPPPSISAPTTPHKRSFTNSHNFLRVKRPSYPHPPPFP-ALCRCSAPSSADNNNNSS 63
           PS S PPS +   +P   S T+S      KR  YPH  P P ALCRCS+ S ++++++SS
Sbjct: 2   PSLSTPPSQNLAFSPAA-SATSSRLTPSSKRSFYPHRLPDPTALCRCSSSSGSNSSSSSS 60

Query: 64  F--NRRWDLVIQDAFKNAVKLFDSFLKEYGAPQDDAVLEEEKRDESGEDEWDWDRWKSHF 121
              N RWD  IQD  K+A+K FDS L  Y    +D   +  +  E  +D+WDWDRWK HF
Sbjct: 61  SDDNPRWDSAIQDVLKSAIKRFDSVLSWYATLDNDDGEQGSENVEKIDDDWDWDRWKKHF 120

Query: 122 DEVDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQER 181
           D+VDDQ+RL+S+LKSQL  A+ +E+Y+DAARLKVAIAA ATNDAVG+VMS   RA+++ER
Sbjct: 121 DQVDDQDRLLSVLKSQLNRAIKREDYEDAARLKVAIAATATNDAVGKVMSTFYRALLEER 180

Query: 182 YEDAALLRDNAGAGLENGGIDIGNLVKEIGPYYRNGSGGFCWKKHFMACYYKEQLATAAA 241
           Y+DA  LRD AGAGL      I   VK+  P+           ++    Y   QL+T+AA
Sbjct: 181 YKDAVYLRDKAGAGLVGWWSGISEDVKD--PFGLIVQITAEHGRYVARSYNPRQLSTSAA 238

Query: 242 GVPLFEIFLTVNKKGEYQQQAVYLKRKGVFDDSSVVSSKASGGTGRLNPPGSTEDKDDLL 301
           G PLFEIFLT++ KG Y++QAVYLK K +F D   + S+       L  PG  ED  +L 
Sbjct: 239 GAPLFEIFLTLDGKGNYKKQAVYLKWKEIFPDVPTMPSRTLTPGRFLTSPGRKEDTGNLA 298

Query: 302 VVSAEDTEDGDESDDSSDLAEGLSGFQNILRDMIPGVRVKVLKVTAPGKVDRDFISKVIE 361
           V S+ED E  +  DDS  L E  SGFQ+ LRDMIPGV+VKV+KVTAPG+VD+DFISKVIE
Sbjct: 299 VESSEDEESDNSDDDSDLLEES-SGFQSFLRDMIPGVKVKVMKVTAPGRVDKDFISKVIE 357

Query: 362 QIMEEEDEEKDAEVENVESEDEDKDESDEERNEIEMDAGRGIIENEEEQTEVSVKVVVGG 421
           QI +EEDEE D ++E+++ ED+ K E DE+  +IE+++    I +     E++VK V+G 
Sbjct: 358 QIADEEDEENDLDIEDIDVEDDTKAEIDEKNADIELESVTDEIIDNNGGREIAVKFVIGD 417

Query: 422 LVQKLPGNKPAKEFLRVPAKLEKKGRLSFSFSIEKDSKRRDS-GAKDLGSVDNKARLGSQ 480
           +V +L GN+P KE LR PA LE     SF   +EKD   ++S G +    VD K    S+
Sbjct: 418 IVDRLSGNQPLKESLRSPANLESVENSSFYLRLEKDLNVKESKGVEGTTLVDGKGSRQSR 477

Query: 481 RSIENVMLDLAKFIGREK-IPLKVLKDLSELINLSLSQAQNHQPLSGSTTFHRIETATSQ 539
           R IEN+M DLAK I +EK I +K+LKD+ EL++L+LSQAQN Q LSG T F RI+   S 
Sbjct: 478 RRIENIMGDLAKSIEKEKKISVKMLKDVGELLSLTLSQAQNRQQLSGLTKFRRIDVTPSL 537

Query: 540 DALNGLYIGVHGLRTSEVINLRRKFGQWQDDGGIKNPSNLEFYEYVEAIKVTGDPYVPAG 599
           D L+GLYIG HGL TSEVI+L+RKFGQW+     K P+++EFYEYVEA+K+TGDPYVPAG
Sbjct: 538 DPLDGLYIGAHGLYTSEVIHLKRKFGQWKGGKESKKPTDIEFYEYVEAVKLTGDPYVPAG 597

Query: 600 QVAFRAKVGKRYQLPHKGIIPEEFGVIARYKGQGRLAEPGFQNPRWVDGELVILDGKYIK 659
           +VAFRAK+G+RY+LPHKG+IPEEFGVIARYKGQGRLA+PGF+NPRWVDGELVILDGKY+K
Sbjct: 598 KVAFRAKIGRRYELPHKGLIPEEFGVIARYKGQGRLADPGFRNPRWVDGELVILDGKYVK 657

Query: 660 GGPVVGFVYWAPEYHFLVFFNRLRLQ 685
           GGPVVGFVYWAPEYHF++FFNRLRLQ
Sbjct: 658 GGPVVGFVYWAPEYHFVMFFNRLRLQ 683

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546745|ref|XP_003541783.1| PREDICTED: protein EXECUTER 1, chloroplastic-like [Glycine max]

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 338/591 (57%), Positives = 412/591 (69%), Gaps = 30/591 (5%)

Query: 111 EWDWDRWKSHFDEVDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVM 170
           EWDW+RW++HF  VD+QE L+ ILKS+LG+A+  E+Y+DAA LKVAIA  AT D VG  +
Sbjct: 59  EWDWERWQNHFHVVDEQELLLDILKSRLGDALRLEDYEDAATLKVAIATVATKDTVGTAI 118

Query: 171 SNLNRAVVQERYEDAALLRDNAGAGLEN--GGI-----DIGNLVKEIGPYYRNGSGGFCW 223
           S+L RA+ +ERY DAA LRD AG GL     G+     D   L+  I P +         
Sbjct: 119 SHLKRAIEEERYSDAAFLRDEAGTGLVGWWAGMSKDINDPHGLIIRITPEH--------- 169

Query: 224 KKHFMACYYKEQLATAAAGVPLFEIFLTVNKKGEYQQQAVYLKRKGVFDDSSVVSSKASG 283
            ++    Y   QLAT+AAGVPLFE FLT NK GE++ Q VYLKR+  F      SSKA  
Sbjct: 170 GRYVARSYSPRQLATSAAGVPLFEFFLTKNKNGEFKSQVVYLKRREAFHTPPTTSSKALD 229

Query: 284 GTGRLNPPGSTEDKDDLLVVSAEDTEDGDESDDSSDLAEGLSGFQNILRDMIPGVRVKVL 343
              RL    S ED+ +L+V S ED E  D+ +D+SD +E + GFQN+L+D IPGV++KVL
Sbjct: 230 AAERLRSVESPEDRSELVVGSPEDPEVVDDRNDNSDPSEAMPGFQNVLKDTIPGVKMKVL 289

Query: 344 KVTAPGKVDRDFISKVIEQIMEEEDEE---------KDAEVENVESEDEDKDESDEERNE 394
           KVT P KVD D ISKVIEQI ++E  E         KD E EN E  D  K E+D   +E
Sbjct: 290 KVTTPDKVDNDTISKVIEQITDDEGNEDEDSDECAGKDNETENPELSD-IKTETD---DE 345

Query: 395 IEMDAGRGIIENEEEQTEVSVKVVVGGLVQKLPGNKPAKEFLRVPAKLEKKGRLSFSFSI 454
           IE+++     E  EEQ +++VKV+VGGLVQKLP +   +  LRVPAKLEK G+ SFS + 
Sbjct: 346 IELNSSVESFE-REEQNKIAVKVIVGGLVQKLPSSLTTRNLLRVPAKLEKTGQGSFSLTF 404

Query: 455 EKDSKRRDSGAKDLGSVDNKARLGSQRSIENVMLDLAKFIGREKIPLKVLKDLSELINLS 514
           EK + ++    K   S D   ++  Q S++ VM++LAK IGR K+P KVLKDL ELI+LS
Sbjct: 405 EKVANQQVGHGKGKPSSDKSTKIQRQNSVDGVMVNLAKLIGRGKVPSKVLKDLGELISLS 464

Query: 515 LSQAQNHQPLSGSTTFHRIETATSQDALNGLYIGVHGLRTSEVINLRRKFGQWQDDGGIK 574
           LS+A NH+ LSGST F RIE  TS D LNGLYIG HGL +SEVI LR ++GQWQ+DGG K
Sbjct: 465 LSRAWNHERLSGSTMFSRIEIPTSLDPLNGLYIGAHGLYSSEVIQLRCRYGQWQEDGGPK 524

Query: 575 NPSNLEFYEYVEAIKVTGDPYVPAGQVAFRAKVGKRYQLPHKGIIPEEFGVIARYKGQGR 634
            PS+LEF EYVEA+K+TGD YVP GQVAFRAKVGKRYQLP KGIIP+EFGVIARYKGQGR
Sbjct: 525 EPSDLEFCEYVEALKLTGDSYVPVGQVAFRAKVGKRYQLPLKGIIPKEFGVIARYKGQGR 584

Query: 635 LAEPGFQNPRWVDGELVILDGKYIKGGPVVGFVYWAPEYHFLVFFNRLRLQ 685
           LAEP F+NPRWVDGELVILDGKYIK G V+GF+Y  PE  FLV FNRLRLQ
Sbjct: 585 LAEPRFENPRWVDGELVILDGKYIKAGLVIGFMYLTPENPFLVLFNRLRLQ 635

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	685
TAIR|locus:2134168	684	EX1 "EXECUTER1" [Arabidopsis t	0.957	0.959	0.492	6.3e-156
TAIR|locus:2196889	651	EX2 "EXECUTER 2" [Arabidopsis	0.363	0.382	0.437	1.5e-77

TAIR|locus:2134168 EX1 "EXECUTER1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1520 (540.1 bits), Expect = 6.3e-156, P = 6.3e-156
 Identities = 331/672 (49%), Positives = 405/672 (60%)

Query:    23 SFTNSHNFLRVKRPSYPHPPPFP-ALCRCXXXXXXXXXXXXXXXR--RWDLVIQDAFKNA 79
             S T+S      KR  YPH  P P ALCRC                  RWD  IQD  K+A
Sbjct:    19 SATSSRLTPSSKRSFYPHRLPDPTALCRCSSSSGSNSSSSSSSDDNPRWDSAIQDVLKSA 78

Query:    80 VKLFDSFLKEYGAPQDDAVLXXXXXXXXXXXXWDWDRWKSHFDEVDDQERLVSILKSQLG 139
             +K FDS L  Y    +D               WDWDRWK HFD+VDDQ+RL+S+LKSQL 
Sbjct:    79 IKRFDSVLSWYATLDNDDGEQGSENVEKIDDDWDWDRWKKHFDQVDDQDRLLSVLKSQLN 138

Query:   140 NAVFKEEYDDXXXXXXXXXXXXTNDAVGRVMSNLNRAVVQERYEDAALLRDNAGAGLENG 199
              A+ +E+Y+D            TNDAVG+VMS   RA+++ERY+DA  LRD AGAGL   
Sbjct:   139 RAIKREDYEDAARLKVAIAATATNDAVGKVMSTFYRALLEERYKDAVYLRDKAGAGLVGW 198

Query:   200 GIDIGNLVKE-IGPYYR-NGSGGFCWKKHFMACYYKEQLATAAAGVPLFEIFLTVNKKGE 257
                I   VK+  G   +     G    ++    Y   QL+T+AAG PLFEIFLT++ KG 
Sbjct:   199 WSGISEDVKDPFGLIVQITAEHG----RYVARSYNPRQLSTSAAGAPLFEIFLTLDGKGN 254

Query:   258 YQQQAVYLKRKGVFDDSSVVSSKASGGTGR-LNPPGSTEDKDDLLVVXXXXXXXXXXXXX 316
             Y++QAVYLK K +F D   + S+     GR L  PG  ED  +L  V             
Sbjct:   255 YKKQAVYLKWKEIFPDVPTMPSRTLT-PGRFLTSPGRKEDTGNL-AVESSEDEESDNSDD 312

Query:   317 XXXXXXXXXGFQNILRDMIPGVRVKVLKVTAPGKVDRDFISKVIXXXXXXXXXXXXXXXX 376
                      GFQ+ LRDMIPGV+VKV+KVTAPG+VD+DFISKVI                
Sbjct:   313 DSDLLEESSGFQSFLRDMIPGVKVKVMKVTAPGRVDKDFISKVIEQIADEEDEENDLDIE 372

Query:   377 XXXXXXXXXXXXXXXXXXIEMDAGRG-IIENXXXXXXXXXXXXXXXXXXXXPGNKPAKEF 435
                               IE+++    II+N                     GN+P KE 
Sbjct:   373 DIDVEDDTKAEIDEKNADIELESVTDEIIDNNGGREIAVKFVIGDIVDRLS-GNQPLKES 431

Query:   436 LRVPAKLEKKGRLSFSFSIEKDSKRRDS-GAKDLGSVDNKARLGSQRSIENVMLDLAKFI 494
             LR PA LE     SF   +EKD   ++S G +    VD K    S+R IEN+M DLAK I
Sbjct:   432 LRSPANLESVENSSFYLRLEKDLNVKESKGVEGTTLVDGKGSRQSRRRIENIMGDLAKSI 491

Query:   495 GREK-IPLKVLKDLSELINLSLSQAQNHQPLSGSTTFHRIETATSQDALNGLYIGVHGLR 553
              +EK I +K+LKD+ EL++L+LSQAQN Q LSG T F RI+   S D L+GLYIG HGL 
Sbjct:   492 EKEKKISVKMLKDVGELLSLTLSQAQNRQQLSGLTKFRRIDVTPSLDPLDGLYIGAHGLY 551

Query:   554 TSEVINLRRKFGQWQDDGGIKNPSNLEFYEYVEAIKVTGDPYVPAGQVAFRAKVGKRYQL 613
             TSEVI+L+RKFGQW+     K P+++EFYEYVEA+K+TGDPYVPAG+VAFRAK+G+RY+L
Sbjct:   552 TSEVIHLKRKFGQWKGGKESKKPTDIEFYEYVEAVKLTGDPYVPAGKVAFRAKIGRRYEL 611

Query:   614 PHKGIIPEEFGVIARYKGQGRLAEPGFQNPRWVDGELVILDGKYIKGGPVVGFVYWAPEY 673
             PHKG+IPEEFGVIARYKGQGRLA+PGF+NPRWVDGELVILDGKY+KGGPVVGFVYWAPEY
Sbjct:   612 PHKGLIPEEFGVIARYKGQGRLADPGFRNPRWVDGELVILDGKYVKGGPVVGFVYWAPEY 671

Query:   674 HFLVFFNRLRLQ 685
             HF++FFNRLRLQ
Sbjct:   672 HFVMFFNRLRLQ 683

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0000304 "response to singlet oxygen" evidence=IGI

GO:0042651 "thylakoid membrane" evidence=IDA

GO:0000302 "response to reactive oxygen species" evidence=RCA

GO:0010039 "response to iron ion" evidence=RCA

GO:0055072 "iron ion homeostasis" evidence=RCA

GO:0010343 "singlet oxygen-mediated programmed cell death" evidence=IGI

TAIR|locus:2196889 EX2 "EXECUTER 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
 Identities = 112/256 (43%), Positives = 162/256 (63%)

Query:   434 EFLRVPAKLEKKGRLSFSFSIEKDSKRRDSGAKDLGSVDNKARLGSQRSIENVMLDLAKF 493
             E +RV A +    R SF   +   SKR     K+  S +    L +Q   + +  ++A+ 
Sbjct:   396 EIVRVSANIMDTERDSFILHVPGRSKRDIDTRKNRVSKEQVTALAAQGLSDLLPPEVAEA 455

Query:   494 IGREKIPLKVLKDLSELINLSLSQAQNHQPLSGSTTFHRIETATSQ-DALNGLYIGVHGL 552
                EK  LKV K + E++ L+++QAQ    LS  T F+RI T  S  D  +GLY+G  G 
Sbjct:   456 FWGEKASLKVSKHVHEIVKLAINQAQKGNHLSEYTAFNRIITPESNLDPFDGLYVGAFGP 515

Query:   553 RTSEVINLRRKFGQWQDDGGIKNPSNLEFYEYVEAIKVTGDPYVPAGQVAFRAKVGKRYQ 612
               +E++ L+RK+G+W D  G  N S++EF+EYVEA+K+TGDP VPAGQV FRA++G   +
Sbjct:   516 YGTEIVQLKRKYGRWDDAEG-SNSSDIEFFEYVEAVKLTGDPNVPAGQVTFRARIGNGSR 574

Query:   613 LPHKGIIPEEFGVIARYKGQGRLAEPGFQNPRWVDGELVILDGK----YIKGGPVVGFVY 668
             + + G+ PEE GV+A Y+GQG++A+ GF+ PRWV+G+L+ L+GK    Y+KG  + GF+Y
Sbjct:   575 MTNHGLFPEELGVLASYRGQGKIADFGFKKPRWVEGKLLKLNGKGMGPYVKGADL-GFLY 633

Query:   669 WAPEYHFLVFFNRLRL 684
               PE  FLV FNRLRL
Sbjct:   634 IGPEQSFLVLFNRLRL 649

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0000304 "response to singlet oxygen" evidence=IGI

GO:0042651 "thylakoid membrane" evidence=IDA

GO:0010343 "singlet oxygen-mediated programmed cell death" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93YW0	EXEC1_ARATH	No assigned EC number	0.5597	0.9883	0.9897	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XVII.123.1 hypothetical protein (676 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	685
pfam12014	138	pfam12014, DUF3506, Domain of unknown function (DU	4e-57
COG5177	769	COG5177, COG5177, Uncharacterized conserved protei	0.001

>gnl|CDD|192915 pfam12014, DUF3506, Domain of unknown function (DUF3506)

 Score =  189 bits (483), Expect = 4e-57
 Identities = 76/138 (55%), Positives = 96/138 (69%), Gaps = 6/138 (4%)

Query: 525 SGSTTFHRIE----TATSQDALNGLYIGVHGLRTSEVINLRRKFGQWQDDGGIKNPSNLE 580
            G TTF RI+    T T +D   GLY+G +     E + L +K GQW++D G K PS++E
Sbjct: 1   EGLTTFSRIDPELYTPTPEDPYRGLYVGAYSGHGCEFLLLLQKDGQWKEDDGSKEPSDIE 60

Query: 581 FYEYVEAIKVTGDPYVPAGQVAFRAKVGKRYQLP--HKGIIPEEFGVIARYKGQGRLAEP 638
           FYEYVEAIK+TGDP VP GQV FRAK+GK   +    +G+ PEE GVI   KGQG +A+P
Sbjct: 61  FYEYVEAIKLTGDPNVPRGQVTFRAKIGKGGLVRVAEEGLFPEELGVIRVVKGQGHIADP 120

Query: 639 GFQNPRWVDGELVILDGK 656
           GF+NPRWVDGEL++L GK
Sbjct: 121 GFRNPRWVDGELLLLSGK 138

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 131 to 148 amino acids in length. This domain has a conserved KLTGD sequence motif. Length = 138

>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function unknown]

 Score = 42.4 bits (99), Expect = 0.001
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 5/161 (3%)

Query: 256 GEYQQQAVYLKRKGVFDDSSVVSSKASGGTGRLNPPGSTEDKDDLLVVSAEDTEDGDESD 315
           G++    + +  +       + + +A+     L     +    D L   A + ED     
Sbjct: 290 GDFLSNKIIVNGQYEQTIREIFADRATKLELDLQTVFESNMNRDTLDEYAPEGEDLRSDY 349

Query: 316 DSSDLAEGLSGFQNILRDMIPGVRVKVLKVTAPGKVDRDFISKVIEQIMEEEDEEKDAEV 375
           D     +GL+  +      +PG R +  K  A  K    + +K  E   EE+ +  D E 
Sbjct: 350 DEDFEYDGLTTVRIDDHGFLPG-REQTSKKAAVPKGTSFYQAKWAEDEEEEDGQCNDEES 408

Query: 376 ENVESEDEDKDESDEER----NEIEMDAGRGIIENEEEQTE 412
                +D+D  E+D E      E  +D   G  E   E+ E
Sbjct: 409 TMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEE 449

Length = 769

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	685
PF12014	134	DUF3506: Domain of unknown function (DUF3506); Int	100.0
PF02151	36	UVR: UvrB/uvrC motif; InterPro: IPR001943 During t	97.07
PF02151	36	UVR: UvrB/uvrC motif; InterPro: IPR001943 During t	93.26
COG3880	176	Modulator of heat shock repressor CtsR, McsA [Sign	93.14
PRK07883	557	hypothetical protein; Validated	85.62
PRK14668	577	uvrC excinuclease ABC subunit C; Provisional	85.25
PRK14671	621	uvrC excinuclease ABC subunit C; Provisional	84.83
PRK12306	519	uvrC excinuclease ABC subunit C; Reviewed	83.29
TIGR00631	655	uvrb excinuclease ABC, B subunit. This family is b	83.18
PRK05298	652	excinuclease ABC subunit B; Provisional	83.02
PRK14666	694	uvrC excinuclease ABC subunit C; Provisional	82.9
PRK14667	567	uvrC excinuclease ABC subunit C; Provisional	82.49
PRK00558	598	uvrC excinuclease ABC subunit C; Validated	82.46
TIGR00194	574	uvrC excinuclease ABC, C subunit. This family cons	81.23
PRK14670	574	uvrC excinuclease ABC subunit C; Provisional	81.15
PRK14672	691	uvrC excinuclease ABC subunit C; Provisional	80.7
PRK14669	624	uvrC excinuclease ABC subunit C; Provisional	80.18

>PF12014 DUF3506: Domain of unknown function (DUF3506); InterPro: IPR021894 This presumed domain is functionally uncharacterised

Probab=100.00  E-value=5.2e-52  Score=385.52  Aligned_cols=127  Identities=46%  Similarity=0.879  Sum_probs=118.2

Q ss_pred             CCceeeeecc----CCCCCCCCCceEeeccCCCCceEEEEEeecCCcCCCCCCCCCCCcccceEEEEEEeeCCCCCCCce
Q 005662          525 SGSTTFHRIE----TATSQDALNGLYIGVHGLRTSEVINLRRKFGQWQDDGGIKNPSNLEFYEYVEAIKVTGDPYVPAGQ  600 (685)
Q Consensus       525 ~~~tty~rI~----~Pt~~~P~~GIwVGdYg~HG~EfL~l~q~~g~~~~d~~~~~~~~~~~~~~LEAVKLTGDpNVPrGe  600 (685)
                      +++|||+||+    +||+.|||+|||||+||+||||||+|+|++|+|++++.+.+.++.+|++|||||||||||||||||
T Consensus         1 ~~~ttfstl~p~lytpt~~~P~~GiwVGdyg~hG~Efl~l~q~~~~~~~~~~~~~~~~~~~~~~leAiKLTGDpNVPrGe   80 (134)
T PF12014_consen    1 EGVTTFSTLDPELYTPTPEKPFRGIWVGDYGPHGCEFLLLHQPDGQWDEDDGSKEPSDREFRGRLEAIKLTGDPNVPRGE   80 (134)
T ss_pred             CCceEEEecChhccCCCCCCCccceEEcccCCCCeEEEEEEccCCCccccccccccccccccceEEEEEecCCCCCcCcc
Confidence            5789999999    799999999999999999999999999999999988776777889999999999999999999999


Q ss_pred             eEEEEE-cCCCcCCC--CCCCCCCcccceeEEeccceecCCCCCCCCceeceEEEEeC
Q 005662          601 VAFRAK-VGKRYQLP--HKGIIPEEFGVIARYKGQGRLAEPGFQNPRWVDGELVILDG  655 (685)
Q Consensus       601 vTFrA~-ig~~~~l~--~~g~~Peelgv~aRykgqG~VA~~GF~np~wIdgeLilis~  655 (685)
                      |||+|+ ||++++++  +.+++|   | ++|||||||||++||+|++||+|||++|||
T Consensus        81 vtF~A~DiG~~~~i~~a~~~~f~---G-~r~vk~~G~vA~~GF~~~~~id~eLilis~  134 (134)
T PF12014_consen   81 VTFRADDIGPGGRIRVAHEGPFP---G-ARRVKGQGHVAEPGFRNDKWIDGELILISG  134 (134)
T ss_pred             EEEEecccCCCcccccccCCCCC---c-eEEEecCCeEcCcCcCCCcceeeEEEEecC
Confidence            999999 99999987  555555   4 377999999999999999999999999986

This domain is found in eukaryotes. This domain is typically between 131 to 148 amino acids in length. This domain has a conserved KLTGD sequence motif.

>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=97.07  E-value=0.00094  Score=50.24  Aligned_cols=34  Identities=35%  Similarity=0.544  Sum_probs=29.4

Q ss_pred             hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662          128 ERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA  161 (685)
Q Consensus       128 e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~  161 (685)
                      +.++..|+.+|..|++.+||+.|++||+.|.++.
T Consensus         1 ~~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~   34 (36)
T PF02151_consen    1 EKLIKELEEKMEEAVENEDFEKAARLRDQIKALK   34 (36)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            3567788999999999999999999999998775

UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.

>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=93.26  E-value=0.084  Score=39.82  Aligned_cols=26  Identities=35%  Similarity=0.528  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005662          166 VGRVMSNLNRAVVQERYEDAALLRDN  191 (685)
Q Consensus       166 Vgrim~~L~~AI~EERY~DAA~lRD~  191 (685)
                      +-.+...|+.|+++++|+.|++|||.
T Consensus         4 i~~l~~~m~~a~~~~dfE~Aa~~Rd~   29 (36)
T PF02151_consen    4 IKELEEKMEEAVENEDFEKAARLRDQ   29 (36)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            45678899999999999999999996

UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.

>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]

Probab=93.14  E-value=0.092  Score=52.40  Aligned_cols=35  Identities=26%  Similarity=0.403  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHhhccchhHHHHHHHHHHHHhcCC
Q 005662          130 LVSILKSQLGNAVFKEEYDDAARLKVAIAAAATND  164 (685)
Q Consensus       130 la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~~~D  164 (685)
                      =...|+.-|+++|+.|||++||-+||.|.++..++
T Consensus       137 ~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~  171 (176)
T COG3880         137 KIIALKEALQDLIEREEFEEAAVIRDQIRALKAKN  171 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            35678999999999999999999999999888654

>PRK07883 hypothetical protein; Validated

Probab=85.62  E-value=0.94  Score=52.01  Aligned_cols=35  Identities=23%  Similarity=0.458  Sum_probs=31.5

Q ss_pred             hhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662          127 QERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA  161 (685)
Q Consensus       127 ~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~  161 (685)
                      ...+...|+.+|+.|.++.+||.||++|+.|.++.
T Consensus       404 ~~~~~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~  438 (557)
T PRK07883        404 DDAVLAALRARIDRLAAAERFEEAARLRDRLAALL  438 (557)
T ss_pred             cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            34688999999999999999999999999988765

>PRK14668 uvrC excinuclease ABC subunit C; Provisional

Probab=85.25  E-value=1.4  Score=51.08  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=31.9

Q ss_pred             hhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662          127 QERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA  161 (685)
Q Consensus       127 ~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~  161 (685)
                      ...+...|+.+|+.|.++.+||.||+||+.|.++.
T Consensus       197 ~~~~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~  231 (577)
T PRK14668        197 TGVLADPLRREMEAAAQAQEFERAANLRDRLEAVE  231 (577)
T ss_pred             cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999998855

>PRK14671 uvrC excinuclease ABC subunit C; Provisional

Probab=84.83  E-value=1.5  Score=51.31  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=32.5

Q ss_pred             hhhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662          126 DQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA  161 (685)
Q Consensus       126 ~~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~  161 (685)
                      ....+...|+.+|+.|.++.+||.||++|+.|.++.
T Consensus       212 ~~~~l~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~  247 (621)
T PRK14671        212 KTSALIRSLTEEMQRAAAELKFEEAAELKDQIESLK  247 (621)
T ss_pred             CcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            356789999999999999999999999999998765

>PRK12306 uvrC excinuclease ABC subunit C; Reviewed

Probab=83.29  E-value=1.4  Score=50.64  Aligned_cols=34  Identities=15%  Similarity=0.343  Sum_probs=31.3

Q ss_pred             hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662          128 ERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA  161 (685)
Q Consensus       128 e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~  161 (685)
                      ..++..|+.+|+.|.++.+||.||++|+.|.++.
T Consensus       191 ~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~  224 (519)
T PRK12306        191 DELIEKLEEEMAEKAKNQQFERALVIRDEINAIE  224 (519)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            5688899999999999999999999999988765

>TIGR00631 uvrb excinuclease ABC, B subunit

Probab=83.18  E-value=1.3  Score=51.88  Aligned_cols=36  Identities=25%  Similarity=0.432  Sum_probs=32.6

Q ss_pred             hhhhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 005662          125 DDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAA  160 (685)
Q Consensus       125 e~~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~  160 (685)
                      ++.+.+...|+.+|+.|+++.+||+||+||+.|.++
T Consensus       619 ~~~~~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L  654 (655)
T TIGR00631       619 KELKKLIKQLEKEMKQAARNLEFEEAARLRDEILEL  654 (655)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            566788899999999999999999999999999875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)

>PRK05298 excinuclease ABC subunit B; Provisional

Probab=83.02  E-value=1.3  Score=51.53  Aligned_cols=38  Identities=29%  Similarity=0.435  Sum_probs=34.0

Q ss_pred             hhhhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhc
Q 005662          125 DDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAAT  162 (685)
Q Consensus       125 e~~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~~  162 (685)
                      +..+.+...|+.+|..|+++.+||+||++|+.|.++..
T Consensus       609 ~~~~~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~  646 (652)
T PRK05298        609 KELEKLIKELEKQMKEAAKNLEFEEAARLRDEIKELKE  646 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            45667889999999999999999999999999998763

>PRK14666 uvrC excinuclease ABC subunit C; Provisional

Probab=82.90  E-value=1.4  Score=52.15  Aligned_cols=35  Identities=29%  Similarity=0.346  Sum_probs=31.8

Q ss_pred             hhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662          127 QERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA  161 (685)
Q Consensus       127 ~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~  161 (685)
                      ...+...|+.+|+.|+++.+||.||+||+.|.++.
T Consensus       199 ~~~l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~  233 (694)
T PRK14666        199 SGELVDALRTEMEAASEALEFERAAVLRDQIRAVE  233 (694)
T ss_pred             CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999998765

>PRK14667 uvrC excinuclease ABC subunit C; Provisional

Probab=82.49  E-value=1.5  Score=50.84  Aligned_cols=35  Identities=17%  Similarity=0.176  Sum_probs=31.6

Q ss_pred             hhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662          127 QERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA  161 (685)
Q Consensus       127 ~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~  161 (685)
                      ...+...|+.+|+.|.++.+||.||++|+.|.++.
T Consensus       197 ~~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~  231 (567)
T PRK14667        197 VKEVLPELYDKIEEYSQKLMFEKAAVIRDQILALE  231 (567)
T ss_pred             cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            35688899999999999999999999999998765

>PRK00558 uvrC excinuclease ABC subunit C; Validated

Probab=82.46  E-value=1.6  Score=50.81  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=31.0

Q ss_pred             hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662          128 ERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA  161 (685)
Q Consensus       128 e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~  161 (685)
                      ..+...|+.+|+.|+++.+||.||+||+.|.++.
T Consensus       201 ~~~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~  234 (598)
T PRK00558        201 DEVLKELEEKMEEASENLEFERAARYRDQIQALR  234 (598)
T ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence            4588889999999999999999999999998765

>TIGR00194 uvrC excinuclease ABC, C subunit

Probab=81.23  E-value=1.8  Score=50.24  Aligned_cols=35  Identities=26%  Similarity=0.417  Sum_probs=31.9

Q ss_pred             hhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662          127 QERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA  161 (685)
Q Consensus       127 ~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~  161 (685)
                      ...+...|+.+|+.|.++.+||.||++|+.|.++.
T Consensus       192 ~~~~~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~  226 (574)
T TIGR00194       192 PQEVIKELEQKMEKASENLEFEEAARIRDQIAAVR  226 (574)
T ss_pred             cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            36788889999999999999999999999998765

This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.

>PRK14670 uvrC excinuclease ABC subunit C; Provisional

Probab=81.15  E-value=1.8  Score=50.23  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=32.0

Q ss_pred             hhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662          127 QERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA  161 (685)
Q Consensus       127 ~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~  161 (685)
                      ...++..|+.+|+.|.++.+||.||++|+.|.++.
T Consensus       175 ~~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~  209 (574)
T PRK14670        175 ISKLLSQIEIKMKEAIQKEDFEAAIKLKETKRSLI  209 (574)
T ss_pred             cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            46788889999999999999999999999998875

>PRK14672 uvrC excinuclease ABC subunit C; Provisional

Probab=80.70  E-value=2  Score=50.97  Aligned_cols=35  Identities=29%  Similarity=0.397  Sum_probs=31.6

Q ss_pred             hhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662          127 QERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA  161 (685)
Q Consensus       127 ~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~  161 (685)
                      ...+...|+.+|+.|.++.+||.||++|+.|.++.
T Consensus       203 ~~~ll~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~  237 (691)
T PRK14672        203 IDATVARLEKRMKRAVRQEAFEAAARIRDDIQAIR  237 (691)
T ss_pred             cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            45688888999999999999999999999998765

>PRK14669 uvrC excinuclease ABC subunit C; Provisional

Probab=80.18  E-value=2.1  Score=50.18  Aligned_cols=35  Identities=17%  Similarity=0.333  Sum_probs=31.7

Q ss_pred             hhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662          127 QERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA  161 (685)
Q Consensus       127 ~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~  161 (685)
                      ...+...|+.+|+.|.++.+||.||++|+.|.++.
T Consensus       201 ~~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~  235 (624)
T PRK14669        201 HSDLARSLRARMEAAALEMQFELAAKYRDLITTVE  235 (624)
T ss_pred             CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            35788899999999999999999999999998765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	685
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.1 bits (168), Expect = 3e-12
 Identities = 89/675 (13%), Positives = 168/675 (24%), Gaps = 253/675 (37%)

Query: 69  DLVIQ-DAFKNAVKLFDSFLKEYGAPQDDAVLEEEKRDESGEDEWDWDRWKSHFDEVDDQ 127
            +++  DA    ++LF + L           +EE  R       +     K+   +    
Sbjct: 53  HIIMSKDAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRINYK---FLMSPIKTEQRQPSMM 108

Query: 128 ERLVSILKSQL--GNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDA 185
            R+    + +L   N VF +   + +RL+                  L +A+++      
Sbjct: 109 TRMYIEQRDRLYNDNQVFAK--YNVSRLQP--------------YLKLRQALLE------ 146

Query: 186 ALLRDNAGAGLENGGIDIGNLVKEIGPYYRNGSGGFCWKKHFMACYYKEQLATAAA---- 241
             LR      ++                   GSG             K  +A        
Sbjct: 147 --LRPAKNVLIDGVL----------------GSG-------------KTWVALDVCLSYK 175

Query: 242 --GVPLFEIF-LTVNKKGE-----YQQQAVYLKRKGVFDDSSVVSSKASGGTGRLNPPGS 293
                 F+IF L +             Q +  +         +  +  S      N    
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ---------IDPNWTSRSDHSSNIKLR 226

Query: 294 TED--------------KDDLLVVSAEDTEDGDESDDSSDLAEGLSGFQNILRDMIPGVR 339
                            ++ LLV+            +  + A+  + F          + 
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVL-----------LNVQN-AKAWNAF---------NLS 265

Query: 340 VKVLKVTAPGKVDRDFISKVIEQIMEEEDEEKDAEVENVESEDEDKDESDEERNEIEMDA 399
            K+L  T                        +  +V +  S       S +  +      
Sbjct: 266 CKILLTT------------------------RFKQVTDFLSAATTTHISLDHHSM----- 296

Query: 400 GRGIIENEEEQTEVSVKVVVGGLVQKLP-----GNKP-----AKEFLRVPAKLEKKGRLS 449
              +    +E   + +K +     Q LP      N P       E +R     +      
Sbjct: 297 --TL--TPDEVKSLLLKYL-DCRPQDLPREVLTTN-PRRLSIIAESIR-----DGLATWD 345

Query: 450 FSFSIEKDSKRR--DSGAKDLGSVDNKARLGSQRSIENVMLDLAKFIGREKIPLKVLK-- 505
               +  D      +S    L   + +               L+ F     IP  +L   
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMF----------DRLSVFPPSAHIPTILLSLI 395

Query: 506 -----------DLSELINLSLSQAQN--------------HQPLSGSTTFHR--IE---- 534
                       +++L   SL + Q                  L      HR  ++    
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 535 ------TATSQDALNG---LYIGVH--GLRTSEVINLRRK------FGQ---------WQ 568
                        L+     +IG H   +   E + L R       F +         W 
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515

Query: 569 DDGGIKNP-SNLEFYE---------YVEAIKVTGDPYVP-AGQVAFRAKVGKRYQL---- 613
             G I N    L+FY+         Y   +    D ++P   +    +K     ++    
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD-FLPKIEENLICSKYTDLLRIALMA 574

Query: 614 PHKGIIPEEFGVIAR 628
             + I  E    + R
Sbjct: 575 EDEAIFEEAHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	685
1e52_A	63	Excinuclease ABC subunit; DNA excision repair, UVR	95.96
2d7d_A	661	Uvrabc system protein B; helicase, protein-DNA-ADP	87.74
1e52_A	63	Excinuclease ABC subunit; DNA excision repair, UVR	83.44

>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*

Probab=87.74  E-value=0.3  Score=54.71  Aligned_cols=37  Identities=14%  Similarity=0.315  Sum_probs=28.4

Q ss_pred             hhhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhc
Q 005662          126 DQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAAT  162 (685)
Q Consensus       126 ~~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~~  162 (685)
                      +...+...|+.+|+.|+++++|+.||+||+.|.++..
T Consensus       623 ~~~~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~  659 (661)
T 2d7d_A          623 ERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKA  659 (661)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh
Confidence            4566778889999999999999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	685
d1e52a_	56	C-terminal UvrC-binding domain of UvrB {Escherichi	95.63
d1e52a_	56	C-terminal UvrC-binding domain of UvrB {Escherichi	80.46

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.0043  Score=48.45  Aligned_cols=36  Identities=11%  Similarity=0.195  Sum_probs=32.4

Q ss_pred             hhhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662          126 DQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA  161 (685)
Q Consensus       126 ~~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~  161 (685)
                      +-+.+...|+.+|+.|++..+|++||+|||.|.++.
T Consensus        14 el~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~   49 (56)
T d1e52a_          14 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR   49 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            446778889999999999999999999999998775

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

Probab=80.46  E-value=0.4  Score=37.02  Aligned_cols=26  Identities=19%  Similarity=0.322  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005662          166 VGRVMSNLNRAVVQERYEDAALLRDN  191 (685)
Q Consensus       166 Vgrim~~L~~AI~EERY~DAA~lRD~  191 (685)
                      +-.+..+|+.|.++..|+.||+|||.
T Consensus        19 i~~Le~~M~~aa~~l~FE~AA~~RD~   44 (56)
T d1e52a_          19 IHELEGLMMQHAQNLEFEEAAQIRDQ   44 (56)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            34667889999999999999999996