Citrus Sinensis ID: 005688
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 683 | 2.2.26 [Sep-21-2011] | |||||||
| Q6NMM8 | 469 | Probable glucuronoxylan g | no | no | 0.424 | 0.618 | 0.254 | 1e-19 | |
| Q9FZJ1 | 412 | Probable beta-1,4-xylosyl | no | no | 0.393 | 0.652 | 0.255 | 1e-18 | |
| Q10SX7 | 427 | Probable glucuronosyltran | no | no | 0.361 | 0.578 | 0.263 | 2e-18 | |
| Q940Q8 | 415 | Probable beta-1,4-xylosyl | no | no | 0.374 | 0.616 | 0.247 | 3e-18 | |
| Q6H4N0 | 434 | Probable glucuronosyltran | no | no | 0.392 | 0.617 | 0.254 | 6e-18 | |
| Q8S1X7 | 417 | Probable glucuronosyltran | no | no | 0.393 | 0.645 | 0.249 | 4e-17 | |
| Q7XLG3 | 420 | Probable glucuronosyltran | no | no | 0.401 | 0.652 | 0.244 | 5e-17 | |
| Q8S1X8 | 415 | Probable glucuronosyltran | no | no | 0.404 | 0.665 | 0.230 | 1e-16 | |
| Q9ZUV3 | 448 | Probable glucuronoxylan g | no | no | 0.363 | 0.553 | 0.268 | 2e-16 | |
| Q33AH8 | 417 | Probable glucuronosyltran | no | no | 0.368 | 0.604 | 0.241 | 3e-16 |
| >sp|Q6NMM8|F8H_ARATH Probable glucuronoxylan glucuronosyltransferase F8H OS=Arabidopsis thaliana GN=F8H PE=2 SV=1 | Back alignment and function desciption |
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Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/370 (25%), Positives = 160/370 (43%), Gaps = 80/370 (21%)
Query: 329 IPINANITGNLVNLNAVVKKKRPLLYVYDLPPEFNSLLLEGRHYKLECVNRIYNEKNETL 388
+P A I + + ++ +YVYDLP +N + C +
Sbjct: 87 LPSRALIESSAIKTTSIGLFTGMKIYVYDLPASYNDDWVTASD---RCASH--------- 134
Query: 389 WTDMLYGSQMAFYESILASPHRTLNGEEADFFFVPVLDSCIITRADDAPHLSAQEHRGLR 448
L+ +++A + ++L+S RTL+ +EAD+FFVPV SC + ++ P LS R L
Sbjct: 135 ----LFAAEVAIHRALLSSDVRTLDPDEADYFFVPVYVSCNFSTSNGFPSLS--HARSLL 188
Query: 449 SSLTLEFYKKAYEHIIEHYPYWNRTSGRDHIWFFSWDEGACY-----------APKEIWN 497
SS A + + +HYP+WNR+ G DH++ S D GAC+ PK +
Sbjct: 189 SS--------AVDFLSDHYPFWNRSQGSDHVFVASHDFGACFHAMEDMAIEEGIPKFMKR 240
Query: 498 SMMLVHWGNTNSKHNHSTTAYWADNWDRISSSRRGNHSCFDPEKDLVLPAWKAPDAFVLR 557
S++L +G + H C + E +V+P + P++ ++
Sbjct: 241 SIILQTFGV------------------------KYKHPCQEVEH-VVIPPYIPPES--VQ 273
Query: 558 SKLWASPREKRKTLFYFNGNLGSAYPNGRPESSYSMGVRQKLAEEYGSSPNKEGKLGKQH 617
+ +P R+ ++ F P YS GVR + +++G + L +
Sbjct: 274 KAIEKAPVNGRRDIWAFFRGKMEVNPKNISGRFYSKGVRTAILKKFGG--RRRFYLNRH- 330
Query: 618 AEDVIVTSLRSENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQ--CKFIFST 674
R Y ++ SVFC G WS R+ +S + GC+PVVI + FS
Sbjct: 331 ---------RFAGYRSEIVRSVFCLCPLGWAPWSPRLVESAVLGCVPVVIADGIQLPFSE 381
Query: 675 TLC-PELEIS 683
T+ PE+ ++
Sbjct: 382 TVQWPEISLT 391
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Involved in the synthesis of the hemicellulose glucuronoxylan, a major component of secondary cell walls. Probably involved in the synthesis of the glycosyl sequence at the glucuronoxylan reducing end. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: - |
| >sp|Q9FZJ1|IRX10_ARATH Probable beta-1,4-xylosyltransferase IRX10 OS=Arabidopsis thaliana GN=IRX10 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q10SX7|GT31_ORYSJ Probable glucuronosyltransferase Os03g0107900 OS=Oryza sativa subsp. japonica GN=Os03g0107900 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q940Q8|IX10L_ARATH Probable beta-1,4-xylosyltransferase IRX10L OS=Arabidopsis thaliana GN=IRX10L PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6H4N0|GT21_ORYSJ Probable glucuronosyltransferase Os02g0520750 OS=Oryza sativa subsp. japonica GN=Os02g0520750 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8S1X7|GT15_ORYSJ Probable glucuronosyltransferase Os01g0926700 OS=Oryza sativa subsp. japonica GN=Os01g0926700 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7XLG3|GT42_ORYSJ Probable glucuronosyltransferase Os04g0398600 OS=Oryza sativa subsp. japonica GN=Os04g0398600 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8S1X8|GT14_ORYSJ Probable glucuronosyltransferase Os01g0926600 OS=Oryza sativa subsp. japonica GN=Os01g0926600 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9ZUV3|IRX7_ARATH Probable glucuronoxylan glucuronosyltransferase IRX7 OS=Arabidopsis thaliana GN=IRX7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q33AH8|GT101_ORYSJ Probable glucuronosyltransferase GUT1 OS=Oryza sativa subsp. japonica GN=GUT1 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 683 | ||||||
| 224090294 | 793 | predicted protein [Populus trichocarpa] | 0.973 | 0.838 | 0.773 | 0.0 | |
| 297739695 | 822 | unnamed protein product [Vitis vinifera] | 0.969 | 0.805 | 0.772 | 0.0 | |
| 225441752 | 794 | PREDICTED: uncharacterized protein LOC10 | 0.969 | 0.833 | 0.772 | 0.0 | |
| 42566010 | 793 | exostosin family protein [Arabidopsis th | 0.972 | 0.837 | 0.742 | 0.0 | |
| 297820564 | 792 | exostosin family protein [Arabidopsis ly | 0.970 | 0.837 | 0.742 | 0.0 | |
| 42572713 | 791 | exostosin family protein [Arabidopsis th | 0.969 | 0.836 | 0.740 | 0.0 | |
| 449501885 | 859 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.972 | 0.772 | 0.731 | 0.0 | |
| 449437619 | 791 | PREDICTED: uncharacterized protein LOC10 | 0.972 | 0.839 | 0.731 | 0.0 | |
| 147846684 | 1363 | hypothetical protein VITISV_016911 [Viti | 0.966 | 0.484 | 0.719 | 0.0 | |
| 356500491 | 795 | PREDICTED: uncharacterized protein LOC10 | 0.967 | 0.831 | 0.749 | 0.0 |
| >gi|224090294|ref|XP_002308967.1| predicted protein [Populus trichocarpa] gi|222854943|gb|EEE92490.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1119 bits (2895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/667 (77%), Positives = 589/667 (88%), Gaps = 2/667 (0%)
Query: 1 MISIEKWRFSWTLVATVASVLTLVSVVHLFLFPLVPSFDYFTARQQIQNSCVPIKESAER 60
MI+I KW+ SW+L+AT+AS++ LVSVVHLFLFP+VPSFD F+ Q+Q+SC P ES +
Sbjct: 1 MITISKWKCSWSLMATIASIVALVSVVHLFLFPVVPSFDPFSV-WQVQDSCGPNNESVDG 59
Query: 61 VTNRVWENSPPQLNLDHRFPADLHNAVVYRNAPWKAEIGRWLSGCDSVAKEVDLVEMIGG 120
T N P L+L+H+FPADLH AV YRNAPWKAEIGRWLSGCD+V KEV +VE I G
Sbjct: 60 RTGHDPGNLQPVLDLEHKFPADLHRAVFYRNAPWKAEIGRWLSGCDAVTKEVSVVETISG 119
Query: 121 KSCKSDCSGQGVCNHELGQCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICPTH 180
+SCK+DCSGQGVCN+ELGQCRCFHGF G+GCSER+H +CN+PK+PELPYGRWVVSIC H
Sbjct: 120 RSCKNDCSGQGVCNYELGQCRCFHGFSGEGCSERLHLECNYPKSPELPYGRWVVSICSAH 179
Query: 181 CDTTRAMCFCGEGTKYPNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPG 240
CD TRAMCFCGEGTKYPNRP AE CGFQ++LPS+ GAP+ DWAK DLD I+TTN SK G
Sbjct: 180 CDPTRAMCFCGEGTKYPNRPAAETCGFQLSLPSEIGAPRQVDWAKPDLD-IYTTNKSKLG 238
Query: 241 WCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPVSSTCVNQCSGHGHCRGGFCQCDSG 300
WCNVDP E YA KV+FKEECDCKYD L G+FCEVPV +C+NQCSGHGHCRGGFCQC +G
Sbjct: 239 WCNVDPAEGYANKVKFKEECDCKYDCLSGRFCEVPVQCSCINQCSGHGHCRGGFCQCANG 298
Query: 301 WYGVDCSIPSVMSSMSEWPQWLRPAHIDIPINANITGNLVNLNAVVKKKRPLLYVYDLPP 360
WYG DCSIPSV SS+ EWP+WLRPA +D+P NA++TG LV+LNAVVKKKRPL+Y+YDLPP
Sbjct: 299 WYGTDCSIPSVTSSVREWPRWLRPAQLDVPDNAHLTGKLVDLNAVVKKKRPLIYIYDLPP 358
Query: 361 EFNSLLLEGRHYKLECVNRIYNEKNETLWTDMLYGSQMAFYESILASPHRTLNGEEADFF 420
+FNSLLLEGRH+K ECVNR+YN+ N T+WTD LYG+QMA YESILASP+RTLNGEEADFF
Sbjct: 359 KFNSLLLEGRHFKFECVNRLYNDNNATIWTDQLYGAQMALYESILASPYRTLNGEEADFF 418
Query: 421 FVPVLDSCIITRADDAPHLSAQEHRGLRSSLTLEFYKKAYEHIIEHYPYWNRTSGRDHIW 480
FVPVLDSCIITRADDAPHLS ++H GLRSSLTLEFY+KAY+HI+EHYP+WNR+SGRDH+W
Sbjct: 419 FVPVLDSCIITRADDAPHLSMEQHLGLRSSLTLEFYRKAYDHIVEHYPFWNRSSGRDHLW 478
Query: 481 FFSWDEGACYAPKEIWNSMMLVHWGNTNSKHNHSTTAYWADNWDRISSSRRGNHSCFDPE 540
FSWDEGACYAPKEIWNSMM+VHWGNTNSKHNHSTTAYWADNWD+ISS RRG H CFDP+
Sbjct: 479 SFSWDEGACYAPKEIWNSMMVVHWGNTNSKHNHSTTAYWADNWDKISSDRRGKHPCFDPD 538
Query: 541 KDLVLPAWKAPDAFVLRSKLWASPREKRKTLFYFNGNLGSAYPNGRPESSYSMGVRQKLA 600
KDLVLPAWK PD L +KLWA P EKRKTLFYFNGNLG AY NGRPE+ YSMG+RQKLA
Sbjct: 539 KDLVLPAWKRPDVNALSTKLWARPLEKRKTLFYFNGNLGPAYLNGRPEALYSMGIRQKLA 598
Query: 601 EEYGSSPNKEGKLGKQHAEDVIVTSLRSENYHEDLSSSVFCGVLPGDGWSGRMEDSILQG 660
EE+GS+PNK+G LGKQHAE+VIV+ LRSE+YHEDL+SSVFCGV+PGDGWSGRMEDSILQG
Sbjct: 599 EEFGSTPNKDGNLGKQHAENVIVSPLRSESYHEDLASSVFCGVMPGDGWSGRMEDSILQG 658
Query: 661 CIPVVIQ 667
CIPVVIQ
Sbjct: 659 CIPVVIQ 665
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739695|emb|CBI29877.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225441752|ref|XP_002277596.1| PREDICTED: uncharacterized protein LOC100267584 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|42566010|ref|NP_191322.3| exostosin family protein [Arabidopsis thaliana] gi|44917463|gb|AAS49056.1| At3g57630 [Arabidopsis thaliana] gi|46931284|gb|AAT06446.1| At3g57630 [Arabidopsis thaliana] gi|332646159|gb|AEE79680.1| exostosin family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297820564|ref|XP_002878165.1| exostosin family protein [Arabidopsis lyrata subsp. lyrata] gi|297324003|gb|EFH54424.1| exostosin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|42572713|ref|NP_974452.1| exostosin family protein [Arabidopsis thaliana] gi|110740929|dbj|BAE98560.1| hypothetical protein [Arabidopsis thaliana] gi|332646160|gb|AEE79681.1| exostosin family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449501885|ref|XP_004161484.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101226446 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449437619|ref|XP_004136589.1| PREDICTED: uncharacterized protein LOC101206674 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|147846684|emb|CAN80640.1| hypothetical protein VITISV_016911 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356500491|ref|XP_003519065.1| PREDICTED: uncharacterized protein LOC100783624 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 683 | ||||||
| TAIR|locus:2076691 | 793 | AT3G57630 "AT3G57630" [Arabido | 0.972 | 0.837 | 0.727 | 1.7e-295 | |
| TAIR|locus:2172676 | 469 | F8H "AT5G22940" [Arabidopsis t | 0.204 | 0.298 | 0.307 | 1.3e-17 | |
| TAIR|locus:2159198 | 415 | GUT1 "AT5G61840" [Arabidopsis | 0.168 | 0.277 | 0.323 | 8.1e-16 | |
| TAIR|locus:2016004 | 412 | GUT2 "AT1G27440" [Arabidopsis | 0.153 | 0.254 | 0.333 | 3.1e-14 | |
| TAIR|locus:2046163 | 448 | FRA8 "FRAGILE FIBER 8" [Arabid | 0.139 | 0.212 | 0.336 | 9.4e-13 | |
| UNIPROTKB|P24821 | 2201 | TNC "Tenascin" [Homo sapiens ( | 0.281 | 0.087 | 0.288 | 8.1e-08 | |
| ZFIN|ZDB-GENE-030804-1 | 1350 | tnr "tenascin R (restrictin, j | 0.074 | 0.037 | 0.403 | 9.3e-07 | |
| MGI|MGI:101922 | 2110 | Tnc "tenascin C" [Mus musculus | 0.281 | 0.090 | 0.278 | 1.5e-06 | |
| UNIPROTKB|P10039 | 1808 | TNC "Tenascin" [Gallus gallus | 0.253 | 0.095 | 0.269 | 3.3e-06 | |
| ZFIN|ZDB-GENE-980526-104 | 1811 | tnc "tenascin C" [Danio rerio | 0.256 | 0.096 | 0.279 | 3.4e-06 |
| TAIR|locus:2076691 AT3G57630 "AT3G57630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2837 (1003.7 bits), Expect = 1.7e-295, P = 1.7e-295
Identities = 485/667 (72%), Positives = 553/667 (82%)
Query: 1 MISIEKWRFSWXXXXXXXXXXXXXXXXHLFLFPLVPSFDYFTARQQIQNSCVPIKESAER 60
M S +KW+FSW HLFL P+VPSFD T RQ QN C P ES +
Sbjct: 1 MFSHQKWKFSWSQIATVASVIVLVSLVHLFLGPVVPSFDSITVRQA-QNLCGPSNESISQ 59
Query: 61 VTNRVWENSPPQLNLDHRFPADLHNAVVYRNAPWKAEIGRWLSGCDSVAKEVDLVEMIGG 120
VT S + D RFPAD H AVVYRNA WKAEIG+WLS CD+VAKEVD++E IGG
Sbjct: 60 VTKNS-SQSLVVVAFDRRFPADSHGAVVYRNASWKAEIGQWLSSCDAVAKEVDIIEPIGG 118
Query: 121 KSCKSDCSGQGVCNHELGQCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICPTH 180
+ C SDCSGQGVCNHE G CRCFHGF G+ CS+++ CN+ KTPE+PYG+WVVSIC H
Sbjct: 119 RKCMSDCSGQGVCNHEFGLCRCFHGFTGEDCSQKLRLDCNYEKTPEMPYGKWVVSICSRH 178
Query: 181 CDTTRAMCFCGEGTKYPNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPG 240
CDTTRAMCFCGEGTKYPNRPV E+CGFQ+N P+ P PK TDW+K DLD I TTN SK G
Sbjct: 179 CDTTRAMCFCGEGTKYPNRPVPESCGFQINSPTNPDEPKMTDWSKPDLD-ILTTNSSKQG 237
Query: 241 WCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPVSSTCVNQCSGHGHCRGGFCQCDSG 300
WCNVDPE+AYA+KV+ KEECDCKYD L G+FCE+PV TCVNQCSGHG CRGGFCQCD G
Sbjct: 238 WCNVDPEDAYAMKVKIKEECDCKYDCLWGRFCEIPVQCTCVNQCSGHGKCRGGFCQCDKG 297
Query: 301 WYGVDCSIPSVMSSMSEWPQWLRPAHIDIPINANITGNLVNLNAVVKKKRPLLYVYDLPP 360
W+G DCSIPS +S++ EWPQWLRPAH+++P N+ GNL+NL+AVVKKKRPL+Y+YDLPP
Sbjct: 298 WFGTDCSIPSTLSTVGEWPQWLRPAHLEVPSEKNVPGNLINLSAVVKKKRPLIYIYDLPP 357
Query: 361 EFNSLLLEGRHYKLECVNRIYNEKNETLWTDMLYGSQMAFYESILASPHRTLNGEEADFF 420
+FNSLL+EGRH+K ECVNRIY+E+N T+WTD LYGSQMAFYE+ILA+ HRT+NGEEADFF
Sbjct: 358 DFNSLLIEGRHFKFECVNRIYDERNATVWTDYLYGSQMAFYENILATAHRTMNGEEADFF 417
Query: 421 FVPVLDSCIITRADDAPHLSAQEHRGLRSSLTLEFYKKAYEHIIEHYPYWNRTSGRDHIW 480
FVPVLDSCII RADDAPH++ Q H GLRSSLTLEFYK+AYEHI+E YPYWNR++GRDHIW
Sbjct: 418 FVPVLDSCIINRADDAPHINMQNHTGLRSSLTLEFYKRAYEHIVEKYPYWNRSAGRDHIW 477
Query: 481 FFSWDEGACYAPKEIWNSMMLVHWGNTNSKHNHSTTAYWADNWDRISSSRRGNHSCFDPE 540
FFSWDEGACYAPKEIWNSMMLVHWGNTNSKHNHSTTAY+ DNWD IS RRG+H CFDP
Sbjct: 478 FFSWDEGACYAPKEIWNSMMLVHWGNTNSKHNHSTTAYFGDNWDDISDERRGDHPCFDPR 537
Query: 541 KDLVLPAWKAPDAFVLRSKLWASPREKRKTLFYFNGNLGSAYPNGRPESSYSMGVRQKLA 600
KDLV+PAWK PD + +R W PREKRKTLFYFNGNLG AY GRPE SYSMG+RQKLA
Sbjct: 538 KDLVIPAWKVPDPYSMRKNYWERPREKRKTLFYFNGNLGPAYEKGRPEDSYSMGIRQKLA 597
Query: 601 EEYGSSPNKEGKLGKQHAEDVIVTSLRSENYHEDLSSSVFCGVLPGDGWSGRMEDSILQG 660
EE+GSSPNKEGKLGKQHAEDVIVT LRS+NYH+D+++S+FCG PGDGWSGRMEDSILQG
Sbjct: 598 EEFGSSPNKEGKLGKQHAEDVIVTPLRSDNYHKDIANSIFCGAFPGDGWSGRMEDSILQG 657
Query: 661 CIPVVIQ 667
C+PV+IQ
Sbjct: 658 CVPVIIQ 664
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| TAIR|locus:2172676 F8H "AT5G22940" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2159198 GUT1 "AT5G61840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2016004 GUT2 "AT1G27440" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2046163 FRA8 "FRAGILE FIBER 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P24821 TNC "Tenascin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-030804-1 tnr "tenascin R (restrictin, janusin)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| MGI|MGI:101922 Tnc "tenascin C" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P10039 TNC "Tenascin" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-980526-104 tnc "tenascin C" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_LG_VI000457 | hypothetical protein (793 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 683 | |||
| pfam03016 | 292 | pfam03016, Exostosin, Exostosin family | 1e-47 | |
| pfam07974 | 31 | pfam07974, EGF_2, EGF-like domain | 1e-04 |
| >gnl|CDD|217320 pfam03016, Exostosin, Exostosin family | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 1e-47
Identities = 87/323 (26%), Positives = 115/323 (35%), Gaps = 70/323 (21%)
Query: 347 KKKRPLLYVYDLPPEFNSLLLEGRHYKLECVNRIYNEKNETLWTDMLYGSQMAFYESILA 406
K +YVYDLP FN L L + Y ++ ++SIL
Sbjct: 1 SCKGLKVYVYDLPRRFNLL-----EDVLPETSWYLTH---------QYAAESILHKSILN 46
Query: 407 SPHRTLNGEEADFFFVPVLDSCIITRADDAPHLSAQEHRGLRSSLTLEFYKKAYEHIIEH 466
S RTL+ +EAD FFVP S + + +E
Sbjct: 47 SRCRTLDPDEADLFFVPFYTSLSVGTNAVER----------------DLLPSELVEWLES 90
Query: 467 YPYWNRTSGRDHIWFFSWDEGACYAPKEIWNSMMLVHWGNTNSKHNHSTTAYWADNWDRI 526
PYWNR+ GRDHI S G +
Sbjct: 91 LPYWNRSGGRDHIIVNSHPFGGSAFDRLP-ALNNNTILAVLAGG---------------- 133
Query: 527 SSSRRGNHSCFDPEKDLVLPAWKAPDAFVLRSKLWASPREKRKTLFYFNGNLGSAYPNGR 586
+ F P D+ LPA+ P+ V + P KRKTL +F G A
Sbjct: 134 ----GFSEDQFRPGFDVPLPAYFHPN-SVDDLESDGMPPSKRKTLLFFAGGPRPAGKGAL 188
Query: 587 PESSYSMGVRQKLAEEYGSSPNK--EGKLGKQHAEDVIVTSLRSENYHEDLSSSVFCGVL 644
+ +R L EE +SP+ EG + ENY E L SS FC V
Sbjct: 189 -----ANAIRDLLIEECKNSPDFQCEGNQSCGNP----------ENYMELLRSSRFCLVP 233
Query: 645 PGDG-WSGRMEDSILQGCIPVVI 666
PGD S R+ D++ GCIPV+I
Sbjct: 234 PGDTPTSPRLFDALRAGCIPVII 256
|
The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. Length = 292 |
| >gnl|CDD|219677 pfam07974, EGF_2, EGF-like domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 683 | |||
| PF03016 | 302 | Exostosin: Exostosin family; InterPro: IPR004263 H | 100.0 | |
| KOG1021 | 464 | consensus Acetylglucosaminyltransferase EXT1/exost | 100.0 | |
| KOG2264 | 907 | consensus Exostosin EXT1L [Signal transduction mec | 99.64 | |
| KOG1225 | 525 | consensus Teneurin-1 and related extracellular mat | 99.63 | |
| KOG1225 | 525 | consensus Teneurin-1 and related extracellular mat | 99.54 | |
| KOG1226 | 783 | consensus Integrin beta subunit (N-terminal portio | 99.45 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 99.07 | |
| KOG1226 | 783 | consensus Integrin beta subunit (N-terminal portio | 99.05 | |
| KOG1219 | 4289 | consensus Uncharacterized conserved protein, conta | 98.96 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 98.9 | |
| KOG1022 | 691 | consensus Acetylglucosaminyltransferase EXT2/exost | 98.59 | |
| KOG1836 | 1705 | consensus Extracellular matrix glycoprotein Lamini | 98.53 | |
| KOG4289 | 2531 | consensus Cadherin EGF LAG seven-pass G-type recep | 98.33 | |
| KOG4289 | 2531 | consensus Cadherin EGF LAG seven-pass G-type recep | 98.27 | |
| KOG1219 | 4289 | consensus Uncharacterized conserved protein, conta | 98.0 | |
| PF07974 | 32 | EGF_2: EGF-like domain; InterPro: IPR013111 A sequ | 97.96 | |
| KOG1217 | 487 | consensus Fibrillins and related proteins containi | 97.84 | |
| KOG1836 | 1705 | consensus Extracellular matrix glycoprotein Lamini | 97.74 | |
| KOG4260 | 350 | consensus Uncharacterized conserved protein [Funct | 97.7 | |
| PF07974 | 32 | EGF_2: EGF-like domain; InterPro: IPR013111 A sequ | 97.61 | |
| KOG3512 | 592 | consensus Netrin, axonal chemotropic factor [Signa | 97.52 | |
| KOG1217 | 487 | consensus Fibrillins and related proteins containi | 97.29 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 97.16 | |
| smart00051 | 63 | DSL delta serrate ligand. | 97.1 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 97.06 | |
| PF00008 | 32 | EGF: EGF-like domain This is a sub-family of the P | 96.85 | |
| KOG1218 | 316 | consensus Proteins containing Ca2+-binding EGF-lik | 96.29 | |
| PF12661 | 13 | hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E | 96.2 | |
| KOG3512 | 592 | consensus Netrin, axonal chemotropic factor [Signa | 96.02 | |
| PF12661 | 13 | hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E | 95.97 | |
| smart00179 | 39 | EGF_CA Calcium-binding EGF-like domain. | 95.76 | |
| smart00051 | 63 | DSL delta serrate ligand. | 95.72 | |
| PF00053 | 49 | Laminin_EGF: Laminin EGF-like (Domains III and V); | 95.61 | |
| PF00008 | 32 | EGF: EGF-like domain This is a sub-family of the P | 95.2 | |
| cd00054 | 38 | EGF_CA Calcium-binding EGF-like domain, present in | 95.11 | |
| KOG4260 | 350 | consensus Uncharacterized conserved protein [Funct | 95.0 | |
| cd00055 | 50 | EGF_Lam Laminin-type epidermal growth factor-like | 94.94 | |
| PF00852 | 349 | Glyco_transf_10: Glycosyltransferase family 10 (fu | 94.71 | |
| PF01414 | 63 | DSL: Delta serrate ligand; InterPro: IPR001774 Lig | 94.58 | |
| KOG1218 | 316 | consensus Proteins containing Ca2+-binding EGF-lik | 94.55 | |
| smart00180 | 46 | EGF_Lam Laminin-type epidermal growth factor-like | 94.43 | |
| cd00053 | 36 | EGF Epidermal growth factor domain, found in epide | 93.92 | |
| smart00181 | 35 | EGF Epidermal growth factor-like domain. | 93.7 | |
| PHA02887 | 126 | EGF-like protein; Provisional | 92.99 | |
| smart00179 | 39 | EGF_CA Calcium-binding EGF-like domain. | 90.8 | |
| PF07645 | 42 | EGF_CA: Calcium-binding EGF domain; InterPro: IPR0 | 90.48 | |
| PF04863 | 56 | EGF_alliinase: Alliinase EGF-like domain; InterPro | 90.41 | |
| cd00054 | 38 | EGF_CA Calcium-binding EGF-like domain, present in | 90.03 | |
| cd00055 | 50 | EGF_Lam Laminin-type epidermal growth factor-like | 88.61 | |
| PF01414 | 63 | DSL: Delta serrate ligand; InterPro: IPR001774 Lig | 88.09 | |
| cd00053 | 36 | EGF Epidermal growth factor domain, found in epide | 88.09 | |
| KOG3607 | 716 | consensus Meltrins, fertilins and related Zn-depen | 86.64 | |
| KOG3607 | 716 | consensus Meltrins, fertilins and related Zn-depen | 86.56 | |
| KOG2619 | 372 | consensus Fucosyltransferase [Carbohydrate transpo | 86.56 | |
| PF00053 | 49 | Laminin_EGF: Laminin EGF-like (Domains III and V); | 86.35 | |
| PF12947 | 36 | EGF_3: EGF domain; InterPro: IPR024731 This entry | 85.19 | |
| PF12955 | 103 | DUF3844: Domain of unknown function (DUF3844); Int | 83.01 | |
| PF12955 | 103 | DUF3844: Domain of unknown function (DUF3844); Int | 82.61 | |
| PHA02887 | 126 | EGF-like protein; Provisional | 82.46 | |
| PF04863 | 56 | EGF_alliinase: Alliinase EGF-like domain; InterPro | 81.77 | |
| smart00181 | 35 | EGF Epidermal growth factor-like domain. | 81.67 |
| >PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=375.48 Aligned_cols=272 Identities=33% Similarity=0.604 Sum_probs=195.0
Q ss_pred cCCceEEEecCChhhhHHHhhccccccccccccccCcCccccccccchhHHHHHHHHhcCCCccCCcCCCceEEEeccce
Q 005688 348 KKRPLLYVYDLPPEFNSLLLEGRHYKLECVNRIYNEKNETLWTDMLYGSQMAFYESILASPHRTLNGEEADFFFVPVLDS 427 (683)
Q Consensus 348 ~~~p~IYvYdLP~~fn~~ll~~~~~~~~c~~~~~~~~~~~~w~~~~y~~E~~~~e~L~~s~~rT~dP~eAdlFyVP~~~~ 427 (683)
.++++|||||||++||.+++... .........+.+|++|.+||++|++|++||.||+|||+||||++.+
T Consensus 2 ~~~lkVYVY~lp~~~~~~~~~~~-----------~~~~~~~~~~~~~~~e~~l~~~l~~s~~~T~dp~eAdlF~vP~~~~ 70 (302)
T PF03016_consen 2 HRGLKVYVYPLPPKFNKDLLDPR-----------EDEQCSWYETSQYALEVILHEALLNSPFRTDDPEEADLFFVPFYSS 70 (302)
T ss_pred CCCCEEEEEeCCccccccceecc-----------ccccCCCcccccchHHHHHHHHHHhCCcEeCCHHHCeEEEEEcccc
Confidence 45789999999999999888321 1122333456799999999999999999999999999999999998
Q ss_pred eeeeecCCCCcccccccccccchhHHHHHHHHHHHHHHcCcccccCCCccEEEEeccCCCCccCCcc--cccceEEeecc
Q 005688 428 CIITRADDAPHLSAQEHRGLRSSLTLEFYKKAYEHIIEHYPYWNRTSGRDHIWFFSWDEGACYAPKE--IWNSMMLVHWG 505 (683)
Q Consensus 428 ~~~~~~~~~p~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~PyWnR~~GrDH~~v~~~d~g~~~~~~~--~~~~~~l~~~g 505 (683)
+...... .........+.+..++.++++++|||||++|+||||++++|+|.+..... +.+...++...
T Consensus 71 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~w~r~~G~dH~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 140 (302)
T PF03016_consen 71 CYFHHWW----------GSPNSGADRDSLSDALRHLLASYPYWNRSGGRDHFFVNSHDRGGCSFDRNPRLMNNSIRAVVA 140 (302)
T ss_pred ccccccc----------CCccchhhHHHHHHHHHHHHhcCchhhccCCCCeEEEeccccccccccccHhhhccchhheec
Confidence 8741110 01111123445567778888899999999999999999999888864321 11111111100
Q ss_pred CCccCCCcccceeccCCccccCcCCCCCCCccCCCCceeecCccCCChhhhhccccCCCCCCCceeEEeccCCCCCCCCC
Q 005688 506 NTNSKHNHSTTAYWADNWDRISSSRRGNHSCFDPEKDLVLPAWKAPDAFVLRSKLWASPREKRKTLFYFNGNLGSAYPNG 585 (683)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~kDvviP~~~~~~~~~~~~~~~~~~~~~R~~L~~F~G~~~~~~~~~ 585 (683)
... ....+|+|++||++|++............+..+..+|++|++|+|++...
T Consensus 141 --------------~~~---------~~~~~~~~~~Di~~P~~~~~~~~~~~~~~~~~~~~~R~~l~~f~g~~~~~---- 193 (302)
T PF03016_consen 141 --------------FSS---------FSSSCFRPGFDIVIPPFVPPSSLPDWRPWPQRPPARRPYLLFFAGTIRPS---- 193 (302)
T ss_pred --------------cCC---------CCcCcccCCCCeeccccccccccCCccccccCCccCCceEEEEeeecccc----
Confidence 000 12358999999999998766543322222345678999999999998641
Q ss_pred CCCCCccHHHHHHHHHHhcCCCCCccccCcccCcceEEecCCchhHHHHhhcCceecccCCCC-CchhHHHHHhcCceeE
Q 005688 586 RPESSYSMGVRQKLAEEYGSSPNKEGKLGKQHAEDVIVTSLRSENYHEDLSSSVFCGVLPGDG-WSGRMEDSILQGCIPV 664 (683)
Q Consensus 586 ~~~~~ys~~iR~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~m~~S~FCL~p~Gd~-~s~Rl~dAi~~GCIPV 664 (683)
...|+.++|+.|++.|++.++.....+ ........+|.+.|++|||||+|+|++ +++||+|||++|||||
T Consensus 194 --~~~~~~~~r~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPV 264 (302)
T PF03016_consen 194 --SNDYSGGVRQRLLDECKSDPDFRCSDG-------SETCPSPSEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPV 264 (302)
T ss_pred --ccccchhhhhHHHHhcccCCcceeeec-------ccccccchHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeE
Confidence 111678999999999987654321100 011245577999999999999999997 6899999999999999
Q ss_pred EeeCCeee--cccc
Q 005688 665 VIQCKFIF--STTL 676 (683)
Q Consensus 665 iisD~~~l--~~~~ 676 (683)
||+|++.| +++|
T Consensus 265 ii~d~~~lPf~~~l 278 (302)
T PF03016_consen 265 IISDDYVLPFEDVL 278 (302)
T ss_pred EecCcccCCccccc
Confidence 99999986 5544
|
Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane |
| >KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
| >KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
| >KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
| >KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
| >KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
| >KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures] | Back alignment and domain information |
|---|
| >KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins | Back alignment and domain information |
|---|
| >KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures] | Back alignment and domain information |
|---|
| >KOG4260 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins | Back alignment and domain information |
|---|
| >KOG3512 consensus Netrin, axonal chemotropic factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
| >smart00051 DSL delta serrate ligand | Back alignment and domain information |
|---|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
| >PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins | Back alignment and domain information |
|---|
| >KOG1218 consensus Proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A | Back alignment and domain information |
|---|
| >KOG3512 consensus Netrin, axonal chemotropic factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A | Back alignment and domain information |
|---|
| >smart00179 EGF_CA Calcium-binding EGF-like domain | Back alignment and domain information |
|---|
| >smart00051 DSL delta serrate ligand | Back alignment and domain information |
|---|
| >PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation | Back alignment and domain information |
|---|
| >PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins | Back alignment and domain information |
|---|
| >cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins | Back alignment and domain information |
|---|
| >KOG4260 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies | Back alignment and domain information |
|---|
| >PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
| >PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates | Back alignment and domain information |
|---|
| >KOG1218 consensus Proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai | Back alignment and domain information |
|---|
| >cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium | Back alignment and domain information |
|---|
| >smart00181 EGF Epidermal growth factor-like domain | Back alignment and domain information |
|---|
| >PHA02887 EGF-like protein; Provisional | Back alignment and domain information |
|---|
| >smart00179 EGF_CA Calcium-binding EGF-like domain | Back alignment and domain information |
|---|
| >PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins | Back alignment and domain information |
|---|
| >PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
| >cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins | Back alignment and domain information |
|---|
| >cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies | Back alignment and domain information |
|---|
| >PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates | Back alignment and domain information |
|---|
| >cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium | Back alignment and domain information |
|---|
| >KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation | Back alignment and domain information |
|---|
| >PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins | Back alignment and domain information |
|---|
| >PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species | Back alignment and domain information |
|---|
| >PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species | Back alignment and domain information |
|---|
| >PHA02887 EGF-like protein; Provisional | Back alignment and domain information |
|---|
| >PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
| >smart00181 EGF Epidermal growth factor-like domain | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687 | Back alignment and structure |
|---|
Score = 71.3 bits (174), Expect = 5e-13
Identities = 40/191 (20%), Positives = 58/191 (30%), Gaps = 36/191 (18%)
Query: 123 CKSDCSGQGVCNHELGQCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICPTHCD 182
+S C G+G G CRC G+ GK C + + + IC D
Sbjct: 433 DRSLCHGKGFLEC--GICRCDTGYIGKNCECQTQGRSSQELEGSCRKD-NNSIICSGLGD 489
Query: 183 TTRAMCFCGEGTKYPNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWC 242
C CG+ + + + G D + N G G C
Sbjct: 490 -----CVCGQCLCHTSDVPGKLIY---------GQYCECDTINCERYNGQVCGGPGRGLC 535
Query: 243 NVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPVS-----STCVNQCSGHGHCRGGFCQC 297
+C C G G C+ + + +CSG G CR C+C
Sbjct: 536 FCG-------------KCRCH-PGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCEC 581
Query: 298 DSGWYGVDCSI 308
SG+ C
Sbjct: 582 HSGYQLPLCQE 592
|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687 | Back alignment and structure |
|---|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687 | Back alignment and structure |
|---|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687 | Back alignment and structure |
|---|
| >2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A* Length = 725 | Back alignment and structure |
|---|
| >2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus} Length = 387 | Back alignment and structure |
|---|
| >2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A Length = 217 | Back alignment and structure |
|---|
| >2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A Length = 217 | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690 | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690 | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690 | Back alignment and structure |
|---|
| >2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324 | Back alignment and structure |
|---|
| >2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324 | Back alignment and structure |
|---|
| >2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324 | Back alignment and structure |
|---|
| >2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324 | Back alignment and structure |
|---|
| >2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* Length = 472 | Back alignment and structure |
|---|
| >2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A* Length = 280 | Back alignment and structure |
|---|
| >3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* Length = 503 | Back alignment and structure |
|---|
| >2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein domain, chitin-binding, GERM agglutinin, chitin-binding protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum} PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A 9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A* 2x52_A* 1t0w_A* Length = 171 | Back alignment and structure |
|---|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169 | Back alignment and structure |
|---|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169 | Back alignment and structure |
|---|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169 | Back alignment and structure |
|---|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169 | Back alignment and structure |
|---|
| >2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423 | Back alignment and structure |
|---|
| >2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 683 | |||
| 2ygq_A | 324 | WIF-1, WNT inhibitory factor 1; signaling protein, | 99.75 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 99.61 | |
| 3k6s_B | 687 | Integrin beta-2; cell receptor, adhesion molecule, | 99.6 | |
| 2vj2_A | 169 | Jagged-1; signalling, polymorphism, glycoprotein, | 99.5 | |
| 2gy5_A | 423 | Angiopoietin-1 receptor; ligand-binding domain, tr | 99.43 | |
| 3k6s_B | 687 | Integrin beta-2; cell receptor, adhesion molecule, | 99.41 | |
| 2gy5_A | 423 | Angiopoietin-1 receptor; ligand-binding domain, tr | 99.36 | |
| 2p28_B | 217 | Integrin beta-2; hybrid domain, PSI domain, I-EGF | 99.31 | |
| 2vj3_A | 135 | Neurogenic locus notch homolog protein 1; transcri | 99.27 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 99.24 | |
| 2ygq_A | 324 | WIF-1, WNT inhibitory factor 1; signaling protein, | 99.23 | |
| 1z1y_A | 186 | Ookinete surface protein PVS25; four EGF-like doma | 99.21 | |
| 4d90_A | 143 | EGF-like repeat and discoidin I-like domain-conta | 99.19 | |
| 2vj2_A | 169 | Jagged-1; signalling, polymorphism, glycoprotein, | 99.06 | |
| 1klo_A | 162 | Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: | 99.05 | |
| 4fbr_A | 267 | Lectin, myxobacterial hemagglutinin; beta-barrel, | 99.02 | |
| 4aqs_A | 525 | Laminin subunit beta-1; cell adhesion; HET: NAG BM | 98.9 | |
| 2bou_A | 143 | EGF-like module containing mucin-like hormone rece | 98.66 | |
| 1yo8_A | 634 | Thrombospondin-2; EGF, Ca(2+)-binding domains, lec | 98.51 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.47 | |
| 1z1y_A | 186 | Ookinete surface protein PVS25; four EGF-like doma | 98.45 | |
| 4fbr_A | 267 | Lectin, myxobacterial hemagglutinin; beta-barrel, | 98.44 | |
| 2vj3_A | 135 | Neurogenic locus notch homolog protein 1; transcri | 98.41 | |
| 1klo_A | 162 | Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: | 98.39 | |
| 4aqs_A | 525 | Laminin subunit beta-1; cell adhesion; HET: NAG BM | 98.33 | |
| 4d90_A | 143 | EGF-like repeat and discoidin I-like domain-conta | 98.29 | |
| 3zyj_B | 426 | Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA | 98.26 | |
| 1tpg_A | 91 | T-plasminogen activator F1-G; plasminogen activati | 98.25 | |
| 1tpg_A | 91 | T-plasminogen activator F1-G; plasminogen activati | 98.24 | |
| 1aut_L | 114 | Activated protein C; serine proteinase, plasma cal | 98.13 | |
| 2p28_B | 217 | Integrin beta-2; hybrid domain, PSI domain, I-EGF | 98.09 | |
| 1uzk_A | 162 | Fibrillin-1; glycoprotein, extra-cellular matrix, | 98.05 | |
| 2w86_A | 147 | Fibrillin-1, fibrillin1; phosphoprotein, EGF-like | 98.0 | |
| 1x7a_L | 146 | Coagulation factor IX, light chain; inhibition, bl | 97.94 | |
| 1dx5_I | 118 | Thrombomodulin; serine proteinase, EGF-like domain | 97.88 | |
| 1nfu_B | 195 | Coagulation factor XA, light chain; hydrolase; HET | 97.85 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 97.79 | |
| 1yo8_A | 634 | Thrombospondin-2; EGF, Ca(2+)-binding domains, lec | 97.79 | |
| 2vh0_B | 134 | Activated factor XA light chain; serine protease, | 97.74 | |
| 2c4f_L | 142 | Coagulation factor VII precursor; blood coagulatio | 97.63 | |
| 3h5c_B | 317 | Vitamin K-dependent protein Z; protein Z-protein Z | 97.62 | |
| 3u7u_G | 55 | Neuregulin 1; signaling protein, transferase-trans | 97.55 | |
| 3u7u_G | 55 | Neuregulin 1; signaling protein, transferase-trans | 97.55 | |
| 2e26_A | 725 | Reelin, reeler protein; signaling protein; HET: NA | 97.54 | |
| 1edm_B | 39 | Factor IX; epidermal growth factor, EGF, calcium- | 97.5 | |
| 3zyj_B | 426 | Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA | 97.36 | |
| 2p26_A | 280 | Integrin beta-2; hybrid domain, PSI domain, I-EGF | 97.35 | |
| 4aqt_A | 375 | Laminin subunit gamma-1; cell adhesion; HET: NAG B | 97.34 | |
| 2ygo_A | 188 | WIF-1, WNT inhibitory factor 1; signaling protein, | 97.3 | |
| 1nfu_B | 195 | Coagulation factor XA, light chain; hydrolase; HET | 97.27 | |
| 1emn_A | 82 | Fibrillin; extracellular matrix, calcium-binding, | 97.25 | |
| 2c4f_L | 142 | Coagulation factor VII precursor; blood coagulatio | 97.24 | |
| 2ygo_A | 188 | WIF-1, WNT inhibitory factor 1; signaling protein, | 97.23 | |
| 1egf_A | 53 | Epidermal growth factor; NMR {Mus musculus} SCOP: | 97.21 | |
| 1x7a_L | 146 | Coagulation factor IX, light chain; inhibition, bl | 97.2 | |
| 1a3p_A | 45 | Epidermal growth factor; disulfide connectivities, | 97.18 | |
| 1aut_L | 114 | Activated protein C; serine proteinase, plasma cal | 97.06 | |
| 1dx5_I | 118 | Thrombomodulin; serine proteinase, EGF-like domain | 97.06 | |
| 2vh0_B | 134 | Activated factor XA light chain; serine protease, | 97.06 | |
| 2p26_A | 280 | Integrin beta-2; hybrid domain, PSI domain, I-EGF | 97.05 | |
| 3h5c_B | 317 | Vitamin K-dependent protein Z; protein Z-protein Z | 97.0 | |
| 1hae_A | 63 | Heregulin-alpha; growth factor; NMR {Homo sapiens} | 96.99 | |
| 2bou_A | 143 | EGF-like module containing mucin-like hormone rece | 96.99 | |
| 1z6c_A | 87 | Vitamin K-dependent protein S; EGF module, blood c | 96.95 | |
| 1emn_A | 82 | Fibrillin; extracellular matrix, calcium-binding, | 96.9 | |
| 1k36_A | 46 | Epiregulin; EGF-like fold, hormone/growth factor c | 96.88 | |
| 1lmj_A | 86 | Fibrillin 1; EGF, calcium, microfibril, neonatal, | 96.87 | |
| 3ca7_A | 52 | Protein spitz; argos, EGF, developmental protein, | 96.83 | |
| 2e26_A | 725 | Reelin, reeler protein; signaling protein; HET: NA | 96.78 | |
| 1nql_B | 53 | Epidermal growth factor; cell surface receptor, ty | 96.68 | |
| 2y38_A | 403 | Laminin subunit alpha-5; structural protein, cell | 96.59 | |
| 2k2s_B | 61 | Micronemal protein 6; microneme protein complex, c | 96.53 | |
| 2w2n_E | 107 | LDL receptor, low-density lipoprotein receptor; hy | 96.44 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.42 | |
| 1edm_B | 39 | Factor IX; epidermal growth factor, EGF, calcium- | 96.35 | |
| 2w2n_E | 107 | LDL receptor, low-density lipoprotein receptor; hy | 96.31 | |
| 1z6c_A | 87 | Vitamin K-dependent protein S; EGF module, blood c | 96.2 | |
| 3ca7_A | 52 | Protein spitz; argos, EGF, developmental protein, | 96.06 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.06 | |
| 1a3p_A | 45 | Epidermal growth factor; disulfide connectivities, | 96.04 | |
| 1egf_A | 53 | Epidermal growth factor; NMR {Mus musculus} SCOP: | 95.82 | |
| 1lmj_A | 86 | Fibrillin 1; EGF, calcium, microfibril, neonatal, | 95.73 | |
| 2fd6_A | 122 | Urokinase-type plasminogen activator; UPAR, ATF, A | 95.69 | |
| 1nql_B | 53 | Epidermal growth factor; cell surface receptor, ty | 95.69 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 95.62 | |
| 3ltf_D | 58 | Protein spitz; receptor-ligand complex ectodomain | 95.61 | |
| 2y38_A | 403 | Laminin subunit alpha-5; structural protein, cell | 95.58 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 95.55 | |
| 4aqt_A | 375 | Laminin subunit gamma-1; cell adhesion; HET: NAG B | 95.51 | |
| 1k36_A | 46 | Epiregulin; EGF-like fold, hormone/growth factor c | 95.44 | |
| 1hae_A | 63 | Heregulin-alpha; growth factor; NMR {Homo sapiens} | 95.35 | |
| 1uzk_A | 162 | Fibrillin-1; glycoprotein, extra-cellular matrix, | 95.28 | |
| 1g1s_A | 162 | P-selectin; selectin, lectin, EGF, sulphated, SLEX | 95.05 | |
| 2fd6_A | 122 | Urokinase-type plasminogen activator; UPAR, ATF, A | 94.83 | |
| 2ddu_A | 387 | Reelin; beta-jelly-roll, signaling protein; 2.05A | 94.67 | |
| 2ddu_A | 387 | Reelin; beta-jelly-roll, signaling protein; 2.05A | 94.39 | |
| 3ltf_D | 58 | Protein spitz; receptor-ligand complex ectodomain | 94.34 | |
| 1q4g_A | 553 | Prostaglandin G/H synthase 1; cyclooxygenase, non- | 93.92 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 93.79 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 93.76 | |
| 2k2s_B | 61 | Micronemal protein 6; microneme protein complex, c | 93.4 | |
| 2rnl_A | 50 | Amphiregulin; AR, colorectum cell-derived growth f | 93.1 | |
| 3nt1_A | 587 | Prostaglandin-endoperoxide synthase 2; prostagland | 92.92 | |
| 1iox_A | 50 | Betacellulin; EGF-like fold, hormone/growth factor | 92.83 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 92.56 | |
| 3cfw_A | 164 | L-selectin; EGF, cell adhesion, EGF-like domain, g | 92.17 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 91.04 | |
| 3e50_C | 50 | Protransforming growth factor alpha; IDE, TGF-alph | 91.0 | |
| 1g1s_A | 162 | P-selectin; selectin, lectin, EGF, sulphated, SLEX | 90.62 | |
| 1q4g_A | 553 | Prostaglandin G/H synthase 1; cyclooxygenase, non- | 90.49 | |
| 2i9a_A | 145 | Urokinase-type plasminogen activator; growth facto | 90.36 | |
| 1xdt_R | 79 | Hbegf, heparin-binding epidermal growth factor; co | 89.43 | |
| 1g1t_A | 157 | E-selectin; EGF, adhesion molecule, SLEX, immune s | 89.28 | |
| 1iox_A | 50 | Betacellulin; EGF-like fold, hormone/growth factor | 88.98 | |
| 3cfw_A | 164 | L-selectin; EGF, cell adhesion, EGF-like domain, g | 88.9 | |
| 3nt1_A | 587 | Prostaglandin-endoperoxide synthase 2; prostagland | 88.59 | |
| 2i9a_A | 145 | Urokinase-type plasminogen activator; growth facto | 88.58 | |
| 2w86_A | 147 | Fibrillin-1, fibrillin1; phosphoprotein, EGF-like | 88.3 | |
| 3e50_C | 50 | Protransforming growth factor alpha; IDE, TGF-alph | 87.29 | |
| 1g1t_A | 157 | E-selectin; EGF, adhesion molecule, SLEX, immune s | 87.01 | |
| 3qhp_A | 166 | Type 1 capsular polysaccharide biosynthesis prote | 86.86 | |
| 2rnl_A | 50 | Amphiregulin; AR, colorectum cell-derived growth f | 86.22 | |
| 1xdt_R | 79 | Hbegf, heparin-binding epidermal growth factor; co | 85.39 | |
| 3t3p_B | 472 | Integrin beta-3; integrin, cell adhesion, blood cl | 84.26 | |
| 3t3p_B | 472 | Integrin beta-3; integrin, cell adhesion, blood cl | 83.84 | |
| 2nzw_A | 371 | Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {H | 83.31 | |
| 3asi_A | 410 | Neurexin-1-alpha; beta-sandwich, cell adhesion, sy | 83.14 | |
| 3g5c_A | 510 | ADAM 22; alpha/beta fold, cross-linked domain, cel | 82.81 | |
| 3g5c_A | 510 | ADAM 22; alpha/beta fold, cross-linked domain, cel | 80.93 |
| >2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-18 Score=184.84 Aligned_cols=159 Identities=27% Similarity=0.598 Sum_probs=67.0
Q ss_pred cccCCCCCCCCCCCCEEeCCCCceeeCCCCcCCCCCccccCCCCCCCCCCCCCCCcccccCC--CcccCCCceEeeCCCc
Q 005688 117 MIGGKSCKSDCSGQGVCNHELGQCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICP--THCDTTRAMCFCGEGT 194 (683)
Q Consensus 117 ~~~~~~C~~~C~~~G~C~~~~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~--~~C~~~~g~C~C~~G~ 194 (683)
.+....|+++|+++|+|+. .++|.|++||+|++|+.. .|.. .|. +.|.. .+.|.|.+||
T Consensus 145 ~C~~~~C~~~C~~~G~C~~-~~~C~C~~G~~G~~C~~~---~C~~--------------~C~~~G~C~~-~~~C~C~~G~ 205 (324)
T 2ygq_A 145 TCQQAECPGGCRNGGFCNE-RRICECPDGFHGPHCEKA---LCTP--------------RCMNGGLCVT-PGFCICPPGF 205 (324)
T ss_dssp EECCCCCSSCCCSSCEECT-TSCEECCTTEESSSSCEE---SSSS--------------CCCTTCEECS-SCCEECCTTC
T ss_pred cccCCCCCCCCCCCCEECC-CCeEECCCCCcCCCCCCC---CCCC--------------CCCCCCEEcC-CCEEeCCCCc
Confidence 4544688899999999985 689999999999999974 3542 343 34443 5899999999
Q ss_pred ccCCCCCCCCCCCcc-cCCCC---CCCCCCCCCccCCCCCc-cCCCCCCCccccCCcccccccccccccccccCCCCCCC
Q 005688 195 KYPNRPVAEACGFQV-NLPSQ---PGAPKSTDWAKADLDNI-FTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLG 269 (683)
Q Consensus 195 ~G~~C~~~~~C~~~~-~~~~~---~~~~C~~gw~g~~c~~~-~~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G 269 (683)
+|..|+.. .|...+ +...| ..|.|.+||.|..|+.. ...+|.++|.|.. .++|.|+ +||+|
T Consensus 206 ~G~~C~~~-~C~~~C~~~G~C~~~~~C~C~~G~~G~~C~~~~C~~~C~~~g~C~~------------~~~C~C~-~G~~G 271 (324)
T 2ygq_A 206 YGVNCDKA-NCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIG------------KSKCKCS-KGYQG 271 (324)
T ss_dssp BTTTTCBC-CCSSCCCSSCCBSCSSCBCCCTTCCTTTTC-----------------------------------------
T ss_pred cCCCcccC-cCCCCCCCCCeeCCCCeeeCCCCccCCCCCcCcCCCcCCCCCEECC------------CCEEECC-CCCcC
Confidence 99999653 232111 11122 34679999999999732 2356777777742 4789999 99999
Q ss_pred CCccccCCCCcCCCCCCCceec-CCeeecCCCcccCCCCCCcc
Q 005688 270 QFCEVPVSSTCVNQCSGHGHCR-GGFCQCDSGWYGVDCSIPSV 311 (683)
Q Consensus 270 ~~C~~~~~~~C~~~C~~~G~C~-~g~C~C~~G~~G~~C~~~~~ 311 (683)
..|+.+ .|.+.|+++|+|+ .++|.|.+||+|.+|+....
T Consensus 272 ~~C~~~---~C~~~C~~~g~C~~~~~C~C~~G~~G~~C~~~~~ 311 (324)
T 2ygq_A 272 DLCSKP---VCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYE 311 (324)
T ss_dssp -------------------------------------------
T ss_pred CCCcCC---CCCCCCCCCCEECCCCEeECCCCCcCCCCCCCCc
Confidence 999965 7888999999998 78999999999999988653
|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* | Back alignment and structure |
|---|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A | Back alignment and structure |
|---|
| >2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* | Back alignment and structure |
|---|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* | Back alignment and structure |
|---|
| >2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* | Back alignment and structure |
|---|
| >2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A | Back alignment and structure |
|---|
| >2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
| >2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} | Back alignment and structure |
|---|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A | Back alignment and structure |
|---|
| >4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A | Back alignment and structure |
|---|
| >1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A | Back alignment and structure |
|---|
| >4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A* | Back alignment and structure |
|---|
| >4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} | Back alignment and structure |
|---|
| >2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A | Back alignment and structure |
|---|
| >1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* | Back alignment and structure |
|---|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A | Back alignment and structure |
|---|
| >4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A* | Back alignment and structure |
|---|
| >2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* | Back alignment and structure |
|---|
| >1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A | Back alignment and structure |
|---|
| >4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} | Back alignment and structure |
|---|
| >4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
| >1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A | Back alignment and structure |
|---|
| >1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A | Back alignment and structure |
|---|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* | Back alignment and structure |
|---|
| >2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A | Back alignment and structure |
|---|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A | Back alignment and structure |
|---|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* | Back alignment and structure |
|---|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A | Back alignment and structure |
|---|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* | Back alignment and structure |
|---|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
| >1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* | Back alignment and structure |
|---|
| >2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... | Back alignment and structure |
|---|
| >2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... | Back alignment and structure |
|---|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} | Back alignment and structure |
|---|
| >3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens} | Back alignment and structure |
|---|
| >3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens} | Back alignment and structure |
|---|
| >2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A* | Back alignment and structure |
|---|
| >1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A | Back alignment and structure |
|---|
| >3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
| >2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A* | Back alignment and structure |
|---|
| >4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} | Back alignment and structure |
|---|
| >2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A* | Back alignment and structure |
|---|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* | Back alignment and structure |
|---|
| >1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A | Back alignment and structure |
|---|
| >2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... | Back alignment and structure |
|---|
| >2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A* | Back alignment and structure |
|---|
| >1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A | Back alignment and structure |
|---|
| >1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* | Back alignment and structure |
|---|
| >1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1 | Back alignment and structure |
|---|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* | Back alignment and structure |
|---|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A | Back alignment and structure |
|---|
| >2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... | Back alignment and structure |
|---|
| >2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A* | Back alignment and structure |
|---|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} | Back alignment and structure |
|---|
| >1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A | Back alignment and structure |
|---|
| >2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A | Back alignment and structure |
|---|
| >1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A | Back alignment and structure |
|---|
| >1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A | Back alignment and structure |
|---|
| >1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 | Back alignment and structure |
|---|
| >3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D | Back alignment and structure |
|---|
| >2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A* | Back alignment and structure |
|---|
| >1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C* | Back alignment and structure |
|---|
| >2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
| >2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A | Back alignment and structure |
|---|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A | Back alignment and structure |
|---|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
| >1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A | Back alignment and structure |
|---|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A | Back alignment and structure |
|---|
| >1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
| >1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1 | Back alignment and structure |
|---|
| >1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A | Back alignment and structure |
|---|
| >1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 | Back alignment and structure |
|---|
| >2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A | Back alignment and structure |
|---|
| >1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C* | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
| >3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
| >4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} | Back alignment and structure |
|---|
| >1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A | Back alignment and structure |
|---|
| >1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A | Back alignment and structure |
|---|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A | Back alignment and structure |
|---|
| >1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A | Back alignment and structure |
|---|
| >2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A | Back alignment and structure |
|---|
| >2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus} | Back alignment and structure |
|---|
| >2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus} | Back alignment and structure |
|---|
| >3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
| >2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A | Back alignment and structure |
|---|
| >2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ... | Back alignment and structure |
|---|
| >1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
| >3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A | Back alignment and structure |
|---|
| >1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A | Back alignment and structure |
|---|
| >1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... | Back alignment and structure |
|---|
| >2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A* | Back alignment and structure |
|---|
| >1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1 | Back alignment and structure |
|---|
| >1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A | Back alignment and structure |
|---|
| >1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A | Back alignment and structure |
|---|
| >3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ... | Back alignment and structure |
|---|
| >2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A* | Back alignment and structure |
|---|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A | Back alignment and structure |
|---|
| >1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A | Back alignment and structure |
|---|
| >3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1 | Back alignment and structure |
|---|
| >3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* | Back alignment and structure |
|---|
| >3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* | Back alignment and structure |
|---|
| >2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A* | Back alignment and structure |
|---|
| >3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} | Back alignment and structure |
|---|
| >3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens} | Back alignment and structure |
|---|
| >3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 683 | ||||
| d1l3ya_ | 41 | g.3.11.6 (A:) Integrin beta EGF-like domains {Huma | 1e-05 | |
| d1jv2b4 | 31 | g.3.11.6 (B:532-562) Integrin beta EGF-like domain | 8e-05 | |
| d1jv2b5 | 43 | g.3.11.6 (B:563-605) Integrin beta EGF-like domain | 0.001 |
| >d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: Integrin beta EGF-like domains domain: Integrin beta EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (94), Expect = 1e-05
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 284 CSGHGHCRGGFCQCDSGWYGVDCS 307
G G C G C+C G+ G C
Sbjct: 17 GPGRGLCFCGKCRCHPGFEGSACQ 40
|
| >d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 31 | Back information, alignment and structure |
|---|
| >d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 43 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 683 | |||
| d1xkba1 | 39 | Factor X, N-terminal module {Human (Homo sapiens) | 98.0 | |
| d1edmb_ | 39 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 97.98 | |
| d2vj3a2 | 39 | Neurogenic locus notch homolog protein 1, Notch1 { | 97.98 | |
| d2c4fl1 | 37 | Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | 97.91 | |
| d2vj3a3 | 35 | Neurogenic locus notch homolog protein 1, Notch1 { | 97.89 | |
| d1g1ta2 | 39 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 97.76 | |
| d1g1sa2 | 40 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 97.75 | |
| d2vj3a1 | 42 | Neurogenic locus notch homolog protein 1, Notch1 { | 97.69 | |
| d1tpga1 | 41 | Plasminogen activator (tissue-type), t-PA {Human ( | 97.62 | |
| d1jv2b4 | 31 | Integrin beta EGF-like domains {Human (Homo sapien | 97.56 | |
| d1jv2b4 | 31 | Integrin beta EGF-like domains {Human (Homo sapien | 97.54 | |
| d1xkba1 | 39 | Factor X, N-terminal module {Human (Homo sapiens) | 97.49 | |
| d1cvua2 | 41 | Prostaglandin H2 synthase-1, EGF-like module {Mous | 97.46 | |
| d1q4ga2 | 42 | Prostaglandin H2 synthase-1, EGF-like module {Shee | 97.38 | |
| d1l3ya_ | 41 | Integrin beta EGF-like domains {Human (Homo sapien | 97.37 | |
| d1autl1 | 48 | Activated protein c (autoprothrombin IIa) {Human ( | 97.35 | |
| d2vj3a2 | 39 | Neurogenic locus notch homolog protein 1, Notch1 { | 97.23 | |
| d2c4fl1 | 37 | Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | 97.2 | |
| d1tpga1 | 41 | Plasminogen activator (tissue-type), t-PA {Human ( | 97.19 | |
| d1edmb_ | 39 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 97.18 | |
| d2vj3a3 | 35 | Neurogenic locus notch homolog protein 1, Notch1 { | 97.15 | |
| d1jv2b5 | 43 | Integrin beta EGF-like domains {Human (Homo sapien | 97.11 | |
| d1g1ta2 | 39 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 97.1 | |
| d1l3ya_ | 41 | Integrin beta EGF-like domains {Human (Homo sapien | 97.03 | |
| d1g1sa2 | 40 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 97.02 | |
| d3egfa_ | 53 | Epidermal growth factor, EGF {Mouse (Mus musculus) | 96.98 | |
| d2vj3a1 | 42 | Neurogenic locus notch homolog protein 1, Notch1 { | 96.93 | |
| d1jv2b5 | 43 | Integrin beta EGF-like domains {Human (Homo sapien | 96.88 | |
| d1autl1 | 48 | Activated protein c (autoprothrombin IIa) {Human ( | 96.85 | |
| d1nqlb_ | 48 | Epidermal growth factor, EGF {Human (Homo sapiens) | 96.8 | |
| d1haea_ | 63 | Heregulin-alpha, EGF-like domain {Human (Homo sapi | 96.74 | |
| d1cvua2 | 41 | Prostaglandin H2 synthase-1, EGF-like module {Mous | 96.69 | |
| d1q4ga2 | 42 | Prostaglandin H2 synthase-1, EGF-like module {Shee | 96.63 | |
| d2i9aa1 | 40 | Plasminogen activator (urokinase-type) {Human (Hom | 96.13 | |
| d1haea_ | 63 | Heregulin-alpha, EGF-like domain {Human (Homo sapi | 96.11 | |
| d2i9aa1 | 40 | Plasminogen activator (urokinase-type) {Human (Hom | 96.08 | |
| d3egfa_ | 53 | Epidermal growth factor, EGF {Mouse (Mus musculus) | 95.6 | |
| d1nqlb_ | 48 | Epidermal growth factor, EGF {Human (Homo sapiens) | 94.96 | |
| d1k36a_ | 46 | Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI | 94.82 | |
| d1kloa3 | 51 | Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: | 94.17 | |
| d1kloa2 | 56 | Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: | 94.04 | |
| d1ioxa_ | 50 | Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606] | 93.92 | |
| d1moxc_ | 49 | Transforming growth factor alpha {Human (Homo sapi | 93.91 | |
| d1xdtr_ | 41 | Heparin-binding epidermal growth factor, HBEGF {Hu | 91.98 | |
| d1ioxa_ | 50 | Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606] | 91.79 | |
| d1kloa1 | 55 | Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: | 91.74 | |
| d1emoa1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 91.13 | |
| d1moxc_ | 49 | Transforming growth factor alpha {Human (Homo sapi | 90.89 | |
| d1xdtr_ | 41 | Heparin-binding epidermal growth factor, HBEGF {Hu | 90.69 | |
| d1lmja2 | 42 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 90.6 | |
| d1k36a_ | 46 | Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI | 90.59 | |
| d1gl4a2 | 40 | EGF-like domain of nidogen-1 {Mouse (Mus musculus) | 90.2 | |
| d1lmja1 | 44 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 89.76 | |
| d2nzwa1 | 349 | Alpha1,3-fucosyltransferase FucT {Helicobacter pyl | 88.75 | |
| d1uzka2 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 87.98 | |
| d1emoa2 | 39 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 83.85 | |
| d1uzka1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 83.76 | |
| d1kloa3 | 51 | Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: | 83.33 | |
| d1kloa2 | 56 | Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: | 82.52 | |
| d1kloa1 | 55 | Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: | 80.04 |
| >d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=1.6e-06 Score=59.24 Aligned_cols=34 Identities=44% Similarity=1.088 Sum_probs=29.3
Q ss_pred CCC-CCCCCCCCEEeCCCC--ceeeCCCCcCCCCCcc
Q 005688 121 KSC-KSDCSGQGVCNHELG--QCRCFHGFRGKGCSER 154 (683)
Q Consensus 121 ~~C-~~~C~~~G~C~~~~G--~C~C~~G~~G~~Ce~~ 154 (683)
++| +++|.|+|+|....+ .|.|++||+|.+||+.
T Consensus 1 D~C~~~PC~ngg~C~~~~~~y~C~C~~G~~G~~Cei~ 37 (39)
T d1xkba1 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF 37 (39)
T ss_dssp CTTTTCCCCSSCEECCCSSSCCEECCTTEETTTTCEE
T ss_pred CcCCCCCCCCCcEEECCCCCEEEECCCCCCcCcCeEc
Confidence 468 789999999986544 8999999999999974
|
| >d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
| >d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
| >d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
| >d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
| >d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2nzwa1 c.87.1.11 (A:1-349) Alpha1,3-fucosyltransferase FucT {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
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| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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