Citrus Sinensis ID: 005696

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680--

MQHPWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLPKGNAMEKEGKTVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFPRPLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSEDTARAVNVVHVVDASGKFGGKQEPSSFIALYSTTPGKLTKEVEQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVPTIHVESEGFGIMDTKGNDNGRITKVSIDMKGSVRWSLAIDAEEIEDFTFKEGSEELVPRDEKSGMDGWHIIQFSGGKNAVSKFDLDLYWAKNSTESYHNANRKEKQRPLLKLRTDFDRLTPKTERVLSKLPAWCSLFGKSTSPQTLSFLNSLPVNF

ccccccccccEEEEEEEEccccccEEEEccccHHHHHHHHHHcccccccHHHHHHHHccccccccccHHHHHccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEccccccccccccEEEEEcccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEEccccEEEEEEEccccccEEEEcccccccccccccccccEEEEEEEccccccEEEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccEEEEccccccc

cccccHHccEEEEEEHHccccccEEEEcccccHHHHHHHHHHccccHHHHHHHHHHHccccccccccEEEEccccccccEEEEEcccEEEEEcccccccccccHHHHcHHHHHHHHHHHHccHHcccHHHcccccccccccEEEEEHHHEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHcccHHEEHEHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEcccEEEccccccEEEccccccccccccccHHHHHHcccccccccccccccccccccHHHHHcccccccccccccccccEEEEEEEEEcccccEEEEEEEEEccccEEEEEccEEEEEEEEcccccccccccccccccccEEEEEEccccccEEEEEEEEEccccccccccHHHHHccccEEEEccccccccHHHHHHHHHcccccccccccccHHHHHHHHcccccc

MQHPWSTTIRVAIDLEamgiggksglfqagphpwavENFAaaakypsgqvtaqdlfasgaitsatdFQVYKEVAglsgldfaytdksavyhtkndkldllkpgslqhLGENMLAFLLQAasstslpkgnamekegktvHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFIlpqissspvpyvanpwlaVGLFAAPAFLGALTGQHLGYIILKAYLANMFSkrmqlspivqADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALfwlvppafaygfleatltpvrfprpLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRfdrnpggtpewlGNVILAVFIAVVLCLTLVYLLSYVhlsgakrpiAIASCVLFVLSLILVLsgtvppfsedtaRAVNVVHVVDasgkfggkqepssfialysttpgkltKEVEQIKEGFVCGRDNVVDFVTLSMEYGcltydgteggwsqsdvptihvesegfgimdtkgndngrITKVSIDMKGSVRWSLAidaeeiedftfkegseelvprdeksgmdgwhiiqfsggknavskfdldlywaknstesyhnanrkekqrpllklrtdfdrltpktervlsklpawcslfgkstspqtlsflnslpvnf

MQHPWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLPKGNAMEKEGKTVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFPRPLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSEDTARAVNVVHVVDASgkfggkqepssfiALYSTTPGKLTKEVEQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVPTIHVESEGfgimdtkgndnGRITKVSIDMKGSVRWSLAIDaeeiedftfkegseelvprdeksgMDGWHIIQFSGGKNAVSKFDLDLYWAKNStesyhnanrkekqrpllklrtdfdrltpktervlskLPAWCSLFgkstspqtlsflnslpvnf

MQHPWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLPKGNAMEKEGKTVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLvfsvsfavviafiLPQISSSPVPYVANPWlavglfaapaflgalTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFprplklatlllglavpvlvsaGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIAscvlfvlslilvlsGTVPPFSEDTARAVNVVHVVDASGKFGGKQEPSSFIALYSTTPGKLTKEVEQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVPTIHVESEGFGIMDTKGNDNGRITKVSIDMKGSVRWSLAIDAEEIEDFTFKEGSEELVPRDEKSGMDGWHIIQFSGGKNAVSKFDLDLYWAKNSTESYHNANRKEKQRPLLKLRTDFDRLTPKTERVLSKLPAWCSLFGKSTSPQTLSFLNSLPVNF

****WSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQ******************TVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFPRPLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSEDTARAVNVVHVVDASGKFGG****SSFIALYSTTPGKLTKEVEQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVPTIHVESEGFGIMDTKGNDNGRITKVSIDMKGSVRWSLAIDAEEIEDFTFK**************MDGWHIIQFSGGKNAVSKFDLDLYWAKN*********************TDFDRLTPKTERVLSKLPAWCSLFGK*****************

*QHPWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASST*****************TAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFPRPLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSEDTARAVNVVHVVDASGKFGGKQEPSSFIALYSTTPGKLTKEVEQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVPTIHVESEGFGIMDTKGNDNGRITKVSIDMKGSVRWSLAIDAEEIEDFTFKEGSEELVP*DEKSGMDGWHIIQFSGGKNAVSKFDLDLYWAKNSTESYHNANRKEKQRPLLKLRTDFDRLTPKTERVLSKLPAWCSLFGKSTSPQTLSFLNSLPVNF

MQHPWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTS**********GKTVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFPRPLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSEDTARAVNVVHVVDASGKFGGKQEPSSFIALYSTTPGKLTKEVEQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVPTIHVESEGFGIMDTKGNDNGRITKVSIDMKGSVRWSLAIDAEEIEDFTFKEGSEELVPRDEKSGMDGWHIIQFSGGKNAVSKFDLDLYWAKNSTESYHNANRKEKQRPLLKLRTDFDRLTPKTERVLSKLPAWCSLFGKSTSPQTLSFLNSLPVNF

*QHPWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLPKGN***KEGKTVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFPRPLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSEDTARAVNVVHVVDASGKFGGKQEPSSFIALYSTTPGKLTKEVEQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVPTIHVESEGFGIMDTKGNDNGRITKVSIDMKGSVRWSLAIDAEEIEDFTFKEGSEELVPRDEKSGMDGWHIIQFSGGKNAVSKFDLDLYWAKNSTESYHNANRKEKQRPLLKLRTDFDRLTPKTERVLSKLPAWCSLFGKSTSPQTLSFLNSLPVNF

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		682	2.2.26 [Sep-21-2011]
Q3UVK0		898	Endoplasmic reticulum met	yes	no	0.589	0.447	0.262	6e-33
Q7Z2K6		904	Endoplasmic reticulum met	yes	no	0.585	0.441	0.266	3e-32
Q6UPR8		898	Endoplasmic reticulum met	yes	no	0.587	0.446	0.268	2e-31
Q0VGW4		876	Endoplasmic reticulum met	N/A	no	0.592	0.461	0.256	2e-29
Q09216		895	Uncharacterized protein B	yes	no	0.410	0.312	0.280	3e-27
Q18600		895	Uncharacterized zinc meta	no	no	0.348	0.265	0.26	1e-22
O94702		822	Uncharacterized zinc meta	yes	no	0.225	0.187	0.339	5e-16
A3LW86		937	Probable zinc metalloprot	yes	no	0.219	0.160	0.307	1e-14
Q750Z6		1011	Probable zinc metalloprot	yes	no	0.412	0.277	0.25	1e-14
Q0URQ5		959	Probable zinc metalloprot	N/A	no	0.451	0.321	0.245	1e-13

>sp\|Q3UVK0\|ERMP1_MOUSE Endoplasmic reticulum metallopeptidase 1 OS=Mus musculus GN=Ermp1 PE=1 SV=2	Back alignment and function desciption

 Score =  142 bits (359), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 119/454 (26%), Positives = 204/454 (44%), Gaps = 52/454 (11%)

Query: 2   QHPWSTTIRVAIDLEAMGIGGKSGLFQAGP-HPWAVENFAAAAKYPSGQVTAQDLFASGA 60
           QHPW++ IR  I+LEA G+GGK  +FQ GP +PW V+ + +AAK+P   V AQ++F SG 
Sbjct: 258 QHPWASLIRAFINLEAAGVGGKELVFQTGPENPWLVQAYVSAAKHPFASVVAQEVFQSGI 317

Query: 61  ITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAA 120
           I S TDF++Y++   + G+D A+ +   +YHTK D  D +   S+Q  G+N+LA L   A
Sbjct: 318 IPSDTDFRIYRDFGNIPGIDLAFIENGYIYHTKYDTADRILIDSIQRAGDNILAVLKHLA 377

Query: 121 SSTSLPKGNAMEKEGKTVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLV 180
           +S +L   +         H + V+FD+LG  ++ Y     ++++  V++  +L     L+
Sbjct: 378 TSDTLASSSEYR------HGSMVFFDVLGLLVIAYPSRVGSIINYMVVMAVVLYLGKKLL 431

Query: 181 MGGYPAA-------VSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAV 233
              +  A         L +T +S    LV  +  AV I+ I   +S     Y+A      
Sbjct: 432 RPKHRNANYMRDFLCGLGITFISWFTSLVTVLIIAVFISLIGQSLSWYNYFYIAVCLYGT 491

Query: 234 GLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQ 293
              A   F+  L  +         YL  +F                         + F+ 
Sbjct: 492 ATVAKIIFIHTLAKRFYYMNASDLYLGELFFD----------------------TSLFVH 529

Query: 294 WLILLALGNFYKIGSTFIALFWLVPPAFA----YGFLEATLTPVRFPRPLKLATLLLGLA 349
              L+AL  +    S F++  W+V P       Y   +      RF     +A  LLG+ 
Sbjct: 530 CAFLVAL-TYQGFCSAFMSAVWVVFPLLTKLCVYKDFKKHGAQGRF-----VALYLLGMF 583

Query: 350 VPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVH 409
           +P L        +  +   I+ R         E   +V+LA  +AV + +   Y +++++
Sbjct: 584 IPYLYGLYLIWAVFEMFTPILGR------SGSEIPPDVVLASILAVCVMILSSYFITFIY 637

Query: 410 LSGAKRPIAIASCVLFVLSLILVLSGTVPPFSED 443
           L  + +   +   ++  ++ +LV SG   P+S +
Sbjct: 638 LVNSTKKTILTLILVCAVTFLLVCSGAFFPYSSN 671

Within the ovary, required for the organization of somatic cells and oocytes into discrete follicular structures.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: -EC: .EC: -

>sp\|Q7Z2K6\|ERMP1_HUMAN Endoplasmic reticulum metallopeptidase 1 OS=Homo sapiens GN=ERMP1 PE=1 SV=2	Back alignment and function description

>sp\|Q6UPR8\|ERMP1_RAT Endoplasmic reticulum metallopeptidase 1 OS=Rattus norvegicus GN=Ermp1 PE=1 SV=1	Back alignment and function description

>sp\|Q0VGW4\|ERMP1_XENLA Endoplasmic reticulum metallopeptidase 1 OS=Xenopus laevis GN=ermp1 PE=2 SV=1	Back alignment and function description

>sp\|Q09216\|YP67_CAEEL Uncharacterized protein B0495.7 OS=Caenorhabditis elegans GN=B0495.7 PE=1 SV=2	Back alignment and function description

>sp\|Q18600\|YTV2_CAEEL Uncharacterized zinc metalloprotease C44B7.11 OS=Caenorhabditis elegans GN=C44B7.11 PE=1 SV=4	Back alignment and function description

>sp\|O94702\|YC52_SCHPO Uncharacterized zinc metalloprotease C1259.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1259.02c PE=3 SV=1	Back alignment and function description

>sp\|A3LW86\|M28P1_PICST Probable zinc metalloprotease PICST_46351 (Fragment) OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=PICST_46351 PE=3 SV=2	Back alignment and function description

>sp\|Q750Z6\|M28P1_ASHGO Probable zinc metalloprotease AGL209W OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=AGL209W PE=3 SV=1	Back alignment and function description

>sp\|Q0URQ5\|M28P1_PHANO Probable zinc metalloprotease SNOG_05559 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=SNOG_05559 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		682
225449044		900	PREDICTED: endoplasmic reticulum metallo	0.985	0.746	0.708	0.0
255584015		921	ATP binding protein, putative [Ricinus c	0.986	0.730	0.689	0.0
449449477		908	PREDICTED: endoplasmic reticulum metallo	0.976	0.733	0.654	0.0
356533971		912	PREDICTED: endoplasmic reticulum metallo	0.975	0.729	0.689	0.0
357443249		917	Endoplasmic reticulum metallopeptidase [	0.975	0.725	0.659	0.0
449519490		637	PREDICTED: endoplasmic reticulum metallo	0.932	0.998	0.649	0.0
297808135		911	hypothetical protein ARALYDRAFT_910108 [	0.969	0.725	0.603	0.0
15242031		910	vacuolar protein / peptidase dimerizatio	0.967	0.725	0.595	0.0
326494824		907	predicted protein [Hordeum vulgare subsp	0.979	0.736	0.567	0.0
357164731		909	PREDICTED: endoplasmic reticulum metallo	0.985	0.739	0.561	0.0

>gi\|225449044\|ref\|XP_002274159.1\| PREDICTED: endoplasmic reticulum metallopeptidase 1 [Vitis vinifera] gi\|296086015\|emb\|CBI31456.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1005 bits (2598), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/683 (70%), Positives = 583/683 (85%), Gaps = 11/683 (1%)

Query: 2   QHPWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAI 61
           QHPWS+TIR+AIDLEAMGIGGKS +FQAGPHP A+ENFA AAKYP+GQ+ +QD+F+SG I
Sbjct: 227 QHPWSSTIRMAIDLEAMGIGGKSSIFQAGPHPLAIENFAKAAKYPNGQIVSQDIFSSGVI 286

Query: 62  TSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAAS 121
            SATDFQVY+EVAGLSGLDFAYTD SAVYHTKNDKL+LLKPGSLQHLG+NMLAFLLQ A 
Sbjct: 287 KSATDFQVYQEVAGLSGLDFAYTDNSAVYHTKNDKLELLKPGSLQHLGDNMLAFLLQTAP 346

Query: 122 STSLPKGNAMEKEGKTVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVM 181
           S +LPKG AME E KT HETA++FDILGTYMV+YRQ FAN+LHNSVI+QS+LIW  SL+M
Sbjct: 347 S-NLPKGKAMEAEEKTGHETAIFFDILGTYMVVYRQRFANLLHNSVIMQSILIWVTSLLM 405

Query: 182 GGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAPAF 241
           GGYPAAVSLAL+CLS ILM +FS+SF++ + F+LP ISSSPVP+VANPWL VGLFAAPAF
Sbjct: 406 GGYPAAVSLALSCLSVILMWIFSLSFSIPVGFLLPLISSSPVPFVANPWLVVGLFAAPAF 465

Query: 242 LGALTGQHLGYIILKAYLANMFSKRMQ-LSPIVQADLIKLEAERWLFKAGFLQWLILLAL 300
           LGALTGQHLGY+IL +YL++  SKRMQ LSP++QAD+IK EAERWLFKAGF+QW +LL +
Sbjct: 466 LGALTGQHLGYLILHSYLSHASSKRMQNLSPVIQADVIKFEAERWLFKAGFVQWFVLLMV 525

Query: 301 GNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFPRPLKLATLLLGLAVPVLVSAGNFI 360
           GN+YKIGS+++AL WLV PAFAYGFLEATL+PVR PRPLK+ TLL+G+++P+L+SAG FI
Sbjct: 526 GNYYKIGSSYVALVWLVSPAFAYGFLEATLSPVRLPRPLKIVTLLMGISLPILLSAGMFI 585

Query: 361 RLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIA 420
           R+A  ++   VRFDRNPG TPEWLGNVI+A++IA V+CLTL YLLSY HLSGAK+ I ++
Sbjct: 586 RMAGTLIGTAVRFDRNPGSTPEWLGNVIIAIYIAAVICLTLAYLLSYFHLSGAKKSIVLS 645

Query: 421 SCVLFVLSLILVLSGTVPPFSEDTARAVNVVHVVDASGKFGGKQEPSSFIALYSTTPGKL 480
           +C+LF LSL +VLSGTVP F+EDTARAVNVVHVVD + K+G  Q+P S+I+++STTPG L
Sbjct: 646 TCMLFGLSLAVVLSGTVPSFTEDTARAVNVVHVVDTTEKYGEMQDPRSYISIFSTTPGNL 705

Query: 481 TKEVEQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVPTIHVESEGFGIMDT 540
            KEVEQI EGFVCGRD V+DFVT S++YGCLT D   GGWS+SD+P +HV+S      DT
Sbjct: 706 IKEVEQINEGFVCGRDKVLDFVTFSVKYGCLTNDDIGGGWSKSDIPVLHVDS------DT 759

Query: 541 KGNDNGRITKVSIDMKGSVRWSLAIDAEEIEDFTFKEGSEELVPRDEKSGMDGWHIIQFS 600
           +G  +GR T++SID K S RWSLAI+ +EIEDF FKE S+ELVP   K   +GWHI QFS
Sbjct: 760 EG--DGRTTQISIDTKVSTRWSLAINTQEIEDFLFKENSDELVPLGGKGSNNGWHIFQFS 817

Query: 601 GGKNAVSKFDLDLYWAKNSTESYHNAN-RKEKQRPLLKLRTDFDRLTPKTERVLSKLPAW 659
           GGKN+ ++FDL L+W KNST+S HNA+ ++ +QRPLLKLRTD +RLTPK  RVL+KLP+W
Sbjct: 818 GGKNSPTRFDLTLFWRKNSTKSAHNADGQRAEQRPLLKLRTDVNRLTPKAARVLTKLPSW 877

Query: 660 CSLFGKSTSPQTLSFLNSLPVNF 682
           CS FGKSTSP  L+FL SLPV F
Sbjct: 878 CSQFGKSTSPYNLAFLTSLPVLF 900

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255584015\|ref\|XP_002532753.1\| ATP binding protein, putative [Ricinus communis] gi\|223527504\|gb\|EEF29630.1\| ATP binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449449477\|ref\|XP_004142491.1\| PREDICTED: endoplasmic reticulum metallopeptidase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356533971\|ref\|XP_003535531.1\| PREDICTED: endoplasmic reticulum metallopeptidase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|357443249\|ref\|XP_003591902.1\| Endoplasmic reticulum metallopeptidase [Medicago truncatula] gi\|355480950\|gb\|AES62153.1\| Endoplasmic reticulum metallopeptidase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449519490\|ref\|XP_004166768.1\| PREDICTED: endoplasmic reticulum metallopeptidase 1-like, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297808135\|ref\|XP_002871951.1\| hypothetical protein ARALYDRAFT_910108 [Arabidopsis lyrata subsp. lyrata] gi\|297317788\|gb\|EFH48210.1\| hypothetical protein ARALYDRAFT_910108 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15242031\|ref\|NP_197566.1\| vacuolar protein / peptidase dimerization domain-containing protein [Arabidopsis thaliana] gi\|110741500\|dbj\|BAE98701.1\| 24 kDa vacuolar protein - like [Arabidopsis thaliana] gi\|332005489\|gb\|AED92872.1\| vacuolar protein / peptidase dimerization domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|326494824\|dbj\|BAJ94531.1\| predicted protein [Hordeum vulgare subsp. vulgare] gi\|326513062\|dbj\|BAK03438.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

>gi\|357164731\|ref\|XP_003580148.1\| PREDICTED: endoplasmic reticulum metallopeptidase 1-like [Brachypodium distachyon]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		682
TAIR\|locus:2180494		910	AT5G20660 [Arabidopsis thalian	0.967	0.725	0.538	4.9e-195
UNIPROTKB\|B3KSB1		351	ERMP1 "Endoplasmic reticulum m	0.244	0.475	0.377	2.5e-30
UNIPROTKB\|E1C3Q6		885	ERMP1 "Uncharacterized protein	0.253	0.195	0.375	5.3e-28
UNIPROTKB\|F1MI95		892	ERMP1 "Uncharacterized protein	0.263	0.201	0.363	9e-28
UNIPROTKB\|F1PSG1		896	ERMP1 "Uncharacterized protein	0.244	0.186	0.382	9.7e-28
UNIPROTKB\|E7ER77		841	ERMP1 "Endoplasmic reticulum m	0.244	0.198	0.377	1.2e-27
UNIPROTKB\|Q7Z2K6		904	ERMP1 "Endoplasmic reticulum m	0.244	0.184	0.377	1.6e-27
MGI\|MGI:106250		898	Ermp1 "endoplasmic reticulum m	0.244	0.185	0.382	3.3e-27
RGD\|727831		898	Ermp1 "endoplasmic reticulum m	0.244	0.185	0.382	7.3e-27
UNIPROTKB\|F1SMM0		905	ERMP1 "Uncharacterized protein	0.244	0.184	0.365	9.1e-27

TAIR\|locus:2180494 AT5G20660 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1889 (670.0 bits), Expect = 4.9e-195, P = 4.9e-195
 Identities = 368/683 (53%), Positives = 472/683 (69%)

Query:     2 QHPWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAI 61
             QHPWS+T+R+AIDLEAMG GGKS +FQAGP PWA+ENFA AAKYPSGQ+  QDLF SG I
Sbjct:   243 QHPWSSTVRLAIDLEAMGTGGKSSIFQAGPSPWAIENFALAAKYPSGQIIGQDLFTSGII 302

Query:    62 TSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAAS 121
              SATDFQVYKEVAGLSGLDFA+ D +AVYHTKNDK++L+KPGSLQHLGENMLAFLL+ AS
Sbjct:   303 KSATDFQVYKEVAGLSGLDFAFADNTAVYHTKNDKIELIKPGSLQHLGENMLAFLLRVAS 362

Query:   122 STSLPKGNAMEKEGKTVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVM 181
             S+ LPK   ++ E ++  ++AVYFD+LG YM++YRQ  A ML+ SVI+QS+LIW  S+ M
Sbjct:   363 SSDLPKDKTLQGEERSNPDSAVYFDVLGKYMIVYRQSLATMLYVSVIMQSILIWVLSVFM 422

Query:   182 GGYPAAVSLALTCLSAILMLXXXXXXXXXXXXXLPQISSSPVPYVANPWXXXXXXXXXXX 241
             GGYPA VSL L+CLS IL               LP ISSSPVP+ +NPW           
Sbjct:   423 GGYPAVVSLILSCLSIILSWIFSVAFSVAVAFILPWISSSPVPFASNPWMVVGLFVSPAI 482

Query:   242 XXXXTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLALG 301
                 +GQH+ +I L+   +N  S +MQ+SP ++ +L +LEAERWLFK+GF+QWL+LLALG
Sbjct:   483 LGSISGQHVAFIFLRKKSSNRNSNKMQVSPRLRDNLARLEAERWLFKSGFIQWLVLLALG 542

Query:   302 NFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFXXXXXXXXXXXXXXXXXXXXXGNFIR 361
              +YK+GST++AL WLVPPAFAYG LEATL+P+R                      G+FI+
Sbjct:   543 TYYKLGSTYLALVWLVPPAFAYGLLEATLSPIRLPKPLKLATLLISLAVPILVSSGSFIQ 602

Query:   362 LANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIAX 421
             L   ++ +++RFD NPG TPEWLG+ ++AV IA  + L++VYLL+Y+HLSGAK+ I  A 
Sbjct:   603 LTGTMIGMLIRFDSNPGVTPEWLGSALIAVAIATFISLSMVYLLAYIHLSGAKKSIVTAL 662

Query:   422 XXXXXXXXXXXXXGTVPPFSEDTARAVNVVHVVDASGKFGGKQEPSSFIALYSTTPGKLT 481
                          G +P F+EDTARAVNVVHVVD SG     Q+  +FI+L+S TPG L 
Sbjct:   663 CIITALSLALVSSGVLPAFTEDTARAVNVVHVVDTSG-----QDQVAFISLFSNTPGNLN 717

Query:   482 KEVEQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVPTIHVESEGFGIMDTK 541
              E EQIKEGF CGR+N +DFV+   +Y C+T    E GW + D+P + V       ++ K
Sbjct:   718 MEAEQIKEGFRCGRENKIDFVSFEAKYNCVTKKDAEVGWDKHDIPVLRV-------INDK 770

Query:   542 GNDNGRITKVSIDMKGSVRWSLAIDAEEIEDFTFKEGSEE----LVPRDEKSGMD-GWHI 596
               + GR+  VS+D  GS RW+L ID +EIEDFT + G EE    ++ R EKS  + GWH 
Sbjct:   771 EREGGRVIAVSMDTGGSSRWTLRIDMDEIEDFTMQVGEEEEEELMIERGEKSSNEEGWHQ 830

Query:   597 IQFSGGKNAVSKFDLDLYWAKNSTESYHNANRKEKQRPLLKLRTDFDRLTPKTERVLSKL 656
             IQF+GGK A + F L LY  +  ++       K+KQRPLLKLRTD +R TP+ +RVL +L
Sbjct:   831 IQFAGGKKAPTSFVLKLYKEEEVSDD------KKKQRPLLKLRTDLNRRTPQVQRVLERL 884

Query:   657 PAWCSLFGKSTSPQTLSFLNSLP 679
             P +C++FGKSTSP TL+FL SLP
Sbjct:   885 PPFCTMFGKSTSPFTLAFLASLP 907

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB\|B3KSB1 ERMP1 "Endoplasmic reticulum metallopeptidase 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C3Q6 ERMP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MI95 ERMP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PSG1 ERMP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E7ER77 ERMP1 "Endoplasmic reticulum metallopeptidase 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7Z2K6 ERMP1 "Endoplasmic reticulum metallopeptidase 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:106250 Ermp1 "endoplasmic reticulum metallopeptidase 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|727831 Ermp1 "endoplasmic reticulum metallopeptidase 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SMM0 ERMP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00018186001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (900 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		682
cd03875		307	cd03875, M28_Fxna_like, M28 Zn-peptidase Endoplasm	2e-57
pfam04389		173	pfam04389, Peptidase_M28, Peptidase family M28	2e-17

>gnl\|CDD\|193497 cd03875, M28_Fxna_like, M28 Zn-peptidase Endoplasmic reticulum metallopeptidase 1	Back alignment and domain information

 Score =  196 bits (501), Expect = 2e-57
 Identities = 76/154 (49%), Positives = 98/154 (63%), Gaps = 6/154 (3%)

Query: 2   QHPWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAI 61
           QHPW+  +R  I+LEA G GG++ LFQ GP PW VE +  AA +P   V AQD+F SG I
Sbjct: 160 QHPWAKNVRAFINLEAAGAGGRAILFQTGPGPWLVEAYYKAAPHPFATVLAQDVFQSGLI 219

Query: 62  TSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAAS 121
            S TDF+V++E  GL GLD A+ +   VYHTK D  D + PGSLQH+GEN+LA L   A+
Sbjct: 220 PSDTDFRVFREYGGLPGLDIAFIENGYVYHTKYDTADHISPGSLQHMGENLLALLRYLAN 279

Query: 122 STSLPKGNAMEKEGKTVHETAVYFDILGTYMVLY 155
           S  L      E + +     AVYFD+LG + V+Y
Sbjct: 280 SDEL------ENDSEYRGGDAVYFDLLGLFFVVY 307

Peptidase family M28; Endoplasmic reticulum metallopeptidase 1 (ERMP1; Felix-ina, FXNA or Fxna peptidase; KIAA1815) subfamily. ERMP1 is a multi-pass membrane protein located in the endoplasmic reticulum membrane. In humans, Fxna may play a crucial role in processing proteins required for the organization of somatic cells and oocytes into discrete follicular structures, although which proteins are hydrolyzed has not yet been determined. Another member of this cluster is the 24-kDa vacuolar protein (VP24) which is probably involved in the formation of intravacuolar pigmented globules (cyanoplasts) in highly anthocyanin-containing vacuoles; however, the biological function of the C-terminal region which includes the putative transmembrane metallopeptidase domain is unknown. Length = 307

>gnl\|CDD\|218057 pfam04389, Peptidase_M28, Peptidase family M28	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		682
KOG2194		834	consensus Aminopeptidases of the M20 family [Postt	100.0
PF04389		179	Peptidase_M28: Peptidase family M28; InterPro: IPR	98.91
KOG2195		702	consensus Transferrin receptor and related protein	95.0
PRK10199		346	alkaline phosphatase isozyme conversion aminopepti	91.71
PF09940		386	DUF2172: Domain of unknown function (DUF2172); Int	81.32

>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=3.7e-120  Score=1032.28  Aligned_cols=594  Identities=29%  Similarity=0.473  Sum_probs=521.3

Q ss_pred             CCCCCcccCcEEEeecccCCCCcceeeccCCCHHHHHHHHHhCCCCcccchHHHHHhcCCCCCCCcchhhhhcCCCceee
Q 005696            1 MQHPWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLD   80 (682)
Q Consensus         1 TqH~wa~~v~a~iNLEa~G~gGr~~lFqtg~~~~lv~~y~~~a~~P~a~sla~eif~~GiipsdTDf~if~~~g~~~GlD   80 (682)
                      |||||+++||++|||||+|+||||+|||+||++|++|+|++++|||||++++||+||+|+|||||||||||||||+||||
T Consensus       209 tQH~w~~~~ka~INLea~GsGGreiLFQagp~~wl~k~Y~~~~phPf~stlgee~Fq~g~IpSdTDfrif~eyg~l~GLD  288 (834)
T KOG2194|consen  209 TQHPWSKNIKAVINLEAAGSGGREILFQAGPNHWLLKAYLQAAPHPFASTLGEELFQSGIIPSDTDFRIFREYGHLPGLD  288 (834)
T ss_pred             ecChhhhhhheEEeccccCcccceeEEecCCchHHHHHHHhhCCCchhhhhHHHhhhcCcCccccchHHHHHhCCcccce
Confidence            79999999999999999999999999999996699999999999999999999999999999999999999999999999


Q ss_pred             EeeecCCCccCCCCCCcCCCChhhHHHHHHHHHHHHHHhhcCCCCCCCCCccccCCCCCCCeEEecccCceEEEEechhH
Q 005696           81 FAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLPKGNAMEKEGKTVHETAVYFDILGTYMVLYRQGFA  160 (682)
Q Consensus        81 ~A~~~n~~~YHT~~D~~~~i~~gslQh~Gdn~L~l~~~la~~~~l~~~~~~~~~~~~~~~~~VyFd~lG~~~v~y~~~~~  160 (682)
                      ||++.|||+|||++|..++++|||+||+|||+|+++|.++|+ |++      +.++.+++ +||||++|+||+.|+++++
T Consensus       289 ~A~~~Ng~vYHTk~D~~~~i~~gs~q~tGen~L~~v~~lan~-el~------~~~~~~~g-~vyfdv~g~~~~~y~~~~~  360 (834)
T KOG2194|consen  289 MAFVKNGYVYHTKYDGIQYIPPGSLQHTGENILALVRSLANS-ELD------NSTERSKG-TVYFDVVGKYFLAYSESTG  360 (834)
T ss_pred             eeeeeccceEEeecccccccCcchhhhhhhHHHHHHHHHhch-hhc------cccccCCC-ceehhhhhhhhheeehhhh
Confidence            999999999999999999999999999999999999999998 554      24556667 9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHHHHHH
Q 005696          161 NMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAPA  240 (682)
Q Consensus       161 ~~ln~~v~~~~lll~~~sl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vA~~~~~~~~~~msw~s~~~l~igLy~~pa  240 (682)
                      ++||+++..   .++ ....|++.+.++++.++|+.+++++++++++++++|++++.+ +.+|+||++||+++|||.||+
T Consensus       361 ~iLNi~i~~---~i~-l~~~~~g~~~~~~f~~~~~~~i~s~~~~~~l~~~~a~~l~~v-~l~~sw~s~p~l~~~ly~~p~  435 (834)
T KOG2194|consen  361 VILNITICI---SIW-LMSLRSGSSQLGKFILACLLQILSIVVAIGLPVLVALFLDWV-GLPLSWFSNPWLLLGLYYLPS  435 (834)
T ss_pred             hhhhhhhhh---hhh-hhhhcccchhhhhHHHHHHHHHHHHHHHHhhHHHHHHHhhcc-cccceeecchHHHHHHHHhHH
Confidence            999933222   222 334444444688999999999999999999999999999998 469999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHhHHH
Q 005696          241 FLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPA  320 (682)
Q Consensus       241 l~g~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~a~~~~~~~l~~~~t~~~i~SaYl~~~~~~f~~  320 (682)
                      ++|+.++|.++. ...|+.        .+.        .++.+++.+|+   +|++|++++|++|+||+|++++|+++|+
T Consensus       436 ~~gl~~~~~~y~-~~~~~~--------~~~--------~~~~~ql~~h~---~l~~l~~~~t~y~I~S~y~~~~~~~~~v  495 (834)
T KOG2194|consen  436 LFGLAILQALYA-KRSKRH--------SLE--------YLQHDQLLLHS---LLSILLIIMTYYGIRSAYLPLLLLLFYV  495 (834)
T ss_pred             HHHhhHHHHHHH-hhcccc--------ccc--------hhhHHHHHHHH---HHHHHHHHheecccchhHHHHHHHHHHH
Confidence            999999998732 221111        111        13567888887   7888999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCchHHHHHHHhHHhHHHHHHHHHHHHHHHhccccccCCCCCCCCcccchHHHHHHHHHHHHHH
Q 005696          321 FAYGFLEATLTPVRFPRPLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLT  400 (682)
Q Consensus       321 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~P~l~~~~l~~~~~~~fiPm~gR~g~~~~~~Pd~~~d~iIA~l~a~~~~l~  400 (682)
                      ++  .++++.+++|.++..|..++++||+.|+.+.+|.++.++.+|||||||+|.+.  |||    .+||.++++++.+.
T Consensus       496 ~~--~~~~~~~~l~~~~~~~~~~~~i~~~~p~~~~ay~~~~~~~~fipm~Gr~g~~~--nPd----~~i~~~~~~~~~l~  567 (834)
T KOG2194|consen  496 IS--YLLNTLTILHLCGTLYLITLLICQVGPFLFAAYSTYSLVRTFIPMMGRFGNAS--NPD----LSISFLNAFGANLI  567 (834)
T ss_pred             HH--HHHhhceeeccCCceeeeeeeeeehHhHHHHHHHHHHHHHeeeccccccCCCC--Cch----HHHHHHHHHHHHhh
Confidence            99  55778899999999999999999999999999999999999999999999765  998    99999999999999


Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhCCCCCCCCCC-cceeEEEEEEecCCCCCCC---CCCCceeecccCC
Q 005696          401 LVYLLSYVHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSEDT-ARAVNVVHVVDASGKFGGK---QEPSSFIALYSTT  476 (682)
Q Consensus       401 ~~fl~Pli~~~~~~~~i~~~l~~v~~~~~~l~~~~~~fPy~~~t-~~Rv~v~Hv~r~~~~~~~~---~D~~~~~~l~~~~  476 (682)
                      ++|++|++|+||+++.|+.++++++.+++++++|+++|||++++ +||++++|++|+++++.+.   +|+++++...|+.
T Consensus       568 ~~f~i~l~~~fr~~~~i~~~l~~I~~~~~~i~~T~~~fPy~~~~~~~r~~~lH~~rtf~~~~~~~~~~ds~~~i~~~D~r  647 (834)
T KOG2194|consen  568 VGFLIPLVHLFRRSKSIILGLFGITAVILIIASTSIGFPYRPKTTVQRVPVLHVRRTFYDRDGTSSQNDSGYFINSQDRR  647 (834)
T ss_pred             HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHhcCCcCCccccccceeEEEEecccceecccCceeecccceeeeecccc
Confidence            99999999999999999999988888888889999999999774 5799999999999877776   7888888887655


Q ss_pred             CC--------CchhhH---hhccccccCCCCCccccccceeeeeeeeecCCCCcccCCCCC-------ceeeeccccccc
Q 005696          477 PG--------KLTKEV---EQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVP-------TIHVESEGFGIM  538 (682)
Q Consensus       477 ~~--------~l~~~~---~~c~~e~~CG~p~~~df~~~~~y~~~~~~~~~~~~Wlp~~~P-------~l~~~~k~~~~~  538 (682)
                      ..        ++++++   .+|+.+++||+|         +|+  |.+.+.+++|+|+++|       .+.+++|+    
T Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p---------~y~--w~~~~~~~~~vp~~~~v~~~~~~~l~l~sk~----  712 (834)
T KOG2194|consen  648 GAEVLPFTKSNLTDLSSVQADCDDEMMCGMP---------VYN--WIKPREQSLWVPNPEPVIGPYPPNLKLLSKT----  712 (834)
T ss_pred             cccCCcchhhcccccccccccccccccCCce---------eee--ccccCccceEecCCccccCCCCceEEEeecc----
Confidence            32        233443   568999999999         887  9999999999999876       45555555    


Q ss_pred             cccccCCCCeEEEEEEEcCCCcEEEEEec---eEecceeeccCCcccccCCcCCCCCCcEEEEEEcC-CCCceEEEEEEE
Q 005696          539 DTKGNDNGRITKVSIDMKGSVRWSLAIDA---EEIEDFTFKEGSEELVPRDEKSGMDGWHIIQFSGG-KNAVSKFDLDLY  614 (682)
Q Consensus       539 ~~~~~~~~~~~r~~f~~~gp~~~sl~I~p---~~i~~WSf~~~~~~~~~~~~~~~~~~~y~i~~s~G-~~sP~~F~lel~  614 (682)
                         ..+ +++.|++|+++|++||++||+|   +++.+|||.++   +  +.+  + ..+|+||++|| ++.|++||+|++
T Consensus       713 ---~~~-~~~~r~~~~i~~~d~~s~~i~p~~d~~~~~wsf~~~---~--~~~--~-~~~~~i~~~yg~~~~p~~F~lel~  780 (834)
T KOG2194|consen  713 ---SLD-NGNLRYEFSITGTDHISLFISPLNDVKVLDWSFTTS---P--LTE--N-KTPYHIYFSYGLDSTPLNFWLELE  780 (834)
T ss_pred             ---ccC-CCceEEEEEEeccCceEEEEEecCCceEEEEeccCC---c--ccc--c-CCceEEEEEeecCCCCceEEEEEe
Confidence               554 6689999999999999999999   59999999644   4  333  2 22699999999 899999999999


Q ss_pred             eccCCccccccccccccCCCeEEEe------ccccCCCHHHHHHHhcCCCcccccCCCCCcchhhh
Q 005696          615 WAKNSTESYHNANRKEKQRPLLKLR------TDFDRLTPKTERVLSKLPAWCSLFGKSTSPQTLSF  674 (682)
Q Consensus       615 ~~~~~~~~~~~~~~~~~~~p~~~l~------~~~~~~t~~~~~fl~~fP~wa~~fgk~~sp~~l~~  674 (682)
                      +.++           ++++| +|++      +|.+++||+.++|+++||+||+.++|++|+....|
T Consensus       781 ~~~~-----------~~~v~-~k~~~~~h~~~~~~~~t~~~~~~~~~lP~~~~~~~~~~~~~~~~~  834 (834)
T KOG2194|consen  781 KEEG-----------VTDVP-FKLGVSAHYIHDLELITPEYKEFLETLPSWAATVDWSTSYESWIF  834 (834)
T ss_pred             eccC-----------ccCCc-eEEeeeeeeccchhhcCHHHHHHHHhCCchhhccccccchhheeC
Confidence            9944           77888 8888      57899999999999999999999999999987654

>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]	Back alignment and domain information

>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional	Back alignment and domain information

>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		682
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3gux_A		314	Putative Zn-dependent exopeptidase; aminopeptidase	4e-07
3tc8_A		309	Leucine aminopeptidase; phosphorylase/hydrolase-li	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 52.9 bits (126), Expect = 3e-07
 Identities = 74/519 (14%), Positives = 145/519 (27%), Gaps = 154/519 (29%)

Query: 229 PWLAVGLFAAPAFLGALTGQHLGYIILKAYLAN---MFSK----RMQLSPIVQADLIKLE 281
            +L   +          +     YI  +  L N   +F+K    R+Q    ++  L++L 
Sbjct: 92  KFLMSPIKTEQR---QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 282 AERWLF---KAGF-LQWLILLALGNFYKIGSTF-IALFWLVPPAFAYGFLEATLTPVRFP 336
             + +      G    W+ L      YK+       +FWL             L     P
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVC-LSYKVQCKMDFKIFWL------------NLKNCNSP 195

Query: 337 RPL--KLATLLLGL------------AVPV-LVSAGNFIR--------------LANVIV 367
             +   L  LL  +             + + + S    +R              L NV  
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 368 AIVVR-FD---------RNPGGTPEWLGNVILAVFIAVVLCLTLV------YLLSYVHLS 411
           A     F+         R    T ++L              +TL        LL Y+   
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 412 GAKRPIAIASCVLFVLSLILVLSGTVPPFSEDTARAVN--------VVHVVDASGKFGGK 463
               P  + +     LS+I           +  A   N        +  ++++S      
Sbjct: 315 PQDLPREVLTTNPRRLSII----AES--IRDGLATWDNWKHVNCDKLTTIIESSLN---V 365

Query: 464 QEPSSFIALYSTTPGKLTKEVEQIKEGFVCGRDNV-VDFVTLSMEYGCLTYDGTEGGWSQ 522
            EP+ +  ++               +       +  +  + LS+    +        W  
Sbjct: 366 LEPAEYRKMF---------------DRLSVFPPSAHIPTILLSL----I--------WFD 398

Query: 523 S---DVPTIHVESEGFGIMDTKGNDNGRIT--KVSIDMKGSVRWSLAIDAEEIEDFTFKE 577
               DV  +  +   + +++ K      I+   + +++K  +    A+    ++ +   +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVE-KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 578 GSEELVPRDEKSGMDGWHIIQFSGGKNAVSKFDLDLYWAKNSTESYH--NANRKEKQRPL 635
                         D   +              LD Y+   S   +H  N    E+    
Sbjct: 458 TF------------DSDDL----------IPPYLDQYFY--SHIGHHLKNIEHPERMTLF 493

Query: 636 LKLRTDFDRLTPKTERVLSKLPAWCSLFGKSTSPQTLSF 674
             +  DF  L  K     +   AW +      + Q L F
Sbjct: 494 RMVFLDFRFLEQKIRHDST---AWNASGSILNTLQQLKF 529

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} Length = 314	Back alignment and structure

>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} Length = 309	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		682
3kas_A		640	Transferrin receptor protein 1; transferrin recept	99.39
3fed_A		707	Glutamate carboxypeptidase III; metallopeptidase,	99.23
4fuu_A		309	Leucine aminopeptidase; phosphorylase/hydrolase li	99.11
3tc8_A		309	Leucine aminopeptidase; phosphorylase/hydrolase-li	98.66
3gux_A		314	Putative Zn-dependent exopeptidase; aminopeptidase	98.61
4f9u_A		312	CG32412; alpha/beta hydrolase, PGlu formation, PE,	98.53
1tkj_A		284	Aminopeptidase, SGAP; double-zinc metalloproteinas	98.53
4fai_A		330	CG5976, isoform B; alpha/beta hydrolase, PGlu form	98.46
3iib_A		444	Peptidase M28; YP_926796.1, structural genomics, J	98.44
2afw_A		329	Glutaminyl-peptide cyclotransferase; alpha-beta pr	98.35
2ek8_A		421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	98.27
3pb6_X		330	Glutaminyl-peptide cyclotransferase-like protein;	98.2
1rtq_A		299	Bacterial leucyl aminopeptidase; bimetallic, zinc,	97.86
3k9t_A		435	Putative peptidase; structural genomics, joint cen	97.44

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A	Back alignment and structure

Probab=99.39  E-value=1.5e-13  Score=158.08  Aligned_cols=123  Identities=16%  Similarity=0.141  Sum_probs=103.1

Q ss_pred             CcccCcEEEeecccCCCCcceeeccCC-CHHHHHHHHHhCCCCccc-chHHH-HHh--cCCCCCCCcchhhhhcCCCcee
Q 005696            5 WSTTIRVAIDLEAMGIGGKSGLFQAGP-HPWAVENFAAAAKYPSGQ-VTAQD-LFA--SGAITSATDFQVYKEVAGLSGL   79 (682)
Q Consensus         5 wa~~v~a~iNLEa~G~gGr~~lFqtg~-~~~lv~~y~~~a~~P~a~-sla~e-if~--~GiipsdTDf~if~~~g~~~Gl   79 (682)
                      +.+++.++||+|++|+|++.+.+|++| ..++++.+++.++||+++ ++.++ .++  .+.+|++|||++|.+++||||+
T Consensus       354 l~~~~~a~iNlD~~~~G~~~l~~~~~p~l~~l~~~~~~~v~~P~~~~tl~~~~~w~~~~~~~~~~sD~~~F~~~~GIP~~  433 (640)
T 3kas_A          354 LHLKAFTYINLDKAVLGTSNFKVSASPLLYTLIEKTMQNVKHPVTGQFLYQDSNWASKVEKLTLDNAAFPFLAYSGIPAV  433 (640)
T ss_dssp             GGGTEEEEEECTTCBSCSSEEEEEECGGGHHHHHHHHTTCBCTTTCSBSCCCTTGGGGCCCCCTTSTHHHHHHHHCCCEE
T ss_pred             hhhCEEEEEecccCccCCCceEEEeCHHHHHHHHHHHHhCCCCCCCCceecccccccccCCCCCCcchHHHHHhCCCCee
Confidence            458999999999999999999999888 488999999989999874 44332 343  5789999999999999999999


Q ss_pred             eEeeecC-CCc-cCCCCCCcCCCCh------hhHHHHHHHHHHHHHHhhcCCCCCC
Q 005696           80 DFAYTDK-SAV-YHTKNDKLDLLKP------GSLQHLGENMLAFLLQAASSTSLPK  127 (682)
Q Consensus        80 D~A~~~n-~~~-YHT~~D~~~~i~~------gslQh~Gdn~L~l~~~la~~~~l~~  127 (682)
                      |++|..+ +|. |||++|+++++++      ...+.++.-+-.++.+|++++.++-
T Consensus       434 ~~~~~~~~~y~~yHT~~Dt~~~i~~~~~~~~~~h~~~a~~~g~l~l~La~~~~lP~  489 (640)
T 3kas_A          434 SFCFCEDTDYPYLGTTMDTYKELIERIPELNKVARAAAEVAGQFVIKLTHDVELNL  489 (640)
T ss_dssp             EEEEECSSCCTTTTSTTCCHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred             eccccCCCCCCCcCCccccHHHHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            9999987 564 9999999998765      3466778888889999999887764

PyMOL of 3kas

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...	Back alignment and structure

>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}	Back alignment and structure

>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482}	Back alignment and structure

>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*	Back alignment and structure

>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A	Back alignment and structure

>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*	Back alignment and structure

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}	Back alignment and structure

>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...	Back alignment and structure

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*	Back alignment and structure

>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X*	Back alignment and structure

>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...	Back alignment and structure

>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		682
d2afwa1		329	c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransf	6e-07

>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} Length = 329	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Glutaminyl-peptide cyclotransferase-like
domain: Glutaminyl-peptide cyclotransferase, QPCT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 6e-07
 Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 13/121 (10%)

Query: 8   TIRVAIDLEAMGIGGKSGLFQAGPHPWAVE----------NFAAAAKYPSGQVTAQDLFA 57
            + + + L+ +G    +            E                 +       Q+   
Sbjct: 208 GMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQAIEHELHELGLLKDHSLEGRYFQNYSY 267

Query: 58  SGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLL 117
            G I    D   +    G+  L    +    V+HT +D  + L   ++ +L + +  F+L
Sbjct: 268 GGVIQD--DHIPFLR-RGVPVLHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVFVL 324

Query: 118 Q 118
           +
Sbjct: 325 E 325

PyMOL of d2afwa1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		682
d2afwa1		329	Glutaminyl-peptide cyclotransferase, QPCT {Human (	98.71
d1de4c3		294	Transferrin receptor ectodomain, protease-like dom	98.5
d3bi1a3		304	Glutamate carboxypeptidase II FOLH1 {Human (Homo s	98.43
d1tkja1		277	Aminopeptidase {Streptomyces griseus [TaxId: 1911]	98.43
d1rtqa_		291	Aminopeptidase {Aeromonas proteolytica [TaxId: 671	97.98
d1fnoa4		295	Peptidase T (tripeptidase), catalytic domain {Salm	93.8
g1q7l.1		280	Aminoacylase-1, catalytic domain {Human (Homo sapi	88.38

>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Glutaminyl-peptide cyclotransferase-like
domain: Glutaminyl-peptide cyclotransferase, QPCT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.8e-08  Score=104.18  Aligned_cols=110  Identities=13%  Similarity=0.133  Sum_probs=76.4

Q ss_pred             ccCcEEEeecccCCCCcceeeccCCCHHHH-------HHHHHhCCCCcccchHHHHHhcCC--CCCCCcchhhhhcCCCc
Q 005696            7 TTIRVAIDLEAMGIGGKSGLFQAGPHPWAV-------ENFAAAAKYPSGQVTAQDLFASGA--ITSATDFQVYKEVAGLS   77 (682)
Q Consensus         7 ~~v~a~iNLEa~G~gGr~~lFqtg~~~~lv-------~~y~~~a~~P~a~sla~eif~~Gi--ipsdTDf~if~~~g~~~   77 (682)
                      ++++++||+|+.|.+++.+..+.....+..       +...+ .............+....  -....|...|.+ .|+|
T Consensus       207 ~~i~~~inlD~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~SDH~pF~~-~GIP  284 (329)
T d2afwa1         207 HGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQAIEHELHE-LGLLKDHSLEGRYFQNYSYGGVIQDDHIPFLR-RGVP  284 (329)
T ss_dssp             TTEEEEEEECSCCSSSCCBCCCCGGGHHHHHHHHHHHHHHHH-TTCSSSCCSTTCSBCSCCCCSCCCSTTHHHHT-TTCC
T ss_pred             hceeeeeeeccccCCCCceeEeecccchHhHHHHHHHHHHHH-hhhhccccccccccccccCCCCCCCchHHHHH-CCCC
Confidence            578999999999999998876533322221       11222 112221122111221100  112359999999 7899


Q ss_pred             eeeEeeecCCCccCCCCCCcCCCChhhHHHHHHHHHHHHHH
Q 005696           78 GLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQ  118 (682)
Q Consensus        78 GlD~A~~~n~~~YHT~~D~~~~i~~gslQh~Gdn~L~l~~~  118 (682)
                      +++++....+.+|||+.|++|++++++||+.|..+.+++.+
T Consensus       285 ~~~~~~~~~~~~yHt~~Dt~d~ld~~~l~~v~~~l~~~v~e  325 (329)
T d2afwa1         285 VLHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVFVLE  325 (329)
T ss_dssp             EEEECCSSCCTTTTSTTCSSTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCCCCCCcCchhhCCHHHHHHHHHHHHHHHHH
Confidence            99999888888999999999999999999999999998875

PyMOL of d2afwa1

>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]}	Back information, alignment and structure

>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]}	Back information, alignment and structure

>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure