Citrus Sinensis ID: 005706

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680--
MKKRLQRIADFLGSCDCGTCTNQVAEGISGCLKPRGSHGGDQVLQNSTWPAMPTQAVRLHIKDHHVVLDNGILQVTLSKPGGIVTGIRYNGIDNLLEFRNKETNRGYWDLMWNPPGGKGMFDVISGTSFRVVVENEEQVELSFLRTWASSHEGNYIPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPAFTLGQTRFTFKLRKEKFRYMVIADNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRLEGPPVS
cHHHHHHHHccccccccccEEEEEEEEEEEEEccccccccccccccccccccccccEEEEEEcEEEEEEccEEEEEEEccccEEEEEEEccEEEEcccccccccccEEEEEEcccccccEEEEEcccEEEEEEEcccEEEEEEEEEEEcccccccEEccEEEEEEEEccccEEEEEEEEEccccccccccccEEEEEEEcccccccEEEEcccccccccccccccccccccccccEEEEEcccccccccEEEEEEEEccccccccEEEEEEccccEEEEEEccccccccccccEEcccccccccEEEEEEEccccccEEEEcccccccccEEEccEEEEEEcccccccccccHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEccccccccccEEEEcccccccccccccccccEEEEEEcccccEEEccEEcEEEEEEEEEccEEEEEEEEEEEEEEEccEEEEccEEEEccccccccEEEccccccccccccccccccccccEEcccccccccccccccccccccccccEEEEcccccccccEEEEEEEEccccccccEEEEEEEEEccccccccEEEEEEEEcccccccEEEEcccccccccccccccccccEEEEEEEEEEEEEEEEEEEcccEEEEccEEEEEEEccccccccEEEEEEEEEccccc
cHHHHHHHHHHHccccccccccHHHHHHccccccccccccccccccccccccccccEEEEEcccEEEEEccEEEEEEEccccEEEEEEEccccccccccccccccccEEEEEccccccccEccccccEEEEEEEcccEEEEEEEEcccccccccccccccEEEEEEEcccccEEEEEEEccccccccccccHEEEEEEcccccccEEEEccccccccccccccccccccEEEcccEEEEcccccccccccEcccEEEccccccccEEEEEEccccEEEEEEEcccccccccccHHHcHcccccEEEHHEEcccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEcccccccccccEEEEEEccccccEEEEEcccEEEEEEEccccEEEEccccccEEEEEEEEcccEEEEEEccEEEEEcccEEEcccEEEEccccccEEEEEEcccccccccccccccccccccccccccHHHHHcccHHHHHHHcccccEEEEEccccccccccEEEEEEEccccccccccEEEEEEccccccccccEEEEEEHHHHcccccEEEEcccccccccccccccccccEEEccEEccEEEEEEEEcHHHHEccccEEEEEEccccccccEEEEEEEEEcccccc
MKKRLQRIADFlgscdcgtctnqvaegisgclkprgshggdqvlqnstwpamptqAVRLHIKDHHVVLDNGILqvtlskpggivtgiryNGIDNLLEFRNKEtnrgywdlmwnppggkgmfDVISGTSFRVVVENEEQVELSFLRTWasshegnyiplnIDKRFIMlrgssgfySYAIYEHLkewpaftlgqtrFTFKLRKEKFRYMVIAdnrhrqmplpedlstgrgqplaypeavqlvnptdpehqgevddkyqyscenkdlkvhgwicrttpvgfwliipsdefrsggplkqnltshvgptTLAVFLSGHYagkymethigqdepwkkvfGPVFIYlnsaadgddplwLWEDAKIKMMSEvqswpynfpasedfqkseergcvsgrllvqdsndvisangayvglappgdvgswqteckdyqfwttadedgcfsiknirtgnynlyawvpgfvgdyrsDALVTItsgsnikmgdlvyepprdgptlweigipdrsarefnvpdpdpkyvnrlfvnhpdrfrqyglwsrytelypnedlvyTIGVSDYSKDWFFAQVVREMdnktyqgtTWQIKFKLdhvdrnssYKLRVAIASATLAELQVrvndpnanrplfttgligrdnaiaRHGIHGLYLLYhvnipgtrfiegentiflkqprctspfqgimydyirlegppvs
MKKRLQRIADFlgscdcgtcTNQVAEGISGCLKPRGSHGGDQVLQNSTWPAMPTQAVRLHIKDHHVVLDNGILqvtlskpggivTGIRYNGIDNLLEFRNKETNRGYWDLMWNPPGGKGMFDVISGTSFRVVVENEEQVELSFLrtwasshegnyiPLNIDKRFIMLRGSSGFYSYAIYEHLkewpaftlgqtrfTFKLRKEKFRYMVIadnrhrqmplpeDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITsgsnikmgdlvyEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAElqvrvndpnanrPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIrlegppvs
MKKRLQRIADFLGSCDCGTCTNQVAEGISGCLKPRGSHGGDQVLQNSTWPAMPTQAVRLHIKDHHVVLDNGILQVTLSKPGGIVTGIRYNGIDNLLEFRNKETNRGYWDLMWNPPGGKGMFDVISGTSFRVVVENEEQVELSFLRTWASSHEGNYIPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPAFTLGQTRFTFKLRKEKFRYMVIADNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRLEGPPVS
******RIADFLGSCDCGTCTNQVAEGISGCLKPRG**GGDQVLQNSTWPAMPTQAVRLHIKDHHVVLDNGILQVTLSKPGGIVTGIRYNGIDNLLEFRNKETNRGYWDLMWNPPGGKGMFDVISGTSFRVVVENEEQVELSFLRTWASSHEGNYIPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPAFTLGQTRFTFKLRKEKFRYMVIAD******************************************KYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPA**********GCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVP*PDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRL******
************GSCDCGTCTNQVAEGISGCLKPRGSHGGDQVLQNSTWPAMPTQAVRLHIKDHHVVLDNGILQVTLSKPGGIVTGIRYNGIDNLLEFRNKETNRGYWDLMWNPPGGKGMFDVISGTSFRVVVENEEQVELSFLRTWASSHEGNYIPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPAFTLGQTRFTFKLRKEKFRYMVIADNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRLEGP***
MKKRLQRIADFLGSCDCGTCTNQVAEGISGCLKPRGSHGGDQVLQNSTWPAMPTQAVRLHIKDHHVVLDNGILQVTLSKPGGIVTGIRYNGIDNLLEFRNKETNRGYWDLMWNPPGGKGMFDVISGTSFRVVVENEEQVELSFLRTWASSHEGNYIPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPAFTLGQTRFTFKLRKEKFRYMVIADNRHRQMPLP********QPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRLEGPPVS
MKKRLQRIADFLGSCDCGTCTNQVAEGISGCLK******************MPTQAVRLHIKDHHVVLDNGILQVTLSKPGGIVTGIRYNGIDNLLEFRNKETNRGYWDLMWNPPGGKGMFDVISGTSFRVVVENEEQVELSFLRTWASSHEGNYIPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPAFTLGQTRFTFKLRKEKFRYMVIADNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRLEGPP**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
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MKKRLQRIADFLGSCDCGTCTNQVAEGISGCLKPRGSHGGDQVLQNSTWPAMPTQAVRLHIKDHHVVLDNGILQVTLSKPGGIVTGIRYNGIDNLLEFRNKETNRGYWDLMWNPPGGKGMFDVISGTSFRVVVENEEQVELSFLRTWASSHEGNYIPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPAFTLGQTRFTFKLRKEKFRYMVIADNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRLEGPPVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query682 2.2.26 [Sep-21-2011]
Q8RJP2578 Rhamnogalacturonate lyase yes no 0.796 0.939 0.25 3e-31
Q5AZ85660 Rhamnogalacturonate lyase yes no 0.834 0.862 0.239 1e-19
Q0C7K7660 Probable rhamnogalacturon N/A no 0.854 0.883 0.222 2e-17
B8N5T6663 Probable rhamnogalacturon N/A no 0.706 0.726 0.224 1e-16
Q4WR79658 Probable rhamnogalacturon no no 0.848 0.879 0.219 1e-13
B0XPA2658 Probable rhamnogalacturon N/A no 0.848 0.879 0.219 1e-13
A1D144658 Probable rhamnogalacturon N/A no 0.854 0.886 0.210 2e-13
A5ABH4706 Probable rhamnogalacturon yes no 0.683 0.660 0.225 1e-12
Q2U5P7695 Probable rhamnogalacturon no no 0.722 0.709 0.227 1e-11
Q5B5P1 1041 Probable rhamnogalacturon no no 0.567 0.371 0.237 2e-10
>sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1 Back     alignment and function desciption
 Score =  137 bits (344), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 161/644 (25%), Positives = 248/644 (38%), Gaps = 101/644 (15%)

Query: 50  PAMPTQAVRLHIKDHHVVLDNGILQVTLSKPGGIVTGIRYNGIDNLLE-----FRNKETN 104
           P   T AV+L +   +  LDNG+L+V     G       + G  NL+       R+ + N
Sbjct: 22  PLTATGAVKLTLDGMNSTLDNGLLKVRFGADGSAKE--VWKGGTNLISRLSGAARDPDKN 79

Query: 105 RGYWDLMWNPPGGKGMFDVISGTSFRVVVENEEQVELSFLRTWASSHEGNYIPLNIDKRF 164
           R ++   ++  GG   F         V+ +  +QV L+++        G    L ++   
Sbjct: 80  RSFYLDYYS--GGVNEF---VPERLEVIKQTPDQVHLAYI----DDQNGK---LRLEYHL 127

Query: 165 IMLRGSSGFYSYAIYEHLKEWPAFTLGQTRFTFKLRKEKFRYMVIADNRHRQMPLPEDLS 224
           IM R  SG YSY +  +    P  T+ + R  ++    +   +                S
Sbjct: 128 IMTRDVSGLYSYVVAANTGSAPV-TVSELRNVYRFDATRLDTLFN--------------S 172

Query: 225 TGRGQPLAYPEAVQLVNPTDPEHQ---GEVDDKYQYSCENKDLKVHGWICRTTPVGFWLI 281
             RG PL Y E  QL    D   +   G V  KY ++   ++ +   W       G W++
Sbjct: 173 IRRGTPLLYDELEQLPKVQDETWRLPDGSVYSKYDFAGYQRESRY--WGVMGNGYGAWMV 230

Query: 282 IPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLN 341
             S E+ SG  LKQ L  H     L      H+    M    G    ++K++GP  +Y+N
Sbjct: 231 PASGEYYSGDALKQELLVHQDAIILNYLTGSHFGTPDMVAQPG----FEKLYGPWLLYIN 286

Query: 342 SAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISA 401
              D +    L  D   +   E  SWPY +   +D +   +R  VSGRL  +  +  +  
Sbjct: 287 QGNDRE----LVADVSRRAEHERASWPYRW--LDDARYPRQRATVSGRLRTEAPHATVVL 340

Query: 402 NGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRS 461
           N +           ++  +   Y F    + DG FS+ N+  G Y L A+  G       
Sbjct: 341 NSS---------AENFDIQTTGYLFSARTNRDGRFSLSNVPPGEYRLSAYADGGTQIGLL 391

Query: 462 DALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPD 521
                   G   ++G +    P   P  W IG  DR A EF             F + P 
Sbjct: 392 AQQTVRVEGKKTRLGQIDARQP--APLAWAIGQADRRADEFR------------FGDKPR 437

Query: 522 RFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDH 581
           ++R    W   TE+    DL + IG S   KDW++AQ          Q  +W I F    
Sbjct: 438 QYR----WQ--TEV--PADLTFEIGKSRERKDWYYAQT---------QPGSWHILFNTRT 480

Query: 582 VDRNSSYKLRVAIASATLAELQVRVNDPN----ANRPLFTTGLIGRDNAIARHGIH-GLY 636
            ++   Y L +AIA+A+   +    + P      N  L TT     D +I R  +  G Y
Sbjct: 481 PEQ--PYTLNIAIAAASNNGMTTPASSPQLAVKLNGQLLTTLKYDNDKSIYRGAMQSGRY 538

Query: 637 LLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRLEGPP 680
              H+ +P     +G N I L+          +MYD I L   P
Sbjct: 539 HEAHIPLPAGALQQGGNRITLELLGGM-----VMYDAITLTETP 577
Degrades the rhamnogalacturonan I (RG-I) backbone of pectin. Is required for the full virulence of E.chrysanthemi strain 3937 as it is involved in rotting of plant tissue.
Dickeya dadantii (strain 3937) (taxid: 198628)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: -
>sp|Q5AZ85|RGLB_EMENI Rhamnogalacturonate lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglB PE=2 SV=2 Back     alignment and function description
>sp|Q0C7K7|RGLB_ASPTN Probable rhamnogalacturonate lyase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|B8N5T6|RGLB_ASPFN Probable rhamnogalacturonate lyase B OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q4WR79|RGLB_ASPFU Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|B0XPA2|RGLB_ASPFC Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|A1D144|RGLB_NEOFI Probable rhamnogalacturonate lyase B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|A5ABH4|RGLB_ASPNC Probable rhamnogalacturonate lyase B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q2U5P7|RGLC_ASPOR Probable rhamnogalacturonate lyase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=rglC PE=3 SV=1 Back     alignment and function description
>sp|Q5B5P1|RGLC_EMENI Probable rhamnogalacturonate lyase C OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query682
224081899629 predicted protein [Populus trichocarpa] 0.898 0.974 0.795 0.0
255572840633 lyase, putative [Ricinus communis] gi|22 0.920 0.992 0.751 0.0
359492972643 PREDICTED: probable rhamnogalacturonate 0.922 0.978 0.745 0.0
356515683636 PREDICTED: rhamnogalacturonate lyase-lik 0.922 0.988 0.731 0.0
449436940633 PREDICTED: probable rhamnogalacturonate 0.922 0.993 0.725 0.0
356515685643 PREDICTED: probable rhamnogalacturonate 0.925 0.981 0.718 0.0
302142095656 unnamed protein product [Vitis vinifera] 0.922 0.958 0.728 0.0
30681433675 rhamnogalacturonate lyase-like protein [ 0.973 0.983 0.684 0.0
255572842642 lyase, putative [Ricinus communis] gi|22 0.923 0.981 0.725 0.0
297849306675 hypothetical protein ARALYDRAFT_888241 [ 0.966 0.976 0.698 0.0
>gi|224081899|ref|XP_002306520.1| predicted protein [Populus trichocarpa] gi|222855969|gb|EEE93516.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1020 bits (2638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/616 (79%), Positives = 538/616 (87%), Gaps = 3/616 (0%)

Query: 68  LDNGILQVTLSKPGGIVTGIRYNGIDNLLEFRNKETNRGYWDLMWNPPGGKGMFDVISGT 127
           +DNGI+QVTLSKP GIVTGIRY+GIDNLLE  N+ETNRGYWDL WNPPGG G+FDVISGT
Sbjct: 1   MDNGIVQVTLSKPAGIVTGIRYDGIDNLLEVLNRETNRGYWDLHWNPPGGNGIFDVISGT 60

Query: 128 SFRVVVENEEQVELSFLRTWASSHEGNYIPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPA 187
           SFRVVVEN+EQVELSF R W SS EG YIPLNIDKRFI+LRGSSGFYSYAIYEHL+EWP 
Sbjct: 61  SFRVVVENDEQVELSFTRMWDSSLEGKYIPLNIDKRFILLRGSSGFYSYAIYEHLQEWPG 120

Query: 188 FTLGQTRFTFKLRKEKFRYMVIADNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEH 247
           F +G+TR TFKLRK+KF+YM IADNR R MPLP+D   GR Q LAYPEAV LVNP  PE 
Sbjct: 121 FDIGETRITFKLRKDKFQYMAIADNRQRLMPLPDDRLPGRCQALAYPEAVILVNPKLPEL 180

Query: 248 QGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLA 307
            GEVDDKYQYSCENKD +VHGWIC   PVGFW I PSDEFR+ GPLKQNLTSHVGPTTLA
Sbjct: 181 TGEVDDKYQYSCENKDNQVHGWICFKPPVGFWQITPSDEFRTAGPLKQNLTSHVGPTTLA 240

Query: 308 VFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSW 367
           +F S HYAGK +   I   EPWKKVFGPVFIYLNSA++G+DPL+LWEDAK++MM+EVQSW
Sbjct: 241 MFHSSHYAGKDLVLSISPGEPWKKVFGPVFIYLNSASNGEDPLFLWEDAKMQMMAEVQSW 300

Query: 368 PYNFPASEDFQKSEERGCVSGRLLVQD---SNDVISANGAYVGLAPPGDVGSWQTECKDY 424
           PY+FPASEDFQKSE+RG V GRLLV+D   S+D I A+GAYVGLAPPGDVGSWQTECKDY
Sbjct: 301 PYSFPASEDFQKSEQRGNVCGRLLVKDRNISDDYILASGAYVGLAPPGDVGSWQTECKDY 360

Query: 425 QFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPR 484
           QFWT ADE+G FSIKNIRTG+YNLYAWVPGF+GDYR DA+V I SG ++ MGDLVYEPPR
Sbjct: 361 QFWTRADENGYFSIKNIRTGDYNLYAWVPGFLGDYRWDAIVNIISGCDMDMGDLVYEPPR 420

Query: 485 DGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYT 544
           DGPTLWEIGIPDRSA EF +P PDPK++N L+ NHPDRFRQYGLW RY +LYP+ DLVYT
Sbjct: 421 DGPTLWEIGIPDRSAAEFYIPGPDPKFMNNLYANHPDRFRQYGLWGRYADLYPDTDLVYT 480

Query: 545 IGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQV 604
           +G+SDY KDWFFAQVVR  D+ T  GTTWQIKFKLD VDRNSSYKLRVAIASATLAELQV
Sbjct: 481 VGLSDYRKDWFFAQVVRRKDDDTQVGTTWQIKFKLDKVDRNSSYKLRVAIASATLAELQV 540

Query: 605 RVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTS 664
           RVND  A RPLFT+GLIGRDNAIARHGIHGLY LY+VNIPG R +EGENTIFL QPRCTS
Sbjct: 541 RVNDAKAQRPLFTSGLIGRDNAIARHGIHGLYRLYNVNIPGARLVEGENTIFLTQPRCTS 600

Query: 665 PFQGIMYDYIRLEGPP 680
           PFQG+MYDYIRLEGPP
Sbjct: 601 PFQGLMYDYIRLEGPP 616

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255572840|ref|XP_002527352.1| lyase, putative [Ricinus communis] gi|223533271|gb|EEF35024.1| lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359492972|ref|XP_002285626.2| PREDICTED: probable rhamnogalacturonate lyase B-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356515683|ref|XP_003526528.1| PREDICTED: rhamnogalacturonate lyase-like [Glycine max] Back     alignment and taxonomy information
>gi|449436940|ref|XP_004136250.1| PREDICTED: probable rhamnogalacturonate lyase B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356515685|ref|XP_003526529.1| PREDICTED: probable rhamnogalacturonate lyase B-like [Glycine max] Back     alignment and taxonomy information
>gi|302142095|emb|CBI19298.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|30681433|ref|NP_172462.2| rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] gi|332190392|gb|AEE28513.1| rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255572842|ref|XP_002527353.1| lyase, putative [Ricinus communis] gi|223533272|gb|EEF35025.1| lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297849306|ref|XP_002892534.1| hypothetical protein ARALYDRAFT_888241 [Arabidopsis lyrata subsp. lyrata] gi|297338376|gb|EFH68793.1| hypothetical protein ARALYDRAFT_888241 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query682
TAIR|locus:2024331675 AT1G09910 [Arabidopsis thalian 0.944 0.954 0.709 9.6e-263
TAIR|locus:2024427617 AT1G09890 [Arabidopsis thalian 0.895 0.990 0.683 4.9e-243
TAIR|locus:2136007646 AT4G24430 [Arabidopsis thalian 0.917 0.969 0.635 1.8e-229
TAIR|locus:2024417631 AT1G09880 [Arabidopsis thalian 0.895 0.968 0.608 4.3e-212
TAIR|locus:2066040677 AT2G22620 [Arabidopsis thalian 0.922 0.929 0.561 2.3e-197
TAIR|locus:2121095667 AT4G38030 [Arabidopsis thalian 0.907 0.928 0.547 1.2e-193
TAIR|locus:2121090678 AT4G37950 [Arabidopsis thalian 0.895 0.901 0.549 4.5e-185
TAIR|locus:2200390248 AT1G65210 "AT1G65210" [Arabido 0.269 0.741 0.589 7.7e-68
ASPGD|ASPL0000007043660 rglB [Emericella nidulans (tax 0.818 0.845 0.245 2.5e-22
UNIPROTKB|Q5AZ85660 rglB "Rhamnogalacturonate lyas 0.818 0.845 0.245 2.5e-22
TAIR|locus:2024331 AT1G09910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2528 (895.0 bits), Expect = 9.6e-263, P = 9.6e-263
 Identities = 460/648 (70%), Positives = 526/648 (81%)

Query:    36 GSHGGDQVLQNSTWPAMPTQAVRLHIKDHHVVLDNGILQVTLSKPGGIVTGIRYNGIDNL 95
             G+  G   L +     M +  V LH+ D +VV+DNGILQVTLSKPGGI+TGI YNGIDN+
Sbjct:    28 GTDQGTSGLSHRKDHRMSSHGVHLHVHDRYVVMDNGILQVTLSKPGGIITGIEYNGIDNV 87

Query:    96 LEFRNKETNRGYWDLMWNPPGGKGMFDVISGTSFRVVVENEEQVELSFLRTWASSHEGNY 155
             LE RNKETNRGYWDL WN PGGKG+FDVISG +FRV+VE EEQVE+SFLRTW  S EG Y
Sbjct:    88 LEVRNKETNRGYWDLHWNEPGGKGIFDVISGVTFRVIVETEEQVEISFLRTWDPSLEGKY 147

Query:   156 IPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPAFTLGQTRFTFKLRKEKFRYMVIADNRHR 215
             IPLNIDKRFIMLRGSSG YSY IYEHLK+WP F LG+TR  FKLRK+KF YM +AD+R R
Sbjct:   148 IPLNIDKRFIMLRGSSGVYSYGIYEHLKDWPGFELGETRIAFKLRKDKFHYMAVADDRKR 207

Query:   216 QMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTP 275
              MP P+DL  GR Q L Y EA  L  P DP  QGEVDDKYQYSCENKDL+VHGWI    P
Sbjct:   208 IMPFPDDLCKGRCQTLDYQEASLLTAPCDPRLQGEVDDKYQYSCENKDLRVHGWISFDPP 267

Query:   276 VGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGP 335
             VGFW I PS+EFRSGGPLKQNLTSHVGPTTLAVF S HYAGK M       EPWKKV+GP
Sbjct:   268 VGFWQITPSNEFRSGGPLKQNLTSHVGPTTLAVFHSTHYAGKTMMPRFEHGEPWKKVYGP 327

Query:   336 VFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQD- 394
             VFIYLNS A+GDDPL LW+DAKIKMM+EV+ WPY+F AS+D+ KSEERG   GRLL++D 
Sbjct:   328 VFIYLNSTANGDDPLCLWDDAKIKMMAEVERWPYSFVASDDYPKSEERGTARGRLLIRDR 387

Query:   395 --SNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWV 452
               +ND+ISA GAYVGLAPPGD GSWQ ECK YQFW  ADE G FSI N+R G YNLYAWV
Sbjct:   388 FINNDLISARGAYVGLAPPGDSGSWQIECKGYQFWAIADEAGYFSIGNVRPGEYNLYAWV 447

Query:   453 PGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYV 512
             P F+GDY +  +V +TSG  I+MGD+VYEPPRDGPTLWEIGIPDR A EF +PDPDP  V
Sbjct:   448 PSFIGDYHNGTIVRVTSGCMIEMGDIVYEPPRDGPTLWEIGIPDRKASEFFIPDPDPTLV 507

Query:   513 NRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTT 572
             NR+ V+H DRFRQYGLW +YT++YPN+DLVYT+GVSDY +DWFFA V R+  +  ++GTT
Sbjct:   508 NRVLVHHQDRFRQYGLWKKYTDMYPNDDLVYTVGVSDYRRDWFFAHVPRKKGD-VHEGTT 566

Query:   573 WQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGI 632
             WQI F L+++D+ ++YKLRVAIASATLAELQ+R+ND  A RPLFTTGLIGRDN+IARHGI
Sbjct:   567 WQIIFNLENIDQKANYKLRVAIASATLAELQIRINDAEAIRPLFTTGLIGRDNSIARHGI 626

Query:   633 HGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRLEGPP 680
             HG+Y+LY VNIPG R ++G+NTIFLKQPRC  PFQGIMYDYIRLEGPP
Sbjct:   627 HGVYMLYAVNIPGNRLVQGDNTIFLKQPRCNGPFQGIMYDYIRLEGPP 674
GO:0003824 "catalytic activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0016829 "lyase activity" evidence=ISS
GO:0030246 "carbohydrate binding" evidence=IEA
TAIR|locus:2024427 AT1G09890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136007 AT4G24430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024417 AT1G09880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066040 AT2G22620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121095 AT4G38030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121090 AT4G37950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200390 AT1G65210 "AT1G65210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007043 rglB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AZ85 rglB "Rhamnogalacturonate lyase B" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_V4496
hypothetical protein (629 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query682
pfam06045220 pfam06045, Rhamnogal_lyase, Rhamnogalacturonate ly 1e-102
cd10320265 cd10320, RGL4_N, N-terminal catalytic domain of rh 2e-78
cd10317161 cd10317, RGL4_C, C-terminal domain of rhamnogalact 6e-54
cd1031692 cd10316, RGL4_M, Middle domain of rhamnogalacturon 6e-35
pfam1362081 pfam13620, CarboxypepD_reg, Carboxypeptidase regul 5e-04
>gnl|CDD|218870 pfam06045, Rhamnogal_lyase, Rhamnogalacturonate lyase family Back     alignment and domain information 
 Score =  312 bits (800), Expect = e-102
 Identities = 130/207 (62%), Positives = 156/207 (75%), Gaps = 1/207 (0%)

Query: 45  QNSTWPAMPTQAVRLHIKDHHVVLDNGILQVTLSKPGGIVTGIRYNGIDNLLEFRNKETN 104
            +   P +   +V LH+ D HVV+DNGI+QVTLS PGG +TGIRYNGIDNLLE R+KE N
Sbjct: 15  VSLAVPGLNGGSVSLHVDDRHVVVDNGIVQVTLSNPGGAITGIRYNGIDNLLEARDKEKN 74

Query: 105 RGYWDLMWNPPGGKGMFDVISGTSFRVVVENEEQVELSFLRTWASSHEGNYIPLNIDKRF 164
           RGYWD++WN PG K +FDVI GT F V+ ++EEQVELSF+RTW  S   N +PLNIDKR 
Sbjct: 75  RGYWDVVWNFPGVKSIFDVIVGTEFEVITQDEEQVELSFIRTWDPS-RDNGVPLNIDKRL 133

Query: 165 IMLRGSSGFYSYAIYEHLKEWPAFTLGQTRFTFKLRKEKFRYMVIADNRHRQMPLPEDLS 224
           IMLRG SGFYSYAI+EHL  WPA  L +TR  FKL K+KF YM I+D+R R MP P+D  
Sbjct: 134 IMLRGVSGFYSYAIFEHLSGWPAVNLSETRLVFKLNKDKFHYMAISDDRQRIMPRPDDRD 193

Query: 225 TGRGQPLAYPEAVQLVNPTDPEHQGEV 251
             RG PLAYPEAV LV+P +P+ +GEV
Sbjct: 194 IPRGAPLAYPEAVLLVDPQEPQFRGEV 220

Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. Length = 220
>gnl|CDD|199907 cd10320, RGL4_N, N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information
>gnl|CDD|199905 cd10317, RGL4_C, C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information
>gnl|CDD|199904 cd10316, RGL4_M, Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information
>gnl|CDD|222268 pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 682
PF06045203 Rhamnogal_lyase: Rhamnogalacturonate lyase family; 100.0
PF09284249 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPr 100.0
PF14683167 CBM-like: Polysaccharide lyase family 4, domain II 100.0
PF1468695 fn3_3: Polysaccharide lyase family 4, domain II; P 99.86
PF1362082 CarboxypepD_reg: Carboxypeptidase regulatory-like 98.73
PF1371588 DUF4480: Domain of unknown function (DUF4480) 98.4
cd03863375 M14_CPD_II The second carboxypeptidase (CP)-like d 97.94
cd03864392 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, als 97.87
cd03865402 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (C 97.86
cd06245363 M14_CPD_III The third carboxypeptidase (CP)-like d 97.67
cd03868372 M14_CPD_I The first carboxypeptidase (CP)-like dom 97.51
cd03858374 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub 97.49
cd03867395 M14_CPZ Peptidase M14-like domain of carboxypeptid 97.15
cd03866376 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM 96.4
PRK15036137 hydroxyisourate hydrolase; Provisional 95.47
PF08400134 phage_tail_N: Prophage tail fibre N-terminal; Inte 95.42
PF0830871 PEGA: PEGA domain; InterPro: IPR013229 This domain 94.82
PF03422125 CBM_6: Carbohydrate binding module (family 6); Int 93.53
cd00421146 intradiol_dioxygenase Intradiol dioxygenases catal 93.53
cd03869405 M14_CPX_like Peptidase M14-like domain of carboxyp 93.5
KOG1948 1165 consensus Metalloproteinase-related collagenase pM 92.42
PF09430123 DUF2012: Protein of unknown function (DUF2012); In 92.4
PF0573870 Cna_B: Cna protein B-type domain; InterPro: IPR008 91.97
COG3485226 PcaH Protocatechuate 3,4-dioxygenase beta subunit 91.03
PF0721085 DUF1416: Protein of unknown function (DUF1416); In 89.97
cd03463185 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4 89.47
cd03459158 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) 88.59
cd03462247 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) 88.51
TIGR02465246 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Memb 88.19
PF0749566 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi 87.98
KOG1948 1165 consensus Metalloproteinase-related collagenase pM 86.39
cd03464220 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4- 85.9
PF00775183 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 Th 85.7
PF03170 605 BcsB: Bacterial cellulose synthase subunit; InterP 85.6
cd03458256 Catechol_intradiol_dioxygenases Catechol intradiol 85.21
TIGR02423193 protocat_alph protocatechuate 3,4-dioxygenase, alp 84.78
TIGR02962112 hdxy_isourate hydroxyisourate hydrolase. Members o 83.2
TIGR02438281 catachol_actin catechol 1,2-dioxygenase, Actinobac 83.14
TIGR02422220 protocat_beta protocatechuate 3,4-dioxygenase, bet 82.81
PRK103401021 ebgA cryptic beta-D-galactosidase subunit alpha; R 81.0
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin [] Back     alignment and domain information 
Probab=100.00  E-value=3.8e-59  Score=461.67  Aligned_cols=201  Identities=67%  Similarity=1.154  Sum_probs=196.8

Q ss_pred             ccccccEEEEEeCcEEEEECCeEEEEEeCCCeeEEEEEEcCeecccccccCCCcceeeEEEeCCCCCCCceeeeccceEE
Q 005706           51 AMPTQAVRLHIKDHHVVLDNGILQVTLSKPGGIVTGIRYNGIDNLLEFRNKETNRGYWDLMWNPPGGKGMFDVISGTSFR  130 (682)
Q Consensus        51 ~~~~a~~~~~~~g~~~vidNg~l~vtv~k~~G~itsi~y~G~enll~~~~~~~~~gY~D~~w~~~g~~g~~~~~~gt~~~  130 (682)
                      +++.++|+|++++.+|+||||+|+|||+||+|+||+|+|+|++|||+..+++.++||||++|+.+|..++|+++.||+|+
T Consensus         3 ~~~~~~V~L~~~~~~VvldNGiVqVtls~p~G~VtgIkYnGi~NLle~~n~e~nrGYwD~~W~~~G~~~~~~~~~gt~f~   82 (203)
T PF06045_consen    3 ASSSSGVTLTVQGRQVVLDNGIVQVTLSKPGGIVTGIKYNGIDNLLEVANKENNRGYWDLVWNEPGSKGKFDRIKGTEFS   82 (203)
T ss_pred             cccCCCeEEEEcCCEEEEECCEEEEEEcCCCceEEEEEECCEehhhcccCcccCCceEEEecccCCccccccccCCcEEE
Confidence            45678899999999999999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             EEEecCCEEEEEEEEeecCCCCCCcccceeeEEEEEecCCceeEEEEEeeccccCCCCCccceEEEEEeCccCccceeee
Q 005706          131 VVVENEEQVELSFLRTWASSHEGNYIPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPAFTLGQTRFTFKLRKEKFRYMVIA  210 (682)
Q Consensus       131 vi~~~~~~i~Vs~~~~~~~s~~g~~~~l~l~~~~v~r~G~sgiY~y~~~~~~~~~p~~~lgE~R~v~Rl~~~~f~~~~~~  210 (682)
                      ||++++++|||||+++|+||++++.+||+||+||||++|+||||+|+|++|+++||+++|+|+|+||||++++|+||+++
T Consensus        83 Vi~~te~qVevSF~r~w~~s~~~~~~plnIDkryVm~rG~SGfY~YAI~e~~~~~Pa~~l~q~R~vfKl~~d~F~ymai~  162 (203)
T PF06045_consen   83 VIEQTEEQVEVSFSRTWDPSLDGKSVPLNIDKRYVMLRGSSGFYSYAIFEHPAGWPAFDLGQTRIVFKLNKDKFHYMAIS  162 (203)
T ss_pred             EEEcCCCeEEEEEEcccCcCCCCCcceeEeeEEEEEecCCceEEEEEEEecCCCCCCcccceeEEEEECCccccceEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCcCCCCCCCccccccceeeecCCCCCCCCcee
Q 005706          211 DNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEV  251 (682)
Q Consensus       211 d~r~~~mP~~~d~~~~~~~~l~~~da~~l~~~~~~~~~G~~  251 (682)
                      |+|||.||+|+|+++++|++|+||||++|+||+||+|+|||
T Consensus       163 d~rqr~mP~~~D~~~~~~~~l~y~eav~l~~p~~~~~~gev  203 (203)
T PF06045_consen  163 DDRQRIMPSPDDRDPARGQPLAYPEAVLLVNPINPQFRGEV  203 (203)
T ss_pred             ccccccCCChHHccccCCCcccCchhhhcCCCCCccccccC
Confidence            99999999999999999999999999999999999999986

This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
>PF09284 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPro: IPR015364 This domain is found in prokaryotic enzyme rhamnogalacturonase B, it adopts a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets Back     alignment and domain information
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A Back     alignment and domain information
>PF13715 DUF4480: Domain of unknown function (DUF4480) Back     alignment and domain information
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3 Back     alignment and domain information
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3 Back     alignment and domain information
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PRK15036 hydroxyisourate hydrolase; Provisional Back     alignment and domain information
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein Back     alignment and domain information
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins Back     alignment and domain information
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity Back     alignment and domain information
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates Back     alignment and domain information
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators Back     alignment and domain information
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains Back     alignment and domain information
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length Back     alignment and domain information
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit Back     alignment and domain information
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate Back     alignment and domain information
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups Back     alignment and domain information
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase Back     alignment and domain information
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators Back     alignment and domain information
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit Back     alignment and domain information
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases Back     alignment and domain information
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity [] Back     alignment and domain information
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols Back     alignment and domain information
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit Back     alignment and domain information
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase Back     alignment and domain information
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial Back     alignment and domain information
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit Back     alignment and domain information
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query682
1nkg_A508 Rhamnogalacturonase B; polysaccharide lyase, carbo 1e-132
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A Length = 508 Back     alignment and structure
 Score =  398 bits (1025), Expect = e-132
 Identities = 94/623 (15%), Positives = 184/623 (29%), Gaps = 131/623 (21%)

Query: 63  DHHVVLDNGI---LQVTLSKPGGIVTGIRYNGIDNLLEFRNKETNRGYWDLMWNPPGGKG 119
               V+D      L+ T+S+    +T I + G +     +      G             
Sbjct: 8   SSAYVIDTNAPNQLKFTVSRSSCDITSIIHYGTELQYSSQGSHIGSGL------------ 55

Query: 120 MFDVISGTSFRVVVENEEQVELSFLRTWASSHEGNYIPLNIDKRFIMLRGSSGFYSYAIY 179
                 G++     ++ + ++++             +   + +  ++  G    +     
Sbjct: 56  ------GSATVTATQSGDYIKVTC------------VTDTLTQYMVVHNGDPIIHMATYI 97

Query: 180 EHLKEWPAFTLGQTRFTFKLRKEKFRYMVIADNRHRQMPLPEDLSTGRGQPLAYPEAVQL 239
                    ++G+ RF  +L  +         N      +            A   A++ 
Sbjct: 98  TAE-----PSIGELRFIARLNSDLL------PNEEPFGDVS---------TTADGTAIEG 137

Query: 240 VNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTS 299
            +        E   K+  S    D + H            +I+   E  SGGP  +++ S
Sbjct: 138 SDVFLVG--SETRSKFYSSERFIDDQRHCIA--GDAHRVCMILNQYESSSGGPFHRDINS 193

Query: 300 HVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIK 359
           + G +  A++   +        H+  +     + GP  +Y +       P    + +   
Sbjct: 194 NNGGSYNALYWYMNSG------HVQTESYRMGLHGPYSMYFS---RSGTPSTSIDTSF-- 242

Query: 360 MMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQT 419
                    +     + +  +  RG V+G                    A          
Sbjct: 243 ---------FADLDIKGYVAASGRGKVAGT----------------ASGADSSMDWVVHW 277

Query: 420 ECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLV 479
                Q+WT     G F+   ++ G Y +  +   +     S   VT+++GS       +
Sbjct: 278 YNDAAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYAVATSS---VTVSAGSTTTKN--I 332

Query: 480 YEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNE 539
               + G T+++IG  D     F       +        HP   R          +    
Sbjct: 333 SGSVKTGTTIFKIGEWDGQPTGF-------RNAANQLRMHPSDSR----------MSSWG 375

Query: 540 DLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASA-T 598
            L YT+G S  + D+  A                 IKF         +  LR+    +  
Sbjct: 376 PLTYTVGSSALT-DFPMAVF-------KSVNNPVTIKFTATSAQ-TGAATLRIGTTLSFA 426

Query: 599 LAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLK 658
               Q  +N    + P   T L      + R    GL  +Y V+IP    + G NTI + 
Sbjct: 427 GGRPQATINSYTGSAPAAPTNLD--SRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITIN 484

Query: 659 QPRCTSPF----QGIMYDYIRLE 677
               +S         ++D + L 
Sbjct: 485 VISGSSGDTYLSPNFIFDCVELF 507
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query682
1nkg_A508 Rhamnogalacturonase B; polysaccharide lyase, carbo 100.0
2nsm_A439 Carboxypeptidase N catalytic chain; caroxypeptidas 97.86
1h8l_A380 Carboxypeptidase GP180 residues 503-882; hydrolase 97.76
3mn8_A435 LP15968P; catalytic domain of alpha/beta-hydrolase 97.68
1uwy_A426 Carboxypeptidase M; metallopeptidase, GPI-anchor, 97.64
1xpn_A170 Hypothetical protein PA1324; B-barrel, structural 96.74
3qec_A150 Putative carbohydrate binding protein; suramin bin 96.26
4aw7_A591 GH86A beta-porphyranase; hydrolase, porphyran-hexa 96.13
2w87_A139 Esterase D, XYL-CBM35; plant cell WALL degradation 95.82
2wz8_A156 Cellulosome protein dockerin type I; sugar binding 95.39
2w3j_A145 Carbohydrate binding module; sugar-binding protein 94.92
2w47_A144 Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1. 94.68
2bgo_A140 Endo-B1,4-mannanase 5C; carbohydrate binding prote 94.23
2vzp_A127 Aocbm35, EXO-beta-D-glucosaminidase; family 35, CS 93.29
3kcp_A321 Cellulosomal-scaffolding protein A; dockerin, X-mo 93.12
2xsu_A312 Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE 90.44
2azq_A311 Catechol 1,2-dioxygenase; CTD, lipid, isozyme, int 88.39
2boy_A254 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxi 88.36
2cdp_A160 Beta-agarase 1; carbohydrate-binding module, hydro 88.13
1uxz_A131 Cellulase B; carbohydrate binding module, CBM6, mi 86.7
3t63_M238 3,4-PCD, protocatechuate 3,4-dioxygenase beta chai 86.45
3th1_A260 Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxy 86.31
2bum_B241 Protocatechuate 3,4-dioxygenase beta chain; oxidor 86.28
1tmx_A293 Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidor 84.35
2bum_A209 Protocatechuate 3,4-dioxygenase alpha chain; oxido 83.71
1dmh_A311 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydroc 82.72
3n9t_A290 PNPC; phospholipid binds, N-terminal helix tunnel, 82.68
2y8k_A491 Arabinoxylanase, carbohydrate binding family 6; hy 81.74
3t63_A200 3,4-PCD, protocatechuate 3,4-dioxygenase alpha cha 81.4
3hhy_A280 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, 81.23
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A Back     alignment and structure
Probab=100.00  E-value=1.4e-129  Score=1084.73  Aligned_cols=494  Identities=19%  Similarity=0.276  Sum_probs=441.2

Q ss_pred             cEEEEEeCcEEEEECC---eEEEEEeCCCeeEEEEEEcCeecccccccCCCcceeeEEEeCCCCCCCceeeeccceEEEE
Q 005706           56 AVRLHIKDHHVVLDNG---ILQVTLSKPGGIVTGIRYNGIDNLLEFRNKETNRGYWDLMWNPPGGKGMFDVISGTSFRVV  132 (682)
Q Consensus        56 ~~~~~~~g~~~vidNg---~l~vtv~k~~G~itsi~y~G~enll~~~~~~~~~gY~D~~w~~~g~~g~~~~~~gt~~~vi  132 (682)
                      ||++++++++||||||   +|+|+|+|++|+||||+|+|+|+|+  .++++|+|       ++  .      ....++ +
T Consensus         1 ~~g~t~~~~~~vvd~g~n~~l~~tv~k~~G~itsi~y~G~e~~~--~~~~s~~g-------sg--~------G~~~~~-~   62 (508)
T 1nkg_A            1 AFGITTSSSAYVIDTNAPNQLKFTVSRSSCDITSIIHYGTELQY--SSQGSHIG-------SG--L------GSATVT-A   62 (508)
T ss_dssp             CCEEEECSSEEEEECCCTTCEEEEEETTTCCEEEEEETTEECBC--SSSCBEET-------TC--C------SSCEEE-E
T ss_pred             CccEEecCCEEEEECCCCCEEEEEEeCCCceEEEEEECCEEccc--cCCCcccc-------cC--C------CcceEE-E
Confidence            5899999999999654   9999999999999999999999665  58899998       22  1      112344 4


Q ss_pred             EecCCEEEEEEEEeecCCCCCCcccceeeEEEEEecCCceeEEEEEeeccccCCCCCccceEEEEEeCccCccceeeecc
Q 005706          133 VENEEQVELSFLRTWASSHEGNYIPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPAFTLGQTRFTFKLRKEKFRYMVIADN  212 (682)
Q Consensus       133 ~~~~~~i~Vs~~~~~~~s~~g~~~~l~l~~~~v~r~G~sgiY~y~~~~~~~~~p~~~lgE~R~v~Rl~~~~f~~~~~~d~  212 (682)
                      .+++++|+|||++       +     +||||||||+|++|||||+++++     +++|+|+|+|||||+++|++      
T Consensus        63 ~~~~~~i~vs~~~-------~-----~l~~~~v~~~g~sg~Y~y~~~~~-----~~~lge~R~v~Rl~~~~f~~------  119 (508)
T 1nkg_A           63 TQSGDYIKVTCVT-------D-----TLTQYMVVHNGDPIIHMATYITA-----EPSIGELRFIARLNSDLLPN------  119 (508)
T ss_dssp             EEETTEEEEEEEC-------S-----SEEEEEEEETTCCEEEEEEEESS-----CCTTSCEEEEEEECTTTCCE------
T ss_pred             EecCCEEEEEEEe-------C-----CceEEEEEeCCCceEEEEEeecc-----CCCCCceEEEEEcChhhCCC------
Confidence            4468999999998       3     89999999999999999999975     78999999999999999975      


Q ss_pred             ccccCCCCcCCCCCCCccccccceeeecCCCCCCCCceeeeeeeccccccccceEEEEeCCCceEEEEEcCCCCcccCCC
Q 005706          213 RHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGP  292 (682)
Q Consensus       213 r~~~mP~~~d~~~~~~~~l~~~da~~l~~~~~~~~~G~~~sKY~~s~~~~D~~vhG~~s~g~~vG~W~I~ps~E~~sGGP  292 (682)
                      .+++||+|+++   ++++++.+|++.+        +|+++||||||+++||++||||+  +++||||||+|++||++|||
T Consensus       120 ~~r~~~~p~~~---~~~~v~~~d~~~l--------~G~~~~KY~~s~~~~D~~vhG~~--~~~vG~w~I~~s~E~~sGGP  186 (508)
T 1nkg_A          120 EEPFGDVSTTA---DGTAIEGSDVFLV--------GSETRSKFYSSERFIDDQRHCIA--GDAHRVCMILNQYESSSGGP  186 (508)
T ss_dssp             EETTGGGGCCT---TCEEEETTTEEEE--------TTEEEEGGGGCCBGGGCSEEEEE--CSSCEEEEECCCCTTCSSCT
T ss_pred             ccccCCCCccc---cCcEeeeccceee--------CCEEccceeccccceecceEEEE--CCCeEEEEEcCCcccccCCC
Confidence            26899999874   5888999999776        79999999999999999999999  59999999999999999999


Q ss_pred             ceeccccccCC---cEEEEEeecccccccceeecCCCCCCceeeeeEEEEEcCCCCCCCcchhHHHHHHHhhhhccCCCC
Q 005706          293 LKQNLTSHVGP---TTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPY  369 (682)
Q Consensus       293 ~kqdL~~h~g~---~~l~y~~s~Hy~g~~~~~~~~~Ge~w~Kv~GP~~~y~N~g~~~~~~~~l~~DA~~~~~~E~~~Wpy  369 (682)
                      |||||++|++|   ++|+||+|+|+    ++++++.|     ||||||||||++++++                 ++|||
T Consensus       187 ~kqdL~~h~~~~~~~~~~y~~s~H~----~t~~~~~g-----~~GP~~~y~n~g~~~~-----------------~~wpy  240 (508)
T 1nkg_A          187 FHRDINSNNGGSYNALYWYMNSGHV----QTESYRMG-----LHGPYSMYFSRSGTPS-----------------TSIDT  240 (508)
T ss_dssp             TCBCCCEEECSSCEEEEEEEECSTT----CCSCCCCE-----EEEEEEEEEESSCCCC-----------------SCCCC
T ss_pred             cchhhhccCCcccceeeeeEeeccc----cccccccc-----ccccEEEEECCCCCCC-----------------CCCCC
Confidence            99999999999   89999999997    46667765     9999999999998863                 68999


Q ss_pred             CCCCC---CCCCCCCCCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeCCccCcee
Q 005706          370 NFPAS---EDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNY  446 (682)
Q Consensus       370 ~f~~s---~~y~~~~qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~nVrpGtY  446 (682)
                      +|++|   ++|||+++||+|+|+|+   |.  .++..++|+|.           +|+|||||+||++|+|+|++||||+|
T Consensus       241 sf~~s~~~~~y~~~~~RGtVsG~V~---G~--~~~~~avv~~~-----------~k~~qywt~td~~G~FtI~~V~pGtY  304 (508)
T 1nkg_A          241 SFFADLDIKGYVAASGRGKVAGTAS---GA--DSSMDWVVHWY-----------NDAAQYWTYTSSSGSFTSPAMKPGTY  304 (508)
T ss_dssp             GGGGGTTCTTCCCGGGCBEEEEEEE---SS--CTTSCEEEEEE-----------CSSCEEEEECCTTCEEECCCBCSEEE
T ss_pred             ccccccCccCCcCcccccEEEEEEc---Cc--cCCceEEEEEc-----------CCCceeEEEECCCCcEEeCCcCCceE
Confidence            99999   99999999999999988   32  14445677764           48999999999999999999999999


Q ss_pred             EEEEEECceeeeeeeeeEEEEeCCceeeecceEEcCCCCCCCeeEEeccCCCccccccCCCCccccccccccCCchhhcc
Q 005706          447 NLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQY  526 (682)
Q Consensus       447 ~L~a~~~G~~G~~~~~~~VtV~aG~t~~lg~l~~~~~~~g~~LWeIGi~Drta~eF~~~d~~~~~~nk~~~~hp~~~R~y  526 (682)
                      +|+||++|+   ...+.+|+|++|++++++ |+|+++ ++++|||||+|||+|.||+++|+.       .+|||+|+|||
T Consensus       305 ~L~a~~~G~---~~~~~~VtV~aG~t~~l~-i~~~~~-~g~~iW~IG~pDrta~eF~~~d~~-------~~~hp~~~r~~  372 (508)
T 1nkg_A          305 TMVYYQGEY---AVATSSVTVSAGSTTTKN-ISGSVK-TGTTIFKIGEWDGQPTGFRNAANQ-------LRMHPSDSRMS  372 (508)
T ss_dssp             EEEEEETTE---EEEEEEEEECTTCEEECC-EECCCC-CCSEEEEEECSSSSCTTSBTHHHH-------TTSCTTCTTSC
T ss_pred             EEEEEECce---EEEEeEEEEcCCCeeEee-eEEecC-CCCeeEEeeCCCCCchhhcCCCcc-------cccCcchhccc
Confidence            999999987   356777999999999996 999876 799999999999999999999843       25799999999


Q ss_pred             cccccccccCCCCCeeEEeeccCCCCCceeEEEEEecCCcccCcccEEEEEEeCCCCCCCcEEEEEEEeccC-CCeEEEE
Q 005706          527 GLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASAT-LAELQVR  605 (682)
Q Consensus       527 glW~~y~~~~P~~dl~ytVG~S~~~~Dw~ya~~~~~~~~~~~~~~~w~I~F~L~~~~~~~~~tLriala~a~-~~~~~V~  605 (682)
                       +|+         ||+||||+|++ +|||||||+  .++     ++|+|+|+|+++| .+++||||+||+|. ++++||+
T Consensus       373 -~W~---------~l~ytVG~S~~-~Dw~ya~~~--~~~-----~~w~I~F~l~~~~-~~~~tLri~la~a~a~~~~qV~  433 (508)
T 1nkg_A          373 -SWG---------PLTYTVGSSAL-TDFPMAVFK--SVN-----NPVTIKFTATSAQ-TGAATLRIGTTLSFAGGRPQAT  433 (508)
T ss_dssp             -CCC---------SCEEETTTSCG-GGSBSEEET--TTT-----CCEEEEEEECGGG-CSCEEEEEEEEEEETTCEEEEE
T ss_pred             -ccC---------CeEEEeCcCch-hcCCeEEEC--CCC-----CcEEEEEEcCccc-CCceEEEEEehhhccCCCeEEE
Confidence             994         79999999999 799999995  555     8999999999987 78999999999985 8999999


Q ss_pred             EcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeCCCeeeeecEEEEEeecCCC--CCc--eEEEEEEEEec
Q 005706          606 VNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTS--PFQ--GIMYDYIRLEG  678 (682)
Q Consensus       606 vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~lt~~~gss--~f~--~vmyD~IrLe~  678 (682)
                      |||+ .. ++|.++.+++||||+||++||+|++++|+||+++|++|+|+|+|+++++++  +||  +|||||||||.
T Consensus       434 VN~~-~~-~~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~lt~~~~s~~~~fls~~vmyD~I~L~~  508 (508)
T 1nkg_A          434 INSY-TG-SAPAAPTNLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVISGSSGDTYLSPNFIFDCVELFQ  508 (508)
T ss_dssp             ETTE-EC-CCCCCCCCCCSCCGGGTCCCSCCCEEEEEECTTSSCSEEEEEEEEEECSCCCSGGGSSEEEEEEEEEEC
T ss_pred             ECCc-CC-cCccccccCCCCeEEecceeeeeEEEEEEEcHHHeecCceEEEEEeccCCCCCccccccEEEEEEEecC
Confidence            9994 33 678899999999999999999999999999999999999999999999986  588  99999999984
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A* Back     alignment and structure
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1 Back     alignment and structure
>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.3.7.1 Back     alignment and structure
>3qec_A Putative carbohydrate binding protein; suramin binding, heparin binding, possible carbohydrate TRAN biofilm formation; HET: PGE; 2.61A {Pseudomonas aeruginosa} Back     alignment and structure
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius} Back     alignment and structure
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A Back     alignment and structure
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum} Back     alignment and structure
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium} Back     alignment and structure
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A Back     alignment and structure
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A* Back     alignment and structure
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B Back     alignment and structure
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A* Back     alignment and structure
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida} Back     alignment and structure
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus} Back     alignment and structure
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A* Back     alignment and structure
>1uxz_A Cellulase B; carbohydrate binding module, CBM6, mixted BETA1, 3-1, 4 linked glucan; 1.4A {Cellvibrio mixtus} SCOP: b.18.1.10 PDB: 1uy0_A* 1uyx_A* 1uyy_A* 1uyz_A* 1uz0_A* Back     alignment and structure
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ... Back     alignment and structure
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida} Back     alignment and structure
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B* Back     alignment and structure
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex} Back     alignment and structure
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A* Back     alignment and structure
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A* Back     alignment and structure
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida} Back     alignment and structure
>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum} Back     alignment and structure
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ... Back     alignment and structure
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 682
d1nkga2171 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, 5e-56
d1nkga187 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, m 3e-04
d1nkga3250 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N 0.002
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Length = 171 Back     information, alignment and structure

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Rhamnogalacturonase B, RhgB, C-terminal domain
domain: Rhamnogalacturonase B, RhgB, C-terminal domain
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  186 bits (473), Expect = 5e-56
 Identities = 39/196 (19%), Positives = 60/196 (30%), Gaps = 33/196 (16%)

Query: 486 GPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTI 545
           G T+++IG  D     F       +        HP   R                L YT+
Sbjct: 2   GTTIFKIGEWDGQPTGF-------RNAANQLRMHPSDSRMSSW----------GPLTYTV 44

Query: 546 GVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATL-AELQV 604
           G S  + D+  A                 IKF         +  LR+    +      Q 
Sbjct: 45  GSSALT-DFPMAVF-------KSVNNPVTIKFTATSAQT-GAATLRIGTTLSFAGGRPQA 95

Query: 605 RVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTS 664
            +N    + P   T        + R    GL  +Y V+IP    + G NTI +     +S
Sbjct: 96  TINSYTGSAPAAPT--NLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVISGSS 153

Query: 665 PFQ----GIMYDYIRL 676
                    ++D + L
Sbjct: 154 GDTYLSPNFIFDCVEL 169
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} Length = 87 Back     information, alignment and structure
>d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Length = 250 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query682
d1nkga3250 Rhamnogalacturonase B, RhgB, N-terminal domain {As 100.0
d1nkga2171 Rhamnogalacturonase B, RhgB, C-terminal domain {As 100.0
d1nkga187 Rhamnogalacturonase B, RhgB, middle domain {Asperg 99.48
d1h8la179 Carboxypeptidase D C-terminal domain {Crested duck 98.55
d1vlfn179 Transhydroxylase beta subunit, BthL, C-terminal do 98.36
d1uwya1107 Carboxypeptidase M C-terminal domain {Human (Homo 97.86
d1xpna_170 Hypothetical protein PA1324 {Pseudomonas aeruginos 95.77
d2b59b296 Cellulosomal scaffolding protein A {Clostridium th 93.13
d2burb1238 Protocatechuate-3,4-dioxygenase, beta chain {Acine 93.02
d1jz8a4293 beta-Galactosidase, domain 5 {Escherichia coli [Ta 92.1
d1w9sa_134 Hypothetical protein BH0236 {Bacillus halodurans [ 91.87
d3pcca_200 Protocatechuate-3,4-dioxygenase, alpha chain {Pseu 90.79
d3pccm_236 Protocatechuate-3,4-dioxygenase, beta chain {Pseud 90.78
d2bura1202 Protocatechuate-3,4-dioxygenase, alpha chain {Acin 89.56
d1dmha_309 Catechol 1,2-dioxygenase {Acinetobacter calcoaceti 89.26
d1s9aa_256 Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus 88.56
d1od3a_132 Putative xylanase {Clostridium stercorarium [TaxId 87.86
d1uxxx_125 Carbohydrate binding module from xylanase U {Clost 85.97
d1cwva194 Invasin {Yersinia pseudotuberculosis [TaxId: 633]} 85.44
d1uy4a_132 Putative xylanase {Clostridium stercorarium [TaxId 84.08
>d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Rhamnogalacturonase B, RhgB, N-terminal domain
domain: Rhamnogalacturonase B, RhgB, N-terminal domain
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=4.8e-53  Score=416.10  Aligned_cols=229  Identities=17%  Similarity=0.266  Sum_probs=205.9

Q ss_pred             cEEEEEeCcEEEEECCe---EEEEEeCCCeeEEEEEEcCeecccccccCCCcceeeEEEeCCCCCCCceeeeccceEEEE
Q 005706           56 AVRLHIKDHHVVLDNGI---LQVTLSKPGGIVTGIRYNGIDNLLEFRNKETNRGYWDLMWNPPGGKGMFDVISGTSFRVV  132 (682)
Q Consensus        56 ~~~~~~~g~~~vidNg~---l~vtv~k~~G~itsi~y~G~enll~~~~~~~~~gY~D~~w~~~g~~g~~~~~~gt~~~vi  132 (682)
                      ||+++++|+++|||.|.   |+|+|+|++|||+||+|+|+| |+ +.+|.+|++       +|         +|++...+
T Consensus         1 aFG~T~sg~~yvVDtga~~~LvF~V~~s~gDitSi~Y~g~E-~Q-~~~k~ShI~-------SG---------LGsatVs~   62 (250)
T d1nkga3           1 AFGITTSSSAYVIDTNAPNQLKFTVSRSSCDITSIIHYGTE-LQ-YSSQGSHIG-------SG---------LGSATVTA   62 (250)
T ss_dssp             CCEEEECSSEEEEECCCTTCEEEEEETTTCCEEEEEETTEE-CB-CSSSCBEET-------TC---------CSSCEEEE
T ss_pred             CcceEecCCcEEEeCCCCcceEEEEecCCCceEEEEECCEE-ee-ccCccceec-------cC---------ccceeEEe
Confidence            68999999999999554   999999999999999999998 64 778999977       54         56777778


Q ss_pred             EecCCEEEEEEEEeecCCCCCCcccceeeEEEEEecCCceeEEEEEeeccccCCCCCccceEEEEEeCccCccceeeecc
Q 005706          133 VENEEQVELSFLRTWASSHEGNYIPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPAFTLGQTRFTFKLRKEKFRYMVIADN  212 (682)
Q Consensus       133 ~~~~~~i~Vs~~~~~~~s~~g~~~~l~l~~~~v~r~G~sgiY~y~~~~~~~~~p~~~lgE~R~v~Rl~~~~f~~~~~~d~  212 (682)
                      ++..++|+|+|+.       +     +|+||||+|+|++.|||++..+.     +++|||||||+||+.++||+..    
T Consensus        63 ~~~~~yIkVT~~~-------~-----tLthYyv~r~G~~~IymaT~~~a-----epsvGelRfIaRL~~~~lPn~~----  121 (250)
T d1nkga3          63 TQSGDYIKVTCVT-------D-----TLTQYMVVHNGDPIIHMATYITA-----EPSIGELRFIARLNSDLLPNEE----  121 (250)
T ss_dssp             EEETTEEEEEEEC-------S-----SEEEEEEEETTCCEEEEEEEESS-----CCTTSCEEEEEEECTTTCCEEE----
T ss_pred             eccCCEEEEEEEe-------c-----CcEEEEEeecCCceEEEEeccCC-----CCCccceeEEEecccccCCCCC----
Confidence            8888999999998       4     89999999999999999999866     7899999999999999999842    


Q ss_pred             ccccCCCCcCCCCCCCccccccceeeecCCCCCCCCceeeeeeeccccccccceEEEEeCCCceEEEEEcCCCCcccCCC
Q 005706          213 RHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGP  292 (682)
Q Consensus       213 r~~~mP~~~d~~~~~~~~l~~~da~~l~~~~~~~~~G~~~sKY~~s~~~~D~~vhG~~s~g~~vG~W~I~ps~E~~sGGP  292 (682)
                           |..+.+.+..+++||.+|+|++        +|+++||||.+.+++|+++|||+  |+.+++|||++++|.+||||
T Consensus       122 -----p~~dvs~t~~~taIEgsDVF~v--------dG~TrSKfYSs~R~IDd~~~~vs--g~~v~v~mi~~~~E~SSGGP  186 (250)
T d1nkga3         122 -----PFGDVSTTADGTAIEGSDVFLV--------GSETRSKFYSSERFIDDQRHCIA--GDAHRVCMILNQYESSSGGP  186 (250)
T ss_dssp             -----TTGGGGCCTTCEEEETTTEEEE--------TTEEEEGGGGCCBGGGCSEEEEE--CSSCEEEEECCCCTTCSSCT
T ss_pred             -----CCccccccCCCcEEecccEEeE--------CCEEehhhccccceecccEEEEe--cCCeEEEEEeCCccccCCCC
Confidence                 3344444466889999999965        79999999999999999999997  89999999999999999999


Q ss_pred             ceeccccccCCc---EEEEEeecccccccceeecCCCCCCceeeeeEEEEEcCCCCCC
Q 005706          293 LKQNLTSHVGPT---TLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGD  347 (682)
Q Consensus       293 ~kqdL~~h~g~~---~l~y~~s~Hy~g~~~~~~~~~Ge~w~Kv~GP~~~y~N~g~~~~  347 (682)
                      |+|||++|.++.   ||+||+|+|.    |||+||.|     |||||.|+|++++.|+
T Consensus       187 FfRdI~~n~~~~~~~Ly~ymnsgH~----QTE~~R~G-----lhGPY~l~Ft~~g~Ps  235 (250)
T d1nkga3         187 FHRDINSNNGGSYNALYWYMNSGHV----QTESYRMG-----LHGPYSMYFSRSGTPS  235 (250)
T ss_dssp             TCBCCCEEECSSCEEEEEEEECSTT----CCSCCCCE-----EEEEEEEEEESSCCCC
T ss_pred             cchhhhhcCCCCccceeEEeecCcc----cchhhhcc-----cCCceEEEEcCCCCCC
Confidence            999999999774   9999999998    68889999     9999999999999875
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]} Back     information, alignment and structure
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]} Back     information, alignment and structure
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xpna_ b.3.7.1 (A:) Hypothetical protein PA1324 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2b59b2 b.3.2.2 (B:8-103) Cellulosomal scaffolding protein A {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1jz8a4 b.30.5.1 (A:731-1023) beta-Galactosidase, domain 5 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w9sa_ b.18.1.10 (A:) Hypothetical protein BH0236 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d3pcca_ b.3.6.1 (A:) Protocatechuate-3,4-dioxygenase, alpha chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2bura1 b.3.6.1 (A:4-200) Protocatechuate-3,4-dioxygenase, alpha chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1s9aa_ b.3.6.1 (A:) Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus [TaxId: 37919]} Back     information, alignment and structure
>d1od3a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]} Back     information, alignment and structure
>d1uxxx_ b.18.1.10 (X:) Carbohydrate binding module from xylanase U {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1cwva1 b.1.14.1 (A:503-596) Invasin {Yersinia pseudotuberculosis [TaxId: 633]} Back     information, alignment and structure
>d1uy4a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]} Back     information, alignment and structure