Citrus Sinensis ID: 005737

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680

MKSMNNDDTNNNNINNDNWLGFSLSPDIKMEVPQDPHPQTQPSSPSTSAVMPPPSVPSSLFQCLPYGFYYGFEGENSSLYSPLPVMPLKSDGSLCIMEALSRSQQPQGMVSTTATTTSTPKLEDFFGGATMGTHHYESNDREAMALSLDSMYYHHNPENEPSSQNCLNQLEENSRHQQQQIQDQQYQYYTTGFRSHEMLLGDKGKEIQVADCNLQLPAMADDGMHGMKNWVSRNYATEQAMQQKLLGCMSHNGGESGDISAMPYGDLQSLSLSMSPASQSSCVTGSQQVSHAVSNCAAVERKKRGSEKMDQKQVAHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVTAVTNFDITRYDVERIMASSNLLAGELARRNKEMGPGNDAPNQNPSAHTGNGDLILSQKDNESDPPDWKLVSYQSSQQLEHKAPNMSIINNYNAHLFSLAPDSVIAMDAMGSAQQEVESSAKMGNHLSNASSLVTSLSSSKEGSPDGSSVPIPFAMPRTASKLLTSPTNTVNSWIPSAELRPALSVPHMPVFAAWTDA

ccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHccccccccccccccccccEEEccccccEEEEEcccccccccccccccEEEccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccHHHHcccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccEEHHcccccccccccccccccccccccHHHHcccccccccccccccHHHHHccccccEEccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccHHHHHHcccccHHHHHccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccEEEEcccccEEEEEEccccccccccccccEEEEccccHHHHHHHHHHHHHHHHcccccEEcccHHHHHHHHHHHHHccHHHHHHHHHHccccccccccEEccccHccccccEEEEEEEEccccEEEEEccccHHHHHHHHHHHHHHHcccccEEccccccccHHHccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccHHHccEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHHcccccccccccccccccccccccccccEEEEEccc

mksmnnddtnnnninndnwlgfslspdikmevpqdphpqtqpsspstsavmpppsvpsslfqclpygfyygfegensslysplpvmplksdgsLCIMEALsrsqqpqgmvsttatttstpkledffggatmgthhyesndREAMALSLDSMyyhhnpenepssqnCLNQLEENSRHQQQQIQDQQYQYYTtgfrshemllgdkgkeiQVADcnlqlpamaddgmhgmknWVSRNYATEQAMQQKLLGCmshnggesgdisampygdlqslslsmspasqsscvtgsqqvSHAVSNCAAVErkkrgsekmdqKQVAHRKSldtfgqrtsqyrgvtrhrwtgryeahlwdnsckkegqsrkgrqvylggYDMEEKAARAYDLAALkywgpsthinfplENYQKELEEMKNMNRQEYVAHLRRkssgfsrgasiyrgvtrhhqhgrwqarigrvagnkdlylgtfSTQEEAAEAYDIAAIKFRgvtavtnfditrYDVERIMASSNLLAGELARrnkemgpgndapnqnpsahtgngdlilsqkdnesdppdwklVSYQSSqqlehkapnmsiinnynahlfslapdSVIAMDAMGSAQQEVESSAKMGNHLSNASSLVTSlssskegspdgssvpipfamprtasklltsptntvnswipsaelrpalsvphmpvfaawtda

mksmnnddtnnnninndnWLGFSLSPDIKMEVPQDPHPQTQPSSPSTSAVMPPPSVPSSLFQCLPYGFYYGFEGENSSLYSPLPVMPLKSDGSLCIMEALsrsqqpqgmvsttatttstpklEDFFGGATMGTHHYESNDREAMALSLDSMYYHHNPENEPSSQNCLNQLEENSRHQQQQIQDQQYQYYTTGFRSHEMLLGDKGKEIQVADCNLQLPAMADDGMHGMKNWVSRNYATEQAMQQKLLGCMSHNGGESGDISAMPYGDLQSLSLSMSPASQSSCVTGSQQVSHAVSNCAAVerkkrgsekmdqkqvahrksldtfgqrtsqyrgvtrhrwtgryeahlwdnsckkegqsrkgrqVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMNRQEYVAHLrrkssgfsrgASIYrgvtrhhqhgrwqarigrvagNKDLYLGTFSTQEEAAEAYDIAAIKFRGVTAVTNFDITRYDVERIMASSNLLAGELARRNKEMGPGNDAPNQNPSAHTGNGDLILSQKDNESDPPDWKLVSYQSSQQLEHKAPNMSIINNYNAHLFSLAPDSVIAMDAMGSAQQEVESSAKMGNHLSNASSLVTSLSSSKEGSPDGSSVPIPFAMPRTASKLLTSPTNTVNSWIPSAelrpalsvphmPVFAAWTDA

MKSMnnddtnnnninndnWLGFSLSPDIKMEVpqdphpqtqpsspstsavmpppsvpssLFQCLPYGFYYGFEGENSSLYSPLPVMPLKSDGSLCIMEALSRSQQPQGMVsttatttstPKLEDFFGGATMGTHHYESNDREAMALSLDSMYYHHNPENEPSSQNCLNQLEENSRHqqqqiqdqqyqyyTTGFRSHEMLLGDKGKEIQVADCNLQLPAMADDGMHGMKNWVSRNYATEQAMQQKLLGCMSHNGGESGDISAMPYGDlqslslsmspasqssCVTGSQQVSHAVSNCAAVERKKRGSEKMDQKQVAHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQeeaaeaYDIAAIKFRGVTAVTNFDITRYDVERIMASSNLLAGELARRNKEMGPGNDAPNQNPSAHTGNGDLILSQKDNESDPPDWKLVSYQSSQQLEHKAPNMSIINNYNAHLFSLAPDSVIAMDAMGSAQQEVESSAKMGNHlsnasslvtslssskegspdgssVPIPFAMPRTASKLLTSPTNTVNSWIPSAELRPALSVPHMPVFAAWTDA

******************WLG**************************************LFQCLPYGFYYGFEGENSSLYSPLPVMPL****SLCI****************************************************************************************QYQYYTTGFRSHEMLLGDKGKEIQVADCNLQLPAMADDGMHGMKNWVSRNYAT*******LL**********************************************************************************QYRGVTRHRWTGRYEAHLWDNSCK********RQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQ*************YVA********FSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVTAVTNFDITRYDVERIMASSNLL***************************************************************SIINNYNAHLFSLAPDSVI******************************************************************NSWIPSAELRPALSVPHMPVFAAW***

*************INNDNWLGFSL*********************************SSLFQCLPYGFYYGFEGENSSLYSPLPVMPLKSDGSLCIMEAL********************KLEDFFGGATMGT********************************************************************************************************************************************************************************************************TRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVTAVTNFDITRY*****************************************************************************************************************************************************************************SVPHMPVFAAWTDA

********TNNNNINNDNWLGFSLSPDIKMEV***********************VPSSLFQCLPYGFYYGFEGENSSLYSPLPVMPLKSDGSLCIMEALS**************TTSTPKLEDFFGGATMGTHHYESNDREAMALSLDSMYYHHNPENEPSSQNCLNQLE************QQYQYYTTGFRSHEMLLGDKGKEIQVADCNLQLPAMADDGMHGMKNWVSRNYATEQAMQQKLLGCMSHNGGESGDISAMPYGDLQSLS***********************************************SLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGV*********QARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVTAVTNFDITRYDVERIMASSNLLAGELARRNKEMGPGNDAPNQNPSAHTGNGDLILSQKDNESDPPDWKLVSYQSSQQLEHKAPNMSIINNYNAHLFSLAPDSVIAMDAM***********KMGNHLSNA******************SVPIPFAMPRTASKLLTSPTNTVNSWIPSAELRPALSVPHMPVFAAWTDA

******************WLGF*LSP*************************PPPSVPSSLFQCLPYGFYYGFEGENSSLYSPLPVMPLKSDGSLCIMEALS******************PKLEDFFGGATMGTHHYESNDREAMALSLDSMYYHHNPE***SSQNCLNQLEENSRHQQQQIQDQQYQYYTTGFRSHEMLLGDKGKEIQVADCNLQLPAMADDGMHGMKNWVSRNYATEQAMQQKLLGC*********DISAMPYGDLQSL******************************************************QRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVTAVTNFDITRYDVERIMASSNLLAG**********************************************************PNMSIINNYNAHLFSLAPDSVIAMDAMG************************************SSVPIPFAMPRTASKLLTSPTNTVNSWIPSAELRPALSVPHMPVFAAWTDA

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MKSMNNDDTNNNNINNDNWLGFSLSPDIKMEVPQDPHPQTQPSSPSTSAVMPPPSVPSSLFQCLPYGFYYGFEGENSSLYSPLPVMPLKSDGSLCIMEALSRSQQPQGMVSTTATTTSTPKLEDFFGGATMGTHHYESNDREAMALSLDSMYYHHNPENEPSSQNCxxxxxxxxxxxxxxxxxxxxxYYTTGFRSHEMLLGDKGKEIQVADCNLQLPAMADDGMHGMKNWVSRNYATEQAMQQKLLGCMSHNGGESGDISAMPYGDLQSLSLSMSPASQSSCVTGSQQVSHAVSNCAAVERKKRGSEKMDQKQVAHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPxxxxxxxxxxxxxxxxxxxxxHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVTAVTNFDITRYDVERIMASSNLLAGELARRNKEMGPGNDAPNQNPSAHTGNGDLILSQKDNESDPPDWKLVSYQSSQQLEHKAPNMSIINNYNAHLFSLAPDSVIAMDAMGSAQQEVESSAKMGNHLSNASSLVTSLSSSKEGSPDGSSVPIPFAMPRTASKLLTSPTNTVNSWIPSAELRPALSVPHMPVFAAWTDA

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		680	2.2.26 [Sep-21-2011]
Q38914		555	AP2-like ethylene-respons	yes	no	0.641	0.785	0.523	1e-136
Q1PFE1		415	AP2-like ethylene-respons	no	no	0.355	0.583	0.723	1e-102
Q5YGP7		568	AP2-like ethylene-respons	no	no	0.361	0.433	0.688	8e-99
Q5YGP8		574	AP2-like ethylene-respons	no	no	0.357	0.423	0.693	6e-98
Q8LSN2		579	AP2-like ethylene-respons	N/A	no	0.348	0.409	0.689	7e-97
Q8L3U3		579	AP2-like ethylene-respons	N/A	no	0.348	0.409	0.689	7e-97
Q6PQQ3		558	AP2-like ethylene-respons	no	no	0.316	0.385	0.754	4e-96
Q6PQQ4		584	AP2-like ethylene-respons	no	no	0.305	0.356	0.774	2e-95
Q6J9N8		498	AP2-like ethylene-respons	no	no	0.342	0.467	0.657	5e-84
Q52QU2		581	AP2-like ethylene-respons	no	no	0.307	0.359	0.718	9e-80

>sp\|Q38914\|ANT_ARATH AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2	Back alignment and function desciption

 Score =  486 bits (1251), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 285/544 (52%), Positives = 336/544 (61%), Gaps = 108/544 (19%)

Query: 1   MKSMNNDDTNNNNINNDNWLGFSLSPDIKMEVPQDPHPQTQPSSPSTSAVMPPPSVPSSL 60
           MKS  ++D +NN+ N  N LGFSLS ++ M++      +   SS ++SA     SVP  L
Sbjct: 1   MKSFCDND-DNNHSNTTNLLGFSLSSNM-MKMGGRGGREAIYSSSTSSAATSSSSVPPQL 58

Query: 61  F---QCLPYGFYYGFEGENSSLYSPLPVMPLKSDGSLCIMEALSRSQQPQGMVSTTATTT 117
                   +G  YG    N  +YS + VMPL+SDGSLC+MEAL+RS        +     
Sbjct: 59  VVGDNTSNFGVCYG-SNPNGGIYSHMSVMPLRSDGSLCLMEALNRSSH------SNHHQD 111

Query: 118 STPKLEDFFGGATMGTHHYESNDREAMALSLDSMYYHHNPENEPSSQNCLNQLEENSRHQ 177
           S+PK+EDFFG     THH  ++ +EAM LSLDS++Y                   N+ H+
Sbjct: 112 SSPKVEDFFG-----THHNNTSHKEAMDLSLDSLFY-------------------NTTHE 147

Query: 178 QQQIQDQQYQYYTTGFRSHEMLLGDKGKEIQVADCNLQLPAMADDGMHGMKNWVSRNYAT 237
                + Q  +     R+HE                                  +RNY  
Sbjct: 148 PNTTTNFQEFFSFPQTRNHEE--------------------------------ETRNYGN 175

Query: 238 EQAMQQKLLGCMSHNGGESGDISAMPYGDLQ-SLSLSMSPASQSSCVTGSQQ-------- 288
           + ++               G  +   YG+ Q SLSLSMSP SQSSC+TGS          
Sbjct: 176 DPSLTH------------GGSFNVGVYGEFQQSLSLSMSPGSQSSCITGSHHHQQNQNQN 223

Query: 289 --------VSHAV--------SNCAAVERKKRGSEKM---DQKQVAHRKSLDTFGQRTSQ 329
                   +S A+        +   A  +KKRG E +    QKQ+ HRKS+DTFGQRTSQ
Sbjct: 224 HQSQNHQQISEALVETSVGFETTTMAAAKKKRGQEDVVVVGQKQIVHRKSIDTFGQRTSQ 283

Query: 330 YRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPS 389
           YRGVTRHRWTGRYEAHLWDNS KKEG SRKGRQVYLGGYDMEEKAARAYDLAALKYWGPS
Sbjct: 284 YRGVTRHRWTGRYEAHLWDNSFKKEGHSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPS 343

Query: 390 THINFPLENYQKELEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIG 449
           TH NF  ENYQKE+E+MKNM RQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIG
Sbjct: 344 THTNFSAENYQKEIEDMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIG 403

Query: 450 RVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVTAVTNFDITRYDVERIMASSNLLAGEL 509
           RVAGNKDLYLGTF TQEEAAEAYD+AAIKFRG  AVTNFDITRYDV+RIM+S+ LL+GEL
Sbjct: 404 RVAGNKDLYLGTFGTQEEAAEAYDVAAIKFRGTNAVTNFDITRYDVDRIMSSNTLLSGEL 463

Query: 510 ARRN 513
           ARRN
Sbjct: 464 ARRN 467

Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q1PFE1\|AIL1_ARATH AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1	Back alignment and function description

>sp\|Q5YGP7\|PLET2_ARATH AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1	Back alignment and function description

>sp\|Q5YGP8\|PLET1_ARATH AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1	Back alignment and function description

>sp\|Q8LSN2\|BBM2_BRANA AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus GN=BBM2 PE=2 SV=1	Back alignment and function description

>sp\|Q8L3U3\|BBM1_BRANA AP2-like ethylene-responsive transcription factor BBM1 OS=Brassica napus GN=BBM1 PE=2 SV=1	Back alignment and function description

>sp\|Q6PQQ3\|AIL5_ARATH AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana GN=AIL5 PE=2 SV=2	Back alignment and function description

>sp\|Q6PQQ4\|BBM_ARATH AP2-like ethylene-responsive transcription factor BBM OS=Arabidopsis thaliana GN=BBM PE=2 SV=2	Back alignment and function description

>sp\|Q6J9N8\|AIL7_ARATH AP2-like ethylene-responsive transcription factor AIL7 OS=Arabidopsis thaliana GN=AIL7 PE=2 SV=2	Back alignment and function description

>sp\|Q52QU2\|AIL6_ARATH AP2-like ethylene-responsive transcription factor AIL6 OS=Arabidopsis thaliana GN=AIL6 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		680
359494798		653	PREDICTED: AP2-like ethylene-responsive	0.938	0.977	0.731	0.0
224127204		659	AP2 domain-containing transcription fact	0.936	0.966	0.696	0.0
359492526		674	PREDICTED: AP2-like ethylene-responsive	0.941	0.949	0.613	0.0
449451557		608	PREDICTED: AP2-like ethylene-responsive	0.861	0.963	0.612	0.0
296090642		533	unnamed protein product [Vitis vinifera]	0.701	0.894	0.724	0.0
147797632		908	hypothetical protein VITISV_038909 [Viti	0.772	0.578	0.663	0.0
224067164		637	AP2 domain-containing transcription fact	0.898	0.959	0.593	0.0
356514362		660	PREDICTED: AP2-like ethylene-responsive	0.947	0.975	0.607	0.0
224084478		639	AP2 domain-containing transcription fact	0.895	0.953	0.606	0.0
356565465		671	PREDICTED: uncharacterized protein LOC10	0.941	0.953	0.597	0.0

>gi\|359494798\|ref\|XP_002263597.2\| PREDICTED: AP2-like ethylene-responsive transcription factor ANT-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  914 bits (2361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/666 (73%), Positives = 543/666 (81%), Gaps = 28/666 (4%)

Query: 30  MEVPQDPHP--QTQPSSPSTSAVMPPPSVPSSLFQC---LPY-GFYYGFEGENSSLYSPL 83
           M+VP DPH   QTQP  P+ +AV  P  V +  F     L Y G YYG EGEN   YSPL
Sbjct: 1   MDVPSDPHHHHQTQPP-PTLTAVSTP--VSTGFFPSPSHLNYSGIYYGVEGENGGFYSPL 57

Query: 84  PVMPLKSDGSLCIMEALSRSQQPQGMVSTTATTTSTPKLEDFFGGATMGTHHYESNDREA 143
            VMPLKSDGSLCIMEALSRSQ PQGMV T     STPKLEDFFGGATMGTHHYESNDREA
Sbjct: 58  SVMPLKSDGSLCIMEALSRSQ-PQGMVPT-----STPKLEDFFGGATMGTHHYESNDREA 111

Query: 144 MALSLDSMYYHHNPENEPSSQNCLNQLEENSRHQQQQIQDQQYQYYTTGFRSHEML---L 200
           MALSLDSMYYH NPENEP+SQNCLNQL+ NSR QQQQ+   Q   Y +GFRSHEM    L
Sbjct: 112 MALSLDSMYYHQNPENEPNSQNCLNQLQSNSRQQQQQLIQLQQYPYVSGFRSHEMFHTPL 171

Query: 201 GDKGKEIQVA-DCNLQLPAMADDGMHGMKNWVSRNYATEQAMQQKLLGCMSHNGGESGDI 259
            ++ KE Q+A D NLQLP MAD G+ GMKNWVSRNY T ++++ K++GCMS NGGESG +
Sbjct: 172 VEETKETQLAADGNLQLPNMADTGLPGMKNWVSRNYPTNESLEHKMIGCMSDNGGESGSM 231

Query: 260 SAMPYGDLQSLSLSMSPASQSSCVTGSQQVSHAVSNCAAVERKKRGSEKMDQKQVAHRKS 319
           S M YGDLQSLSLSMSP SQSSCVTGSQQ+S  V+ C A++ KKRG +K+DQKQ+ HRKS
Sbjct: 232 STMGYGDLQSLSLSMSPGSQSSCVTGSQQISPTVTECVAMDTKKRGPDKVDQKQIVHRKS 291

Query: 320 LDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYD 379
           LDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQ   GGYDMEEKAARAYD
Sbjct: 292 LDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQ---GGYDMEEKAARAYD 348

Query: 380 LAALKYWGPSTHINFPLENYQKELEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVT-RH 438
           LAALKYWGPSTHINFPLENYQ+ELE MKNM RQEYVAHLRRKSSGFSRGAS+YRGVT RH
Sbjct: 349 LAALKYWGPSTHINFPLENYQQELENMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTSRH 408

Query: 439 HQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVTAVTNFDITRYDVERI 498
           HQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGV AVTNFDITRYDVERI
Sbjct: 409 HQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVERI 468

Query: 499 MASSNLLAGELARRNKEMGPGNDAPNQNPSAHTGNGDLILSQKDNESDPPDWKLVSYQSS 558
           MASSNLLAGELA+RNK+M   ++A N NPS HT +G+ ILSQ++N+S+   WK+V YQSS
Sbjct: 469 MASSNLLAGELAKRNKDMESTSEAKNLNPSVHTSSGEAILSQENNQSE-SGWKMVLYQSS 527

Query: 559 QQ----LEHKAPNMSIINNYNAHLFSLAPDSVIAMDAMGSAQQEVESSAKMGNHLSNASS 614
           QQ    L+         ++Y A  F +AP +++ MDAMG AQQE E SAKMG HLSNASS
Sbjct: 528 QQSNSCLKQLDQKPLSFDHYRAPSFPVAPHNLMGMDAMGPAQQEAEDSAKMGTHLSNASS 587

Query: 615 LVTSLSSSKEGSPDGSSVPIPFAMPRTASKLLTSPTNTVNSWIPSAELRPALSVPHMPVF 674
           LVTSLSSS+EGSPD +S+P+ FA+P +A K   +P NTVNSWIPSA+LRPA+ +PHMPVF
Sbjct: 588 LVTSLSSSREGSPDKTSLPMLFAIPPSAPKFFATPANTVNSWIPSAQLRPAIPMPHMPVF 647

Query: 675 AAWTDA 680
           AAWTD 
Sbjct: 648 AAWTDG 653

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224127204\|ref\|XP_002320013.1\| AP2 domain-containing transcription factor [Populus trichocarpa] gi\|222860786\|gb\|EEE98328.1\| AP2 domain-containing transcription factor [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359492526\|ref\|XP_002285467.2\| PREDICTED: AP2-like ethylene-responsive transcription factor ANT-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449451557\|ref\|XP_004143528.1\| PREDICTED: AP2-like ethylene-responsive transcription factor ANT-like [Cucumis sativus] gi\|449532844\|ref\|XP_004173388.1\| PREDICTED: AP2-like ethylene-responsive transcription factor ANT-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|296090642\|emb\|CBI41041.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147797632\|emb\|CAN71938.1\| hypothetical protein VITISV_038909 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224067164\|ref\|XP_002302387.1\| AP2 domain-containing transcription factor [Populus trichocarpa] gi\|222844113\|gb\|EEE81660.1\| AP2 domain-containing transcription factor [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356514362\|ref\|XP_003525875.1\| PREDICTED: AP2-like ethylene-responsive transcription factor ANT-like [Glycine max]	Back alignment and taxonomy information

>gi\|224084478\|ref\|XP_002307311.1\| AP2 domain-containing transcription factor [Populus trichocarpa] gi\|222856760\|gb\|EEE94307.1\| AP2 domain-containing transcription factor [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356565465\|ref\|XP_003550960.1\| PREDICTED: uncharacterized protein LOC100792451 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		680
TAIR\|locus:2137559		555	ANT "AINTEGUMENTA" [Arabidopsi	0.410	0.502	0.671	1.1e-116
TAIR\|locus:2030265		415	AT1G72570 [Arabidopsis thalian	0.325	0.532	0.743	2.7e-92
TAIR\|locus:2091891		574	PLT1 "PLETHORA 1" [Arabidopsis	0.292	0.346	0.785	8.7e-91
TAIR\|locus:2178915		584	BBM "BABY BOOM" [Arabidopsis t	0.313	0.364	0.730	4.2e-89
TAIR\|locus:2008216		568	PLT2 "PLETHORA 2" [Arabidopsis	0.292	0.350	0.79	8e-89
TAIR\|locus:2173009		558	AIL5 "AINTEGUMENTA-like 5" [Ar	0.360	0.439	0.650	1.3e-86
TAIR\|locus:2155680		498	AIL7 "AINTEGUMENTA-like 7" [Ar	0.360	0.491	0.619	3.5e-84
TAIR\|locus:2200477		345	ADAP "ARIA-interacting double	0.330	0.652	0.557	4.8e-62
TAIR\|locus:2017829		313	WRI4 "WRINKLED 4" [Arabidopsis	0.3	0.651	0.575	6.2e-62
TAIR\|locus:2005493		432	AP2 "APETALA 2" [Arabidopsis t	0.280	0.442	0.467	2.8e-41

TAIR\|locus:2137559 ANT "AINTEGUMENTA" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 981 (350.4 bits), Expect = 1.1e-116, Sum P(2) = 1.1e-116
 Identities = 200/298 (67%), Positives = 226/298 (75%)

Query:   298 AVERKKRGSEKM---DQKQVAHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKE 354
             A  +KKRG E +    QKQ+ HRKS+DTFGQRTSQYRGVTRHRWTGRYEAHLWDNS KKE
Sbjct:   249 AAAKKKRGQEDVVVVGQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSFKKE 308

Query:   355 GQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMNRQEY 414
             G SRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTH NF  ENYQKE+E+MKNM RQEY
Sbjct:   309 GHSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFSAENYQKEIEDMKNMTRQEY 368

Query:   415 VAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQXXXXXXYDI 474
             VAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTF TQ      YD+
Sbjct:   369 VAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDV 428

Query:   475 AAIKFRGVTAVTNFDITRYDVERIMASSNLLAGELARRNKEMGPGNDAPNQNPSAHTGNG 534
             AAIKFRG  AVTNFDITRYDV+RIM+S+ LL+GELARRN      N    +N    T   
Sbjct:   429 AAIKFRGTNAVTNFDITRYDVDRIMSSNTLLSGELARRNN-----NSIVVRNTEDQTALN 483

Query:   535 DLILSQKDNESDPPDWKLVSY-------QSSQQL--EHKAPNMSI-INNYNAHLFSLA 582
              ++    + E   P+ +L+S+       Q +Q++   +   NMS   +N NA L ++A
Sbjct:   484 AVVEGGSNKEVSTPE-RLLSFPAIFALPQVNQKMFGSNMGGNMSPWTSNPNAELKTVA 540

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0042127 "regulation of cell proliferation" evidence=RCA;IMP

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=IMP;RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0007276 "gamete generation" evidence=IMP

TAIR\|locus:2030265 AT1G72570 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091891 PLT1 "PLETHORA 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2178915 BBM "BABY BOOM" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2008216 PLT2 "PLETHORA 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2173009 AIL5 "AINTEGUMENTA-like 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2155680 AIL7 "AINTEGUMENTA-like 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2200477 ADAP "ARIA-interacting double AP2 domain protein" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2017829 WRI4 "WRINKLED 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2005493 AP2 "APETALA 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38914	ANT_ARATH	No assigned EC number	0.5238	0.6411	0.7855	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		680
smart00380		64	smart00380, AP2, DNA-binding domain in plant prote	8e-28
smart00380		64	smart00380, AP2, DNA-binding domain in plant prote	1e-24
cd00018		61	cd00018, AP2, DNA-binding domain found in transcri	1e-24
cd00018		61	cd00018, AP2, DNA-binding domain found in transcri	1e-21
pfam00847		53	pfam00847, AP2, AP2 domain	6e-12
pfam00847		53	pfam00847, AP2, AP2 domain	5e-11

>gnl\|CDD\|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs	Back alignment and domain information

 Score =  105 bits (265), Expect = 8e-28
 Identities = 32/65 (49%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 431 IYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVTAVTNFDI 490
            YRGV +    G+W A I   +  K ++LGTF T EEAA AYD AA KFRG +A  NF  
Sbjct: 1   KYRGVRQRPW-GKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Query: 491 TRYDV 495
           + YD 
Sbjct: 60  SLYDS 64

Length = 64

>gnl\|CDD\|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs	Back alignment and domain information

>gnl\|CDD\|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)	Back alignment and domain information

>gnl\|CDD\|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)	Back alignment and domain information

>gnl\|CDD\|216148 pfam00847, AP2, AP2 domain	Back alignment and domain information

>gnl\|CDD\|216148 pfam00847, AP2, AP2 domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		680
cd00018		61	AP2 DNA-binding domain found in transcription regu	99.7
smart00380		64	AP2 DNA-binding domain in plant proteins such as A	99.69
smart00380		64	AP2 DNA-binding domain in plant proteins such as A	99.68
cd00018		61	AP2 DNA-binding domain found in transcription regu	99.67
PHA00280		121	putative NHN endonuclease	99.41
PHA00280		121	putative NHN endonuclease	99.07
PF00847		56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	98.9
PF00847		56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	98.86

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)	Back alignment and domain information

Probab=99.70  E-value=2.2e-17  Score=134.46  Aligned_cols=61  Identities=51%  Similarity=0.891  Sum_probs=56.6

Q ss_pred             cccccceeecCCCeeEEEEecCCccccCcccCCcEEecCccccHHHHHHHHHHHHHhccCCCcccCCCcc
Q 005737          328 SQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLE  397 (680)
Q Consensus       328 S~YRGVrrrk~tGRW~AeI~~~s~~~~~~~rkGkri~LGtFdTeEeAARAYD~AAlkl~G~~A~lNFPls  397 (680)
                      |+||||+++++ |||+|+|+++.        .|+++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         1 s~~~GV~~~~~-gkw~A~I~~~~--------~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPW-GKWVAEIRDPS--------GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCC-CcEEEEEEeCC--------CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            68999999998 99999999852        489999999999999999999999999999999999963

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs	Back alignment and domain information

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs	Back alignment and domain information

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)	Back alignment and domain information

>PHA00280 putative NHN endonuclease	Back alignment and domain information

>PHA00280 putative NHN endonuclease	Back alignment and domain information

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes	Back alignment and domain information

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		680
1gcc_A		63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		2e-04
2gcc_A		70	Solution Structure Of The Gcc-Box Binding Domain, N		3e-04

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Back alignment and structure

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 329 QYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGP 388
            YRGV +  W G++ A + D        ++ G +V+LG ++  E AA AYD AA +  G 
Sbjct: 2   HYRGVRQRPW-GKFAAEIRD-------PAKNGARVWLGTFETAEDAALAYDRAAFRMRGS 53
Query: 389 STHINFPL 396
              +NFPL
Sbjct: 54  RALLNFPL 61

PyMOL of 1gcc

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		680
1gcc_A		63	Ethylene responsive element binding factor 1; tran	2e-15
1gcc_A		63	Ethylene responsive element binding factor 1; tran	4e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63	Back alignment and structure

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 329 QYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGP 388
            YRGV +  W G++ A + D        ++ G +V+LG ++  E AA AYD AA +  G 
Sbjct: 2   HYRGVRQRPW-GKFAAEIRD-------PAKNGARVWLGTFETAEDAALAYDRAAFRMRGS 53

Query: 389 STHINFPLE 397
              +NFPL 
Sbjct: 54  RALLNFPLR 62

PyMOL of 1gcc

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 56.4 bits (135), Expect = 2e-08
 Identities = 87/612 (14%), Positives = 175/612 (28%), Gaps = 171/612 (27%)

Query: 123 EDFFGGA-------TMGTHHYESNDREAMALSLDSMY-YHHNP---ENEPSSQNCLNQLE 171
           + F            M     E      M      MY    +    +N+  ++  +++L+
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMT----RMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 172 ENSRHQQQQIQDQQYQYYTTGFRSHEMLLGDKGKEIQVAD-C-NLQLPAMADDGMHGMKN 229
              + +Q  ++ +  +          +L G  GK     D C + ++    D  +     
Sbjct: 136 PYLKLRQALLELRPAKNVLI----DGVL-G-SGKTWVALDVCLSYKVQCKMDFKIF---- 185

Query: 230 WVS-RNYATEQA---MQQKLLGCMSHNGGESGDISAMPYGDLQSLSLSMSPASQSSCVTG 285
           W++ +N  + +    M QKLL  +  N     D S+     + S+   +           
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR---------- 235

Query: 286 SQQVSHAVSNCAAVERKKRGSEKMDQKQVAHRKSLDTFGQR-----TSQYRGVTRHRWTG 340
               S    NC  V         +    V + K+ + F        T++++ VT    + 
Sbjct: 236 RLLKSKPYENCLLV---------LL--NVQNAKAWNAFNLSCKILLTTRFKQVTD-FLSA 283

Query: 341 RYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQ 400
               H+  +                     +E       L   KY          L+   
Sbjct: 284 ATTTHISLDHHSM-------------TLTPDE----VKSLLL-KY----------LDCRP 315

Query: 401 KEL-EEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNK---- 455
           ++L  E+   N +     L    S      SI            W      V  +K    
Sbjct: 316 QDLPREVLTTNPR----RL----SII--AESI------RDGLATWD-NWKHVNCDKLTTI 358

Query: 456 -DLYLGTFSTQEEAAEAYDIAAIKFR-------GVTAVTNFDITRYDVERIMASSNLLAG 507
            +  L       E  + +D  ++ F         + ++  FD+ + DV  ++   N L  
Sbjct: 359 IESSLNVLEP-AEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVV---NKLHK 413

Query: 508 E--LARRNKEMGPGNDAPNQNPSAHTGNGDLILSQKDNESDPPDW--KLV-SYQSSQQLE 562
              + ++ KE            S       + L  K    +       +V  Y   +  +
Sbjct: 414 YSLVEKQPKES---------TISIP----SIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 563 HKAPNMSIINNY-------------NAHLFSLAPDSVIAMDAMGSAQQEVESSAKMGNHL 609
                   ++ Y             +    +L     + +D     +Q++   +   N  
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM--VFLD-FRFLEQKIRHDSTAWNAS 517

Query: 610 SNASSLVTSLSSSKEGSPDGSSVP-------IPFAMPRTASKLLTSPTNTVNSWIPSAEL 662
            +  + +  L   K    D            + F +P+    L+ S    +        L
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDF-LPKIEENLICSKYTDL--------L 568

Query: 663 RPALSVPHMPVF 674
           R AL      +F
Sbjct: 569 RIALMAEDEAIF 580

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		680
1gcc_A		63	Ethylene responsive element binding factor 1; tran	99.83
1gcc_A		63	Ethylene responsive element binding factor 1; tran	99.77
1u3e_M		174	HNH homing endonuclease; HNH catalytic motif, heli	93.18
3igm_B		77	PF14_0633 protein; AP2 domain, specific transcript	83.86
3igm_B		77	PF14_0633 protein; AP2 domain, specific transcript	82.05

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A	Back alignment and structure

Probab=99.83  E-value=3.5e-21  Score=158.50  Aligned_cols=61  Identities=41%  Similarity=0.850  Sum_probs=56.4

Q ss_pred             ccccceeecCCCeeEEEEecCCccccCcccCCcEEecCccccHHHHHHHHHHHHHhccCCCcccCCCcc
Q 005737          329 QYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLE  397 (680)
Q Consensus       329 ~YRGVrrrk~tGRW~AeI~~~s~~~~~~~rkGkri~LGtFdTeEeAARAYD~AAlkl~G~~A~lNFPls  397 (680)
                      +||||++++| |||+|+|+++.       ++|++||||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         2 ~yrGV~~r~~-gkw~A~I~~~~-------~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPW-GKFAAEIRDPA-------KNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETT-TEEEEEEEETT-------TTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCC-CcEEEEEcccc-------CCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            5999999987 99999999962       3589999999999999999999999999999999999964

PyMOL of 1gcc

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A	Back alignment and structure

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1	Back alignment and structure

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}	Back alignment and structure

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		680
d1gcca_		63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	3e-25
d1gcca_		63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	3e-20

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 96.7 bits (241), Expect = 3e-25
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 329 QYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGP 388
            YRGV +  W G++ A + D +       + G +V+LG ++  E AA AYD AA +  G 
Sbjct: 2   HYRGVRQRPW-GKFAAEIRDPA-------KNGARVWLGTFETAEDAALAYDRAAFRMRGS 53

Query: 389 STHINFPLE 397
              +NFPL 
Sbjct: 54  RALLNFPLR 62

PyMOL of d1gcca_

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		680
d1gcca_		63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.85
d1gcca_		63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.78

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=2.5e-22  Score=163.77  Aligned_cols=61  Identities=41%  Similarity=0.850  Sum_probs=56.7

Q ss_pred             ccccceeecCCCeeEEEEecCCccccCcccCCcEEecCccccHHHHHHHHHHHHHhccCCCcccCCCcc
Q 005737          329 QYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLE  397 (680)
Q Consensus       329 ~YRGVrrrk~tGRW~AeI~~~s~~~~~~~rkGkri~LGtFdTeEeAARAYD~AAlkl~G~~A~lNFPls  397 (680)
                      +||||+++++ |||+|+||++       .++++++|||+|+|+||||||||.|+++++|+.+.+|||++
T Consensus         2 ~yrGVr~r~~-gkw~A~Ir~~-------~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPW-GKFAAEIRDP-------AKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETT-TEEEEEEEET-------TTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCC-CCEEEEEecC-------CCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            4999999886 9999999986       35789999999999999999999999999999999999975

PyMOL of d1gcca_

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure