Citrus Sinensis ID: 005744

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------68
Protein Sequence
MQSYEYSEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEKLLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWVVQKK
Secondary Structure (PSIPRED)
ccccccccEEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccHHHHHccccccccHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccccEEEccHHHHHHHHHHHccEEEEEcccccccccccccccccEEEEccccccccccccccccccEEEEEEccccccccccHHHcccccccEEEccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccHHHcccccccEEEccccccccccccccccccccccEEEcccccccEEEcccccccHHHccccccccEEEEEccccccccccccHHHcccccEEEccccccccccccccEEEEEEccccccccccccccccccccEEEccccccccccccccccccccccEEEEEcccccEEEccccccccccccccEEEEEccccccEEccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccHHHEEcHcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHHHccccEEEEEcccccccccccccccEEEEEccccccccccccccccccEEEEEccccccccccHHHHHcccccEEEEEcccccccccccccccccccEEEEcccccccccccccccccEEEEEccccccccccHHcccccccEEEEccccccccccHHHHcccccccEEEEEcccccccccccccccHHHHHHHHHccEEEccccccccccccccHHHHHHcEEcccccccccccccccHHHHHHHHcccccccccccHcccccEEEEccccccccHHcccccccccccccEEEEccccccEEcccccccccccccccEEEEcccHcHHHHcccccccccccccccccEEEEEcccHHHcccccccHHHccccccEEEEcccccHcEcccccccccHHHcccccccccccccEEEccccccHHcccccccccHHcccccccHcccccccccccccccccccccccEEEEcccccHHHccHHccccccEEEEcc
Coil and Loop (DISEMBL)
MQSYEYSEDFLDWLLSNEEASHLFEKIVghsakksdfeTIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNqlsnsnprkiqgmdadLSSIELSYEFLKCKEVKSLFQLCgllkdgsriaVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLksasllfdgdsedhaKMHRIIHAIAVSIAAEKLLFNIQNVADLKEELdkideaptaisipfrgiyelperlGFLKLKLFLFFTenlslqipdpffegmtELRVLDltgfrfhslpsslgclinlrtlslenclVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTclklldlsncsklkeirpnVISNLTRLEElymgnsftqwkvegqsnaslgelkqlsrlttlevhipdaqvmpqdLVFVELERFRICIgdvwswsdgyetsktLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILnsdgrvgtfpLLESLFLHNLInlekvcdgkvrlneddksfsNLRIIKVegchrvkhlfpFSLVKNLLQLqkvkvtdctnlklivgkesensahkngsisgvyFRKLHFlklqhlpqltssgfdletptntqgsnpgiiaegdpkdftslfnervvfpslkklklsSINVEKIWLNSFSAIESWVVQKK
Flexible Loop (DISEMBL)
MQSYEYSEDFLDWLLSNEEASHLFEKIVghsakksdFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAvnqlsnsnprkiqGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEKLLFNIQNVADLKEELDKIdeaptaisipfrgIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLsncsklkeirpnVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDvwswsdgyetsktlklqlNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLivgkesensahkngSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWVVQKK
Low Complexity Region (SEG)
MQSYEYSEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEKLLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGflklklflffTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSlvknllqlqkvkvTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWVVQKK
Disordered region (IsUnstruct)
*******EDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAV****************DLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEKLLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGK*********GSISGVYFRKLHFLKLQHLPQLT**************************DFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWVV***
Disordered Region (DISOPRED)
******SEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSN*********DADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEKLLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP*VISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSW********TLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVG************ISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNT*G***GIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWV****
Disordered Region (DISEMBL)
********DFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEKLLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWVVQKK
Disordered Region (DISPRO)
****EYSEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEKLLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWVVQ**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQSYEYSEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEKLLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWVVQKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	679	2.2.26 [Sep-21-2011]
O81825	919	Probable disease resistan	yes	no	0.852	0.630	0.285	9e-47
Q9T048	985	Disease resistance protei	no	no	0.840	0.579	0.262	6e-41
Q42484	909	Disease resistance protei	no	no	0.749	0.559	0.263	4e-31
Q9LVT4	843	Probable disease resistan	no	no	0.471	0.379	0.296	9e-22
Q9C8T9	898	Putative disease resistan	no	no	0.536	0.405	0.264	7e-19
Q9FLB4	874	Putative disease resistan	no	no	0.413	0.321	0.285	4e-18
Q7XBQ9	970	Disease resistance protei	N/A	no	0.756	0.529	0.246	3e-17
Q9SI85	893	Probable disease resistan	no	no	0.764	0.581	0.233	1e-15
Q7XA42	979	Putative disease resistan	N/A	no	0.452	0.313	0.281	4e-15
Q8RXS5	888	Probable disease resistan	no	no	0.458	0.350	0.280	6e-15

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score =  189 bits (479), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 176/616 (28%), Positives = 286/616 (46%), Gaps = 37/616 (6%)

Query: 15  LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSP-RIWKDA 73
           L  +EA  LF   VG  A   + + I  ++  +C GLP+AI TI   L+ K    +WK  
Sbjct: 272 LQEKEAWELFCHNVGEVANSDNVKPIAKDVSHECCGLPLAIITIGRTLRGKPQVEVWKHT 331

Query: 74  VNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVM 133
           +N L  S P  I   +    +++LSY+FL+   +KS F  C L  +   I V +L+ Y +
Sbjct: 332 LNLLKRSAP-SIDTEEKIFGTLKLSYDFLQ-DNMKSCFLFCALFPEDYSIKVSELIMYWV 389

Query: 134 GLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEK--- 190
              LL      E   N   TL++ LK + LL DGDS D  KMH ++   A+   + +   
Sbjct: 390 AEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKMHDVVRDFAIWFMSSQGEG 449

Query: 191 ---LLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLS 245
              L+   + + +  +  DK   +   +S+    +  LP  +  G   L L L    ++ 
Sbjct: 450 FHSLVMAGRGLIEFPQ--DKFVSSVQRVSLMANKLERLPNNVIEGVETLVLLLQGNSHVK 507

Query: 246 LQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC-LVVDVAIIGDLKKL 304
            ++P+ F +    LR+LDL+G R  +LP S   L +LR+L L NC  + ++  +  L KL
Sbjct: 508 -EVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNLPSLESLVKL 566

Query: 305 EILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQW 364
           + L L  S+I +LPR +  L+ L+ + +SN  +L+ I    I  L+ LE L M  S   W
Sbjct: 567 QFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSSLEVLDMAGSAYSW 626

Query: 365 KVEG---QSNASLGELKQLSRLTTLEVHIPDAQVMPQ--DLVFVELERFRICIGDVWSWS 419
            ++G   +  A+L E+  L  L  L + + D        D +   L +F+     + S S
Sbjct: 627 GIKGEEREGQATLDEVTCLPHLQFLAIKLLDVLSFSYEFDSLTKRLTKFQFLFSPIRSVS 686

Query: 420 DGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAG----FKNVVHELDDEEGFAR 475
                   L +   N +    G   LL+    L L+   G    F+N+V +   +  F  
Sbjct: 687 PPGTGEGCLAISDVNVSNASIG--WLLQHVTSLDLNYCEGLNGMFENLVTK--SKSSFVA 742

Query: 476 LRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLR 535
           ++ L +H  P +      + ++  FP LE L L N +NLE + +    L         L+
Sbjct: 743 MKALSIHYFPSLSLASGCESQLDLFPNLEELSLDN-VNLESIGELNGFLG---MRLQKLK 798

Query: 536 IIKVEGCHRVKHLFPFSLVKNLL-QLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYF 594
           +++V GC ++K LF   ++   L  LQ++KV  C  L+ +    S        S+     
Sbjct: 799 LLQVSGCRQLKRLFSDQILAGTLPNLQEIKVVSCLRLEELFNFSSVPVDFCAESL----L 854

Query: 595 RKLHFLKLQHLPQLTS 610
            KL  +KL++LPQL S
Sbjct: 855 PKLTVIKLKYLPQLRS 870

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score =  169 bits (429), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 165/629 (26%), Positives = 294/629 (46%), Gaps = 58/629 (9%)

Query: 15  LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWKDA 73
           L  E+A  LF K  G   +      I   +  +CGGLP+AI T+  A++ K + ++W   
Sbjct: 302 LLEEDAWELFCKNAGDVVRSDHVRKIAKAVSQECGGLPLAIITVGTAMRGKKNVKLWNHV 361

Query: 74  VNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVM 133
           +++LS S P      +     ++LSY+FL+ K  K  F LC L  +   I V +++RY M
Sbjct: 362 LSKLSKSVPWIKSIEEKIFQPLKLSYDFLEDK-AKFCFLLCALFPEDYSIEVTEVVRYWM 420

Query: 134 GLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEK--- 190
               +    + E + N   T +++LK   LL DGD  D  KMH ++   A+ I +     
Sbjct: 421 AEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHDVVRDFAIWIMSSSQDD 480

Query: 191 ---LLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERLG--FLKLKLFLFFTENLS 245
              L+ +   + D+++  DK+  +   +S+    +  LP+ +    +K  + L     L 
Sbjct: 481 SHSLVMSGTGLQDIRQ--DKLAPSLRRVSLMNNKLESLPDLVEEFCVKTSVLLLQGNFLL 538

Query: 246 LQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL-VVDVAIIGDLKK 303
            ++P  F +    LR+L+L+G R  S PS SL  L +L +L L +C  +V +  +  L K
Sbjct: 539 KEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDCFKLVKLPSLETLAK 598

Query: 304 LEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363
           LE+L L  + I + PR + +L   + LDLS    L+ I   V+S L+ LE L M +S  +
Sbjct: 599 LELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSRLSSLETLDMTSSHYR 658

Query: 364 WKVEGQS---NASLGELKQLSRLTTLEVHIPDAQVM--PQDLVFVELERFRICIGDVWSW 418
           W V+G++    A++ E+  L RL  L + +  +  +   ++     L++F++ +G  +  
Sbjct: 659 WSVQGETQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWIKRLKKFQLVVGSRYIL 718

Query: 419 SDGYETSKTLKLQLNNSTY-LGYGMKMLLKRTEDLHLDELAGFKNVVHEL-DDEEGFARL 476
              ++  +     LN S   +G+    LL  T  L L+   G + ++ +L  D +GF  L
Sbjct: 719 RTRHDKRRLTISHLNVSQVSIGW----LLAYTTSLALNHCQGIEAMMKKLVSDNKGFKNL 774

Query: 477 RHLHVHNGPEILHILNSDGRVGT---------------FPLLESLFLHNLINLEKVCDGK 521
           + L + N      I+N++  V                  P LE L L   ++LE   + +
Sbjct: 775 KSLTIENV-----IINTNSWVEMVSTNTSKQSSDILDLLPNLEELHLRR-VDLETFSELQ 828

Query: 522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESEN 581
             L         L+II++  C +++ L        +  L++++++ C +L+         
Sbjct: 829 THLG---LKLETLKIIEITMCRKLRTLLDKRNFLTIPNLEEIEISYCDSLQ--------- 876

Query: 582 SAHKNGSISGVYFRKLHFLKLQHLPQLTS 610
           + H+       +   L  LKL++LP L S
Sbjct: 877 NLHEALLYHQPFVPNLRVLKLRNLPNLVS 905

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score =  136 bits (343), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 162/615 (26%), Positives = 271/615 (44%), Gaps = 106/615 (17%)

Query: 19  EASHLFEKIVGHSAKKSDFETIGVE-----IVAKCGGLPIAIKTIANALKNK-SPRIWKD 72
           E  H +E       +K   E+  +      IV+KCGGLP+A+ T+  A+ ++ +   W  
Sbjct: 311 EKKHAWELFCSKVWRKDLLESSSIRRLAEIIVSKCGGLPLALITLGGAMAHRETEEEWIH 370

Query: 73  AVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYV 132
           A   L+   P +++GM+   + ++ SY+ L+   ++S F  C L  +   I ++ L+ Y 
Sbjct: 371 ASEVLTRF-PAEMKGMNYVFALLKFSYDNLESDLLRSCFLYCALFPEEHSIEIEQLVEYW 429

Query: 133 MGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEKLL 192
           +G   LT++  +     + + LI +LK+A LL  GD +   KMH ++ + A+ +A+E+  
Sbjct: 430 VGEGFLTSSHGVNTIY-KGYFLIGDLKAACLLETGDEKTQVKMHNVVRSFALWMASEQGT 488

Query: 193 FNIQNVADLKEELDKIDEAPTA--------ISIPFRGIYELPERLGFLKLKLFLFFTENL 244
           +       L E      EAP A        IS+    I  LPE+L   KL   L   +N 
Sbjct: 489 YK---ELILVEPSMGHTEAPKAENWRQALVISLLDNRIQTLPEKLICPKLTT-LMLQQNS 544

Query: 245 SLQ-IPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKK 303
           SL+ IP  FF  M  LRVLDL+      +P S+  L+ L  LS+                
Sbjct: 545 SLKKIPTGFFMHMPVLRVLDLSFTSITEIPLSIKYLVELYHLSMSG-------------- 590

Query: 304 LEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363
                   + I  LP+E+G L  LK LDL     L+ I  + I  L++LE L +  S+  
Sbjct: 591 --------TKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSKLEVLNLYYSYAG 642

Query: 364 WKVE--GQSNA---SLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSW 418
           W+++  G+  A      +L+ L  LTTL + +                            
Sbjct: 643 WELQSFGEDEAEELGFADLEYLENLTTLGITVL--------------------------- 675

Query: 419 SDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFAR-LR 477
               ET KTL           +    L K  + LH++E      +   L       R LR
Sbjct: 676 --SLETLKTL-----------FEFGALHKHIQHLHVEECNEL--LYFNLPSLTNHGRNLR 720

Query: 478 HLHVHNGPEILHILN-SDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRI 536
            L + +  ++ +++  +D      P LE L LH+L NL +V    V          N+R 
Sbjct: 721 RLSIKSCHDLEYLVTPADFENDWLPSLEVLTLHSLHNLTRVWGNSV----SQDCLRNIRC 776

Query: 537 IKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISG-VYFR 595
           I +  C+++K++   S V+ L +L+ +++ DC  ++ ++      S H++ S+     F 
Sbjct: 777 INISHCNKLKNV---SWVQKLPKLEVIELFDCREIEELI------SEHESPSVEDPTLFP 827

Query: 596 KLHFLKLQHLPQLTS 610
            L  L+ + LP+L S
Sbjct: 828 SLKTLRTRDLPELNS 842

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT4|DRL37_ARATH Probable disease resistance protein At5g47250 OS=Arabidopsis thaliana GN=At5g47250 PE=2 SV=1

 Score =  105 bits (263), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 171/358 (47%), Gaps = 38/358 (10%)

Query: 7   SEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKS 66
           +ED     LS  +A  LF+  V H    ++   I  +IVAKC GLP+A++ I   + +KS
Sbjct: 305 NEDIEVQCLSENDAWDLFDMKV-HCDGLNEISDIAKKIVAKCCGLPLALEVIRKTMASKS 363

Query: 67  PRI-WKDAVNQLSNSNPRKIQGMDADLSSI-ELSYEFLKCKEVKSLFQLCGLLKDGSRIA 124
             I W+ A++ L  S   +++G +  +  + +LSY++LK K  K  F  C L      I 
Sbjct: 364 TVIQWRRALDTL-ESYRSEMKGTEKGIFQVLKLSYDYLKTKNAKC-FLYCALFPKAYYIK 421

Query: 125 VDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAV 184
            D+L+ Y +G   +   D  E A++R + +IDNL  A LL   +S     MH +I  +A+
Sbjct: 422 QDELVEYWIGEGFIDEKDGRERAKDRGYEIIDNLVGAGLLL--ESNKKVYMHDMIRDMAL 479

Query: 185 SIAAE---KLLFNIQNVADLKEELDKID-EAPTAISIPFRGIYELPERLGFLKLK--LFL 238
            I +E      + ++  A L +  D  D    T +S+    I  +P+   F      + L
Sbjct: 480 WIVSEFRDGERYVVKTDAGLSQLPDVTDWTTVTKMSLFNNEIKNIPDDPEFPDQTNLVTL 539

Query: 239 FFTENLSLQIPDPFFEGMTELRVLDLT-GFRFHSLPSSLGCLINLRTLSLENCLVVDVAI 297
           F   N  + I   FF  M+ L VLDL+  F+   LP  +  L++LR              
Sbjct: 540 FLQNNRLVDIVGKFFLVMSTLVVLDLSWNFQITELPKGISALVSLR-------------- 585

Query: 298 IGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355
                   +L+L  +SI+ LP  +G L+ L  L+L + S L+ +   +IS L +L+ L
Sbjct: 586 --------LLNLSGTSIKHLPEGLGVLSKLIHLNLESTSNLRSV--GLISELQKLQVL 633

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 188/412 (45%), Gaps = 48/412 (11%)

Query: 15  LSNEEASHLFEKIVGHSAKKSDFET--IGVEIVAKCGGLPIAIKTIANALKNK-SPRIWK 71
           L++ +A  LF+K VG     SD E   +   +  KC GLP+A+  ++  +  K + + W+
Sbjct: 309 LADNDAYDLFQKKVGQITLGSDPEIRELSRVVAKKCCGLPLALNVVSETMSCKRTVQEWR 368

Query: 72  DAVNQLSNSNPRKIQGMDAD-LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLR 130
            A+  L NS   K  GMD   L  ++ SY+ LK ++VK     C L  + ++I  ++L+ 
Sbjct: 369 HAIYVL-NSYAAKFSGMDDKILPLLKYSYDSLKGEDVKMCLLYCALFPEDAKIRKENLIE 427

Query: 131 YVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAK---MHRIIHAIAVSIA 187
           Y +   ++  ++ ++ A N+ + +I +L  ASLL +    D A    +H ++  +A+ IA
Sbjct: 428 YWICEEIIDGSEGIDKAENQGYEIIGSLVRASLLMEEVELDGANIVCLHDVVREMALWIA 487

Query: 188 A----EKLLFNIQNVADLKEELDKIDEAPTA--ISIPFRGIYELPERLGFLKLKLFLFFT 241
           +    +   F ++    L+E L K++       +S+    I  L  RL  ++L   L  +
Sbjct: 488 SDLGKQNEAFIVRASVGLREIL-KVENWNVVRRMSLMKNNIAHLDGRLDCMELTTLLLQS 546

Query: 242 ENLSLQIPDPFFEGMTELRVLDLTG-FRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGD 300
            +L  +I   FF  M +L VLDL+G +    LP+                       I +
Sbjct: 547 THLE-KISSEFFNSMPKLAVLDLSGNYYLSELPNG----------------------ISE 583

Query: 301 LKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360
           L  L+ L+L  + I  LP+ + +L  L  L L   S+L  +    IS L  L+ L +  S
Sbjct: 584 LVSLQYLNLSSTGIRHLPKGLQELKKLIHLYLERTSQLGSMVG--ISCLHNLKVLKLSGS 641

Query: 361 FTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICI 412
              W ++     ++ EL+ L  L  L   I D  +      F+   R   CI
Sbjct: 642 SYAWDLD-----TVKELEALEHLEVLTTTIDDCTLGTDQ--FLSSHRLMSCI 686

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 154/326 (47%), Gaps = 45/326 (13%)

Query: 40  IGVEIVAKCGGLPIAIKTIANAL-KNKSPRIWKDAVNQLSNSNPRKIQGMDADLSSI-EL 97
           +   I  KC GLP+A+  I   + + KS   W DAV   S        G++AD+ SI + 
Sbjct: 337 VAKSIARKCNGLPLALNVIGETMARKKSIEEWHDAVGVFS--------GIEADILSILKF 388

Query: 98  SYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDN 157
           SY+ LKC++ KS F    L  +   I  DDL+ Y +G  ++  +   +    + +T+I  
Sbjct: 389 SYDDLKCEKTKSCFLFSALFPEDYEIGKDDLIEYWVGQGIILGS---KGINYKGYTIIGT 445

Query: 158 LKSASLLFDGDSEDHAKMHRIIHAIAVSIAA------EKLLFNIQNVADLKEELDKIDE- 210
           L  A LL + ++++  KMH ++  +A+ I++      +K +  ++  A L+ ++ KI++ 
Sbjct: 446 LTRAYLLKESETKEKVKMHDVVREMALWISSGCGDQKQKNVLVVEANAQLR-DIPKIEDQ 504

Query: 211 -APTAISIPFRGIYELPERLGFLKLKLFL-------------------FFTENLSLQ--- 247
            A   +S+ +  I E  E L   KL+  L                       +LSL    
Sbjct: 505 KAVRRMSLIYNQIEEACESLHCPKLETLLLRDNRLRKISREFLSHVPILMVLDLSLNPNL 564

Query: 248 IPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEI 306
           I  P F  +  LR L+L+     SLP  L  L NL  L+LE+  ++  +  I DL  LE+
Sbjct: 565 IELPSFSPLYSLRFLNLSCTGITSLPDGLYALRNLLYLNLEHTYMLKRIYEIHDLPNLEV 624

Query: 307 LSLKHSSIEQLPREIGQLTCLKLLDL 332
           L L  S I+   + + Q+  +K L L
Sbjct: 625 LKLYASGIDITDKLVRQIQAMKHLYL 650

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 91.3 bits (225), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 155/628 (24%), Positives = 264/628 (42%), Gaps = 114/628 (18%)

Query: 1   MQSYEYSEDFLDWLLSNEEASHLF-EKIVGHSAK-KSDFETIGVEIVAKCGGLPIAIKTI 58
           +Q YE S       LS E+   LF ++  GH  +   +   IG EIV K GG+P+A KT+
Sbjct: 304 LQPYELSN------LSQEDCWLLFMQRAFGHQEEINPNLVAIGKEIVKKSGGVPLAAKTL 357

Query: 59  ANALK-NKSPRIWKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLL 117
              L   +  R W+   +    + P   Q   + L ++ LSY  L   ++K  F  C + 
Sbjct: 358 GGILCFKREERAWEHVRDSPIWNLP---QDESSILPALRLSYHQLPL-DLKQCFAYCAVF 413

Query: 118 KDGSRIAVDDLLRYVM--GLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKM 175
              +++  + L+   M  G  L      LE   + V   +        +   D + + KM
Sbjct: 414 PKDAKMEKEKLISLWMAHGFLLSKGNMELEDVGDEVWKELYLRSFFQEIEVKDGKTYFKM 473

Query: 176 HRIIHAIAVSIAAEKLLFNIQNVADLKEELDKIDEAPTAISIPFRGI---YELPERLGFL 232
           H +IH +A S      LF+    +    E++K       +SI F  +   Y LP    F+
Sbjct: 474 HDLIHDLATS------LFSANTSSSNIREINK-HSYTHMMSIGFAEVVFFYTLPPLEKFI 526

Query: 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC-- 290
            L++ L   ++   ++P    + +  LR L+L G    SLP  L  L NL+TL L+ C  
Sbjct: 527 SLRV-LNLGDSTFNKLPSSIGD-LVHLRYLNLYGSGMRSLPKQLCKLQNLQTLDLQYCTK 584

Query: 291 ---LVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLL----------------- 330
              L  + + +G L+ L  L     S+  +P  IG LTCLK L                 
Sbjct: 585 LCCLPKETSKLGSLRNL--LLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKKGYQLGELG 642

Query: 331 --------DLSNCSKLKEIRPNVISNLT---RLEELYMG-NSFTQWKVEGQSNASLGELK 378
                    +S+  ++K  +    +NL+    L  L M  N+F     E +    L  LK
Sbjct: 643 NLNLYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWNNFGPHIYESEEVKVLEALK 702

Query: 379 QLSRLTTLEV------HIPD--AQVMPQDLVFVELERFRIC-----IGDVWSWSDGYETS 425
             S LT+L++      H+P+     + +++V + +  FR C      GD+          
Sbjct: 703 PHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDL-------PCL 755

Query: 426 KTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485
           ++L+L   ++          ++  E++ +D  +GF   +        F  LR L + +  
Sbjct: 756 ESLELHWGSAD---------VEYVEEVDIDVHSGFPTRIR-------FPSLRKLDIWDFG 799

Query: 486 EILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCH-R 544
            +  +L  +G    FP+LE + +H    L         L+ + ++ ++LRI     C+ +
Sbjct: 800 SLKGLLKKEGE-EQFPVLEEMIIHECPFL--------TLSSNLRALTSLRI-----CYNK 845

Query: 545 VKHLFPFSLVKNLLQLQKVKVTDCTNLK 572
           V   FP  + KNL  L+ + ++ C NLK
Sbjct: 846 VATSFPEEMFKNLANLKYLTISRCNNLK 873

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score = 85.5 bits (210), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 143/613 (23%), Positives = 264/613 (43%), Gaps = 94/613 (15%)

Query: 20  ASHLFEKIVGHSAKKSD--FETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWKDAVNQ 76
           A  LF+K VG     SD     +   +  KC GLP+A+  I   +  K + + W++A++ 
Sbjct: 314 AFDLFQKKVGQKTLGSDPGIPQLARIVAKKCCGLPLALNVIGETMSCKRTIQEWRNAIHV 373

Query: 77  LSNSNPRKIQGM-DADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGL 135
           L NS   +  GM D  L  ++ SY+ LK + VKS    C L  + ++I  +DL+ + +  
Sbjct: 374 L-NSYAAEFIGMEDKILPLLKYSYDNLKGEHVKSSLLYCALYPEDAKIRKEDLIEHWICE 432

Query: 136 RLLTNADTLEAARNRVHTLIDNLKSASLLF---DGDSEDHAKMHRIIHAIAVSIAAEKLL 192
            ++  ++ +E A ++ + +I +L  ASLL    D   +    MH ++  +A+ IA+E   
Sbjct: 433 EIIDGSEGIEKAEDKGYDIIGSLVRASLLMECVDLKGKSSVIMHDVVREMALWIASE--- 489

Query: 193 FNIQNVADLKEELDKIDEAPTA--------ISIPFRGIYELPERLGFLKL-KLFLFFTEN 243
             IQ  A +      + E P          +S+    I+ L      ++L  L L   E 
Sbjct: 490 LGIQKEAFIVRAGVGVREIPKVKNWNVVRRMSLMGNKIHHLVGSYECMELTTLLLGEGEY 549

Query: 244 LSL-------QIPDPFFEGMTELRVLDLTGFR-FHSLPSSLGCLINLRTLSLENCLVVDV 295
            S+        I   FF  M +L VLDL+  +    LP  +  L++L+            
Sbjct: 550 GSIWRWSEIKTISSEFFNCMPKLAVLDLSHNQSLFELPEEISNLVSLK------------ 597

Query: 296 AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355
                      L+L H+ I  L + I +L  +  L+L + SKL+ I  + IS+L  L+ L
Sbjct: 598 ----------YLNLSHTGIRHLSKGIQELKKIIHLNLEHTSKLESI--DGISSLHNLKVL 645

Query: 356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDV 415
            +  S   W         L  +K+L  L  LE  I    + P+   F+   R        
Sbjct: 646 KLYGSRLPW--------DLNTVKELETLEHLE--ILTTTIDPRAKQFLSSHRL------- 688

Query: 416 WSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEE---- 471
                    S++  LQ+  S       ++    +  +  D+L  F+ +   + + +    
Sbjct: 689 --------MSRSRLLQIFGSNIFSPDRQL---ESLSVSTDKLREFEIMCCSISEIKMGGI 737

Query: 472 -GFARLRHLHVHN--GPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDD 528
             F  L  + ++N  G   L  L    ++ +  ++++  L ++IN EK C+G+   +   
Sbjct: 738 CNFLSLVDVTIYNCEGLRELTFLIFAPKLRSLSVVDAKDLEDIINEEKACEGE---DSGI 794

Query: 529 KSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGS 588
             F  L+ + ++   ++K+++   L    L L+K+ + +C NL+ +          +NG 
Sbjct: 795 VPFPELKYLNLDDLPKLKNIYRRPL--PFLCLEKITIGECPNLRKLPLDSRSGKQGENGC 852

Query: 589 ISGVYFRKLHFLK 601
           I  ++++   +LK
Sbjct: 853 I--IHYKDSRWLK 863

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 84.0 bits (206), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 158/345 (45%), Gaps = 38/345 (11%)

Query: 1   MQSYEYSEDFLDWLLSNEEASHLF-EKIVGHSAK-KSDFETIGVEIVAKCGGLPIAIKTI 58
           +Q YE S       LS E+   LF ++  GH  +   +   IG EIV KCGG+P+A KT+
Sbjct: 303 LQPYELSN------LSPEDCWFLFMQRAFGHQEEINPNLMAIGKEIVKKCGGVPLAAKTL 356

Query: 59  ANALK-NKSPRIWKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLL 117
              L+  +  R W+   +    + P   Q   + L ++ LSY  L   +++  F  C + 
Sbjct: 357 GGILRFKREEREWEHVRDSPIWNLP---QDESSILPALRLSYHHLPL-DLRQCFVYCAVF 412

Query: 118 KDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSED---HAK 174
              +++A ++L+ + M    L +   LE   +  + + + L   S   + + E    + K
Sbjct: 413 PKDTKMAKENLIAFWMAHGFLLSKGNLE-LEDVGNEVWNELYLRSFFQEIEVESGKTYFK 471

Query: 175 MHRIIHAIAVSIAAEKLLFNIQNVADLKEELDKIDEAPTAISIPFRGI---YELPERLGF 231
           MH +IH +A S+ +     +  N+ ++    D        +SI F  +   Y       F
Sbjct: 472 MHDLIHDLATSLFSANT--SSSNIREINANYDGY-----MMSIGFAEVVSSYSPSLLQKF 524

Query: 232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTG-FRFHSLPSSLGCLINLRTLSLE-- 288
           + L++      NL+ Q+P    + +  LR LDL+G FR  +LP  L  L NL+TL L   
Sbjct: 525 VSLRVLNLRNSNLN-QLPSSIGD-LVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHYC 582

Query: 289 ---NCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLL 330
              +CL    + +G L+    L L   S+   P  IG LTCLK L
Sbjct: 583 DSLSCLPKQTSKLGSLRN---LLLDGCSLTSTPPRIGLLTCLKSL 624

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score = 83.2 bits (204), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 167/331 (50%), Gaps = 20/331 (6%)

Query: 15  LSNEEASHLFEKIVGHSAKKS--DFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWK 71
           L+ ++A  LF K VG     S  +  T+   +  KC GLP+A+  I   +  K + + W+
Sbjct: 311 LAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYKRTVQEWR 370

Query: 72  DAVNQLSNSNPRKIQGM-DADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLR 130
            A++ L++S   +  GM D  L  ++ SY+ LK +++K  FQ C L  +   I  +DL+ 
Sbjct: 371 SAIDVLTSSAA-EFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIEKNDLVD 429

Query: 131 YVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAA-- 188
           Y +G   +        A N+ + +I  L  + LL + ++++  KMH ++  +A+ IA+  
Sbjct: 430 YWIGEGFIDRNKG--KAENQGYEIIGILVRSCLLME-ENQETVKMHDVVREMALWIASDF 486

Query: 189 --EKLLFNIQNVADLKEE-LDKIDEAPTA--ISIPFRGIYELPERLGFLKLKLFLFFTEN 243
             +K  F +Q  A L+   + +I++   A  +S+ F  I  + +     +L + L   +N
Sbjct: 487 GKQKENFIVQ--AGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQL-ITLLLRKN 543

Query: 244 LSLQIPDPFFEGMTELRVLDLTGFR-FHSLPSSLGCLINLRTLSLENCLV-VDVAIIGDL 301
               I   FF  M  L VLDL+  R    LP+ +   ++L+ LSL    + +  A + +L
Sbjct: 544 FLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGLVEL 603

Query: 302 KKLEILSLKHSSIEQLPREIGQLTCLKLLDL 332
           +KL  L+L+++ + +    I  LT LK+L L
Sbjct: 604 RKLLYLNLEYTRMVESICGISGLTSLKVLRL 634

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	679
255563252	1603	Disease resistance protein RPS5, putativ	0.954	0.404	0.483	1e-149
296087872	1152	unnamed protein product [Vitis vinifera]	0.914	0.539	0.464	1e-148
359488027	1520	PREDICTED: disease resistance protein At	0.904	0.403	0.466	1e-147
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.951	0.491	0.460	1e-147
224111284	1340	cc-nbs-lrr resistance protein [Populus t	0.946	0.479	0.457	1e-138
224143316	1337	cc-nbs-lrr resistance protein [Populus t	0.948	0.481	0.453	1e-136
147865073	1694	hypothetical protein VITISV_021876 [Viti	0.892	0.357	0.458	1e-134
359488095	1347	PREDICTED: probable disease resistance p	0.891	0.449	0.450	1e-132
359488288	1340	PREDICTED: LOW QUALITY PROTEIN: probable	0.893	0.452	0.446	1e-131
224083434	1144	cc-nbs-lrr resistance protein [Populus t	0.957	0.568	0.420	1e-130

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 327/677 (48%), Positives = 434/677 (64%), Gaps = 29/677 (4%)

Query: 14  LLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDA 73
           +L  EEA  LFE +VG   K  +F++   E+  KC GLP+ I TIA ALKNK   +WKDA
Sbjct: 309 VLQEEEALSLFEMMVG-DVKGGEFQSAASEVTKKCAGLPVLIVTIARALKNKDLYVWKDA 367

Query: 74  VNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVM 133
           V QLS  +  +IQ  +   S++ELSY  L   EVKSLF LCGLL   S IA+ DLL Y  
Sbjct: 368 VKQLSRCDNEEIQ--EKVYSALELSYNHLIGAEVKSLFLLCGLLGK-SDIAILDLLMYST 424

Query: 134 GLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAE-KLL 192
           GL L    DTL  ARNRVH LI +LK+A LL D D +   K+H ++  +A+SIA+  + L
Sbjct: 425 GLGLFKGIDTLGDARNRVHKLISDLKAACLLLDSDIKGRVKIHDVVRDVAISIASRMQHL 484

Query: 193 FNIQNVADLKEELDK-IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDP 251
           F ++N A LKE  +K + ++ T IS+P+  I+ LPE L   +L+LFL FT+++SL++PD 
Sbjct: 485 FTVRNGALLKEWPNKDVCKSCTRISLPYNDIHGLPEVLECPELELFLLFTQDISLKVPDL 544

Query: 252 FFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKH 311
            FE    LRVL+ TG  F SLP SLG L NL TL L+ C + DVAIIG+L  L ILS KH
Sbjct: 545 CFELTKNLRVLNFTGMHFSSLPPSLGFLKNLFTLCLDWCALRDVAIIGELTGLTILSFKH 604

Query: 312 SSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG--- 368
           S I +LPREI QLT LK LDLS+C KLK I   +IS LT+LEELYM NSF  W V+G   
Sbjct: 605 SDIVELPREIRQLTKLKFLDLSHCLKLKVIPAKIISELTQLEELYMNNSFDLWDVQGINN 664

Query: 369 QSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTL 428
           Q NASL EL+ L  LTTLE+ + DA+++P+DL F +LERFRI IGDVWS +  Y TS+TL
Sbjct: 665 QRNASLAELECLPYLTTLEICVLDAKILPKDLFFRKLERFRIFIGDVWSGTGDYGTSRTL 724

Query: 429 KLQLNNST-YLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEI 487
           KL+LN S+ +L +G+ +LL+ TEDL+L E+ G K+V+++LD  +GF +L+HL V N PEI
Sbjct: 725 KLKLNTSSIHLEHGLSILLEVTEDLYLAEVKGIKSVLYDLDS-QGFTQLKHLDVQNDPEI 783

Query: 488 LHILNSDGR--VGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRV 545
            +I++ + R     FP+LESL+L NL++LEK+C GK+       SFS LR + V  C R+
Sbjct: 784 QYIIDPNRRSPCNAFPILESLYLDNLMSLEKICCGKLTTG----SFSKLRSLTVVKCDRL 839

Query: 546 KHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHL 605
           K+LF FS+++ LLQLQ++KV DC NL+ IV   SE++   +     V   +L  L L+ L
Sbjct: 840 KNLFSFSMMRCLLQLQQMKVVDCANLEEIVACGSEDT---DNDYEAVKLTQLCSLTLKRL 896

Query: 606 PQLTS---------SGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLS 656
           P   S             ++    T      I  +G+  D   LFNE   FP+L+ L+LS
Sbjct: 897 PMFKSFCSKKKVSPISLRVQKQLTTDTGLKEIAPKGELGDPLPLFNEMFCFPNLENLELS 956

Query: 657 SINVEKIWLNSFSAIES 673
           SI  EKI  +  SAI S
Sbjct: 957 SIACEKICDDQLSAISS 973

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087872|emb|CBI35155.3| unnamed protein product [Vitis vinifera]

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 304/655 (46%), Positives = 433/655 (66%), Gaps = 34/655 (5%)

Query: 15  LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAV 74
           L  EEA  LF+K+ G S ++ D ++I +++  +C GLPIAI T+A ALKNK   IW+DA+
Sbjct: 128 LQEEEALILFKKMAGDSIEEPDLQSIAIDVAKECAGLPIAIVTVAKALKNKGLSIWEDAL 187

Query: 75  NQLSNSNPRKIQGMDADL-SSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVM 133
            QL  S P  I+GMDA + S++ELSY+ L+  EVKSLF LCGL+ +  +I +DDLL+Y M
Sbjct: 188 RQLKRSIPTNIKGMDAMVYSTLELSYKHLEGDEVKSLFLLCGLMSN--KIYIDDLLKYGM 245

Query: 134 GLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEKLLF 193
           GLRL    +TLE A+NR+ TL+D+LK++ LL D       +MH ++  +A++I ++    
Sbjct: 246 GLRLFQGTNTLEEAKNRIDTLVDSLKASKLLLDTGHNSFVRMHDVVRDVAIAIVSK---- 301

Query: 194 NIQNVADLKE----ELDKIDEAPTA--ISIPFRGIYELPERLGFLKLKLFLFF-TENLSL 246
            +  V  L+E    E  K+DE  T   +S+ +  I ELP  L   +L+LFLF+ T +  L
Sbjct: 302 -VHRVFSLREDELVEWPKMDELQTCTKMSLAYNDICELPIELVCPELELFLFYHTIDYHL 360

Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEI 306
           +IP+ FFE M +L+VLDL+   F SLPSSL CL NLRTLSL  C + D++II +LKKLE 
Sbjct: 361 KIPETFFEEMKKLKVLDLSNMHFTSLPSSLRCLTNLRTLSLNWCKLGDISIIVELKKLEF 420

Query: 307 LSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366
            S   S+IE+LPREI QLT L+L DL +CSKL+EI PNVIS+L++LE L M NSFT W+V
Sbjct: 421 FSFMGSNIEKLPREIAQLTHLRLFDLRDCSKLREIPPNVISSLSKLENLCMENSFTLWEV 480

Query: 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSK 426
           EG+SNAS+ E K L  LTTL++ IPDA+++  D++F +L R+RI IGDVWSW     T+K
Sbjct: 481 EGKSNASIAEFKYLPYLTTLDIQIPDAELLLTDVLFEKLIRYRIFIGDVWSWDKNCPTTK 540

Query: 427 TLKL-QLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485
           TLKL +L+ S  L  G+ +LLK  +DLHL EL+G  NV  +L D EGF +L+ LHV   P
Sbjct: 541 TLKLNKLDTSLRLADGISLLLKGAKDLHLRELSGAANVFPKL-DREGFLQLKCLHVERSP 599

Query: 486 EILHILNSDGRV---GTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGC 542
           E+ HI+NS   +     FP+LESLFL+ LINL++VC G++ +     SFS LRI+KVE C
Sbjct: 600 EMQHIMNSMDPILSPCAFPVLESLFLNQLINLQEVCHGQLLVG----SFSYLRIVKVEYC 655

Query: 543 HRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKL 602
             +K LF  S+ + L +L+K+++T C N+  +V +  E+    + ++  + F +L +L L
Sbjct: 656 DGLKFLFSMSMARGLSRLEKIEITRCKNMYKMVAQGKEDG---DDAVDAILFAELRYLTL 712

Query: 603 QHLPQLTSSGFDLETPTNTQGSNP-------GIIAEGDPKDFTSLFNERVVFPSL 650
           QHLP+L +   + +T  +T   +P       GI +EG+  + TS+FN+ V   S+
Sbjct: 713 QHLPKLRNFCLEGKTMPSTTKRSPTTNVRFNGICSEGELDNQTSVFNQLVCHSSI 767

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488027|ref|XP_002269288.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  530 bits (1365), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 302/648 (46%), Positives = 430/648 (66%), Gaps = 34/648 (5%)

Query: 15  LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAV 74
           L  EEA  LF+K+ G S ++ D ++I +++  +C GLPIAI T+A ALKNK   IW+DA+
Sbjct: 308 LQEEEALILFKKMAGDSIEEPDLQSIAIDVAKECAGLPIAIVTVAKALKNKGLSIWEDAL 367

Query: 75  NQLSNSNPRKIQGMDADL-SSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVM 133
            QL  S P  I+GMDA + S++ELSY+ L+  EVKSLF LCGL+ +  +I +DDLL+Y M
Sbjct: 368 RQLKRSIPTNIKGMDAMVYSTLELSYKHLEGDEVKSLFLLCGLMSN--KIYIDDLLKYGM 425

Query: 134 GLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEKLLF 193
           GLRL    +TLE A+NR+ TL+D+LK++ LL D       +MH ++  +A++I ++    
Sbjct: 426 GLRLFQGTNTLEEAKNRIDTLVDSLKASKLLLDTGHNSFVRMHDVVRDVAIAIVSK---- 481

Query: 194 NIQNVADLKE----ELDKIDEAPTA--ISIPFRGIYELPERLGFLKLKLFLFF-TENLSL 246
            +  V  L+E    E  K+DE  T   +S+ +  I ELP  L   +L+LFLF+ T +  L
Sbjct: 482 -VHRVFSLREDELVEWPKMDELQTCTKMSLAYNDICELPIELVCPELELFLFYHTIDYHL 540

Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEI 306
           +IP+ FFE M +L+VLDL+   F SLPSSL CL NLRTLSL  C + D++II +LKKLE 
Sbjct: 541 KIPETFFEEMKKLKVLDLSNMHFTSLPSSLRCLTNLRTLSLNWCKLGDISIIVELKKLEF 600

Query: 307 LSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366
            S   S+IE+LPREI QLT L+L DL +CSKL+EI PNVIS+L++LE L M NSFT W+V
Sbjct: 601 FSFMGSNIEKLPREIAQLTHLRLFDLRDCSKLREIPPNVISSLSKLENLCMENSFTLWEV 660

Query: 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSK 426
           EG+SNAS+ E K L  LTTL++ IPDA+++  D++F +L R+RI IGDVWSW     T+K
Sbjct: 661 EGKSNASIAEFKYLPYLTTLDIQIPDAELLLTDVLFEKLIRYRIFIGDVWSWDKNCPTTK 720

Query: 427 TLKL-QLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485
           TLKL +L+ S  L  G+ +LLK  +DLHL EL+G  NV  +L D EGF +L+ LHV   P
Sbjct: 721 TLKLNKLDTSLRLADGISLLLKGAKDLHLRELSGAANVFPKL-DREGFLQLKCLHVERSP 779

Query: 486 EILHILNSDGRV---GTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGC 542
           E+ HI+NS   +     FP+LESLFL+ LINL++VC G++ +     SFS LRI+KVE C
Sbjct: 780 EMQHIMNSMDPILSPCAFPVLESLFLNQLINLQEVCHGQLLVG----SFSYLRIVKVEYC 835

Query: 543 HRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKL 602
             +K LF  S+ + L +L+K+++T C N+  +V +  E+    + ++  + F +L +L L
Sbjct: 836 DGLKFLFSMSMARGLSRLEKIEITRCKNMYKMVAQGKEDG---DDAVDAILFAELRYLTL 892

Query: 603 QHLPQLTSSGFDLETPTNTQGSNP-------GIIAEGDPKDFTSLFNE 643
           QHLP+L +   + +T  +T   +P       GI +EG+  + TS+FN+
Sbjct: 893 QHLPKLRNFCLEGKTMPSTTKRSPTTNVRFNGICSEGELDNQTSVFNQ 940

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 312/677 (46%), Positives = 428/677 (63%), Gaps = 31/677 (4%)

Query: 7   SEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKS 66
           + +F   +L   EA +LFEK+VG + KK     +  E+  +C GLPI + T+A ALKNK 
Sbjct: 295 NRNFPIQVLPASEAWNLFEKMVGVAVKKHSVRLVAAEVARRCAGLPILLATVARALKNKD 354

Query: 67  PRIWKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVD 126
              WK A+ QL+  +   I   D     +ELSY+ L+  E+KSLF LCG L+  + I + 
Sbjct: 355 LYAWKKALKQLTRFDKDDID--DQVYLGLELSYKSLRGDEIKSLFLLCGQLRSNN-ILIS 411

Query: 127 DLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSI 186
           DLLRY +GL L     TLE  RN + TL+D LK++ LL +GD +   KMH ++H+ A+S+
Sbjct: 412 DLLRYGIGLDLFKGCSTLEETRNSLLTLVDELKASCLLLEGDKDGSVKMHDVVHSFAISV 471

Query: 187 AAEKLLFNIQNVADLKEELDKID--EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENL 244
           A      ++  VAD  +E    D  +  TAIS+PFR I +LP  L    L  FL   ++ 
Sbjct: 472 ALRD--HHVLTVADEFKEWPANDVLQQYTAISLPFRKIPDLPAILECPNLNSFLLLNKDP 529

Query: 245 SLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKL 304
           SLQIPD FF  M EL++LDLT      LPSSL  L NL+TL L++C++ D++IIG+L KL
Sbjct: 530 SLQIPDSFFREMKELKILDLTEVNLSPLPSSLQFLENLQTLCLDHCVLEDISIIGELNKL 589

Query: 305 EILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQW 364
           ++LSL  S+I +LPREIG++T L+LLDLSNC +L+ I PN +S+LTRLE+LYMGNSF +W
Sbjct: 590 KVLSLMSSNIVRLPREIGKVTRLQLLDLSNCERLEVISPNALSSLTRLEDLYMGNSFVKW 649

Query: 365 KVEGQS----NASLGELKQLSRLTTLEVHIPDAQVMPQDLV--FVELERFRICIGDVWSW 418
           + EG S    NA L ELK LS L+TL + I DA  MP+DL   F  LERFRI IGD W W
Sbjct: 650 ETEGSSSQRNNACLSELKHLSNLSTLHMQITDADNMPKDLFSSFQNLERFRIFIGDGWDW 709

Query: 419 SDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRH 478
           S    TS+TLKL+LN    L  G+  LLK TE+LHL EL G K+++++LD  EGF +LRH
Sbjct: 710 SVKDATSRTLKLKLNTVIQLEEGVNTLLKITEELHLQELNGVKSILNDLDG-EGFPQLRH 768

Query: 479 LHVHNGPEILHILNS--DGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRI 536
           LHV N P + +I+NS   G    F  L+SLFL NL NLEK+C G++      +S  NLRI
Sbjct: 769 LHVQNCPGVQYIINSIRMGPRTAFLNLDSLFLENLDNLEKICHGQLMA----ESLGNLRI 824

Query: 537 IKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRK 596
           +KVE CHR+K+LF  S+ + L++L+++ + DC  ++ +V +ESEN A     I  + F +
Sbjct: 825 LKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIMEEVVAEESENDAADGEPI--IEFTQ 882

Query: 597 LHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFT---------SLFNERVVF 647
           L  L LQ LPQ TS   ++E  +++Q     + +E   K+           SLFN +++F
Sbjct: 883 LRRLTLQCLPQFTSFHSNVEESSDSQRRQKLLASEARSKEIVAGNELGTSMSLFNTKILF 942

Query: 648 PSLKKLKLSSINVEKIW 664
           P+L+ LKLSSI VEKIW
Sbjct: 943 PNLEDLKLSSIKVEKIW 959

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 307/671 (45%), Positives = 421/671 (62%), Gaps = 28/671 (4%)

Query: 7   SEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKS 66
           + +F   +L   EA + FEK+VG + K    + +  E+  +C GLPI + T+A ALKN+ 
Sbjct: 295 NRNFQVQVLPVREAWNFFEKMVGVTVKNPSVQPVAAEVAKRCAGLPILLATVARALKNED 354

Query: 67  PRIWKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCG--LLKDGSRIA 124
              WKDA+ QL+  +  +I   +   S +ELSY+ L+  E+KSLF LCG  L  D S   
Sbjct: 355 LYAWKDALKQLTRFDKDEID--NQVYSCLELSYKALRGDEIKSLFLLCGQFLTYDSS--- 409

Query: 125 VDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAV 184
           + DLL+Y +GL L     TLE ARNR+ TL+D LK++ LL +GD +   KMH ++ + A 
Sbjct: 410 ISDLLKYAIGLDLFKGRSTLEEARNRLRTLVDELKASCLLLEGDKDGRVKMHDVVQSFAF 469

Query: 185 SIAAEKLLFNIQNVADLKEELDKID--EAPTAISIPFRGIYELPERLGFLKLKLFLFFTE 242
           S+A+     ++  VAD  +E    D  +  TAIS+P+R I +LP  L    L  F+   +
Sbjct: 470 SVASRD--HHVLIVADEFKEWPTSDVLQQYTAISLPYRKIPDLPAILECPNLNSFILLNK 527

Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLK 302
           + SLQIPD FF  M EL+VLDLT      LPSSL  L NL+TL L+ C++ D++I+G+LK
Sbjct: 528 DPSLQIPDNFFREMKELKVLDLTRVNLSPLPSSLQFLENLQTLCLDGCVLEDISIVGELK 587

Query: 303 KLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362
           KL++LSL  S I  LPREIG+LT L LLDLSNC +L+ I PNV+S+LTRLEELYMGNSF 
Sbjct: 588 KLKVLSLISSDIVCLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLTRLEELYMGNSFV 647

Query: 363 QWKVEGQS----NASLGELKQLSRLTTLEVHIPDAQVMPQDLVFV--ELERFRICIGDVW 416
           +W+ EG S    NA L ELK+LS L TL + I DA  M +DL F+  +LERFRI IGD W
Sbjct: 648 KWETEGSSSQRNNACLSELKRLSNLITLHMQITDADNMLKDLSFLFQKLERFRIFIGDGW 707

Query: 417 SWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARL 476
            WS  Y TS+TLKL+LN    L   +  LLK TE+LHL EL G K+++++LD E+ F RL
Sbjct: 708 DWSVKYATSRTLKLKLNTVIQLEEWVNTLLKSTEELHLQELKGVKSILNDLDGED-FPRL 766

Query: 477 RHLHVHNGPEILHILNS--DGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNL 534
           +HLHV N P + +I+NS   G    F  L+SLFL NL NLEK+C G++      +S   L
Sbjct: 767 KHLHVQNCPGVQYIINSIRMGPRTAFLNLDSLFLENLDNLEKICHGQLMA----ESLGKL 822

Query: 535 RIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYF 594
           RI+KVE CHR+K+LF  S+ + L++L+++ + DC  ++ +V +ESEN       I    F
Sbjct: 823 RILKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIMEEVVAEESENDTADGEPIE---F 879

Query: 595 RKLHFLKLQHLPQLTSSGFDLETP-TNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKL 653
            +L  L LQ LPQ TS   +       +   +  I+A  +     SLFN +++FP+L+ L
Sbjct: 880 AQLRRLTLQCLPQFTSFHSNRRQKLLASDVRSKEIVAGNELGTSMSLFNTKILFPNLEDL 939

Query: 654 KLSSINVEKIW 664
           KLSSI VEKIW
Sbjct: 940 KLSSIKVEKIW 950

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143316|ref|XP_002336027.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222838884|gb|EEE77235.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 304/670 (45%), Positives = 421/670 (62%), Gaps = 26/670 (3%)

Query: 7   SEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKS 66
           + +F   +L   EA + FEK+VG + K    + +  E+  +C GLPI + T+A ALKN+ 
Sbjct: 295 NRNFQIQILPVREAWNFFEKMVGVTVKNPSVQLVAAEVAKRCAGLPILLATVARALKNED 354

Query: 67  PRIWKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVD 126
              WK+A+ QL+  +   I       S +ELSY+ L+  E+KSLF LCG +     + + 
Sbjct: 355 LYAWKEALTQLTRFDKDDID--KTAYSCLELSYKALRDDEIKSLFLLCGQILTYDAL-IS 411

Query: 127 DLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSI 186
           DLL+Y +GL L     T E ARNR+HTL+D LK++ LL +GD++   KMH ++ + A+S+
Sbjct: 412 DLLKYAIGLDLFKGRSTSEEARNRLHTLVDELKASCLLLEGDNDGSVKMHDVVRSFAISV 471

Query: 187 AAEKLLFNIQNVADLKEELDKID--EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENL 244
           A      ++  VAD  +E    D  +  TAIS+PFR I +LP  L    L  FL  + + 
Sbjct: 472 ALRD--HHVLIVADEFKEWPTNDVLQQYTAISLPFRKIPDLPAILECPNLNSFLLLSTDP 529

Query: 245 SLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKL 304
           SLQIP+ FF  M EL+VLDLTG     LPSSL  L NL+TL L+ C++ D++I+G+LKKL
Sbjct: 530 SLQIPENFFREMKELKVLDLTGVNLSPLPSSLQFLENLQTLCLDFCVLEDISIVGELKKL 589

Query: 305 EILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQW 364
           ++LSL  S I  LPREIG+LT L LLDLSNC +L+ I PNV+S+LTRLEELYMGNSF +W
Sbjct: 590 KVLSLMGSDIVCLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLTRLEELYMGNSFLKW 649

Query: 365 KVEGQS----NASLGELKQLSRLTTLEVHIPDAQVMPQD--LVFVELERFRICIGDVWSW 418
           + EG S    +A L ELK L+ L TL++ I DA  MP+D  L F +LERFRI IGD W W
Sbjct: 650 EAEGPSSERNSACLSELKLLANLITLDMQITDADHMPKDLFLCFQKLERFRIFIGDGWDW 709

Query: 419 SDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRH 478
           S  Y TS+TLKL+LN    L   +  LLK TE+LHL EL G K+++++L DEEGF +L+ 
Sbjct: 710 SVKYATSRTLKLKLNTVIQLEERVNTLLKITEELHLQELNGVKSILNDL-DEEGFCQLKD 768

Query: 479 LHVHNGPEILHILNSDGRVG---TFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLR 535
           LHV N P + +I+NS  R+G    F  L+SLFL NL NLEK+C G++      +S  NLR
Sbjct: 769 LHVQNCPGVQYIINS-MRMGPRTAFLNLDSLFLENLDNLEKICHGQLMA----ESLGNLR 823

Query: 536 IIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFR 595
           I+KVE CHR+K+LF  S+ + +++L+++ + DC  ++ +V +ESEN       I    F 
Sbjct: 824 ILKVESCHRLKNLFSVSIARRVVRLEEITIIDCKIMEEVVAEESENDTADGEPIE---FT 880

Query: 596 KLHFLKLQHLPQLTSSGFDLETP-TNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLK 654
           +L  L LQ LPQ TS   +       +   +  I+A  +     SLFN +++FP L+ L 
Sbjct: 881 QLRRLTLQCLPQFTSFHSNRRQKLLASDVRSKEIVAGNELGTSMSLFNTKILFPKLEDLM 940

Query: 655 LSSINVEKIW 664
           LSSI VEKIW
Sbjct: 941 LSSIKVEKIW 950

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 285/622 (45%), Positives = 404/622 (64%), Gaps = 16/622 (2%)

Query: 8   EDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSP 67
           +DF    L  +E   LF+   G S +  + + I V++  +C GLPIAI T+A ALKNK+ 
Sbjct: 298 KDFRVQHLQEDETWILFKNTAGDSIENPELQPIAVDVAKECAGLPIAIVTVAKALKNKNV 357

Query: 68  RIWKDAVNQLSNSNPRKIQGMDADL-SSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVD 126
            IWKDA+ QL++     I GM+  + SS++LSYE L+  EVKSLF LCGL  +   I + 
Sbjct: 358 SIWKDALQQLNSQTSTNITGMETKVYSSLKLSYEHLEGDEVKSLFLLCGLFSN--YIYIR 415

Query: 127 DLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSI 186
           DLL+Y MGLRL    +TLE A+NR+ TL+DNLKS++LL +       +MH ++ ++A+ I
Sbjct: 416 DLLKYGMGLRLFQGTNTLEEAKNRIDTLVDNLKSSNLLLETGHNAVVRMHDVVRSVALDI 475

Query: 187 AA-EKLLFNIQNVADLKEELDKIDEAPTAISIPFR--GIYELPERLGFLKLKLFLF-FTE 242
           ++ +  +F +Q      E+  +IDE    I +      I+ELPE L   KLKLF+     
Sbjct: 476 SSKDHHVFTLQQTTGRVEKWPRIDELQKVIWVNQDECDIHELPEGLVCPKLKLFICCLKT 535

Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLK 302
           N +++IP+ FFEGM +L+VLD T     SLPSSL CL NL+TL L  C + D+ II +LK
Sbjct: 536 NSAVKIPNTFFEGMKQLQVLDFTQMHLPSLPSSLQCLANLQTLLLYGCKLGDIGIITELK 595

Query: 303 KLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362
           KLEILSL  S IEQLPREI QLT L+LLDLS+ S +K I   VIS+L++LE+L M NSFT
Sbjct: 596 KLEILSLIDSDIEQLPREIAQLTHLRLLDLSDSSTIKVIPSGVISSLSQLEDLCMENSFT 655

Query: 363 QWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGY 422
           QW+ EG+SNA L ELK LS LT+L++ IPDA+++P+D+VF  L R+RI +GDVW W + Y
Sbjct: 656 QWEGEGKSNACLAELKHLSHLTSLDIQIPDAKLLPKDVVFENLVRYRIFVGDVWIWEENY 715

Query: 423 ETSKTLKL-QLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHV 481
           +T++TLKL + + S +L  G+  LLK TEDLHL EL G  NV+ +LD  EGF +L+HL+V
Sbjct: 716 KTNRTLKLKKFDTSLHLVDGISKLLKITEDLHLRELCGGTNVLSKLDG-EGFFKLKHLNV 774

Query: 482 HNGPEILHILNS---DGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDK-SFSNLRII 537
            + PEI +I+NS       G FP++E+L L+ LINL++VC G+  +    K SF  LR +
Sbjct: 775 ESSPEIQYIVNSLDLTSPHGAFPVMETLSLNQLINLQEVCHGQFPVESSRKQSFGCLRKV 834

Query: 538 KVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKL 597
           +VE C  +K LF  S+ + L QL+++KVT C ++  +V +E +       ++    F +L
Sbjct: 835 EVEDCDGLKFLFSLSVARGLSQLEEIKVTRCKSMVEMVSQERKEIREDADNVP--LFPEL 892

Query: 598 HFLKLQHLPQLTSSGFDLETPT 619
             L L+ LP+L++  F+ E P 
Sbjct: 893 RHLTLEDLPKLSNFCFE-ENPV 913

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488095|ref|XP_002270726.2| PREDICTED: probable disease resistance protein At4g27220-like [Vitis vinifera]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 282/626 (45%), Positives = 400/626 (63%), Gaps = 21/626 (3%)

Query: 8   EDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSP 67
           +DF    L  +E   LF+   G S K  + + I V++  +C GLPIAI T+A ALKNK+ 
Sbjct: 298 KDFRVQHLQEDETWILFKNTAGDSIKNPELQPIAVDVAKECAGLPIAIVTVAKALKNKNV 357

Query: 68  RIWKDAVNQLSNSNPRKIQGMDADL-SSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVD 126
            IWKDA+ QL +     I GM+  + SS++LSYE L+  EVKSL  LCGL    S I + 
Sbjct: 358 SIWKDALQQLKSQTSTNITGMETKVYSSLKLSYEHLEGDEVKSLCLLCGLF--SSDIHIG 415

Query: 127 DLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSI 186
           DLL+Y +GLRL    +TLE A+NR+ TL+DNLKS++ L + D   + +MH ++ + A  I
Sbjct: 416 DLLKYGVGLRLFQGTNTLEEAKNRIDTLVDNLKSSNFLLETDHNAYVRMHDLVRSTARKI 475

Query: 187 AAEKL-LFNIQNVADLKEELDKIDE-APTAISIPFRGIYELPERLGFLKLKLF-LFFTEN 243
           A+E+  +F  Q      EE  +IDE   T + +    I+ELPE L   KL+ F  F   +
Sbjct: 476 ASEQRHVFTHQKTTVRVEEWSRIDELQVTWVKLHDCDIHELPEGLVCPKLEFFECFLKTH 535

Query: 244 LSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKK 303
            +++IP+ FFEGM +L+VLD +  +  SLP S+ CL NLRTL L+ C + D+ II +LKK
Sbjct: 536 SAVKIPNTFFEGMKQLKVLDFSRMQLPSLPLSIQCLANLRTLCLDGCKLGDIVIIAELKK 595

Query: 304 LEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363
           LEILSL  S +EQLPREI QLT L+LLDLS+ S +K I   VIS+L RLE+L M NSFTQ
Sbjct: 596 LEILSLMSSDMEQLPREIAQLTHLRLLDLSDSSTIKVIPSGVISSLFRLEDLCMENSFTQ 655

Query: 364 WKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYE 423
           W+ EG+SNA L ELK LS LT L++ IPDA+++P+D+VF  L R+RI +GDVWSW + +E
Sbjct: 656 WEGEGKSNACLAELKHLSHLTFLDIQIPDAKLLPKDIVFENLVRYRILVGDVWSWEEIFE 715

Query: 424 TSKTLKL-QLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVH 482
            + TLKL + + S +L  G+  LLKRTEDLHL EL G  NV+ +L + EGF +L+HL+V 
Sbjct: 716 ANSTLKLNKFDTSLHLVDGISKLLKRTEDLHLRELCGGTNVLSKL-NREGFLKLKHLNVE 774

Query: 483 NGPEILHILNS---DGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKV 539
           + PEI +I+NS       G FP++E+L L+ LINL++VC G+        S   LR ++V
Sbjct: 775 SSPEIQYIVNSMDLTSSHGAFPVMETLSLNQLINLQEVCHGQFPAG----SLGCLRKVEV 830

Query: 540 EGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHF 599
           E C  +K LF  S+ + L +L++ KVT C ++  +V +  +    K  +++   F +L +
Sbjct: 831 EDCDGLKFLFSLSVARGLSRLEETKVTRCKSMVEMVSQGRKEI--KEDAVNVPLFPELRY 888

Query: 600 LKLQHLPQLTSSGFD----LETPTNT 621
           L L+ LP+L++  F+    L  P +T
Sbjct: 889 LTLEDLPKLSNFCFEENPVLSKPAST 914

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 286/641 (44%), Positives = 399/641 (62%), Gaps = 34/641 (5%)

Query: 15  LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAV 74
           L  +EA  LF+ +VG S +  D   I  ++  +C GLPIAI T+A ALKNK+  IWKDA+
Sbjct: 308 LQGDEAWILFKNMVGDSIENPDLLLIATDVAKECTGLPIAIVTVAKALKNKNVSIWKDAL 367

Query: 75  NQLSNSNPRKIQGMDADL-SSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVM 133
            QL       I GM   + S+++LSY+ L+  EVKSLF LCGL  +   I + DLL+Y M
Sbjct: 368 KQLKTQTSTNITGMGTKVYSTLKLSYKHLEGDEVKSLFLLCGLFSN--YIDIRDLLKYGM 425

Query: 134 GLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAA-EKLL 192
           GLRL    +TLE A+NR+ TL+DNLK+++LL +       +MH ++  +A+ IA+ E  +
Sbjct: 426 GLRLFQGTNTLEEAKNRIETLVDNLKASNLLLETRYNAVFRMHDVVQNVAIEIASKEHHV 485

Query: 193 FNIQNVADLKEELDKIDEAP--TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPD 250
           F  Q    + EE   +DE    T I +    I ELPE L             N SL+IP+
Sbjct: 486 FTFQTGVRM-EEWPNMDELQKFTMIYLDCCDIRELPEGLN-----------HNSSLKIPN 533

Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
            FFEGM +L+VLD T     SLPSSL CL NLRTL L+ C + D+ II +LKKLEILSL 
Sbjct: 534 TFFEGMKQLKVLDFTNMHLPSLPSSLHCLANLRTLCLDACKLGDITIIAELKKLEILSLM 593

Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQS 370
            S IEQLPRE+ QLT L+LLDL   SKLK I P+VIS+L++LE+L M NS+TQW+VEG+S
Sbjct: 594 DSDIEQLPRELSQLTHLRLLDLKGSSKLKVIPPDVISSLSQLEDLCMENSYTQWEVEGKS 653

Query: 371 NASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKL 430
           NA L ELK LS LTTL++ IPDA++ P+D+VF  L ++RI +GDVWSW +  ET+KTLKL
Sbjct: 654 NAYLAELKHLSYLTTLDIQIPDAKLFPKDVVFDNLMKYRIFVGDVWSWEENCETNKTLKL 713

Query: 431 -QLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILH 489
            + + S +L  G+  LL+ TEDLHL +L G  N++ +L D + F +L+HL+V + PEI  
Sbjct: 714 NEFDTSLHLVEGISKLLRXTEDLHLHDLRGTTNILSKL-DRQCFLKLKHLNVESSPEIRS 772

Query: 490 ILNSDGRVGT---FPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVK 546
           I+NS     +   FP++E+LFL  LINL++VC G+        SF  LR ++VE C  +K
Sbjct: 773 IMNSMDLTPSHHAFPVMETLFLRQLINLQEVCHGQF----PSGSFGFLRKVEVEDCDSLK 828

Query: 547 HLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLP 606
            LF  S+ + L +L+++ +T C ++  IV +  +     + +++   F +L +L LQ LP
Sbjct: 829 FLFSLSMARGLSRLKEITMTRCKSMGEIVPQGRKEIKDGDDAVNVPLFPELRYLTLQDLP 888

Query: 607 QLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVF 647
           +L +  F+     N   S P     G     TSLFN+  V+
Sbjct: 889 KLINFCFE----ENLMLSKPVSTIAGRS---TSLFNQAEVW 922

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083434|ref|XP_002307025.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222856474|gb|EEE94021.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 287/682 (42%), Positives = 413/682 (60%), Gaps = 32/682 (4%)

Query: 15  LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAV 74
           LS EE   LF+K+ G   +  D +++ +E+   C GLP+AI T+A ALKNK+   WK+A+
Sbjct: 311 LSEEETWELFKKMAGDHVEHPDLQSLAIEVAKMCAGLPVAIVTVARALKNKNLSQWKNAL 370

Query: 75  NQLSNSNPRKIQGMDADL-SSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVM 133
            +L   +PR   G+  D+ ++IELSY  L+ KE+KS F LC  +  G   +  DLL+Y M
Sbjct: 371 RELKRPSPRNFAGVQEDVYAAIELSYNHLESKELKSTFLLCSRM--GYNASTRDLLKYGM 428

Query: 134 GLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEKLLF 193
           GL L +   T+E A++RVH+L+  LK++ LL +  S+    MH  +  +A+SIA     F
Sbjct: 429 GLGLFSGFVTVEEAQDRVHSLVHKLKASGLLLENHSDWQFSMHDAVRDVAISIA-----F 483

Query: 194 NIQNVADLKEELDKIDEAPTAISIPFRGIY-----ELPERLGFLKLKLFLFFTENLSLQI 248
              +V    +E++    A   +   ++ I+     EL   + + +LK     +E+ SL+I
Sbjct: 484 RDCHVFVGGDEVEPKWSAKNMLK-KYKEIWLSSNIELLREMEYPQLKFLHVRSEDPSLEI 542

Query: 249 PDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILS 308
                 GM +L+VL LT     SLPS L  L NLRTL L    + ++A IG+LKKLEILS
Sbjct: 543 SSNICRGMHKLKVLVLTNISLVSLPSPLHFLKNLRTLCLHQSSLGEIADIGELKKLEILS 602

Query: 309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368
              S+I+ LPR+IGQLT L++LDLS+C +L  I PN+ SNL+ LEEL MGNSF  W  EG
Sbjct: 603 FAKSNIKHLPRQIGQLTKLRMLDLSDCFELDVIPPNIFSNLSMLEELCMGNSFHHWATEG 662

Query: 369 QSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTL 428
           + NASL EL  L  LT +++H+ D+ VM + ++   LERFRI IGDVW W   Y++ +TL
Sbjct: 663 EDNASLVELDHLPHLTNVDIHVLDSHVMSKGMLSKRLERFRIFIGDVWDWDGVYQSLRTL 722

Query: 429 KLQLNNS-TYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEI 487
           KL+LN S + L +G+ MLLKRT+DL+L EL G  NVV ELD  EGF +LRHLH+HN  +I
Sbjct: 723 KLKLNTSASNLEHGVLMLLKRTQDLYLLELKGVNNVVSELDT-EGFLQLRHLHLHNSSDI 781

Query: 488 LHILNSDGRVGT--FPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRV 545
            +I+N+     +  FP+LESLFL+NL++LEK+C G +      +SF  L II+V  C ++
Sbjct: 782 QYIINTSSEFPSHVFPVLESLFLYNLVSLEKLCHGILTA----ESFRKLTIIEVGNCVKL 837

Query: 546 KHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHL 605
           KHLFPFS+ + L QLQ + ++ C  ++ +V +E +        I  + F +L  L LQ L
Sbjct: 838 KHLFPFSVARGLSQLQTINISFCLTMEEVVAEEGDEFEDSCTEIDVMEFNQLSSLSLQCL 897

Query: 606 PQLTSSGFDLETPTNTQGS-NP-----GI----IAEGDPKDFTSLFNERVVFPSLKKLKL 655
           P L +     +T    Q   NP     G+    I+E +P++   LF E+++ P LKKL+L
Sbjct: 898 PHLKNFCSREKTSRLCQAQLNPVATSVGLQSKEISEDEPRNPLQLFCEKILIPKLKKLEL 957

Query: 656 SSINVEKIWLNSFSAIESWVVQ 677
            SINVEKIW        ++ VQ
Sbjct: 958 VSINVEKIWHGQLHRENTFPVQ 979

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	679
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.860	0.635	0.273	7e-48
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.855	0.589	0.261	1e-39
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.539	0.402	0.279	2.7e-20
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.490	0.370	0.284	5e-20
TAIR|locus:2171579	843	AT5G47250 [Arabidopsis thalian	0.468	0.377	0.291	7.8e-20
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.742	0.661	0.244	5.8e-18
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.712	0.541	0.250	7.2e-17
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.577	0.441	0.259	2.1e-16
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.491	0.392	0.262	5e-16
TAIR|locus:2171589	948	AT5G47260 [Arabidopsis thalian	0.556	0.398	0.253	4.3e-15

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 7.0e-48, Sum P(2) = 7.0e-48
 Identities = 167/611 (27%), Positives = 271/611 (44%)

Query:    15 LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSP-RIWKDA 73
             L  +EA  LF   VG  A   + + I  ++  +C GLP+AI TI   L+ K    +WK  
Sbjct:   272 LQEKEAWELFCHNVGEVANSDNVKPIAKDVSHECCGLPLAIITIGRTLRGKPQVEVWKHT 331

Query:    74 VNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVM 133
             +N L  S P  I   +    +++LSY+FL+   +KS F  C L  +   I V +L+ Y +
Sbjct:   332 LNLLKRSAP-SIDTEEKIFGTLKLSYDFLQ-DNMKSCFLFCALFPEDYSIKVSELIMYWV 389

Query:   134 GLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAV-SIAAEKLL 192
                LL      E   N   TL++ LK + LL DGDS D  KMH ++   A+  ++++   
Sbjct:   390 AEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKMHDVVRDFAIWFMSSQGEG 449

Query:   193 FNIQNVAD---LKEELDKIDEAPTAISIPFRGIYELPERLGXXXXXXXXXXTENLSL-QI 248
             F+   +A    ++   DK   +   +S+    +  LP  +             N  + ++
Sbjct:   450 FHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNVIEGVETLVLLLQGNSHVKEV 509

Query:   249 PDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVV-DVAIIGDLKKLEIL 307
             P+ F +    LR+LDL+G R  +LP S   L +LR+L L NC  + ++  +  L KL+ L
Sbjct:   510 PNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNLPSLESLVKLQFL 569

Query:   308 SLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367
              L  S+I +LPR +  L+ L+ + +SN  +L+ I    I  L+ LE L M  S   W ++
Sbjct:   570 DLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSSLEVLDMAGSAYSWGIK 629

Query:   368 GQSN---ASLGELKQLSRLTTLEVHIPDAQVMPQ--DLVFVELERFRICIGDVWSWSDGY 422
             G+     A+L E+  L  L  L + + D        D +   L +F+     + S S   
Sbjct:   630 GEEREGQATLDEVTCLPHLQFLAIKLLDVLSFSYEFDSLTKRLTKFQFLFSPIRSVSPPG 689

Query:   423 ETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHEL--DDEEGFARLRHLH 480
                  L +   N +    G   LL+    L L+   G   +   L    +  F  ++ L 
Sbjct:   690 TGEGCLAISDVNVSNASIGW--LLQHVTSLDLNYCEGLNGMFENLVTKSKSSFVAMKALS 747

Query:   481 VHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVE 540
             +H  P +      + ++  FP LE L L N +NLE + +    L         L++++V 
Sbjct:   748 IHYFPSLSLASGCESQLDLFPNLEELSLDN-VNLESIGELNGFLG---MRLQKLKLLQVS 803

Query:   541 GCHRVKHLFPFSXXXXXX-XXXXXXXTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHF 599
             GC ++K LF                   C  L+ +    S        S+      KL  
Sbjct:   804 GCRQLKRLFSDQILAGTLPNLQEIKVVSCLRLEELFNFSSVPVDFCAESL----LPKLTV 859

Query:   600 LKLQHLPQLTS 610
             +KL++LPQL S
Sbjct:   860 IKLKYLPQLRS 870

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.0e-39, P = 1.0e-39
 Identities = 164/626 (26%), Positives = 295/626 (47%)

Query:    11 LDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRI 69
             +D LL  E+A  LF K  G   +      I   +  +CGGLP+AI T+  A++ K + ++
Sbjct:   299 VDCLLE-EDAWELFCKNAGDVVRSDHVRKIAKAVSQECGGLPLAIITVGTAMRGKKNVKL 357

Query:    70 WKDAVNQLSNSNPRKIQGMDADL-SSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDL 128
             W   +++LS S P  I+ ++  +   ++LSY+FL+ K  K  F LC L  +   I V ++
Sbjct:   358 WNHVLSKLSKSVPW-IKSIEEKIFQPLKLSYDFLEDK-AKFCFLLCALFPEDYSIEVTEV 415

Query:   129 LRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAA 188
             +RY M    +    + E + N   T +++LK   LL DGD  D  KMH ++   A+ I +
Sbjct:   416 VRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHDVVRDFAIWIMS 475

Query:   189 EK------LLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGXXXXXXXXXXTE 242
                     L+ +   + D+++  DK+  +   +S+    +  LP+ +            +
Sbjct:   476 SSQDDSHSLVMSGTGLQDIRQ--DKLAPSLRRVSLMNNKLESLPDLVEEFCVKTSVLLLQ 533

Query:   243 -NLSL-QIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL-VVDVAII 298
              N  L ++P  F +    LR+L+L+G R  S PS SL  L +L +L L +C  +V +  +
Sbjct:   534 GNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDCFKLVKLPSL 593

Query:   299 GDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358
               L KLE+L L  + I + PR + +L   + LDLS    L+ I   V+S L+ LE L M 
Sbjct:   594 ETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSRLSSLETLDMT 653

Query:   359 NSFTQWKVEGQSN---ASLGELKQLSRLTTLEVHIPDAQVM--PQDLVFVELERFRICIG 413
             +S  +W V+G++    A++ E+  L RL  L + +  +  +   ++     L++F++ +G
Sbjct:   654 SSHYRWSVQGETQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWIKRLKKFQLVVG 713

Query:   414 DVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHEL-DDEEG 472
               +     ++  + L +   N + +  G   LL  T  L L+   G + ++ +L  D +G
Sbjct:   714 SRYILRTRHD-KRRLTISHLNVSQVSIGW--LLAYTTSLALNHCQGIEAMMKKLVSDNKG 770

Query:   473 FARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLI-NLEKVCDGKVRLNEDDK-- 529
             F  L+ L + N   I++  +    V T    +S  + +L+ NLE++   +V L    +  
Sbjct:   771 FKNLKSLTIEN--VIINTNSWVEMVSTNTSKQSSDILDLLPNLEELHLRRVDLETFSELQ 828

Query:   530 -----SFSNLRIIKVEGCHRVKHLFPFSXXXXXXXXXXXXXTDCTNLKLIVGKESENSAH 584
                      L+II++  C +++ L                 + C +L+         + H
Sbjct:   829 THLGLKLETLKIIEITMCRKLRTLLDKRNFLTIPNLEEIEISYCDSLQ---------NLH 879

Query:   585 KNGSISGVYFRKLHFLKLQHLPQLTS 610
             +       +   L  LKL++LP L S
Sbjct:   880 EALLYHQPFVPNLRVLKLRNLPNLVS 905

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
 Identities = 108/387 (27%), Positives = 187/387 (48%)

Query:    33 KKSDFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWKDAVNQLSNSNPRKIQGMDAD 91
             + S    +   IV+KCGGLP+A+ T+  A+ ++ +   W  A   L+   P +++GM+  
Sbjct:   330 ESSSIRRLAEIIVSKCGGLPLALITLGGAMAHRETEEEWIHASEVLTRF-PAEMKGMNYV 388

Query:    92 LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRV 151
              + ++ SY+ L+   ++S F  C L  +   I ++ L+ Y +G   LT++  +     + 
Sbjct:   389 FALLKFSYDNLESDLLRSCFLYCALFPEEHSIEIEQLVEYWVGEGFLTSSHGVNTIY-KG 447

Query:   152 HTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEKLLFNIQNVADLK---EELDKI 208
             + LI +LK+A LL  GD +   KMH ++ + A+ +A+E+  +    + +      E  K 
Sbjct:   448 YFLIGDLKAACLLETGDEKTQVKMHNVVRSFALWMASEQGTYKELILVEPSMGHTEAPKA 507

Query:   209 DEAPTA--ISIPFRGIYELPERLGXXXXXXXXXXTENLSLQ-IPDPFFEGMTELRVLDLT 265
             +    A  IS+    I  LPE+L            +N SL+ IP  FF  M  LRVLDL+
Sbjct:   508 ENWRQALVISLLDNRIQTLPEKL-ICPKLTTLMLQQNSSLKKIPTGFFMHMPVLRVLDLS 566

Query:   266 GFRFHSLPSSLGCLINLRTLSLENCLV-VDVAIIGDLKKLEILSLKHSS-IEQLPRE-IG 322
                   +P S+  L+ L  LS+    + V    +G+L+KL+ L L+ +  ++ +PR+ I 
Sbjct:   567 FTSITEIPLSIKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAIC 626

Query:   323 QLTCLKLLDL--SNCS-KLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQ 379
              L+ L++L+L  S    +L+    +    L   +  Y+ N  T     G +  SL  LK 
Sbjct:   627 WLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTL----GITVLSLETLKT 682

Query:   380 LSRLTTLEVHIPDAQVMP-QDLVFVEL 405
             L     L  HI    V    +L++  L
Sbjct:   683 LFEFGALHKHIQHLHVEECNELLYFNL 709

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 5.0e-20, P = 5.0e-20
 Identities = 102/359 (28%), Positives = 181/359 (50%)

Query:    15 LSNEEASHLFEKIVGHSAKKSDFETIGVE-IVAK-CGGLPIAIKTIANALKNK-SPRIWK 71
             L++ +A  LF+K VG     SD E   +  +VAK C GLP+A+  ++  +  K + + W+
Sbjct:   309 LADNDAYDLFQKKVGQITLGSDPEIRELSRVVAKKCCGLPLALNVVSETMSCKRTVQEWR 368

Query:    72 DAVNQLSNSNPRKIQGMDAD-LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLR 130
              A+  L NS   K  GMD   L  ++ SY+ LK ++VK     C L  + ++I  ++L+ 
Sbjct:   369 HAIYVL-NSYAAKFSGMDDKILPLLKYSYDSLKGEDVKMCLLYCALFPEDAKIRKENLIE 427

Query:   131 YVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAK---MHRIIHAIAVSIA 187
             Y +   ++  ++ ++ A N+ + +I +L  ASLL +    D A    +H ++  +A+ IA
Sbjct:   428 YWICEEIIDGSEGIDKAENQGYEIIGSLVRASLLMEEVELDGANIVCLHDVVREMALWIA 487

Query:   188 AE----KLLFNIQNVADLKEELDKIDE--APTAISIPFRGIYELPERLGXXXXXXXXXXT 241
             ++       F ++    L+E L K++       +S+    I  L  RL           +
Sbjct:   488 SDLGKQNEAFIVRASVGLREIL-KVENWNVVRRMSLMKNNIAHLDGRLDCMELTTLLLQS 546

Query:   242 ENLSLQIPDPFFEGMTELRVLDLTG-FRFHSLPSSLGCLINLRTLSLENCLVVDVAI-IG 299
              +L  +I   FF  M +L VLDL+G +    LP+ +  L++L+ L+L +  +  +   + 
Sbjct:   547 THLE-KISSEFFNSMPKLAVLDLSGNYYLSELPNGISELVSLQYLNLSSTGIRHLPKGLQ 605

Query:   300 DLKKLEILSLKHSSIEQLPREIGQLTCL---KLLDLSNCSKLKEIRPNVISNLTRLEEL 355
             +LKKL  L L+ +S  QL   +G ++CL   K+L LS  S   ++  + +  L  LE L
Sbjct:   606 ELKKLIHLYLERTS--QLGSMVG-ISCLHNLKVLKLSGSSYAWDL--DTVKELEALEHL 659

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2171579 AT5G47250 [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 7.8e-20, Sum P(2) = 7.8e-20
 Identities = 98/336 (29%), Positives = 164/336 (48%)

Query:     7 SEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKS 66
             +ED     LS  +A  LF+  V H    ++   I  +IVAKC GLP+A++ I   + +KS
Sbjct:   305 NEDIEVQCLSENDAWDLFDMKV-HCDGLNEISDIAKKIVAKCCGLPLALEVIRKTMASKS 363

Query:    67 PRI-WKDAVNQLSNSNPRKIQGMDADLSSI-ELSYEFLKCKEVKSLFQLCGLLKDGSRIA 124
               I W+ A++ L  S   +++G +  +  + +LSY++LK K  K  F  C L      I 
Sbjct:   364 TVIQWRRALDTLE-SYRSEMKGTEKGIFQVLKLSYDYLKTKNAKC-FLYCALFPKAYYIK 421

Query:   125 VDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAV 184
              D+L+ Y +G   +   D  E A++R + +IDNL  A LL + + + +  MH +I  +A+
Sbjct:   422 QDELVEYWIGEGFIDEKDGRERAKDRGYEIIDNLVGAGLLLESNKKVY--MHDMIRDMAL 479

Query:   185 SIAAEKL---LFNIQNVADLKEELDKID-EAPTAISIPFRGIYELPE--RLGXXXXXXXX 238
              I +E      + ++  A L +  D  D    T +S+    I  +P+             
Sbjct:   480 WIVSEFRDGERYVVKTDAGLSQLPDVTDWTTVTKMSLFNNEIKNIPDDPEFPDQTNLVTL 539

Query:   239 XXTENLSLQIPDPFFEGMTELRVLDLT-GFRFHSLPSSLGCLINLRTLSLENCLVVDVAI 297
                 N  + I   FF  M+ L VLDL+  F+   LP  +  L++LR L+L    +  +  
Sbjct:   540 FLQNNRLVDIVGKFFLVMSTLVVLDLSWNFQITELPKGISALVSLRLLNLSGTSIKHLPE 599

Query:   298 -IGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDL 332
              +G L KL  L+L+ +S   L R +G ++ L+ L +
Sbjct:   600 GLGVLSKLIHLNLESTS--NL-RSVGLISELQKLQV 632

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 135/552 (24%), Positives = 240/552 (43%)

Query:    15 LSNEEASHLFEKIVGHSAKKSD--FETIGVEIVAKCGGLPIAIKTIANALKNKSP-RIWK 71
             L  E+A  LF+  VG +  +SD     +  E+  KC GLP+A+  I   + +K+  + W+
Sbjct:   198 LEPEDAWELFKNKVGDNTLRSDPVIVELAREVAQKCRGLPLALSVIGETMASKTMVQEWE 257

Query:    72 DAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRY 131
              A++ L+ S        +  L  ++ SY+ L  + +KS F  C L  +   I  + L+ Y
Sbjct:   258 HAIDVLTRSAAEFSNMGNKILPILKYSYDSLGDEHIKSCFLYCALFPEDDEIYNEKLIDY 317

Query:   132 VMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAE-- 189
              +    +     ++ ARN+ + ++  L  A+LL    +E H  MH ++  +A+ IA++  
Sbjct:   318 WICEGFIGEDQVIKRARNKGYEMLGTLTLANLLTKVGTE-HVVMHDVVREMALWIASDFG 376

Query:   190 --KLLFNIQNVADLKEELDKID-EAPTAISIPFRGIYELPERLGXXXXXXXXXXTENLSL 246
               K  F ++    L E  +  D  A   +S+    I E+               +  L  
Sbjct:   377 KQKENFVVRARVGLHERPEAKDWGAVRRMSLMDNHIEEITCESKCSELTTLFLQSNQLK- 435

Query:   247 QIPDPFFEGMTELRVLDLTGFR-FHSLPSSLGCLINLRTLSLENCLVVDVAI-IGDLKKL 304
              +   F   M +L VLDL+  R F+ LP  +  L++L+ L L N  +  + + +  LKKL
Sbjct:   436 NLSGEFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIKQLPVGLKKLKKL 495

Query:   305 EILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQW 364
               L+L ++        I +L  L+LL L   SK+     +V+  L +L+ L         
Sbjct:   496 TFLNLAYTVRLCSISGISRLLSLRLLRLLG-SKVHG-DASVLKELQKLQNLQ------HL 547

Query:   365 KVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFV-ELERFRICIGDVWSWSDGYE 423
              +   +  SL +  +L+ L ++ + I      P DL F+  +E     +  +W  +  + 
Sbjct:   548 AITLSAELSLNQ--RLANLISI-LGIEGFLQKPFDLSFLASMEN----LSSLWVKNSYFS 600

Query:   424 TSKTLKLQLNNSTYLGYGMKM-LLKRTEDLHLDELAGFKNVVHELDDEEGFA-RLRHLHV 481
               K  + +   S+YL    K+        L L +    K++   L     FA  L +L++
Sbjct:   601 EIKCRESE-TASSYLRINPKIPCFTNLSRLGLSKCHSIKDLTWIL-----FAPNLVYLYI 654

Query:   482 HNGPEILHILNSDGR-----VGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRI 536
              +  E+  I+N +       +  F  LE L L+NL  LE +    +        F  L I
Sbjct:   655 EDSREVGEIINKEKATNLTSITPFLKLERLILYNLPKLESIYWSPLH-------FPRLLI 707

Query:   537 IKVEGCHRVKHL 548
             I V  C +++ L
Sbjct:   708 IHVLDCPKLRKL 719

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 7.2e-17, P = 7.2e-17
 Identities = 131/523 (25%), Positives = 225/523 (43%)

Query:    15 LSNEEASHLFEKIVGHSAKKS--DFETIGVEIVAKCGGLPIAIKTIANALKNKSP-RIWK 71
             L   EA  LF+  VG +  K   D   +  ++  KC GLP+A+  I   +  K   + W+
Sbjct:   313 LEPNEAWELFQMKVGENTLKGHPDIPELARKVAGKCCGLPLALNVIGETMACKRMVQEWR 372

Query:    72 DAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRY 131
             +A++ LS S   +  GM+  L  ++ SY+ L  ++VK  F  C L  +  R+  + L+ Y
Sbjct:   373 NAIDVLS-SYAAEFPGMEQILPILKYSYDNLNKEQVKPCFLYCSLFPEDYRMEKERLIDY 431

Query:   132 VMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFD-GDSEDHAKMHRIIHAIAVSIAAEK 190
              +    +   ++ E A ++ + +I  L  A LL +   +++  KMH ++  +A+ IA++ 
Sbjct:   432 WICEGFIDENESRERALSQGYEIIGILVRACLLLEEAINKEQVKMHDVVREMALWIASDL 491

Query:   191 LLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGXXXXXXXXXXT----ENLSL 246
                  + +  +   L ++ +     S+    + E    +           T    +N SL
Sbjct:   492 GEHKERCIVQVGVGLREVPKVKNWSSVRRMSLMENEIEILSGSPECLELTTLFLQKNDSL 551

Query:   247 -QIPDPFFEGMTELRVLDLTG-FRFHSLPSSLGCLINLRTLSLENCLVVDVAI-IGDLKK 303
               I D FF  +  L VLDL+G      LP+ +  L++LR L L    +  + + + +LKK
Sbjct:   552 LHISDEFFRCIPMLVVLDLSGNSSLRKLPNQISKLVSLRYLDLSWTYIKRLPVGLQELKK 611

Query:   304 LEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN-SF- 361
             L  L L +    +    I  ++ L+ L L   SK+  +  +++  L  LE L + N S  
Sbjct:   612 LRYLRLDYMKRLKSISGISNISSLRKLQLLQ-SKMS-LDMSLVEELQLLEHLEVLNISIK 669

Query:   362 TQWKVEGQSNAS-LGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSD 420
             +   VE   NA  L +  Q+  L  ++        +P D+  +     R C        +
Sbjct:   670 SSLVVEKLLNAPRLVKCLQILVLRGVQEESSGVLTLP-DMDNLNKVIIRKC-----GMCE 723

Query:   421 GYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFA-RLRHL 479
                  KTL L  N S    +     L     +H+    G K++   L     FA  L  L
Sbjct:   724 IKIERKTLSLSSNRSPKTQF-----LHNLSTVHISSCDGLKDLTWLL-----FAPNLTSL 773

Query:   480 HVHNGPEILHILNSDGRV---GTFPL--LESLFLHNLINLEKV 517
              V +   +  I+N +  +   G  P   LESL LHNL  L  +
Sbjct:   774 EVLDSELVEGIINQEKAMTMSGIIPFQKLESLRLHNLAMLRSI 816

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
 Identities = 108/416 (25%), Positives = 192/416 (46%)

Query:    15 LSNEEASHLFEKIVGHSAKKS--DFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWK 71
             L+ ++A  LF K VG     S  +  T+   +  KC GLP+A+  I   +  K + + W+
Sbjct:   311 LAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYKRTVQEWR 370

Query:    72 DAVNQLSNSNPRKIQGMDADLSSI-ELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLR 130
              A++ L++S   +  GM+ ++  I + SY+ LK +++K  FQ C L  +   I  +DL+ 
Sbjct:   371 SAIDVLTSS-AAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIEKNDLVD 429

Query:   131 YVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAE- 189
             Y +G   +        A N+ + +I  L  + LL + ++++  KMH ++  +A+ IA++ 
Sbjct:   430 YWIGEGFIDR--NKGKAENQGYEIIGILVRSCLLME-ENQETVKMHDVVREMALWIASDF 486

Query:   190 -KLLFNIQNVADLKEE-LDKIDEAPTA--ISIPFRGIYELPERLGXXXXXXXXXXTENLS 245
              K   N    A L+   + +I++   A  +S+ F  I  + +              +N  
Sbjct:   487 GKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDA-PESPQLITLLLRKNFL 545

Query:   246 LQIPDPFFEGMTELRVLDLTGFR-FHSLPSSLGCLINLRTLSLENCLV-VDVAIIGDLKK 303
               I   FF  M  L VLDL+  R    LP+ +   ++L+ LSL    + +  A + +L+K
Sbjct:   546 GHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGLVELRK 605

Query:   304 LEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELY-MGNSFT 362
             L  L+L+++ + +    I  LT LK+L L   S   E  P V++ L  LE L  +  +  
Sbjct:   606 LLYLNLEYTRMVESICGISGLTSLKVLRLF-VSGFPE-DPCVLNELQLLENLQTLTITLG 663

Query:   363 QWKVEGQ--SNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVW 416
                +  Q  SN  L    +  R+  L    P + V+        L+       D+W
Sbjct:   664 LASILEQFLSNQRLASCTRALRIENLN---PQSSVISFVATMDSLQELHFADSDIW 716

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 5.0e-16, P = 5.0e-16
 Identities = 93/354 (26%), Positives = 162/354 (45%)

Query:    15 LSNEEASHLFEKIVGHSAKKS--DFETIGVEIVAKCGGLPIAIKTIANALKNKSP-RIWK 71
             L  +EA  LF+K VG    +S  D  T+  ++  KC GLP+A+  I  A+ ++   + W+
Sbjct:   310 LPPDEAWELFQKKVGPIPLQSHEDIPTLARKVAEKCCGLPLALSVIGKAMASRETVQEWQ 369

Query:    72 DAVNQLSNSNPRKIQGMDAD-LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLR 130
               ++ L NS+  +   M+   L  ++ SY+ LK ++VK  F  C L  +   +  ++L+ 
Sbjct:   370 HVIHVL-NSSSHEFPSMEEKILPVLKFSYDDLKDEKVKLCFLYCSLFPEDYEVRKEELIE 428

Query:   131 YVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAA-- 188
             Y M    +   +  + A N+ H +I +L  A LL DG+     KMH +I  +A+ IA+  
Sbjct:   429 YWMCEGFIDGNEDEDGANNKGHDIIGSLVRAHLLMDGELTTKVKMHDVIREMALWIASNF 488

Query:   189 --EKLLFNIQNVADLKEELDKID-EAPTAISIPFRGIYELPERLGXXXXXXXXXXTENLS 245
               +K    ++    L      I+ E+   +S+    I  +                  L 
Sbjct:   489 GKQKETLCVKPGVQLCHIPKDINWESLRRMSLMCNQIANISSSSNSPNLSTLLLQNNKL- 547

Query:   246 LQIPDPFFEGMTELRVLDLT-GFRFHSLPSSLGCLINLRTLSLENCLVVDVAI-IGDLKK 303
             + I   FF  M  L VLDL+      SLP ++  L +L+ ++L    +  + +   +LKK
Sbjct:   548 VHISCDFFRFMPALVVLDLSRNSSLSSLPEAISKLGSLQYINLSTTGIKWLPVSFKELKK 607

Query:   304 LEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357
             L  L+L+ +  ++L   +G  T      L N   LK     V  + + +EEL +
Sbjct:   608 LIHLNLEFT--DELESIVGIAT-----SLPNLQVLKLFSSRVCIDGSLMEELLL 654

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 4.3e-15, P = 4.3e-15
 Identities = 101/399 (25%), Positives = 178/399 (44%)

Query:    15 LSNEEASHLFEKIVGHSAKKS--DFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWK 71
             LS EEA  LF++ VG +  +S  D   +   + + C GLP+A+  I  A+  K + R W+
Sbjct:   301 LSPEEAWDLFQETVGENTLRSHQDIPKLARVVASTCRGLPLALNLIGEAMSGKRTVREWR 360

Query:    72 DAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRY 131
               ++ L++S        D  L  ++  Y+ +  + ++  F  C L  +   I  +DL+ Y
Sbjct:   361 YTIHVLASSTAEFPDMEDGTLPILKSIYDNMSDEIIRLCFLYCALFPENLDIGKEDLVNY 420

Query:   132 VMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEK- 190
              +   +L   D  E A  + + +I +L    LL +  + +  KMH ++  +A+ IA+E  
Sbjct:   421 WICEGILAKEDR-EEAEIQGYEIICDLVRMRLLMESGNGNCVKMHGMVREMALWIASEHF 479

Query:   191 LLFNIQNVADLKEELD-KIDEAPTAISIPFRGIYELPERLGXXXXXXXXXXTENLSLQ-I 248
             ++   + +  +    D ++    +  S   + I + P+               N  L+ I
Sbjct:   480 VVVGGERIHQMLNVNDWRMIRRMSVTSTQIQNISDSPQ----CSELTTLVFRRNRHLKWI 535

Query:   249 PDPFFEGMTELRVLDLTGFR-FHSLPSSLGCLINLRTLSLENCLVVDVAI-IGDLKKLEI 306
                FF+ MT L VLDL+  R    LP  +  L+ LR L+L    +  + + + +LK L  
Sbjct:   536 SGAFFQWMTGLVVLDLSFNRELAELPEEVSSLVLLRFLNLSWTCIKGLPLGLKELKSLIH 595

Query:   307 LSLKHSSIEQLPREIGQLTCLKLLDL--SNCSKLKEIRP-NVISNLTRLEELYMGNSFTQ 363
             L L ++S  Q    I  L  L++L L  S    LK +    ++ +L  L     G+S  Q
Sbjct:   596 LDLDYTSNLQEVDVIASLLNLQVLRLFHSVSMDLKLMEDIQLLKSLKELSLTVRGSSVLQ 655

Query:   364 WKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVF 402
               +  Q  AS      + RL   E  I D  ++  + +F
Sbjct:   656 RLLSIQRLAS-----SIRRLHLTETTIVDGGILSLNAIF 689

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	679
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	3e-14
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 14  LLSNEEASHLFEKIVGH--SAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKS-PRIW 70
            L  EE+  LF   V         + E +  EIV KC GLP+A+K +   L  KS  + W
Sbjct: 155 SLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEW 214

Query: 71  KDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLR 130
           +  + QL+N       G++  LS + LSY+ L    +K  F    L  +   I  + L++
Sbjct: 215 EHVLEQLNNE-LAGRDGLNEVLSILSLSYDNLP-MHLKRCFLYLALFPEDYNIRKEQLIK 272

Query: 131 YVMGLRLLT 139
             +    + 
Sbjct: 273 LWIAEGFVI 281

Length = 285

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 50.6 bits (121), Expect = 3e-06
 Identities = 95/383 (24%), Positives = 159/383 (41%), Gaps = 91/383 (23%)

Query: 36  DFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRKIQGMDADLSSI 95
            F  +  E+  + G LP+ +  + + L+ +    W D + +L N    KI+       ++
Sbjct: 373 GFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIE------KTL 426

Query: 96  ELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLI 155
            +SY+ L  K+ K++F+    L +G ++    LL        L N+D        V+  +
Sbjct: 427 RVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLL--------LANSDL------DVNIGL 472

Query: 156 DNLKSASLLFDGDSEDHAKMHRIIHAIAVSI--------AAEKLLFNIQNVADLKE---- 203
            NL   SL+     ED  +MH ++  +   I           + L + +++ D+ E    
Sbjct: 473 KNLVDKSLIHV--REDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTG 530

Query: 204 ---------ELDKIDEAPTAISIPFRGI--------------------YELPERLGFLKL 234
                    ++D+IDE     +  F+G+                    + LPE   +L  
Sbjct: 531 TKKVLGITLDIDEIDELHIHEN-AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPP 589

Query: 235 KLFL--------------FFTENL-SLQIP----DPFFEG---MTELRVLDLTGFRFHSL 272
           KL L              F  ENL  LQ+     +  ++G   +T LR +DL G +    
Sbjct: 590 KLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE 649

Query: 273 PSSLGCLINLRTLSLENC--LVVDVAIIGDLKKLEILSLKH-SSIEQLPREIGQLTCLKL 329
              L    NL TL L +C  LV   + I  L KLE L +    ++E LP  I  L  L  
Sbjct: 650 IPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR 708

Query: 330 LDLSNCSKLKEIRPNVISNLTRL 352
           L+LS CS+LK   P++ +N++ L
Sbjct: 709 LNLSGCSRLK-SFPDISTNISWL 730

syringae 6; Provisional. Length = 1153

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.4 bits (110), Expect = 4e-05
 Identities = 52/169 (30%), Positives = 73/169 (43%), Gaps = 35/169 (20%)

Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL----------- 291
            LS  IPD  F   + LR L+L+   F +     G + NL TL L N +           
Sbjct: 104 QLSGPIPDDIFTTSSSLRYLNLSNNNF-TGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS 162

Query: 292 -----VVDV----------AIIGDLKKLEILSLKHSS-IEQLPREIGQLTCLKLLDLSNC 335
                V+D+            + +L  LE L+L  +  + Q+PRE+GQ+  LK + L   
Sbjct: 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222

Query: 336 SKLKEIRPNVISNLTRLEEL-YMGNSFTQWKVEGQSNASLGELKQLSRL 383
           +   EI P  I  LT L  L  + N+ T     G   +SLG LK L  L
Sbjct: 223 NLSGEI-PYEIGGLTSLNHLDLVYNNLT-----GPIPSSLGNLKNLQYL 265

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 13/155 (8%)

Query: 259 LRVLDLTG-FRFHSLPSSLGCLINLRTLSL-ENCLVVDV-AIIGDLKKLEILSLKHSSIE 315
           L+VLDL G      +P+SL  L +L  L+L  N LV  +   +G +K L+ + L ++++ 
Sbjct: 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225

Query: 316 -QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASL 374
            ++P EIG LT L  LDL   +    I P+ + NL  L+ L++     Q K+ G    S+
Sbjct: 226 GEIPYEIGGLTSLNHLDLVYNNLTGPI-PSSLGNLKNLQYLFL----YQNKLSGPIPPSI 280

Query: 375 GELKQLSRL----TTLEVHIPDAQVMPQDLVFVEL 405
             L++L  L     +L   IP+  +  Q+L  + L
Sbjct: 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 303 KLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
            L+ L L ++ +  +P      L  LK+LDLS    L  I P   S L  L  L +  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSG 57

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	679
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.94
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.94
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.91
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.91
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.89
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.87
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.81
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.8
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.6
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.6
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.57
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.56
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.55
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.51
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.3
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.2
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.07
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.96
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.95
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.91
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.88
KOG4341	483	consensus F-box protein containing LRR [General fu	98.79
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.79
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.65
PLN03150	623	hypothetical protein; Provisional	98.63
KOG4341	483	consensus F-box protein containing LRR [General fu	98.57
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.55
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.52
PLN03150	623	hypothetical protein; Provisional	98.45
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.41
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.39
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.35
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.29
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.22
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.22
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.22
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.12
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.12
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.96
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.94
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.92
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.76
PRK15386	426	type III secretion protein GogB; Provisional	97.75
PRK15386	426	type III secretion protein GogB; Provisional	97.73
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.71
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.69
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.58
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.45
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.12
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.81
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.76
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.73
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.73
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.62
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.31
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.27
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.22
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.14
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.01
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.45
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.45
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.42
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.42
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.59
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.9
smart00370	26	LRR Leucine-rich repeats, outliers.	92.41
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.41
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.63
smart00370	26	LRR Leucine-rich repeats, outliers.	91.23
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.23
PRK04841	903	transcriptional regulator MalT; Provisional	90.28
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	83.25
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	81.97
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	80.1
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	80.01

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-60  Score=525.50  Aligned_cols=459  Identities=26%  Similarity=0.348  Sum_probs=345.0

Q ss_pred             CCCCCCceeccCCCHHHHHHHHHHHhCCC--CCCCChHHHHHHHHHHhCCcchHHHHHHHHhcCC-ChHHHHHHHHHhhc
Q 005744            3 SYEYSEDFLDWLLSNEEASHLFEKIVGHS--AKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWKDAVNQLSN   79 (679)
Q Consensus         3 ~~~~~~~~~~~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~-~~~~W~~~~~~l~~   79 (679)
                      +|+++..+++++|+++|||+||+++||..  ..+++++++|+++|++|+|+|||++++|+.|+.| +.++|+++.+.+.+
T Consensus       305 ~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s  384 (889)
T KOG4658|consen  305 AMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKS  384 (889)
T ss_pred             cccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccc
Confidence            48999999999999999999999999954  3445699999999999999999999999999988 88899999999998


Q ss_pred             cCCCcccccccc-cceeeeccccCChhhHHHHHHhccccCCCCcccHHhHHHHHhhcccccccchHHHHHHHHHHHHHHH
Q 005744           80 SNPRKIQGMDAD-LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNL  158 (679)
Q Consensus        80 ~~~~~~~~~~~~-~~~l~~SY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~~~L  158 (679)
                      ....+..++.+. +++|++|||+||.+ +|.||+|||+||+||+|+++++|..|+||||+++.+..+.+++.+++|+.+|
T Consensus       385 ~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L  463 (889)
T KOG4658|consen  385 SLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL  463 (889)
T ss_pred             cccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence            866666666655 89999999999966 9999999999999999999999999999999998766678899999999999


Q ss_pred             HhccccccCC---CCCceEehhhHHHHHHHHHh-----cccEeEEecccchhhhhh-hhcCCCeEEEccCCCcccCCccc
Q 005744          159 KSASLLFDGD---SEDHAKMHRIIHAIAVSIAA-----EKLLFNIQNVADLKEELD-KIDEAPTAISIPFRGIYELPERL  229 (679)
Q Consensus       159 ~~~~~~~~~~---~~~~~~mhdli~~l~~~~~~-----~e~~~~~~~~~~~~~~~~-~~~~~l~~l~l~~~~~~~l~~~~  229 (679)
                      +++++++..+   +..+|+|||++||+|.++++     +++ ..+..+......|+ ..+..+|++++.++.+..++...
T Consensus       464 V~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~  542 (889)
T KOG4658|consen  464 VRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS  542 (889)
T ss_pred             HHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc-eEEECCcCccccccccchhheeEEEEeccchhhccCCC
Confidence            9999998765   45789999999999999999     666 33343334444555 55678999999999999999999


Q ss_pred             CCcceeeeeeccCCc-ccCCCchhhcCCCCccEEEeCCCc-CCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcE
Q 005744          230 GFLKLKLFLFFTENL-SLQIPDPFFEGMTELRVLDLTGFR-FHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEI  306 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~  306 (679)
                      .+++|++|.+.+|.. ...++..+|..++.||+||+++|. +.++|++|+.|.|||||+++++.+.. |.++++|+.|.+
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY  622 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence            999999999999873 457888889999999999999875 78999999999999999999999998 999999999999


Q ss_pred             EEecCC-CCCccchhhhcCCCCCEEcccCCc-cccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCc
Q 005744          307 LSLKHS-SIEQLPREIGQLTCLKLLDLSNCS-KLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLT  384 (679)
Q Consensus       307 L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~-~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~  384 (679)
                      |++..+ .+..+|..+..|.+||+|.+.... ..+..-...+.++++|+.+.+.....         ..+..+..++.|+
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~---------~~~e~l~~~~~L~  693 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV---------LLLEDLLGMTRLR  693 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh---------HhHhhhhhhHHHH
Confidence            999988 445556556669999999887632 11111111133444444444322211         1223333444443


Q ss_pred             ----eEEeecCCCccCCccc-cccccceeEEEeCCcccCCC-CCCCcceEEecCCCcceechhHHHHhhccccccccccc
Q 005744          385 ----TLEVHIPDAQVMPQDL-VFVELERFRICIGDVWSWSD-GYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELA  458 (679)
Q Consensus       385 ----~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~  458 (679)
                          .+.+.++........+ .+.+|+.|.+..+...+... .......               ...++++.++.+.+|.
T Consensus       694 ~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~---------------~~~f~~l~~~~~~~~~  758 (889)
T KOG4658|consen  694 SLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIV---------------LLCFPNLSKVSILNCH  758 (889)
T ss_pred             HHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccch---------------hhhHHHHHHHHhhccc
Confidence                2222222323333333 66777777776665442111 0000000               0014566666666666


Q ss_pred             CcccccccccchhhccccceEeeecCCCeeEEE
Q 005744          459 GFKNVVHELDDEEGFARLRHLHVHNGPEILHIL  491 (679)
Q Consensus       459 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  491 (679)
                      ....+.. .   .-.|+|+.|.+..|..++.+.
T Consensus       759 ~~r~l~~-~---~f~~~L~~l~l~~~~~~e~~i  787 (889)
T KOG4658|consen  759 MLRDLTW-L---LFAPHLTSLSLVSCRLLEDII  787 (889)
T ss_pred             cccccch-h---hccCcccEEEEecccccccCC
Confidence            5544332 2   335788888888887666543

>PLN03210 Resistant to P

Probab=100.00  E-value=9.8e-52  Score=485.04  Aligned_cols=542  Identities=20%  Similarity=0.280  Sum_probs=344.9

Q ss_pred             CCCCCCceeccCCCHHHHHHHHHHHhCCC-CCCCChHHHHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHhhccC
Q 005744            3 SYEYSEDFLDWLLSNEEASHLFEKIVGHS-AKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSN   81 (679)
Q Consensus         3 ~~~~~~~~~~~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~W~~~~~~l~~~~   81 (679)
                      .++++++|+|+.|+++|||+||+++||+. .+++++++++++||++|+|+||||+++|+.|++++..+|+++++++.+..
T Consensus       339 ~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~  418 (1153)
T PLN03210        339 AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL  418 (1153)
T ss_pred             hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc
Confidence            46788999999999999999999999954 45667999999999999999999999999999999999999999987654


Q ss_pred             CCcccccccccceeeeccccCChhhHHHHHHhccccCCCCcccHHhHHHHHhhcccccccchHHHHHHHHHHHHHHHHhc
Q 005744           82 PRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSA  161 (679)
Q Consensus        82 ~~~~~~~~~~~~~l~~SY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~~~L~~~  161 (679)
                      ..      ++..+|++||++|+.++.|.||+++|+||.++.+   +.+..|.|.+.+...           .-++.|+++
T Consensus       419 ~~------~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~~-----------~~l~~L~~k  478 (1153)
T PLN03210        419 DG------KIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDVN-----------IGLKNLVDK  478 (1153)
T ss_pred             cH------HHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCch-----------hChHHHHhc
Confidence            32      2388999999999874479999999999998654   346778887655321           137789999


Q ss_pred             cccccCCCCCceEehhhHHHHHHHHHhccc------EeEEecccchhhhhh--hhcCCCeEEEccCCCcccCC--c-cc-
Q 005744          162 SLLFDGDSEDHAKMHRIIHAIAVSIAAEKL------LFNIQNVADLKEELD--KIDEAPTAISIPFRGIYELP--E-RL-  229 (679)
Q Consensus       162 ~~~~~~~~~~~~~mhdli~~l~~~~~~~e~------~~~~~~~~~~~~~~~--~~~~~l~~l~l~~~~~~~l~--~-~~-  229 (679)
                      ++++..+  ..++|||++|+||+++++++.      .+.+... .+.....  ....+++.+.+....+.++.  . .+ 
T Consensus       479 sLi~~~~--~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~-di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~  555 (1153)
T PLN03210        479 SLIHVRE--DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAK-DICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFK  555 (1153)
T ss_pred             CCEEEcC--CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHH-HHHHHHHhCcccceeeEEEeccCccceeeecHHHHh
Confidence            9997643  469999999999999987653      1222221 1222211  23345566665544443221  1 11 


Q ss_pred             CCcceeeeeeccCC------cccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCC
Q 005744          230 GFLKLKLFLFFTEN------LSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLK  302 (679)
Q Consensus       230 ~~~~L~~L~l~~~~------~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~  302 (679)
                      ++++|+.|.+..+.      ....+|.++..-..+||+|++.++.++.+|..+ ...+|+.|++++|.+.. +..+..++
T Consensus       556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~  634 (1153)
T PLN03210        556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLT  634 (1153)
T ss_pred             cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCC
Confidence            55666666554332      112234333211233555555555555555444 23445555555544444 44444455


Q ss_pred             CCcEEEecCC-CCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCC
Q 005744          303 KLEILSLKHS-SIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLS  381 (679)
Q Consensus       303 ~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~  381 (679)
                      +|++|+++++ .+..+|. ++.+++|++|++.+|..+..+|.. ++++++|+.|++++|......+       .. .+++
T Consensus       635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp-------~~-i~l~  704 (1153)
T PLN03210        635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILP-------TG-INLK  704 (1153)
T ss_pred             CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccC-------Cc-CCCC
Confidence            5555555443 3344442 444445555555554444444443 4444555555544442211111       00 1334


Q ss_pred             CCceEEeecCC-CccCCccccccccceeEEEeCCcccC--CCCCCCcceEEecCCCc-------ceechhHHHHhhcccc
Q 005744          382 RLTTLEVHIPD-AQVMPQDLVFVELERFRICIGDVWSW--SDGYETSKTLKLQLNNS-------TYLGYGMKMLLKRTED  451 (679)
Q Consensus       382 ~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~l~~L~L~~~~~-------~~~~~~~~~~l~~L~~  451 (679)
                      +|+.|+++++. +..+|..  ..+|+.|++..+.+...  ...+++|+.|.+.....       ...+......+++|+.
T Consensus       705 sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~  782 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR  782 (1153)
T ss_pred             CCCEEeCCCCCCccccccc--cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence            44444444332 1122211  22344444432221110  01123333333332111       1111122223578999


Q ss_pred             cccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCcccc
Q 005744          452 LHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSF  531 (679)
Q Consensus       452 L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l  531 (679)
                      |++++|.....+|..+   +++++|+.|++++|..++.++..    ..+++|+.|++++|.++..++.          ..
T Consensus       783 L~Ls~n~~l~~lP~si---~~L~~L~~L~Ls~C~~L~~LP~~----~~L~sL~~L~Ls~c~~L~~~p~----------~~  845 (1153)
T PLN03210        783 LFLSDIPSLVELPSSI---QNLHKLEHLEIENCINLETLPTG----INLESLESLDLSGCSRLRTFPD----------IS  845 (1153)
T ss_pred             eeCCCCCCccccChhh---hCCCCCCEEECCCCCCcCeeCCC----CCccccCEEECCCCCccccccc----------cc
Confidence            9999998888899888   88999999999999988887643    2689999999999999887642          34


Q ss_pred             CCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCcccc
Q 005744          532 SNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSS  611 (679)
Q Consensus       532 ~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l  611 (679)
                      ++|+.|++++ +.++.+|.  .+..+++|+.|++.+|++++.++.             .+..+++|+.+++.+|++|+.+
T Consensus       846 ~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~-------------~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        846 TNISDLNLSR-TGIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSL-------------NISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             cccCEeECCC-CCCccChH--HHhcCCCCCEEECCCCCCcCccCc-------------ccccccCCCeeecCCCcccccc
Confidence            6899999988 57888753  468899999999999999998875             2447899999999999999876


Q ss_pred             cc
Q 005744          612 GF  613 (679)
Q Consensus       612 ~~  613 (679)
                      +.
T Consensus       910 ~l  911 (1153)
T PLN03210        910 SW  911 (1153)
T ss_pred             cC
Confidence            54

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=9.7e-31  Score=308.31  Aligned_cols=427  Identities=17%  Similarity=0.138  Sum_probs=184.3

Q ss_pred             cCCCeEEEccCCCcc-cCCccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCC-cCCccccCCcCCCE
Q 005744          209 DEAPTAISIPFRGIY-ELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLRT  284 (679)
Q Consensus       209 ~~~l~~l~l~~~~~~-~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~  284 (679)
                      .++++.|++++|.+. .+|...  .+++|++|++++|.+.+.+|.   +.+++|++|++++|.+. .+|..++++++|++
T Consensus        92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  168 (968)
T PLN00113         92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV  168 (968)
T ss_pred             CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence            445555555555542 344332  445555555555554444443   23444555555555443 34444555555555


Q ss_pred             EEcCCcccCC--cccccCCCCCcEEEecCCCCC-ccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCc
Q 005744          285 LSLENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF  361 (679)
Q Consensus       285 L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~  361 (679)
                      |++++|.+..  |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.
T Consensus       169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~  247 (968)
T PLN00113        169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNN  247 (968)
T ss_pred             EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCce
Confidence            5555544433  444445555555555554443 34444445555555555443222233333 4444455555544443


Q ss_pred             ccceeccCCcCChhhhhcCCCCceEEeecCCCc-cCCccc-cccccceeEEEeCCc----ccCCCCCCCcceEEecCCCc
Q 005744          362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ-VMPQDL-VFVELERFRICIGDV----WSWSDGYETSKTLKLQLNNS  435 (679)
Q Consensus       362 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~----~~~~~~~~~l~~L~L~~~~~  435 (679)
                      +..       ..+..+.++++|+.|++++|.+. .+|..+ .+.+|+.|++..+..    +.++..+++|+.|+++++..
T Consensus       248 l~~-------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~  320 (968)
T PLN00113        248 LTG-------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF  320 (968)
T ss_pred             ecc-------ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence            321       11223334444444444444332 222222 333444444432221    11223333444444433322


Q ss_pred             ce-echhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeC---------------------
Q 005744          436 TY-LGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNS---------------------  493 (679)
Q Consensus       436 ~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~---------------------  493 (679)
                      .. .|.++.. +++|+.|++++|.....+|..+   +.+++|+.|++++|.....++..                     
T Consensus       321 ~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l---~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~  396 (968)
T PLN00113        321 TGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNL---GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI  396 (968)
T ss_pred             CCcCChhHhc-CCCCCEEECcCCCCcCcCChHH---hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccC
Confidence            21 1222222 3334444444433333333333   33333344443333211111000                     


Q ss_pred             CCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchh
Q 005744          494 DGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKL  573 (679)
Q Consensus       494 ~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~  573 (679)
                      ......+++|+.|++.+|.--..++       .....+++|+.|+++++ .+....+. ....+++|+.|++++|.-...
T Consensus       397 p~~~~~~~~L~~L~L~~n~l~~~~p-------~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~  467 (968)
T PLN00113        397 PKSLGACRSLRRVRLQDNSFSGELP-------SEFTKLPLVYFLDISNN-NLQGRINS-RKWDMPSLQMLSLARNKFFGG  467 (968)
T ss_pred             CHHHhCCCCCCEEECcCCEeeeECC-------hhHhcCCCCCEEECcCC-cccCccCh-hhccCCCCcEEECcCceeeee
Confidence            0111334455555555432111111       11234455555555543 23332221 123445555555555533222


Q ss_pred             hhccccc----------cccCCCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCccc
Q 005744          574 IVGKESE----------NSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNE  643 (679)
Q Consensus       574 l~~~~~~----------~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~  643 (679)
                      ++.....          ..........+..+++|++|++++|.-...+|..     +..+.+++.+....+.-...++..
T Consensus       468 ~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-----~~~l~~L~~L~Ls~N~l~~~~p~~  542 (968)
T PLN00113        468 LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE-----LSSCKKLVSLDLSHNQLSGQIPAS  542 (968)
T ss_pred             cCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH-----HcCccCCCEEECCCCcccccCChh
Confidence            2211000          0000000113456778888888776433344433     345566777777776655556555


Q ss_pred             cccCCCcceeecccccccc-cc
Q 005744          644 RVVFPSLKKLKLSSINVEK-IW  664 (679)
Q Consensus       644 ~~~~p~L~~L~l~~~~l~~-l~  664 (679)
                      ...+++|+.|++++|++.. +|
T Consensus       543 ~~~l~~L~~L~Ls~N~l~~~~p  564 (968)
T PLN00113        543 FSEMPVLSQLDLSQNQLSGEIP  564 (968)
T ss_pred             HhCcccCCEEECCCCcccccCC
Confidence            6678899999999997764 44

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=1.9e-30  Score=305.80  Aligned_cols=186  Identities=13%  Similarity=0.042  Sum_probs=109.3

Q ss_pred             hcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCC
Q 005744          447 KRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNE  526 (679)
Q Consensus       447 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~  526 (679)
                      ++|+.|++.+|.....+|..+   ..+++|+.|++++|.....++   .....+++|+.|++++|.-...++.       
T Consensus       404 ~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~n~~~~~~p~-------  470 (968)
T PLN00113        404 RSLRRVRLQDNSFSGELPSEF---TKLPLVYFLDISNNNLQGRIN---SRKWDMPSLQMLSLARNKFFGGLPD-------  470 (968)
T ss_pred             CCCCEEECcCCEeeeECChhH---hcCCCCCEEECcCCcccCccC---hhhccCCCCcEEECcCceeeeecCc-------
Confidence            444444444444333333333   344444455544443211111   1113455666666666433222221       


Q ss_pred             CccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCC
Q 005744          527 DDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLP  606 (679)
Q Consensus       527 ~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp  606 (679)
                       ....++|+.|++++| ++....+ ..+..+++|+.|++++|.-...++.             .+..+++|++|+|++|.
T Consensus       471 -~~~~~~L~~L~ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~-------------~~~~l~~L~~L~Ls~N~  534 (968)
T PLN00113        471 -SFGSKRLENLDLSRN-QFSGAVP-RKLGSLSELMQLKLSENKLSGEIPD-------------ELSSCKKLVSLDLSHNQ  534 (968)
T ss_pred             -ccccccceEEECcCC-ccCCccC-hhhhhhhccCEEECcCCcceeeCCh-------------HHcCccCCCEEECCCCc
Confidence             113467777777775 3443323 2456788888888888744444432             45689999999999976


Q ss_pred             CccccccCCCCCcccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccc-cccCC
Q 005744          607 QLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVE-KIWLN  666 (679)
Q Consensus       607 ~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~-~l~~~  666 (679)
                      -...++..     +..+++++.+....+.-...+|.....+++|+.|++++|++. .+|..
T Consensus       535 l~~~~p~~-----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        535 LSGQIPAS-----FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             ccccCChh-----HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence            44444433     345677888888887776677777778899999999999766 46644

>PLN03210 Resistant to P

Probab=99.94  E-value=1.1e-25  Score=265.42  Aligned_cols=444  Identities=18%  Similarity=0.240  Sum_probs=314.4

Q ss_pred             HhHHHHHhhcccccccchHHHHHHHHHHHHHHHHhccccccC---CCCCceEehhhHHHHHHHHHhcccE----eEEecc
Q 005744          126 DDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDG---DSEDHAKMHRIIHAIAVSIAAEKLL----FNIQNV  198 (679)
Q Consensus       126 ~~li~~wiaeg~i~~~~~~~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~mhdli~~l~~~~~~~e~~----~~~~~~  198 (679)
                      +..++.+++.++|+....    ...||+++++++..-..++.   ++.....-+.-+.+........+.+    +.....
T Consensus       469 ~~~l~~L~~ksLi~~~~~----~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~  544 (1153)
T PLN03210        469 NIGLKNLVDKSLIHVRED----IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEI  544 (1153)
T ss_pred             hhChHHHHhcCCEEEcCC----eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcc
Confidence            334777888899875432    24677777776533222221   2222333343344433322222221    111111


Q ss_pred             cchhhhhh--hhcCCCeEEEccCCCc-------ccCCccc-CC-cceeeeeeccCCcccCCCchhhcCCCCccEEEeCCC
Q 005744          199 ADLKEELD--KIDEAPTAISIPFRGI-------YELPERL-GF-LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGF  267 (679)
Q Consensus       199 ~~~~~~~~--~~~~~l~~l~l~~~~~-------~~l~~~~-~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  267 (679)
                      ..+..-..  ..+.+++.|.+..+..       ..+|..+ .+ ++||.|.+.++.+. .+|..+  ...+|+.|+++++
T Consensus       545 ~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s  621 (1153)
T PLN03210        545 DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGS  621 (1153)
T ss_pred             ceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCc
Confidence            11100011  5578888888866542       2355555 33 56999999988764 788775  5789999999999


Q ss_pred             cCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCC-CCCccchhhhcCCCCCEEcccCCccccccCccc
Q 005744          268 RFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHS-SIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNV  345 (679)
Q Consensus       268 ~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~  345 (679)
                      .+..+|..+..+++|++|+++++.... ++.++.+++|++|++++| .+..+|..++++++|++|++++|+.++.+|.. 
T Consensus       622 ~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-  700 (1153)
T PLN03210        622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-  700 (1153)
T ss_pred             cccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-
Confidence            999999999999999999999886444 667999999999999998 78899999999999999999999999999986 


Q ss_pred             ccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCC---ccc-----
Q 005744          346 ISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGD---VWS-----  417 (679)
Q Consensus       346 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~-----  417 (679)
                      + ++++|+.|++++|......+          ...++|+.|+++++.+..+|..+.+++|+.|.+....   .+.     
T Consensus       701 i-~l~sL~~L~Lsgc~~L~~~p----------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l  769 (1153)
T PLN03210        701 I-NLKSLYRLNLSGCSRLKSFP----------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPL  769 (1153)
T ss_pred             C-CCCCCCEEeCCCCCCccccc----------cccCCcCeeecCCCccccccccccccccccccccccchhhcccccccc
Confidence            3 89999999999985432111          1246789999999999999988888889888875422   111     


Q ss_pred             ---CCCCCCCcceEEecCCCc-ceechhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeC
Q 005744          418 ---WSDGYETSKTLKLQLNNS-TYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNS  493 (679)
Q Consensus       418 ---~~~~~~~l~~L~L~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  493 (679)
                         ....+++|+.|.|+++.. ..+|.++.. +++|+.|++++|..++.+|...    .+++|+.|++++|..+..++. 
T Consensus       770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~~L~~LP~~~----~L~sL~~L~Ls~c~~L~~~p~-  843 (1153)
T PLN03210        770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQN-LHKLEHLEIENCINLETLPTGI----NLESLESLDLSGCSRLRTFPD-  843 (1153)
T ss_pred             chhhhhccccchheeCCCCCCccccChhhhC-CCCCCEEECCCCCCcCeeCCCC----CccccCEEECCCCCccccccc-
Confidence               122356899999998754 446777776 7999999999999888888754    589999999999998776543 


Q ss_pred             CCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchh
Q 005744          494 DGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKL  573 (679)
Q Consensus       494 ~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~  573 (679)
                           ..++|+.|++.+ +.++.+|..       .+.+++|+.|++.+|++++.++.  ....+++|+.+++++|++|+.
T Consensus       844 -----~~~nL~~L~Ls~-n~i~~iP~s-------i~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~  908 (1153)
T PLN03210        844 -----ISTNISDLNLSR-TGIEEVPWW-------IEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTE  908 (1153)
T ss_pred             -----cccccCEeECCC-CCCccChHH-------HhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCccccc
Confidence                 357899999998 678776543       56899999999999999999864  356889999999999999987


Q ss_pred             hhccccccccCCCCccccccccccceeeccCCCCcc
Q 005744          574 IVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLT  609 (679)
Q Consensus       574 l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~  609 (679)
                      +...................+|....+.+.+|.+|.
T Consensus       909 ~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~  944 (1153)
T PLN03210        909 ASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD  944 (1153)
T ss_pred             ccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence            643211100000000011245566666777777665

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.94  E-value=1.7e-27  Score=238.70  Aligned_cols=386  Identities=19%  Similarity=0.209  Sum_probs=285.4

Q ss_pred             hhhhcCCCeEEEccCCCcccCCcc----cCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCc
Q 005744          205 LDKIDEAPTAISIPFRGIYELPER----LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLI  280 (679)
Q Consensus       205 ~~~~~~~l~~l~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~  280 (679)
                      |....-..+-++.+++.++.+...    +-.+.-++|++++|.+. .+.-.+|.++++|+.+++.+|.++.+|...+...
T Consensus        47 pa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sg  125 (873)
T KOG4194|consen   47 PATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESG  125 (873)
T ss_pred             CCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhccccccccc
Confidence            444455677788888877665322    13456678999888877 4555566889999999999999999998777778


Q ss_pred             CCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEc
Q 005744          281 NLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM  357 (679)
Q Consensus       281 ~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l  357 (679)
                      ||+.|+|.+|.|..  -+.+..++.|+.|||+.|.|+++|.. +..=.++++|+|++ +.++.+..+.|..+.+|-+|.+
T Consensus       126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkL  204 (873)
T KOG4194|consen  126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKL  204 (873)
T ss_pred             ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeec
Confidence            89999999998887  57788888999999999988888753 55557888999988 7888888887888888888888


Q ss_pred             cCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcce
Q 005744          358 GNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTY  437 (679)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~  437 (679)
                      +.|.++.       -....+++|++|+.|++..|.+....                  +..+..+++++.++|..|....
T Consensus       205 srNritt-------Lp~r~Fk~L~~L~~LdLnrN~irive------------------~ltFqgL~Sl~nlklqrN~I~k  259 (873)
T KOG4194|consen  205 SRNRITT-------LPQRSFKRLPKLESLDLNRNRIRIVE------------------GLTFQGLPSLQNLKLQRNDISK  259 (873)
T ss_pred             ccCcccc-------cCHHHhhhcchhhhhhccccceeeeh------------------hhhhcCchhhhhhhhhhcCccc
Confidence            8887653       23356777888888888877654321                  1234455666667777777777


Q ss_pred             echhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeecccccccccc
Q 005744          438 LGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKV  517 (679)
Q Consensus       438 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~  517 (679)
                      +.++++..+.++++|++..|.....--.++   -+++.|+.|+++.|. +..+-. ..+ ...++|+.|+++. ++++++
T Consensus       260 L~DG~Fy~l~kme~l~L~~N~l~~vn~g~l---fgLt~L~~L~lS~Na-I~rih~-d~W-sftqkL~~LdLs~-N~i~~l  332 (873)
T KOG4194|consen  260 LDDGAFYGLEKMEHLNLETNRLQAVNEGWL---FGLTSLEQLDLSYNA-IQRIHI-DSW-SFTQKLKELDLSS-NRITRL  332 (873)
T ss_pred             ccCcceeeecccceeecccchhhhhhcccc---cccchhhhhccchhh-hheeec-chh-hhcccceeEeccc-cccccC
Confidence            777777778888999988877554444556   568889999998885 333211 111 3568999999998 888888


Q ss_pred             ccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCcccccccccc
Q 005744          518 CDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKL  597 (679)
Q Consensus       518 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L  597 (679)
                      +.+.+.      .+..|++|.++. +++..+ ....+..+++|++|+++++ .+.-....         ....+..+|+|
T Consensus       333 ~~~sf~------~L~~Le~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~N-~ls~~IED---------aa~~f~gl~~L  394 (873)
T KOG4194|consen  333 DEGSFR------VLSQLEELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRSN-ELSWCIED---------AAVAFNGLPSL  394 (873)
T ss_pred             ChhHHH------HHHHhhhhcccc-cchHHH-HhhHHHHhhhhhhhcCcCC-eEEEEEec---------chhhhccchhh
Confidence            766544      788899999988 788888 5567888999999999876 33322211         11256689999


Q ss_pred             ceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccccccCCCcccc
Q 005744          598 HFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAI  671 (679)
Q Consensus       598 ~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~~~~~~  671 (679)
                      +.|.+.+ ++|++++...                            ...|++|+.|++.+|.+.+|-+++|..+
T Consensus       395 rkL~l~g-Nqlk~I~krA----------------------------fsgl~~LE~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  395 RKLRLTG-NQLKSIPKRA----------------------------FSGLEALEHLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             hheeecC-ceeeecchhh----------------------------hccCcccceecCCCCcceeecccccccc
Confidence            9999998 6888877532                            2356899999999999999988888643

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.92  E-value=7.8e-26  Score=226.80  Aligned_cols=336  Identities=18%  Similarity=0.240  Sum_probs=180.9

Q ss_pred             hcCCCeEEEccCCCcccCCcc--cCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCE
Q 005744          208 IDEAPTAISIPFRGIYELPER--LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRT  284 (679)
Q Consensus       208 ~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~  284 (679)
                      .+...+.|++++|++..+...  .++++|+.+.+.+|.+. .+|... +...+|+.|+|.+|.|+++ .+++..++.||.
T Consensus        76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrs  153 (873)
T KOG4194|consen   76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRS  153 (873)
T ss_pred             CccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence            345566677777766554433  26666666666666654 555522 4445566666666666655 345666666666


Q ss_pred             EEcCCcccCC--cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCc
Q 005744          285 LSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF  361 (679)
Q Consensus       285 L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~  361 (679)
                      |||+.|.+.+  .+++.+-.++++|+|++|.|+.+-. .|..+.+|..|.|+. ++++.+|...|.+|++|+.|++..|.
T Consensus       154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccc
Confidence            6666666666  3555555666666666666665543 355666666666666 56666666666666666666666665


Q ss_pred             ccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEEEeCCcc----cCCCCCCCcceEEecCCCc
Q 005744          362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDVW----SWSDGYETSKTLKLQLNNS  435 (679)
Q Consensus       362 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~----~~~~~~~~l~~L~L~~~~~  435 (679)
                      +...       ....+..|.+|+.|.+..|++..+.+.+  .+.++++|++..+.+.    .|+-++..|+.|+|+.|..
T Consensus       233 iriv-------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI  305 (873)
T KOG4194|consen  233 IRIV-------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI  305 (873)
T ss_pred             eeee-------hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence            4311       1123445555555566666555555554  5556666665544432    2455555566666655544


Q ss_pred             cee--chhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeecccccc
Q 005744          436 TYL--GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLIN  513 (679)
Q Consensus       436 ~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~  513 (679)
                      ..+  ..|-  ..++|+.|++++|....-.+..|   ..+..|++|.|+.|. +..+-  ...+..+.+|++|++.+ +.
T Consensus       306 ~rih~d~Ws--ftqkL~~LdLs~N~i~~l~~~sf---~~L~~Le~LnLs~Ns-i~~l~--e~af~~lssL~~LdLr~-N~  376 (873)
T KOG4194|consen  306 QRIHIDSWS--FTQKLKELDLSSNRITRLDEGSF---RVLSQLEELNLSHNS-IDHLA--EGAFVGLSSLHKLDLRS-NE  376 (873)
T ss_pred             heeecchhh--hcccceeEeccccccccCChhHH---HHHHHhhhhcccccc-hHHHH--hhHHHHhhhhhhhcCcC-Ce
Confidence            333  2222  23556666665554433333333   445555666665553 22221  12234455566666555 33


Q ss_pred             ccccc-cCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEccc
Q 005744          514 LEKVC-DGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDC  568 (679)
Q Consensus       514 L~~~~-~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c  568 (679)
                      +...- ++..+    ...+++|+.|.+.+ ++++.+ +...+..+++||+|++.++
T Consensus       377 ls~~IEDaa~~----f~gl~~LrkL~l~g-Nqlk~I-~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  377 LSWCIEDAAVA----FNGLPSLRKLRLTG-NQLKSI-PKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             EEEEEecchhh----hccchhhhheeecC-ceeeec-chhhhccCcccceecCCCC
Confidence            33211 11111    22355666666655 456655 2334555666666666554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.92  E-value=3.4e-27  Score=238.00  Aligned_cols=341  Identities=19%  Similarity=0.246  Sum_probs=170.3

Q ss_pred             CCCeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCC--cCCccccCCcCCCEEE
Q 005744          210 EAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH--SLPSSLGCLINLRTLS  286 (679)
Q Consensus       210 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~  286 (679)
                      ..++.|-+....+..+|+.+ .+.+|++|.+..|++. .+.... +.++.||.+++..|+++  .+|..|..+..|.+||
T Consensus        32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD  109 (1255)
T KOG0444|consen   32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD  109 (1255)
T ss_pred             hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence            34444444444444444444 4444444444444433 222222 44445555555555443  3455555555555555


Q ss_pred             cCCcccCC-cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccc
Q 005744          287 LENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQW  364 (679)
Q Consensus       287 L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~  364 (679)
                      |++|++.+ |..+...+++-+|+|++|+|..+|.. +.+|+.|-+|+|++ +.+..+|+. +..|.+|++|.+++|.+..
T Consensus       110 LShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~h  187 (1255)
T KOG0444|consen  110 LSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKLSNNPLNH  187 (1255)
T ss_pred             cchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhcCCChhhH
Confidence            55555544 55555555555555555555555543 23445555555554 445555544 4445555555555543321


Q ss_pred             eeccCCcCChhhhhcCCCCceEEeecCCC--ccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhH
Q 005744          365 KVEGQSNASLGELKQLSRLTTLEVHIPDA--QVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGM  442 (679)
Q Consensus       365 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~  442 (679)
                             ..+..|..++.|+.|.+++++-  ..+                   +.++..+.+|..++++.+.....|+.+
T Consensus       188 -------fQLrQLPsmtsL~vLhms~TqRTl~N~-------------------Ptsld~l~NL~dvDlS~N~Lp~vPecl  241 (1255)
T KOG0444|consen  188 -------FQLRQLPSMTSLSVLHMSNTQRTLDNI-------------------PTSLDDLHNLRDVDLSENNLPIVPECL  241 (1255)
T ss_pred             -------HHHhcCccchhhhhhhcccccchhhcC-------------------CCchhhhhhhhhccccccCCCcchHHH
Confidence                   1122333334444444444332  233                   334445555666666666666666666


Q ss_pred             HHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcc
Q 005744          443 KMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKV  522 (679)
Q Consensus       443 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~  522 (679)
                      .. +++|+.|++++|.. +.+....   +.+.+|+.|+++.|. ++.++.   ....+++|+.|.+.+ ++|.-   ..+
T Consensus       242 y~-l~~LrrLNLS~N~i-teL~~~~---~~W~~lEtLNlSrNQ-Lt~LP~---avcKL~kL~kLy~n~-NkL~F---eGi  308 (1255)
T KOG0444|consen  242 YK-LRNLRRLNLSGNKI-TELNMTE---GEWENLETLNLSRNQ-LTVLPD---AVCKLTKLTKLYANN-NKLTF---EGI  308 (1255)
T ss_pred             hh-hhhhheeccCcCce-eeeeccH---HHHhhhhhhccccch-hccchH---HHhhhHHHHHHHhcc-Ccccc---cCC
Confidence            55 56666666666543 3333222   556666666666664 333322   224566666666655 44432   122


Q ss_pred             cCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeec
Q 005744          523 RLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKL  602 (679)
Q Consensus       523 ~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l  602 (679)
                      |  +++|.+.+|+.+...+ ++|+-+ |. +++.|+.|+.|.+. |+.|-.+|.             +++.+|-|+.|++
T Consensus       309 P--SGIGKL~~Levf~aan-N~LElV-PE-glcRC~kL~kL~L~-~NrLiTLPe-------------aIHlL~~l~vLDl  369 (1255)
T KOG0444|consen  309 P--SGIGKLIQLEVFHAAN-NKLELV-PE-GLCRCVKLQKLKLD-HNRLITLPE-------------AIHLLPDLKVLDL  369 (1255)
T ss_pred             c--cchhhhhhhHHHHhhc-cccccC-ch-hhhhhHHHHHhccc-ccceeechh-------------hhhhcCCcceeec
Confidence            2  3456666666666655 455544 32 45666666666665 334555543             4556666666666


Q ss_pred             cCCCCccccc
Q 005744          603 QHLPQLTSSG  612 (679)
Q Consensus       603 ~~cp~L~~l~  612 (679)
                      ++.|+|..-|
T Consensus       370 reNpnLVMPP  379 (1255)
T KOG0444|consen  370 RENPNLVMPP  379 (1255)
T ss_pred             cCCcCccCCC
Confidence            6666666433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.91  E-value=1.6e-26  Score=233.08  Aligned_cols=347  Identities=19%  Similarity=0.218  Sum_probs=262.4

Q ss_pred             hcCCCeEEEccCCCc--ccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCE
Q 005744          208 IDEAPTAISIPFRGI--YELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRT  284 (679)
Q Consensus       208 ~~~~l~~l~l~~~~~--~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~  284 (679)
                      .++-+|.+++++|++  ..+|... .++.++.|.+....+. .+|+.. +.+.+|+.|.+++|++.++-..++.|+.||.
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLRS   82 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhHH
Confidence            345678888888888  4577777 7888888888776654 678776 7888888888888888888888888888888


Q ss_pred             EEcCCcccCC---cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCc
Q 005744          285 LSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF  361 (679)
Q Consensus       285 L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~  361 (679)
                      ++++.|++..   |..|.+|..|.+|||++|++++.|..+..-+++-.|+|++ +++..+|...+-+|+.|-.|++++|.
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccch
Confidence            8888888765   7888888888888888888888888888888888888888 77888888877888888888888886


Q ss_pred             ccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCC--cceec
Q 005744          362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNN--STYLG  439 (679)
Q Consensus       362 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~--~~~~~  439 (679)
                      +.        ..+.....+.+|++|.+++|.+..+       +|+           .++.+.+|+.|++++..  ...+|
T Consensus       162 Le--------~LPPQ~RRL~~LqtL~Ls~NPL~hf-------QLr-----------QLPsmtsL~vLhms~TqRTl~N~P  215 (1255)
T KOG0444|consen  162 LE--------MLPPQIRRLSMLQTLKLSNNPLNHF-------QLR-----------QLPSMTSLSVLHMSNTQRTLDNIP  215 (1255)
T ss_pred             hh--------hcCHHHHHHhhhhhhhcCCChhhHH-------HHh-----------cCccchhhhhhhcccccchhhcCC
Confidence            64        4556778888888888887754321       111           12344555556666532  23456


Q ss_pred             hhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeecccccccccccc
Q 005744          440 YGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCD  519 (679)
Q Consensus       440 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~  519 (679)
                      ..+.. +.+|..++++.|. +..+|..+   -.+++|+.|+|++|. ++.+.   ...+.-.+|++|+++. +.|+.+|.
T Consensus       216 tsld~-l~NL~dvDlS~N~-Lp~vPecl---y~l~~LrrLNLS~N~-iteL~---~~~~~W~~lEtLNlSr-NQLt~LP~  285 (1255)
T KOG0444|consen  216 TSLDD-LHNLRDVDLSENN-LPIVPECL---YKLRNLRRLNLSGNK-ITELN---MTEGEWENLETLNLSR-NQLTVLPD  285 (1255)
T ss_pred             Cchhh-hhhhhhccccccC-CCcchHHH---hhhhhhheeccCcCc-eeeee---ccHHHHhhhhhhcccc-chhccchH
Confidence            66665 7899999998765 56677777   678999999999985 44432   2335677899999999 88888765


Q ss_pred             CcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccce
Q 005744          520 GKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHF  599 (679)
Q Consensus       520 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~  599 (679)
                      .       ...+++|+.|.+.+ ++|+--...++++.|.+|+++...++ .|+-+|.             ++..+++|+.
T Consensus       286 a-------vcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPE-------------glcRC~kL~k  343 (1255)
T KOG0444|consen  286 A-------VCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPE-------------GLCRCVKLQK  343 (1255)
T ss_pred             H-------HhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhcc-ccccCch-------------hhhhhHHHHH
Confidence            4       56788999999877 56654333357889999999988865 6777764             5668899999


Q ss_pred             eeccCCCCccccccCCC
Q 005744          600 LKLQHLPQLTSSGFDLE  616 (679)
Q Consensus       600 L~l~~cp~L~~l~~~~~  616 (679)
                      |.+ +|+.|..+|..++
T Consensus       344 L~L-~~NrLiTLPeaIH  359 (1255)
T KOG0444|consen  344 LKL-DHNRLITLPEAIH  359 (1255)
T ss_pred             hcc-cccceeechhhhh
Confidence            998 4678888887765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.91  E-value=7.2e-27  Score=224.32  Aligned_cols=413  Identities=18%  Similarity=0.193  Sum_probs=236.6

Q ss_pred             CeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCc
Q 005744          212 PTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC  290 (679)
Q Consensus       212 l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~  290 (679)
                      +..+.+++|.+..+.+.+ .+..+.+|++..|... .+|+++ +.+..+..|++++|.+..+|..++.+..|+.|+.+.|
T Consensus        47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n  124 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN  124 (565)
T ss_pred             hhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence            445555666665555544 5666666666666655 455554 5566666666666666666666666666666666666


Q ss_pred             ccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccC
Q 005744          291 LVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ  369 (679)
Q Consensus       291 ~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~  369 (679)
                      .+.+ +++++.+..|+.|+..+|+++++|.+++.+.+|..|++.+ ++++.+|+..+. ++.|++|+...|...      
T Consensus       125 ~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~-m~~L~~ld~~~N~L~------  196 (565)
T KOG0472|consen  125 ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIA-MKRLKHLDCNSNLLE------  196 (565)
T ss_pred             ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHHH-HHHHHhcccchhhhh------
Confidence            6666 6666666666666666666666666666666666666666 555666655333 666666665555432      


Q ss_pred             CcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCccc----CCCCCCCcceEEecCCCcceechhHHHH
Q 005744          370 SNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWS----WSDGYETSKTLKLQLNNSTYLGYGMKML  445 (679)
Q Consensus       370 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~l~~L~L~~~~~~~~~~~~~~~  445 (679)
                        ..+++++.+.+|..|+++.|++..+|+.-++..|.+|++..+.+..    -...++.+..|+|+.+.....|+.+.. 
T Consensus       197 --tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl-  273 (565)
T KOG0472|consen  197 --TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL-  273 (565)
T ss_pred             --cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHH-
Confidence              3445556666666666666666666643355555555554443211    233566777788888888888888775 


Q ss_pred             hhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEe---------------------C-------CC--
Q 005744          446 LKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILN---------------------S-------DG--  495 (679)
Q Consensus       446 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~---------------------~-------~~--  495 (679)
                      +.+|++|+++++. +..+|..+   +++ .|+.|.+.||+-- .+..                     +       ..  
T Consensus       274 LrsL~rLDlSNN~-is~Lp~sL---gnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~  347 (565)
T KOG0472|consen  274 LRSLERLDLSNND-ISSLPYSL---GNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA  347 (565)
T ss_pred             hhhhhhhcccCCc-cccCCccc---ccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence            6889999998875 46677777   777 8888888888721 1000                     0       00  


Q ss_pred             ---c------cccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCcc--------------------
Q 005744          496 ---R------VGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVK--------------------  546 (679)
Q Consensus       496 ---~------~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~--------------------  546 (679)
                         .      .......+.|.+++ .+++.+|...|.    .+.-.-....+++. +++.                    
T Consensus       348 ~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfe----a~~~~~Vt~Vnfsk-NqL~elPk~L~~lkelvT~l~lsn  421 (565)
T KOG0472|consen  348 MTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFE----AAKSEIVTSVNFSK-NQLCELPKRLVELKELVTDLVLSN  421 (565)
T ss_pred             CCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHH----HhhhcceEEEeccc-chHhhhhhhhHHHHHHHHHHHhhc
Confidence               0      02233677777777 677777655443    11111122222222 1111                    


Q ss_pred             ---ccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCccccccCCCCCc----
Q 005744          547 ---HLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPT----  619 (679)
Q Consensus       547 ---~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~----  619 (679)
                         ++++ ..+..+++|..|+++++ -+.++|.+             +..+-.||.|+|+.. ..+.+|...+.|.    
T Consensus       422 n~isfv~-~~l~~l~kLt~L~L~NN-~Ln~LP~e-------------~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEt  485 (565)
T KOG0472|consen  422 NKISFVP-LELSQLQKLTFLDLSNN-LLNDLPEE-------------MGSLVRLQTLNLSFN-RFRMLPECLYELQTLET  485 (565)
T ss_pred             Cccccch-HHHHhhhcceeeecccc-hhhhcchh-------------hhhhhhhheeccccc-ccccchHHHhhHHHHHH
Confidence               1212 23455666666666654 45555542             234555666666653 3444443222111    


Q ss_pred             ---------------ccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccccccCCC
Q 005744          620 ---------------NTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNS  667 (679)
Q Consensus       620 ---------------l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~~  667 (679)
                                     +.++..+.++...+ +++.++|+..+...+|+.|+++||.++ .|+.+
T Consensus       486 llas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~  546 (565)
T KOG0472|consen  486 LLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR-QPRHQ  546 (565)
T ss_pred             HHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCccC-CCHHH
Confidence                           22333334443332 456677777777888888888888877 66554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.89  E-value=8e-26  Score=217.19  Aligned_cols=355  Identities=23%  Similarity=0.274  Sum_probs=191.6

Q ss_pred             hhcCCCeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEE
Q 005744          207 KIDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTL  285 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L  285 (679)
                      .....+..++.++|++..+|+.+ ...+++.+++++|.+. .+|+++ +.+..|..|+..+|++..+|..++++..|..|
T Consensus        88 g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l  165 (565)
T KOG0472|consen   88 GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDLEDLDATNNQISSLPEDMVNLSKLSKL  165 (565)
T ss_pred             HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhhhhhhccccccccCchHHHHHHHHHHh
Confidence            44444555555555555555544 4555555555555544 344443 44555555555555555555555555555555


Q ss_pred             EcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccc
Q 005744          286 SLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQW  364 (679)
Q Consensus       286 ~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~  364 (679)
                      ++.+|.+.. |+..-+++.|++||...|-++.+|+.++.+.+|..|++.. +++..+|.  |+.+..|.+|+++.|++. 
T Consensus       166 ~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPe--f~gcs~L~Elh~g~N~i~-  241 (565)
T KOG0472|consen  166 DLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR-NKIRFLPE--FPGCSLLKELHVGENQIE-  241 (565)
T ss_pred             hccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh-cccccCCC--CCccHHHHHHHhcccHHH-
Confidence            555555555 4433335555555555555555555555555555555555 45555552  444444444444444332 


Q ss_pred             eeccCCcCCh-hhhhcCCCCceEEeecCCCccCCccc-cccccceeEEEeCCccc---CCCCCCCcceEEecCCC-----
Q 005744          365 KVEGQSNASL-GELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWS---WSDGYETSKTLKLQLNN-----  434 (679)
Q Consensus       365 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~---~~~~~~~l~~L~L~~~~-----  434 (679)
                             ... +-++++.+|..|+++.|+++++|+.+ .+.+|+.|+++++++..   .++.+ .|+.|.+.++.     
T Consensus       242 -------~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiR  313 (565)
T KOG0472|consen  242 -------MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIR  313 (565)
T ss_pred             -------hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHH
Confidence                   111 22346667777777777777777766 55566666665554322   22222 23333333322     


Q ss_pred             ------------------------------------------------------------cceechhHHHH---------
Q 005744          435 ------------------------------------------------------------STYLGYGMKML---------  445 (679)
Q Consensus       435 ------------------------------------------------------------~~~~~~~~~~~---------  445 (679)
                                                                                  ....|+.++..         
T Consensus       314 r~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~V  393 (565)
T KOG0472|consen  314 REIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSV  393 (565)
T ss_pred             HHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEE
Confidence                                                                        22222222110         


Q ss_pred             ----------------hhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeecc
Q 005744          446 ----------------LKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLH  509 (679)
Q Consensus       446 ----------------l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~  509 (679)
                                      +..+.+.-+..+..+..+|..+   ..+++|..|++++|. +..++.   ..+.+..|+.|+++
T Consensus       394 nfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l---~~l~kLt~L~L~NN~-Ln~LP~---e~~~lv~Lq~LnlS  466 (565)
T KOG0472|consen  394 NFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLEL---SQLQKLTFLDLSNNL-LNDLPE---EMGSLVRLQTLNLS  466 (565)
T ss_pred             ecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHH---Hhhhcceeeecccch-hhhcch---hhhhhhhhheeccc
Confidence                            1112111122222333344444   567888888887774 333332   23456668888887


Q ss_pred             ccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCcc
Q 005744          510 NLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSI  589 (679)
Q Consensus       510 ~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~  589 (679)
                      . +.++.+|...       -....|+.+-.++ +++..+++ +++.++.+|.+|++.++ .+..+|.             
T Consensus       467 ~-NrFr~lP~~~-------y~lq~lEtllas~-nqi~~vd~-~~l~nm~nL~tLDL~nN-dlq~IPp-------------  522 (565)
T KOG0472|consen  467 F-NRFRMLPECL-------YELQTLETLLASN-NQIGSVDP-SGLKNMRNLTTLDLQNN-DLQQIPP-------------  522 (565)
T ss_pred             c-cccccchHHH-------hhHHHHHHHHhcc-ccccccCh-HHhhhhhhcceeccCCC-chhhCCh-------------
Confidence            7 5665554321       1122344444443 67777744 57889999999999866 7888875             


Q ss_pred             ccccccccceeeccCCC
Q 005744          590 SGVYFRKLHFLKLQHLP  606 (679)
Q Consensus       590 ~l~~l~~L~~L~l~~cp  606 (679)
                      .++++.+|++|.|.+.|
T Consensus       523 ~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  523 ILGNMTNLRHLELDGNP  539 (565)
T ss_pred             hhccccceeEEEecCCc
Confidence            56799999999999976

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.87  E-value=6.9e-24  Score=224.20  Aligned_cols=399  Identities=21%  Similarity=0.261  Sum_probs=234.0

Q ss_pred             CeEEEccCCCcccCCccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCC
Q 005744          212 PTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN  289 (679)
Q Consensus       212 l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~  289 (679)
                      +.++++..|.+-..|-..  +.-+|++|+++.|.+. ..|..+ ..+.+|+.|+++.|.+..+|.+++++.+|++|.|.+
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~  100 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN  100 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheecc
Confidence            556666666554433211  3444777777776654 566655 667777777777777777777777777777777777


Q ss_pred             cccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccc---------------cCCCCCc
Q 005744          290 CLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVI---------------SNLTRLE  353 (679)
Q Consensus       290 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l---------------~~l~~L~  353 (679)
                      |.+.. |.++..+++|++||+++|.+..+|.-+..++.+..+..++|..+..++...+               .....++
T Consensus       101 n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~  180 (1081)
T KOG0618|consen  101 NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLT  180 (1081)
T ss_pred             chhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhh
Confidence            77766 7777777777777777777777777777777777777776433333322110               0011122


Q ss_pred             E-EEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCC--------------------ccccccccceeEEEe
Q 005744          354 E-LYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMP--------------------QDLVFVELERFRICI  412 (679)
Q Consensus       354 ~-L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--------------------~~~~~~~L~~L~l~~  412 (679)
                      + |++.+|.+.          ...+..+.+|+.+....|++..+.                    ......+|+.+++..
T Consensus       181 ~~ldLr~N~~~----------~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~  250 (1081)
T KOG0618|consen  181 HQLDLRYNEME----------VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISH  250 (1081)
T ss_pred             eeeecccchhh----------hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecch
Confidence            2 333333221          123334444444444333322111                    001223344444432


Q ss_pred             CC---cccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeE
Q 005744          413 GD---VWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILH  489 (679)
Q Consensus       413 ~~---~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~  489 (679)
                      +.   .++|...+.+++.+....+....+|..+.. ..+|+.|.+..|. ++.+|...   ..+.+|++|+|..|. +..
T Consensus       251 n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~-~~~L~~l~~~~ne-l~yip~~l---e~~~sL~tLdL~~N~-L~~  324 (1081)
T KOG0618|consen  251 NNLSNLPEWIGACANLEALNANHNRLVALPLRISR-ITSLVSLSAAYNE-LEYIPPFL---EGLKSLRTLDLQSNN-LPS  324 (1081)
T ss_pred             hhhhcchHHHHhcccceEecccchhHHhhHHHHhh-hhhHHHHHhhhhh-hhhCCCcc---cccceeeeeeehhcc-ccc
Confidence            22   234555555555555555555555555544 3556666655553 34555555   568888888888774 333


Q ss_pred             EEeCCC-----------------------ccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCcc
Q 005744          490 ILNSDG-----------------------RVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVK  546 (679)
Q Consensus       490 ~~~~~~-----------------------~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~  546 (679)
                      +++...                       ....++.|+.|++.+ +.|++-+...      ...|++||.|++++ ++|.
T Consensus       325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~------l~~~~hLKVLhLsy-NrL~  396 (1081)
T KOG0618|consen  325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPV------LVNFKHLKVLHLSY-NRLN  396 (1081)
T ss_pred             cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhh------hccccceeeeeecc-cccc
Confidence            332110                       013456677777777 6666543322      45889999999999 7888


Q ss_pred             ccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCccccccCCCCCcccCCCCC
Q 005744          547 HLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNP  626 (679)
Q Consensus       547 ~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l  626 (679)
                      .+ |...+.+++.||+|+++++ +|+.++.             .+..++.|++|...+ +.|..+|.      +..++.+
T Consensus       397 ~f-pas~~~kle~LeeL~LSGN-kL~~Lp~-------------tva~~~~L~tL~ahs-N~l~~fPe------~~~l~qL  454 (1081)
T KOG0618|consen  397 SF-PASKLRKLEELEELNLSGN-KLTTLPD-------------TVANLGRLHTLRAHS-NQLLSFPE------LAQLPQL  454 (1081)
T ss_pred             cC-CHHHHhchHHhHHHhcccc-hhhhhhH-------------HHHhhhhhHHHhhcC-Cceeechh------hhhcCcc
Confidence            88 5567889999999999987 7888874             344777888887765 45666653      2344445


Q ss_pred             ccccCCCCCCCccCc-cccccCCCcceeeccccc
Q 005744          627 GIIAEGDPKDFTSLF-NERVVFPSLKKLKLSSIN  659 (679)
Q Consensus       627 ~~~~~~~~~~l~~~~-~~~~~~p~L~~L~l~~~~  659 (679)
                      +.+... |++++... +....-|+|+.|+++||.
T Consensus       455 ~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  455 KVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             eEEecc-cchhhhhhhhhhCCCcccceeeccCCc
Confidence            555443 34443332 223334799999999983

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.81  E-value=7e-21  Score=192.24  Aligned_cols=133  Identities=32%  Similarity=0.510  Sum_probs=108.6

Q ss_pred             CCceeccCCCHHHHHHHHHHHhCCCC--CCCChHHHHHHHHHHhCCcchHHHHHHHHhcCC-ChHHHHHHHHHhhccCCC
Q 005744            7 SEDFLDWLLSNEEASHLFEKIVGHSA--KKSDFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWKDAVNQLSNSNPR   83 (679)
Q Consensus         7 ~~~~~~~~L~~~~~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~-~~~~W~~~~~~l~~~~~~   83 (679)
                      ..+|+|++|+++||++||++.++...  .++.+++.+++|+++|+|+||||+++|++|+.+ +..+|+++++++.+....
T Consensus       149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~  228 (287)
T PF00931_consen  149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE  228 (287)
T ss_dssp             EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            57899999999999999999998433  456668899999999999999999999999754 889999999998776642


Q ss_pred             ccccccc-ccceeeeccccCChhhHHHHHHhccccCCCCcccHHhHHHHHhhccccccc
Q 005744           84 KIQGMDA-DLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNA  141 (679)
Q Consensus        84 ~~~~~~~-~~~~l~~SY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wiaeg~i~~~  141 (679)
                       ..+... ...++.+||+.||.+ +|.||+|||+||+++.|+++.++++|+++|||+..
T Consensus       229 -~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~  285 (287)
T PF00931_consen  229 -SRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK  285 (287)
T ss_dssp             -SSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred             -cccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence             222222 388999999999997 99999999999999999999999999999999764

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.80  E-value=1.3e-21  Score=207.08  Aligned_cols=342  Identities=21%  Similarity=0.235  Sum_probs=214.7

Q ss_pred             cCCCeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEc
Q 005744          209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL  287 (679)
Q Consensus       209 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L  287 (679)
                      .-+++.|++++|.+...|..+ .+++|+.|.++.|.+. ..|.+. .++++|++|.|.+|.+..+|.++..+.+|++|++
T Consensus        44 ~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ldl  121 (1081)
T KOG0618|consen   44 RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDL  121 (1081)
T ss_pred             eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhh-hhhhcchhheeccchhhcCchhHHhhhccccccc
Confidence            334999999999999999988 8999999999999876 778665 8999999999999999999999999999999999


Q ss_pred             CCcccCC-cccccCCCCCcEEEecCC-CCCccc-------------------hhhhcCCCCCEEcccCCccccccCcccc
Q 005744          288 ENCLVVD-VAIIGDLKKLEILSLKHS-SIEQLP-------------------REIGQLTCLKLLDLSNCSKLKEIRPNVI  346 (679)
Q Consensus       288 ~~~~~~~-~~~i~~L~~L~~L~l~~~-~l~~lp-------------------~~i~~L~~L~~L~l~~~~~l~~lp~~~l  346 (679)
                      +.|.+.. |..+..+..+..++.++| ++..++                   .++..++.  .|+|+++ .+..+.   +
T Consensus       122 S~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N-~~~~~d---l  195 (1081)
T KOG0618|consen  122 SFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYN-EMEVLD---L  195 (1081)
T ss_pred             chhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccc-hhhhhh---h
Confidence            9999998 999999999999999988 433332                   22233333  3666663 222211   3


Q ss_pred             cCCCCCcEEEccCCccccee-ccCCc----------CChhhhhcCCCCceEEeecCCCccCCccc-cccccceeEEEeCC
Q 005744          347 SNLTRLEELYMGNSFTQWKV-EGQSN----------ASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGD  414 (679)
Q Consensus       347 ~~l~~L~~L~l~~~~~~~~~-~~~~~----------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~  414 (679)
                      ..+.+|+.+....|.+.... .+...          ...-.-..-.+|++++++.+.+..+|+++ .+.+|+.+.+..+.
T Consensus       196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~  275 (1081)
T KOG0618|consen  196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR  275 (1081)
T ss_pred             hhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchh
Confidence            34444444443333322110 00000          00000011245677777777777777665 66666666553222


Q ss_pred             --------------------------cccCCCCCCCcceEEecCCCcceechhHHHHhhc-ccccccccccCcccccccc
Q 005744          415 --------------------------VWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKR-TEDLHLDELAGFKNVVHEL  467 (679)
Q Consensus       415 --------------------------~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~  467 (679)
                                                ++....+.+.+++|+|..+....+|+.....+.. |..|..+.+.. ...|. .
T Consensus       276 l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l-~~lp~-~  353 (1081)
T KOG0618|consen  276 LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKL-STLPS-Y  353 (1081)
T ss_pred             HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccc-ccccc-c
Confidence                                      2234556778889999888888888755543332 55555544332 22221 2


Q ss_pred             cchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccc
Q 005744          468 DDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKH  547 (679)
Q Consensus       468 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~  547 (679)
                      .. ..++.|+.|++.+|..-...   .+....++.|+.|+++. +.|.++|...+      ..++.|++|++++ ++|+.
T Consensus       354 ~e-~~~~~Lq~LylanN~Ltd~c---~p~l~~~~hLKVLhLsy-NrL~~fpas~~------~kle~LeeL~LSG-NkL~~  421 (1081)
T KOG0618|consen  354 EE-NNHAALQELYLANNHLTDSC---FPVLVNFKHLKVLHLSY-NRLNSFPASKL------RKLEELEELNLSG-NKLTT  421 (1081)
T ss_pred             cc-hhhHHHHHHHHhcCcccccc---hhhhccccceeeeeecc-cccccCCHHHH------hchHHhHHHhccc-chhhh
Confidence            11 45666777777666533322   22335667777777776 66666665443      3666677777776 56666


Q ss_pred             cccHHHHHHhhcCcEEEEcccccchhhh
Q 005744          548 LFPFSLVKNLLQLQKVKVTDCTNLKLIV  575 (679)
Q Consensus       548 l~~~~~~~~l~~L~~L~i~~c~~L~~l~  575 (679)
                      +|.  .+..++.|++|...++ .|..+|
T Consensus       422 Lp~--tva~~~~L~tL~ahsN-~l~~fP  446 (1081)
T KOG0618|consen  422 LPD--TVANLGRLHTLRAHSN-QLLSFP  446 (1081)
T ss_pred             hhH--HHHhhhhhHHHhhcCC-ceeech
Confidence            642  2345555555554433 344444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=3.1e-19  Score=152.37  Aligned_cols=167  Identities=24%  Similarity=0.381  Sum_probs=143.7

Q ss_pred             cccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccC
Q 005744          222 IYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGD  300 (679)
Q Consensus       222 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~  300 (679)
                      +.+++..+.+++++.|.++.|.++ .+|+.+ ..+++|++|++++|+++++|.+++.++.||.|++.-|.+.. |..||.
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs  100 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS  100 (264)
T ss_pred             HhhcccccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence            355666677888888888888876 667776 78999999999999999999999999999999999998888 999999


Q ss_pred             CCCCcEEEecCCCCC--ccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhh
Q 005744          301 LKKLEILSLKHSSIE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELK  378 (679)
Q Consensus       301 L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  378 (679)
                      ++-|++||+.+|++.  .+|..|..++.|+-|++++ +.+.-+|++ ++++++||.|.+..|.+.        ..+.+++
T Consensus       101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll--------~lpkeig  170 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLL--------SLPKEIG  170 (264)
T ss_pred             CchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchh--------hCcHHHH
Confidence            999999999999777  7898888899999999998 677888888 899999999999888664        4567888


Q ss_pred             cCCCCceEEeecCCCccCCccc
Q 005744          379 QLSRLTTLEVHIPDAQVMPQDL  400 (679)
Q Consensus       379 ~l~~L~~L~l~~~~~~~~~~~~  400 (679)
                      .+++|+.|++.+|.+..+|..+
T Consensus       171 ~lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  171 DLTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             HHHHHHHHhcccceeeecChhh
Confidence            8999999999999988888764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.65  E-value=1.9e-15  Score=165.91  Aligned_cols=244  Identities=18%  Similarity=0.095  Sum_probs=156.5

Q ss_pred             chhhhhhhhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCC
Q 005744          200 DLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL  279 (679)
Q Consensus       200 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l  279 (679)
                      .++.+|.....+++.|++.+|.+..+|.  ..++|++|++++|.+. .+|.    ..++|+.|++++|.++.+|..+   
T Consensus       212 ~LtsLP~~l~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~Lp~lp---  281 (788)
T PRK15387        212 GLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPALP---  281 (788)
T ss_pred             CCCcCCcchhcCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccC-cccC----cccccceeeccCCchhhhhhch---
Confidence            4555666555677888888888877775  3577888888877766 5553    2457778888888777776533   


Q ss_pred             cCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEcc
Q 005744          280 INLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG  358 (679)
Q Consensus       280 ~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~  358 (679)
                      .+|+.|++++|.+.. |..   +++|++|++++|+++.+|...   .+|+.|++++ +.++.+|.  +  ..+|+.|+++
T Consensus       282 ~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~-N~L~~LP~--l--p~~Lq~LdLS  350 (788)
T PRK15387        282 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYN-NQLTSLPT--L--PSGLQELSVS  350 (788)
T ss_pred             hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCc---cccccccccc-Cccccccc--c--ccccceEecC
Confidence            467777888887776 432   356788888888777776532   3566677776 56666664  1  1467788888


Q ss_pred             CCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCccee
Q 005744          359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYL  438 (679)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~  438 (679)
                      +|.+....         .+  ..+|+.|+++.|.+..+|..  ..+|+.|++..+.+.......+.++.|+++++....+
T Consensus       351 ~N~Ls~LP---------~l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssI  417 (788)
T PRK15387        351 DNQLASLP---------TL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSL  417 (788)
T ss_pred             CCccCCCC---------CC--CcccceehhhccccccCccc--ccccceEEecCCcccCCCCcccCCCEEEccCCcCCCC
Confidence            77664211         11  23566677777777766653  2467777776555433223345677777777666655


Q ss_pred             chhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCC
Q 005744          439 GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP  485 (679)
Q Consensus       439 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  485 (679)
                      |..    +.+|+.|++++|. ++.+|..+   ..+++|+.|+|++|+
T Consensus       418 P~l----~~~L~~L~Ls~Nq-Lt~LP~sl---~~L~~L~~LdLs~N~  456 (788)
T PRK15387        418 PML----PSGLLSLSVYRNQ-LTRLPESL---IHLSSETTVNLEGNP  456 (788)
T ss_pred             Ccc----hhhhhhhhhccCc-ccccChHH---hhccCCCeEECCCCC
Confidence            532    3456677777655 34566665   567777777777775

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=5.3e-18  Score=144.85  Aligned_cols=153  Identities=22%  Similarity=0.366  Sum_probs=127.0

Q ss_pred             hhcCCCeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEE
Q 005744          207 KIDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTL  285 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L  285 (679)
                      .....++++.+++|++..+|+.+ .+.+|++|++++|.+. .+|.++ +.++.||.|+++-|++..+|..|+.++.|++|
T Consensus        30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levl  107 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVL  107 (264)
T ss_pred             cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhhcCccccCCCchhhhh
Confidence            34567788888888888888887 8888888888888775 777776 78888888888888888888888888888888


Q ss_pred             EcCCcccCC---cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcc
Q 005744          286 SLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT  362 (679)
Q Consensus       286 ~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~  362 (679)
                      |+..|.+.+   |..|..+..|+.|+++.|.+..+|..++++++||.|.+++ +.+-++|.+ ++.++.|++|++.+|.+
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHHhccccee
Confidence            888888766   7778888888888888888888888888888888888888 667778877 78888888888888866


Q ss_pred             c
Q 005744          363 Q  363 (679)
Q Consensus       363 ~  363 (679)
                      .
T Consensus       186 ~  186 (264)
T KOG0617|consen  186 T  186 (264)
T ss_pred             e
Confidence            4

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.60  E-value=5.1e-15  Score=163.73  Aligned_cols=245  Identities=16%  Similarity=0.208  Sum_probs=131.2

Q ss_pred             CCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCc
Q 005744          211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC  290 (679)
Q Consensus       211 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~  290 (679)
                      +...++++++.+..+|..+ .++++.|++++|.+. .+|..++   .+|++|++++|.++.+|..+.  .+|+.|++++|
T Consensus       179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N  251 (754)
T PRK15370        179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN  251 (754)
T ss_pred             CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence            3455555555555555433 234556666555554 4554432   355666666666555555443  35566666666


Q ss_pred             ccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccC
Q 005744          291 LVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ  369 (679)
Q Consensus       291 ~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~  369 (679)
                      .+.. |..+.  .+|++|++++|+++.+|..+.  .+|++|++++ +.++.+|.. +.  ++|+.|++++|.+....   
T Consensus       252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~LP---  320 (754)
T PRK15370        252 RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD-NSIRTLPAH-LP--SGITHLNVQSNSLTALP---  320 (754)
T ss_pred             ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC-CccccCccc-ch--hhHHHHHhcCCccccCC---
Confidence            5555 44433  355666666665555555443  3566666655 345555543 21  34555555555443110   


Q ss_pred             CcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCC-CCCCCcceEEecCCCcceechhHHHHhhc
Q 005744          370 SNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWS-DGYETSKTLKLQLNNSTYLGYGMKMLLKR  448 (679)
Q Consensus       370 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~L~L~~~~~~~~~~~~~~~l~~  448 (679)
                           ..+  .++|+.|++++|.+..+|..+. ++|+.|++..+.+.... ...+.|+.|+|++|....+|..+.   ..
T Consensus       321 -----~~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l~---~s  389 (754)
T PRK15370        321 -----ETL--PPGLKTLEAGENALTSLPASLP-PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENLP---AA  389 (754)
T ss_pred             -----ccc--cccceeccccCCccccCChhhc-CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCHhHH---HH
Confidence                 001  1345555565555555554432 45555555444322110 112467778888777777776654   46


Q ss_pred             ccccccccccCcccccccccc-hhhccccceEeeecCC
Q 005744          449 TEDLHLDELAGFKNVVHELDD-EEGFARLRHLHVHNGP  485 (679)
Q Consensus       449 L~~L~l~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~  485 (679)
                      |+.|++++|.. ..+|..+.. ...++++..|.+.+|+
T Consensus       390 L~~LdLs~N~L-~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        390 LQIMQASRNNL-VRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             HHHHhhccCCc-ccCchhHHHHhhcCCCccEEEeeCCC
Confidence            88888888764 455554421 1335778888888886

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.60  E-value=7.8e-15  Score=161.20  Aligned_cols=259  Identities=20%  Similarity=0.162  Sum_probs=181.1

Q ss_pred             CCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCC
Q 005744          210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN  289 (679)
Q Consensus       210 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~  289 (679)
                      ..-..|+++.+.+..+|..+. ++|+.|.+..|++. .+|.    ..++|++|++++|.++.+|..   .++|+.|++++
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS  271 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence            456788999999999998663 48999999998877 5774    368999999999999999864   46889999999


Q ss_pred             cccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceecc
Q 005744          290 CLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG  368 (679)
Q Consensus       290 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~  368 (679)
                      |.+.. |..   ..+|+.|++++|+++.+|..   +++|++|++++ +.++.+|.. .   .+|+.|++++|.+...   
T Consensus       272 N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~l-p---~~L~~L~Ls~N~L~~L---  337 (788)
T PRK15387        272 NPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPAL-P---SELCKLWAYNNQLTSL---  337 (788)
T ss_pred             Cchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCC-CccccCCCC-c---ccccccccccCccccc---
Confidence            99887 543   35788999999999999863   47899999998 578888752 2   4677888888876421   


Q ss_pred             CCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhc
Q 005744          369 QSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKR  448 (679)
Q Consensus       369 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~  448 (679)
                            ..+  ..+|+.|++++|.+..+|..  ..+|+.|++                    +.+....+|..    ..+
T Consensus       338 ------P~l--p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~L--------------------s~N~L~~LP~l----~~~  383 (788)
T PRK15387        338 ------PTL--PSGLQELSVSDNQLASLPTL--PSELYKLWA--------------------YNNRLTSLPAL----PSG  383 (788)
T ss_pred             ------ccc--ccccceEecCCCccCCCCCC--Ccccceehh--------------------hccccccCccc----ccc
Confidence                  111  14788999999988877653  234444444                    33333333321    346


Q ss_pred             ccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCc
Q 005744          449 TEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDD  528 (679)
Q Consensus       449 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~  528 (679)
                      |+.|++++|.. ..+|..      .++|+.|++++|. +..++.      .+.+|+.|++++ ++++.+|..       .
T Consensus       384 L~~LdLs~N~L-t~LP~l------~s~L~~LdLS~N~-LssIP~------l~~~L~~L~Ls~-NqLt~LP~s-------l  441 (788)
T PRK15387        384 LKELIVSGNRL-TSLPVL------PSELKELMVSGNR-LTSLPM------LPSGLLSLSVYR-NQLTRLPES-------L  441 (788)
T ss_pred             cceEEecCCcc-cCCCCc------ccCCCEEEccCCc-CCCCCc------chhhhhhhhhcc-CcccccChH-------H
Confidence            77788877653 344432      3568888888875 433331      234677888887 677766543       4


Q ss_pred             cccCCccEEEEecCCCcccc
Q 005744          529 KSFSNLRIIKVEGCHRVKHL  548 (679)
Q Consensus       529 ~~l~~L~~L~l~~c~~L~~l  548 (679)
                      ..+++|+.|+++++ .+...
T Consensus       442 ~~L~~L~~LdLs~N-~Ls~~  460 (788)
T PRK15387        442 IHLSSETTVNLEGN-PLSER  460 (788)
T ss_pred             hhccCCCeEECCCC-CCCch
Confidence            46788888888874 45543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.57  E-value=1e-14  Score=163.89  Aligned_cols=279  Identities=23%  Similarity=0.346  Sum_probs=180.5

Q ss_pred             CcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCc--CCcCCcc-ccCCcCCCEEEcCCccc-CC-c
Q 005744          221 GIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR--FHSLPSS-LGCLINLRTLSLENCLV-VD-V  295 (679)
Q Consensus       221 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--l~~lp~~-i~~l~~L~~L~L~~~~~-~~-~  295 (679)
                      .....|........|...+.+|.+. .++..  ...+.|++|-+.+|.  +..++.. |..+++|++|||++|.- .. |
T Consensus       512 ~~~~~~~~~~~~~~rr~s~~~~~~~-~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP  588 (889)
T KOG4658|consen  512 GLSEIPQVKSWNSVRRMSLMNNKIE-HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP  588 (889)
T ss_pred             CccccccccchhheeEEEEeccchh-hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence            3344666566778888888887764 34443  345579999999886  6666554 67799999999998754 44 9


Q ss_pred             ccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChh
Q 005744          296 AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLG  375 (679)
Q Consensus       296 ~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  375 (679)
                      ++|++|.+||+|+++++.++.+|.++++|.+|.+|++..+..+..+ ++++..|++|++|.+......     .....+.
T Consensus       589 ~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~-----~~~~~l~  662 (889)
T KOG4658|consen  589 SSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALS-----NDKLLLK  662 (889)
T ss_pred             hHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccc-----cchhhHH
Confidence            9999999999999999999999999999999999999986666666 444666999999988765421     1224455


Q ss_pred             hhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccc
Q 005744          376 ELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLD  455 (679)
Q Consensus       376 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~  455 (679)
                      ++.++.+|+.+.+..... .+...+                                       ..+.......+.+.+.
T Consensus       663 el~~Le~L~~ls~~~~s~-~~~e~l---------------------------------------~~~~~L~~~~~~l~~~  702 (889)
T KOG4658|consen  663 ELENLEHLENLSITISSV-LLLEDL---------------------------------------LGMTRLRSLLQSLSIE  702 (889)
T ss_pred             hhhcccchhhheeecchh-HhHhhh---------------------------------------hhhHHHHHHhHhhhhc
Confidence            666666666655532221 000000                                       0011112223333333


Q ss_pred             cccCcccccccccchhhccccceEeeecCCCeeEEEeCCC--cccc-ccccceeeccccccccccccCcccCCCCccccC
Q 005744          456 ELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDG--RVGT-FPLLESLFLHNLINLEKVCDGKVRLNEDDKSFS  532 (679)
Q Consensus       456 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~~-~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~  532 (679)
                      ++. ....+..+   ..+.+|+.|.+.+|...+.......  .... ||++..+.+.+|..++......+        .|
T Consensus       703 ~~~-~~~~~~~~---~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f--------~~  770 (889)
T KOG4658|consen  703 GCS-KRTLISSL---GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF--------AP  770 (889)
T ss_pred             ccc-cceeeccc---ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhc--------cC
Confidence            322 22233333   6788888888888876543221111  1122 77888888888887777544333        38


Q ss_pred             CccEEEEecCCCccccccHHHHHHhhcCcE
Q 005744          533 NLRIIKVEGCHRVKHLFPFSLVKNLLQLQK  562 (679)
Q Consensus       533 ~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~  562 (679)
                      +|+.|.+..|+.+.++.+.  ...+..+++
T Consensus       771 ~L~~l~l~~~~~~e~~i~~--~k~~~~l~~  798 (889)
T KOG4658|consen  771 HLTSLSLVSCRLLEDIIPK--LKALLELKE  798 (889)
T ss_pred             cccEEEEecccccccCCCH--HHHhhhccc
Confidence            8999999888888876443  344444544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.56  E-value=7.4e-15  Score=162.47  Aligned_cols=235  Identities=18%  Similarity=0.211  Sum_probs=180.1

Q ss_pred             cchhhhhhhhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccC
Q 005744          199 ADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGC  278 (679)
Q Consensus       199 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~  278 (679)
                      ..+..+|...++.++.|++++|.+..+|..+. ++|++|++++|.+. .+|..+   ..+|+.|++++|.++.+|..+. 
T Consensus       188 ~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~Ls~N~L~~LP~~l~-  261 (754)
T PRK15370        188 LGLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLT-SIPATL---PDTIQEMELSINRITELPERLP-  261 (754)
T ss_pred             CCcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccc-cCChhh---hccccEEECcCCccCcCChhHh-
Confidence            34555666567789999999999999987653 68999999999876 678755   3479999999999999998775 


Q ss_pred             CcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEc
Q 005744          279 LINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM  357 (679)
Q Consensus       279 l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l  357 (679)
                       .+|++|++++|.+.. |..+.  .+|++|++++|+++.+|..+.  .+|++|++++ +.+..+|.. +  .++|+.|++
T Consensus       262 -s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~-l--~~sL~~L~L  332 (754)
T PRK15370        262 -SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPET-L--PPGLKTLEA  332 (754)
T ss_pred             -CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCcc-c--cccceeccc
Confidence             589999999999888 76664  589999999999999987654  4789999998 677788764 3  268999999


Q ss_pred             cCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCC-CCCcceEEecCCCcc
Q 005744          358 GNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDG-YETSKTLKLQLNNST  436 (679)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~L~~~~~~  436 (679)
                      ++|.+...        +..+  .++|+.|++++|.+..+|..+ .++|+.|++..+........ ...|+.|+++++...
T Consensus       333 s~N~Lt~L--------P~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~  401 (754)
T PRK15370        333 GENALTSL--------PASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVSRNALTNLPENLPAALQIMQASRNNLV  401 (754)
T ss_pred             cCCccccC--------Chhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCCCCCHhHHHHHHHHhhccCCcc
Confidence            99876521        1122  258999999999988887765 36899999887764432211 236888889988888


Q ss_pred             eechhHHHH---hhcccccccccccC
Q 005744          437 YLGYGMKML---LKRTEDLHLDELAG  459 (679)
Q Consensus       437 ~~~~~~~~~---l~~L~~L~l~~~~~  459 (679)
                      .+|..+...   ++.+..|.+.+|..
T Consensus       402 ~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        402 RLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             cCchhHHHHhhcCCCccEEEeeCCCc
Confidence            888776553   35678888888764

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.55  E-value=3.2e-16  Score=151.38  Aligned_cols=143  Identities=23%  Similarity=0.309  Sum_probs=96.8

Q ss_pred             EecccchhhhhhhhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-C
Q 005744          195 IQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-P  273 (679)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p  273 (679)
                      -+.+..++++|...+.....|.|..|.|+                       .+|+..|+.+++||.||||+|.|+.+ |
T Consensus        52 dCr~~GL~eVP~~LP~~tveirLdqN~I~-----------------------~iP~~aF~~l~~LRrLdLS~N~Is~I~p  108 (498)
T KOG4237|consen   52 DCRGKGLTEVPANLPPETVEIRLDQNQIS-----------------------SIPPGAFKTLHRLRRLDLSKNNISFIAP  108 (498)
T ss_pred             EccCCCcccCcccCCCcceEEEeccCCcc-----------------------cCChhhccchhhhceecccccchhhcCh
Confidence            34455666666666666666666665554                       45555667777777777777777766 6


Q ss_pred             ccccCCcCCCEEEcCC-cccCC-c-ccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCC
Q 005744          274 SSLGCLINLRTLSLEN-CLVVD-V-AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNL  349 (679)
Q Consensus       274 ~~i~~l~~L~~L~L~~-~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l  349 (679)
                      +.|..+..|-.|.+.+ |+|.+ | ..|++|..|+.|.+.-|++..++. .+..|++|..|.+.+ +.+..++.+.+..+
T Consensus       109 ~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l  187 (498)
T KOG4237|consen  109 DAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGL  187 (498)
T ss_pred             HhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccch
Confidence            7777777777666665 66666 3 557777777777777777775544 467777777777777 66677776667777


Q ss_pred             CCCcEEEccCCc
Q 005744          350 TRLEELYMGNSF  361 (679)
Q Consensus       350 ~~L~~L~l~~~~  361 (679)
                      ..++++.+..|.
T Consensus       188 ~~i~tlhlA~np  199 (498)
T KOG4237|consen  188 AAIKTLHLAQNP  199 (498)
T ss_pred             hccchHhhhcCc
Confidence            777777766553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.51  E-value=6.8e-16  Score=149.16  Aligned_cols=258  Identities=17%  Similarity=0.207  Sum_probs=162.7

Q ss_pred             ccchhhhhh---hhcCCCeEEEccCCCcccCCccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC
Q 005744          198 VADLKEELD---KIDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL  272 (679)
Q Consensus       198 ~~~~~~~~~---~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l  272 (679)
                      .+.++.+|.   ...+++|+|+|++|.|+.|.+..  +++.+.+|.+.+++....+|.+.|+++..|+.|.+.-|.+..+
T Consensus        76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci  155 (498)
T KOG4237|consen   76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI  155 (498)
T ss_pred             cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence            345666666   66788999999999998876543  8899988888885545589999999999999999999988866


Q ss_pred             -CccccCCcCCCEEEcCCcccCC-c-ccccCCCCCcEEEecCCCCC---cc----------chhhhcCCCCCEEcccCCc
Q 005744          273 -PSSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIE---QL----------PREIGQLTCLKLLDLSNCS  336 (679)
Q Consensus       273 -p~~i~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~---~l----------p~~i~~L~~L~~L~l~~~~  336 (679)
                       .+.+..+++|+.|.+..|.+.. + ..+..+..++++.+..|.+-   .+          |..++.....+-..+.+ .
T Consensus       156 r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~-~  234 (498)
T KOG4237|consen  156 RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYY-K  234 (498)
T ss_pred             hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHH-H
Confidence             4668889999999999998877 4 47888888888887776421   11          22223333332223332 3


Q ss_pred             cccccCcccccCCCCCcEE---EccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeC
Q 005744          337 KLKEIRPNVISNLTRLEEL---YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIG  413 (679)
Q Consensus       337 ~l~~lp~~~l~~l~~L~~L---~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  413 (679)
                      ++..+++..+.  .+++.+   ..+.+....      .....-++.+++|++|++++|.++.+.+.              
T Consensus       235 Ri~q~~a~kf~--c~~esl~s~~~~~d~~d~------~cP~~cf~~L~~L~~lnlsnN~i~~i~~~--------------  292 (498)
T KOG4237|consen  235 RINQEDARKFL--CSLESLPSRLSSEDFPDS------ICPAKCFKKLPNLRKLNLSNNKITRIEDG--------------  292 (498)
T ss_pred             Hhcccchhhhh--hhHHhHHHhhccccCcCC------cChHHHHhhcccceEeccCCCccchhhhh--------------
Confidence            33333332111  112222   111111110      01123467788888888888877665443              


Q ss_pred             CcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCC
Q 005744          414 DVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP  485 (679)
Q Consensus       414 ~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  485 (679)
                          ++.....++.|.|..|....+...++..+..|+.|++.+|......|..|   +.+.+|..|.+-.|+
T Consensus       293 ----aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF---~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  293 ----AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF---QTLFSLSTLNLLSNP  357 (498)
T ss_pred             ----hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc---cccceeeeeehccCc
Confidence                33444555555555555555556666666677777777766555555555   556666677666655

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.30  E-value=1.3e-13  Score=139.52  Aligned_cols=189  Identities=23%  Similarity=0.331  Sum_probs=164.8

Q ss_pred             ccchhhhhh----hhcCCCeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC
Q 005744          198 VADLKEELD----KIDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL  272 (679)
Q Consensus       198 ~~~~~~~~~----~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l  272 (679)
                      +.+++++|.    .........+++.|++.++|... .+..|..+.++.|.+. .+|..+ .++..|.+||++.|++..+
T Consensus        59 ~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS~l  136 (722)
T KOG0532|consen   59 GRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLSHL  136 (722)
T ss_pred             cchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhh-hhhhHHHHhhhccchhhcC
Confidence            344445554    23445677899999999999887 7889999999999876 677776 8999999999999999999


Q ss_pred             CccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCC
Q 005744          273 PSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR  351 (679)
Q Consensus       273 p~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~  351 (679)
                      |..++.|+ |+.|.+++|++.. |+.++.+..|..||.+.|.+..+|..++.+.+|+.|.++. +++..+|++ +..| .
T Consensus       137 p~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~L-p  212 (722)
T KOG0532|consen  137 PDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCSL-P  212 (722)
T ss_pred             ChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhCC-c
Confidence            99998886 9999999999999 9999999999999999999999999999999999999999 788999988 6766 5


Q ss_pred             CcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc
Q 005744          352 LEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL  400 (679)
Q Consensus       352 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  400 (679)
                      |..|+++.|.+.        ..+-.+.+|++|++|.+.+|-+..-|..+
T Consensus       213 Li~lDfScNkis--------~iPv~fr~m~~Lq~l~LenNPLqSPPAqI  253 (722)
T KOG0532|consen  213 LIRLDFSCNKIS--------YLPVDFRKMRHLQVLQLENNPLQSPPAQI  253 (722)
T ss_pred             eeeeecccCcee--------ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence            999999999875        45568899999999999999999888777

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.20  E-value=5.3e-12  Score=129.75  Aligned_cols=123  Identities=23%  Similarity=0.187  Sum_probs=54.9

Q ss_pred             CCeEEEccCCCcc-----cCCccc-CCcceeeeeeccCCccc------CCCchhhcCCCCccEEEeCCCcCC-cCCcccc
Q 005744          211 APTAISIPFRGIY-----ELPERL-GFLKLKLFLFFTENLSL------QIPDPFFEGMTELRVLDLTGFRFH-SLPSSLG  277 (679)
Q Consensus       211 ~l~~l~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~------~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~i~  277 (679)
                      .++.++++++.+.     .++..+ ..+.++.++++++.+.+      .++ ..+..+++|+.|++++|.+. ..+..+.
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL-QGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH-HHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            3555666555541     122222 34445555555544331      011 12344555555555555544 2222333


Q ss_pred             CCcC---CCEEEcCCcccCC------cccccCC-CCCcEEEecCCCCC-----ccchhhhcCCCCCEEcccC
Q 005744          278 CLIN---LRTLSLENCLVVD------VAIIGDL-KKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSN  334 (679)
Q Consensus       278 ~l~~---L~~L~L~~~~~~~------~~~i~~L-~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~  334 (679)
                      .+.+   |++|++++|.+..      ...+..+ ++|+.|++++|.++     .++..+..+++|++|++++
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~  174 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN  174 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence            3332   5555555555442      1233344 55555555555544     2233344444555555555

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.20  E-value=6.6e-12  Score=129.01  Aligned_cols=158  Identities=19%  Similarity=0.187  Sum_probs=77.0

Q ss_pred             CCcceeeeeeccCCcccC----CCchhhcCCCCccEEEeCCCcCCc-------CCccccCCcCCCEEEcCCcccCC--cc
Q 005744          230 GFLKLKLFLFFTENLSLQ----IPDPFFEGMTELRVLDLTGFRFHS-------LPSSLGCLINLRTLSLENCLVVD--VA  296 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~l~~-------lp~~i~~l~~L~~L~L~~~~~~~--~~  296 (679)
                      .+++|+.|++.++.+...    ++. .+...+.|+.|+++++.+..       ++..+..+++|++|++++|.+..  +.
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   99 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG   99 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence            445566666666655321    222 22455556666666655442       23344556666666666666543  33


Q ss_pred             cccCCCC---CcEEEecCCCCC-----ccchhhhcC-CCCCEEcccCCcccc-----ccCcccccCCCCCcEEEccCCcc
Q 005744          297 IIGDLKK---LEILSLKHSSIE-----QLPREIGQL-TCLKLLDLSNCSKLK-----EIRPNVISNLTRLEELYMGNSFT  362 (679)
Q Consensus       297 ~i~~L~~---L~~L~l~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~~l~-----~lp~~~l~~l~~L~~L~l~~~~~  362 (679)
                      .+..+.+   |++|++++|.+.     .+...+..+ ++|++|++++|. ++     .++. .+..+++|++|++++|.+
T Consensus       100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l  177 (319)
T cd00116         100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAK-ALRANRDLKELNLANNGI  177 (319)
T ss_pred             HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHH-HHHhCCCcCEEECcCCCC
Confidence            3333333   666666666554     222334445 566666666643 22     1111 134445566666666544


Q ss_pred             cceeccCCcCChhhhhcCCCCceEEeecCCC
Q 005744          363 QWKVEGQSNASLGELKQLSRLTTLEVHIPDA  393 (679)
Q Consensus       363 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  393 (679)
                      ...   ........+...++|+.|++++|.+
T Consensus       178 ~~~---~~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         178 GDA---GIRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             chH---HHHHHHHHHHhCCCCCEEeccCCcc
Confidence            320   0001122334445566666655543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=8.8e-11  Score=106.02  Aligned_cols=120  Identities=25%  Similarity=0.331  Sum_probs=34.1

Q ss_pred             CCCeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccc-cCCcCCCEEEc
Q 005744          210 EAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSL  287 (679)
Q Consensus       210 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~L  287 (679)
                      .+.+.|++++|.+..+.... .+.+|++|++++|.+. .++.  +..+++|++|++++|.++.+++.+ ..+++|++|++
T Consensus        19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             cccccccccccccccccchhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            34566666666665554333 3556666666666554 3332  345566666666666666554433 24556666666


Q ss_pred             CCcccCC---cccccCCCCCcEEEecCCCCCccch----hhhcCCCCCEEcc
Q 005744          288 ENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPR----EIGQLTCLKLLDL  332 (679)
Q Consensus       288 ~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~l  332 (679)
                      ++|.+.+   ...+..+++|++|++.+|.++.-+.    .+..+++|+.||-
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            6665544   3444555556666666655543322    2444555555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.10  E-value=3.8e-12  Score=129.14  Aligned_cols=189  Identities=21%  Similarity=0.296  Sum_probs=161.2

Q ss_pred             eEEEccCCCcccCCccc---CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCC
Q 005744          213 TAISIPFRGIYELPERL---GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN  289 (679)
Q Consensus       213 ~~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~  289 (679)
                      -++.|++.++..+|..-   .+.--...+++.|.+. .+|..+ ..+-.|..+.+..|.+..+|..++++..|.+|+|+.
T Consensus        53 g~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~  130 (722)
T KOG0532|consen   53 GRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS  130 (722)
T ss_pred             cccccccchhhcCCCccccccccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc
Confidence            34667777776666432   5666777888998877 788876 778899999999999999999999999999999999


Q ss_pred             cccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceecc
Q 005744          290 CLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG  368 (679)
Q Consensus       290 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~  368 (679)
                      |++.. |..++.|+ |+.|-+++|+++.+|..|+.+..|.+|+.+. +.+..+|+. ++.+.+|+.|++..|.+.     
T Consensus       131 NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsq-l~~l~slr~l~vrRn~l~-----  202 (722)
T KOG0532|consen  131 NQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQ-LGYLTSLRDLNVRRNHLE-----  202 (722)
T ss_pred             chhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHH-hhhHHHHHHHHHhhhhhh-----
Confidence            99999 88888875 9999999999999999999999999999998 678889887 899999999999988765     


Q ss_pred             CCcCChhhhhcCCCCceEEeecCCCccCCccc-cccccceeEEEeCCc
Q 005744          369 QSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDV  415 (679)
Q Consensus       369 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~  415 (679)
                         ..++++..| .|..|++++|++..+|..+ .+..|+.|.+.++..
T Consensus       203 ---~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  203 ---DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             ---hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence               556778855 5899999999999999887 788888887766553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.07  E-value=1.4e-10  Score=104.76  Aligned_cols=128  Identities=27%  Similarity=0.362  Sum_probs=38.2

Q ss_pred             CCCCccEEEeCCCcCCcCCcccc-CCcCCCEEEcCCcccCCcccccCCCCCcEEEecCCCCCccchhhh-cCCCCCEEcc
Q 005744          255 GMTELRVLDLTGFRFHSLPSSLG-CLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIG-QLTCLKLLDL  332 (679)
Q Consensus       255 ~l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~-~L~~L~~L~l  332 (679)
                      +...+|.|+|++|.|+.+. .++ .+.+|+.|++++|.+...+.+..+++|++|++++|.|++++..+. .+++|++|++
T Consensus        17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            4445666666666666553 243 456666666666666665566666666666666666666655443 4666777766


Q ss_pred             cCCccccccCc-ccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEe
Q 005744          333 SNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV  388 (679)
Q Consensus       333 ~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  388 (679)
                      ++ +.+.++.. ..++.+++|+.|++.+|.+...    ......-+..+++|+.|+-
T Consensus        96 ~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~----~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   96 SN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEK----KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGS----TTHHHHHHHH-TT-SEETT
T ss_pred             cC-CcCCChHHhHHHHcCCCcceeeccCCcccch----hhHHHHHHHHcChhheeCC
Confidence            66 44444322 2255566677777666655311    1112223445556665554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.96  E-value=9.6e-11  Score=109.78  Aligned_cols=184  Identities=16%  Similarity=0.151  Sum_probs=132.1

Q ss_pred             hhcCCCeEEEccCCCcccCCccc-CCcceeeeeeccCCccc---CCCchh-------------------hcCCCCccEEE
Q 005744          207 KIDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSL---QIPDPF-------------------FEGMTELRVLD  263 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~---~~~~~~-------------------~~~l~~L~~L~  263 (679)
                      ...+++..+-++.+.-+.+.... .-|.|.++.+....+..   -+|...                   ....+.|..+|
T Consensus       211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD  290 (490)
T KOG1259|consen  211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELD  290 (490)
T ss_pred             HHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcc
Confidence            34556666666666554444332 34556666654433211   011100                   13356788999


Q ss_pred             eCCCcCCcCCccccCCcCCCEEEcCCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCc
Q 005744          264 LTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP  343 (679)
Q Consensus       264 l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~  343 (679)
                      ||+|.|+.+.+++.-++.+|.|+++.|.+.....+..|.+|+.||+++|.++++-.+-.+|-|.++|.+.+ +.+.++..
T Consensus       291 LS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LSG  369 (490)
T KOG1259|consen  291 LSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-NKIETLSG  369 (490)
T ss_pred             ccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-hhHhhhhh
Confidence            99999999888888899999999999999887778999999999999998888876667888999999998 67777643


Q ss_pred             ccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCcc
Q 005744          344 NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQD  399 (679)
Q Consensus       344 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  399 (679)
                        +++|-+|..|++.+|.+..-      .....+++++.|+.+.+.+|.+..+++.
T Consensus       370 --L~KLYSLvnLDl~~N~Ie~l------deV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  370 --LRKLYSLVNLDLSSNQIEEL------DEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             --hHhhhhheeccccccchhhH------HHhcccccccHHHHHhhcCCCccccchH
Confidence              78888999999998876421      2345677888888888888877655543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.95  E-value=8.7e-11  Score=110.06  Aligned_cols=128  Identities=27%  Similarity=0.334  Sum_probs=66.9

Q ss_pred             CcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEe
Q 005744          231 FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSL  309 (679)
Q Consensus       231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l  309 (679)
                      ...|+++++++|.+. .+.+++ .-.+.+|+|++|.|++..+-. +..|++|+.|||++|.+.. ...-.+|-|.++|.+
T Consensus       283 Wq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            344555555555544 343333 445555555555555554433 5555555555655555555 333344555555555


Q ss_pred             cCCCCCccchhhhcCCCCCEEcccCCccccccCc-ccccCCCCCcEEEccCCccc
Q 005744          310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQ  363 (679)
Q Consensus       310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~  363 (679)
                      ++|.|..+. ++++|.+|.+||+++ +++..+.. ..||+|+.|+++.+.+|.+.
T Consensus       360 a~N~iE~LS-GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  360 AQNKIETLS-GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhhHhhhh-hhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            555555542 455555566666555 34433321 12566666666666665543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.91  E-value=1.1e-09  Score=115.84  Aligned_cols=168  Identities=29%  Similarity=0.381  Sum_probs=73.8

Q ss_pred             CcceeeeeeccCCcccCCCchhhcCCC-CccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEE
Q 005744          231 FLKLKLFLFFTENLSLQIPDPFFEGMT-ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILS  308 (679)
Q Consensus       231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~  308 (679)
                      .+.++.|.+.++.+. .++... ..++ +|+.|++++|.+..+|..++.+++|+.|++++|.+.+ +...+.+.+|+.|+
T Consensus       115 ~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~  192 (394)
T COG4886         115 LTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD  192 (394)
T ss_pred             ccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence            344444444444443 333322 2232 4555555555555554444555555555555555544 33333445555555


Q ss_pred             ecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEe
Q 005744          309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV  388 (679)
Q Consensus       309 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  388 (679)
                      +++|+++.+|..+..+..|++|.++++. ....+.. +.++.++..+.+.++.+.        ..+..++.+++++.|++
T Consensus       193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~--------~~~~~~~~l~~l~~L~~  262 (394)
T COG4886         193 LSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE--------DLPESIGNLSNLETLDL  262 (394)
T ss_pred             ccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee--------eccchhccccccceecc
Confidence            5555555555444444445555554421 2222222 344444444444443321        01223344444555555


Q ss_pred             ecCCCccCCccccccccceeEE
Q 005744          389 HIPDAQVMPQDLVFVELERFRI  410 (679)
Q Consensus       389 ~~~~~~~~~~~~~~~~L~~L~l  410 (679)
                      +.|.+..++....+.+++.|++
T Consensus       263 s~n~i~~i~~~~~~~~l~~L~~  284 (394)
T COG4886         263 SNNQISSISSLGSLTNLRELDL  284 (394)
T ss_pred             ccccccccccccccCccCEEec
Confidence            5554444444224444444444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.88  E-value=2e-09  Score=113.91  Aligned_cols=170  Identities=27%  Similarity=0.409  Sum_probs=81.6

Q ss_pred             CCCCccEEEeCCCcCCcCCccccCCc-CCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcc
Q 005744          255 GMTELRVLDLTGFRFHSLPSSLGCLI-NLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDL  332 (679)
Q Consensus       255 ~l~~L~~L~l~~~~l~~lp~~i~~l~-~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l  332 (679)
                      .++.+..|++.++.++.+|.....+. +|+.|++++|.+.. +..++.+++|+.|++++|++..+|...+.+++|+.|++
T Consensus       114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence            33455555555555555555554443 55555555555555 34555555555555555555555554445555555555


Q ss_pred             cCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc-cccccceeEEE
Q 005744          333 SNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRIC  411 (679)
Q Consensus       333 ~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~  411 (679)
                      ++ +.+..+|.. ++.+..|++|.+++|...        ..+..+.++.++..+.+..+.+..++..+ .+.+++.|++.
T Consensus       194 s~-N~i~~l~~~-~~~~~~L~~l~~~~N~~~--------~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s  263 (394)
T COG4886         194 SG-NKISDLPPE-IELLSALEELDLSNNSII--------ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS  263 (394)
T ss_pred             cC-CccccCchh-hhhhhhhhhhhhcCCcce--------ecchhhhhcccccccccCCceeeeccchhccccccceeccc
Confidence            55 445555543 233444555555554211        22233444444444444444444433333 33445555544


Q ss_pred             eCCccc--CCCCCCCcceEEecCCC
Q 005744          412 IGDVWS--WSDGYETSKTLKLQLNN  434 (679)
Q Consensus       412 ~~~~~~--~~~~~~~l~~L~L~~~~  434 (679)
                      .+.+..  .+....+++.+.++++.
T Consensus       264 ~n~i~~i~~~~~~~~l~~L~~s~n~  288 (394)
T COG4886         264 NNQISSISSLGSLTNLRELDLSGNS  288 (394)
T ss_pred             cccccccccccccCccCEEeccCcc
Confidence            433222  13444455555555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.79  E-value=1.6e-10  Score=113.54  Aligned_cols=83  Identities=28%  Similarity=0.331  Sum_probs=45.5

Q ss_pred             CccEEEeCCCcCC---cCCccccCCcCCCEEEcCCcccCC---c-ccccCCCCCcEEEecCC-CCCcc--chhhhcCCCC
Q 005744          258 ELRVLDLTGFRFH---SLPSSLGCLINLRTLSLENCLVVD---V-AIIGDLKKLEILSLKHS-SIEQL--PREIGQLTCL  327 (679)
Q Consensus       258 ~L~~L~l~~~~l~---~lp~~i~~l~~L~~L~L~~~~~~~---~-~~i~~L~~L~~L~l~~~-~l~~l--p~~i~~L~~L  327 (679)
                      .|+.|.+.|+.-.   .+-..-.++++++.|.+.+|...+   . ..-...++|++|++..| .++..  -.-...+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            5677777776522   233334566777777777775333   1 22234566666666665 44421  1123456666


Q ss_pred             CEEcccCCccccc
Q 005744          328 KLLDLSNCSKLKE  340 (679)
Q Consensus       328 ~~L~l~~~~~l~~  340 (679)
                      .+|+++.|..++.
T Consensus       219 ~~lNlSwc~qi~~  231 (483)
T KOG4341|consen  219 KYLNLSWCPQISG  231 (483)
T ss_pred             HHhhhccCchhhc
Confidence            6666666655544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=1.5e-09  Score=107.40  Aligned_cols=202  Identities=19%  Similarity=0.138  Sum_probs=134.1

Q ss_pred             hhcCCCeEEEccCCCcccCCc--cc-CCcceeeeeeccCCccc-CCCchhhcCCCCccEEEeCCCcCCcCCcc--ccCCc
Q 005744          207 KIDEAPTAISIPFRGIYELPE--RL-GFLKLKLFLFFTENLSL-QIPDPFFEGMTELRVLDLTGFRFHSLPSS--LGCLI  280 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~lp~~--i~~l~  280 (679)
                      ...++++.+++.++.+...+.  .. .++++|.|+|+.|-+.. ..-..+...+++|+.|+++.|.+...-++  -..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            556789999999988876663  33 79999999998876542 11234457899999999999987643222  23678


Q ss_pred             CCCEEEcCCcccCC---cccccCCCCCcEEEecCC-CCCccchhhhcCCCCCEEcccCCccccccCc-ccccCCCCCcEE
Q 005744          281 NLRTLSLENCLVVD---VAIIGDLKKLEILSLKHS-SIEQLPREIGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEEL  355 (679)
Q Consensus       281 ~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L  355 (679)
                      +|+.|.+++|.++.   ......+++|+.|++.+| .+..-.....-+..|++|+|+++ .+-+.+. ...+.++.|+.|
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN-NLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC-cccccccccccccccchhhh
Confidence            89999999998875   344556788999999988 33322233455678889999984 4444441 126778888888


Q ss_pred             EccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc---cccccceeEE
Q 005744          356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL---VFVELERFRI  410 (679)
Q Consensus       356 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l  410 (679)
                      +++.|.+.. +.............+++|++|.+..|.+..+++--   .+++|+.|.+
T Consensus       277 nls~tgi~s-i~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  277 NLSSTGIAS-IAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             hccccCcch-hcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence            888876642 11222223334456678888888888776554331   4445555544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=5.4e-09  Score=103.49  Aligned_cols=181  Identities=19%  Similarity=0.161  Sum_probs=134.1

Q ss_pred             hhcCCCeEEEccCCCcccCCcc---c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCC--cCCccccCCc
Q 005744          207 KIDEAPTAISIPFRGIYELPER---L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH--SLPSSLGCLI  280 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~l~~~---~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~lp~~i~~l~  280 (679)
                      ..+.+++.|+++.|-+......   . .+|+|+.|+++.|.+.-...+..-..+++|+.|.+++|.++  .+-..+..++
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence            5678999999999987544332   2 79999999999998764333333356889999999999987  3444456789


Q ss_pred             CCCEEEcCCcc-cCC-cccccCCCCCcEEEecCCCCCccc--hhhhcCCCCCEEcccCCcccccc--Ccc----cccCCC
Q 005744          281 NLRTLSLENCL-VVD-VAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEI--RPN----VISNLT  350 (679)
Q Consensus       281 ~L~~L~L~~~~-~~~-~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~l--p~~----~l~~l~  350 (679)
                      +|..|+|..|. +.. -....-++.|+.|||++|++..++  ..++.++.|+.|+++. +.+.++  |+.    ....++
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~  301 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFP  301 (505)
T ss_pred             cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc-cCcchhcCCCccchhhhcccc
Confidence            99999999995 332 455666889999999999888777  4588999999999988 445443  221    124578


Q ss_pred             CCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCc
Q 005744          351 RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ  394 (679)
Q Consensus       351 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  394 (679)
                      +|++|++..|.+...      ..+..+..+.+|+.|.+.++.+.
T Consensus       302 kL~~L~i~~N~I~~w------~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  302 KLEYLNISENNIRDW------RSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cceeeecccCccccc------cccchhhccchhhhhhccccccc
Confidence            999999999977321      34566777778888887766543

>PLN03150 hypothetical protein; Provisional

Probab=98.63  E-value=8.3e-08  Score=106.44  Aligned_cols=103  Identities=21%  Similarity=0.372  Sum_probs=75.2

Q ss_pred             CccEEEeCCCcCC-cCCccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCC-ccchhhhcCCCCCEEccc
Q 005744          258 ELRVLDLTGFRFH-SLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLS  333 (679)
Q Consensus       258 ~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~  333 (679)
                      .++.|+|++|.+. .+|..++++++|++|+|++|.+..  |..++.+++|++|++++|+++ .+|..++++++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            3677788887776 567778888888888888887765  667788888888888888777 677778888888888888


Q ss_pred             CCccccccCcccccC-CCCCcEEEccCCc
Q 005744          334 NCSKLKEIRPNVISN-LTRLEELYMGNSF  361 (679)
Q Consensus       334 ~~~~l~~lp~~~l~~-l~~L~~L~l~~~~  361 (679)
                      +|.....+|.. ++. ..++..+++.+|.
T Consensus       499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChH-HhhccccCceEEecCCc
Confidence            75555566655 444 3456677777664

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.57  E-value=5.2e-10  Score=109.92  Aligned_cols=291  Identities=15%  Similarity=0.068  Sum_probs=150.5

Q ss_pred             cCCCEEEcCCcccCCc----ccccCCCCCcEEEecCC-CCCc--cchhhhcCCCCCEEcccCCccccccCccc-ccCCCC
Q 005744          280 INLRTLSLENCLVVDV----AIIGDLKKLEILSLKHS-SIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNV-ISNLTR  351 (679)
Q Consensus       280 ~~L~~L~L~~~~~~~~----~~i~~L~~L~~L~l~~~-~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~-l~~l~~  351 (679)
                      ..|+.|.++||.-...    ..-.+.+++++|++.+| +++.  +-.--..+.+|++|++..|..++...-.. ....++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            3578888998875441    33456788899999888 5552  22223468899999999988887764332 234788


Q ss_pred             CcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEec
Q 005744          352 LEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQ  431 (679)
Q Consensus       352 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~  431 (679)
                      |++|++++|.-....     ..-.-......++.+...++.-.  +    +..|..          .-..+..+..+++.
T Consensus       218 L~~lNlSwc~qi~~~-----gv~~~~rG~~~l~~~~~kGC~e~--~----le~l~~----------~~~~~~~i~~lnl~  276 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGN-----GVQALQRGCKELEKLSLKGCLEL--E----LEALLK----------AAAYCLEILKLNLQ  276 (483)
T ss_pred             HHHhhhccCchhhcC-----cchHHhccchhhhhhhhcccccc--c----HHHHHH----------HhccChHhhccchh
Confidence            999999888532110     00011122333333333322110  0    000000          00112222233333


Q ss_pred             CCCcceech--hHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeecc
Q 005744          432 LNNSTYLGY--GMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLH  509 (679)
Q Consensus       432 ~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~  509 (679)
                      .+..+...+  .+...+..|+.|+.++|....+.+-+-.+ ++.++|+.|.+.+|.......- .....+.+.|+.+++.
T Consensus       277 ~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg-~~~~~L~~l~l~~c~~fsd~~f-t~l~rn~~~Le~l~~e  354 (483)
T KOG4341|consen  277 HCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG-QHCHNLQVLELSGCQQFSDRGF-TMLGRNCPHLERLDLE  354 (483)
T ss_pred             hhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh-cCCCceEEEeccccchhhhhhh-hhhhcCChhhhhhccc
Confidence            332222111  11223456677777776665544333222 4567777777777765433210 1111356667777776


Q ss_pred             ccccccccccCcccCCCCccccCCccEEEEecCCCcccccc---HHHHHHhhcCcEEEEcccccchhhhccccccccCCC
Q 005744          510 NLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP---FSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKN  586 (679)
Q Consensus       510 ~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~---~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~  586 (679)
                      +|.....-.   +  .+-..+.|.|+.|.++.|..+++...   .....++..|+.+++.+||.+.+-..+         
T Consensus       355 ~~~~~~d~t---L--~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le---------  420 (483)
T KOG4341|consen  355 ECGLITDGT---L--ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE---------  420 (483)
T ss_pred             ccceehhhh---H--hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH---------
Confidence            665443321   1  11134567777777777665554310   011234556777777777766554332         


Q ss_pred             CccccccccccceeeccCCCCccc
Q 005744          587 GSISGVYFRKLHFLKLQHLPQLTS  610 (679)
Q Consensus       587 ~~~~l~~l~~L~~L~l~~cp~L~~  610 (679)
                         .+...++|+.+++.+|.....
T Consensus       421 ---~l~~c~~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  421 ---HLSICRNLERIELIDCQDVTK  441 (483)
T ss_pred             ---HHhhCcccceeeeechhhhhh
Confidence               344666677777766655544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.55  E-value=7.3e-08  Score=71.33  Aligned_cols=58  Identities=31%  Similarity=0.470  Sum_probs=27.7

Q ss_pred             ceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcc
Q 005744          233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL  291 (679)
Q Consensus       233 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~  291 (679)
                      +|++|++++|.+. .+|...|.++++|++|++++|.++.+ |..|.++++|++|++++|.
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4444555544443 44444445555555555555555444 2344455555555554443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.52  E-value=1e-07  Score=70.53  Aligned_cols=58  Identities=29%  Similarity=0.457  Sum_probs=41.7

Q ss_pred             CCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCC
Q 005744          257 TELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSI  314 (679)
Q Consensus       257 ~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l  314 (679)
                      ++|++|++++|.++.+| ..|.++++|++|++++|.+..  +..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46777788877777775 456777777777777777766  45677777777777777653

...

>PLN03150 hypothetical protein; Provisional

Probab=98.45  E-value=4e-07  Score=101.06  Aligned_cols=104  Identities=25%  Similarity=0.297  Sum_probs=80.0

Q ss_pred             CCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCC-ccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEc
Q 005744          281 NLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM  357 (679)
Q Consensus       281 ~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l  357 (679)
                      .++.|+|++|.+..  |..++++++|++|+|++|.+. .+|..++.+++|+.|++++|.....+|.. ++++++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence            47888999998876  788999999999999999887 78888999999999999985444466655 889999999999


Q ss_pred             cCCcccceeccCCcCChhhhhc-CCCCceEEeecCC
Q 005744          358 GNSFTQWKVEGQSNASLGELKQ-LSRLTTLEVHIPD  392 (679)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~  392 (679)
                      ++|.+.+..+       ..+.. ..++..+++.+|.
T Consensus       498 s~N~l~g~iP-------~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        498 NGNSLSGRVP-------AALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCCcccccCC-------hHHhhccccCceEEecCCc
Confidence            9887754332       33333 2356677777764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.41  E-value=2.9e-08  Score=105.21  Aligned_cols=170  Identities=22%  Similarity=0.318  Sum_probs=93.3

Q ss_pred             CeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCc
Q 005744          212 PTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC  290 (679)
Q Consensus       212 l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~  290 (679)
                      +..+++..|.+..+-..+ .+.+|..|++..|.+.. +... +..+.+|++|++++|.|+.+.. +..+..|+.|++.+|
T Consensus        74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~-l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N  150 (414)
T KOG0531|consen   74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENL-LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGN  150 (414)
T ss_pred             HHhhccchhhhhhhhcccccccceeeeeccccchhh-cccc-hhhhhcchheeccccccccccc-hhhccchhhheeccC
Confidence            334445555554422222 56666666666666552 2221 2556677777777777766642 555666777777777


Q ss_pred             ccCCcccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccC
Q 005744          291 LVVDVAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ  369 (679)
Q Consensus       291 ~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~  369 (679)
                      .+.....+..+..|+.+++++|.+..+... ...+.+|+.+.+.+ +.+..+..  +..+..+..+++..+.+.      
T Consensus       151 ~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~-n~i~~i~~--~~~~~~l~~~~l~~n~i~------  221 (414)
T KOG0531|consen  151 LISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG-NSIREIEG--LDLLKKLVLLSLLDNKIS------  221 (414)
T ss_pred             cchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC-Cchhcccc--hHHHHHHHHhhcccccce------
Confidence            776666666677777777777766666543 45666666666666 34443322  233334444444444432      


Q ss_pred             CcCChhhhhcCCC--CceEEeecCCCccC
Q 005744          370 SNASLGELKQLSR--LTTLEVHIPDAQVM  396 (679)
Q Consensus       370 ~~~~~~~l~~l~~--L~~L~l~~~~~~~~  396 (679)
                         .+..+..+..  |+.++++.+.+...
T Consensus       222 ---~~~~l~~~~~~~L~~l~l~~n~i~~~  247 (414)
T KOG0531|consen  222 ---KLEGLNELVMLHLRELYLSGNRISRS  247 (414)
T ss_pred             ---eccCcccchhHHHHHHhcccCccccc
Confidence               1112222222  56666666665544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.39  E-value=4e-08  Score=104.10  Aligned_cols=128  Identities=27%  Similarity=0.372  Sum_probs=90.3

Q ss_pred             CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCCcccccCCCCCcEEEe
Q 005744          230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL  309 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l  309 (679)
                      .+..++.+.+..|.+.. +- +.+..+++|.+|++.+|.++.+...+..+++|++|++++|.|.....+..+..|+.|++
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~-~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-IL-NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL  147 (414)
T ss_pred             HhHhHHhhccchhhhhh-hh-cccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhee
Confidence            45566666666666542 11 11367788888888888888776657778888888888888888777777888888888


Q ss_pred             cCCCCCccchhhhcCCCCCEEcccCCccccccCc-ccccCCCCCcEEEccCCcc
Q 005744          310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFT  362 (679)
Q Consensus       310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~  362 (679)
                      .+|.|+.+. ++..+++|+.+++++ +.+..+.. . +..+.+++.+++.+|.+
T Consensus       148 ~~N~i~~~~-~~~~l~~L~~l~l~~-n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  148 SGNLISDIS-GLESLKSLKLLDLSY-NRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             ccCcchhcc-CCccchhhhcccCCc-chhhhhhhhh-hhhccchHHHhccCCch
Confidence            888877765 355677888888877 55666554 2 35667777777777755

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.35  E-value=1.3e-08  Score=106.81  Aligned_cols=127  Identities=26%  Similarity=0.283  Sum_probs=103.3

Q ss_pred             CCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCCcccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCC
Q 005744          257 TELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNC  335 (679)
Q Consensus       257 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~  335 (679)
                      ..|.+.+.++|.+..+-.++.-+++|+.|+|++|++.+...+..+++|++|||++|.++.+|.- ...+. |+.|.+++ 
T Consensus       164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-  241 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-  241 (1096)
T ss_pred             hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecc-
Confidence            4678888999999888888889999999999999999877899999999999999999988862 33344 99999998 


Q ss_pred             ccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCC
Q 005744          336 SKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDA  393 (679)
Q Consensus       336 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  393 (679)
                      |.++++-.  +.+|.+|+.|++++|.+...      ..+..|..|..|+.|.+.+|-+
T Consensus       242 N~l~tL~g--ie~LksL~~LDlsyNll~~h------seL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  242 NALTTLRG--IENLKSLYGLDLSYNLLSEH------SELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cHHHhhhh--HHhhhhhhccchhHhhhhcc------hhhhHHHHHHHHHHHhhcCCcc
Confidence            77777743  78999999999999876421      3345666777888888888754

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=3.5e-08  Score=92.94  Aligned_cols=65  Identities=18%  Similarity=0.201  Sum_probs=38.9

Q ss_pred             hhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCC
Q 005744          471 EGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCH  543 (679)
Q Consensus       471 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  543 (679)
                      ..+|+|.+|+|++|..++.  +....+..|+.|++|.++.|..+.  |...+.    ....|+|..|++.+|-
T Consensus       310 ~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~----l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHLSLSRCYDII--PETLLE----LNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HhCCceeeeccccccccCc--hHHHHHHhcchheeeehhhhcCCC--hHHeee----eccCcceEEEEecccc
Confidence            4577777777777765543  222333567777777777775542  111222    4566777777777763

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.22  E-value=5.4e-08  Score=102.19  Aligned_cols=124  Identities=21%  Similarity=0.189  Sum_probs=98.9

Q ss_pred             CCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccC
Q 005744          281 NLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN  359 (679)
Q Consensus       281 ~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~  359 (679)
                      .|.+-+.+.|.+.. -.++.-++.|+.|+|++|++++.. .+..|++|++|||+. |.++.+|.-..... +|+.|.+++
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~lrn  241 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNLRN  241 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhh-hheeeeecc
Confidence            46666777777776 677888999999999999999876 689999999999999 88999987433334 499999999


Q ss_pred             CcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc---cccccceeEEEeCCcc
Q 005744          360 SFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL---VFVELERFRICIGDVW  416 (679)
Q Consensus       360 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~  416 (679)
                      |.+         ..+..+.+|.+|+.|++++|-+.....-.   .+..|+.|.+..+.++
T Consensus       242 N~l---------~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  242 NAL---------TTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cHH---------HhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            977         35567888999999999999776554433   6677888888766644

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.22  E-value=4.4e-07  Score=100.28  Aligned_cols=126  Identities=21%  Similarity=0.274  Sum_probs=93.5

Q ss_pred             hcCCCeEEEccCCCc--ccCCccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCC
Q 005744          208 IDEAPTAISIPFRGI--YELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLR  283 (679)
Q Consensus       208 ~~~~l~~l~l~~~~~--~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~  283 (679)
                      ...++++|++++...  ...+..+  .+|.|++|.+.+-.+...--...+.++++|+.||+|+++++.+ .++++|++|+
T Consensus       120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ  198 (699)
T ss_pred             HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence            346789999988554  2333333  6899999999876654333344568899999999999999988 6799999999


Q ss_pred             EEEcCCcccCC---cccccCCCCCcEEEecCCCCCccchhh-------hcCCCCCEEcccC
Q 005744          284 TLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPREI-------GQLTCLKLLDLSN  334 (679)
Q Consensus       284 ~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i-------~~L~~L~~L~l~~  334 (679)
                      .|.+++-.+..   ...+.+|++|++||+|...-..-+..+       ..|++||.||.++
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            99999887776   567888999999999987544333211       2377777777776

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=2.6e-08  Score=93.81  Aligned_cols=175  Identities=21%  Similarity=0.187  Sum_probs=126.9

Q ss_pred             CCCeEEEccCCCcc--cCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCc-CCc--CCccccCCcCCC
Q 005744          210 EAPTAISIPFRGIY--ELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR-FHS--LPSSLGCLINLR  283 (679)
Q Consensus       210 ~~l~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~--lp~~i~~l~~L~  283 (679)
                      .+++++++++..++  .+...+ .+.+|+.|.+.++.+...+-..+ .+-.+|+.|+++.++ +++  +.--+.+|+.|.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            46889999988773  333333 78899999999988776665554 677899999999876 553  233467899999


Q ss_pred             EEEcCCcccCCcc---cccC-CCCCcEEEecCC--CCC--ccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEE
Q 005744          284 TLSLENCLVVDVA---IIGD-LKKLEILSLKHS--SIE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL  355 (679)
Q Consensus       284 ~L~L~~~~~~~~~---~i~~-L~~L~~L~l~~~--~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L  355 (679)
                      .|++++|....+.   .+.+ -.+|..|+++|+  ++.  .+..-..++++|.+|||++|..++.-....|.+++.|++|
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            9999999876621   1111 257888999997  222  3433456899999999999887776333347789999999


Q ss_pred             EccCCcccceeccCCcCChhhhhcCCCCceEEeecC
Q 005744          356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIP  391 (679)
Q Consensus       356 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  391 (679)
                      .++.|+..      .+..+-++...+.|.+|++.+.
T Consensus       344 SlsRCY~i------~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  344 SLSRCYDI------IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ehhhhcCC------ChHHeeeeccCcceEEEEeccc
Confidence            99998642      1234456778888888888765

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.12  E-value=5e-07  Score=87.40  Aligned_cols=86  Identities=16%  Similarity=0.203  Sum_probs=48.0

Q ss_pred             CCcceeeeeeccCCcccC---CCchhhcCCCCccEEEeCCCcC----CcCCcc-------ccCCcCCCEEEcCCcccCC-
Q 005744          230 GFLKLKLFLFFTENLSLQ---IPDPFFEGMTELRVLDLTGFRF----HSLPSS-------LGCLINLRTLSLENCLVVD-  294 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~l----~~lp~~-------i~~l~~L~~L~L~~~~~~~-  294 (679)
                      .+..++.+++++|.+...   .-...+.+.+.||.-++++-.-    .++|+.       +-.+++|++|+||.|-+.. 
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            566777777777765432   1122345666777777776421    133432       3345567777777766543 


Q ss_pred             -c----ccccCCCCCcEEEecCCCCC
Q 005744          295 -V----AIIGDLKKLEILSLKHSSIE  315 (679)
Q Consensus       295 -~----~~i~~L~~L~~L~l~~~~l~  315 (679)
                       +    .-+.+...|++|.|.+|.+.
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCC
Confidence             2    22445566666666666555

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.12  E-value=2.8e-06  Score=57.41  Aligned_cols=37  Identities=41%  Similarity=0.542  Sum_probs=17.6

Q ss_pred             CccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC
Q 005744          258 ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD  294 (679)
Q Consensus       258 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~  294 (679)
                      +|++|++++|+++.+|..+++|++|++|++++|.+.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            4455555555555554445555555555555554443

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.04  E-value=1.4e-06  Score=96.34  Aligned_cols=81  Identities=21%  Similarity=0.254  Sum_probs=35.5

Q ss_pred             CcCCCEEEcCCcccCC---cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEE
Q 005744          279 LINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL  355 (679)
Q Consensus       279 l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L  355 (679)
                      ||.||.|.+++-.+..   -.-..++++|..||+++|+++.+ .++++|++|+.|.+.+-.....-.-..+.+|++|+.|
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL  225 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL  225 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence            4445555554443332   12233445555555555555544 4455555555555444211110101114445555555


Q ss_pred             EccCC
Q 005744          356 YMGNS  360 (679)
Q Consensus       356 ~l~~~  360 (679)
                      |++..
T Consensus       226 DIS~~  230 (699)
T KOG3665|consen  226 DISRD  230 (699)
T ss_pred             ecccc
Confidence            55543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.96  E-value=1.2e-05  Score=54.34  Aligned_cols=32  Identities=44%  Similarity=0.646  Sum_probs=16.0

Q ss_pred             CCcEEEecCCCCCccchhhhcCCCCCEEcccC
Q 005744          303 KLEILSLKHSSIEQLPREIGQLTCLKLLDLSN  334 (679)
Q Consensus       303 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~  334 (679)
                      +|++|++++|+|+.+|..+++|++|++|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~   33 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN   33 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence            45555555555555555455555555555555

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.94  E-value=8.7e-07  Score=85.79  Aligned_cols=183  Identities=14%  Similarity=0.117  Sum_probs=119.3

Q ss_pred             cCCCeEEEccCCCcc--cCCc---cc-CCcceeeeeeccCCcccCCC------------chhhcCCCCccEEEeCCCcCC
Q 005744          209 DEAPTAISIPFRGIY--ELPE---RL-GFLKLKLFLFFTENLSLQIP------------DPFFEGMTELRVLDLTGFRFH  270 (679)
Q Consensus       209 ~~~l~~l~l~~~~~~--~l~~---~~-~~~~L~~L~l~~~~~~~~~~------------~~~~~~l~~L~~L~l~~~~l~  270 (679)
                      .++++.++||+|-+.  .++.   .+ .+..|+.|.+.+|.+...--            ..-...-+.||++....|++.
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            347888899888772  2332   22 67888888888776531100            011245678899999888876


Q ss_pred             cC-----CccccCCcCCCEEEcCCcccCCc------ccccCCCCCcEEEecCCCCC-----ccchhhhcCCCCCEEcccC
Q 005744          271 SL-----PSSLGCLINLRTLSLENCLVVDV------AIIGDLKKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSN  334 (679)
Q Consensus       271 ~l-----p~~i~~l~~L~~L~L~~~~~~~~------~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~  334 (679)
                      .-     -..+...+.|+.+.++.|.+...      ..+..+++|++||++.|-++     .+...+..+++|++|++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            43     33466678888888888877651      45778889999999988666     3444566778889998888


Q ss_pred             Cccccc----cCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCc
Q 005744          335 CSKLKE----IRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ  394 (679)
Q Consensus       335 ~~~l~~----lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  394 (679)
                      |.--..    +-...-...++|++|.+.+|.+......   .....+...+.|+.|++++|.+.
T Consensus       251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~---~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL---ALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH---HHHHHHhcchhhHHhcCCccccc
Confidence            742211    1111112367889999888876532211   12233445788888888888774

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.92  E-value=1e-06  Score=73.59  Aligned_cols=108  Identities=15%  Similarity=0.228  Sum_probs=68.9

Q ss_pred             CeEEEccCCCcccCCccc----CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEc
Q 005744          212 PTAISIPFRGIYELPERL----GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL  287 (679)
Q Consensus       212 l~~l~l~~~~~~~l~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L  287 (679)
                      ...++++.+.+..+++..    +..+|...++++|.+. .+|+.+-..++.++.|++++|.+.++|..+..++.||.|++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            344566666665444432    4556666666666654 56666655666677777777777777766777777777777


Q ss_pred             CCcccCC-cccccCCCCCcEEEecCCCCCccchh
Q 005744          288 ENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPRE  320 (679)
Q Consensus       288 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~  320 (679)
                      +.|++.. |..|..|.+|-+|+..++.+..+|..
T Consensus       108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             ccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            7776666 66666666666666666666666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.76  E-value=4.1e-05  Score=68.74  Aligned_cols=62  Identities=29%  Similarity=0.371  Sum_probs=26.2

Q ss_pred             cCCCCccEEEeCCCcCCcCCcccc-CCcCCCEEEcCCcccCC---cccccCCCCCcEEEecCCCCC
Q 005744          254 EGMTELRVLDLTGFRFHSLPSSLG-CLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIE  315 (679)
Q Consensus       254 ~~l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~  315 (679)
                      ..++.|..|.+.+|+|+.+-+.+. .+++|..|.+.+|.+..   ...+..++.|++|.+-+|.++
T Consensus        61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchh
Confidence            344444444444444444422222 23334444444444433   233334444444444444433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.75  E-value=7e-05  Score=76.42  Aligned_cols=149  Identities=15%  Similarity=0.156  Sum_probs=92.1

Q ss_pred             hhccccceEeeecCCCeeEEEeCCCcccccc-ccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccc
Q 005744          471 EGFARLRHLHVHNGPEILHILNSDGRVGTFP-LLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLF  549 (679)
Q Consensus       471 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~  549 (679)
                      ..++++++|++++| .++.++       .+| +|++|.+.+|.+++.++.. +|        ++|+.|++++|..+..+|
T Consensus        49 ~~~~~l~~L~Is~c-~L~sLP-------~LP~sLtsL~Lsnc~nLtsLP~~-LP--------~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         49 EEARASGRLYIKDC-DIESLP-------VLPNELTEITIENCNNLTTLPGS-IP--------EGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             HHhcCCCEEEeCCC-CCcccC-------CCCCCCcEEEccCCCCcccCCch-hh--------hhhhheEccCcccccccc
Confidence            45788999999998 566654       244 6999999999999877632 23        589999999998887764


Q ss_pred             cHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCccc
Q 005744          550 PFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGII  629 (679)
Q Consensus       550 ~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~  629 (679)
                              ++|+.|++.+ .....+..                -.++|++|.+.++............|     ++|+.+
T Consensus       112 --------~sLe~L~L~~-n~~~~L~~----------------LPssLk~L~I~~~n~~~~~~lp~~LP-----sSLk~L  161 (426)
T PRK15386        112 --------ESVRSLEIKG-SATDSIKN----------------VPNGLTSLSINSYNPENQARIDNLIS-----PSLKTL  161 (426)
T ss_pred             --------cccceEEeCC-CCCccccc----------------CcchHhheeccccccccccccccccC-----CcccEE
Confidence                    3688888763 33333321                23468888875432111111111112     456777


Q ss_pred             cCCCCCCCccCccccccCCCcceeecccccc--ccccCCCcc
Q 005744          630 AEGDPKDFTSLFNERVVFPSLKKLKLSSINV--EKIWLNSFS  669 (679)
Q Consensus       630 ~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l--~~l~~~~~~  669 (679)
                      .+.+|.... +|..  ..++|+.|.++.+..  ..++...+|
T Consensus       162 ~Is~c~~i~-LP~~--LP~SLk~L~ls~n~~~sLeI~~~sLP  200 (426)
T PRK15386        162 SLTGCSNII-LPEK--LPESLQSITLHIEQKTTWNISFEGFP  200 (426)
T ss_pred             EecCCCccc-Cccc--ccccCcEEEecccccccccCcccccc
Confidence            777777552 2211  125899999987632  234544444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.73  E-value=0.00014  Score=74.29  Aligned_cols=131  Identities=20%  Similarity=0.250  Sum_probs=81.3

Q ss_pred             cCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCC-cCCcCCccccCCcCCCEEEc
Q 005744          209 DEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGF-RFHSLPSSLGCLINLRTLSL  287 (679)
Q Consensus       209 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~L  287 (679)
                      +..+++|++++|.+..+|.  --.+|++|.++++.....+|..+   .++|++|++++| .+..+|..      |+.|++
T Consensus        51 ~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L  119 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSLEI  119 (426)
T ss_pred             hcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cceEEe
Confidence            4678899999998888883  22369999998876655677544   358899999988 67777754      666777


Q ss_pred             CCcccCCcccccCC-CCCcEEEecCCC-C--CccchhhhcC-CCCCEEcccCCccccccCcccccCCCCCcEEEccCC
Q 005744          288 ENCLVVDVAIIGDL-KKLEILSLKHSS-I--EQLPREIGQL-TCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS  360 (679)
Q Consensus       288 ~~~~~~~~~~i~~L-~~L~~L~l~~~~-l--~~lp~~i~~L-~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~  360 (679)
                      +++....   +..+ .+|+.|.+.+++ .  ..+|.   .+ .+|++|++.+|..+ .+|.. +.  .+|+.|.++.+
T Consensus       120 ~~n~~~~---L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~-LP--~SLk~L~ls~n  187 (426)
T PRK15386        120 KGSATDS---IKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEK-LP--ESLQSITLHIE  187 (426)
T ss_pred             CCCCCcc---cccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccc-cc--ccCcEEEeccc
Confidence            6554322   1222 235566664322 1  11121   12 47888888876643 34433 33  47777777654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.71  E-value=5.6e-05  Score=67.87  Aligned_cols=103  Identities=18%  Similarity=0.178  Sum_probs=83.9

Q ss_pred             cCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC--CccccCCcCCCEEE
Q 005744          209 DEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL--PSSLGCLINLRTLS  286 (679)
Q Consensus       209 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~  286 (679)
                      ......+++++|++..++....+++|.+|.+..|.++ .+.+.+-..+++|..|.+.+|++.++  -..+..++.|++|.
T Consensus        41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccccceecccccchhhcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            3467789999999988877778999999999999988 55555656788999999999998865  33477899999999


Q ss_pred             cCCcccCC-c----ccccCCCCCcEEEecCC
Q 005744          287 LENCLVVD-V----AIIGDLKKLEILSLKHS  312 (679)
Q Consensus       287 L~~~~~~~-~----~~i~~L~~L~~L~l~~~  312 (679)
                      +-+|.... .    --+.++++|++||+.+-
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            99998876 2    45778888888888764

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.69  E-value=4.5e-06  Score=69.81  Aligned_cols=111  Identities=23%  Similarity=0.302  Sum_probs=85.0

Q ss_pred             cceeeeeeccCCcccCCCchh--hcCCCCccEEEeCCCcCCcCCccccCC-cCCCEEEcCCcccCC-cccccCCCCCcEE
Q 005744          232 LKLKLFLFFTENLSLQIPDPF--FEGMTELRVLDLTGFRFHSLPSSLGCL-INLRTLSLENCLVVD-VAIIGDLKKLEIL  307 (679)
Q Consensus       232 ~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~l~~lp~~i~~l-~~L~~L~L~~~~~~~-~~~i~~L~~L~~L  307 (679)
                      ..+..++|++|.+. .+++..  +....+|...++++|.++++|+.+... +.+.+|++.+|.+.+ |..+..++.|+.|
T Consensus        27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL  105 (177)
T ss_pred             HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence            34555667666543 233322  245678888899999999998877644 488899999999988 8889999999999


Q ss_pred             EecCCCCCccchhhhcCCCCCEEcccCCccccccCcc
Q 005744          308 SLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPN  344 (679)
Q Consensus       308 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~  344 (679)
                      +++.|.+...|..|..|.+|-.|+..+ +....+|-+
T Consensus       106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~-na~~eid~d  141 (177)
T KOG4579|consen  106 NLRFNPLNAEPRVIAPLIKLDMLDSPE-NARAEIDVD  141 (177)
T ss_pred             ccccCccccchHHHHHHHhHHHhcCCC-CccccCcHH
Confidence            999999998898888888888888887 566666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=1.4e-05  Score=75.69  Aligned_cols=81  Identities=26%  Similarity=0.343  Sum_probs=48.8

Q ss_pred             cCCCCccEEEeCCCcCCc---CCccccCCcCCCEEEcCCcccCC-cccc-cCCCCCcEEEecCCCCC--ccchhhhcCCC
Q 005744          254 EGMTELRVLDLTGFRFHS---LPSSLGCLINLRTLSLENCLVVD-VAII-GDLKKLEILSLKHSSIE--QLPREIGQLTC  326 (679)
Q Consensus       254 ~~l~~L~~L~l~~~~l~~---lp~~i~~l~~L~~L~L~~~~~~~-~~~i-~~L~~L~~L~l~~~~l~--~lp~~i~~L~~  326 (679)
                      ....+++.|||.+|.+..   +-..+.++++|++|+++.|++.. +... ..+.+|++|-|.|+.+.  .....+..++.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            345566667777766653   33334566777777777776655 4444 35567777777776443  44445556666


Q ss_pred             CCEEcccC
Q 005744          327 LKLLDLSN  334 (679)
Q Consensus       327 L~~L~l~~  334 (679)
                      +++|+++.
T Consensus       148 vtelHmS~  155 (418)
T KOG2982|consen  148 VTELHMSD  155 (418)
T ss_pred             hhhhhhcc
Confidence            66666665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.45  E-value=2.7e-05  Score=73.91  Aligned_cols=65  Identities=20%  Similarity=0.248  Sum_probs=30.0

Q ss_pred             ccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCc
Q 005744          473 FARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRV  545 (679)
Q Consensus       473 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L  545 (679)
                      ||++..+.+..|+- +.... ......+|.+-.|.+.. +++.+|...     .+...||.|..|.+.+.|-+
T Consensus       198 Fpnv~sv~v~e~Pl-K~~s~-ek~se~~p~~~~LnL~~-~~idswasv-----D~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPL-KTESS-EKGSEPFPSLSCLNLGA-NNIDSWASV-----DALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             cccchheeeecCcc-cchhh-cccCCCCCcchhhhhcc-cccccHHHH-----HHHcCCchhheeeccCCccc
Confidence            45555555555541 11111 11223455555555555 455554321     11345666666666654433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.12  E-value=2.4e-05  Score=73.54  Aligned_cols=82  Identities=27%  Similarity=0.385  Sum_probs=57.1

Q ss_pred             CcCCCEEEcCCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCc-ccccCCCCCcEEEc
Q 005744          279 LINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYM  357 (679)
Q Consensus       279 l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l  357 (679)
                      +.+.+.|++.||.+.++....+++.|++|.|+-|+|+.+.. +..+++|++|+|+. +.+.++.. ..+.++++|+.|.+
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhh
Confidence            45566777777777777777777888888888888777743 67778888888777 45555432 22566777777777


Q ss_pred             cCCcc
Q 005744          358 GNSFT  362 (679)
Q Consensus       358 ~~~~~  362 (679)
                      ..|..
T Consensus        96 ~ENPC  100 (388)
T KOG2123|consen   96 DENPC  100 (388)
T ss_pred             ccCCc
Confidence            76644

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.81  E-value=0.00056  Score=64.39  Aligned_cols=61  Identities=25%  Similarity=0.331  Sum_probs=30.6

Q ss_pred             CCCCccEEEeCCC--cCC-cCCccccCCcCCCEEEcCCcccCC---cccccCCCCCcEEEecCCCCC
Q 005744          255 GMTELRVLDLTGF--RFH-SLPSSLGCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIE  315 (679)
Q Consensus       255 ~l~~L~~L~l~~~--~l~-~lp~~i~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~  315 (679)
                      .+++|+.|+++.|  ++. .++....++++|++|++++|++..   ...+.++.+|..|++..|..+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence            4555555555555  222 333334444566666666655543   333444555555555555444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.76  E-value=0.00027  Score=77.08  Aligned_cols=92  Identities=23%  Similarity=0.242  Sum_probs=44.4

Q ss_pred             hhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCcccccc
Q 005744          471 EGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP  550 (679)
Q Consensus       471 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~  550 (679)
                      ..+++|+.|+++.|..+....- ......+|+|++|.+.+|..++.-.-..+     ...++.|++|++++|..+++-.-
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l-~~l~~~c~~L~~L~l~~c~~lt~~gl~~i-----~~~~~~L~~L~l~~c~~~~d~~l  313 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGL-SALASRCPNLETLSLSNCSNLTDEGLVSI-----AERCPSLRELDLSGCHGLTDSGL  313 (482)
T ss_pred             hhcCCcCccchhhhhccCchhH-HHHHhhCCCcceEccCCCCccchhHHHHH-----HHhcCcccEEeeecCccchHHHH
Confidence            3456666666666654322110 00012356677776666665433211111     23456677777777766544322


Q ss_pred             HHHHHHhhcCcEEEEccc
Q 005744          551 FSLVKNLLQLQKVKVTDC  568 (679)
Q Consensus       551 ~~~~~~l~~L~~L~i~~c  568 (679)
                      .....++++|+.|.+.++
T Consensus       314 ~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  314 EALLKNCPNLRELKLLSL  331 (482)
T ss_pred             HHHHHhCcchhhhhhhhc
Confidence            222444565555544443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.73  E-value=0.001  Score=62.62  Aligned_cols=81  Identities=25%  Similarity=0.320  Sum_probs=48.2

Q ss_pred             cCCCCccEEEeCCCcCC-----cCCccccCCcCCCEEEcCCcccCC-----c-------ccccCCCCCcEEEecCCCCC-
Q 005744          254 EGMTELRVLDLTGFRFH-----SLPSSLGCLINLRTLSLENCLVVD-----V-------AIIGDLKKLEILSLKHSSIE-  315 (679)
Q Consensus       254 ~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~L~~~~~~~-----~-------~~i~~L~~L~~L~l~~~~l~-  315 (679)
                      ..+..+..++||||.|.     .+...|.+-.+|+..+++.-....     +       +.+-++++|+..+|+.|.+. 
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            34778888888888875     355566667777777776543211     1       23445666666666666444 


Q ss_pred             ccch----hhhcCCCCCEEcccC
Q 005744          316 QLPR----EIGQLTCLKLLDLSN  334 (679)
Q Consensus       316 ~lp~----~i~~L~~L~~L~l~~  334 (679)
                      ..|.    -|.+-+.|.||.+++
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~N  129 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNN  129 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeec
Confidence            3332    244555566666655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.73  E-value=0.00081  Score=63.34  Aligned_cols=59  Identities=22%  Similarity=0.349  Sum_probs=25.1

Q ss_pred             CCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCc--ccCC--cccccCCCCCcEEEecCCCCC
Q 005744          256 MTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC--LVVD--VAIIGDLKKLEILSLKHSSIE  315 (679)
Q Consensus       256 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~--~~~~--~~~i~~L~~L~~L~l~~~~l~  315 (679)
                      +..|..|++.+..++.+- .+-.|++|++|.++.|  .+..  +....++++|++|++++|+++
T Consensus        42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            344444444444433221 1223445555555555  2222  222333355555555555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.62  E-value=0.00013  Score=68.64  Aligned_cols=96  Identities=25%  Similarity=0.266  Sum_probs=61.9

Q ss_pred             cceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC---cccccCCCCCcEEE
Q 005744          232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD---VAIIGDLKKLEILS  308 (679)
Q Consensus       232 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~  308 (679)
                      .+.+.|++.++.+. .+  ++..+|+.|++|.||-|.|+.+- .+..|++|+.|+|+.|.|.+   ...+.++++|++|.
T Consensus        19 ~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            34444555554443 11  24577888888888888888774 36778888888888888776   45667777778877


Q ss_pred             ecCCCCC-ccch-----hhhcCCCCCEEc
Q 005744          309 LKHSSIE-QLPR-----EIGQLTCLKLLD  331 (679)
Q Consensus       309 l~~~~l~-~lp~-----~i~~L~~L~~L~  331 (679)
                      |..|.-. .-+.     .+.-|++|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            7776222 2111     245666777664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.31  E-value=0.0019  Score=60.96  Aligned_cols=41  Identities=17%  Similarity=0.165  Sum_probs=24.9

Q ss_pred             cccCCcCCCEEEcCCcccCC--c----ccccCCCCCcEEEecCCCCC
Q 005744          275 SLGCLINLRTLSLENCLVVD--V----AIIGDLKKLEILSLKHSSIE  315 (679)
Q Consensus       275 ~i~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~  315 (679)
                      .+-+|++|+..+|+.|.+..  |    +.|.+-+.|.+|.+++|.+.
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            34566666666666665543  2    33556666777777776555

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.27  E-value=0.0011  Score=59.84  Aligned_cols=69  Identities=17%  Similarity=0.295  Sum_probs=52.3

Q ss_pred             ccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccch
Q 005744          498 GTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLK  572 (679)
Q Consensus       498 ~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~  572 (679)
                      ..+++++.|.+.+|..+.+|+-+.+.     +-.|+|+.|+|++|+++++- ....+..+++|+.|.+.+.+...
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~-----~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLG-----GLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhc-----ccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhh
Confidence            46777888888888888888755444     36788999999999888876 45567778888888888766443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.22  E-value=0.0015  Score=71.27  Aligned_cols=120  Identities=13%  Similarity=0.054  Sum_probs=83.6

Q ss_pred             hhcccccccccccCcccc--cccccchhhccccceEeeecC-CCeeEEEeC-CCccccccccceeeccccccccccccCc
Q 005744          446 LKRTEDLHLDELAGFKNV--VHELDDEEGFARLRHLHVHNG-PEILHILNS-DGRVGTFPLLESLFLHNLINLEKVCDGK  521 (679)
Q Consensus       446 l~~L~~L~l~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~-~~l~~~~~~-~~~~~~~~~L~~L~l~~c~~L~~~~~~~  521 (679)
                      .+.|+.|.+.+|..+...  ....   ..+++|+.|++++| ......... ......+++|+.|++..|..+++..-..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALA---LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHH---hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence            578899999988777652  2333   67899999999884 222211100 1122466899999999988766543222


Q ss_pred             ccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchh
Q 005744          522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKL  573 (679)
Q Consensus       522 ~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~  573 (679)
                      +.     ..+++|+.|.+.+|..+++..-......+++|++|++++|..+.+
T Consensus       264 l~-----~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d  310 (482)
T KOG1947|consen  264 LA-----SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD  310 (482)
T ss_pred             HH-----hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence            21     237899999999999877765455677899999999999988743

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.14  E-value=0.0022  Score=35.87  Aligned_cols=21  Identities=24%  Similarity=0.510  Sum_probs=13.8

Q ss_pred             CCcEEEecCCCCCccchhhhc
Q 005744          303 KLEILSLKHSSIEQLPREIGQ  323 (679)
Q Consensus       303 ~L~~L~l~~~~l~~lp~~i~~  323 (679)
                      +|++||+++|+++.+|.+|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            466777777777777766544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.01  E-value=0.0028  Score=35.47  Aligned_cols=21  Identities=43%  Similarity=0.659  Sum_probs=14.5

Q ss_pred             CccEEEeCCCcCCcCCccccC
Q 005744          258 ELRVLDLTGFRFHSLPSSLGC  278 (679)
Q Consensus       258 ~L~~L~l~~~~l~~lp~~i~~  278 (679)
                      +|++||+++|.++.+|++|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            467777777777777766554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.45  E-value=0.044  Score=47.36  Aligned_cols=101  Identities=17%  Similarity=0.331  Sum_probs=35.8

Q ss_pred             hhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCC
Q 005744          252 FFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCL  327 (679)
Q Consensus       252 ~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L  327 (679)
                      .|.++++|+.+.+.. .++.++ ..+.++.+|+.+.+.++ +..  ...+.++.+|+.+.+.. .+..++.. +..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344444455555443 233332 23444444555555443 322  23344444455555543 33333322 3335555


Q ss_pred             CEEcccCCccccccCcccccCCCCCcEEEcc
Q 005744          328 KLLDLSNCSKLKEIRPNVISNLTRLEELYMG  358 (679)
Q Consensus       328 ~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~  358 (679)
                      +.+.+..  .+..++...+.+. +|+.+.+.
T Consensus        84 ~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   84 KNIDIPS--NITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             CEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred             cccccCc--cccEEchhhhcCC-CceEEEEC
Confidence            5555543  2344444444444 55555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.45  E-value=0.052  Score=46.90  Aligned_cols=116  Identities=16%  Similarity=0.289  Sum_probs=64.0

Q ss_pred             CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCcccCC--cccccCCCCCcE
Q 005744          230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEI  306 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~  306 (679)
                      ++++|+.+.+.. .+ ..++...|..++.|+.+.+.++ +..++ ..+.++..|+.+.+.+ .+..  ...+....+|+.
T Consensus        10 ~~~~l~~i~~~~-~~-~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen   10 NCSNLESITFPN-TI-KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             T-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             CCCCCCEEEECC-Ce-eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence            667888888874 33 3677777889989999999885 77664 4577787899999976 3333  566778899999


Q ss_pred             EEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCc
Q 005744          307 LSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE  353 (679)
Q Consensus       307 L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~  353 (679)
                      +++..+ +..++.. +.+. +|+.+.+..  .+..++...+.+.++|+
T Consensus        86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             EEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG------
T ss_pred             cccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccCC
Confidence            999765 6666554 5565 888887764  55666666666666553

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.42  E-value=0.0082  Score=31.09  Aligned_cols=17  Identities=29%  Similarity=0.471  Sum_probs=12.0

Q ss_pred             CCcceeecccccccccc
Q 005744          648 PSLKKLKLSSINVEKIW  664 (679)
Q Consensus       648 p~L~~L~l~~~~l~~l~  664 (679)
                      |+|+.|+|++|+|+++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            68999999999999887

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.42  E-value=0.0025  Score=57.67  Aligned_cols=71  Identities=14%  Similarity=0.196  Sum_probs=54.7

Q ss_pred             ccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCC
Q 005744          528 DKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQ  607 (679)
Q Consensus       528 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~  607 (679)
                      ...++.++.|.+.+|..+.+..-...-+-.++|+.|+|++|+.+++-.-.            .+..|++|+.|.|.+.|.
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~------------~L~~lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA------------CLLKLKNLRRLHLYDLPY  188 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH------------HHHHhhhhHHHHhcCchh
Confidence            34678889999999998887632222234689999999999999876433            567899999999999876


Q ss_pred             ccc
Q 005744          608 LTS  610 (679)
Q Consensus       608 L~~  610 (679)
                      ...
T Consensus       189 v~~  191 (221)
T KOG3864|consen  189 VAN  191 (221)
T ss_pred             hhc
Confidence            554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.59  E-value=0.026  Score=29.21  Aligned_cols=16  Identities=31%  Similarity=0.617  Sum_probs=7.7

Q ss_pred             CCcEEEecCCCCCccc
Q 005744          303 KLEILSLKHSSIEQLP  318 (679)
Q Consensus       303 ~L~~L~l~~~~l~~lp  318 (679)
                      +|++|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5666666666666554

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.90  E-value=0.0032  Score=58.01  Aligned_cols=58  Identities=14%  Similarity=-0.007  Sum_probs=27.6

Q ss_pred             CCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCC
Q 005744          256 MTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSS  313 (679)
Q Consensus       256 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~  313 (679)
                      ++.|..||++.|.+..+|..++.+..++.+++..|..+. |.+++++++++++++.+|.
T Consensus        64 ~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   64 LTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             HHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence            344444445444444444444444444444444444444 4444444444444444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.41  E-value=0.07  Score=31.16  Aligned_cols=23  Identities=26%  Similarity=0.496  Sum_probs=20.8

Q ss_pred             CCCcceeeccccccccccCCCcc
Q 005744          647 FPSLKKLKLSSINVEKIWLNSFS  669 (679)
Q Consensus       647 ~p~L~~L~l~~~~l~~l~~~~~~  669 (679)
                      +++|+.|++++|.++.||.+.|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            47899999999999999998875

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.41  E-value=0.07  Score=31.16  Aligned_cols=23  Identities=26%  Similarity=0.496  Sum_probs=20.8

Q ss_pred             CCCcceeeccccccccccCCCcc
Q 005744          647 FPSLKKLKLSSINVEKIWLNSFS  669 (679)
Q Consensus       647 ~p~L~~L~l~~~~l~~l~~~~~~  669 (679)
                      +++|+.|++++|.++.||.+.|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            47899999999999999998875

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.63  E-value=0.005  Score=56.81  Aligned_cols=83  Identities=16%  Similarity=0.124  Sum_probs=71.6

Q ss_pred             hcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEc
Q 005744          253 FEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLD  331 (679)
Q Consensus       253 ~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~  331 (679)
                      +..++..++||++.|++..+-..++.+..|..|+++.+.+.. |..++.+..++.+++..|+.+..|.++++++.+++++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE  117 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence            366788889999998888887788888888899999888888 8889989899999998888899999999999999988


Q ss_pred             ccCC
Q 005744          332 LSNC  335 (679)
Q Consensus       332 l~~~  335 (679)
                      +.++
T Consensus       118 ~k~~  121 (326)
T KOG0473|consen  118 QKKT  121 (326)
T ss_pred             hccC
Confidence            8774

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.23  E-value=0.19  Score=29.27  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=14.2

Q ss_pred             CCCCcEEEecCCCCCccchhh
Q 005744          301 LKKLEILSLKHSSIEQLPREI  321 (679)
Q Consensus       301 L~~L~~L~l~~~~l~~lp~~i  321 (679)
                      |++|++|++++|.++.+|.++
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356777777777777777653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.23  E-value=0.19  Score=29.27  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=14.2

Q ss_pred             CCCCcEEEecCCCCCccchhh
Q 005744          301 LKKLEILSLKHSSIEQLPREI  321 (679)
Q Consensus       301 L~~L~~L~l~~~~l~~lp~~i  321 (679)
                      |++|++|++++|.++.+|.++
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356777777777777777653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=90.28  E-value=0.92  Score=53.91  Aligned_cols=150  Identities=13%  Similarity=0.219  Sum_probs=91.5

Q ss_pred             ceecc----CCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHhhccCCCc
Q 005744            9 DFLDW----LLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRK   84 (679)
Q Consensus         9 ~~~~~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~W~~~~~~l~~~~~~~   84 (679)
                      ..+++    +++.+|+.++|....+..-    -.+...++.+.|+|.|+++..++..++..... -......+.......
T Consensus       176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~  250 (903)
T PRK04841        176 LLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASH  250 (903)
T ss_pred             ceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchh
Confidence            44555    9999999999988765322    14457789999999999999888777643210 011111111000000


Q ss_pred             cccccccccee-eeccccCChhhHHHHHHhccccCCCCcccHHhHHHHHhhcccccccchHHHHHHHHHHHHHHHHhccc
Q 005744           85 IQGMDADLSSI-ELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASL  163 (679)
Q Consensus        85 ~~~~~~~~~~l-~~SY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~~~L~~~~~  163 (679)
                      +      ...+ .--++.||.+ .+..+...|+++   .++.+ +....     ....        -..+.+++|.+.++
T Consensus       251 ~------~~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~-l~~~l-----~~~~--------~~~~~L~~l~~~~l  306 (903)
T PRK04841        251 L------SDYLVEEVLDNVDLE-TRHFLLRCSVLR---SMNDA-LIVRV-----TGEE--------NGQMRLEELERQGL  306 (903)
T ss_pred             H------HHHHHHHHHhcCCHH-HHHHHHHhcccc---cCCHH-HHHHH-----cCCC--------cHHHHHHHHHHCCC
Confidence            1      1111 1236789998 899999999986   34433 22211     1111        11356778888888


Q ss_pred             ccc-CC-CCCceEehhhHHHHHHHHH
Q 005744          164 LFD-GD-SEDHAKMHRIIHAIAVSIA  187 (679)
Q Consensus       164 ~~~-~~-~~~~~~mhdli~~l~~~~~  187 (679)
                      +.. .+ +...|+.|++++++.....
T Consensus       307 ~~~~~~~~~~~yr~H~L~r~~l~~~l  332 (903)
T PRK04841        307 FIQRMDDSGEWFRYHPLFASFLRHRC  332 (903)
T ss_pred             eeEeecCCCCEEehhHHHHHHHHHHH
Confidence            653 22 3457899999999998764

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=83.25  E-value=24  Score=36.06  Aligned_cols=52  Identities=15%  Similarity=0.090  Sum_probs=38.9

Q ss_pred             CceeccCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHH
Q 005744            8 EDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIAN   60 (679)
Q Consensus         8 ~~~~~~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~   60 (679)
                      .++++++++.++..+++.+.+......-+ .+....|++.|+|.|-.+..+..
T Consensus       173 ~~~~l~~~~~~e~~~il~~~~~~~~~~~~-~~~~~~ia~~~~G~pR~a~~~l~  224 (328)
T PRK00080        173 IVQRLEFYTVEELEKIVKRSARILGVEID-EEGALEIARRSRGTPRIANRLLR  224 (328)
T ss_pred             eeeecCCCCHHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHcCCCchHHHHHHH
Confidence            46899999999999999998863322222 46788999999999955544443

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=81.97  E-value=21  Score=35.97  Aligned_cols=53  Identities=13%  Similarity=0.142  Sum_probs=39.4

Q ss_pred             CCceeccCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHH
Q 005744            7 SEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIAN   60 (679)
Q Consensus         7 ~~~~~~~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~   60 (679)
                      ..++++++++.+|..+++.+.+......-+ .+....|++.|+|.|-.+..++.
T Consensus       151 ~~~~~l~~l~~~e~~~il~~~~~~~~~~~~-~~al~~ia~~~~G~pR~~~~ll~  203 (305)
T TIGR00635       151 GIILRLEFYTVEELAEIVSRSAGLLNVEIE-PEAALEIARRSRGTPRIANRLLR  203 (305)
T ss_pred             ceEEEeCCCCHHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHhCCCcchHHHHHH
Confidence            356899999999999999998863222212 46778899999999966654444

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=80.10  E-value=0.95  Score=26.27  Aligned_cols=18  Identities=33%  Similarity=0.420  Sum_probs=16.6

Q ss_pred             CCcceeeccccccccccC
Q 005744          648 PSLKKLKLSSINVEKIWL  665 (679)
Q Consensus       648 p~L~~L~l~~~~l~~l~~  665 (679)
                      ++|+.|.+++|+|+++|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            689999999999999986

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=80.01  E-value=1.1  Score=26.12  Aligned_cols=17  Identities=24%  Similarity=0.241  Sum_probs=12.8

Q ss_pred             ccccceeeccCCCCccc
Q 005744          594 FRKLHFLKLQHLPQLTS  610 (679)
Q Consensus       594 l~~L~~L~l~~cp~L~~  610 (679)
                      +|+|++|+|++|+++++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            36788888888887765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	679
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	6e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	6e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-04

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 99.3 bits (247), Expect = 6e-22
 Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 11/187 (5%)

Query: 15  LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAV 74
           L  +E     E            E +  + +    G P  +     + + K+        
Sbjct: 293 LEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLN 352

Query: 75  NQLSNSNPRKIQGMDAD-----LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLL 129
           N+L +     ++ +          +++   E L   E +S      ++  G  I V    
Sbjct: 353 NKLESRGLVGVECITPYSYKSLAMALQRCVEVLSD-EDRSALAFAVVMPPGVDIPVKLWS 411

Query: 130 RYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGD--SEDHAKMHRIIHAIAVSIA 187
             +         + L+   + V   +  L     L  G        K+  IIH     + 
Sbjct: 412 CVIPVDICSNEEEQLD---DEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVV 468

Query: 188 AEKLLFN 194
             + + N
Sbjct: 469 DAQTIAN 475

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.3 bits (230), Expect = 1e-20
 Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 17/173 (9%)

Query: 222 IYELPERLGFLKLKLFLFFTENLSLQIPDPFFEG-MTELRVLDLTGFRFHSLPSSLGCLI 280
            +    R            T        D   +        L+L        P     L 
Sbjct: 45  RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLS 104

Query: 281 NLRTLSLENCLVVDV-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLK 339
           +L+ ++++   ++++   +     LE L+L  + +  LP  I  L  L+ L +  C +L 
Sbjct: 105 HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELT 164

Query: 340 EI--------RPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
           E+               L  L+ L +               AS+  L+ L  L
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL------PASIANLQNLKSL 211

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.3 bits (230), Expect = 2e-20
 Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 12/149 (8%)

Query: 224 ELPERLGFLKLKLFLFFTENL--------SLQIPDPFFEGMTELRVLDLTGFRFHSLPSS 275
           ELPE L             NL         ++        +  L+ L +      +L  +
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA 224

Query: 276 LGCLINLRTLSLENC--LVVDVAIIGDLKKLEILSLKH-SSIEQLPREIGQLTCLKLLDL 332
           +  L  L  L L  C  L     I G    L+ L LK  S++  LP +I +LT L+ LDL
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 333 SNCSKLKEIRPNVISNLTRLEELYMGNSF 361
             C  L  + P++I+ L     + +    
Sbjct: 285 RGCVNLSRL-PSLIAQLPANCIILVPPHL 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 40/179 (22%), Positives = 68/179 (37%), Gaps = 29/179 (16%)

Query: 222 IYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGF-RFHSLPSSLG--- 277
           + ELP+ +        L    N    +P      +  LR L +        LP  L    
Sbjct: 116 LMELPDTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 278 ------CLINLRTLSLENCLVVDV-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLL 330
                  L+NL++L LE   +  + A I +L+ L+ L +++S +  L   I  L  L+ L
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234

Query: 331 DLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSN------ASLGELKQLSRL 383
           DL  C+ L+   P +      L+ L + +           +        +  L QL +L
Sbjct: 235 DLRGCTALRNY-PPIFGGRAPLKRLILKD----------CSNLLTLPLDIHRLTQLEKL 282

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.8 bits (156), Expect = 4e-11
 Identities = 13/132 (9%), Positives = 33/132 (25%), Gaps = 14/132 (10%)

Query: 256 MTELRVLDLTG-FRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSI 314
            +    L   G          L                       +    +I +    ++
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS--AWRQANSNNPQIETRTGRAL 68

Query: 315 EQLPREIGQLTCLKL--LDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSN 371
           +     +   T      L+L +   L +  P+    L+ L+ + +      +        
Sbjct: 69  KATADLLEDATQPGRVALELRSV-PLPQF-PDQAFRLSHLQHMTIDAAGLMEL------P 120

Query: 372 ASLGELKQLSRL 383
            ++ +   L  L
Sbjct: 121 DTMQQFAGLETL 132

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 5/103 (4%)

Query: 222 IYELPERLGFLK-LKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGF-RFHSLPSSLGCL 279
           +  L   +  L  L+             P   F G   L+ L L       +LP  +  L
Sbjct: 218 LSALGPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 280 INLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPRE 320
             L  L L  C+ +    ++I  L    I+ +      QL + 
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 81.2 bits (201), Expect = 4e-16
 Identities = 19/163 (11%), Positives = 47/163 (28%), Gaps = 5/163 (3%)

Query: 228 RLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287
           R  F  L      ++     I         +   +         +  ++  L  LR   +
Sbjct: 155 REDFSDLIKDCINSDPQQKSIK-KSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYM 213

Query: 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVIS 347
            N   V   I    +       +         +   L  L  +++ NC  L ++ P  + 
Sbjct: 214 GNSPFVAENICEAWENENSEYAQQYKT--EDLKWDNLKDLTDVEVYNCPNLTKL-PTFLK 270

Query: 348 NLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
            L  ++ + +  N     +       +L +     ++  + + 
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.7 bits (197), Expect = 1e-15
 Identities = 25/176 (14%), Positives = 63/176 (35%), Gaps = 23/176 (13%)

Query: 225 LPERLGFLK-LKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP---------S 274
              +   LK L     +      ++P  F + + E++++++   R  S           +
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALA 299

Query: 275 SLGCLINLRTLSLENCLVVDVAI---IGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLD 331
                  ++ + +    +    +   +  +KKL +L   ++ +E      G    L  L+
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLN 359

Query: 332 LSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTL 386
           L+   ++ EI  N      ++E L    N             ++ + K +S ++ +
Sbjct: 360 LAYN-QITEIPANFCGFTEQVENLSFAHNKLK-------YIPNIFDAKSVSVMSAI 407

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.1 bits (172), Expect = 1e-12
 Identities = 22/157 (14%), Positives = 57/157 (36%), Gaps = 17/157 (10%)

Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSLENCL---VVDVAII 298
            L  ++P   F    +L  L+L   +   +P++  G    +  LS  +     + ++   
Sbjct: 341 QLEGKLPA--FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398

Query: 299 GDLKKLEILSLKH--------SSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
             +  +  +   +         + + L     +   +  ++LSN  ++ +    + S  +
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGS 457

Query: 351 RLEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTL 386
            L  + + GN  T+       + +    K    LT++
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENE-NFKNTYLLTSI 493

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 25/158 (15%), Positives = 49/158 (31%), Gaps = 14/158 (8%)

Query: 216 SIPFRGIYELPERLGFLKLKLFLFFTEN-LSLQIPDPFFEG-MTELRVLDLTGFRFHSLP 273
            IP   + +  E      L   +    N L+ ++ D F    +  L  +DL+   F   P
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFP 529

Query: 274 SSLGCLINLRTLSLENCLVVDV--------AIIGDLKKLEILSLKHSSIEQLPREIGQLT 325
           +       L+   + N                I     L  L +  + I ++  +I    
Sbjct: 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TP 587

Query: 326 CLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363
            + +LD+ +      I  + +          +    TQ
Sbjct: 588 NISVLDIKDN-PNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 4e-10
 Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 30/167 (17%)

Query: 216 SIPFRGIYELPERLGFLKLKLFLFFTENLSLQ------IPDPFFEGMTELRVLDLTGFRF 269
           S+  +    L          +      +++L        P   F   + L  ++L G   
Sbjct: 416 SVDGKNFDPLDPTPFKGI-NV-----SSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469

Query: 270 HSLP--------SSLGCLINLRTLSLENCL---VVDVAIIGDLKKLEILSLKHSSIEQLP 318
             +P         +      L ++ L       + D      L  L  + L ++S  + P
Sbjct: 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFP 529

Query: 319 REIGQLTCLKLLDLSNC------SKLKEIRPNVISNLTRLEELYMGN 359
            +    + LK   + N         L+E  P  I+    L +L +G+
Sbjct: 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREW-PEGITLCPSLTQLQIGS 575

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 17/158 (10%), Positives = 42/158 (26%), Gaps = 21/158 (13%)

Query: 243 NLSLQIPDPFFEGMTELRVLDL-----TGFRFHSLPSSLGCLINLRTLSLENCLVVDVAI 297
             S ++P      +TEL VL L             P  +   ++                
Sbjct: 92  GASGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK-TF 149

Query: 298 IGDLKKLEILSLKH------SSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351
           +    + +   L           + + +          +   + + +  +    +  LT+
Sbjct: 150 VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS-NNITFV-SKAVMRLTK 207

Query: 352 LEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTLEV 388
           L + YM  + F       ++     E +        + 
Sbjct: 208 LRQFYMGNSPFV-----AENICEAWENENSEYAQQYKT 240

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 80.6 bits (199), Expect = 6e-16
 Identities = 33/191 (17%), Positives = 68/191 (35%), Gaps = 23/191 (12%)

Query: 15  LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAV 74
           L  E+   +    V    KK+D       I+ +C G P+ +  I   L++  P  W+  +
Sbjct: 286 LGKEKGLEILSLFVNM--KKADLPEQAHSIIKECKGSPLVVSLIGALLRDF-PNRWEYYL 342

Query: 75  NQLSNSNPRKIQG-MDADLSSI----ELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLL 129
            QL N   ++I+     D  ++     +S E L+  ++K  +    +L+   ++    L 
Sbjct: 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLC 401

Query: 130 RYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLF-DGDSEDHA-KMHRIIHAIAVSIA 187
                                V  ++    + SLLF D + +     +H +         
Sbjct: 402 ILWD------------METEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449

Query: 188 AEKLLFNIQNV 198
             +L    + +
Sbjct: 450 CSQLQDLHKKI 460

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 79.9 bits (197), Expect = 1e-15
 Identities = 23/168 (13%), Positives = 51/168 (30%), Gaps = 6/168 (3%)

Query: 224 ELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLR 283
           +  +RL    L             I       + + ++ +LT  R   +  ++  L  L+
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITFISKAIQRLTKLQ 451

Query: 284 TLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP 343
            +   N           +   +  S      E        L  L  ++L NC  + ++ P
Sbjct: 452 IIYFANSPFT--YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL-P 508

Query: 344 NVISNLTRLEELYM-GNSFTQWKVEGQSNASL-GELKQLSRLTTLEVH 389
           + + +L  L+ L +  N              L  +     ++    + 
Sbjct: 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.1 bits (174), Expect = 7e-13
 Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 17/175 (9%)

Query: 224 ELPERLGFLKLKL-FLFFTENLSLQIPD---------PFFEGMTELRVLDLTGFRFHSLP 273
           +LP+ L  L  +L  L    N  +                +   ++++  +        P
Sbjct: 506 QLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564

Query: 274 SS--LGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQ-LTCLKLL 330
           +S  L  ++ L  L   +  V  +   G   KL  L L ++ IE++P +       ++ L
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624

Query: 331 DLSNCSKLKEIRPNV-ISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
             S+  KLK I       ++  +  +    N           +    +    S +
Sbjct: 625 GFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.5 bits (170), Expect = 2e-12
 Identities = 21/160 (13%), Positives = 46/160 (28%), Gaps = 22/160 (13%)

Query: 222 IYELPERLGFLKLKLFLFFTENLSL------QIPDPFFEGMTELRVLDLTG--------F 267
           I      +              ++L      + P   F   + +  + L+          
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715

Query: 268 RFHSLPSSLGCLINLRTLSL-ENCL--VVDVAIIGDLKKLEILSLKHSSIEQLPREIGQL 324
                  +      L T+ L  N L  + D      L  L  + + ++     P +    
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS 775

Query: 325 TCLKLLDLS-----NCSKLKEIRPNVISNLTRLEELYMGN 359
           + LK   +        +++    P  I+    L +L +G+
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.5 bits (170), Expect = 2e-12
 Identities = 18/171 (10%), Positives = 48/171 (28%), Gaps = 30/171 (17%)

Query: 222 IYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRF-HSLPSSLGCLI 280
                  + +               +  +  +  + +L  ++L        LP  L  L 
Sbjct: 460 FTYDNIAVDWEDANS----DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515

Query: 281 NLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKE 340
            L++L++               +    +   +   +L  +      +++  +     L+E
Sbjct: 516 ELQSLNIACN------------RGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEE 562

Query: 341 IRPNV-ISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
              +  +  + +L  L    N              L       +LT L++ 
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVR----------HLEAFGTNVKLTDLKLD 603

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 33/192 (17%), Positives = 55/192 (28%), Gaps = 56/192 (29%)

Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS--------------------------SL 276
               ++PD   + +TEL+VL                                       L
Sbjct: 334 GAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFL 392

Query: 277 GCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSS-------IEQLPREIGQLTCLKL 329
                L    L    +     +  +KK   +SLK +        I  + + I +LT L++
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQI 452

Query: 330 LDLSNCS------------------KLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSN 371
           +  +N                    K  E      SNL  L ++ + N         Q  
Sbjct: 453 IYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN----CPNMTQLP 508

Query: 372 ASLGELKQLSRL 383
             L +L +L  L
Sbjct: 509 DFLYDLPELQSL 520

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 21/154 (13%), Positives = 49/154 (31%), Gaps = 11/154 (7%)

Query: 216 SIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPF-FEGMTELRVLDLTGFRFHSLPS 274
           SIP   +           L   +    N    + D F    +  L  +D++   F S P+
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT 770

Query: 275 SLGCLINLRTLSLENCLVVDV--------AIIGDLKKLEILSLKHSSIEQLPREIGQLTC 326
                  L+   + +    +           I     L  L +  + I ++  ++     
Sbjct: 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQ 828

Query: 327 LKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360
           L +LD+++   +     +V   +     + + + 
Sbjct: 829 LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 80.3 bits (197), Expect = 1e-15
 Identities = 54/353 (15%), Positives = 108/353 (30%), Gaps = 108/353 (30%)

Query: 4   YEYSEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALK 63
              S D     L+ +E   L  K +    +    E             P  +  IA +++
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--------LTTNPRRLSIIAESIR 338

Query: 64  NKSPRI--WKD-AVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDG 120
           +       WK    ++L+                IE S   L+  E + +F    +    
Sbjct: 339 DGLATWDNWKHVNCDKLTTI--------------IESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 121 SRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRI-I 179
           + I        ++ L +  +    +     V  +++ L   SL+     E   K   I I
Sbjct: 385 AHIPTI-----LLSL-IWFDVIKSD-----VMVVVNKLHKYSLV-----EKQPKESTISI 428

Query: 180 HAIAVSIAAEKLLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLF 239
            +I +     +L   ++N   L   +  +D             Y +P+           F
Sbjct: 429 PSIYL-----ELKVKLENEYALHRSI--VDH------------YNIPKT----------F 459

Query: 240 FTENLSLQIPDPFF--------------EGMTELRVLDLTGFRF------HSLPSSLGCL 279
            +++L     D +F              E MT  R++ L  FRF      H   +     
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWNASG 518

Query: 280 INLRTLS---------LENCLVVDVAIIGDLKKL------EILSLKHSSIEQL 317
             L TL           +N    +  ++  +          ++  K++ + ++
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYE-RLVNAILDFLPKIEENLICSKYTDLLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 79.1 bits (194), Expect = 3e-15
 Identities = 90/592 (15%), Positives = 205/592 (34%), Gaps = 146/592 (24%)

Query: 5   EYSEDFLDWLLSNEEASHLFEKIVGHSAKKSD--FETI---GVEIVAKC--GGLPIAIKT 57
           +  +D    +LS EE  H+       +   +   F T+     E+V K     L I  K 
Sbjct: 36  KDVQDMPKSILSKEEIDHIIM--SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93

Query: 58  IANALK--NKSP----RIWKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLF 111
           + + +K   + P    R++ +  ++L N N    +    ++S ++  Y  L+    ++L 
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---NVSRLQP-YLKLR----QALL 145

Query: 112 QLCGLLKDGSRIAVDDLL---RYVMGLRLLTNADTLEAARNRVH-----------TLIDN 157
           +    L+    + +D +L   +  + L +  +         ++            T+++ 
Sbjct: 146 E----LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 158 LKSASLLFDGDSEDHAK-MHRIIHAIAVSIAAEKLLFNIQ----------NVADLKEELD 206
           L+      D +    +     I   I    A  + L   +          NV +  +  +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWN 260

Query: 207 KID-EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDL- 264
             +      ++  F+ +    + L           T ++SL   D     +T   V  L 
Sbjct: 261 AFNLSCKILLTTRFKQVT---DFLSAAT-------TTHISL---DHHSMTLTPDEVKSLL 307

Query: 265 ---TGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILS---LKHSSIEQLP 318
                 R   LP  +    N R LS+          I +  +  + +    KH + ++L 
Sbjct: 308 LKYLDCRPQDLPREV-LTTNPRRLSI----------IAESIRDGLATWDNWKHVNCDKLT 356

Query: 319 REIGQLTCLKLLDLSNCSKLKE----------IRPNVIS----NLTRLEELYMGNSFTQW 364
             I   + L +L+ +   K+ +          I   ++S    ++ + + + + N   ++
Sbjct: 357 TIIE--SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 365 K-VEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYE 423
             VE Q   S   +  +     L+V + +   + + +V    + + I           ++
Sbjct: 415 SLVEKQPKESTISIPSIYLE--LKVKLENEYALHRSIV----DHYNI--------PKTFD 460

Query: 424 TSKTLKLQLNN--STYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGF--ARLRHL 479
           +   +   L+    +++G+ +K +       H + +  F+ V   LD    F   ++RH 
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNI------EHPERMTLFRMVF--LDF--RFLEQKIRHD 510

Query: 480 HV-HNGPEIL------------HILNSDGRVGTFPLLESLFLHNLINLEKVC 518
               N    +            +I ++D     +  L +  L  L  +E+  
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDND---PKYERLVNAILDFLPKIEENL 559

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 8e-08
 Identities = 69/442 (15%), Positives = 129/442 (29%), Gaps = 122/442 (27%)

Query: 294 DVAIIGDLKKLEILS---LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
           D   + D+ K  ILS   + H  I      +     L+L      SK +E+    +  + 
Sbjct: 34  DCKDVQDMPK-SILSKEEIDH--IIMSKDAVSGT--LRLFWTL-LSKQEEMVQKFVEEV- 86

Query: 351 RLEELYMGNSF--TQWKVEGQSNASLGEL--KQLSRLTTLEVHIPDAQVMPQDLVFVELE 406
            L   Y    F  +  K E +  + +  +  +Q  RL        D QV  +  V     
Sbjct: 87  -LRINY---KFLMSPIKTEQRQPSMMTRMYIEQRDRLYN------DNQVFAKYNV----S 132

Query: 407 RFRICIGDVWSWSDGYETSKTLKLQLNNSTYLG-YGMK------MLLKRTEDLHLDELAG 459
           R +            Y   +   L+L  +  +   G+       + L       +     
Sbjct: 133 RLQP-----------YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 460 FK----NVVHELDDEEGFARLRHLHVHNGPE-----------ILHILNSDGRVGTFPLLE 504
           FK    N+ +    E     L+ L     P             L I +    +    L  
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKS 240

Query: 505 SLFLHNLINLEKVCDGKV--------------RLNEDDKSFSNLRIIKVEGCHR--VKHL 548
             + + L+ L  V + K               R     K  ++  +      H     H 
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR----FKQVTD-FLSAATTTHISLDHHS 295

Query: 549 FPFSLVKNLLQLQKV---KVTD-----CTN----LKLIVGKESENSAHKNGSISGVYFRK 596
              +  +    L K    +  D      T     L +I     +  A  +       ++ 
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD------NWKH 349

Query: 597 LHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLS 656
           ++  KL  + + +                   +   +P ++  +F+   VFP      + 
Sbjct: 350 VNCDKLTTIIESS-------------------LNVLEPAEYRKMFDRLSVFP--PSAHIP 388

Query: 657 SINVEKIWLNSFSAIESWVVQK 678
           +I +  IW +   +    VV K
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNK 410

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.8 bits (187), Expect = 2e-14
 Identities = 32/183 (17%), Positives = 66/183 (36%), Gaps = 12/183 (6%)

Query: 220 RGIYELPERLGFLKLK--LFLFFTENLSLQIPDPFFEGMTE--LRVLDLTGFRFHSL-PS 274
           + +  + + L    ++      F +     I    FEG+ E  +  ++L    F ++  +
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272

Query: 275 SLGCLINLRTLSLENCLVVDV-AIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDL 332
           +  C   L+ L L    + ++ + +  L  L+ L L  +  E L          L  L +
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332

Query: 333 SNCSKLKEIRPNVISNLTRLEELYMG-NSFTQWKVEGQSNASLGELKQLS----RLTTLE 387
              +K  E+    + NL  L EL +  +             +L  L+ L+       +L+
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392

Query: 388 VHI 390
              
Sbjct: 393 TEA 395

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 24/153 (15%), Positives = 43/153 (28%), Gaps = 35/153 (22%)

Query: 260 RVLDLTGFRFHSLP----------------------SSLGCLINLRTLSLENC--LVVDV 295
           +  +      + +P                      ++   LINL  L L  C    +  
Sbjct: 15  KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 296 AIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEE 354
                  +L+ L L  + +  +          LK L       +  I    + N   LE 
Sbjct: 75  DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLES 133

Query: 355 LYM-GNSFTQWKVEGQSNASLGELKQLSRLTTL 386
           LY+  N  +        +  L +     +L  L
Sbjct: 134 LYLGSNHIS--------SIKLPKGFPTEKLKVL 158

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 68/443 (15%), Positives = 128/443 (28%), Gaps = 74/443 (16%)

Query: 243 NLSL-QIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC--LVVDVAII 298
           NL L +IP            L+ +     ++  ++   LINL  L L  C    +     
Sbjct: 21  NLGLNEIPGTLP---NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF 77

Query: 299 GDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357
               +L+ L L  + +  +          LK L       +  I    + N   LE LY+
Sbjct: 78  QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYL 136

Query: 358 -GNSFTQWKVEGQSNASLGELKQLS----RLTTLEVHIPDAQVMPQDLVFVELERFRICI 412
             N  +   ++        +LK L      +  L      +    Q    + L      I
Sbjct: 137 GSNHIS--SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS---LQQATNLSLNLNGNDI 191

Query: 413 GDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEG 472
             +   +      ++L      +  + +     LK +    L     F+++  E      
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKG---LKNSTIQSLWLG-TFEDMDDEDISPAV 247

Query: 473 FARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFS 532
           F  L  + V    E +++            + S   H    L+++      L+E      
Sbjct: 248 FEGLCEMSV----ESINL--QKHYFFN---ISSNTFHCFSGLQELDLTATHLSELPSGLV 298

Query: 533 NLRIIKVEGCHRVKHLFPFSLVKNLLQ-LQKVKVTDCTNLK-LIVGKESENSAHKNGSIS 590
            L          +K L    L  N  + L ++  ++  +L  L +   ++      G + 
Sbjct: 299 GLS--------TLKKL---VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347

Query: 591 GVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSL 650
                 L  L L H   + +S                           +L         L
Sbjct: 348 N--LENLRELDLSH-DDIETSDCCNLQ-------------------LRNL-------SHL 378

Query: 651 KKLKLSSINVEKIWLNSFSAIES 673
           + L LS      +   +F     
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQ 401

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 72/478 (15%), Positives = 135/478 (28%), Gaps = 105/478 (21%)

Query: 237 FLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL--VV 293
           FL  T      I +  F+    L  L LT      +   +L     L+ L         +
Sbjct: 61  FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120

Query: 294 DVAIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLT-- 350
           D   + + K LE L L  + I  +   +      LK+LD  N   +  +    +S+L   
Sbjct: 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQA 179

Query: 351 -----------------------RLEELYM-GNSFTQWKVEGQSNASLGELKQLS----R 382
                                    + L   G        +G  N+++  L   +     
Sbjct: 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 383 LTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGM 442
              +   + +       +  + L++         +    +   + L L   + + L  G+
Sbjct: 240 DEDISPAVFEGLCEMS-VESINLQKHYF-FNISSNTFHCFSGLQELDLTATHLSELPSGL 297

Query: 443 KMLLKRTEDLHLDELAGFKNVVHELDDE--EGFARLRHLHVHNGPEILHILNSDGRVGTF 500
             L    + L L       N    L       F  L HL +    + L +    G +   
Sbjct: 298 VGL-STLKKLVLS-----ANKFENLCQISASNFPSLTHLSIKGNTKRLEL--GTGCLENL 349

Query: 501 PLLESLFL-HNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP--FSLVKNL 557
             L  L L H+ I     C+ +       ++ S+L+ + +        L    F     L
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQ------LRNLSHLQSLNLSYN-EPLSLKTEAFKECPQL 402

Query: 558 --LQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDL 615
             L L   ++                               L  L L H           
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQN-----------------LHLLKVLNLSH----------- 434

Query: 616 ETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIES 673
              +    S+  +        F  L       P+L+ L L   +  K  +   +++++
Sbjct: 435 ---SLLDISSEQL--------FDGL-------PALQHLNLQGNHFPKGNIQKTNSLQT 474

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 2e-14
 Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 10/166 (6%)

Query: 229 LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL--PSSLGCLINLRTLS 286
           L    L   L  T+N   +I    F  +  L VLDL                L N+  + 
Sbjct: 378 LAHSPLH-ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436

Query: 287 LENCLVVDV--AIIGDLKKLEILSLKH---SSIEQLPREIGQLTCLKLLDLSNCSKLKEI 341
           L     + +       +  L+ L L+     +++  P     L  L +LDLSN   +  I
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANI 495

Query: 342 RPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTL 386
             +++  L +LE L +  N+  +          +  LK LS L  L
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.1 bits (180), Expect = 1e-13
 Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 21/161 (13%)

Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL---PSSLGCLINLRTLSLENC--LV 292
           ++ + N  LQ+    F  +  L+ L L      ++   PS    L NL  L L N     
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 293 VDVAIIGDLKKLEILSLKHSSIEQLPRE---------IGQLTCLKLLDLSNCSKLKEIRP 343
           ++  ++  L+KLEIL L+H+++ +L +          +  L+ L +L+L +     EI  
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV 553

Query: 344 NVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
            V  +L  L+ + +  N+           +       L  L
Sbjct: 554 EVFKDLFELKIIDLGLNNLN-----TLPASVFNNQVSLKSL 589

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.9 bits (169), Expect = 3e-12
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 17/145 (11%)

Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLV--VDVAIIGDLKK 303
           Q+PD      T + VL+LT  +   L  ++      L +L +    +  ++  +   L  
Sbjct: 18  QVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM 74

Query: 304 LEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG-NSF 361
           L++L+L+H+ + QL  +     T L  L L +   +++I+ N       L  L +  N  
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGL 133

Query: 362 TQWKVEGQSNASLGELKQLSRLTTL 386
           +        +  LG   QL  L  L
Sbjct: 134 S--------STKLGTQVQLENLQEL 150

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 12/131 (9%)

Query: 257 TELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL--VVDVAIIGDLKKLEILSLKHSSI 314
               V D +  +   +P  L    N+  L+L +     +  A      +L  L +  ++I
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 315 EQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNA 372
            +L P    +L  LK+L+L +  +L ++     +  T L EL++  NS          N 
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQ-----KIKNN 115

Query: 373 SLGELKQLSRL 383
              + K L  L
Sbjct: 116 PFVKQKNLITL 126

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 5e-10
 Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 13/173 (7%)

Query: 219 FRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGC 278
             G++ +   L   +       +     +I D  F+ +  L  L++       + S++  
Sbjct: 292 LHGLFNV-RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350

Query: 279 -LINLRTLSLENCLVVDVAIIGD------LKKLEILSLKHSSIEQLPRE-IGQLTCLKLL 330
            LINL+ LSL N       +  +         L IL+L  + I ++  +    L  L++L
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 331 DLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRL 383
           DL      +E+       L  + E+Y+  +    K    +  S   +  L RL
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYN----KYLQLTRNSFALVPSLQRL 459

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 8e-10
 Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 17/153 (11%)

Query: 243 NLSLQIPDPF-FEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC-----LVVDV 295
            +     +       + L+ L+L+  +     P     +  L  L L N      L   +
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 296 AIIGDLKKLEILSLKHSSIEQLPREIG---QLTCLKLLDLSNCSKLKEIRPNVISNLTRL 352
            +      +  LSL +S +           + T L +LDLS    L  +  +  + L +L
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQL 274

Query: 353 EELYM-GNSFTQWKVEGQSNASLGELKQLSRLT 384
           E  ++  N+          + SL  L  +  L 
Sbjct: 275 EYFFLEYNNIQ-----HLFSHSLHGLFNVRYLN 302

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 26/168 (15%)

Query: 237 FLFFTENLSLQIPDPFFEGMTELRVLDLTG---------FRFHSL-PSSLGCLINLRTLS 286
           + F   N    +      G+  +R L+L                +   S   L  L  L+
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335

Query: 287 LENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPREIGQL-----TCLKLLDLSNCSKLK 339
           +E+  +  +   +   L  L+ LSL +S                 + L +L+L+   K+ 
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KIS 394

Query: 340 EIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTL 386
           +I  +  S L  LE L +  N   Q         +  E + L  +  +
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQ-------ELTGQEWRGLENIFEI 435

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 3e-09
 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 14/131 (10%)

Query: 245 SLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLEN----------CLVV 293
           ++      F+ +  L +LDL+     ++    L  L  L  L L++              
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 294 DVAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL 352
            +  +  L  L IL+L+ +  +++P E    L  LK++DL     L  +  +V +N   L
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSL 586

Query: 353 EELYM-GNSFT 362
           + L +  N  T
Sbjct: 587 KSLNLQKNLIT 597

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 15/158 (9%)

Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC----LV 292
           L    N   +I +  F     L  LDL+     S    +   L NL+ L L N     L 
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161

Query: 293 VDVAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVIS---N 348
            +   I     L+ L L  + I++  P     +  L  L L+N  +L       +     
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELA 220

Query: 349 LTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTL 386
            T +  L + NS    ++   SN +   LK  + LT L
Sbjct: 221 NTSIRNLSLSNS----QLSTTSNTTFLGLK-WTNLTML 253

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 9e-06
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 278 CLINLRTLSLENCLVVDVAIIGDL-KKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNC 335
           C ++       +  +    +  DL   + +L+L H+ + +LP     + + L  LD+   
Sbjct: 2   CTVSHEVADCSHLKL--TQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 336 SKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
             + ++ P +   L  L+ L +  N  +       S+ +      L+ L
Sbjct: 60  -TISKLEPELCQKLPMLKVLNLQHNELS-----QLSDKTFAFCTNLTEL 102

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 67/446 (15%), Positives = 129/446 (28%), Gaps = 80/446 (17%)

Query: 248 IPDPFFEGMTELRVLDLTGFRFHSLPS---SLGCLINLRTLSLENCL--VVDVAIIGDLK 302
                   +  L+ L L+  +  +L S    +    +L+ L L +             + 
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 303 KLEILSLKHSSI-EQLPREIG---QLTCLKLLDLSNCSKLKEIRPNVISNL--TRLEELY 356
           +L  L L +  +   L  ++      T ++ L LSN   L          L  T L  L 
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLD 254

Query: 357 M-GNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDV 415
           +  N+          N S   L QL        +I              L   R      
Sbjct: 255 LSYNNLN-----VVGNDSFAWLPQLEYFFLEYNNIQH----LFSHSLHGLFNVRY----- 300

Query: 416 WSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFAR 475
               +   +     + L +   +       LK  E L+++      N +  +     F  
Sbjct: 301 ---LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME-----DNDIPGIKSNM-FTG 351

Query: 476 LRHLHV----HNGPEILHILNSDGRVGTFPLLESLFL-HNLINLEKVCDGKVRLNEDD-K 529
           L +L      ++   +  + N          L  L L  N I+         ++  D   
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS---------KIESDAFS 402

Query: 530 SFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSI 589
              +L ++ +     +         + L  + ++ ++       +             S 
Sbjct: 403 WLGHLEVLDLGLNE-IGQELTGQEWRGLENIFEIYLSYN-KYLQLT----------RNSF 450

Query: 590 SGVYFRKLHFLKLQH--LPQLTSSGFDLETPTNTQ----GSNPGIIAEGDPKDFTSLFNE 643
           + V    L  L L+   L  + SS    +   N       +N   IA  +      L   
Sbjct: 451 ALV--PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN--IANINDDMLEGL--- 503

Query: 644 RVVFPSLKKLKLSSINVEKIWLNSFS 669
                 L+ L L   N+ ++W ++  
Sbjct: 504 ----EKLEILDLQHNNLARLWKHANP 525

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 7/138 (5%)

Query: 248 IPDPFFEGMTELRVLDLTGF-RFHSLPS-SLGCLINLRTLSLENCLVVDVAIIGDLKKLE 305
           IP   F  +  LR LDL    R   +   +   L NLR L+L  C + ++  +  L KL+
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLD 210

Query: 306 ILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQ 363
            L L  + +  +       L  L+ L +    +++ I  N   NL  L E+ +  N+ T 
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLT- 268

Query: 364 WKVEGQSNASLGELKQLS 381
             +       L  L+++ 
Sbjct: 269 -LLPHDLFTPLHHLERIH 285

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 21/160 (13%)

Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVV 293
           T  L+L       I    F+ +  L +L L+     ++   +   L NL TL L +  + 
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 294 DVA--IIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
            +       L KL+ L L+++ IE +P     ++  L+ LDL    +L  I       L+
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185

Query: 351 RLEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
            L  L +   +             +  L  L +L  L++ 
Sbjct: 186 NLRYLNLAMCNLR----------EIPNLTPLIKLDELDLS 215

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.8 bits (184), Expect = 3e-14
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 7/138 (5%)

Query: 248 IPDPFFEGMTELRVLDLTGF-RFHSLPS-SLGCLINLRTLSLENCLVVDVAIIGDLKKLE 305
           IP   F  +  L  LDL    +   +   +   L NL+ L+L  C + D+  +  L  LE
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLE 221

Query: 306 ILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQ 363
            L +  +   ++       L+ LK L + N  ++  I  N    L  L EL +  N+ + 
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLS- 279

Query: 364 WKVEGQSNASLGELKQLS 381
             +       L  L +L 
Sbjct: 280 -SLPHDLFTPLRYLVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 38/160 (23%), Positives = 57/160 (35%), Gaps = 21/160 (13%)

Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL-- 291
           T  L+L       I    F  +  L VL L       +   +   L +L TL L +    
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136

Query: 292 VVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
           V+       L KL  L L+++ IE +P     ++  L  LDL    KL+ I       L 
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196

Query: 351 RLEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
            L+ L +   +             +  L  L  L  LE+ 
Sbjct: 197 NLKYLNLGMCNIK----------DMPNLTPLVGLEELEMS 226

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 29/152 (19%), Positives = 59/152 (38%), Gaps = 11/152 (7%)

Query: 245 SLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL---VVDVAIIGDL 301
                     G T L+ LDL+     ++ S+   L  L  L  ++     + + ++   L
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 302 KKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GN 359
           + L  L + H+        I   L+ L++L ++  S  +   P++ + L  L  L +   
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 360 SFTQWKVEGQSNASLGELKQLS----RLTTLE 387
              Q  +   +  SL  L+ L+       +L+
Sbjct: 186 QLEQ--LSPTAFNSLSSLQVLNMSHNNFFSLD 215

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 15/159 (9%)

Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGC---LINLRTLSL-ENCLVV 293
           L    N    +P   F+ +T+L  L L+                  +L+ L L  N ++ 
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92

Query: 294 DVAIIGDLKKLEILSLKHSSIEQLPRE--IGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351
             +    L++LE L  +HS+++Q+        L  L  LD+S+    +     + + L+ 
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSS 151

Query: 352 LEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
           LE L M GNSF       Q N       +L  LT L++ 
Sbjct: 152 LEVLKMAGNSF-------QENFLPDIFTELRNLTFLDLS 183

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 11/146 (7%)

Query: 222 IYELPERLGFLKLK--LFLFFTENLSLQIPDP-FFEGMTELRVLDLTGFRFHSLPS-SLG 277
           +  +     FL L+    L F  +   Q+ +   F  +  L  LD++        +    
Sbjct: 90  VITMSS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 278 CLINLRTLSLENCLVVDV---AIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLS 333
            L +L  L +      +     I  +L+ L  L L    +EQL       L+ L++L++S
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207

Query: 334 NCSKLKEIRPNVISNLTRLEELYMGN 359
           +      +       L  L+ L    
Sbjct: 208 HN-NFFSLDTFPYKCLNSLQVLDYSL 232

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENCLVVDVAIIGD----L 301
            +P       +    L+L   +  SLP      L  L  LSL +  +             
Sbjct: 21  SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 302 KKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGN 359
             L+ L L  + +  +      L  L+ LD  +   LK++   +V  +L  L  L + +
Sbjct: 78  TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISH 135

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 237 FLFFTENLSLQ-IPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENC--LV 292
            L    N   +      F  +  L  LDL+  +   L   +   L +L+ L++ +     
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213

Query: 293 VDVAIIGDLKKLEILSLKHSSIEQLPREI--GQLTCLKLLDLSN 334
           +D      L  L++L    + I    ++      + L  L+L+ 
Sbjct: 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.9 bits (178), Expect = 1e-13
 Identities = 33/233 (14%), Positives = 79/233 (33%), Gaps = 11/233 (4%)

Query: 127 DLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSI 186
              R       L   +        + + +++ K    L   +      +  ++ A+   +
Sbjct: 340 CWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 399

Query: 187 AAEKLLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSL 246
             ++ L     +    + +D    A     +  + + E             L        
Sbjct: 400 YEKETLQYFSTL----KAVD-PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT 454

Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEI 306
            +     E +  +  LDL+  R  +LP +L  L  L  L   +  + +V  + +L +L+ 
Sbjct: 455 VLC--HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQE 512

Query: 307 LSLKHSSIEQLP--REIGQLTCLKLLDLSN--CSKLKEIRPNVISNLTRLEEL 355
           L L ++ ++Q    + +     L LL+L      + + I+  +   L  +  +
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 31/198 (15%), Positives = 67/198 (33%), Gaps = 28/198 (14%)

Query: 190 KLLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIP 249
           +     + +   +  ++K     + +    + + EL     +  L + L       L   
Sbjct: 343 RDSATDEQLFRCELSVEKSTVLQSELE-SCKELQELEPENKWCLLTIILLMRALDPLLYE 401

Query: 250 DPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309
               +  + L+ +D     +     S               L+ +  +  +   + +L L
Sbjct: 402 KETLQYFSTLKAVDPMRAAYLDDLRS-------------KFLLENSVLKMEYADVRVLHL 448

Query: 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEG 368
            H  +  L   + QL  +  LDLS+  +L+ + P  ++ L  LE L    N+        
Sbjct: 449 AHKDLTVLC-HLEQLLLVTHLDLSHN-RLRAL-PPALAALRCLEVLQASDNALE------ 499

Query: 369 QSNASLGELKQLSRLTTL 386
               ++  +  L RL  L
Sbjct: 500 ----NVDGVANLPRLQEL 513

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 54/294 (18%), Positives = 98/294 (33%), Gaps = 26/294 (8%)

Query: 241 TENLSL------QIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCL-- 291
            ++L L       I          L+VL L   R +++   +   L +L  L L +    
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 292 VVDVAIIGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349
            +  +  G L  L+ L+L  +  + L        LT L+ L + N     EIR    + L
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 350 TRLEELYM-GNSFTQWKVEGQSNASLGELKQLS-RLTTLEVHIPDAQVMPQDLVFVELER 407
           T L EL +   S      + QS  S+ ++  L+  L+     +     +   + ++EL  
Sbjct: 148 TSLNELEIKALSLR--NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 408 FRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLK-----------RTEDLHLDE 456
             +             +S   KL    S         LLK             +D  L+ 
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 457 LAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHN 510
           L  F     ++  E G      +   + P+     +          ++ + + N
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.3 bits (149), Expect = 6e-10
 Identities = 20/145 (13%), Positives = 50/145 (34%), Gaps = 13/145 (8%)

Query: 228 RLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLG-CLINLRTLS 286
           ++  + ++  L   +          +  + +++ + +   +   +P S    L +L  L 
Sbjct: 282 KVETVTIR-RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD 340

Query: 287 LENCLVVDVAI-----IGDLKKLEILSLKHSSIEQLPREIGQLTC---LKLLDLSNCSKL 338
           L   L+V+  +      G    L+ L L  + +  + +    L     L  LD+S     
Sbjct: 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TF 399

Query: 339 KEIRPNVISNLTRLEELYM-GNSFT 362
             + P+      ++  L +      
Sbjct: 400 HPM-PDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 23/157 (14%)

Query: 226 PERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS----LGCLIN 281
            + L  ++    L    + S  + + F + ++ +R L+L          S          
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 282 LRTLSLENCLVVDVAI---------IGDLKKLEILSLKHSSIEQLP-------REIGQLT 325
           ++ L+    ++ D +          I +L ++E      + +            E+G++ 
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 326 CLKL--LDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360
            + +  L +     L      V S L +++ + + NS
Sbjct: 285 TVTIRRLHIPQF-YLFYDLSTVYSLLEKVKRITVENS 320

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 7/114 (6%)

Query: 222 IYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLIN 281
            + +P+   + +   FL  +      I          L VLD++     S    L     
Sbjct: 399 FHPMPDSCQWPEKMRFLNLSST---GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLP---R 452

Query: 282 LRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSN 334
           L+ L +    +  +        L ++ +  + ++ +P  I  +LT L+ + L  
Sbjct: 453 LQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 14/143 (9%)

Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEI 306
              +     M  L  + L       L + +    N++ L++ N    +   I  L  LE 
Sbjct: 34  STANITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNPISGLSNLER 92

Query: 307 LSLKHSSI-EQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK 365
           L +    +       +  LT L LLD+S+     +     I+ L ++  + +        
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDL-------- 143

Query: 366 VEGQSNASLGELKQLSRLTTLEV 388
                N ++ ++  L  L  L+ 
Sbjct: 144 ---SYNGAITDIMPLKTLPELKS 163

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 31/178 (17%), Positives = 66/178 (37%), Gaps = 16/178 (8%)

Query: 187 AAEKLLFNIQNVADL-KEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLS 245
           A    L    + A++ + +++ +    T I++    + +L        +K  L       
Sbjct: 24  AYLNGLLGQSSTANITEAQMNSL----TYITLANINVTDLTGIEYAHNIK-DLTINNI-- 76

Query: 246 LQIPD-PFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVDVAI--IGDL 301
               +     G++ L  L + G    S    +L  L +L  L + +    D  +  I  L
Sbjct: 77  -HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 302 KKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
            K+  + L ++        +  L  LK L++     + + R   I +  +L +LY  +
Sbjct: 136 PKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
                + ++  +DL+     +    L  L  L++L+++   V D   I D  KL  L   
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAF 189

Query: 311 H---SSIE 315
                  +
Sbjct: 190 SQTIGGKK 197

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.8 bits (174), Expect = 6e-13
 Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 10/153 (6%)

Query: 236 LFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL---V 292
           L L                G T L+ LDL+     ++ S+   L  L  L  ++     +
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 293 VDVAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351
            + ++   L+ L  L + H+            L+ L++L ++  S  +   P++ + L  
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 352 LEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
           L  L +             S  +   L  L  L
Sbjct: 472 LTFLDLSQCQLE-----QLSPTAFNSLSSLQVL 499

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 2e-11
 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 14/154 (9%)

Query: 237 FLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL--PSSLGCLINLRTLSLENCL--V 292
           +L  + N  + +   F  G+ +L  LD        +   S    L NL  L + +    V
Sbjct: 377 YLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 293 VDVAIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
               I   L  LE+L +  +S ++  LP    +L  L  LDLS C +L+++ P   ++L+
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLS 494

Query: 351 RLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
            L+ L M  N+F               L  L  L
Sbjct: 495 SLQVLNMSHNNFF-----SLDTFPYKCLNSLQVL 523

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 8/148 (5%)

Query: 222 IYELPERLGFLKLKLFLFFTEN-LSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCL 279
           +  +      L+    L F  + L        F  +  L  LD++              L
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 280 INLRTLSL-ENCLVVDV--AIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNC 335
            +L  L +  N    +    I  +L+ L  L L    +EQL P     L+ L++L++S+ 
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504

Query: 336 SKLKEIRPNVISNLTRLEELYM-GNSFT 362
                +       L  L+ L    N   
Sbjct: 505 -NFFSLDTFPYKCLNSLQVLDYSLNHIM 531

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.7 bits (158), Expect = 5e-11
 Identities = 41/169 (24%), Positives = 64/169 (37%), Gaps = 12/169 (7%)

Query: 220 RGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGC 278
              Y++P+ L     K  L  + N    +    F    EL+VLDL+     ++   +   
Sbjct: 17  LNFYKIPDNL-PFSTK-NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74

Query: 279 LINLRTLSLENC--LVVDVAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNC 335
           L +L TL L       + +     L  L+ L    +++  L    IG L  LK L++++ 
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 336 SKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
                  P   SNLT LE L +  N              L  L Q+  L
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQ-----SIYCTDLRVLHQMPLL 178

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 25/160 (15%), Positives = 41/160 (25%), Gaps = 14/160 (8%)

Query: 229 LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLE 288
             +      L        Q P    + +  L      G        S   L +L  L L 
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG----GNAFSEVDLPSLEFLDLS 355

Query: 289 NCLVVDVAII----GDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPN 344
              +               L+ L L  + +  +      L  L+ LD  + +  +    +
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 345 VISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
           V  +L  L  L +              N     L  L  L
Sbjct: 416 VFLSLRNLIYLDISHTHTR-----VAFNGIFNGLSSLEVL 450

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.5 bits (171), Expect = 7e-13
 Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 14/137 (10%)

Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
                MT L  L +   +   L   L  L  L  L +    + D+  + DL KL++L++ 
Sbjct: 215 TPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVG 273

Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQ 369
            + I  +   +  L+ L  L L+N  +L      VI  LT L  L++  N  T       
Sbjct: 274 SNQISDIS-VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHIT------- 324

Query: 370 SNASLGELKQLSRLTTL 386
               +  L  LS++ + 
Sbjct: 325 ---DIRPLASLSKMDSA 338

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.5 bits (171), Expect = 7e-13
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 15/140 (10%)

Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
                + +L  L +   +   + + L  L NLR L L    + D++ + +L K+  L+L 
Sbjct: 82  SPLSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLG 140

Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG-NSFTQWKVEGQ 369
            +        +  +T L  L ++   K+K++ P  I+NLT L  L +  N          
Sbjct: 141 ANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIE------- 190

Query: 370 SNASLGELKQLSRLTTLEVH 389
               +  L  L+ L     +
Sbjct: 191 ---DISPLASLTSLHYFTAY 207

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.1 bits (170), Expect = 1e-12
 Identities = 27/137 (19%), Positives = 60/137 (43%), Gaps = 14/137 (10%)

Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
                +T L        +   +   +  +  L +L + N  + D++ + +L +L  L + 
Sbjct: 193 SPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIG 251

Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQ 369
            + I  +   +  LT LK+L++ +  ++ +I    ++NL++L  L++  N          
Sbjct: 252 TNQISDIN-AVKDLTKLKMLNVGSN-QISDISV--LNNLSQLNSLFLNNNQLG------- 300

Query: 370 SNASLGELKQLSRLTTL 386
            N  +  +  L+ LTTL
Sbjct: 301 -NEDMEVIGGLTNLTTL 316

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.0 bits (162), Expect = 9e-12
 Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 17/153 (11%)

Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAI 297
           L    N +L    P    MT L  L +T  +   +   +  L +L +LSL    + D++ 
Sbjct: 137 LNLGANHNLSDLSPL-SNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP 194

Query: 298 IGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357
           +  L  L   +   + I  +   +  +T L  L + N  K+ ++ P  ++NL++L  L +
Sbjct: 195 LASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNN-KITDLSP--LANLSQLTWLEI 250

Query: 358 -GNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
             N  +           +  +K L++L  L V 
Sbjct: 251 GTNQIS----------DINAVKDLTKLKMLNVG 273

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.5 bits (158), Expect = 3e-11
 Identities = 23/110 (20%), Positives = 55/110 (50%), Gaps = 5/110 (4%)

Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
                +++L  L++   +   + + +  L  L+ L++ +  + D++++ +L +L  L L 
Sbjct: 237 SPLANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLN 295

Query: 311 HSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
           ++ +       IG LT L  L LS    + +IRP  +++L++++     N
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP--LASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.3 bits (142), Expect = 3e-09
 Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 16/132 (12%)

Query: 259 LRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLP 318
              L       + +      L       L+   V DV    +L+ +  L +    +  + 
Sbjct: 2   AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ 60

Query: 319 REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGEL 377
             I  LT L+ L+L+   ++ +I P  +SNL +L  LY+  N  T           +  L
Sbjct: 61  -GIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKIT----------DISAL 106

Query: 378 KQLSRLTTLEVH 389
           + L+ L  L ++
Sbjct: 107 QNLTNLRELYLN 118

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 251 PFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309
                +++L  L L   +  +     +G L NL TL L    + D+  +  L K++    
Sbjct: 281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADF 340

Query: 310 KHSSIEQ 316
            +  I++
Sbjct: 341 ANQVIKK 347

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 28/180 (15%), Positives = 63/180 (35%), Gaps = 15/180 (8%)

Query: 220 RGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGC 278
           + +Y   E +     K+ + F  +   ++P    +   ++ +L+L   +   + + +   
Sbjct: 33  QDVYFGFEDITLNNQKI-VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY 91

Query: 279 LINLRTLSLENCL--VVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNC 335
              ++ L +       +   +  ++  L +L L+ + +  LPR I      L  L +SN 
Sbjct: 92  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151

Query: 336 SKLKEIRPNVISNLTRLEELYMGN---------SFTQWKVEGQSNASLGELKQLSRLTTL 386
             L+ I  +     T L+ L + +                   S   L  L     +  L
Sbjct: 152 -NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEEL 210

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 3/104 (2%)

Query: 251 PFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLE-NCLVVDVAIIGDLKKLEILS 308
            +      L  +DL+      +       +  L  L +  N LV        +  L++L 
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 301

Query: 309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL 352
           L H+ +  + R   Q   L+ L L +   +  ++ +    L  L
Sbjct: 302 LSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTHHTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 39/166 (23%), Positives = 65/166 (39%), Gaps = 24/166 (14%)

Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLP-----------------SSLGCLINLRTLSLEN 289
           +I D  F+  T L+ L L+  R   +                  S+L   I +  L   +
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 214

Query: 290 CLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349
             +  V       +L IL L+H+++      +     L  +DLS   +L++I  +    +
Sbjct: 215 NSINVVR-GPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN-ELEKIMYHPFVKM 271

Query: 350 TRLEELYM-GNSFTQWKVEGQSNASLGELKQLS--RLTTLEVHIPD 392
            RLE LY+  N      + GQ   +L  L  LS   L  +E + P 
Sbjct: 272 QRLERLYISNNRLVALNLYGQPIPTLKVL-DLSHNHLLHVERNQPQ 316

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 23/131 (17%), Positives = 55/131 (41%), Gaps = 11/131 (8%)

Query: 268 RFHSLPSSLGCLINLRTLSLEN--CLVVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQL 324
            +  + S+L        + ++     V        L   +I++ K+S++ +LP  +    
Sbjct: 9   EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 68

Query: 325 TCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLS-- 381
             ++LL+L++  +++EI     +    +++LYM  N+     +      ++  L  L   
Sbjct: 69  RQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRY--LPPHVFQNVPLLTVLVLE 125

Query: 382 --RLTTLEVHI 390
              L++L   I
Sbjct: 126 RNDLSSLPRGI 136

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 6/127 (4%)

Query: 238 LFFTENLSLQ-IPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVDV 295
           L  ++N  L+ +    F G+  L  L L       L       L  L+ L L++  +  +
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 296 A--IIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRL 352
                 DL  L  L L  + I  +P      L  L  L L    ++  + P+   +L RL
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRL 203

Query: 353 EELYMGN 359
             LY+  
Sbjct: 204 MTLYLFA 210

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 19/163 (11%)

Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLE-NCL- 291
           ++ + L       +P   F     L +L L       + + +   L  L  L L  N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 292 -VVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNL 349
             VD A    L +L  L L    +++L   +   L  L+ L L +   L+ +  +   +L
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDL 152

Query: 350 TRLEELYM-GNSFTQWKVEGQSNASLGELKQLS----RLTTLE 387
             L  L++ GN  +   V  ++   L  L +L     R+  + 
Sbjct: 153 GNLTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHVH 193

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 13/160 (8%)

Query: 237 FLFFTENLSLQIPDPFFEGMTELRVLDLTG-FRFHSLPSS-LGCLINLRTLSLENCLV-- 292
            L+   N+  +I    F G+  L  LDL+   +  S+  +    L  L TL L+ C +  
Sbjct: 60  ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119

Query: 293 VDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351
           +   +   L  L+ L L+ ++++ LP +    L  L  L L   +++  +       L  
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHS 178

Query: 352 LEELYM-GNSFTQWKVEGQSNASLGELKQLS----RLTTL 386
           L+ L +  N      V   +   LG L  L      L+ L
Sbjct: 179 LDRLLLHQNRVAH--VHPHAFRDLGRLMTLYLFANNLSAL 216

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 12/133 (9%)

Query: 262 LDLTGFRFHSLPSSLGCLINLRTLSLENCL--VVDVAIIGDLKKLEILSLKHSSIEQLPR 319
                    ++P  +      + + L       V  A     + L IL L  + + ++  
Sbjct: 16  TSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 320 EI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGEL 377
                L  L+ LDLS+ ++L+ + P     L RL  L++        ++       L  L
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ--ELGPGLFRGLAAL 131

Query: 378 KQLS----RLTTL 386
           + L      L  L
Sbjct: 132 QYLYLQDNALQAL 144

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 1e-12
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 16/140 (11%)

Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
               G+T+L  L L   +  ++   L  L  L  L L    + D++ I +LK L  L+L 
Sbjct: 259 APLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 317

Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQ 369
            ++I  +   +  LT L+ L   N  K+ ++    ++NLT +  L    N  +       
Sbjct: 318 FNNISDIS-PVSSLTKLQRLFFYNN-KVSDVSS--LANLTNINWLSAGHNQIS------- 366

Query: 370 SNASLGELKQLSRLTTLEVH 389
               L  L  L+R+T L ++
Sbjct: 367 ---DLTPLANLTRITQLGLN 383

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 1e-12
 Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
                +T L  L  T  +   +   LG L NL  LSL    + D+  +  L  L  L L 
Sbjct: 193 SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 251

Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQ 369
           ++ I  L   +  LT L  L L    ++  I P  ++ LT L  L +  N          
Sbjct: 252 NNQISNLA-PLSGLTKLTELKLGAN-QISNISP--LAGLTALTNLELNENQLEDIS---- 303

Query: 370 SNASLGELKQLSRL 383
               +  LK L+ L
Sbjct: 304 ---PISNLKNLTYL 314

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 2e-12
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 16/140 (11%)

Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
                + ++  L        S+   +  L NL  ++  N  + D+  + +L KL  + + 
Sbjct: 40  VSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMN 98

Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQ 369
           ++ I  +   +  LT L  L L N  ++ +I P  + NLT L  L +  N+ +       
Sbjct: 99  NNQIADIT-PLANLTNLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSNTIS------- 147

Query: 370 SNASLGELKQLSRLTTLEVH 389
               +  L  L+ L  L   
Sbjct: 148 ---DISALSGLTSLQQLSFG 164

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.1 bits (162), Expect = 2e-11
 Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 6/125 (4%)

Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
               G+T L  L+L   +   +   +  L NL  L+L    + D++ +  L KL+ L   
Sbjct: 281 SPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY 339

Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQ 369
           ++ +  +   +  LT +  L   +  ++ ++ P  ++NLTR+ +L +   ++T   V  +
Sbjct: 340 NNKVSDVS-SLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQAWTNAPVNYK 395

Query: 370 SNASL 374
           +N S+
Sbjct: 396 ANVSI 400

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 17/139 (12%)

Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
               G+T L+ L        +    L  L  L  L + +  V D++++  L  LE L   
Sbjct: 150 SALSGLTSLQQLSFG--NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 207

Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQ 369
           ++ I  +   +G LT L  L L+   +LK+I    +++LT L +L +  N  +       
Sbjct: 208 NNQISDIT-PLGILTNLDELSLNGN-QLKDIGT--LASLTNLTDLDLANNQIS------- 256

Query: 370 SNASLGELKQLSRLTTLEV 388
              +L  L  L++LT L++
Sbjct: 257 ---NLAPLSGLTKLTELKL 272

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.8 bits (156), Expect = 9e-11
 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 17/140 (12%)

Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
                +T L  L L   +   +   L  L NL  L L +  + D++ +  L  L+ LS  
Sbjct: 106 TPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 164

Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG-NSFTQWKVEGQ 369
           +   +  P  +  LT L+ LD+S+  K+ +I  +V++ LT LE L    N  +       
Sbjct: 165 NQVTDLKP--LANLTTLERLDISSN-KVSDI--SVLAKLTNLESLIATNNQIS------- 212

Query: 370 SNASLGELKQLSRLTTLEVH 389
               +  L  L+ L  L ++
Sbjct: 213 ---DITPLGILTNLDELSLN 229

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 17/144 (11%)

Query: 247 QIPDPF-FEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLE 305
            I   F    + E     L         S    L  + TL  +   +  +  +  L  L 
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDGVEYLNNLT 71

Query: 306 ILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQW 364
            ++  ++ +  +   +  LT L  + ++N  ++ +I P  ++NLT L  L +  N  T  
Sbjct: 72  QINFSNNQLTDIT-PLKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQIT-- 125

Query: 365 KVEGQSNASLGELKQLSRLTTLEV 388
                    +  LK L+ L  LE+
Sbjct: 126 --------DIDPLKNLTNLNRLEL 141

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 7e-08
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 3/106 (2%)

Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
                +T+L+ L     +   + S L  L N+  LS  +  + D+  + +L ++  L L 
Sbjct: 325 SPVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 383

Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELY 356
             +    P        + + +         I P  IS+     E  
Sbjct: 384 DQAWTNAPVNYKAN--VSIPNTVKNVTGALIAPATISDGGSYTEPD 427

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.7 bits (171), Expect = 2e-12
 Identities = 31/170 (18%), Positives = 53/170 (31%), Gaps = 13/170 (7%)

Query: 221 GIYELPERLGFLKLKLFLFFTEN-LSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGC 278
           G   +      L+    L F  + L        F  + +L  LD++              
Sbjct: 387 GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446

Query: 279 LINLRTLSLENCLVVDV---AIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSN 334
           L +L TL +      D     +  +   L  L L    +EQ+   +   L  L+LL++S+
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

Query: 335 CSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
              L  +  +  + L  L  L    N                  K L+  
Sbjct: 507 N-NLLFLDSSHYNQLYSLSTLDCSFNRIE-----TSKGILQHFPKSLAFF 550

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.1 bits (167), Expect = 4e-12
 Identities = 38/151 (25%), Positives = 53/151 (35%), Gaps = 16/151 (10%)

Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLP--SSLGCLINLRTLSLENCL--VVDVAII 298
                I    F G+ EL+ LD        +   S+   L  L  L +      +    I 
Sbjct: 385 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444

Query: 299 GDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELY 356
             L  L  L +  +S +   L       T L  LDLS C +L++I   V   L RL+ L 
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLN 503

Query: 357 M-GNSFTQWKVEGQSNASLGELKQLSRLTTL 386
           M  N+                  QL  L+TL
Sbjct: 504 MSHNNLLFL--------DSSHYNQLYSLSTL 526

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.1 bits (159), Expect = 4e-11
 Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 9/146 (6%)

Query: 243 NLSLQIPDPF-FEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL-ENCL--VVDVAII 298
            LS      +   G   LR LDL+      + ++   L  L+ L    + L  V + +  
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 299 GDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357
             L+KL  L + +++ +     I   LT L  L ++  S       NV +N T L  L +
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 358 GNSFTQWKVEGQSNASLGELKQLSRL 383
                  ++E  S      L +L  L
Sbjct: 481 SKC----QLEQISWGVFDTLHRLQLL 502

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.9 bits (156), Expect = 1e-10
 Identities = 69/433 (15%), Positives = 123/433 (28%), Gaps = 89/433 (20%)

Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENC--LVVDVAIIG 299
            LS ++PD      +  + +DL+      L   S      L+ L L  C    ++     
Sbjct: 22  KLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH 77

Query: 300 DLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM- 357
            L  L  L L  + I+         LT L+ L       L  +    I  L  L++L + 
Sbjct: 78  GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVA 136

Query: 358 GNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWS 417
            N         +  A    L  L  +               DL +  ++   I + D+  
Sbjct: 137 HNFIH----SCKLPAYFSNLTNLVHV---------------DLSYNYIQT--ITVNDLQF 175

Query: 418 WSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLR 477
             +  + + +L + LN   ++       +K   +L L       N       +     L 
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRG-----NFNSSNIMKTCLQNLA 229

Query: 478 HLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRII 537
            LHVH            G       LE      +  L         +  D+   +     
Sbjct: 230 GLHVHR--------LILGEFKDERNLEIFEPSIMEGLC-------DVTIDEFRLTYTNDF 274

Query: 538 KVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKL-IVGKESENSAHKNGSISGVYFRK 596
                     +  F  + N+  +          + +  +    ++   ++ SI     ++
Sbjct: 275 SD-------DIVKFHCLANVSAM------SLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ 321

Query: 597 LHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLS 656
              L L  L  LT +                           +L       PSL  L LS
Sbjct: 322 FPTLDLPFLKSLTLTMNKGSISFK----------------KVAL-------PSLSYLDLS 358

Query: 657 SINVEKIWLNSFS 669
              +      S+S
Sbjct: 359 RNALSFSGCCSYS 371

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 237 FLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL--VV 293
           +L  +      I D  + G+  L  L LTG    S  P S   L +L  L         +
Sbjct: 60  WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119

Query: 294 DVAIIGDLKKLEILSLKHSSIE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351
           +   IG L  L+ L++ H+ I   +LP     LT L  +DLS    ++ I  N +  L  
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRE 178

Query: 352 LEELYM 357
             ++ +
Sbjct: 179 NPQVNL 184

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 10/157 (6%)

Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS--LPSSLGCLINLRTLSLENCL--VV 293
           L   E     +       +  L+ L++     HS  LP+    L NL  + L       +
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168

Query: 294 DVAIIGDLKKL----EILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349
            V  +  L++       L +  + I+ +  +  Q   L  L L        I    + NL
Sbjct: 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228

Query: 350 TRLEE--LYMGNSFTQWKVEGQSNASLGELKQLSRLT 384
             L    L +G    +  +E    + +  L  ++   
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 9/158 (5%)

Query: 228 RLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR---FHSLPSSLGCLINLRT 284
            L   +L L  F  E           EG+ ++ + +        F        CL N+  
Sbjct: 230 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289

Query: 285 LSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPN 344
           +SL    +  +  +    K + LS+    ++Q P     L  LK L L+   K       
Sbjct: 290 MSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP--TLDLPFLKSLTLTMN-KGSISFKK 346

Query: 345 VISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLS 381
               L  L  L +  N+ +       S+     L+ L 
Sbjct: 347 --VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.2 bits (167), Expect = 4e-12
 Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 12/150 (8%)

Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLE--NCLVVDVAIIGDLKK 303
            IP      +  L VL L     +++   S   L  L+ L +     L            
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 304 LEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSF 361
           L  LS+ H ++  +P   +  L  L+ L+LS  + +  I  +++  L RL+E+ + G   
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGGQL 284

Query: 362 TQWKVEGQSNASLGELKQLS----RLTTLE 387
               VE  +   L  L+ L+    +LTTLE
Sbjct: 285 A--VVEPYAFRGLNYLRVLNVSGNQLTTLE 312

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 18/162 (11%)

Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL-- 291
           T  L L       +    F     L  L+L      ++   +   L NLRTL L +    
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 292 VVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
           ++ + +   L  L  L +  + I  L   +   L  LK L++ +   L  I     S L 
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLN 152

Query: 351 RLEELYM-GNSFTQWKVEGQSNASLGELKQLS----RLTTLE 387
            LE+L +   + T   +  ++ + L  L  L      +  + 
Sbjct: 153 SLEQLTLEKCNLT--SIPTEALSHLHGLIVLRLRHLNINAIR 192

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.0 bits (156), Expect = 7e-11
 Identities = 35/155 (22%), Positives = 54/155 (34%), Gaps = 14/155 (9%)

Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL--VVD 294
           L   EN+   +    F  +  LR L L   R   +P      L NL  L +      ++ 
Sbjct: 61  LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120

Query: 295 VAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE 353
             +  DL  L+ L +  + +  +       L  L+ L L  C  L  I    +S+L  L 
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLI 179

Query: 354 ELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTLE 387
            L +   +                 K+L RL  LE
Sbjct: 180 VLRLRHLNIN--------AIRDYSFKRLYRLKVLE 206

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 7/146 (4%)

Query: 222 IYELPER-LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCL 279
           I  + +     L     L  +    L    P       L  L +T     ++P  ++  L
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247

Query: 280 INLRTLSLENCLVVDVA--IIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCS 336
           + LR L+L    +  +   ++ +L +L+ + L    +  +       L  L++L++S   
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN- 306

Query: 337 KLKEIRPNVISNLTRLEELYM-GNSF 361
           +L  +  +V  ++  LE L +  N  
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPL 332

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.0 bits (166), Expect = 5e-12
 Identities = 28/180 (15%), Positives = 63/180 (35%), Gaps = 15/180 (8%)

Query: 220 RGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGC 278
           + +Y   E +     K+ + F  +   ++P    +   ++ +L+L   +   + + +   
Sbjct: 39  QDVYFGFEDITLNNQKI-VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY 97

Query: 279 LINLRTLSLENCL--VVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNC 335
              ++ L +       +   +  ++  L +L L+ + +  LPR I      L  L +SN 
Sbjct: 98  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157

Query: 336 SKLKEIRPNVISNLTRLEELYMGN---------SFTQWKVEGQSNASLGELKQLSRLTTL 386
             L+ I  +     T L+ L + +                   S   L  L     +  L
Sbjct: 158 -NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEEL 216

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.1 bits (148), Expect = 7e-10
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 3/104 (2%)

Query: 251 PFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLE-NCLVVDVAIIGDLKKLEILS 308
            +      L  +DL+      +       +  L  L +  N LV        +  L++L 
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 307

Query: 309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL 352
           L H+ +  + R   Q   L+ L L +   +  ++ +    L  L
Sbjct: 308 LSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTHHTLKNL 350

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.8 bits (142), Expect = 4e-09
 Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 24/165 (14%)

Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLP-----------------SSLGCLINLRTLSLEN 289
           +I D  F+  T L+ L L+  R   +                  S+L   I +  L   +
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 220

Query: 290 CLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349
             +  V       +L IL L+H+++      +     L  +DLS   +L++I  +    +
Sbjct: 221 NSINVVR-GPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN-ELEKIMYHPFVKM 277

Query: 350 TRLEELYM-GNSFTQWKVEGQSNASLGELKQLS--RLTTLEVHIP 391
            RLE LY+  N      + GQ   +L  L  LS   L  +E + P
Sbjct: 278 QRLERLYISNNRLVALNLYGQPIPTLKVL-DLSHNHLLHVERNQP 321

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 20/97 (20%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 300 DLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM- 357
            L   +I++ K+S++ +LP  +      ++LL+L++  +++EI     +    +++LYM 
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMG 107

Query: 358 GNSFTQWKVEGQSNASLGELKQLS----RLTTLEVHI 390
            N+     +      ++  L  L      L++L   I
Sbjct: 108 FNAIRY--LPPHVFQNVPLLTVLVLERNDLSSLPRGI 142

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.2 bits (162), Expect = 7e-12
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 4/115 (3%)

Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLP--SSLGCLINLRTLSLENCLVVDVAIIGDLKKL 304
            + D      + ++ LDL      ++           L  L+L+   + DV       KL
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 305 EILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
           + L L  + +  +  E      +  + L N  KL  I    +     LE   +  
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLI-EKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 24/156 (15%)

Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVDVAIIGDLKKLE 305
           Q      +    ++ LDL+G     +  + L     L  L+L + ++ +   +  L  L 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR 83

Query: 306 ILSLKHSSIEQLPR-----------------EIGQLTCLKLLDLSNCSKLKEIRPNVISN 348
            L L ++ +++L                      +    K + L+N  K+  +R      
Sbjct: 84  TLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN-KITMLRDLDEGC 142

Query: 349 LTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
            +R++ L +  N                    L  L
Sbjct: 143 RSRVQYLDLKLNEID----TVNFAELAASSDTLEHL 174

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 15/140 (10%), Positives = 44/140 (31%), Gaps = 3/140 (2%)

Query: 249 PDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV-AIIGDLKKLEIL 307
                     L  L+L     + +   +     L+TL L +  +  +         +  +
Sbjct: 161 FAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI 219

Query: 308 SLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367
           SL+++ +  + + +     L+  DL           +  S   R++ +    +  +   +
Sbjct: 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA-KQTVKKLTGQ 278

Query: 368 GQSNASLGELKQLSRLTTLE 387
            +   ++  L         +
Sbjct: 279 NEEECTVPTLGHYGAYCCED 298

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.9 bits (164), Expect = 1e-11
 Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 14/137 (10%)

Query: 259 LRVLDLTG----FRFHSLPSSLGCLINLRTLSL-ENCLVVDVAIIGDLKKLEILSLKHSS 313
           +  +DL+       F ++ SSL  L  L +L L  + +   V+       L  L L  +S
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 314 IE-QLP--REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQ 369
           +   +     +G  + LK L++S+ +     + +    L  LE L +  NS +     G 
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS-----GA 166

Query: 370 SNASLGELKQLSRLTTL 386
           +            L  L
Sbjct: 167 NVVGWVLSDGCGELKHL 183

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.5 bits (163), Expect = 2e-11
 Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 10/127 (7%)

Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSL---GCLINLRTLSLENCLVVDVAII 298
            L           +  L VLDL+      +             L+ L++    +     +
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV 196

Query: 299 GDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLK-EIRPNVISNLTRLEELY 356
                LE L +  ++    +P  +G  + L+ LD+S   KL  +     IS  T L+ L 
Sbjct: 197 SRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGN-KLSGDF-SRAISTCTELKLLN 253

Query: 357 M-GNSFT 362
           +  N F 
Sbjct: 254 ISSNQFV 260

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.5 bits (158), Expect = 7e-11
 Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 28/140 (20%)

Query: 251 PFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLRTLSLENCL--------------VVDV 295
           PF    + L+ LD++G +       ++     L+ L++ +                 + +
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL 276

Query: 296 A-----------IIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRP 343
           A           + G    L  L L  +     +P   G  + L+ L LS+ +   E+  
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336

Query: 344 NVISNLTRLEELYMG-NSFT 362
           + +  +  L+ L +  N F+
Sbjct: 337 DTLLKMRGLKVLDLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.2 bits (157), Expect = 1e-10
 Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 17/169 (10%)

Query: 224 ELPERLGFLKLK--LFLFFTEN-LSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCL 279
            +   L          L+   N  + +IP P     +EL  L L+      ++PSSLG L
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441

Query: 280 INLRTLSL-ENCLVVDV-AIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCS 336
             LR L L  N L  ++   +  +K LE L L  + +  ++P  +   T L  + LSN  
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN- 500

Query: 337 KLK-EIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
           +L  EI P  I  L  L  L +  NSF+     G   A LG+ + L  L
Sbjct: 501 RLTGEI-PKWIGRLENLAILKLSNNSFS-----GNIPAELGDCRSLIWL 543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.5 bits (150), Expect = 6e-10
 Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 16/167 (9%)

Query: 226 PERLGFLK-LKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLG--CLIN 281
            + L  ++ LK+        S ++P+        L  LDL+   F   +  +L       
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395

Query: 282 LRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKL 338
           L+ L L+N          + +  +L  L L  + +   +P  +G L+ L+ L L     L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-ML 454

Query: 339 K-EIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
           + EI P  +  +  LE L +  N  T     G+  + L     L+ +
Sbjct: 455 EGEI-PQELMYVKTLETLILDFNDLT-----GEIPSGLSNCTNLNWI 495

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.5 bits (145), Expect = 2e-09
 Identities = 42/184 (22%), Positives = 65/184 (35%), Gaps = 27/184 (14%)

Query: 224 ELPERLGFLK-LKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLIN 281
            +P  LG L  L+    +   L  +IP      +  L  L L        +PS L    N
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTN 491

Query: 282 LRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLS----- 333
           L  +SL N  +       IG L+ L IL L ++S    +P E+G    L  LDL+     
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551

Query: 334 --------NCS------KLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQ 379
                     S       +   R   I N    +E +   +  +++  G  +  L  L  
Sbjct: 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ--GIRSEQLNRLST 609

Query: 380 LSRL 383
            +  
Sbjct: 610 RNPC 613

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 9e-09
 Identities = 28/145 (19%), Positives = 47/145 (32%), Gaps = 14/145 (9%)

Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV--AIIGD 300
            +S  +          L  LD++   F +    LG    L+ L +    +       I  
Sbjct: 189 KISGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST 245

Query: 301 LKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-G 358
             +L++L++  +     +P     L  L+ L L+      EI   +      L  L + G
Sbjct: 246 CTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303

Query: 359 NSFTQWKVEGQSNASLGELKQLSRL 383
           N F      G      G    L  L
Sbjct: 304 NHFY-----GAVPPFFGSCSLLESL 323

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 25/155 (16%)

Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPS--SLGCLINLRTLSLENC---LVVDVA 296
           +++  +    F+    L  LDL+       + +  SLG    L+ L++ +        V+
Sbjct: 88  HINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 145

Query: 297 IIGDLKKLEILSLKHSSIE-QLPREI---GQLTCLKLLDLSNCSKLKEIRPNVISNLTRL 352
               L  LE+L L  +SI                LK L +S      ++    +S    L
Sbjct: 146 GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-D--VSRCVNL 202

Query: 353 EELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTL 386
           E L +  N+F+           +  L   S L  L
Sbjct: 203 EFLDVSSNNFST---------GIPFLGDCSALQHL 228

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 22/168 (13%), Positives = 58/168 (34%), Gaps = 19/168 (11%)

Query: 224 ELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH---SLPSSLGCLI 280
            +P  +     K+       ++ +    + +     +     G            L  L 
Sbjct: 553 TIPAAMFKQSGKIAA---NFIAGKRY-VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608

Query: 281 NLRTLSLENCLV--VDVAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSK 337
                ++ + +          +   +  L + ++ +   +P+EIG +  L +L+L + + 
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH-ND 667

Query: 338 LK-EIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
           +   I P+ + +L  L  L +  N        G+   ++  L  L+ +
Sbjct: 668 ISGSI-PDEVGDLRGLNILDLSSNKLD-----GRIPQAMSALTMLTEI 709

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 10/146 (6%)

Query: 245 SLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL--VVDVAIIGDLK 302
           S  I +  F+GM +L  + +      ++P  L    +L  L L+      VD A +  L 
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLN 216

Query: 303 KLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNS 360
            L  L L  +SI  +          L+ L L+N  KL ++ P  +++   ++ +Y+  N+
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKV-PGGLADHKYIQVVYLHNNN 274

Query: 361 FTQWKVEGQSNASLGELKQLSRLTTL 386
            +   +        G   + +  + +
Sbjct: 275 IS--AIGSNDFCPPGYNTKKASYSGV 298

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 33/159 (20%), Positives = 67/159 (42%), Gaps = 15/159 (9%)

Query: 243 NLSLQ-IPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVDVA--II 298
           +L L+ +P        +  +LDL   +   +       L NL TL L N  +  ++    
Sbjct: 40  DLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 96

Query: 299 GDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358
             L KLE L L  + +++LP        L+ L +    ++ ++R +V + L ++  + +G
Sbjct: 97  APLVKLERLYLSKNQLKELPE--KMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELG 153

Query: 359 -NSFTQWKVEGQSNASLGELKQLS----RLTTLEVHIPD 392
            N      +E  +   + +L  +      +TT+   +P 
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 192

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 10/128 (7%)

Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVV 293
           T  L LQ      I D  F+ +  L  L L   +   + P +   L+ L  L L    + 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 294 DVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLS-NCSKLKEIRPNVISNLTR 351
           ++      K L+ L +  + I ++ + +   L  + +++L  N  K   I       + +
Sbjct: 114 ELP-EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172

Query: 352 LEELYMGN 359
           L  + + +
Sbjct: 173 LSYIRIAD 180

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 36/186 (19%)

Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSL-------------------GC 278
           L    N   +I    F  + +L  L L+  +   LP  +                     
Sbjct: 81  LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV 140

Query: 279 ---LINLRTLSL-ENCL---VVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLD 331
              L  +  + L  N L    ++      +KKL  + +  ++I  +P+  G    L  L 
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELH 198

Query: 332 LSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLS----RLTTL 386
           L    K+ ++    +  L  L +L +  NS +   V+  S A+   L++L     +L  +
Sbjct: 199 LDGN-KITKVDAASLKGLNNLAKLGLSFNSIS--AVDNGSLANTPHLRELHLNNNKLVKV 255

Query: 387 EVHIPD 392
              + D
Sbjct: 256 PGGLAD 261

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 16/113 (14%), Positives = 34/113 (30%), Gaps = 16/113 (14%)

Query: 248 IPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEIL 307
           + +        LR L L   +   +P  L     ++ + L N          ++  +   
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN---------NNISAIGSN 281

Query: 308 SLKHSSIEQLPREIGQLTCLKLLDLS-NCSKLKEIRPNVISNLTRLEELYMGN 359
                     P    +      + L  N  +  EI+P+    +     + +GN
Sbjct: 282 DFCP------PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.9 bits (160), Expect = 2e-11
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 11/146 (7%)

Query: 238 LFFTENLSLQIPD-PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVA 296
           LF  EN   +I D    + + +L+ L L       + + L  L  L +L L N  + D+ 
Sbjct: 92  LFLDEN---KIKDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDIT 147

Query: 297 IIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELY 356
           ++  L KL+ LSL+ + I  +   +  LT L+ L LS    + ++R   ++ L  L+ L 
Sbjct: 148 VLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLE 203

Query: 357 M-GNSFTQWKVEGQSN-ASLGELKQL 380
           +         +  QSN      +K  
Sbjct: 204 LFSQECLNKPINHQSNLVVPNTVKNT 229

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.0 bits (155), Expect = 9e-11
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%)

Query: 252 FFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKH 311
             + +  +  L L G +   +   L  L NL  L L+   + D++ + DLKKL+ LSL+H
Sbjct: 60  GIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 118

Query: 312 SSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQS 370
           + I  +   +  L  L+ L L N  K+ +I    +S LT+L+ L +  N  +        
Sbjct: 119 NGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS-------- 166

Query: 371 NASLGELKQLSRLTTL 386
              +  L  L++L  L
Sbjct: 167 --DIVPLAGLTKLQNL 180

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 13/116 (11%)

Query: 274 SSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLS 333
                       +L+   V D     +L  ++ +   +S I+ +   I  L  +  L L+
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLN 73

Query: 334 NCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
              KL +I+P  ++NL  L  L++                L  LK L +L +L + 
Sbjct: 74  GN-KLTDIKP--LTNLKNLGWLFLDE---------NKIKDLSSLKDLKKLKSLSLE 117

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 11/129 (8%)

Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSLENCL-- 291
           T+ L LQ      +P   F  +T+LR+L L   +  +LP+ +   L NL TL + +    
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 292 VVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
            + + +   L  L  L L  + ++ LP  +   LT L  L L    +L+ +   V   LT
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLT 157

Query: 351 RLEELYMGN 359
            L+EL + N
Sbjct: 158 SLKELRLYN 166

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.5 bits (157), Expect = 6e-11
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 4/115 (3%)

Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLPSS--LGCLINLRTLSLENCLVVDVAIIGDLKKL 304
            + D      + ++ LDL      ++  +        L  L+L+   + DV       KL
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 305 EILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
           + L L  + +  +  E      +  + L N  KL  I    +     LE   +  
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLI-EKALRFSQNLEHFDLRG 246

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.5 bits (139), Expect = 8e-09
 Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 24/156 (15%)

Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVDVAIIGDLKKLE 305
           Q      +    ++ LDL+G     +  + L     L  L+L + ++ +   +  L  L 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR 83

Query: 306 ILSLKHSSIEQLPR-----------------EIGQLTCLKLLDLSNCSKLKEIRPNVISN 348
            L L ++ +++L                      +    K + L+N  K+  +R      
Sbjct: 84  TLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN-KITMLRDLDEGC 142

Query: 349 LTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
            +R++ L +  N                    L  L
Sbjct: 143 RSRVQYLDLKLNEIDTV----NFAELAASSDTLEHL 174

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 66/444 (14%), Positives = 143/444 (32%), Gaps = 87/444 (19%)

Query: 253 FEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSL-ENCL-VVDVAIIGDLKKLEILSL 309
            +     ++  +T        +S      N++ L L  N L  +  A +    KLE+L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEG 368
             + + +   ++  L+ L+ LDL+N   ++E+          +E L+   N+ +  +V  
Sbjct: 66  SSNVLYETL-DLESLSTLRTLDLNNN-YVQEL-----LVGPSIETLHAANNNIS--RVSC 116

Query: 369 QSNASLGELKQLS--RLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSK 426
                   +  L+  ++T L           +DL      R +                 
Sbjct: 117 SRGQGKKNI-YLANNKITML-----------RDLDEGCRSRVQ----------------- 147

Query: 427 TLKLQLNNSTYLGYG-MKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHV-HNG 484
            L L+LN    + +  +       E L+L       N ++++  +  FA+L+ L +  N 
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQ-----YNFIYDVKGQVVFAKLKTLDLSSN- 201

Query: 485 PEILHILNSDGRVGTFPLLESLFL-HNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEG-- 541
                +        +   +  + L +N +         V + +  +   NL    + G  
Sbjct: 202 ----KLAFMGPEFQSAAGVTWISLRNNKL---------VLIEKALRFSQNLEHFDLRGNG 248

Query: 542 --CHRVKHLFPFSLVKNLLQLQKVK-VTDCTNLKLIVGKESENSAHKNGSISGVYFRKLH 598
             C  ++  F  +     +  Q VK +T     +  V       A+    +   +  +L 
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308

Query: 599 FLKLQHLPQLTSSGFDLETPTNTQGSNPGI---------IAEGDPKDFTSLFNERVVFPS 649
            LK +    L+  G + E     + +                   +             +
Sbjct: 309 ALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRK-------QA 361

Query: 650 LKKLKLSSINVEKIWLNSFSAIES 673
              L+     +++   N   A   
Sbjct: 362 KITLEQKKKALDEQVSNGRRAHAE 385

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.4 bits (152), Expect = 9e-11
 Identities = 33/142 (23%), Positives = 67/142 (47%), Gaps = 17/142 (11%)

Query: 247 QIPD-PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLE 305
           QI D    + +T++  L+L+G    ++ S++  L +++TL L +  + DV  +  L  L+
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 306 ILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQW 364
           +L L  + I  +   +  LT L+ L + N  ++ ++ P  ++NL++L  L    N  +  
Sbjct: 133 VLYLDLNQITNIS-PLAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKIS-- 186

Query: 365 KVEGQSNASLGELKQLSRLTTL 386
                    +  L  L  L  +
Sbjct: 187 --------DISPLASLPNLIEV 200

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 242 ENLSL---QIPD-PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAI 297
           + L L   QI D     G++ L+VL L   +  ++ S L  L NL+ LS+ N  V D+  
Sbjct: 110 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTP 168

Query: 298 IGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357
           + +L KL  L    + I  +   +  L  L  + L N  ++ ++ P  ++N + L  + +
Sbjct: 169 LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNN-QISDVSP--LANTSNLFIVTL 224

Query: 358 -GNSFTQWKVEGQSN 371
              + T   V   +N
Sbjct: 225 TNQTITNQPVFYNNN 239

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 13/116 (11%)

Query: 274 SSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLS 333
                L N   ++     V D     DL  +  LS   + +  +   +  L  L  L+L 
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELK 71

Query: 334 NCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
           +  ++ ++ P  + NLT++ EL +  S    K       ++  +  L  + TL++ 
Sbjct: 72  DN-QITDLAP--LKNLTKITELEL--SGNPLK-------NVSAIAGLQSIKTLDLT 115

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 3/98 (3%)

Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
                +++L  L     +   + S L  L NL  + L+N  + DV+ + +   L I++L 
Sbjct: 167 TPLANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225

Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISN 348
           + +I   P        L + ++        I P  IS+
Sbjct: 226 NQTITNQPVFYNNN--LVVPNVVKGPSGAPIAPATISD 261

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 18/168 (10%)

Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL-- 291
            ++L L       I +   +    L+ L LT    +++   S   L +L  L L      
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 292 VVDVAIIGDLKKLEILSLKHSSIEQLPREI--GQLTCLKLLDLSNCSKLKEIRPNVISNL 349
            +  +    L  L  L+L  +  + L        LT L++L + N     +I+    + L
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173

Query: 350 TRLEELYM-GNSFTQWKVEGQSNASLGELKQLS----RLTTLEVHIPD 392
           T LEEL +  +       E +S  S+  +  L     +   L     D
Sbjct: 174 TFLEELEIDASDLQ--SYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 14/123 (11%)

Query: 237 FLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVA 296
            L       + + + F +  + +  L+L      +   S   L    T SL         
Sbjct: 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE--LSTGETNSLIK------- 252

Query: 297 IIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELY 356
                     + +   S+ Q+ + + Q++ L  L+ S   +LK +   +   LT L++++
Sbjct: 253 ----KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIW 307

Query: 357 MGN 359
           +  
Sbjct: 308 LHT 310

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 9/138 (6%)

Query: 230 GFLKLK--LFLFFTENLSLQIPDP-FFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTL 285
            FL L+    L F  +   Q+ +   F  +  L  LD++        +     L +L  L
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 286 SLENC---LVVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEI 341
            +            I  +L+ L  L L    +EQL       L+ L++L++++  +LK +
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSV 509

Query: 342 RPNVISNLTRLEELYMGN 359
              +   LT L+++++  
Sbjct: 510 PDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.7 bits (150), Expect = 4e-10
 Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 4/119 (3%)

Query: 245 SLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL---VVDVAIIGDL 301
                     G T L+ LDL+     ++ S+   L  L  L  ++     + + ++   L
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 302 KKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
           + L  L + H+        I   L+ L++L ++  S  +   P++ + L  L  L +  
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.3 bits (149), Expect = 5e-10
 Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 9/149 (6%)

Query: 220 RGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGC 278
              Y++P+ L     K  L  + N    +    F    EL+VLDL+     ++   +   
Sbjct: 17  LNFYKIPDNL-PFSTK-NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74

Query: 279 LINLRTLSLENC--LVVDVAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNC 335
           L +L TL L       + +     L  L+ L    +++  L    IG L  LK L++++ 
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 336 SKLKEI-RPNVISNLTRLEELYM-GNSFT 362
             ++    P   SNLT LE L +  N   
Sbjct: 135 -LIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 6e-09
 Identities = 55/340 (16%), Positives = 101/340 (29%), Gaps = 36/340 (10%)

Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL--PSSLGCLINLRTLSLENCL--VV 293
           L   E     + +     +  L+ L++      S   P     L NL  L L +     +
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 294 DVAIIGDLKKLEI----LSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349
               +  L ++ +    L L  + +  +     +   L  L L N      +    I  L
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 350 TRLEE--LYMGNSFTQWKVEGQSNASLGELKQLS----RLTTLEVHIPDAQVMPQDLVFV 403
             LE   L +G    +  +E    ++L  L  L+    RL  L+ ++ D   +   L   
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL--T 282

Query: 404 ELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNV 463
            +  F +    +    D         L+L N  +            +   L  L    N 
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF------GQFPTLKLKSLKRLTFTSNK 336

Query: 464 VHELDDEEGFARLRHLHV-HNGPEILHILNSDGRVGTFPLLESLFL-HNLINLEKVCDGK 521
                 E     L  L +  N   +               L+ L L  N +         
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRN--GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-------- 386

Query: 522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQ 561
             ++ +      L  +  +    +K +  FS+  +L  L 
Sbjct: 387 -TMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLI 424

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 10/113 (8%)

Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
           P  + +  L  +         LP       +L ++   N ++ ++  + +L  L  +   
Sbjct: 189 PELQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNILEELPELQNLPFLTTIYAD 245

Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363
           ++ ++ LP     L  L + D      L ++ P +  +LT L+     N F+ 
Sbjct: 246 NNLLKTLPDLPPSLEALNVRDN----YLTDL-PELPQSLTFLDVSE--NIFSG 291

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 47/196 (23%)

Query: 224 ELPERLGFLK-LKLFLFFTENLSLQIPDPFFEG------------MTELRVLDLTGFRFH 270
           E+P     +K    +           P    E               +   L+L      
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 271 SLPSSLGCLINLRTLSLENCLVVDV-AIIGDLKKLEILSLKHSSIEQLPR---------- 319
           SLP       +L +L      + ++  +   LK L + +    ++  LP           
Sbjct: 85  SLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN 141

Query: 320 ------EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNAS 373
                 E+   + LK++D+ N   LK++ P++  +L  +      N              
Sbjct: 142 QLEKLPELQNSSFLKIIDVDNN-SLKKL-PDLPPSLEFIAAGN--NQLE----------E 187

Query: 374 LGELKQLSRLTTLEVH 389
           L EL+ L  LT +   
Sbjct: 188 LPELQNLPFLTAIYAD 203

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 27/180 (15%)

Query: 221 GIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLI 280
           G+  LPE    L+  L    + N   ++P+     +  L V +        LP       
Sbjct: 82  GLSSLPELPPHLE-SLVA--SCNSLTELPELPQS-LKSLLVDNNNLKALSDLPP------ 131

Query: 281 NLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKE 340
            L  L + N  +  +  + +   L+I+ + ++S+++LP     L     +   N  +L+E
Sbjct: 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE---FIAAGNN-QLEE 187

Query: 341 IRPNVISNLTRLEELYM-GNSFTQWKVEGQS--------N--ASLGELKQLSRLTTLEVH 389
           +    + NL  L  +Y   NS  +      S        N    L EL+ L  LTT+   
Sbjct: 188 LPE--LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 245

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 22/163 (13%)

Query: 224 ELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLR 283
            LP+    L+    L   +N    +P    E    L  LD++   F  L        NL 
Sbjct: 251 TLPDLPPSLEA---LNVRDNYLTDLP----ELPQSLTFLDVSENIFSGLSELPP---NLY 300

Query: 284 TLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP 343
            L+  +  +    +      LE L++ ++ + +LP    +   L+ L  S    L E+ P
Sbjct: 301 YLNASSNEIRS--LCDLPPSLEELNVSNNKLIELPALPPR---LERLIASFN-HLAEV-P 353

Query: 344 NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTL 386
            +  NL +L   Y  N   ++        S+ +L+  S L  +
Sbjct: 354 ELPQNLKQLHVEY--NPLREFPDI---PESVEDLRMNSHLAEV 391

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 20/138 (14%), Positives = 46/138 (33%), Gaps = 17/138 (12%)

Query: 222 IYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLIN 281
           + ELP     L+    L  + N   ++P    E    L+ L +        P     + +
Sbjct: 329 LIELPALPPRLE---RLIASFNHLAEVP----ELPQNLKQLHVEYNPLREFPDIPESVED 381

Query: 282 LRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEI 341
           LR  S          +    + L+ L ++ + + + P     +  L++       ++ + 
Sbjct: 382 LRMNSHLA------EVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSE----RVVDP 431

Query: 342 RPNVISNLTRLEELYMGN 359
                    +LE+    +
Sbjct: 432 YEFAHETTDKLEDDVFEH 449

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 24/158 (15%), Positives = 43/158 (27%), Gaps = 28/158 (17%)

Query: 255 GMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDL------------- 301
             T L+           +P     + +              A  G+              
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 302 --KKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-G 358
             ++   L L +  +  LP     L  L      +C+ L E+ P +  +L  L       
Sbjct: 69  LDRQAHELELNNLGLSSLPELPPHLESLVA----SCNSLTEL-PELPQSLKSLLVDNNNL 123

Query: 359 NSFTQW-------KVEGQSNASLGELKQLSRLTTLEVH 389
            + +          V       L EL+  S L  ++V 
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD 161

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 253 FEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHS 312
            + + +L+ L L       + + L  L  L +L L N  + D+ ++  L KL+ LSL+ +
Sbjct: 108 LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 166

Query: 313 SIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSN 371
            I  +   +  LT L+ L LS    + ++R   ++ L  L+ L +         +  QSN
Sbjct: 167 QISDIV-PLAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLELFSQECLNKPINHQSN 222

Query: 372 -ASLGELKQL 380
                 +K  
Sbjct: 223 LVVPNTVKNT 232

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.3 bits (144), Expect = 8e-10
 Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 16/137 (11%)

Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
              + +  +  L L G +   +   L  L NL  L L+   V D++ + DLKKL+ LSL+
Sbjct: 62  QGIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120

Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQ 369
           H+ I  +   +  L  L+ L L N  K+ +I    +S LT+L+ L +  N  +       
Sbjct: 121 HNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS------- 169

Query: 370 SNASLGELKQLSRLTTL 386
               +  L  L++L  L
Sbjct: 170 ---DIVPLAGLTKLQNL 183

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 13/116 (11%)

Query: 274 SSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLS 333
            S          +L+   V D     +L  ++ +   +S I+ +   I  L  +  L L+
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLN 76

Query: 334 NCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
              KL +I+P  ++NL  L  L++                L  LK L +L +L + 
Sbjct: 77  GN-KLTDIKP--LANLKNLGWLFLDE---------NKVKDLSSLKDLKKLKSLSLE 120

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 4/124 (3%)

Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV-A 296
           L  +ENL            T L  L+L       L      L  L TL L +  +  +  
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT-LPVLGTLDLSHNQLQSLPL 94

Query: 297 IIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355
           +   L  L +L +  + +  LP      L  L+ L L   ++LK + P +++   +LE+L
Sbjct: 95  LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKL 153

Query: 356 YMGN 359
            + N
Sbjct: 154 SLAN 157

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 257 TELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIE 315
            +  +L L+    ++   + L     L  L+L+   +  + + G L  L  L L H+ ++
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 316 QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
            LP     L  L +LD+S   +L  +    +  L  L+ELY+  
Sbjct: 91  SLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKG 133

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 4/112 (3%)

Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL--VVDVAIIGDLKKLEILS 308
                +  L  LDL+  +  SLP     L  L  L +       + +  +  L +L+ L 
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130

Query: 309 LKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
           LK + ++ LP  +      L+ L L+N + L E+   +++ L  L+ L +  
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQE 181

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.1 bits (151), Expect = 4e-10
 Identities = 36/169 (21%), Positives = 63/169 (37%), Gaps = 11/169 (6%)

Query: 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLE 288
              +L+L    ++   L I    F  +  LR+LDL   + + L       L +L  L L 
Sbjct: 46  FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105

Query: 289 NC----LVVDVAIIGDLKKLEILSLKHSSIEQLPRE--IGQLTCLKLLDLSNCSKLKEIR 342
            C     V+      +LK L  L L  + I  L      G+L  LK +D S+  ++  + 
Sbjct: 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVC 164

Query: 343 PNVISNLT--RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
            + +  L    L    +  +    +V       +   + +  L  L+V 
Sbjct: 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV-LEILDVS 212

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.4 bits (144), Expect = 3e-09
 Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 13/154 (8%)

Query: 219 FRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTG--FRFHSLPSSL 276
           F  + ++P+ L   +    L  + N    +    F  + +L++L+L            + 
Sbjct: 13  FCNLTQVPQVLNTTE---RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 277 GCLINLRTLSLENC--LVVDVAIIGDLKKLEILSLKHSSIEQL---PREIGQLTCLKLLD 331
             L NLR L L +     +       L  L  L L    +            L  L  LD
Sbjct: 70  RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129

Query: 332 LSNCSKLKEIRPN-VISNLTRLEELYM-GNSFTQ 363
           LS   +++ +  +     L  L+ +    N    
Sbjct: 130 LSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 21/168 (12%)

Query: 237 FLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVDV 295
            L  + NL  ++    F G+ ++  +DL       +   +   L  L+TL L +  +  +
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377

Query: 296 AIIGDLKKL-----------------EILSLKHSSIEQLPRE--IGQLTCLKLLDLSNCS 336
             I  +  +                  ++ L  + +E L     + ++  L++L L+   
Sbjct: 378 HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437

Query: 337 KLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
                     S    LE+L++  N                 L  L  L
Sbjct: 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 4/149 (2%)

Query: 216 SIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-S 274
           S            L  L L            ++    FEG++ L+VL L     +SLP  
Sbjct: 440 SCSGDQTPSENPSLEQLFLG-ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498

Query: 275 SLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSN 334
               L  LR LSL +  +  ++       LEIL +  + +     ++     L +LD+++
Sbjct: 499 VFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDV--FVSLSVLDITH 556

Query: 335 CSKLKEIRPNVISNLTRLEELYMGNSFTQ 363
              + E   +   N      + +      
Sbjct: 557 NKFICECELSTFINWLNHTNVTIAGPPAD 585

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)

Query: 248 IPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSLENCLVVDVA--IIGDLKKL 304
           I D  ++ ++ L  L LTG    SL       L +L+ L      +  +    IG LK L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 305 EILSLKHSSIEQLPRE--IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357
           + L++ H+ I+          LT L+ LDLS+  K++ I    +  L ++  L +
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNL 180

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSLENCLV- 292
           T+NL L       +    F    EL+VLDL+     ++       L +L TL L    + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 293 -VDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
            + +     L  L+ L    +++  L     G L  LK L++++        P   SNLT
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 351 RLEELYMGN 359
            LE L + +
Sbjct: 150 NLEHLDLSS 158

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 11/139 (7%)

Query: 257 TELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL--VVDVAIIGDLKKLEILSLKHSS 313
              + LDL+      L S S      L+ L L  C    ++      L  L  L L  + 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 314 IEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG-NSFTQWKVEGQSN 371
           I+ L       L+ L+ L       L  +    I +L  L+EL +  N    +K+     
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YF 145

Query: 372 ASLGELKQLS----RLTTL 386
           ++L  L+ L     ++ ++
Sbjct: 146 SNLTNLEHLDLSSNKIQSI 164

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 9/130 (6%)

Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS--LGCLINLRTLSLENCL--VV 293
           L   E     + +     +  L+ L++      S         L NL  L L +     +
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 294 DVAIIGDLKKLEI----LSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349
               +  L ++ +    L L  + +  +     +   LK L L    +LK +   +   L
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRL 223

Query: 350 TRLEELYMGN 359
           T L+++++  
Sbjct: 224 TSLQKIWLHT 233

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 17/166 (10%)

Query: 222 IYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLIN 281
           +  LP     L     L+   N    +P       + L+ L ++G R  SLP        
Sbjct: 193 LASLPTLPSELY---KLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLPVLPS---E 242

Query: 282 LRTLSLENCLVVDV-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKE 340
           L+ L +    +  +  +   L  L   S+  + + +LP  +  L+    ++L     L E
Sbjct: 243 LKELMVSGNRLTSLPMLPSGLLSL---SVYRNQLTRLPESLIHLSSETTVNLEGN-PLSE 298

Query: 341 IRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTL 386
                +  +T            ++ + G S         L+    L
Sbjct: 299 RTLQALREITSAPGY--SGPIIRFDMAGASAPRETRALHLAAADWL 342

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.0 bits (140), Expect = 6e-09
 Identities = 37/171 (21%), Positives = 61/171 (35%), Gaps = 28/171 (16%)

Query: 220 RGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL 279
            G+  LP+ L      L +   +N    +P        ELR L+++G +  SLP     L
Sbjct: 50  SGLTTLPDCLPAHITTLVIP--DNNLTSLP----ALPPELRTLEVSGNQLTSLPVLPPGL 103

Query: 280 INLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLK 339
           + L   S          +      L  L +  + +  LP     L     L +S+  +L 
Sbjct: 104 LELSIFSNPLT-----HLPALPSGLCKLWIFGNQLTSLPVLPPGLQE---LSVSDN-QLA 154

Query: 340 EIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLS----RLTTL 386
            + P + S L +L      N  T              L++LS    +L +L
Sbjct: 155 SL-PALPSELCKLWAY--NNQLT------SLPMLPSGLQELSVSDNQLASL 196

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 40/188 (21%), Positives = 63/188 (33%), Gaps = 47/188 (25%)

Query: 222 IYELPERLGFLK-LKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLI 280
           +  LP     L  L +F     +L            + L  L + G +  SLP       
Sbjct: 93  LTSLPVLPPGLLELSIFSNPLTHLPALP--------SGLCKLWIFGNQLTSLPVLPP--- 141

Query: 281 NLRTLSLENCLVVDV-AIIGDLKKLEI-----------------LSLKHSSIEQLPREIG 322
            L+ LS+ +  +  + A+  +L KL                   LS+  + +  LP    
Sbjct: 142 GLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPS 201

Query: 323 QLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLS- 381
           +L  L   +     +L  + P + S L  L      N  T             ELK+L  
Sbjct: 202 ELYKLWAYNN----RLTSL-PALPSGLKELIVSG--NRLTSL------PVLPSELKELMV 248

Query: 382 ---RLTTL 386
              RLT+L
Sbjct: 249 SGNRLTSL 256

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 257 TELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQ 316
               VL++      +LP  L    ++ TL + +  +    +     +L  L +  + +  
Sbjct: 40  NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS--LPALPPELRTLEVSGNQLTS 95

Query: 317 LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE 353
           LP     L  L +      + L    P + S L +L 
Sbjct: 96  LPVLPPGLLELSIFSNPL-THL----PALPSGLCKLW 127

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 14/136 (10%)

Query: 255 GMTELRVLDLTGFRFH---SLPSSLGCLINLRTLSL--ENCLVVDV-AIIGDLKKLEILS 308
               +  LDL+G        +PSSL  L  L  L +   N LV  +   I  L +L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 309 LKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKV 366
           + H+++   +P  + Q+  L  LD S  +    + P  IS+L  L  +   GN  +    
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL-PPSISSLPNLVGITFDGNRIS---- 162

Query: 367 EGQSNASLGELKQLSR 382
            G    S G   +L  
Sbjct: 163 -GAIPDSYGSFSKLFT 177

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 48.7 bits (117), Expect = 3e-06
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 224 ELPERLGFL-KLKLFLFFTEN-LSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLI 280
            +P+  G   KL   +  + N L+ +IP  F      L  +DL+            G   
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 281 NLRTLSLE-NCLVVDVAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSN 334
           N + + L  N L  D+  +G  K L  L L+++ I   LP+ + QL  L  L++S 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.1 bits (113), Expect = 9e-06
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 11/91 (12%)

Query: 298 IGDLKKLEILSLKHSSIE---QLPREIGQLTCLKLLDLSNCSKLK-EIRPNVISNLTRLE 353
                ++  L L   ++     +P  +  L  L  L +   + L   I P  I+ LT+L 
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLH 104

Query: 354 ELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
            LY+   + +     G     L ++K L  L
Sbjct: 105 YLYITHTNVS-----GAIPDFLSQIKTLVTL 130

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 59.2 bits (143), Expect = 2e-09
 Identities = 36/240 (15%), Positives = 63/240 (26%), Gaps = 38/240 (15%)

Query: 224 ELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLR 283
            LPE    L+   ++    N    +P    E  T L VL +   +   LP       +L 
Sbjct: 134 MLPELPALLE---YINADNNQLTMLP----ELPTSLEVLSVRNNQLTFLPELPE---SLE 183

Query: 284 TLSLENCLVVDV-AIIGDLKKLE----ILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKL 338
            L +   L+  + A+       E        + + I  +P  I  L     + L +   L
Sbjct: 184 ALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN-PL 242

Query: 339 KEIRPNVISNLTRLEELYMGN-------------------SFTQWKVEGQSNASLGELKQ 379
                  +S  T   + +                      + T W  E + +        
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA 302

Query: 380 LSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLG 439
                           +   +       FR     V +W +    S  L+ Q        
Sbjct: 303 FEHEEHANTFSAFLDRLSDTVSARNTSGFR---EQVAAWLEKLSASAELRQQSFAVAADA 359

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.0 bits (114), Expect = 8e-06
 Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSL--GCLINLRTLSLENCLVVDV-AIIG 299
           N        +F    +     L G   +   S L    +     L L    +  +   + 
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLP 79

Query: 300 DLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL 352
              ++ +L +  +++  LP     L  L   D     +L  + P + ++L  L
Sbjct: 80  --PQITVLEITQNALISLPELPASLEYLDACDN----RLSTL-PELPASLKHL 125

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 248 IPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSL-ENCL-VVDVAIIGDLKKL 304
           +    F   T+L  L L     + +   +   L +L  L+L +N L  +D  +  +L KL
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349

Query: 305 EILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
           E+L L ++ I  L  +    L  LK L L    +LK +   +   LT L+++++  
Sbjct: 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 11/157 (7%)

Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENCLVVDVAIIGD- 300
              L I +  F G++ L +L L   +F  L +     L NL  L+L  C +    + G+ 
Sbjct: 65  TPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF 124

Query: 301 ---LKKLEILSLKHSSIEQLPREI--GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355
              L  LE+L L+ ++I+++        +    +LDL+  +K+K I    + N       
Sbjct: 125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF-NKVKSICEEDLLNFQGKHFT 183

Query: 356 YM---GNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
            +     +              G   + + +TTL++ 
Sbjct: 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 19/135 (14%)

Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLI---------------NLRTLSL 287
                +   FF+ +   ++  L     +++ SS G                   ++T  L
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282

Query: 288 E-NCL-VVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPN 344
             + +  +  ++      LE L+L  + I ++       LT L  L+LS  + L  I   
Sbjct: 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ-NFLGSIDSR 341

Query: 345 VISNLTRLEELYMGN 359
           +  NL +LE L +  
Sbjct: 342 MFENLDKLEVLDLSY 356

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 28/127 (22%)

Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD 294
              + L       + +  F  + +L+ L +                    L + N     
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ--------------QTPGLVIRN----- 72

Query: 295 VAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCS-KLKEIRPNVISNLTRL 352
                 L  L IL L ++   QL       L  L++L L+ C+     +  N    LT L
Sbjct: 73  -NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131

Query: 353 EELYMGN 359
           E L + +
Sbjct: 132 EMLVLRD 138

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.2 bits (138), Expect = 9e-09
 Identities = 52/335 (15%), Positives = 114/335 (34%), Gaps = 43/335 (12%)

Query: 241 TENLSL------QIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENCLVV 293
           T  L++      ++       +++LR+L ++  R   L  S       L  L L +  +V
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 294 DVAIIGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351
            ++       L+ L L  ++ + LP   E G ++ LK L LS    L++     I++L  
Sbjct: 83  KIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKSSVLPIAHLNI 140

Query: 352 LEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRIC 411
            + L +           ++     + + L    T  +HI    V P +  F  +    + 
Sbjct: 141 SKVLLVLG---------ETYGEKEDPEGLQDFNTESLHI----VFPTNKEFHFILDVSVK 187

Query: 412 IGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEE 471
                  S        L+    +             +  +L L+ +    N    +    
Sbjct: 188 TVANLELS---NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244

Query: 472 GFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINL------EKVCDGKVRLN 525
               + +  + N   +   L+      +   L++L +H +++         + +    +N
Sbjct: 245 WHTTVWYFSISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303

Query: 526 EDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQL 560
             + + S  R++         H+   S +   L L
Sbjct: 304 IKNFTVSGTRMV---------HMLCPSKISPFLHL 329

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.5 bits (131), Expect = 8e-08
 Identities = 20/117 (17%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 245 SLQIPDPFFEGMTELRVLDLTG--FRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLK 302
            L         M  L+ LD++     +           +L +L++ + ++ D        
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP 421

Query: 303 KLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
           ++++L L  + I+ +P+++ +L  L+ L++++  +LK +   +   LT L+++++  
Sbjct: 422 RIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 37/291 (12%), Positives = 90/291 (30%), Gaps = 13/291 (4%)

Query: 75  NQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMG 134
             L  S+   I  ++     + L   + + ++ + L               +    +++ 
Sbjct: 125 THLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF-NTESLHIVFPTNKEFHFILD 183

Query: 135 LRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEKLLFN 194
           + + T A+   +    V          S+L    +        + +      +  ++L  
Sbjct: 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243

Query: 195 IQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFE 254
           + +       +  +          F       + L   ++   +F             +E
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF------PQSYIYE 297

Query: 255 GMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVDVA--IIGDLKKLEILSLKH 311
             + + + + T      +       +     L   N L+ D      G L +LE L L+ 
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357

Query: 312 SSIEQLPREIG---QLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
           + +++L +      Q+  L+ LD+S  S   + +    S    L  L M +
Sbjct: 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 8/132 (6%)

Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAI 297
           +  T  L  Q     +      R LDL G++   + +    L     +   +  +  +  
Sbjct: 2   VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 59

Query: 298 IGDLKKLEILSLKHSSIEQLPREIGQ-LTCLKLLDLSNC--SKLKEIRPNVISNLTRLEE 354
              L++L+ L + ++ I ++   + Q L  L  L L+N    +L ++ P  +++L  L  
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP--LASLKSLTY 117

Query: 355 LY-MGNSFTQWK 365
           L  + N  T  K
Sbjct: 118 LCILRNPVTNKK 129

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 5/117 (4%)

Query: 248 IPDPFFEGMTELRVLDLTGFRFHSLPSSLGC-LINLRTLSL-ENCLVVDV---AIIGDLK 302
           I    F+ +  L+ L ++      LP       +    L + +N  +  +   + +G   
Sbjct: 95  INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154

Query: 303 KLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
           +  IL L  + I+++       T L  L+LS+ + L+E+  +V    +    L +  
Sbjct: 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 13/132 (9%)

Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSL--PSSLGCLINLRTLSLENC-- 290
              L         I    F G  +L  ++++      +        L  L  + +E    
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 291 -LVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQ-LTCLKLLDLSNCSKLKEIRPNVISN 348
            L ++     +L  L+ L + ++ I+ LP           LLD+ +   +  I  N    
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 349 LT-RLEELYMGN 359
           L+     L++  
Sbjct: 152 LSFESVILWLNK 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 11/130 (8%)

Query: 258 ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQL 317
           E   L         + ++L  L   + L+L    +  ++ +  ++ L ILSL  + I+++
Sbjct: 26  EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKI 85

Query: 318 PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG-NSFTQWKVEGQSNASLGE 376
                    L+ L +S   ++  +    I  L  L  LYM  N  T W         + +
Sbjct: 86  ENLDAVADTLEELWISYN-QIASLSG--IEKLVNLRVLYMSNNKITNWG-------EIDK 135

Query: 377 LKQLSRLTTL 386
           L  L +L  L
Sbjct: 136 LAALDKLEDL 145

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 11/113 (9%)

Query: 254 EGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSS 313
            GM  LR+L L       + +       L  L +    +  ++ I  L  L +L + ++ 
Sbjct: 67  SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNK 126

Query: 314 IEQLP--REIGQLTCLKLLDLSN---------CSKLKEIRPNVISNLTRLEEL 355
           I       ++  L  L+ L L+           +   E R  V+  L  L++L
Sbjct: 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.1 bits (125), Expect = 5e-08
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 7/130 (5%)

Query: 240 FTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIG 299
               + L++ +     + EL VLD        +       +NL  LSL N  ++ V+ + 
Sbjct: 10  MKRRIHLELRNRTPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP 68

Query: 300 DLKKLEILSLKHSSIEQLPREIGQ-LTCLKLLDLSNC--SKLKEIRPNVISNLTRLEELY 356
            L KL+ L L  + I      + + L  L  L+LS      +  + P  +  L  L+ L 
Sbjct: 69  KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP--LKKLECLKSLD 126

Query: 357 -MGNSFTQWK 365
                 T   
Sbjct: 127 LFNCEVTNLN 136

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.1 bits (130), Expect = 7e-08
 Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 222 IYELPERLGFLKLKL--FLFFTENLSLQ-IPDPFFEGMTELRVLDLTGFRFHSLPS-SLG 277
           +  L       +L     L  + N  L  I    F  +  LR LDL+    H+L      
Sbjct: 51  LSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS 109

Query: 278 CLINLRTLSLENCLVVDVA--IIGDLKKLEILSLKHSSIEQLPREI----GQLTCLKLLD 331
            L  L  L L N  +V V      D+ +L+ L L  + I + P E+     +L  L LLD
Sbjct: 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169

Query: 332 LSNCSKLKEIRPNVISNLTRLEELY 356
           LS+ +KLK++    +  L    +  
Sbjct: 170 LSS-NKLKKLPLTDLQKLPAWVKNG 193

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 301 LKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
           L  L  L L H+ +  +  E    +  L+ LDLS+   L  +   + S+L  LE L + N
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYN 121

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 274 SSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLS 333
                L N    +L    V D+    +L  ++  +  +S+I+ L   +   T LK L LS
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLS 71

Query: 334 NCSKLKEIRPNVISNLTRLEELYMGN 359
           +  ++ ++ P  + +LT+LEEL +  
Sbjct: 72  HN-QISDLSP--LKDLTKLEELSVNR 94

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 259 LRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLP 318
           L  L L          SL  L NL  LS+ N  +  + ++G L KLE+L L  + I    
Sbjct: 108 LSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTG 166

Query: 319 REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELY 356
             + +L  +  +DL+   K           L     + 
Sbjct: 167 -GLTRLKKVNWIDLTGQ-KCVNEPVKYQPELYITNTVK 202

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 36/156 (23%)

Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD 294
              + L+      IP   F    +LR +DL+  +   L                      
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD----------------AFQ 77

Query: 295 VAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE 353
                 L+ L  L L  + I +LP+ +   L  L+LL L+  +K+  +R +   +L  L 
Sbjct: 78  -----GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLN 131

Query: 354 ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
            L + ++  Q         + G    L  + T+ + 
Sbjct: 132 LLSLYDNKLQ-------TIAKGTFSPLRAIQTMHLA 160

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 9/134 (6%)

Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTG-FRFHSLPS-SLGCLINLRTLSLENC---LV 292
           L   E     IP   F  +  +  + ++       L S S   L  +  + + N      
Sbjct: 36  LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95

Query: 293 VDVAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
           +D   + +L  L+ L + ++ ++  P   ++       +L++++   +  I  N    L 
Sbjct: 96  IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155

Query: 351 R-LEELYM-GNSFT 362
                L +  N FT
Sbjct: 156 NETLTLKLYNNGFT 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 257 TELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL--VVDVAIIGDLKKLEILSLKHS-S 313
            +     +T      +PS      + +TL L       +      +L  +  + +    +
Sbjct: 11  HQEEDFRVTCKDIQRIPSLP---PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67

Query: 314 IEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
           ++QL       L+ +  +++ N   L  I P+ +  L  L+ L + N
Sbjct: 68  LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 8/130 (6%)

Query: 238 LFFTENLSLQ-IPDPFFEGMTELRVLDLTGFRFHSLP--SSLGCLINLRTLSL-ENCLVV 293
           +      +L  I     + +  L+ L +        P  + +        L + +N  + 
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 294 DV---AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNL- 349
            +   A  G   +   L L ++    +       T L  + L+    L  I  +    + 
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 350 TRLEELYMGN 359
           +    L +  
Sbjct: 205 SGPSLLDVSQ 214

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 13/107 (12%), Positives = 30/107 (28%), Gaps = 8/107 (7%)

Query: 253 FEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHS 312
                 L  L+        +   +     L  L       +    +    +L  L    +
Sbjct: 123 VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180

Query: 313 SIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
            I +L   + Q   L  L+      + ++    ++   +L  L   +
Sbjct: 181 KITELD--VSQNKLLNRLNCDTN-NITKL---DLNQNIQLTFLDCSS 221

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 11/119 (9%)

Query: 241 TENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGD 300
           T++ +   PD  F         ++      +   S   L  L +L   N  + D+  I  
Sbjct: 8   TQSFNDWFPDDNFASEVAAA-FEMQA----TDTISEEQLATLTSLDCHNSSITDMTGIEK 62

Query: 301 LKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
           L  L  L    ++I  L   + Q T L  L   +  KL  +    ++ LT+L  L    
Sbjct: 63  LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNL---DVTPLTKLTYLNCDT 115

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEI 306
            I +       +L  L L       L   +     L++LS  N  + D + +G +  L  
Sbjct: 308 GITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNN 365

Query: 307 LSLKHSSIEQLPREIGQLTCLKLLDLSN 334
                     +P+E      L +    +
Sbjct: 366 NFEAEGQTITMPKETLTNNSLTIAVSPD 393

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 7/122 (5%)

Query: 229 LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLE 288
           L      ++        ++  D      T+L +LD        L   L     L  L L 
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLN 326

Query: 289 NCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISN 348
           N  + ++  +    KL+ LS  ++ I+     +G++  L     +   +   +    ++N
Sbjct: 327 NTELTELD-VSHNTKLKSLSCVNAHIQDFS-SVGKIPALNNNFEAE-GQTITMPKETLTN 383

Query: 349 LT 350
            +
Sbjct: 384 NS 385

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 11/129 (8%)

Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSLE-NCL- 291
           TE L LQ      + D  F G+T+L  L+L   +  +L + +   L  L TL L  N L 
Sbjct: 37  TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96

Query: 292 VVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
            + + +   L +L+ L L  + ++ LP  +  +LT LK L L+  ++L+ I       LT
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLT 155

Query: 351 RLEELYMGN 359
            L+ L +  
Sbjct: 156 NLQTLSLST 164

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 7/128 (5%)

Query: 242 ENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDL 301
             + L++ +     + EL VLD +      L         L  LS  N  +  +A +  L
Sbjct: 5   RRIHLELRNRTPSDVKEL-VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKL 63

Query: 302 KKLEILSLKHSSIEQLPREIGQ-LTCLKLLDLSNC--SKLKEIRPNVISNLTRLEELY-M 357
            KL+ L L  + +      + +    L  L+LS      L  I P  +  L  L+ L   
Sbjct: 64  NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP--LKKLENLKSLDLF 121

Query: 358 GNSFTQWK 365
               T   
Sbjct: 122 NCEVTNLN 129

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 33/184 (17%), Positives = 67/184 (36%), Gaps = 33/184 (17%)

Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL--VVDV 295
           L    N   +I +  F  + +L+ L ++      +P +L    +L  L + +     V  
Sbjct: 83  LVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPK 140

Query: 296 AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKL--LDLSNCS----------------- 336
            +   L+ +  + +  + +E    E G    LKL  L +S                    
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHL 200

Query: 337 ---KLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLS----RLTTLEV 388
              K++ I    +   ++L  L +  N      +E  S + L  L++L     +L+ +  
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIR--MIENGSLSFLPTLRELHLDNNKLSRVPA 258

Query: 389 HIPD 392
            +PD
Sbjct: 259 GLPD 262

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 16/113 (14%)

Query: 248 IPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEIL 307
           I +     +  LR L L   +   +P+ L  L  L+ + L                  I 
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN--------------NIT 277

Query: 308 SLKHSSIEQLPREIGQLTCLKLLDLS-NCSKLKEIRPNVISNLTRLEELYMGN 359
            +  +    +   + +      + L  N     E++P     +T    +  GN
Sbjct: 278 KVGVNDFCPVGFGV-KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 52/397 (13%), Positives = 112/397 (28%), Gaps = 60/397 (15%)

Query: 215 ISIPFRGIYELPERLGFLK-LKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP 273
                + ++EL +    L+ L  ++     +S +  +        L  + +  F    L 
Sbjct: 177 SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV 236

Query: 274 SSLGCLINLRTLSLENC-----LVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLK 328
                  NL      +      +      +   +KL  L L +    ++P        ++
Sbjct: 237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296

Query: 329 LLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGEL-KQLSRLTTLE 387
            LDL       E    +I     LE L   N           +  L  L +   +L  L 
Sbjct: 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG--------DRGLEVLAQYCKQLKRLR 348

Query: 388 VHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLG-YGMKMLL 446
           +          D   +E E   +    + + + G +  + + + +++ T      +   L
Sbjct: 349 IE------RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402

Query: 447 KRTEDLHLDELAGFKNVVHELDDE------EGFARLRHLHVHNGPE------ILHILNSD 494
           K   D  L  L   + +     D        G  +LR    +          + +I    
Sbjct: 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY- 461

Query: 495 GRVGTFPLLESLFLHN-------LINLEKVCDGKVRLNEDD------------KSFSNLR 535
                 P +  + L         L+   + C    +L                    +LR
Sbjct: 462 -----SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516

Query: 536 IIKVEGCH-RVKHLFPFSLVKNLLQLQKVKVTDCTNL 571
            + V+G    +       + +    ++ +       +
Sbjct: 517 YLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV 553

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 39/250 (15%), Positives = 79/250 (31%), Gaps = 36/250 (14%)

Query: 15  LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAV 74
           L  E+   +    V    KK D       I+ +C G P+ +  I   L++   R W   +
Sbjct: 286 LGREKGLEILSLFVNM--KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNR-WAYYL 342

Query: 75  NQLSNSNPRKIQGMDAD-----LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLL 129
            QL N   ++I+   +        ++ +S E L+ +++K  +    +L+   ++    L 
Sbjct: 343 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLC 401

Query: 130 RYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAE 189
                          +     V  ++    + SLLF   +         +H + V    E
Sbjct: 402 VL------------WDLETEEVEDILQEFVNKSLLFCNRNGKSF--CYYLHDLQVDFLTE 447

Query: 190 KLLFNIQ-----NVADLKEELDKIDEAPTAISIPFRGIYELPERLG-------FLKLKLF 237
           K    +Q      V   +        +P      +     L   +           L   
Sbjct: 448 KNRSQLQDLHRKMVTQFQRYYQPHTLSPDQEDCMYW-YNFLAYHMASANMHKELCALMFS 506

Query: 238 LFFTENLSLQ 247
           L + +  +  
Sbjct: 507 LDWIKAKTEL 516

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 22/116 (18%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 248 IPDPFFE--GMTELRVLDLTGFRFHSLPSSLGC--LINLRTLSLENCLVVDVAIIGDLKK 303
                     M+ L  LD++    +S      C    ++  L+L + ++          K
Sbjct: 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK 451

Query: 304 LEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
           +++L L ++ I  +P+++  L  L+ L++++ ++LK +   V   LT L+ +++ +
Sbjct: 452 VKVLDLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 62/394 (15%), Positives = 115/394 (29%), Gaps = 58/394 (14%)

Query: 253 FEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSL-ENCLVVDVAI-IGDLKKLEILSL 309
              ++ELRVL L+  R  SL   +     +L  L +  N L     I    +  L  L L
Sbjct: 72  ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL---QNISCCPMASLRHLDL 128

Query: 310 KHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367
             +  + LP   E G LT L  L LS  +K +++       +  L    +      + ++
Sbjct: 129 SFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQLDLL---PVAHLHLSCILLDLVSYHIK 184

Query: 368 GQSNASLGELK------QLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDG 421
           G    SL               +   V +  +      L    ++        + ++   
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244

Query: 422 YET-SKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLH 480
                  L + L +          L +      ++ L  +   + E  D E F      +
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT-----Y 299

Query: 481 VHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVE 540
                + L I +   +V  F              E +      +N    S S+   I + 
Sbjct: 300 SETALKSLMIEHVKNQVFLFS------------KEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 541 ---GCHRVKHLFPFSLVKNLLQLQKVKVTDC-TNLKLIVGKESENSAHKNG--SISGVYF 594
                     L   +  +N+      +       L+ +          +NG  +   V  
Sbjct: 348 CPPSPSSFTFL---NFTQNVFTDSVFQGCSTLKRLQTL-------ILQRNGLKNFFKVAL 397

Query: 595 RKLHFLKLQHLP----QLTSSGFDLET--PTNTQ 622
              +   L+ L      L S  +D       +  
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 25/141 (17%)

Query: 222 IYELPERLGFLKLKL--FLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL 279
              L     F KL     + F+ N    I +  FEG + +  + LT  R  ++       
Sbjct: 44  FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHK---- 99

Query: 280 INLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKL 338
                            +   L+ L+ L L+ + I  +  +    L+ ++LL L +  ++
Sbjct: 100 -----------------MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QI 141

Query: 339 KEIRPNVISNLTRLEELYMGN 359
             + P     L  L  L +  
Sbjct: 142 TTVAPGAFDTLHSLSTLNLLA 162

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 20/133 (15%)

Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSL-ENCL- 291
            + L L       +    F+ +  L+ L L   +  +LP  +   L  L  L L  N L 
Sbjct: 42  AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 292 -----VVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVI 346
                V D      L  L+ L +  + + +LPR I +LT L  L L   ++LK I     
Sbjct: 102 VLPSAVFD-----RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAF 155

Query: 347 SNLTRLEELYMGN 359
             L+ L   Y+  
Sbjct: 156 DRLSSLTHAYLFG 168

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSLE-NCL-VVDVAIIGDLKKLEIL 307
              + +T L  L LTG +  SLP+ +   L NL+ L L  N L  +   +   L  L  L
Sbjct: 79  SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138

Query: 308 SLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
           +L H+ ++ LP+ +  +LT L  LDL + ++L+ +   V   LT+L++L +  
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDL-SYNQLQSLPEGVFDKLTQLKDLRLYQ 190

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 34/142 (23%), Positives = 52/142 (36%), Gaps = 14/142 (9%)

Query: 224 ELPERLGFLKLKL-FLFFTENLSLQIPDPFFEGMTELRVLDLTGFRF---HSLPSSL--G 277
            L E   +LK  L  L   +  SL            L  LDL+         L S+L   
Sbjct: 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198

Query: 278 CLINLRTLSLENCL-----VVDVAIIGDLKKLEILSLKHSSIEQLPREIGQ--LTCLKLL 330
               L+ L+L N        V  A+     +L+ L L H+S+            + L  L
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258

Query: 331 DLSNCSKLKEIRPNVISNLTRL 352
           +LS    LK++   + + L+ L
Sbjct: 259 NLSFT-GLKQVPKGLPAKLSVL 279

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 21/151 (13%)

Query: 252 FFEGMTELRVLDLTGFRF---HSLPSSLGCLINLRTLSLENCLVVDV------AIIGDLK 302
             +     +VL L+         L +      NL+ L L    V DV             
Sbjct: 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184

Query: 303 KLEILSLK-------HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355
            L  L++         S++E+L     +   LK L L+    L+++   ++    +LEEL
Sbjct: 185 SLVSLNISCLASEVSFSALERLVT---RCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEEL 240

Query: 356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTL 386
             G  +T        +     L     L  L
Sbjct: 241 GTG-GYTAEVRPDVYSGLSVALSGCKELRCL 270

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 259 LRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSI- 314
           +              +       ++ + L N ++       I+    KL+ LSL+   + 
Sbjct: 72  VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS 131

Query: 315 EQLPREIGQLTCLKLLDLSNCSKLKEIRPNVI-SNLTRLEELYMGN 359
           + +   + + + L  L+LS CS   E     + S+ +RL+EL +  
Sbjct: 132 DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 305 EILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG-NSFTQ 363
             L L  +    +P+E+     L L+DLSN +++  +     SN+T+L  L +  N    
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYNRLR- 91

Query: 364 WKVEGQSNASL--GELKQLSRLTTLEVHIPDAQVMPQ 398
                     +       L  L  L +H  D  V+P+
Sbjct: 92  ---------CIPPRTFDGLKSLRLLSLHGNDISVVPE 119

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 8e-04
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 241 TENLSLQIPDPFFEGMTELRVLDLTGFR-FHSLPS-SLGCLINLRTLSLENCLVVDVA-- 296
           T + +L        G   L  L +   +    L    L  L  LR L++    +  VA  
Sbjct: 16  TRDGALDSL-HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 297 IIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSN 334
                 +L  L+L  +++E L  +  Q   L+ L LS 
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	679
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.98
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.98
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.98
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.98
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.98
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.98
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.92
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.87
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.84
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.83
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.83
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.83
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.82
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.82
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.79
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.79
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.79
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.78
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.76
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.76
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.76
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.75
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.75
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.74
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.73
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.71
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.69
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.68
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.68
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.67
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.66
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.65
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.64
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.63
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.61
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.6
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.59
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.59
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.59
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.59
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.59
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.59
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.58
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.58
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.57
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.56
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.54
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.53
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.47
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.45
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.44
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.4
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.38
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.37
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.36
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.35
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.33
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.26
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.25
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.25
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.21
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.16
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.15
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.15
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.94
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.88
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.85
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.84
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.82
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.77
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.66
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.58
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.51
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.31
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.16
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.16
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.96
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.91
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.8
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.76
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.33
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.25
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.53
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.31
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.74
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.26
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	92.08
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	91.88
2fna_A	357	Conserved hypothetical protein; structural genomic	90.21

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.1e-33  Score=310.86  Aligned_cols=357  Identities=16%  Similarity=0.134  Sum_probs=230.8

Q ss_pred             ecccchhhhhhhhcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-
Q 005744          196 QNVADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-  272 (679)
Q Consensus       196 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-  272 (679)
                      ..+..+..+|...+..+++|++++|.+..+++ .+ .+++|++|++++|.+.+..|.. |.++++|++|++++|.++.+ 
T Consensus        19 c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~   97 (606)
T 3t6q_A           19 CENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT-FQSQHRLDTLVLTANPLIFMA   97 (606)
T ss_dssp             CTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCSEEC
T ss_pred             CCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhh-ccCccccCeeeCCCCcccccC
Confidence            34556677777778899999999999988754 44 8999999999999987554554 58999999999999999876 


Q ss_pred             CccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccc-hhhhcCCCCCEEcccCCccccccCcccccCC
Q 005744          273 PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNL  349 (679)
Q Consensus       273 p~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l  349 (679)
                      |..++++++|++|++++|.+..  +..++++++|++|++++|.++.++ ..+..+++|++|++++ +.++.+++..++.+
T Consensus        98 ~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l  176 (606)
T 3t6q_A           98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSL  176 (606)
T ss_dssp             TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTT
T ss_pred             hhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhh
Confidence            7789999999999999999988  688999999999999999999763 3355599999999999 67778877768899


Q ss_pred             CCCc--EEEccCCcccceeccCCcC---------------------------------------------ChhhhhcCCC
Q 005744          350 TRLE--ELYMGNSFTQWKVEGQSNA---------------------------------------------SLGELKQLSR  382 (679)
Q Consensus       350 ~~L~--~L~l~~~~~~~~~~~~~~~---------------------------------------------~~~~l~~l~~  382 (679)
                      ++|+  .|++++|.+....++....                                             .+..+..+ +
T Consensus       177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~-~  255 (606)
T 3t6q_A          177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-S  255 (606)
T ss_dssp             TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS-E
T ss_pred             cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC-c
Confidence            9999  8899888765433221000                                             00011111 4


Q ss_pred             CceEEeecCCCccCCccc--cccccceeEEEeCC---cccCCCCCCCcceEEecCCCcceech-hHHHHhhccccccccc
Q 005744          383 LTTLEVHIPDAQVMPQDL--VFVELERFRICIGD---VWSWSDGYETSKTLKLQLNNSTYLGY-GMKMLLKRTEDLHLDE  456 (679)
Q Consensus       383 L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~---~~~~~~~~~~l~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~  456 (679)
                      |+.|++++|.+..++...  .+++|+.|++..+.   .+..+..+++|+.|+++++.....+. .+.. +++|+.|++++
T Consensus       256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~  334 (606)
T 3t6q_A          256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASN-FPSLTHLSIKG  334 (606)
T ss_dssp             EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG-CTTCSEEECCS
T ss_pred             eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhc-cCcCCEEECCC
Confidence            556666666665555542  55666666665443   22344555666666666665554432 2332 56666666666


Q ss_pred             ccCccccccc-ccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCcc
Q 005744          457 LAGFKNVVHE-LDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLR  535 (679)
Q Consensus       457 ~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~  535 (679)
                      |.....++.. +   ..+++|++|++++|.. ..+.........+++|++|++++ +.+..+....      ...+++|+
T Consensus       335 n~~~~~~~~~~~---~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~------~~~l~~L~  403 (606)
T 3t6q_A          335 NTKRLELGTGCL---ENLENLRELDLSHDDI-ETSDCCNLQLRNLSHLQSLNLSY-NEPLSLKTEA------FKECPQLE  403 (606)
T ss_dssp             CSSCCBCCSSTT---TTCTTCCEEECCSSCC-CEEEESTTTTTTCTTCCEEECCS-CSCEEECTTT------TTTCTTCS
T ss_pred             CCcccccchhhh---hccCcCCEEECCCCcc-ccccCcchhcccCCCCCEEECCC-CcCCcCCHHH------hcCCccCC
Confidence            6544344332 3   5566666666666642 22221122334566666666665 3333332222      22445555


Q ss_pred             EEEEecCCCccccccHHHHHHhhcCcEEEEccc
Q 005744          536 IIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDC  568 (679)
Q Consensus       536 ~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c  568 (679)
                      .|++++| +++...+...+..+++|++|++++|
T Consensus       404 ~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n  435 (606)
T 3t6q_A          404 LLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHS  435 (606)
T ss_dssp             EEECTTC-CEECCTTCCTTTTCTTCCEEECTTC
T ss_pred             eEECCCC-cCCCcccchhhhCcccCCEEECCCC
Confidence            5555553 3333322222344555555555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=8.7e-33  Score=308.95  Aligned_cols=434  Identities=18%  Similarity=0.138  Sum_probs=281.7

Q ss_pred             ecccchhhhhhhhcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-
Q 005744          196 QNVADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-  272 (679)
Q Consensus       196 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-  272 (679)
                      ..+..++.+|...+.++++|++++|.+..++. .+ ++++|++|++++|.+.+ +++..|.++++|++|++++|.++.+ 
T Consensus        18 c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~   96 (606)
T 3vq2_A           18 CMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFS   96 (606)
T ss_dssp             CTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCCCC
T ss_pred             ccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCCCcccccC
Confidence            44566777787778999999999999988776 34 89999999999999874 4444569999999999999999987 


Q ss_pred             CccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCC--ccchhhhcCCCCCEEcccCCccccccCcccccC
Q 005744          273 PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISN  348 (679)
Q Consensus       273 p~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~  348 (679)
                      |..|+++++|++|++++|.+..  +..++++++|++|++++|.++  .+|..++++++|++|++++ +.++.+++..++.
T Consensus        97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~  175 (606)
T 3vq2_A           97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY-NYIQTITVNDLQF  175 (606)
T ss_dssp             TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS-SCCCEECTTTTHH
T ss_pred             hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC-CcceecChhhhhh
Confidence            8889999999999999999988  478999999999999999988  5799999999999999999 5667666555655


Q ss_pred             CCCCc----EEEccCCcccceeccCC------------------------------------------------------
Q 005744          349 LTRLE----ELYMGNSFTQWKVEGQS------------------------------------------------------  370 (679)
Q Consensus       349 l~~L~----~L~l~~~~~~~~~~~~~------------------------------------------------------  370 (679)
                      +++|+    +|++++|.+.....+..                                                      
T Consensus       176 l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~  255 (606)
T 3vq2_A          176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM  255 (606)
T ss_dssp             HHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred             hhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh
Confidence            55444    56666665442211000                                                      


Q ss_pred             -------------------cCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCccc--CCCCCCCcceEE
Q 005744          371 -------------------NASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWS--WSDGYETSKTLK  429 (679)
Q Consensus       371 -------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~l~~L~  429 (679)
                                         ...+..+..+++|+.|+++++.+..++....+++|+.|++..+....  .+ .+++|+.|+
T Consensus       256 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~  334 (606)
T 3vq2_A          256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLT  334 (606)
T ss_dssp             TTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEE
T ss_pred             hhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccC-CCCccceee
Confidence                               00011133344555555555555555421244555555555444211  11 445555555


Q ss_pred             ecCCCcceechhHHHHhhcccccccccccCccc--ccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceee
Q 005744          430 LQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKN--VVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLF  507 (679)
Q Consensus       430 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~  507 (679)
                      ++++...... .+. .+++|+.|++++|.....  .+..+   ..+++|++|++++|. +..++   .....+++|++|+
T Consensus       335 l~~n~~~~~~-~~~-~l~~L~~L~ls~n~l~~~~~~~~~~---~~~~~L~~L~L~~n~-l~~~~---~~~~~l~~L~~L~  405 (606)
T 3vq2_A          335 LTMNKGSISF-KKV-ALPSLSYLDLSRNALSFSGCCSYSD---LGTNSLRHLDLSFNG-AIIMS---ANFMGLEELQHLD  405 (606)
T ss_dssp             EESCSSCEEC-CCC-CCTTCCEEECCSSCEEEEEECCHHH---HCCSCCCEEECCSCS-EEEEC---CCCTTCTTCCEEE
T ss_pred             ccCCcCccch-hhc-cCCCCCEEECcCCccCCCcchhhhh---ccCCcccEeECCCCc-cccch---hhccCCCCCCeeE
Confidence            5554322211 111 245566666665543221  13333   456666666666664 33332   2334566777777


Q ss_pred             ccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCC
Q 005744          508 LHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNG  587 (679)
Q Consensus       508 l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~  587 (679)
                      ++++ .+......     .....+++|+.|++++|. ++...+ ..+..+++|++|++++|.--..++.           
T Consensus       406 l~~n-~l~~~~~~-----~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~-----------  466 (606)
T 3vq2_A          406 FQHS-TLKRVTEF-----SAFLSLEKLLYLDISYTN-TKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLS-----------  466 (606)
T ss_dssp             CTTS-EEESTTTT-----TTTTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCEEGGGEEC-----------
T ss_pred             CCCC-ccCCccCh-----hhhhccccCCEEECcCCC-CCccch-hhhcCCCCCCEEECCCCcCCCcchH-----------
Confidence            7663 34333210     113466777777777753 444323 2346677777777777732221111           


Q ss_pred             ccccccccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccccccCC
Q 005744          588 SISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLN  666 (679)
Q Consensus       588 ~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~  666 (679)
                       ..+..+++|++|++++| +++.++..    .+..++.++.+....+.-....+.....+++|+.|++++|+++.+|..
T Consensus       467 -~~~~~l~~L~~L~Ls~n-~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~  539 (606)
T 3vq2_A          467 -NVFANTTNLTFLDLSKC-QLEQISWG----VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI  539 (606)
T ss_dssp             -SCCTTCTTCCEEECTTS-CCCEECTT----TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred             -HhhccCCCCCEEECCCC-cCCccChh----hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence             14568899999999987 45554332    134567788888877754443355556789999999999999999987

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.9e-32  Score=299.53  Aligned_cols=427  Identities=18%  Similarity=0.171  Sum_probs=273.4

Q ss_pred             ecccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC
Q 005744          196 QNVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP  273 (679)
Q Consensus       196 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp  273 (679)
                      +.+..+..+|...+.++++|++++|.+..++.. + .+++|++|++++|.+. .++...|.++++|++|++++|.++.+|
T Consensus        14 c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~   92 (570)
T 2z63_A           14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLA   92 (570)
T ss_dssp             CCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             eCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccC
Confidence            344566777776778999999999999887653 3 8999999999999877 455556799999999999999999875


Q ss_pred             -ccccCCcCCCEEEcCCcccCC-c-ccccCCCCCcEEEecCCCCCc--cchhhhcCCCCCEEcccCCccccccCcccccC
Q 005744          274 -SSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISN  348 (679)
Q Consensus       274 -~~i~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~  348 (679)
                       ..++++++|++|++++|.+.. + ..++++++|++|++++|.++.  +|..++++++|++|++++ +.++.+++..++.
T Consensus        93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~  171 (570)
T 2z63_A           93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRV  171 (570)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT-SCCCEECGGGGHH
T ss_pred             HhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC-CccceecHHHccc
Confidence             789999999999999999988 4 369999999999999999885  789999999999999999 5677777666777


Q ss_pred             CCCC----cEEEccCCcccceeccCC------------------------------------------------------
Q 005744          349 LTRL----EELYMGNSFTQWKVEGQS------------------------------------------------------  370 (679)
Q Consensus       349 l~~L----~~L~l~~~~~~~~~~~~~------------------------------------------------------  370 (679)
                      +++|    +.|++++|.+....++..                                                      
T Consensus       172 l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~  251 (570)
T 2z63_A          172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL  251 (570)
T ss_dssp             HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT
T ss_pred             hhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhh
Confidence            7777    788888876543221100                                                      


Q ss_pred             --------------------cCChhhhhcCCCCceEEeecCCCccCCccc-cccccceeEEEeCCccc-CCCCCCCcceE
Q 005744          371 --------------------NASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWS-WSDGYETSKTL  428 (679)
Q Consensus       371 --------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~-~~~~~~~l~~L  428 (679)
                                          ......+..+++|+.|+++++.+..+|..+ .+ +|+.|++..+.... ....+++++.+
T Consensus       252 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L  330 (570)
T 2z63_A          252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRL  330 (570)
T ss_dssp             GGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEE
T ss_pred             ccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEE
Confidence                                001122334455566666655555555554 33 66666665444321 11234556666


Q ss_pred             EecCCCcceechhHHHHhhcccccccccccCcccc--cccccchhhccccceEeeecCCCeeEEEeCCCcccccccccee
Q 005744          429 KLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNV--VHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESL  506 (679)
Q Consensus       429 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L  506 (679)
                      .+.++........  ..+++|+.|++++|......  +..+   ..+++|++|++++|. +..++..   ...+++|++|
T Consensus       331 ~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~~~L~~L~l~~n~-l~~~~~~---~~~l~~L~~L  401 (570)
T 2z63_A          331 TFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSD---FGTTSLKYLDLSFNG-VITMSSN---FLGLEQLEHL  401 (570)
T ss_dssp             EEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHH---HTCSCCCEEECCSCS-EEEEEEE---EETCTTCCEE
T ss_pred             eCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccc---cccCccCEEECCCCc-ccccccc---ccccCCCCEE
Confidence            6665443322211  12566666666666533221  2333   556777777777664 3333221   3466777777


Q ss_pred             eccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccch-hhhccccccccCC
Q 005744          507 FLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLK-LIVGKESENSAHK  585 (679)
Q Consensus       507 ~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~-~l~~~~~~~~~~~  585 (679)
                      ++.+ +.+......     .....+++|+.|++++| .+...++ ..+..+++|++|++++|.-.. .++.         
T Consensus       402 ~l~~-n~l~~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~---------  464 (570)
T 2z63_A          402 DFQH-SNLKQMSEF-----SVFLSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPD---------  464 (570)
T ss_dssp             ECTT-SEEESCTTS-----CTTTTCTTCCEEECTTS-CCEECCT-TTTTTCTTCCEEECTTCEEGGGEECS---------
T ss_pred             EccC-Cccccccch-----hhhhcCCCCCEEeCcCC-cccccch-hhhhcCCcCcEEECcCCcCccccchh---------
Confidence            7776 334333210     11346677777777775 3444322 234567777777777774221 2221         


Q ss_pred             CCccccccccccceeeccCCCCcccc-ccCCCCCcccCCCCCccccCCCCCCCccCccc-cccCCCcceeecccccccc
Q 005744          586 NGSISGVYFRKLHFLKLQHLPQLTSS-GFDLETPTNTQGSNPGIIAEGDPKDFTSLFNE-RVVFPSLKKLKLSSINVEK  662 (679)
Q Consensus       586 ~~~~~l~~l~~L~~L~l~~cp~L~~l-~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~-~~~~p~L~~L~l~~~~l~~  662 (679)
                          .+..+++|++|++++| +++.+ +..     +..+++++.+...++. +..++.. ...+++|+.|++++|.++.
T Consensus       465 ----~~~~l~~L~~L~l~~n-~l~~~~~~~-----~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          465 ----IFTELRNLTFLDLSQC-QLEQLSPTA-----FNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             ----CCTTCTTCCEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ----hhhcccCCCEEECCCC-ccccCChhh-----hhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCcccC
Confidence                3556777777877776 34443 222     2344556666665543 3333332 3456777777777775543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.98  E-value=6.5e-31  Score=293.79  Aligned_cols=415  Identities=14%  Similarity=0.075  Sum_probs=261.6

Q ss_pred             CeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCc
Q 005744          212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC  290 (679)
Q Consensus       212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~  290 (679)
                      -++++.+++.+..+|..+. +++++|++++|.+.+ ++...|.++++|++|++++|.++.+ |..|+++++|++|++++|
T Consensus        13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n   90 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN   90 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSC-TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CCceEccCCCcccCCCCCC-CCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence            4578999999999998664 899999999999874 5554569999999999999999987 678999999999999999


Q ss_pred             ccCC--cccccCCCCCcEEEecCCCCCccc-hhhhcCCCCCEEcccCCccccc--cCcccccCCCCCcEEEccCCcccce
Q 005744          291 LVVD--VAIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWK  365 (679)
Q Consensus       291 ~~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~~~~  365 (679)
                      .+..  |..|+++++|++|++++|.++.+| ..++++++|++|++++| .+..  +|.. ++++++|++|++++|.+...
T Consensus        91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred             cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCcceec
Confidence            9988  788999999999999999999887 67999999999999994 5554  5665 99999999999999987643


Q ss_pred             eccCCcCChhhhhcCCC-CceEEeecCCCccCCccc-cccccceeEEEeCCcc---------------------------
Q 005744          366 VEGQSNASLGELKQLSR-LTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVW---------------------------  416 (679)
Q Consensus       366 ~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~---------------------------  416 (679)
                      ..    ..+..+.+++. +..|++++|.+..++... ...+|+.|++..+...                           
T Consensus       169 ~~----~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~  244 (606)
T 3vq2_A          169 TV----NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE  244 (606)
T ss_dssp             CT----TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred             Ch----hhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence            32    34455555544 456666666665555443 2234555555433210                           


Q ss_pred             --------------------------------------------------------cCCCCCCCcceEEecCCCcceech
Q 005744          417 --------------------------------------------------------SWSDGYETSKTLKLQLNNSTYLGY  440 (679)
Q Consensus       417 --------------------------------------------------------~~~~~~~~l~~L~L~~~~~~~~~~  440 (679)
                                                                              ..+..+++++.|+++++....+|.
T Consensus       245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~  324 (606)
T 3vq2_A          245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPT  324 (606)
T ss_dssp             CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCC
T ss_pred             CcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCccccc
Confidence                                                                    012223334444444433333332


Q ss_pred             hHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccC
Q 005744          441 GMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDG  520 (679)
Q Consensus       441 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~  520 (679)
                      .   .+++|+.|++++|......  .+   ..+++|++|++++|. +..+.........+++|++|+++++ .+..++. 
T Consensus       325 ~---~l~~L~~L~l~~n~~~~~~--~~---~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~-  393 (606)
T 3vq2_A          325 L---DLPFLKSLTLTMNKGSISF--KK---VALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSA-  393 (606)
T ss_dssp             C---CCSSCCEEEEESCSSCEEC--CC---CCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSC-SEEEECC-
T ss_pred             C---CCCccceeeccCCcCccch--hh---ccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCC-ccccchh-
Confidence            2   1344444444444322222  11   344555555555442 2222111122234555555555552 3443331 


Q ss_pred             cccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCcccccccccccee
Q 005744          521 KVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFL  600 (679)
Q Consensus       521 ~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L  600 (679)
                            ....+++|+.|++++| ++...++...+..+++|++|++++|.-....+.             .+..+++|++|
T Consensus       394 ------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------~~~~l~~L~~L  453 (606)
T 3vq2_A          394 ------NFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG-------------IFLGLTSLNTL  453 (606)
T ss_dssp             ------CCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSCCEECCTT-------------TTTTCTTCCEE
T ss_pred             ------hccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCCCCccchh-------------hhcCCCCCCEE
Confidence                  1335566666666664 344443323345566666666666642222211             34567788888


Q ss_pred             eccCCCCccc--cccCCCCCcccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccccccCCCcccc
Q 005744          601 KLQHLPQLTS--SGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAI  671 (679)
Q Consensus       601 ~l~~cp~L~~--l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~~~~~~  671 (679)
                      ++++|. +..  ++..     +..++.++.+...++.-....+.....+++|+.|++++|+++.+.+..+...
T Consensus       454 ~l~~n~-l~~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  520 (606)
T 3vq2_A          454 KMAGNS-FKDNTLSNV-----FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL  520 (606)
T ss_dssp             ECTTCE-EGGGEECSC-----CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC
T ss_pred             ECCCCc-CCCcchHHh-----hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC
Confidence            887763 332  2222     2455667777777765443333445567889999999998888866665543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.98  E-value=7.2e-31  Score=303.32  Aligned_cols=361  Identities=18%  Similarity=0.196  Sum_probs=221.3

Q ss_pred             EecccchhhhhhhhcCCCeEEEccCCCcccCC-ccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC
Q 005744          195 IQNVADLKEELDKIDEAPTAISIPFRGIYELP-ERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL  272 (679)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l  272 (679)
                      -+....++.+|. .+.++++|++++|.+..++ ..+ .+++|++|++++|...+.+++..|.++++|++|++++|.++.+
T Consensus        10 dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~   88 (844)
T 3j0a_A           10 FYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL   88 (844)
T ss_dssp             EESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred             EccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc
Confidence            345566777787 7899999999999997764 444 8999999999999877788666679999999999999999976


Q ss_pred             -CccccCCcCCCEEEcCCcccCC--ccc--ccCCCCCcEEEecCCCCCccc--hhhhcCCCCCEEcccCCccccccCccc
Q 005744          273 -PSSLGCLINLRTLSLENCLVVD--VAI--IGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEIRPNV  345 (679)
Q Consensus       273 -p~~i~~l~~L~~L~L~~~~~~~--~~~--i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~~  345 (679)
                       |..++++++|++|++++|.+..  +..  ++++++|++|++++|.++.++  ..++++++|++|++++ +.++.+.+..
T Consensus        89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~-N~i~~~~~~~  167 (844)
T 3j0a_A           89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCEHE  167 (844)
T ss_dssp             CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES-SCCCCCCSGG
T ss_pred             CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC-CcCCeeCHHH
Confidence             8899999999999999999986  544  999999999999999998663  5799999999999999 5566555444


Q ss_pred             ccCC--CCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCcc-CCccc----------------------
Q 005744          346 ISNL--TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV-MPQDL----------------------  400 (679)
Q Consensus       346 l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~----------------------  400 (679)
                      ++.+  ++|+.|++++|.+....+.........+.+. .|+.|++++|.+.. .+..+                      
T Consensus       168 l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~  246 (844)
T 3j0a_A          168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG  246 (844)
T ss_dssp             GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC-CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred             cccccCCccceEECCCCccccccccchhhcCCccccC-ceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence            6666  6777777777765432211000000011111 35555555543211 00000                      


Q ss_pred             -----------------cccccceeEEEeCCc----ccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccC
Q 005744          401 -----------------VFVELERFRICIGDV----WSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAG  459 (679)
Q Consensus       401 -----------------~~~~L~~L~l~~~~~----~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  459 (679)
                                       ..++|+.|++..+..    ...+..+++|+.|+|+++.....+......+++|+.|++++|..
T Consensus       247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l  326 (844)
T 3j0a_A          247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL  326 (844)
T ss_dssp             SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred             ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence                             113455555543332    12344555666666666555544332222355666666666554


Q ss_pred             cccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCccc-----------CCCCc
Q 005744          460 FKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVR-----------LNEDD  528 (679)
Q Consensus       460 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~-----------~~~~~  528 (679)
                      ....+..+   ..+++|++|++++|. +..++.  ..+..+++|++|++++ +.++.++.  ++           ...-.
T Consensus       327 ~~~~~~~~---~~l~~L~~L~L~~N~-i~~~~~--~~~~~l~~L~~L~Ls~-N~l~~i~~--~~~L~~L~l~~N~l~~l~  397 (844)
T 3j0a_A          327 GELYSSNF---YGLPKVAYIDLQKNH-IAIIQD--QTFKFLEKLQTLDLRD-NALTTIHF--IPSIPDIFLSGNKLVTLP  397 (844)
T ss_dssp             SCCCSCSC---SSCTTCCEEECCSCC-CCCCCS--SCSCSCCCCCEEEEET-CCSCCCSS--CCSCSEEEEESCCCCCCC
T ss_pred             CccCHHHh---cCCCCCCEEECCCCC-CCccCh--hhhcCCCCCCEEECCC-CCCCcccC--CCCcchhccCCCCccccc
Confidence            33334444   456666666666553 222211  1223455566666655 33332210  00           00000


Q ss_pred             cccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEccc
Q 005744          529 KSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDC  568 (679)
Q Consensus       529 ~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c  568 (679)
                      ....+++.|++++ ++++.++....+..+++|++|++++|
T Consensus       398 ~~~~~l~~L~ls~-N~l~~l~~~~~~~~l~~L~~L~Ls~N  436 (844)
T 3j0a_A          398 KINLTANLIHLSE-NRLENLDILYFLLRVPHLQILILNQN  436 (844)
T ss_dssp             CCCTTCCEEECCS-CCCCSSTTHHHHTTCTTCCEEEEESC
T ss_pred             ccccccceeeccc-CccccCchhhhhhcCCccceeeCCCC
Confidence            1123344444444 24444433334456777777777776

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.98  E-value=3e-31  Score=303.33  Aligned_cols=429  Identities=17%  Similarity=0.121  Sum_probs=209.4

Q ss_pred             CCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCC-cCCccccCCcCCCEEEcC
Q 005744          210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLRTLSLE  288 (679)
Q Consensus       210 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~L~  288 (679)
                      +++++|++++|.+........+++|++|++++|.+.+.+|.  ++++++|++|++++|.++ .+|..++++++|++|+++
T Consensus       178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  255 (768)
T 3rgz_A          178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS  255 (768)
T ss_dssp             TTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred             CCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence            34444444444443322223444555555555554443433  344555555555555544 234445555555555555


Q ss_pred             CcccCC-cccccCCCCCcEEEecCCCCC-ccchhhhcC-CCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccce
Q 005744          289 NCLVVD-VAIIGDLKKLEILSLKHSSIE-QLPREIGQL-TCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK  365 (679)
Q Consensus       289 ~~~~~~-~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L-~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~  365 (679)
                      +|.+.. .+.. .+++|++|++++|.++ .+|..+..+ ++|++|++++|...+.+|.. ++++++|++|++++|.+.+.
T Consensus       256 ~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~  333 (768)
T 3rgz_A          256 SNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGE  333 (768)
T ss_dssp             SSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEE
T ss_pred             CCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCc
Confidence            554443 1111 4444444444444444 444444433 45555555542222222222 44555555555555443211


Q ss_pred             eccCCcCChhhhhcCCCCceEEeecCCCc-cCCccc-c---------------------------ccccceeEEEeCC--
Q 005744          366 VEGQSNASLGELKQLSRLTTLEVHIPDAQ-VMPQDL-V---------------------------FVELERFRICIGD--  414 (679)
Q Consensus       366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~---------------------------~~~L~~L~l~~~~--  414 (679)
                      .+      ...+.++++|+.|++++|.+. .+|..+ .                           +++|+.|++..+.  
T Consensus       334 ip------~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  407 (768)
T 3rgz_A          334 LP------MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT  407 (768)
T ss_dssp             CC------HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE
T ss_pred             CC------HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc
Confidence            11      112444455555555544443 333333 2                           3444444443332  


Q ss_pred             --cccCCCCCCCcceEEecCCCcc-eechhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEE
Q 005744          415 --VWSWSDGYETSKTLKLQLNNST-YLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHIL  491 (679)
Q Consensus       415 --~~~~~~~~~~l~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  491 (679)
                        .+..+..+++|+.|+++++... ..|..+.. +++|+.|++++|.....+|..+   ..+++|++|++++|.....++
T Consensus       408 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~p  483 (768)
T 3rgz_A          408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQEL---MYVKTLETLILDFNDLTGEIP  483 (768)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCCSCCCGGG---GGCTTCCEEECCSSCCCSCCC
T ss_pred             cccCHHHhcCCCCCEEECcCCcccCcccHHHhc-CCCCCEEECCCCcccCcCCHHH---cCCCCceEEEecCCcccCcCC
Confidence              1223344555555555554433 23333333 4555555555555444455544   455666666666654222211


Q ss_pred             eCCCccccccccceeecccccccc-ccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEccccc
Q 005744          492 NSDGRVGTFPLLESLFLHNLINLE-KVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTN  570 (679)
Q Consensus       492 ~~~~~~~~~~~L~~L~l~~c~~L~-~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~  570 (679)
                         .....+++|++|+++++ .+. .++.       ..+.+++|+.|++++|. +....|. .+..+++|+.|++++|+-
T Consensus       484 ---~~l~~l~~L~~L~L~~N-~l~~~~p~-------~~~~l~~L~~L~L~~N~-l~~~~p~-~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          484 ---SGLSNCTNLNWISLSNN-RLTGEIPK-------WIGRLENLAILKLSNNS-FSGNIPA-ELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             ---GGGGGCTTCCEEECCSS-CCCSCCCG-------GGGGCTTCCEEECCSSC-CEEECCG-GGGGCTTCCEEECCSSEE
T ss_pred             ---HHHhcCCCCCEEEccCC-ccCCcCCh-------HHhcCCCCCEEECCCCc-ccCcCCH-HHcCCCCCCEEECCCCcc
Confidence               22345666666666663 333 2221       14466777777777753 4322232 356677777777777754


Q ss_pred             chhhhcccccccc---------------------------------------------------------CCCCcccccc
Q 005744          571 LKLIVGKESENSA---------------------------------------------------------HKNGSISGVY  593 (679)
Q Consensus       571 L~~l~~~~~~~~~---------------------------------------------------------~~~~~~~l~~  593 (679)
                      ...+|..-.....                                                         .......+..
T Consensus       551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~  630 (768)
T 3rgz_A          551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN  630 (768)
T ss_dssp             ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred             CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence            4344432110000                                                         0000112345


Q ss_pred             ccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccccccCCCccc
Q 005744          594 FRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSA  670 (679)
Q Consensus       594 l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~~~~~  670 (679)
                      +++|+.|+++++.--..+|..     +..+..++.+....+.-...+|.....+++|+.|++++|+++...+..+..
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~-----l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~  702 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKE-----IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA  702 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGG-----GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             cccccEEECcCCcccccCCHH-----HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence            677778888775322234433     345666777777766655567777778888999999999888555554443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.98  E-value=1.8e-31  Score=305.19  Aligned_cols=421  Identities=17%  Similarity=0.066  Sum_probs=220.3

Q ss_pred             hcCCCeEEEccCCCcc-cCCc--cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-Ccc---ccCC
Q 005744          208 IDEAPTAISIPFRGIY-ELPE--RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSS---LGCL  279 (679)
Q Consensus       208 ~~~~l~~l~l~~~~~~-~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~---i~~l  279 (679)
                      ...++++|++++|.+. .+|.  .+ .+++|++|++++|.+.+.+|..++.++++|++|++++|.++.. |..   +.++
T Consensus        98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l  177 (768)
T 3rgz_A           98 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC  177 (768)
T ss_dssp             CCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred             cCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence            3456666666666663 3444  33 5666666666666666555555445666666666666666543 222   4556


Q ss_pred             cCCCEEEcCCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccC
Q 005744          280 INLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN  359 (679)
Q Consensus       280 ~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~  359 (679)
                      ++|++|++++|.+.....++.+++|++|++++|.++..++.++++++|++|++++| .+....+..++++++|++|++++
T Consensus       178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~  256 (768)
T 3rgz_A          178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISS  256 (768)
T ss_dssp             TTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCS
T ss_pred             CCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCC-cCCCcccHHHhcCCCCCEEECCC
Confidence            66666666666555533335566666666666655543333566666666666653 23322222255666666666666


Q ss_pred             CcccceeccCCcCChhhhhcCCCCceEEeecCCCc-cCCccc-c-ccccceeEEEeCC----cccCCC------------
Q 005744          360 SFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ-VMPQDL-V-FVELERFRICIGD----VWSWSD------------  420 (679)
Q Consensus       360 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~-~~~L~~L~l~~~~----~~~~~~------------  420 (679)
                      |.+....+        .. .+++|++|++++|.+. .+|..+ . +++|+.|++..+.    .+..+.            
T Consensus       257 n~l~~~~~--------~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  327 (768)
T 3rgz_A          257 NQFVGPIP--------PL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS  327 (768)
T ss_dssp             SCCEESCC--------CC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred             CcccCccC--------cc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence            54432111        00 3444445555444443 333333 1 2444444443332    122233            


Q ss_pred             -------------CCCCcceEEecCCCcc-eechhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCC
Q 005744          421 -------------GYETSKTLKLQLNNST-YLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPE  486 (679)
Q Consensus       421 -------------~~~~l~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  486 (679)
                                   .+++|+.|+++.+... ..|.++....++|+.|++++|.....+|..+.. ..+++|++|++++|..
T Consensus       328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~-~~~~~L~~L~L~~n~l  406 (768)
T 3rgz_A          328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ-NPKNTLQELYLQNNGF  406 (768)
T ss_dssp             SEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC-STTCCCCEEECCSSEE
T ss_pred             CcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh-cccCCccEEECCCCcc
Confidence                         3444444444444333 334444332124555555544443333333311 1144555555555532


Q ss_pred             eeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEc
Q 005744          487 ILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVT  566 (679)
Q Consensus       487 l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~  566 (679)
                      ...+   ......+++|++|+++++ .+.....      ...+.+++|+.|++++|. +....+. .+..+++|++|+++
T Consensus       407 ~~~~---p~~l~~l~~L~~L~Ls~N-~l~~~~p------~~l~~l~~L~~L~L~~n~-l~~~~p~-~~~~l~~L~~L~L~  474 (768)
T 3rgz_A          407 TGKI---PPTLSNCSELVSLHLSFN-YLSGTIP------SSLGSLSKLRDLKLWLNM-LEGEIPQ-ELMYVKTLETLILD  474 (768)
T ss_dssp             EEEC---CGGGGGCTTCCEEECCSS-EEESCCC------GGGGGCTTCCEEECCSSC-CCSCCCG-GGGGCTTCCEEECC
T ss_pred             cccc---CHHHhcCCCCCEEECcCC-cccCccc------HHHhcCCCCCEEECCCCc-ccCcCCH-HHcCCCCceEEEec
Confidence            2111   122345556666666653 3332111      113456666666666643 3322222 24556666666666


Q ss_pred             ccccchhhhccccccccCCCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCcccccc
Q 005744          567 DCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVV  646 (679)
Q Consensus       567 ~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~  646 (679)
                      +|.-...++.             .+..+++|++|++++|.-...+|..     +..++.++.+....+.-...+|.....
T Consensus       475 ~N~l~~~~p~-------------~l~~l~~L~~L~L~~N~l~~~~p~~-----~~~l~~L~~L~L~~N~l~~~~p~~l~~  536 (768)
T 3rgz_A          475 FNDLTGEIPS-------------GLSNCTNLNWISLSNNRLTGEIPKW-----IGRLENLAILKLSNNSFSGNIPAELGD  536 (768)
T ss_dssp             SSCCCSCCCG-------------GGGGCTTCCEEECCSSCCCSCCCGG-----GGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred             CCcccCcCCH-------------HHhcCCCCCEEEccCCccCCcCChH-----HhcCCCCCEEECCCCcccCcCCHHHcC
Confidence            6632222221             4567888888888887533344443     345667788888777666667777778


Q ss_pred             CCCcceeeccccccc-cccCCCcc
Q 005744          647 FPSLKKLKLSSINVE-KIWLNSFS  669 (679)
Q Consensus       647 ~p~L~~L~l~~~~l~-~l~~~~~~  669 (679)
                      +++|+.|++++|++. .+|...+.
T Consensus       537 l~~L~~L~Ls~N~l~g~ip~~~~~  560 (768)
T 3rgz_A          537 CRSLIWLDLNTNLFNGTIPAAMFK  560 (768)
T ss_dssp             CTTCCEEECCSSEEESBCCGGGGT
T ss_pred             CCCCCEEECCCCccCCcCChHHhc
Confidence            899999999999776 67765543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.98  E-value=9.7e-31  Score=292.38  Aligned_cols=436  Identities=15%  Similarity=0.084  Sum_probs=297.3

Q ss_pred             CeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCc
Q 005744          212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC  290 (679)
Q Consensus       212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~  290 (679)
                      -++++.++..+..+|..+ .+++++|++++|.+.+..|. .|.++++|++|++++|.++.+ |..|+++++|++|++++|
T Consensus        14 ~~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n   91 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN   91 (606)
T ss_dssp             TTEEECTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CceEECCCCCcccCcCCC-CCcCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence            457888888888898766 34799999999999854444 469999999999999999876 788999999999999999


Q ss_pred             ccCC--cccccCCCCCcEEEecCCCCCcc-chhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744          291 LVVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE  367 (679)
Q Consensus       291 ~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (679)
                      .+..  |..++++++|++|++++|.++.+ |..++++++|++|++++ +.+..++...+..+++|++|++++|.+...  
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--  168 (606)
T 3t6q_A           92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS-NHISSIKLPKGFPTEKLKVLDFQNNAIHYL--  168 (606)
T ss_dssp             CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCS-SCCCCCCCCTTCCCTTCCEEECCSSCCCEE--
T ss_pred             cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCC-CcccccCcccccCCcccCEEEcccCccccc--
Confidence            9987  78899999999999999999987 56799999999999999 567776433356699999999999987532  


Q ss_pred             cCCcCChhhhhcCCCCc--eEEeecCCCccCCccc-ccc-----------------------------------------
Q 005744          368 GQSNASLGELKQLSRLT--TLEVHIPDAQVMPQDL-VFV-----------------------------------------  403 (679)
Q Consensus       368 ~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~-~~~-----------------------------------------  403 (679)
                           ....+..+++|+  .|++++|.+..++... ...                                         
T Consensus       169 -----~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i  243 (606)
T 3t6q_A          169 -----SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI  243 (606)
T ss_dssp             -----CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCC
T ss_pred             -----ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccccccc
Confidence                 235677888888  7888888776655432 222                                         


Q ss_pred             -----------ccceeEEEeCCcc----cCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCccccccccc
Q 005744          404 -----------ELERFRICIGDVW----SWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELD  468 (679)
Q Consensus       404 -----------~L~~L~l~~~~~~----~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  468 (679)
                                 +|+.+++..+...    ..+..+++|+.|+++++....+|.++.. +++|++|++++|......+..+ 
T Consensus       244 ~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~-  321 (606)
T 3t6q_A          244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG-LSTLKKLVLSANKFENLCQISA-  321 (606)
T ss_dssp             CGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCS-CTTCCEEECTTCCCSBGGGGCG-
T ss_pred             ChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcc-cccCCEEECccCCcCcCchhhh-
Confidence                       3344444333221    2356678888888888887777777665 6888889988887655556566 


Q ss_pred             chhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCcccc
Q 005744          469 DEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHL  548 (679)
Q Consensus       469 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l  548 (679)
                        ..+++|++|++++|.....++.  .....+++|++|++++ +.+..+....    .....+++|++|++++| ++..+
T Consensus       322 --~~l~~L~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l~~-n~l~~~~~~~----~~~~~l~~L~~L~l~~n-~l~~~  391 (606)
T 3t6q_A          322 --SNFPSLTHLSIKGNTKRLELGT--GCLENLENLRELDLSH-DDIETSDCCN----LQLRNLSHLQSLNLSYN-EPLSL  391 (606)
T ss_dssp             --GGCTTCSEEECCSCSSCCBCCS--STTTTCTTCCEEECCS-SCCCEEEEST----TTTTTCTTCCEEECCSC-SCEEE
T ss_pred             --hccCcCCEEECCCCCcccccch--hhhhccCcCCEEECCC-CccccccCcc----hhcccCCCCCEEECCCC-cCCcC
Confidence              7788999999988864333321  2246788999999988 4555543111    12567899999999985 56666


Q ss_pred             ccHHHHHHhhcCcEEEEcccccchhhhccccc------------cccCCCCccccccccccceeeccCCCCccccccCCC
Q 005744          549 FPFSLVKNLLQLQKVKVTDCTNLKLIVGKESE------------NSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLE  616 (679)
Q Consensus       549 ~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~------------~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~  616 (679)
                      ++ ..+..+++|++|++++|.--...+...-.            ..........+..+++|++|++++|+ +...... .
T Consensus       392 ~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~  468 (606)
T 3t6q_A          392 KT-EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQ-K  468 (606)
T ss_dssp             CT-TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEEC-S
T ss_pred             CH-HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC-CCccccc-c
Confidence            44 34677899999999988432222211000            00000001123445555555555542 2210000 0


Q ss_pred             CCcccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccccccCCCccccc
Q 005744          617 TPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIE  672 (679)
Q Consensus       617 ~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~~~~~~~  672 (679)
                      ...+..+++++.+....|.-....+.....+++|+.|++++|+++.++++.+....
T Consensus       469 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  524 (606)
T 3t6q_A          469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK  524 (606)
T ss_dssp             SCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred             chhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence            01134455566666666543332233445677788888888877777766665443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.98  E-value=1.2e-30  Score=295.78  Aligned_cols=452  Identities=15%  Similarity=0.118  Sum_probs=261.4

Q ss_pred             cccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc
Q 005744          197 NVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS  274 (679)
Q Consensus       197 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~  274 (679)
                      .+..+..+|...+.++++|++++|.+..++.. + .+++|++|++++|.+.+..| ..|+++++|++|++++|.++.+|.
T Consensus        12 s~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~   90 (680)
T 1ziw_A           12 SHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSD   90 (680)
T ss_dssp             CSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCCCT
T ss_pred             CCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCccCh
Confidence            34556667766678899999999999888764 3 88999999999998875444 445889999999999999998876


Q ss_pred             -cccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCcc-chhhhcCCCCCEEcccCCccccccCccccc--C
Q 005744          275 -SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVIS--N  348 (679)
Q Consensus       275 -~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~--~  348 (679)
                       .|+++++|++|++++|.+..  +..++++++|++|++++|.++.. |..++++++|++|++++ +.++.+++..++  .
T Consensus        91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~  169 (680)
T 1ziw_A           91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN-NKIQALKSEELDIFA  169 (680)
T ss_dssp             TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS-SCCCCBCHHHHGGGT
T ss_pred             hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC-CcccccCHHHhhccc
Confidence             58999999999999999887  46799999999999999988865 45578899999999998 566777665443  4


Q ss_pred             CCCCcEEEccCCcccceeccCCcCChhhhh------------------------cCCCCceEEeecCCCccCCcc-c-cc
Q 005744          349 LTRLEELYMGNSFTQWKVEGQSNASLGELK------------------------QLSRLTTLEVHIPDAQVMPQD-L-VF  402 (679)
Q Consensus       349 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~------------------------~l~~L~~L~l~~~~~~~~~~~-~-~~  402 (679)
                      +++|++|++++|.+....++    .+..+.                        ..++|+.|++++|.+...+.. + .+
T Consensus       170 ~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l  245 (680)
T 1ziw_A          170 NSSLKKLELSSNQIKEFSPG----CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL  245 (680)
T ss_dssp             TCEESEEECTTCCCCCBCTT----GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGG
T ss_pred             cccccEEECCCCcccccChh----hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhcc
Confidence            57889999988866533221    111111                        124555666665555443322 2 22


Q ss_pred             --cccceeEEEeCCc----ccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccc---------------------
Q 005744          403 --VELERFRICIGDV----WSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLD---------------------  455 (679)
Q Consensus       403 --~~L~~L~l~~~~~----~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~---------------------  455 (679)
                        ++|+.|++..+..    ...+..+++|+.|+++++.....+......+++|+.|++.                     
T Consensus       246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~  325 (680)
T 1ziw_A          246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF  325 (680)
T ss_dssp             GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred             CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhc
Confidence              2366666644432    1234455566666666554444322211124455555554                     


Q ss_pred             ------------cccCcccccccccchhhccccceEeeecCCC-eeEEEeCCCccccccccceeeccccccccccccCcc
Q 005744          456 ------------ELAGFKNVVHELDDEEGFARLRHLHVHNGPE-ILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKV  522 (679)
Q Consensus       456 ------------~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~  522 (679)
                                  +|......+..+   ..+++|++|++++|.. ...+..........++|+.|++++ +++..+...  
T Consensus       326 ~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~-n~l~~~~~~--  399 (680)
T 1ziw_A          326 QWLKCLEHLNMEDNDIPGIKSNMF---TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK-NKISKIESD--  399 (680)
T ss_dssp             TTCTTCCEEECCSCCBCCCCTTTT---TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTT-SCCCEECTT--
T ss_pred             ccCCCCCEEECCCCccCCCChhHh---ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCC-CCCCeEChh--
Confidence                        433322222223   3444444444444321 111111000000113444444444 233333221  


Q ss_pred             cCCCCccccCCccEEEEecCCCcc-ccccHHHHHHhhcCcEEEEcccccchhhhccc--------------cccccCCCC
Q 005744          523 RLNEDDKSFSNLRIIKVEGCHRVK-HLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKE--------------SENSAHKNG  587 (679)
Q Consensus       523 ~~~~~~~~l~~L~~L~l~~c~~L~-~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~--------------~~~~~~~~~  587 (679)
                          ....+++|+.|+++++ .+. .++ ...+..+++|++|++++|. +..+....              .........
T Consensus       400 ----~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  472 (680)
T 1ziw_A          400 ----AFSWLGHLEVLDLGLN-EIGQELT-GQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSS  472 (680)
T ss_dssp             ----TTTTCTTCCEEECCSS-CCEEECC-SGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred             ----hhhCCCCCCEEeCCCC-cCccccC-cccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccC
Confidence                1345677777777764 333 232 2334566777777777663 22221110              000000011


Q ss_pred             ccccccccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCcc---------ccccCCCcceeecccc
Q 005744          588 SISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFN---------ERVVFPSLKKLKLSSI  658 (679)
Q Consensus       588 ~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~---------~~~~~p~L~~L~l~~~  658 (679)
                      ...+..+++|+.|+++++ +++.++...    +..+..++.+....+. +..++.         ....+++|+.|++++|
T Consensus       473 p~~~~~l~~L~~L~Ls~N-~l~~i~~~~----~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N  546 (680)
T 1ziw_A          473 PSPFQPLRNLTILDLSNN-NIANINDDM----LEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN  546 (680)
T ss_dssp             SCTTTTCTTCCEEECCSS-CCCCCCTTT----TTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred             CcccccCCCCCEEECCCC-CCCcCChhh----hccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence            123556677777777764 455544331    2344555555555432 222211         1345688899999988


Q ss_pred             ccccccCCCcccccc
Q 005744          659 NVEKIWLNSFSAIES  673 (679)
Q Consensus       659 ~l~~l~~~~~~~~~~  673 (679)
                      +++.||.+.|....+
T Consensus       547 ~l~~i~~~~~~~l~~  561 (680)
T 1ziw_A          547 GFDEIPVEVFKDLFE  561 (680)
T ss_dssp             CCCCCCTTTTTTCTT
T ss_pred             CCCCCCHHHcccccC
Confidence            888888877765444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=1e-31  Score=304.82  Aligned_cols=390  Identities=16%  Similarity=0.157  Sum_probs=271.9

Q ss_pred             CCCeEEEccCCCc-ccCCccc-CCcceeeeee-ccCCcccC---------------------------------------
Q 005744          210 EAPTAISIPFRGI-YELPERL-GFLKLKLFLF-FTENLSLQ---------------------------------------  247 (679)
Q Consensus       210 ~~l~~l~l~~~~~-~~l~~~~-~~~~L~~L~l-~~~~~~~~---------------------------------------  247 (679)
                      .++..|+|+++.+ ..+|+.+ .+++|++|++ ++|.+.+.                                       
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            5788999999988 4677777 8999999999 55533222                                       


Q ss_pred             -------------------------------------CCchhhcCCCCccEEEeCCCcCCc------------------C
Q 005744          248 -------------------------------------IPDPFFEGMTELRVLDLTGFRFHS------------------L  272 (679)
Q Consensus       248 -------------------------------------~~~~~~~~l~~L~~L~l~~~~l~~------------------l  272 (679)
                                                           +|.. ++++++|++|++++|.++.                  +
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                                                 6665 4889999999999999988                  9


Q ss_pred             Ccccc--CCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCC-CCc--cchhhhcCC-------CCCEEcccCCccc
Q 005744          273 PSSLG--CLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSS-IEQ--LPREIGQLT-------CLKLLDLSNCSKL  338 (679)
Q Consensus       273 p~~i~--~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~-l~~--lp~~i~~L~-------~L~~L~l~~~~~l  338 (679)
                      |..++  ++++|++|++++|.+..  |..++++++|++|++++|+ ++.  +|..+++++       +|++|++++ +.+
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~-N~L  560 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY-NNL  560 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS-SCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC-CcC
Confidence            99988  99999999999998766  8889999999999999997 884  898888776       999999999 567


Q ss_pred             cccCc-ccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc-cccc-cceeEEEeCCc
Q 005744          339 KEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVE-LERFRICIGDV  415 (679)
Q Consensus       339 ~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~-L~~L~l~~~~~  415 (679)
                      ..+|. ..++++++|++|++++|.+. .       . ..+..+++|+.|++++|.+..+|..+ .+++ |+.|++..+..
T Consensus       561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~-~-------l-p~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          561 EEFPASASLQKMVKLGLLDCVHNKVR-H-------L-EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL  631 (876)
T ss_dssp             CBCCCHHHHTTCTTCCEEECTTSCCC-B-------C-CCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCC
T ss_pred             CccCChhhhhcCCCCCEEECCCCCcc-c-------c-hhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCC
Confidence            78887 23899999999999999774 1       1 26778899999999999988888777 6777 88888876653


Q ss_pred             c---cCCCCCC--CcceEEecCCCcceech----hHHH-HhhcccccccccccCcccccccccchhhccccceEeeecCC
Q 005744          416 W---SWSDGYE--TSKTLKLQLNNSTYLGY----GMKM-LLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP  485 (679)
Q Consensus       416 ~---~~~~~~~--~l~~L~L~~~~~~~~~~----~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  485 (679)
                      .   ..+....  +|+.|+++++.....++    .+.. .+++|+.|++++|... .+|..+.  ..+++|++|++++|.
T Consensus       632 ~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~--~~l~~L~~L~Ls~N~  708 (876)
T 4ecn_A          632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELF--ATGSPISTIILSNNL  708 (876)
T ss_dssp             CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHH--HTTCCCSEEECCSCC
T ss_pred             CcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHH--ccCCCCCEEECCCCc
Confidence            3   2333332  37777777765533211    1111 1236777888777644 4554431  356778888887774


Q ss_pred             CeeEEEeCCCc-----cccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcC
Q 005744          486 EILHILNSDGR-----VGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQL  560 (679)
Q Consensus       486 ~l~~~~~~~~~-----~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L  560 (679)
                       +..++.....     ...+++|+.|++++ ++++.++....     ...+++|+.|++++| +++.+|.  .+..+++|
T Consensus       709 -L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~-N~L~~lp~~l~-----~~~l~~L~~L~Ls~N-~L~~lp~--~l~~L~~L  778 (876)
T 4ecn_A          709 -MTSIPENSLKPKDGNYKNTYLLTTIDLRF-NKLTSLSDDFR-----ATTLPYLSNMDVSYN-CFSSFPT--QPLNSSQL  778 (876)
T ss_dssp             -CSCCCTTSSSCTTSCCTTGGGCCEEECCS-SCCCCCCGGGS-----TTTCTTCCEEECCSS-CCSSCCC--GGGGCTTC
T ss_pred             -CCccChHHhccccccccccCCccEEECCC-CCCccchHHhh-----hccCCCcCEEEeCCC-CCCccch--hhhcCCCC
Confidence             3333321111     11234778888877 46665543211     126777888888774 5666643  24577788


Q ss_pred             cEEEEccccc------chhhhccccccccCCCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCC
Q 005744          561 QKVKVTDCTN------LKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDP  634 (679)
Q Consensus       561 ~~L~i~~c~~------L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~  634 (679)
                      +.|++++|+.      ...++             ..+..+++|+.|+|++|+ +..+|..+                   
T Consensus       779 ~~L~Ls~N~~ls~N~l~~~ip-------------~~l~~L~~L~~L~Ls~N~-L~~Ip~~l-------------------  825 (876)
T 4ecn_A          779 KAFGIRHQRDAEGNRILRQWP-------------TGITTCPSLIQLQIGSND-IRKVDEKL-------------------  825 (876)
T ss_dssp             CEEECCCCBCTTCCBCCCCCC-------------TTGGGCSSCCEEECCSSC-CCBCCSCC-------------------
T ss_pred             CEEECCCCCCcccccccccCh-------------HHHhcCCCCCEEECCCCC-CCccCHhh-------------------
Confidence            8888876441      11221             145577778888887763 45544421                   


Q ss_pred             CCCccCccccccCCCcceeeccccccccccCCCc
Q 005744          635 KDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSF  668 (679)
Q Consensus       635 ~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~~~  668 (679)
                                  +++|+.|+|++|++..+....+
T Consensus       826 ------------~~~L~~LdLs~N~l~~i~~~~~  847 (876)
T 4ecn_A          826 ------------TPQLYILDIADNPNISIDVTSV  847 (876)
T ss_dssp             ------------CSSSCEEECCSCTTCEEECGGG
T ss_pred             ------------cCCCCEEECCCCCCCccChHHc
Confidence                        2688888888888888776655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=1.3e-31  Score=299.21  Aligned_cols=353  Identities=14%  Similarity=0.135  Sum_probs=236.7

Q ss_pred             CCchhhcCCCCccEEEeCCCcCCc------------------CCcccc--CCcCCCEEEcCCcccCC--cccccCCCCCc
Q 005744          248 IPDPFFEGMTELRVLDLTGFRFHS------------------LPSSLG--CLINLRTLSLENCLVVD--VAIIGDLKKLE  305 (679)
Q Consensus       248 ~~~~~~~~l~~L~~L~l~~~~l~~------------------lp~~i~--~l~~L~~L~L~~~~~~~--~~~i~~L~~L~  305 (679)
                      +|.. ++++++|++|++++|.++.                  +|..++  ++++|++|++++|.+..  |..++++++|+
T Consensus       198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  276 (636)
T 4eco_A          198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ  276 (636)
T ss_dssp             ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred             CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence            6665 4889999999999999988                  999999  99999999999998776  88999999999


Q ss_pred             EEEecCCC-CC--ccchhhhcC------CCCCEEcccCCccccccCc-ccccCCCCCcEEEccCCcccceeccCCcCChh
Q 005744          306 ILSLKHSS-IE--QLPREIGQL------TCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLG  375 (679)
Q Consensus       306 ~L~l~~~~-l~--~lp~~i~~L------~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  375 (679)
                      +|++++|+ ++  .+|..++++      ++|++|++++ +.++.+|. +.++++++|++|++++|.+.+..       . 
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i-------p-  347 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY-NNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-------P-  347 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS-SCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC-------C-
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC-CcCCccCchhhhccCCCCCEEeCcCCcCccch-------h-
Confidence            99999997 88  489988887      9999999999 56678887 23899999999999999775322       1 


Q ss_pred             hhhcCCCCceEEeecCCCccCCccc-cccc-cceeEEEeCCcc---cCCCCC--CCcceEEecCCCcce-echhHHH---
Q 005744          376 ELKQLSRLTTLEVHIPDAQVMPQDL-VFVE-LERFRICIGDVW---SWSDGY--ETSKTLKLQLNNSTY-LGYGMKM---  444 (679)
Q Consensus       376 ~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~-L~~L~l~~~~~~---~~~~~~--~~l~~L~L~~~~~~~-~~~~~~~---  444 (679)
                      .+..+++|+.|++++|.+..+|..+ .+++ |+.|++..+...   ..+...  ++|+.|+++++.... .|.++..   
T Consensus       348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~  427 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP  427 (636)
T ss_dssp             CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred             hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence            5677889999999999888888777 6777 888888665532   222222  267777777655433 2222220   


Q ss_pred             ---HhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCc-----cccccccceeeccccccccc
Q 005744          445 ---LLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGR-----VGTFPLLESLFLHNLINLEK  516 (679)
Q Consensus       445 ---~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-----~~~~~~L~~L~l~~c~~L~~  516 (679)
                         .+++|+.|++++|... .+|..+.  ..+++|++|++++|.. ..++.....     ...+++|++|++++ ++++.
T Consensus       428 ~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~l~~L~~L~Ls~N~l-~~i~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~  502 (636)
T 4eco_A          428 TPFKGINVSSINLSNNQIS-KFPKELF--STGSPLSSINLMGNML-TEIPKNSLKDENENFKNTYLLTSIDLRF-NKLTK  502 (636)
T ss_dssp             SCCCCCCEEEEECCSSCCC-SCCTHHH--HTTCCCSEEECCSSCC-SBCCSSSSEETTEECTTGGGCCEEECCS-SCCCB
T ss_pred             ccccCCCCCEEECcCCccC-cCCHHHH--ccCCCCCEEECCCCCC-CCcCHHHhccccccccccCCccEEECcC-CcCCc
Confidence               1346777777776543 4444321  3467777777777642 233221110     01123777777777 45555


Q ss_pred             cccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEccccc------chhhhccccccccCCCCccc
Q 005744          517 VCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTN------LKLIVGKESENSAHKNGSIS  590 (679)
Q Consensus       517 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~------L~~l~~~~~~~~~~~~~~~~  590 (679)
                      ++....     ...+++|+.|+++++ +++.+|.  .+..+++|++|++++|..      ...++.             .
T Consensus       503 lp~~~~-----~~~l~~L~~L~Ls~N-~l~~ip~--~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-------------~  561 (636)
T 4eco_A          503 LSDDFR-----ATTLPYLVGIDLSYN-SFSKFPT--QPLNSSTLKGFGIRNQRDAQGNRTLREWPE-------------G  561 (636)
T ss_dssp             CCGGGS-----TTTCTTCCEEECCSS-CCSSCCC--GGGGCSSCCEEECCSCBCTTCCBCCCCCCT-------------T
T ss_pred             cChhhh-----hccCCCcCEEECCCC-CCCCcCh--hhhcCCCCCEEECCCCcccccCcccccChH-------------H
Confidence            543211     125677777777774 5555533  234677777777755431      122221             3


Q ss_pred             cccccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccccccCCCc
Q 005744          591 GVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSF  668 (679)
Q Consensus       591 l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~~~  668 (679)
                      +..+++|++|+|++|. +..+|..                               .+++|+.|++++|.+..+....+
T Consensus       562 l~~l~~L~~L~Ls~N~-l~~ip~~-------------------------------~~~~L~~L~Ls~N~l~~~~~~~~  607 (636)
T 4eco_A          562 ITLCPSLTQLQIGSND-IRKVNEK-------------------------------ITPNISVLDIKDNPNISIDLSYV  607 (636)
T ss_dssp             GGGCSSCCEEECCSSC-CCBCCSC-------------------------------CCTTCCEEECCSCTTCEEECTTT
T ss_pred             HhcCCCCCEEECCCCc-CCccCHh-------------------------------HhCcCCEEECcCCCCccccHHhc
Confidence            4567777777777653 3444432                               12788888888888887776554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=4.2e-31  Score=291.71  Aligned_cols=415  Identities=15%  Similarity=0.161  Sum_probs=252.7

Q ss_pred             ccchhhhhhhhcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCcc
Q 005744          198 VADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS  275 (679)
Q Consensus       198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~  275 (679)
                      +..++.+|....+++++|++++|.+..++. .+ .+++|++|++++|.+.+ ++...|.++++|++|++++|.++.+|..
T Consensus        14 ~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   92 (549)
T 2z81_A           14 SRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSS   92 (549)
T ss_dssp             TSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred             CCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHH
Confidence            345667777666899999999999977753 44 89999999999999875 4444458999999999999999988765


Q ss_pred             -ccCCcCCCEEEcCCcccCC---cccccCCCCCcEEEecCCC-CCccc-hhhhcCCCCCEEcccCCccccccCcccccCC
Q 005744          276 -LGCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSS-IEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNL  349 (679)
Q Consensus       276 -i~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~-l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l  349 (679)
                       ++++++|++|++++|.+..   +..++++++|++|++++|. +..+| ..++++++|++|++++| .++...+..++++
T Consensus        93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l  171 (549)
T 2z81_A           93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSI  171 (549)
T ss_dssp             HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTC
T ss_pred             HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhhhhcc
Confidence             9999999999999999874   5789999999999999997 77777 47899999999999984 5555444458999


Q ss_pred             CCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCC---ccc--cccccceeEEEe------------
Q 005744          350 TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMP---QDL--VFVELERFRICI------------  412 (679)
Q Consensus       350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~--~~~~L~~L~l~~------------  412 (679)
                      ++|++|+++++......       ...+..+++|+.|++++|.+...+   ..+  ..++|+.|++..            
T Consensus       172 ~~L~~L~l~~n~~~~~~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  244 (549)
T 2z81_A          172 RDIHHLTLHLSESAFLL-------EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL  244 (549)
T ss_dssp             SEEEEEEEECSBSTTHH-------HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred             ccCceEecccCcccccc-------hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence            99999999888653111       112356889999999998877642   111  234444444432            


Q ss_pred             ----------------CCccc----------CCCCCC-----------------------------CcceEEecCCCcce
Q 005744          413 ----------------GDVWS----------WSDGYE-----------------------------TSKTLKLQLNNSTY  437 (679)
Q Consensus       413 ----------------~~~~~----------~~~~~~-----------------------------~l~~L~L~~~~~~~  437 (679)
                                      +....          .+....                             .++.+.++++....
T Consensus       245 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~  324 (549)
T 2z81_A          245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL  324 (549)
T ss_dssp             GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC
T ss_pred             HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc
Confidence                            21100          112223                             34444444444444


Q ss_pred             echhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeecccccccccc
Q 005744          438 LGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKV  517 (679)
Q Consensus       438 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~  517 (679)
                      +|.++...+++|+.|++++|......|......+.+++|++|++++|. ++.++........+++|++|++++ ++++.+
T Consensus       325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~l  402 (549)
T 2z81_A          325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISR-NTFHPM  402 (549)
T ss_dssp             CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTT-CCCCCC
T ss_pred             CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCC-CCCccC
Confidence            454443334555555555555433332111001445555555555553 111110001123455555555555 244443


Q ss_pred             ccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCcccccccccc
Q 005744          518 CDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKL  597 (679)
Q Consensus       518 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L  597 (679)
                      +..       ...+++|+.|++++| +++.++..    ..++|++|++++| .++.++                ..+++|
T Consensus       403 p~~-------~~~~~~L~~L~Ls~N-~l~~l~~~----~~~~L~~L~Ls~N-~l~~~~----------------~~l~~L  453 (549)
T 2z81_A          403 PDS-------CQWPEKMRFLNLSST-GIRVVKTC----IPQTLEVLDVSNN-NLDSFS----------------LFLPRL  453 (549)
T ss_dssp             CSC-------CCCCTTCCEEECTTS-CCSCCCTT----SCTTCSEEECCSS-CCSCCC----------------CCCTTC
T ss_pred             Chh-------hcccccccEEECCCC-Ccccccch----hcCCceEEECCCC-Chhhhc----------------ccCChh
Confidence            321       234455555555553 34444221    1245555655555 333321                256777


Q ss_pred             ceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCccc-cccCCCcceeecccccc
Q 005744          598 HFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNE-RVVFPSLKKLKLSSINV  660 (679)
Q Consensus       598 ~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~-~~~~p~L~~L~l~~~~l  660 (679)
                      ++|+++++ +++.+|..      ..++.++.+....+ .+..++.. ...+++|+.|++++|.+
T Consensus       454 ~~L~Ls~N-~l~~ip~~------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          454 QELYISRN-KLKTLPDA------SLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             CEEECCSS-CCSSCCCG------GGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred             cEEECCCC-ccCcCCCc------ccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence            77777765 45555432      23344555555543 23333332 34567777777776654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.97  E-value=1.3e-29  Score=287.25  Aligned_cols=434  Identities=17%  Similarity=0.121  Sum_probs=232.8

Q ss_pred             hhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCC
Q 005744          207 KIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLR  283 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~  283 (679)
                      ...+++++|++++|.+..++.. + .+++|++|++++|.+. .+|...|+++++|++|++++|.++.+| ..++++++|+
T Consensus        46 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (680)
T 1ziw_A           46 TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI  124 (680)
T ss_dssp             GGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred             hCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence            4467788888888887666443 3 7788888888888766 566655678888888888888887775 5678888888


Q ss_pred             EEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-h--hcCCCCCEEcccCCccccccCcccccCCC--------
Q 005744          284 TLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-I--GQLTCLKLLDLSNCSKLKEIRPNVISNLT--------  350 (679)
Q Consensus       284 ~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i--~~L~~L~~L~l~~~~~l~~lp~~~l~~l~--------  350 (679)
                      +|++++|.+..  +..++++++|++|++++|.++.++.. +  ..+++|++|++++| .++.+++..++.+.        
T Consensus       125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~  203 (680)
T 1ziw_A          125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLN  203 (680)
T ss_dssp             EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEEECT
T ss_pred             EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC-cccccChhhhhhhhhhhhhhcc
Confidence            88888887776  56677888888888888877766543 2  24567777777773 45554443333322        


Q ss_pred             -------------------C--------------------------CcEEEccCCcccceeccCCcCChhhhhcCCCCce
Q 005744          351 -------------------R--------------------------LEELYMGNSFTQWKVEGQSNASLGELKQLSRLTT  385 (679)
Q Consensus       351 -------------------~--------------------------L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~  385 (679)
                                         +                          |++|++++|.+...       ....+..+++|+.
T Consensus       204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~  276 (680)
T 1ziw_A          204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV-------GNDSFAWLPQLEY  276 (680)
T ss_dssp             TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE-------CTTTTTTCTTCCE
T ss_pred             ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc-------CcccccCcccccE
Confidence                               2                          44444443333211       1234555666777


Q ss_pred             EEeecCCCccCCcc-c-cccccceeEEEeCC---------ccc----CCCCCCCcceEEecCCCcceechhHHHHhhccc
Q 005744          386 LEVHIPDAQVMPQD-L-VFVELERFRICIGD---------VWS----WSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTE  450 (679)
Q Consensus       386 L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~---------~~~----~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~  450 (679)
                      |++++|.+...+.. + .+++|+.|++..+.         .+.    .+..+++|+.|+++++.....+......+++|+
T Consensus       277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  356 (680)
T 1ziw_A          277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK  356 (680)
T ss_dssp             EECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCC
T ss_pred             eeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCc
Confidence            77766665544322 2 44555555543210         000    233445555555555444333322222234444


Q ss_pred             ccccc----------------------------cccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccc
Q 005744          451 DLHLD----------------------------ELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPL  502 (679)
Q Consensus       451 ~L~l~----------------------------~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  502 (679)
                      .|+++                            +|......+..+   ..+++|++|++++|.....++.  .....+++
T Consensus       357 ~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~--~~~~~l~~  431 (680)
T 1ziw_A          357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF---SWLGHLEVLDLGLNEIGQELTG--QEWRGLEN  431 (680)
T ss_dssp             EEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSSCCEEECCS--GGGTTCTT
T ss_pred             EEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh---hCCCCCCEEeCCCCcCccccCc--ccccCccc
Confidence            44444                            443333333344   5667777777777653332221  22345666


Q ss_pred             cceeeccccccccccccCccc--------------------CCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcE
Q 005744          503 LESLFLHNLINLEKVCDGKVR--------------------LNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQK  562 (679)
Q Consensus       503 L~~L~l~~c~~L~~~~~~~~~--------------------~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~  562 (679)
                      |++|+++++ ++..+....+.                    .+.....+++|+.|++++| +++.+++ ..+..+++|++
T Consensus       432 L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~  508 (680)
T 1ziw_A          432 IFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANIND-DMLEGLEKLEI  508 (680)
T ss_dssp             CCEEECCSC-SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCE
T ss_pred             ccEEecCCC-CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCCh-hhhccccccCE
Confidence            666666663 33333222111                    0111334455555555552 4444432 22345555555


Q ss_pred             EEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCcc
Q 005744          563 VKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFN  642 (679)
Q Consensus       563 L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~  642 (679)
                      |++++| .+..++....    .......+..+++|++|+++++ +++.++...    +..++.++.+.... ..+..++.
T Consensus       509 L~Ls~N-~l~~~~~~~~----~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~----~~~l~~L~~L~Ls~-N~l~~l~~  577 (680)
T 1ziw_A          509 LDLQHN-NLARLWKHAN----PGGPIYFLKGLSHLHILNLESN-GFDEIPVEV----FKDLFELKIIDLGL-NNLNTLPA  577 (680)
T ss_dssp             EECCSS-CCGGGGSTTS----TTSCCCTTTTCTTCCEEECCSS-CCCCCCTTT----TTTCTTCCEEECCS-SCCCCCCT
T ss_pred             EeCCCC-Cccccchhhc----cCCcchhhcCCCCCCEEECCCC-CCCCCCHHH----cccccCcceeECCC-CCCCcCCH
Confidence            555554 3333321100    0000012445666666666664 455544321    23344455555433 23444444


Q ss_pred             cc-ccCCCcceeeccccccccccCCCc
Q 005744          643 ER-VVFPSLKKLKLSSINVEKIWLNSF  668 (679)
Q Consensus       643 ~~-~~~p~L~~L~l~~~~l~~l~~~~~  668 (679)
                      .. ..+++|+.|++++|+++.++...+
T Consensus       578 ~~~~~l~~L~~L~L~~N~l~~~~~~~~  604 (680)
T 1ziw_A          578 SVFNNQVSLKSLNLQKNLITSVEKKVF  604 (680)
T ss_dssp             TTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred             hHhCCCCCCCEEECCCCcCCccChhHh
Confidence            32 345777777777777777666543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.2e-29  Score=281.57  Aligned_cols=421  Identities=16%  Similarity=0.101  Sum_probs=259.6

Q ss_pred             CeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCc
Q 005744          212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC  290 (679)
Q Consensus       212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~  290 (679)
                      .+.++-++..+..+|..+ .+++++|++++|.+.+ ++...|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus         9 ~~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n   86 (570)
T 2z63_A            9 NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (570)
T ss_dssp             TTEEECCSSCCSSCCSSS-CSSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CcEEEeCCCCccccCCCc-cccccEEEccCCccCc-cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence            455777777788888754 3679999999999874 4444569999999999999999987 467999999999999999


Q ss_pred             ccCC--cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccc--cCcccccCCCCCcEEEccCCcccce
Q 005744          291 LVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWK  365 (679)
Q Consensus       291 ~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~~~~  365 (679)
                      .+..  +..|+++++|++|++++|.++.+|. .++++++|++|++++ +.+..  +|.. ++++++|++|++++|.+...
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCS-SCCCCCCCCGG-GGGCTTCCEEECTTSCCCEE
T ss_pred             cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCC-CccceecChhh-hcccCCCCEEeCcCCcccee
Confidence            9988  5789999999999999999998886 599999999999999 55665  5655 89999999999999987543


Q ss_pred             eccCCcCChhhhhcCCCC-ceEEeecCCCccCCccc-cccccceeEEEeC------------------------------
Q 005744          366 VEGQSNASLGELKQLSRL-TTLEVHIPDAQVMPQDL-VFVELERFRICIG------------------------------  413 (679)
Q Consensus       366 ~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~------------------------------  413 (679)
                      ..    ..+..+.+++.+ +.++++.|.+..++... ...+|+.|++..+                              
T Consensus       165 ~~----~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~  240 (570)
T 2z63_A          165 YC----TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE  240 (570)
T ss_dssp             CG----GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred             cH----HHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence            22    222333333221 56666666655444332 2223444433221                              


Q ss_pred             --------------------------------CcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCcc
Q 005744          414 --------------------------------DVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFK  461 (679)
Q Consensus       414 --------------------------------~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  461 (679)
                                                      ..+..+..+++++.++++++....+|.++.. + +|++|++.+|... 
T Consensus       241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~-~-~L~~L~l~~n~~~-  317 (570)
T 2z63_A          241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN-F-GWQHLELVNCKFG-  317 (570)
T ss_dssp             SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSC-C-CCSEEEEESCBCS-
T ss_pred             hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhcc-C-CccEEeeccCccc-
Confidence                                            0112233345555555555544444444433 2 4555555544332 


Q ss_pred             cccccc------------------cchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCccc
Q 005744          462 NVVHEL------------------DDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVR  523 (679)
Q Consensus       462 ~~~~~~------------------~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~  523 (679)
                      .+|...                  .. ..+++|++|++++|. +..+.........+++|++|++++ +.+..++..   
T Consensus       318 ~l~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~---  391 (570)
T 2z63_A          318 QFPTLKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSSN---  391 (570)
T ss_dssp             SCCBCBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCS-CSEEEEEEE---
T ss_pred             ccCcccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCC-Ccccccccc---
Confidence            222210                  00 234444444444443 111110011123445555555555 233333221   


Q ss_pred             CCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeecc
Q 005744          524 LNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQ  603 (679)
Q Consensus       524 ~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  603 (679)
                          ...+++|+.|++++| .+...++...+..+++|++|++++|.-....+             ..+..+++|++|++.
T Consensus       392 ----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L~l~  453 (570)
T 2z63_A          392 ----FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-------------GIFNGLSSLEVLKMA  453 (570)
T ss_dssp             ----EETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSCCEECCT-------------TTTTTCTTCCEEECT
T ss_pred             ----ccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCcccccch-------------hhhhcCCcCcEEECc
Confidence                234566666666653 34443332234556666666666663222111             135577888888888


Q ss_pred             CCCCc-cccccCCCCCcccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccccccCCCccccc
Q 005744          604 HLPQL-TSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIE  672 (679)
Q Consensus       604 ~cp~L-~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~~~~~~~  672 (679)
                      +|.-. ..++..     +..++.++.+....|.--...+.....+++|+.|++++|+++.++.+.+...+
T Consensus       454 ~n~l~~~~~p~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  518 (570)
T 2z63_A          454 GNSFQENFLPDI-----FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT  518 (570)
T ss_dssp             TCEEGGGEECSC-----CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             CCcCccccchhh-----hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence            87422 134432     34566777777777654433344556789999999999999999887765433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=2.3e-29  Score=275.75  Aligned_cols=142  Identities=20%  Similarity=0.274  Sum_probs=92.7

Q ss_pred             eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcc
Q 005744          213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL  291 (679)
Q Consensus       213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~  291 (679)
                      +++++++|.+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++++|.
T Consensus         3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             ceEecCCCCccccccccc-ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            466777777776766554 67777777777665 34433446777777777777777665 5667777777777777777


Q ss_pred             cCC-cccccCCCCCcEEEecCCCCCc--cchhhhcCCCCCEEcccCCccccccCcccccCCCCC--cEEEccCCcc
Q 005744          292 VVD-VAIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL--EELYMGNSFT  362 (679)
Q Consensus       292 ~~~-~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L--~~L~l~~~~~  362 (679)
                      +.. |..  .+++|++|++++|.++.  +|..++++++|++|++++ +.++.   ..++.+++|  ++|++++|.+
T Consensus        81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~-n~l~~---~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST-THLEK---SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEE-SSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred             eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecC-cccch---hhccccccceeeEEEeecccc
Confidence            666 444  67777777777777664  456677777777777776 33433   225556666  7777766655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=1.3e-29  Score=283.04  Aligned_cols=343  Identities=11%  Similarity=0.133  Sum_probs=274.7

Q ss_pred             cCCccc-CCcceeeeeeccCCcccC-----------------CCchhhc--CCCCccEEEeCCCcCC-cCCccccCCcCC
Q 005744          224 ELPERL-GFLKLKLFLFFTENLSLQ-----------------IPDPFFE--GMTELRVLDLTGFRFH-SLPSSLGCLINL  282 (679)
Q Consensus       224 ~l~~~~-~~~~L~~L~l~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~l~-~lp~~i~~l~~L  282 (679)
                      .+|..+ .+++|++|++++|.+.+.                 +|..+ +  ++++|++|++++|.+. .+|..++++++|
T Consensus       197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  275 (636)
T 4eco_A          197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM  275 (636)
T ss_dssp             EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred             cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence            366666 899999999999999875                 88876 6  8999999999999966 689999999999


Q ss_pred             CEEEcCCcc-cC--C-cccccCC------CCCcEEEecCCCCCccch--hhhcCCCCCEEcccCCcccc-ccCcccccCC
Q 005744          283 RTLSLENCL-VV--D-VAIIGDL------KKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLK-EIRPNVISNL  349 (679)
Q Consensus       283 ~~L~L~~~~-~~--~-~~~i~~L------~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~-~lp~~~l~~l  349 (679)
                      ++|++++|. +.  . |..++++      ++|++|++++|.++.+|.  .++++++|++|++++| .+. .+| . ++.+
T Consensus       276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~-~~~l  352 (636)
T 4eco_A          276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP-A-FGSE  352 (636)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC-C-CEEE
T ss_pred             CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh-h-hCCC
Confidence            999999998 76  3 7778776      999999999999999999  8999999999999994 555 888 4 8999


Q ss_pred             CCCcEEEccCCcccceeccCCcCChhhhhcCCC-CceEEeecCCCccCCccc---cccccceeEEEeCCccc----CCC-
Q 005744          350 TRLEELYMGNSFTQWKVEGQSNASLGELKQLSR-LTTLEVHIPDAQVMPQDL---VFVELERFRICIGDVWS----WSD-  420 (679)
Q Consensus       350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~----~~~-  420 (679)
                      ++|++|++++|.+.        ..+..+..+++ |+.|++++|.+..+|..+   .+++|+.|++..+....    .+. 
T Consensus       353 ~~L~~L~L~~N~l~--------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  424 (636)
T 4eco_A          353 IKLASLNLAYNQIT--------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP  424 (636)
T ss_dssp             EEESEEECCSSEEE--------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred             CCCCEEECCCCccc--------cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence            99999999999775        23345788888 999999999999998876   34489999998776432    344 


Q ss_pred             ------CCCCcceEEecCCCcceechhHHHHhhcccccccccccCcccccccccc-----hhhccccceEeeecCCCeeE
Q 005744          421 ------GYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDD-----EEGFARLRHLHVHNGPEILH  489 (679)
Q Consensus       421 ------~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~l~~  489 (679)
                            ...+|+.|+++++....+|..+...+++|+.|++++|... .+|.....     ..++++|++|++++|. +..
T Consensus       425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~  502 (636)
T 4eco_A          425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTK  502 (636)
T ss_dssp             TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCB
T ss_pred             cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCc
Confidence                  5668999999999988899888776899999999998765 66654421     0123499999999996 334


Q ss_pred             EEeCCCccc--cccccceeeccccccccccccCcccCCCCccccCCccEEEEecC-----CCccccccHHHHHHhhcCcE
Q 005744          490 ILNSDGRVG--TFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGC-----HRVKHLFPFSLVKNLLQLQK  562 (679)
Q Consensus       490 ~~~~~~~~~--~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c-----~~L~~l~~~~~~~~l~~L~~  562 (679)
                      ++   ....  .+++|++|++++ +.++.+|..       ...+++|+.|+++++     +++....|. .+..+++|++
T Consensus       503 lp---~~~~~~~l~~L~~L~Ls~-N~l~~ip~~-------~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-~l~~l~~L~~  570 (636)
T 4eco_A          503 LS---DDFRATTLPYLVGIDLSY-NSFSKFPTQ-------PLNSSTLKGFGIRNQRDAQGNRTLREWPE-GITLCPSLTQ  570 (636)
T ss_dssp             CC---GGGSTTTCTTCCEEECCS-SCCSSCCCG-------GGGCSSCCEEECCSCBCTTCCBCCCCCCT-TGGGCSSCCE
T ss_pred             cC---hhhhhccCCCcCEEECCC-CCCCCcChh-------hhcCCCCCEEECCCCcccccCcccccChH-HHhcCCCCCE
Confidence            43   2233  889999999999 677765432       567999999999653     233333232 4578999999


Q ss_pred             EEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCc
Q 005744          563 VKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQL  608 (679)
Q Consensus       563 L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L  608 (679)
                      |++++|. +..++..               .+++|+.|+|+++|-.
T Consensus       571 L~Ls~N~-l~~ip~~---------------~~~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          571 LQIGSND-IRKVNEK---------------ITPNISVLDIKDNPNI  600 (636)
T ss_dssp             EECCSSC-CCBCCSC---------------CCTTCCEEECCSCTTC
T ss_pred             EECCCCc-CCccCHh---------------HhCcCCEEECcCCCCc
Confidence            9999984 5777632               3489999999998633

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=3e-29  Score=284.71  Aligned_cols=342  Identities=13%  Similarity=0.169  Sum_probs=272.3

Q ss_pred             CCccc-CCcceeeeeeccCCccc-----------------CCCchh-hcCCCCccEEEeCCCcCC-cCCccccCCcCCCE
Q 005744          225 LPERL-GFLKLKLFLFFTENLSL-----------------QIPDPF-FEGMTELRVLDLTGFRFH-SLPSSLGCLINLRT  284 (679)
Q Consensus       225 l~~~~-~~~~L~~L~l~~~~~~~-----------------~~~~~~-~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~  284 (679)
                      +|..+ .+++|++|++++|.+.+                 .+|..+ |.++++|++|++++|.+. .+|..++++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            66666 89999999999999987                 388876 349999999999999865 78999999999999


Q ss_pred             EEcCCcc-cCC---cccccCCC-------CCcEEEecCCCCCccch--hhhcCCCCCEEcccCCccccccCcccccCCCC
Q 005744          285 LSLENCL-VVD---VAIIGDLK-------KLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR  351 (679)
Q Consensus       285 L~L~~~~-~~~---~~~i~~L~-------~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~  351 (679)
                      |++++|. +..   |..++++.       +|++|++++|.++.+|.  .++++++|++|++++ +.++.+| . ++++++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~-N~l~~lp-~-~~~L~~  596 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH-NKVRHLE-A-FGTNVK  596 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTT-SCCCBCC-C-CCTTSE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCC-CCcccch-h-hcCCCc
Confidence            9999998 663   66666555       99999999999999999  899999999999999 5677888 3 999999


Q ss_pred             CcEEEccCCcccceeccCCcCChhhhhcCCC-CceEEeecCCCccCCccc---cccccceeEEEeCCcccCCC-------
Q 005744          352 LEELYMGNSFTQWKVEGQSNASLGELKQLSR-LTTLEVHIPDAQVMPQDL---VFVELERFRICIGDVWSWSD-------  420 (679)
Q Consensus       352 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~-------  420 (679)
                      |+.|++++|.+.        ..+..+.++++ |+.|++++|.+..+|..+   ...+|+.|++..+......+       
T Consensus       597 L~~L~Ls~N~l~--------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~  668 (876)
T 4ecn_A          597 LTDLKLDYNQIE--------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD  668 (876)
T ss_dssp             ESEEECCSSCCS--------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred             ceEEECcCCccc--------cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence            999999999875        23345788888 999999999999888776   23459999998776533221       


Q ss_pred             --CCCCcceEEecCCCcceechhHHHHhhcccccccccccCcccccccccc-----hhhccccceEeeecCCCeeEEEeC
Q 005744          421 --GYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDD-----EEGFARLRHLHVHNGPEILHILNS  493 (679)
Q Consensus       421 --~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~l~~~~~~  493 (679)
                        ...+|+.|+|+++....+|.++...+++|+.|++++|... .+|.....     ..++++|++|+|++|. +..++  
T Consensus       669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp--  744 (876)
T 4ecn_A          669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLS--  744 (876)
T ss_dssp             TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCC--
T ss_pred             cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC-Cccch--
Confidence              2348999999999998999888766899999999998654 66665421     1245599999999995 44443  


Q ss_pred             CCccc--cccccceeeccccccccccccCcccCCCCccccCCccEEEEecC-----CCccccccHHHHHHhhcCcEEEEc
Q 005744          494 DGRVG--TFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGC-----HRVKHLFPFSLVKNLLQLQKVKVT  566 (679)
Q Consensus       494 ~~~~~--~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c-----~~L~~l~~~~~~~~l~~L~~L~i~  566 (679)
                       ....  .+++|+.|++++ +.++.++..       ...+++|+.|+++++     +++....| ..+..+++|++|+++
T Consensus       745 -~~l~~~~l~~L~~L~Ls~-N~L~~lp~~-------l~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~l~~L~~L~~L~Ls  814 (876)
T 4ecn_A          745 -DDFRATTLPYLSNMDVSY-NCFSSFPTQ-------PLNSSQLKAFGIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIG  814 (876)
T ss_dssp             -GGGSTTTCTTCCEEECCS-SCCSSCCCG-------GGGCTTCCEEECCCCBCTTCCBCCCCCC-TTGGGCSSCCEEECC
T ss_pred             -HHhhhccCCCcCEEEeCC-CCCCccchh-------hhcCCCCCEEECCCCCCcccccccccCh-HHHhcCCCCCEEECC
Confidence             2233  789999999999 577765432       568999999999873     23333323 246789999999999


Q ss_pred             ccccchhhhccccccccCCCCccccccccccceeeccCCCC
Q 005744          567 DCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQ  607 (679)
Q Consensus       567 ~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~  607 (679)
                      +|. +..+|..               .+++|+.|+|++||-
T Consensus       815 ~N~-L~~Ip~~---------------l~~~L~~LdLs~N~l  839 (876)
T 4ecn_A          815 SND-IRKVDEK---------------LTPQLYILDIADNPN  839 (876)
T ss_dssp             SSC-CCBCCSC---------------CCSSSCEEECCSCTT
T ss_pred             CCC-CCccCHh---------------hcCCCCEEECCCCCC
Confidence            984 5777642               347999999999873

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=2.4e-28  Score=282.23  Aligned_cols=423  Identities=15%  Similarity=0.116  Sum_probs=285.4

Q ss_pred             eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCc-CCcC-CccccCCcCCCEEEcCCc
Q 005744          213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR-FHSL-PSSLGCLINLRTLSLENC  290 (679)
Q Consensus       213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l-p~~i~~l~~L~~L~L~~~  290 (679)
                      +..+.+++.+..+|.  -.+++++|++++|.+.+..|.. |.++++|++|++++|. +..+ |..++++++|++|+|++|
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            567888899999998  6789999999999988555554 5999999999999995 4566 788999999999999999


Q ss_pred             ccCC--cccccCCCCCcEEEecCCCCCc-cchh--hhcCCCCCEEcccCCcccccc-CcccccCCCCCcEEEccCCcccc
Q 005744          291 LVVD--VAIIGDLKKLEILSLKHSSIEQ-LPRE--IGQLTCLKLLDLSNCSKLKEI-RPNVISNLTRLEELYMGNSFTQW  364 (679)
Q Consensus       291 ~~~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~~l~~l~~L~~L~l~~~~~~~  364 (679)
                      .+..  |..|+++++|++|++++|.++. +|..  ++++++|++|++++| .+..+ ++..++++++|++|++++|.+..
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCe
Confidence            9987  7899999999999999999985 5655  899999999999994 55555 33458999999999999997753


Q ss_pred             eeccCCcCChhhhhcC--CCCceEEeecCCCccC-Cccc-cc------cccceeEEEeCCccc-----------------
Q 005744          365 KVEGQSNASLGELKQL--SRLTTLEVHIPDAQVM-PQDL-VF------VELERFRICIGDVWS-----------------  417 (679)
Q Consensus       365 ~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~-~~~~-~~------~~L~~L~l~~~~~~~-----------------  417 (679)
                      .       ....+..+  ++|+.|+++.|.+... +..+ .+      ..|+.|++..+....                 
T Consensus       163 ~-------~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~  235 (844)
T 3j0a_A          163 V-------CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS  235 (844)
T ss_dssp             C-------CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSE
T ss_pred             e-------CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccc
Confidence            2       22344444  7999999998876542 2222 22      248888886552110                 


Q ss_pred             -----------------------CCCC--CCCcceEEecCCCcceechhHHHHhhcccccccccccCcccccccccchhh
Q 005744          418 -----------------------WSDG--YETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEG  472 (679)
Q Consensus       418 -----------------------~~~~--~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  472 (679)
                                             .+..  .++++.|+++++.....+......+++|+.|++++|......+..+   .+
T Consensus       236 L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---~~  312 (844)
T 3j0a_A          236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF---YG  312 (844)
T ss_dssp             EECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT---TT
T ss_pred             eecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh---cC
Confidence                                   0011  2567788888776665544333346788888888877655556566   67


Q ss_pred             ccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHH
Q 005744          473 FARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFS  552 (679)
Q Consensus       473 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~  552 (679)
                      +++|++|++++|.. ..+.  ...+..+++|++|++++ +.+..++...      ...+++|+.|+++++ .++.++.  
T Consensus       313 l~~L~~L~Ls~N~l-~~~~--~~~~~~l~~L~~L~L~~-N~i~~~~~~~------~~~l~~L~~L~Ls~N-~l~~i~~--  379 (844)
T 3j0a_A          313 LDNLQVLNLSYNLL-GELY--SSNFYGLPKVAYIDLQK-NHIAIIQDQT------FKFLEKLQTLDLRDN-ALTTIHF--  379 (844)
T ss_dssp             CSSCCEEEEESCCC-SCCC--SCSCSSCTTCCEEECCS-CCCCCCCSSC------SCSCCCCCEEEEETC-CSCCCSS--
T ss_pred             CCCCCEEECCCCCC-CccC--HHHhcCCCCCCEEECCC-CCCCccChhh------hcCCCCCCEEECCCC-CCCcccC--
Confidence            88888888888752 2221  12345788888888888 4666655433      346788888888884 5666532  


Q ss_pred             HHHHhhcCcEEEEcccccchhhhccccccc---cCCC------CccccccccccceeeccCCCCccccccCCC---CC--
Q 005744          553 LVKNLLQLQKVKVTDCTNLKLIVGKESENS---AHKN------GSISGVYFRKLHFLKLQHLPQLTSSGFDLE---TP--  618 (679)
Q Consensus       553 ~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~---~~~~------~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~---~p--  618 (679)
                          +++|+.|++++| .+..++.......   ...+      ....+..+++|++|+++++ ++..++....   .+  
T Consensus       380 ----~~~L~~L~l~~N-~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L  453 (844)
T 3j0a_A          380 ----IPSIPDIFLSGN-KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSL  453 (844)
T ss_dssp             ----CCSCSEEEEESC-CCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTC
T ss_pred             ----CCCcchhccCCC-CcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCC-cccccccccccccCCcc
Confidence                677888888776 3444432210000   0000      0001235777777777765 3443322110   01  


Q ss_pred             ---------------------cccCCCCCccccCCCCCCCccCccc-cccCCCcceeeccccccccccCCCcc
Q 005744          619 ---------------------TNTQGSNPGIIAEGDPKDFTSLFNE-RVVFPSLKKLKLSSINVEKIWLNSFS  669 (679)
Q Consensus       619 ---------------------~l~~~~~l~~~~~~~~~~l~~~~~~-~~~~p~L~~L~l~~~~l~~l~~~~~~  669 (679)
                                           .+..++.++.+....+ .+..++.. ...+++|+.|++++|+++.+|.+.++
T Consensus       454 ~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  525 (844)
T 3j0a_A          454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP  525 (844)
T ss_dssp             CBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred             ccccCCCCccccccccccchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence                                 1223344444444433 23334333 34578888888888888888888775

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=3.9e-29  Score=273.88  Aligned_cols=417  Identities=14%  Similarity=0.110  Sum_probs=247.2

Q ss_pred             cchhhhhhhhcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccc
Q 005744          199 ADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSL  276 (679)
Q Consensus       199 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i  276 (679)
                      +.++.+|....+++++|++++|.+..++. .+ .+++|++|++++|.+.+..|. .|.++++|++|++++|.++.+|.. 
T Consensus        10 n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~-   87 (520)
T 2z7x_B           10 NGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSHNKLVKISCH-   87 (520)
T ss_dssp             SCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCSSCCCEEECC-
T ss_pred             CCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecCCCceeecCcc-
Confidence            44556666556899999999999988874 34 899999999999998854454 459999999999999999999877 


Q ss_pred             cCCcCCCEEEcCCcccCC---cccccCCCCCcEEEecCCCCCccchhhhcCCCC--CEEcccCCcc--ccccCcccccC-
Q 005744          277 GCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCL--KLLDLSNCSK--LKEIRPNVISN-  348 (679)
Q Consensus       277 ~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L--~~L~l~~~~~--l~~lp~~~l~~-  348 (679)
                       .+++|++|++++|.+..   |..++++++|++|++++|.++.  ..+..+++|  ++|++++|..  ....|.. ++. 
T Consensus        88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l  163 (520)
T 2z7x_B           88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDF  163 (520)
T ss_dssp             -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTC
T ss_pred             -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-cccc
Confidence             89999999999999876   5899999999999999999886  457888888  9999998543  2333322 443 


Q ss_pred             -------------------------CCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCcc-----CCc
Q 005744          349 -------------------------LTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV-----MPQ  398 (679)
Q Consensus       349 -------------------------l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~  398 (679)
                                               +++|+.|++++|....... .....+..+..+++|+.|+++.+.+..     ++.
T Consensus       164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~  242 (520)
T 2z7x_B          164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS-YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ  242 (520)
T ss_dssp             CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-HHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH
T ss_pred             ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc-eeecchhhhccccchhhccccccccCHHHHHHHHH
Confidence                                     4455555555442000000 000122345566666666666554321     111


Q ss_pred             cccccccceeEEEeCC----cccCC-----CCCCCcceEEecCCCcceec-hhHHHHh--hcccccccccccCccccccc
Q 005744          399 DLVFVELERFRICIGD----VWSWS-----DGYETSKTLKLQLNNSTYLG-YGMKMLL--KRTEDLHLDELAGFKNVVHE  466 (679)
Q Consensus       399 ~~~~~~L~~L~l~~~~----~~~~~-----~~~~~l~~L~L~~~~~~~~~-~~~~~~l--~~L~~L~l~~~~~~~~~~~~  466 (679)
                      ....++|+.|++..+.    .+..+     ..++.|+.++++.+.. .+| .++...+  .+|+.|++++|.... .+. 
T Consensus       243 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~~-  319 (520)
T 2z7x_B          243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVH-MLC-  319 (520)
T ss_dssp             HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCC-CCC-
T ss_pred             HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccc-ccc-
Confidence            1123466777665443    22333     5556666666666555 444 3444332  236666666654322 110 


Q ss_pred             ccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCcc
Q 005744          467 LDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVK  546 (679)
Q Consensus       467 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~  546 (679)
                      +   ..+++|++|++++|.....+   ......+++|++|++++ ++++.++...    ...+.+++|+.|++++| .++
T Consensus       320 ~---~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~-N~l~~l~~~~----~~~~~l~~L~~L~Ls~N-~l~  387 (520)
T 2z7x_B          320 P---SKISPFLHLDFSNNLLTDTV---FENCGHLTELETLILQM-NQLKELSKIA----EMTTQMKSLQQLDISQN-SVS  387 (520)
T ss_dssp             C---SSCCCCCEEECCSSCCCTTT---TTTCCCCSSCCEEECCS-SCCCBHHHHH----HHHTTCTTCCEEECCSS-CCB
T ss_pred             h---hhCCcccEEEeECCccChhh---hhhhccCCCCCEEEccC-CccCccccch----HHHhhCCCCCEEECCCC-cCC
Confidence            1   34666667776666421111   12234566666666666 3444322100    01235666666666664 344


Q ss_pred             c-cccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccc-cccceeeccCCCCccccccCCCCCcccCCC
Q 005744          547 H-LFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYF-RKLHFLKLQHLPQLTSSGFDLETPTNTQGS  624 (679)
Q Consensus       547 ~-l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~  624 (679)
                      . ++ ...+..+++|++|++++|.--..++.                .+ ++|+.|++++| +++.++...     ..++
T Consensus       388 ~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~----------------~l~~~L~~L~Ls~N-~l~~ip~~~-----~~l~  444 (520)
T 2z7x_B          388 YDEK-KGDCSWTKSLLSLNMSSNILTDTIFR----------------CLPPRIKVLDLHSN-KIKSIPKQV-----VKLE  444 (520)
T ss_dssp             CCGG-GCSCCCCTTCCEEECCSSCCCGGGGG----------------SCCTTCCEEECCSS-CCCCCCGGG-----GGCT
T ss_pred             cccc-cchhccCccCCEEECcCCCCCcchhh----------------hhcccCCEEECCCC-cccccchhh-----hcCC
Confidence            4 42 22234456666666666632222221                12 56666666665 455544432     2334


Q ss_pred             CCccccCCCCCCCccCccc-cccCCCcceeeccccccc
Q 005744          625 NPGIIAEGDPKDFTSLFNE-RVVFPSLKKLKLSSINVE  661 (679)
Q Consensus       625 ~l~~~~~~~~~~l~~~~~~-~~~~p~L~~L~l~~~~l~  661 (679)
                      .++.+...++ .+..++.. ...+++|+.|++++|.+.
T Consensus       445 ~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          445 ALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCc
Confidence            4455554443 23344433 334566666766666543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.96  E-value=3e-28  Score=262.50  Aligned_cols=349  Identities=18%  Similarity=0.236  Sum_probs=277.4

Q ss_pred             hhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEE
Q 005744          207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS  286 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  286 (679)
                      ....+++.++++++.+..++....+++|++|++++|.+. .++.  +.++++|++|++++|.++.++. ++++++|++|+
T Consensus        43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~  118 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT  118 (466)
T ss_dssp             HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred             hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence            346789999999999998887568999999999999887 4454  6899999999999999998877 99999999999


Q ss_pred             cCCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccccee
Q 005744          287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV  366 (679)
Q Consensus       287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~  366 (679)
                      +++|.+...+.++++++|++|++++|.++.+|. ++.+++|++|++.+  .+..+++  ++++++|++|++++|.+.   
T Consensus       119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~---  190 (466)
T 1o6v_A          119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVS---  190 (466)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred             CCCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCC---
Confidence            999999884459999999999999999998874 89999999999964  4555554  889999999999999763   


Q ss_pred             ccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCccc--CCCCCCCcceEEecCCCcceechhHHH
Q 005744          367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWS--WSDGYETSKTLKLQLNNSTYLGYGMKM  444 (679)
Q Consensus       367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~l~~L~L~~~~~~~~~~~~~~  444 (679)
                            .+..+..+++|+.|++++|.+...+....+++|+.|++..+....  .+..+++|+.|+++++.....+. +. 
T Consensus       191 ------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~-  262 (466)
T 1o6v_A          191 ------DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LS-  262 (466)
T ss_dssp             ------CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GT-
T ss_pred             ------CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hh-
Confidence                  234688899999999999988877664478899999997765432  45667889999999887766654 33 


Q ss_pred             HhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccC
Q 005744          445 LLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRL  524 (679)
Q Consensus       445 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~  524 (679)
                      .+++|+.|++++|... .++. +   ..+++|++|++++|. +..+    .....+++|+.|++++| .+..+..     
T Consensus       263 ~l~~L~~L~l~~n~l~-~~~~-~---~~l~~L~~L~L~~n~-l~~~----~~~~~l~~L~~L~L~~n-~l~~~~~-----  326 (466)
T 1o6v_A          263 GLTKLTELKLGANQIS-NISP-L---AGLTALTNLELNENQ-LEDI----SPISNLKNLTYLTLYFN-NISDISP-----  326 (466)
T ss_dssp             TCTTCSEEECCSSCCC-CCGG-G---TTCTTCSEEECCSSC-CSCC----GGGGGCTTCSEEECCSS-CCSCCGG-----
T ss_pred             cCCCCCEEECCCCccC-cccc-c---cCCCccCeEEcCCCc-ccCc----hhhcCCCCCCEEECcCC-cCCCchh-----
Confidence            3688999999988654 3333 4   778999999999886 3222    23568899999999985 5655432     


Q ss_pred             CCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccC
Q 005744          525 NEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQH  604 (679)
Q Consensus       525 ~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  604 (679)
                         ...+++|+.|++++| +++.++   .+..+++|+.|++++|. +..++              .+..+++|+.|++.+
T Consensus       327 ---~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~-l~~~~--------------~~~~l~~L~~L~l~~  384 (466)
T 1o6v_A          327 ---VSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQ-ISDLT--------------PLANLTRITQLGLND  384 (466)
T ss_dssp             ---GGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC-CCBCG--------------GGTTCTTCCEEECCC
T ss_pred             ---hccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCc-cCccc--------------hhhcCCCCCEEeccC
Confidence               457899999999986 677763   45688999999999884 44443              245899999999998


Q ss_pred             CCCccccccC
Q 005744          605 LPQLTSSGFD  614 (679)
Q Consensus       605 cp~L~~l~~~  614 (679)
                      |+ +..+|..
T Consensus       385 n~-~~~~p~~  393 (466)
T 1o6v_A          385 QA-WTNAPVN  393 (466)
T ss_dssp             EE-EECCCBC
T ss_pred             Cc-ccCCchh
Confidence            74 5555543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=9.5e-28  Score=269.89  Aligned_cols=440  Identities=18%  Similarity=0.132  Sum_probs=263.1

Q ss_pred             ecccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC
Q 005744          196 QNVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP  273 (679)
Q Consensus       196 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp  273 (679)
                      +.+..++.+|...+.++++|++++|.++.+++. + ++++|++|++++|.+. .++++.|.++++|++|+|++|+++.+|
T Consensus        38 c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~  116 (635)
T 4g8a_A           38 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLA  116 (635)
T ss_dssp             CTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             CCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCC
Confidence            445677888888888999999999999999864 4 8999999999999987 577777799999999999999999987


Q ss_pred             c-cccCCcCCCEEEcCCcccCC-c-ccccCCCCCcEEEecCCCCCc--cchhhhcCCCCCEEcccCCccccccCcccccC
Q 005744          274 S-SLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISN  348 (679)
Q Consensus       274 ~-~i~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~  348 (679)
                      . .|.++++|++|++++|.+.. + ..|+++++|++|++++|.++.  +|..++.+++|++|++++ +.++.+++..+..
T Consensus       117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~  195 (635)
T 4g8a_A          117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRV  195 (635)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHH
T ss_pred             HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC-ccccccccccccc
Confidence            5 58999999999999999988 4 569999999999999999874  578899999999999999 6777776665655


Q ss_pred             CCCCc----EEEccCCcccceeccCC-----------------cCChhhhhcCCCCceEEeecCCC--------------
Q 005744          349 LTRLE----ELYMGNSFTQWKVEGQS-----------------NASLGELKQLSRLTTLEVHIPDA--------------  393 (679)
Q Consensus       349 l~~L~----~L~l~~~~~~~~~~~~~-----------------~~~~~~l~~l~~L~~L~l~~~~~--------------  393 (679)
                      +.+++    .++++.+.+.....+..                 ......+..+..++...+..+..              
T Consensus       196 L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~  275 (635)
T 4g8a_A          196 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL  275 (635)
T ss_dssp             HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred             hhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence            54443    45565554432211100                 00001122333333332221100              


Q ss_pred             ----------------c----cCCccc-cccccceeEEEeCCcc--cCCCCCCCcceEEecCCCcceechhH--------
Q 005744          394 ----------------Q----VMPQDL-VFVELERFRICIGDVW--SWSDGYETSKTLKLQLNNSTYLGYGM--------  442 (679)
Q Consensus       394 ----------------~----~~~~~~-~~~~L~~L~l~~~~~~--~~~~~~~~l~~L~L~~~~~~~~~~~~--------  442 (679)
                                      .    ...... ...+++.+.+......  ..+.....++.+.+..+.....+...        
T Consensus       276 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~  355 (635)
T 4g8a_A          276 EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT  355 (635)
T ss_dssp             GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEE
T ss_pred             ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcc
Confidence                            0    000000 1223333333222111  11222334444444433222111100        


Q ss_pred             -----------HHHhhcccccccccccCccc--ccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeecc
Q 005744          443 -----------KMLLKRTEDLHLDELAGFKN--VVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLH  509 (679)
Q Consensus       443 -----------~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~  509 (679)
                                 ...+++|+.|+++++.....  .+..+   ..+.+|+++++..+... .+   ......+++|+.+.+.
T Consensus       356 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~---~~~~~L~~L~~~~~~~~-~~---~~~~~~l~~L~~l~l~  428 (635)
T 4g8a_A          356 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD---FGTISLKYLDLSFNGVI-TM---SSNFLGLEQLEHLDFQ  428 (635)
T ss_dssp             EESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHH---HSCSCCCEEECCSCSEE-EE---CSCCTTCTTCCEEECT
T ss_pred             cccccCCCCcccccccccccchhhccccccccccccch---hhhhhhhhhhccccccc-cc---cccccccccccchhhh
Confidence                       00134555555555433211  11111   33455555555554321 11   1223456677777776


Q ss_pred             ccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCcc
Q 005744          510 NLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSI  589 (679)
Q Consensus       510 ~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~  589 (679)
                      .++.....+...      ...+++|+.++++.+ .+...++ .....+++|++|++++|.....+...            
T Consensus       429 ~~~~~~~~~~~~------~~~l~~l~~l~ls~n-~l~~~~~-~~~~~~~~L~~L~Ls~N~~~~~~~~~------------  488 (635)
T 4g8a_A          429 HSNLKQMSEFSV------FLSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPD------------  488 (635)
T ss_dssp             TSEEESTTSSCT------TTTCTTCCEEECTTS-CCEECCT-TTTTTCTTCCEEECTTCEEGGGEECS------------
T ss_pred             hccccccccccc------ccccccccccccccc-ccccccc-cccccchhhhhhhhhhcccccccCch------------
Confidence            644433322222      235667777777663 4554433 23456677777777777655544321            


Q ss_pred             ccccccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCccc-cccCCCcceeeccccccccccCCCc
Q 005744          590 SGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNE-RVVFPSLKKLKLSSINVEKIWLNSF  668 (679)
Q Consensus       590 ~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~-~~~~p~L~~L~l~~~~l~~l~~~~~  668 (679)
                      .+..+++|++|+|++| +++.++...    +..+++++.+....+ .+..++.. ...+++|+.|++++|+++.++++.+
T Consensus       489 ~~~~l~~L~~L~Ls~N-~L~~l~~~~----f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  562 (635)
T 4g8a_A          489 IFTELRNLTFLDLSQC-QLEQLSPTA----FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  562 (635)
T ss_dssp             CCTTCTTCCEEECTTS-CCCEECTTT----TTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred             hhhhccccCEEECCCC-ccCCcChHH----HcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence            3557777888888776 566654332    234555666665554 34444332 3456788888888888888877766


Q ss_pred             cc
Q 005744          669 SA  670 (679)
Q Consensus       669 ~~  670 (679)
                      ..
T Consensus       563 ~~  564 (635)
T 4g8a_A          563 QH  564 (635)
T ss_dssp             TC
T ss_pred             Hh
Confidence            43

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=1e-28  Score=272.54  Aligned_cols=156  Identities=17%  Similarity=0.205  Sum_probs=134.7

Q ss_pred             hhcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCc--CCccccCCcCC
Q 005744          207 KIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS--LPSSLGCLINL  282 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L  282 (679)
                      ...+++++|++++|.+..++. .+ .+++|++|++++|.+. .++...|+++++|++|++++|.++.  .|..++++++|
T Consensus        47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  125 (549)
T 2z81_A           47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL  125 (549)
T ss_dssp             SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence            567899999999999987774 34 8999999999999987 5666666999999999999999985  47789999999


Q ss_pred             CEEEcCCcccC-C-c-ccccCCCCCcEEEecCCCCCc-cchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEcc
Q 005744          283 RTLSLENCLVV-D-V-AIIGDLKKLEILSLKHSSIEQ-LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG  358 (679)
Q Consensus       283 ~~L~L~~~~~~-~-~-~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~  358 (679)
                      ++|++++|... . + ..++++++|++|++++|.++. .|..++++++|++|++++ +....+|...++.+++|++|+++
T Consensus       126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~  204 (549)
T 2z81_A          126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL-SESAFLLEIFADILSSVRYLELR  204 (549)
T ss_dssp             CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC-SBSTTHHHHHHHSTTTBSEEEEE
T ss_pred             cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc-CcccccchhhHhhcccccEEEcc
Confidence            99999999844 4 3 689999999999999999985 688899999999999998 55677776655679999999999


Q ss_pred             CCcccc
Q 005744          359 NSFTQW  364 (679)
Q Consensus       359 ~~~~~~  364 (679)
                      +|.+..
T Consensus       205 ~n~l~~  210 (549)
T 2z81_A          205 DTNLAR  210 (549)
T ss_dssp             SCBCTT
T ss_pred             CCcccc
Confidence            987754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=3.1e-28  Score=262.12  Aligned_cols=372  Identities=18%  Similarity=0.181  Sum_probs=260.2

Q ss_pred             ecccchhhhhhhhcCCCeEEEccCCCcccC-Cccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-
Q 005744          196 QNVADLKEELDKIDEAPTAISIPFRGIYEL-PERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-  272 (679)
Q Consensus       196 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-  272 (679)
                      ..+..+..+|. .++++++|++++|.+..+ |..+ .+++|++|++++|.+.+.++...|.++++|++|++++|.++.+ 
T Consensus        17 c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~   95 (455)
T 3v47_A           17 CINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE   95 (455)
T ss_dssp             CCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC
T ss_pred             cCCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC
Confidence            34455666665 668899999999999776 4444 8999999999999887778777779999999999999999876 


Q ss_pred             CccccCCcCCCEEEcCCcccCC--ccc--ccCCCCCcEEEecCCCCCcc-chh-hhcCCCCCEEcccCCccccccCcccc
Q 005744          273 PSSLGCLINLRTLSLENCLVVD--VAI--IGDLKKLEILSLKHSSIEQL-PRE-IGQLTCLKLLDLSNCSKLKEIRPNVI  346 (679)
Q Consensus       273 p~~i~~l~~L~~L~L~~~~~~~--~~~--i~~L~~L~~L~l~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~l~~lp~~~l  346 (679)
                      |..++++++|++|++++|.+..  +..  ++++++|++|++++|.++.+ |.. ++++++|++|++++ +.++.+++..+
T Consensus        96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l  174 (455)
T 3v47_A           96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF-NKVKSICEEDL  174 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT-CCBSCCCTTTS
T ss_pred             hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC-CcccccChhhh
Confidence            7889999999999999999987  444  89999999999999999877 544 78999999999999 56666665556


Q ss_pred             cCC--CCCcEEEccCCcccceeccCCc-CChhhhhcCCCCceEEeecCCCccCC-ccc----cccccceeEEEeCCcccC
Q 005744          347 SNL--TRLEELYMGNSFTQWKVEGQSN-ASLGELKQLSRLTTLEVHIPDAQVMP-QDL----VFVELERFRICIGDVWSW  418 (679)
Q Consensus       347 ~~l--~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~----~~~~L~~L~l~~~~~~~~  418 (679)
                      ..+  .+|+.|+++++.+......... .....+..+++|+.|++++|.+.... ..+    ...+|+.|++..+.....
T Consensus       175 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  254 (455)
T 3v47_A          175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS  254 (455)
T ss_dssp             GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred             hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc
Confidence            665  6899999998876532211000 00122345678999999988775322 222    236677776654432211


Q ss_pred             CCCCCCcceEEecCCCcceechhHHH-HhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCcc
Q 005744          419 SDGYETSKTLKLQLNNSTYLGYGMKM-LLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRV  497 (679)
Q Consensus       419 ~~~~~~l~~L~L~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  497 (679)
                      ......+...     .    +..+.. ..++|+.|++++|......+..+   ..+++|++|++++|. +..+.  ...+
T Consensus       255 ~~~~~~~~~~-----~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~--~~~~  319 (455)
T 3v47_A          255 SFGHTNFKDP-----D----NFTFKGLEASGVKTCDLSKSKIFALLKSVF---SHFTDLEQLTLAQNE-INKID--DNAF  319 (455)
T ss_dssp             CTTCCSSCCC-----C----TTTTGGGTTSCCCEEECCSSCCCEECTTTT---TTCTTCCEEECTTSC-CCEEC--TTTT
T ss_pred             ccchhhhccC-----c----ccccccccccCceEEEecCccccccchhhc---ccCCCCCEEECCCCc-ccccC--hhHh
Confidence            1000000000     0    000110 13578888888887766666666   778889999998885 33332  2234


Q ss_pred             ccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhcc
Q 005744          498 GTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGK  577 (679)
Q Consensus       498 ~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~  577 (679)
                      ..+++|++|++++ +.++.+....      .+.+++|++|++++| +++.+++ ..+..+++|++|++++| .++.++..
T Consensus       320 ~~l~~L~~L~Ls~-N~l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~  389 (455)
T 3v47_A          320 WGLTHLLKLNLSQ-NFLGSIDSRM------FENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTN-QLKSVPDG  389 (455)
T ss_dssp             TTCTTCCEEECCS-SCCCEECGGG------GTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred             cCcccCCEEECCC-CccCCcChhH------hcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCC-ccccCCHh
Confidence            5788899999988 4666654333      347888999999885 6777644 34577889999999887 56665532


Q ss_pred             ccccccCCCCccccccccccceeeccCCC
Q 005744          578 ESENSAHKNGSISGVYFRKLHFLKLQHLP  606 (679)
Q Consensus       578 ~~~~~~~~~~~~~l~~l~~L~~L~l~~cp  606 (679)
                                  .+..+++|++|+++++|
T Consensus       390 ------------~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          390 ------------IFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             ------------TTTTCTTCCEEECCSSC
T ss_pred             ------------HhccCCcccEEEccCCC
Confidence                        35578899999998865

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.96  E-value=2.4e-27  Score=255.50  Aligned_cols=348  Identities=19%  Similarity=0.241  Sum_probs=229.9

Q ss_pred             CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCCcccccCCCCCcEEEe
Q 005744          230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL  309 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l  309 (679)
                      .+++++.|.+.++.+. .+|.  +..+++|++|++++|.++.+|. +.++++|++|++++|.+.....++++++|++|++
T Consensus        44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L  119 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL  119 (466)
T ss_dssp             HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEEC
Confidence            4788999999998876 5664  5889999999999999999987 9999999999999999998333999999999999


Q ss_pred             cCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEee
Q 005744          310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH  389 (679)
Q Consensus       310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  389 (679)
                      ++|.++.+|. +.++++|++|++++ +.+..++.  ++.+++|++|+++++ .         .....+.++++|+.|+++
T Consensus       120 ~~n~l~~~~~-~~~l~~L~~L~l~~-n~l~~~~~--~~~l~~L~~L~l~~~-~---------~~~~~~~~l~~L~~L~l~  185 (466)
T 1o6v_A          120 FNNQITDIDP-LKNLTNLNRLELSS-NTISDISA--LSGLTSLQQLSFGNQ-V---------TDLKPLANLTTLERLDIS  185 (466)
T ss_dssp             CSSCCCCCGG-GTTCTTCSEEEEEE-EEECCCGG--GTTCTTCSEEEEEES-C---------CCCGGGTTCTTCCEEECC
T ss_pred             CCCCCCCChH-HcCCCCCCEEECCC-CccCCChh--hccCCcccEeecCCc-c---------cCchhhccCCCCCEEECc
Confidence            9999999986 99999999999999 56777764  899999999998643 2         123458899999999999


Q ss_pred             cCCCccCCccccccccceeEEEeCCccc--CCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCcccccccc
Q 005744          390 IPDAQVMPQDLVFVELERFRICIGDVWS--WSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHEL  467 (679)
Q Consensus       390 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  467 (679)
                      +|.+..++....+++|+.|++..+....  .+..+++|+.|+++++.....+ .+.. +++|+.|++++|..... +. +
T Consensus       186 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~-l~~L~~L~l~~n~l~~~-~~-~  261 (466)
T 1o6v_A          186 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLAS-LTNLTDLDLANNQISNL-AP-L  261 (466)
T ss_dssp             SSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGG-CTTCSEEECCSSCCCCC-GG-G
T ss_pred             CCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhc-CCCCCEEECCCCccccc-hh-h
Confidence            9988876554467777777776554322  1334555666666655444332 2222 45566666665543222 21 2


Q ss_pred             cchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccc
Q 005744          468 DDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKH  547 (679)
Q Consensus       468 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~  547 (679)
                         ..+++|++|++++|.. ..+    .....+++|++|++++ +.++.++.        .+.+++|+.|++++| +++.
T Consensus       262 ---~~l~~L~~L~l~~n~l-~~~----~~~~~l~~L~~L~L~~-n~l~~~~~--------~~~l~~L~~L~L~~n-~l~~  323 (466)
T 1o6v_A          262 ---SGLTKLTELKLGANQI-SNI----SPLAGLTALTNLELNE-NQLEDISP--------ISNLKNLTYLTLYFN-NISD  323 (466)
T ss_dssp             ---TTCTTCSEEECCSSCC-CCC----GGGTTCTTCSEEECCS-SCCSCCGG--------GGGCTTCSEEECCSS-CCSC
T ss_pred             ---hcCCCCCEEECCCCcc-Ccc----ccccCCCccCeEEcCC-CcccCchh--------hcCCCCCCEEECcCC-cCCC
Confidence               4556666666665531 111    1134555666666655 33433321        235556666666554 3444


Q ss_pred             cccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCc
Q 005744          548 LFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPG  627 (679)
Q Consensus       548 l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~  627 (679)
                      +++   +..+++|++|++++| .+..++              .+..+++|+.|++++|+ +..++               
T Consensus       324 ~~~---~~~l~~L~~L~l~~n-~l~~~~--------------~l~~l~~L~~L~l~~n~-l~~~~---------------  369 (466)
T 1o6v_A          324 ISP---VSSLTKLQRLFFYNN-KVSDVS--------------SLANLTNINWLSAGHNQ-ISDLT---------------  369 (466)
T ss_dssp             CGG---GGGCTTCCEEECCSS-CCCCCG--------------GGTTCTTCCEEECCSSC-CCBCG---------------
T ss_pred             chh---hccCccCCEeECCCC-ccCCch--------------hhccCCCCCEEeCCCCc-cCccc---------------
Confidence            432   345556666666555 333332              23355566666665542 22211               


Q ss_pred             cccCCCCCCCccCccccccCCCcceeeccccccccccCC
Q 005744          628 IIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLN  666 (679)
Q Consensus       628 ~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~  666 (679)
                                    + ...+++|+.|++++|.++.+|..
T Consensus       370 --------------~-~~~l~~L~~L~l~~n~~~~~p~~  393 (466)
T 1o6v_A          370 --------------P-LANLTRITQLGLNDQAWTNAPVN  393 (466)
T ss_dssp             --------------G-GTTCTTCCEEECCCEEEECCCBC
T ss_pred             --------------h-hhcCCCCCEEeccCCcccCCchh
Confidence                          1 33457778888888777776543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=1.2e-27  Score=264.25  Aligned_cols=402  Identities=15%  Similarity=0.130  Sum_probs=198.8

Q ss_pred             eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcc
Q 005744          213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL  291 (679)
Q Consensus       213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~  291 (679)
                      ++++++++.+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus        34 ~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  111 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDLP-PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR  111 (562)
T ss_dssp             CEEECTTSCCCSCCTTSC-TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             cEEEcCCCCCccCCCCCC-CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence            566666666666665442 56666666666655 33433346666666666666666655 4556666666666666666


Q ss_pred             cCC-cccccCCCCCcEEEecCCCCCccc--hhhhcCCCCCEEcccCCccccccCcccccCCCCC--cEEEccCCcc--cc
Q 005744          292 VVD-VAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL--EELYMGNSFT--QW  364 (679)
Q Consensus       292 ~~~-~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L--~~L~l~~~~~--~~  364 (679)
                      +.. |..  .+++|++|++++|.++.+|  ..++++++|++|++++ +.+....   ++.+++|  ++|++++|.+  ..
T Consensus       112 l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~-n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~  185 (562)
T 3a79_B          112 LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQLD---LLPVAHLHLSCILLDLVSYHIKG  185 (562)
T ss_dssp             CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEEC-SBCCTTT---TGGGTTSCEEEEEEEESSCCCCS
T ss_pred             CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCC-CccccCc---hhhhhhceeeEEEeecccccccc
Confidence            665 433  5666666666666666543  4566666666666666 3343321   3333444  6666666544  11


Q ss_pred             eeccCCc-------------------CChhhhhcCCCCceEEeecCC----------------------------Cc---
Q 005744          365 KVEGQSN-------------------ASLGELKQLSRLTTLEVHIPD----------------------------AQ---  394 (679)
Q Consensus       365 ~~~~~~~-------------------~~~~~l~~l~~L~~L~l~~~~----------------------------~~---  394 (679)
                      ..++...                   .....+..+++|+.+++++|.                            +.   
T Consensus       186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~  265 (562)
T 3a79_B          186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC  265 (562)
T ss_dssp             SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred             cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence            1100000                   000011223344444444432                            11   


Q ss_pred             --cCCccccccccceeEEEeCCcc----cCC-----CCCCCcceEEecCCCcceec-hhHHHHh--hcccccccccccCc
Q 005744          395 --VMPQDLVFVELERFRICIGDVW----SWS-----DGYETSKTLKLQLNNSTYLG-YGMKMLL--KRTEDLHLDELAGF  460 (679)
Q Consensus       395 --~~~~~~~~~~L~~L~l~~~~~~----~~~-----~~~~~l~~L~L~~~~~~~~~-~~~~~~l--~~L~~L~l~~~~~~  460 (679)
                        .++......+|+.|++..+...    ...     ..+..|+.+++..+.. .+| .++...+  .+|+.|++++|...
T Consensus       266 ~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~  344 (562)
T 3a79_B          266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFI  344 (562)
T ss_dssp             HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred             HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcc
Confidence              1111112235666666544322    111     2233333333333333 333 2333322  34666766666432


Q ss_pred             ccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEe
Q 005744          461 KNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVE  540 (679)
Q Consensus       461 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~  540 (679)
                      .. +. .   ..+++|++|++++|.....+   ......+++|++|++++ ++++.++....    ..+.+++|+.|+++
T Consensus       345 ~~-~~-~---~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~L~~-N~l~~~~~~~~----~~~~l~~L~~L~l~  411 (562)
T 3a79_B          345 HM-VC-P---PSPSSFTFLNFTQNVFTDSV---FQGCSTLKRLQTLILQR-NGLKNFFKVAL----MTKNMSSLETLDVS  411 (562)
T ss_dssp             CC-CC-C---SSCCCCCEEECCSSCCCTTT---TTTCCSCSSCCEEECCS-SCCCBTTHHHH----TTTTCTTCCEEECT
T ss_pred             cc-cC-c---cCCCCceEEECCCCccccch---hhhhcccCCCCEEECCC-CCcCCcccchh----hhcCCCCCCEEECC
Confidence            11 10 1   34667777777766422111   12235666777777776 45554432111    13456677777776


Q ss_pred             cCCCccc-cccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccc-cccceeeccCCCCccccccCCCCC
Q 005744          541 GCHRVKH-LFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYF-RKLHFLKLQHLPQLTSSGFDLETP  618 (679)
Q Consensus       541 ~c~~L~~-l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~cp~L~~l~~~~~~p  618 (679)
                      ++ +++. ++. ..+..+++|++|++++|.--..++                ..+ ++|++|+++++ +++.+|....  
T Consensus       412 ~N-~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~----------------~~l~~~L~~L~L~~N-~l~~ip~~~~--  470 (562)
T 3a79_B          412 LN-SLNSHAYD-RTCAWAESILVLNLSSNMLTGSVF----------------RCLPPKVKVLDLHNN-RIMSIPKDVT--  470 (562)
T ss_dssp             TS-CCBSCCSS-CCCCCCTTCCEEECCSSCCCGGGG----------------SSCCTTCSEEECCSS-CCCCCCTTTT--
T ss_pred             CC-cCCCccCh-hhhcCcccCCEEECCCCCCCcchh----------------hhhcCcCCEEECCCC-cCcccChhhc--
Confidence            64 4444 422 233456677777777663212221                123 56777777765 5665554432  


Q ss_pred             cccCCCCCccccCCCCCCCccCccc-cccCCCcceeeccccccc
Q 005744          619 TNTQGSNPGIIAEGDPKDFTSLFNE-RVVFPSLKKLKLSSINVE  661 (679)
Q Consensus       619 ~l~~~~~l~~~~~~~~~~l~~~~~~-~~~~p~L~~L~l~~~~l~  661 (679)
                         .++.++.+...++ .+..++.. ...+++|+.|++++|.+.
T Consensus       471 ---~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          471 ---HLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             ---SSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             ---CCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence               3344444544443 23344443 345667777777666543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=1.1e-26  Score=240.64  Aligned_cols=303  Identities=17%  Similarity=0.202  Sum_probs=181.4

Q ss_pred             hcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEc
Q 005744          208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL  287 (679)
Q Consensus       208 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L  287 (679)
                      ..+++++++++++.+..++....+++|++|++++|.+. .++.  +..+++|++|++++|.++.+| .+.++++|++|++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l  117 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL  117 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred             hcccccEEEEeCCccccchhhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence            45566777777666666554335566666666665554 2333  455666666666666555554 3555666666666


Q ss_pred             CCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744          288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE  367 (679)
Q Consensus       288 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (679)
                      ++|.+...+.+..+++|++|++++|.....+..+..+++|++|++++ +.+..++.  ++.+++|++|++++|.+.    
T Consensus       118 ~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~--~~~l~~L~~L~l~~n~l~----  190 (347)
T 4fmz_A          118 NEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE-SKVKDVTP--IANLTDLYSLSLNYNQIE----  190 (347)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECTTSCCC----
T ss_pred             cCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecC-CCcCCchh--hccCCCCCEEEccCCccc----
Confidence            66655553235556666666666653222223355556666666655 33444433  455555666665555442    


Q ss_pred             cCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhh
Q 005744          368 GQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLK  447 (679)
Q Consensus       368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~  447 (679)
                           .+..+..+++|+.|++++|.+...+                                          . +. .++
T Consensus       191 -----~~~~~~~l~~L~~L~l~~n~l~~~~------------------------------------------~-~~-~~~  221 (347)
T 4fmz_A          191 -----DISPLASLTSLHYFTAYVNQITDIT------------------------------------------P-VA-NMT  221 (347)
T ss_dssp             -----CCGGGGGCTTCCEEECCSSCCCCCG------------------------------------------G-GG-GCT
T ss_pred             -----ccccccCCCccceeecccCCCCCCc------------------------------------------h-hh-cCC
Confidence                 1122445555555555554433221                                          1 11 256


Q ss_pred             cccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCC
Q 005744          448 RTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNED  527 (679)
Q Consensus       448 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~  527 (679)
                      +|++|++++|... .++. +   ..+++|++|++++|. +..+    .....+++|++|++++| .++.++.        
T Consensus       222 ~L~~L~l~~n~l~-~~~~-~---~~l~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~l~~n-~l~~~~~--------  282 (347)
T 4fmz_A          222 RLNSLKIGNNKIT-DLSP-L---ANLSQLTWLEIGTNQ-ISDI----NAVKDLTKLKMLNVGSN-QISDISV--------  282 (347)
T ss_dssp             TCCEEECCSSCCC-CCGG-G---TTCTTCCEEECCSSC-CCCC----GGGTTCTTCCEEECCSS-CCCCCGG--------
T ss_pred             cCCEEEccCCccC-CCcc-h---hcCCCCCEEECCCCc-cCCC----hhHhcCCCcCEEEccCC-ccCCChh--------
Confidence            6777777776543 3333 3   678888888888875 2222    33467888888888884 6665521        


Q ss_pred             ccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCC
Q 005744          528 DKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLP  606 (679)
Q Consensus       528 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp  606 (679)
                      ...+++|+.|++++| .++..++ ..+..+++|++|++++|+ +..++              .+..+++|++|++++|+
T Consensus       283 ~~~l~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~--------------~~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          283 LNNLSQLNSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQNH-ITDIR--------------PLASLSKMDSADFANQV  344 (347)
T ss_dssp             GGGCTTCSEEECCSS-CCCGGGH-HHHHTCTTCSEEECCSSS-CCCCG--------------GGGGCTTCSEESSSCC-
T ss_pred             hcCCCCCCEEECcCC-cCCCcCh-hHhhccccCCEEEccCCc-ccccc--------------Chhhhhccceeehhhhc
Confidence            457899999999997 5666633 457889999999999985 55554              24589999999999875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=3.9e-26  Score=245.70  Aligned_cols=375  Identities=16%  Similarity=0.146  Sum_probs=265.0

Q ss_pred             CeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCC-cC-CccccCCcCCCEEEcCC
Q 005744          212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SL-PSSLGCLINLRTLSLEN  289 (679)
Q Consensus       212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l-p~~i~~l~~L~~L~L~~  289 (679)
                      -+.++.+++.+..+|.  -.++|++|++++|.+.+..|.. |.++++|++|++++|.+. .+ |..+.++++|++|++++
T Consensus        12 ~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           12 GYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            3467788888888887  3488999999999987544544 589999999999999986 55 56799999999999999


Q ss_pred             cccCC--cccccCCCCCcEEEecCCCCCc-cchh--hhcCCCCCEEcccCCccccccCc-ccccCCCCCcEEEccCCccc
Q 005744          290 CLVVD--VAIIGDLKKLEILSLKHSSIEQ-LPRE--IGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQ  363 (679)
Q Consensus       290 ~~~~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~  363 (679)
                      |.+..  |..++++++|++|++++|.++. +|..  ++++++|++|++++ +.+..+++ ..++++++|++|++++|.+.
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD-NNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCS-SBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCC-CccCccCcccccCCCCcccEEeCCCCccc
Confidence            99887  7789999999999999999985 4554  88999999999999 55666644 44789999999999999775


Q ss_pred             ceeccCCcCChhhhhcC--CCCceEEeecCCCccCCccc-cccccceeEEEeCCcccCCCCCCCcceEEecCCCcce-ec
Q 005744          364 WKVEGQSNASLGELKQL--SRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTY-LG  439 (679)
Q Consensus       364 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~-~~  439 (679)
                      ....       ..+..+  .+|+.|+++.+.+..++... ...           ........++|+.|+++++.... .+
T Consensus       168 ~~~~-------~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~-----------~~~~~~~~~~L~~L~Ls~n~l~~~~~  229 (455)
T 3v47_A          168 SICE-------EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE-----------KCGNPFKNTSITTLDLSGNGFKESMA  229 (455)
T ss_dssp             CCCT-------TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH-----------HHCCTTTTCEEEEEECTTSCCCHHHH
T ss_pred             ccCh-------hhhhccccccccccccccCcccccchhhcccc-----------ccccccccceeeeEecCCCcccccch
Confidence            3222       233333  57889999888777655432 000           00112234566777777765443 33


Q ss_pred             hhHHHH--hhcccccccccccCcccc----------cccccchhhccccceEeeecCCCeeEEEeCCCccccccccceee
Q 005744          440 YGMKML--LKRTEDLHLDELAGFKNV----------VHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLF  507 (679)
Q Consensus       440 ~~~~~~--l~~L~~L~l~~~~~~~~~----------~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~  507 (679)
                      ..+...  .++|+.|++++|......          +..+.. ...++|++|++++|......   ......+++|++|+
T Consensus       230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~  305 (455)
T 3v47_A          230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG-LEASGVKTCDLSKSKIFALL---KSVFSHFTDLEQLT  305 (455)
T ss_dssp             HHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGG-GTTSCCCEEECCSSCCCEEC---TTTTTTCTTCCEEE
T ss_pred             hhhhccccccceeeEeeccccccccccchhhhccCccccccc-ccccCceEEEecCccccccc---hhhcccCCCCCEEE
Confidence            333332  267888888776433221          111111 23478999999998643322   23346789999999


Q ss_pred             ccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCC
Q 005744          508 LHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNG  587 (679)
Q Consensus       508 l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~  587 (679)
                      +++ +.++.+....      ...+++|+.|++++| .++.+++ ..+..+++|++|++++| .+..++..          
T Consensus       306 Ls~-n~l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~----------  365 (455)
T 3v47_A          306 LAQ-NEINKIDDNA------FWGLTHLLKLNLSQN-FLGSIDS-RMFENLDKLEVLDLSYN-HIRALGDQ----------  365 (455)
T ss_dssp             CTT-SCCCEECTTT------TTTCTTCCEEECCSS-CCCEECG-GGGTTCTTCCEEECCSS-CCCEECTT----------
T ss_pred             CCC-CcccccChhH------hcCcccCCEEECCCC-ccCCcCh-hHhcCcccCCEEECCCC-cccccChh----------
Confidence            998 5676654433      447899999999995 6777744 34678899999999988 45554322          


Q ss_pred             ccccccccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccccc
Q 005744          588 SISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKI  663 (679)
Q Consensus       588 ~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l  663 (679)
                        .+..+++|++|+++++ +++.++...                            ...+++|+.|++++|.++.-
T Consensus       366 --~~~~l~~L~~L~L~~N-~l~~~~~~~----------------------------~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          366 --SFLGLPNLKELALDTN-QLKSVPDGI----------------------------FDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             --TTTTCTTCCEEECCSS-CCSCCCTTT----------------------------TTTCTTCCEEECCSSCBCCC
T ss_pred             --hccccccccEEECCCC-ccccCCHhH----------------------------hccCCcccEEEccCCCcccC
Confidence              4668999999999985 566655431                            12447888888888866543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.95  E-value=2.8e-26  Score=245.13  Aligned_cols=264  Identities=13%  Similarity=0.112  Sum_probs=187.9

Q ss_pred             hhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEE
Q 005744          207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS  286 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  286 (679)
                      ...+++++|++++|.+..+|....+++|++|++++|.+.+ +|   ++.+++|++|++++|.++.+|  ++++++|++|+
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~  112 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN  112 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred             hHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence            4467899999999999888854589999999999999874 44   588999999999999999886  88999999999


Q ss_pred             cCCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccccee
Q 005744          287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV  366 (679)
Q Consensus       287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~  366 (679)
                      +++|.+...+ ++++++|++|++++|.++.+|  ++.+++|++|++++|..++.++   ++.+++|++|++++|.+..  
T Consensus       113 L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~--  184 (457)
T 3bz5_A          113 CDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE--  184 (457)
T ss_dssp             CCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC--
T ss_pred             CCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce--
Confidence            9999988843 899999999999999999885  8899999999999977777773   7889999999999997742  


Q ss_pred             ccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCccc-CCCCCCCcceEEecCCCcceechhHHHH
Q 005744          367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWS-WSDGYETSKTLKLQLNNSTYLGYGMKML  445 (679)
Q Consensus       367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~L~~~~~~~~~~~~~~~  445 (679)
                             + .+..+++|+.|++++|.+..++ ...+++|+.|++..+.... .+..+++|+.|+++++.....|.+   .
T Consensus       185 -------l-~l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~~---~  252 (457)
T 3bz5_A          185 -------L-DVSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVS---T  252 (457)
T ss_dssp             -------C-CCTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCT---T
T ss_pred             -------e-ccccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCHH---H
Confidence                   1 1677889999999998887652 1245566666654443221 123344444444444433333211   1


Q ss_pred             hhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccc
Q 005744          446 LKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVC  518 (679)
Q Consensus       446 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~  518 (679)
                      +++|+.|++++                 .+|+.|++++|.....++.     ..+++|+.|++++|..+..++
T Consensus       253 l~~L~~L~l~~-----------------n~L~~L~l~~n~~~~~~~~-----~~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          253 LSKLTTLHCIQ-----------------TDLLEIDLTHNTQLIYFQA-----EGCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             CTTCCEEECTT-----------------CCCSCCCCTTCTTCCEEEC-----TTCTTCCCCCCTTCTTCCEEE
T ss_pred             CCCCCEEeccC-----------------CCCCEEECCCCccCCcccc-----cccccCCEEECCCCcccceec
Confidence            22222222111                 1345555666655544432     356777777777766555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=3.6e-26  Score=240.56  Aligned_cols=306  Identities=14%  Similarity=0.182  Sum_probs=226.1

Q ss_pred             ccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCcccCC--cccccCCCCC
Q 005744          228 RLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKL  304 (679)
Q Consensus       228 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L  304 (679)
                      ...++++++|++.++.+. .+|..+|..+++|++|++++|.++.+| ..+..+++|++|++++|.+..  +..++++++|
T Consensus        41 ~~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           41 DITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             SGGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            346788888888887765 678777788888888888888888775 478888888888888888877  4568888888


Q ss_pred             cEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCC
Q 005744          305 EILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRL  383 (679)
Q Consensus       305 ~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L  383 (679)
                      ++|++++|.++.+|.. ++++++|++|++++ +.++.+++..++.+++|++|++++|.+...          .+..+++|
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~l~~L  188 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHV----------DLSLIPSL  188 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSCCSBC----------CGGGCTTC
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCcCCcc----------cccccccc
Confidence            9999988888888876 47888888888888 567777766688888888888888876421          35667788


Q ss_pred             ceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCcccc
Q 005744          384 TTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNV  463 (679)
Q Consensus       384 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  463 (679)
                      +.|++++|.+..++                       ....++.|+++++.....+...   .++|+.|++++|.... .
T Consensus       189 ~~L~l~~n~l~~~~-----------------------~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~-~  241 (390)
T 3o6n_A          189 FHANVSYNLLSTLA-----------------------IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD-T  241 (390)
T ss_dssp             SEEECCSSCCSEEE-----------------------CCSSCSEEECCSSCCCEEECCC---CSSCCEEECCSSCCCC-C
T ss_pred             ceeecccccccccC-----------------------CCCcceEEECCCCeeeeccccc---cccccEEECCCCCCcc-c
Confidence            88888877654322                       1234555555555555544332   4678888888876533 2


Q ss_pred             cccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCC
Q 005744          464 VHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCH  543 (679)
Q Consensus       464 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  543 (679)
                       ..+   ..+++|++|++++|. +..+.  ...+..+++|++|++++ ++++.++..       ...+++|+.|++++| 
T Consensus       242 -~~l---~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~L~~-n~l~~~~~~-------~~~l~~L~~L~L~~n-  305 (390)
T 3o6n_A          242 -AWL---LNYPGLVEVDLSYNE-LEKIM--YHPFVKMQRLERLYISN-NRLVALNLY-------GQPIPTLKVLDLSHN-  305 (390)
T ss_dssp             -GGG---GGCTTCSEEECCSSC-CCEEE--SGGGTTCSSCCEEECCS-SCCCEEECS-------SSCCTTCCEEECCSS-
T ss_pred             -HHH---cCCCCccEEECCCCc-CCCcC--hhHccccccCCEEECCC-CcCcccCcc-------cCCCCCCCEEECCCC-
Confidence             334   778899999999885 33332  23346788999999998 567766432       356899999999996 


Q ss_pred             CccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCC
Q 005744          544 RVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLP  606 (679)
Q Consensus       544 ~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp  606 (679)
                      +++.+++  .+..+++|++|++++|+ +..++               +..+++|++|++.++|
T Consensus       306 ~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~~---------------~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          306 HLLHVER--NQPQFDRLENLYLDHNS-IVTLK---------------LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC---------------CCTTCCCSEEECCSSC
T ss_pred             cceecCc--cccccCcCCEEECCCCc-cceeC---------------chhhccCCEEEcCCCC
Confidence            6777754  35789999999999884 55442               3478999999999875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=1.1e-26  Score=256.52  Aligned_cols=135  Identities=20%  Similarity=0.207  Sum_probs=114.7

Q ss_pred             cccchhhhhhhhcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc
Q 005744          197 NVADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS  274 (679)
Q Consensus       197 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~  274 (679)
                      .+..++.+|...++++++|++++|.+..++. .+ .+++|++|++++|.+.+..| +.|.++++|++|++++|.++.+|.
T Consensus        39 s~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~  117 (562)
T 3a79_B           39 SNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLDVSHNRLQNISC  117 (562)
T ss_dssp             TTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECTTSCCCEECS
T ss_pred             CCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEECCCCcCCccCc
Confidence            3455667777667899999999999988875 44 89999999999999885444 446999999999999999999998


Q ss_pred             cccCCcCCCEEEcCCcccCC---cccccCCCCCcEEEecCCCCCccchhhhcCCCC--CEEcccCCc
Q 005744          275 SLGCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCL--KLLDLSNCS  336 (679)
Q Consensus       275 ~i~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L--~~L~l~~~~  336 (679)
                      .  .+++|++|++++|.+..   |..++++++|++|++++|.++..  .+..+++|  ++|++++|.
T Consensus       118 ~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          118 C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESS
T ss_pred             c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeeccc
Confidence            7  89999999999999887   37899999999999999998863  46666776  999998853

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=1.5e-26  Score=246.97  Aligned_cols=224  Identities=13%  Similarity=0.070  Sum_probs=108.9

Q ss_pred             cCCCeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCc-------------cEEEeCCCcCCcCCc
Q 005744          209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTEL-------------RVLDLTGFRFHSLPS  274 (679)
Q Consensus       209 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~l~~lp~  274 (679)
                      ...++.+++++|.++.+|..+ .+++|++|++++|.+.+.+|..+ +++++|             ++|++++|.++.+|.
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~   88 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred             cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence            356777777777777777666 67777777777777776777654 555543             777777777766665


Q ss_pred             cccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCc
Q 005744          275 SLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE  353 (679)
Q Consensus       275 ~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~  353 (679)
                      .   .++|++|++++|.+.. |..   +.+|++|++++|.++.+|..   .++|++|++++ +.++.+| + ++++++|+
T Consensus        89 ~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~-n~l~~lp-~-~~~l~~L~  156 (454)
T 1jl5_A           89 L---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSN-NQLEKLP-E-LQNSSFLK  156 (454)
T ss_dssp             C---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCS-SCCSSCC-C-CTTCTTCC
T ss_pred             C---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcC-CCCCCCc-c-cCCCCCCC
Confidence            2   2566777777766666 432   25566666666666655431   14566666666 3455555 2 56666666


Q ss_pred             EEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCC
Q 005744          354 ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLN  433 (679)
Q Consensus       354 ~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~  433 (679)
                      +|++++|.+... +    .      ...+|+.|++++|.+..+|....+++|+.|++..+..........+++.|+++++
T Consensus       157 ~L~l~~N~l~~l-p----~------~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n  225 (454)
T 1jl5_A          157 IIDVDNNSLKKL-P----D------LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN  225 (454)
T ss_dssp             EEECCSSCCSCC-C----C------CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS
T ss_pred             EEECCCCcCccc-C----C------CcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCC
Confidence            666666654321 0    0      0125555555555555554322455555555544433222122235555555555


Q ss_pred             CcceechhHHHHhhccccccccccc
Q 005744          434 NSTYLGYGMKMLLKRTEDLHLDELA  458 (679)
Q Consensus       434 ~~~~~~~~~~~~l~~L~~L~l~~~~  458 (679)
                      ....+|. +.. +++|+.|++++|.
T Consensus       226 ~l~~lp~-~~~-l~~L~~L~l~~N~  248 (454)
T 1jl5_A          226 ILEELPE-LQN-LPFLTTIYADNNL  248 (454)
T ss_dssp             CCSSCCC-CTT-CTTCCEEECCSSC
T ss_pred             cCCcccc-cCC-CCCCCEEECCCCc
Confidence            4444442 222 4555555555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=1.4e-25  Score=232.14  Aligned_cols=287  Identities=17%  Similarity=0.247  Sum_probs=218.9

Q ss_pred             hhhhhh-hhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCC
Q 005744          201 LKEELD-KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL  279 (679)
Q Consensus       201 ~~~~~~-~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l  279 (679)
                      +..++. ...+++++|++++|.+..++....+++|++|++++|.+. .++.  +..+++|++|++++|.++.+|. +..+
T Consensus        56 i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l  131 (347)
T 4fmz_A           56 VASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT-DISA--LQNLTNLRELYLNEDNISDISP-LANL  131 (347)
T ss_dssp             CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEECTTSCCCCCGG-GTTC
T ss_pred             cccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCccc-CchH--HcCCCcCCEEECcCCcccCchh-hccC
Confidence            344444 668899999999999998888559999999999999876 4543  6899999999999999999877 8999


Q ss_pred             cCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEcc
Q 005744          280 INLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG  358 (679)
Q Consensus       280 ~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~  358 (679)
                      ++|++|++++|.... +..+..+++|++|++++|.+..++. +..+++|++|++++ +.+..++.  +..+++|+.|+++
T Consensus       132 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~-n~l~~~~~--~~~l~~L~~L~l~  207 (347)
T 4fmz_A          132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNY-NQIEDISP--LASLTSLHYFTAY  207 (347)
T ss_dssp             TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTT-SCCCCCGG--GGGCTTCCEEECC
T ss_pred             CceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccC-Cccccccc--ccCCCccceeecc
Confidence            999999999996655 7779999999999999999998886 89999999999999 56777776  7899999999999


Q ss_pred             CCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCccee
Q 005744          359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYL  438 (679)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~  438 (679)
                      +|.+..         ...+..+++|+.|++++|.+..++..                    ..                 
T Consensus       208 ~n~l~~---------~~~~~~~~~L~~L~l~~n~l~~~~~~--------------------~~-----------------  241 (347)
T 4fmz_A          208 VNQITD---------ITPVANMTRLNSLKIGNNKITDLSPL--------------------AN-----------------  241 (347)
T ss_dssp             SSCCCC---------CGGGGGCTTCCEEECCSSCCCCCGGG--------------------TT-----------------
T ss_pred             cCCCCC---------CchhhcCCcCCEEEccCCccCCCcch--------------------hc-----------------
Confidence            997642         22378899999999999877654331                    11                 


Q ss_pred             chhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccc
Q 005744          439 GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVC  518 (679)
Q Consensus       439 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~  518 (679)
                             +++|+.|++++|.. ..++ .+   ..+++|++|++++|. +..+    .....+++|++|++++| .+....
T Consensus       242 -------l~~L~~L~l~~n~l-~~~~-~~---~~l~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~L~~n-~l~~~~  303 (347)
T 4fmz_A          242 -------LSQLTWLEIGTNQI-SDIN-AV---KDLTKLKMLNVGSNQ-ISDI----SVLNNLSQLNSLFLNNN-QLGNED  303 (347)
T ss_dssp             -------CTTCCEEECCSSCC-CCCG-GG---TTCTTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSS-CCCGGG
T ss_pred             -------CCCCCEEECCCCcc-CCCh-hH---hcCCCcCEEEccCCc-cCCC----hhhcCCCCCCEEECcCC-cCCCcC
Confidence                   34555555555432 2222 23   567777777777774 2222    23456778888888874 444433


Q ss_pred             cCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccc
Q 005744          519 DGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCT  569 (679)
Q Consensus       519 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~  569 (679)
                      ...      .+.+++|+.|++++|+ ++.+++   +..+++|++|++++|+
T Consensus       304 ~~~------l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          304 MEV------IGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV  344 (347)
T ss_dssp             HHH------HHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred             hhH------hhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence            222      3467889999998864 777654   5678899999998874

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.4e-25  Score=249.05  Aligned_cols=305  Identities=14%  Similarity=0.177  Sum_probs=214.1

Q ss_pred             cCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCcccCC--cccccCCCCCc
Q 005744          229 LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLE  305 (679)
Q Consensus       229 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~  305 (679)
                      +.+++++.++++++.+. .+|..+|..+++|++|++++|.++.+| ..++.+++|++|++++|.+..  +..++++++|+
T Consensus        48 l~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            35677888888877765 677777788888888888888888764 478888888888888888877  45678888888


Q ss_pred             EEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCc
Q 005744          306 ILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLT  384 (679)
Q Consensus       306 ~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~  384 (679)
                      +|++++|.++.+|.. ++++++|++|++++ +.+..+++..++.+++|++|++++|.+...          .+..+++|+
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------~~~~l~~L~  195 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHV----------DLSLIPSLF  195 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECTTSCCSBC----------CGGGCTTCS
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeC-CcCCCCChhhhhcCCcCcEEECcCCCCCCc----------Chhhhhhhh
Confidence            888888888888876 47888888888888 466777766688888888888888866421          245677788


Q ss_pred             eEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCccccc
Q 005744          385 TLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVV  464 (679)
Q Consensus       385 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  464 (679)
                      .|++++|.+..++                       .+..++.|+++++....++..+   .++|+.|++++|....  +
T Consensus       196 ~L~l~~n~l~~l~-----------------------~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~  247 (597)
T 3oja_B          196 HANVSYNLLSTLA-----------------------IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--T  247 (597)
T ss_dssp             EEECCSSCCSEEE-----------------------CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--C
T ss_pred             hhhcccCcccccc-----------------------CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--C
Confidence            8888877654322                       1234555555555544444332   3567777777775432  2


Q ss_pred             ccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCC
Q 005744          465 HELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHR  544 (679)
Q Consensus       465 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~  544 (679)
                      ..+   ..+++|++|++++|... .+.  ...+..+++|++|++++ +.+..++..       ...+++|+.|++++| .
T Consensus       248 ~~l---~~l~~L~~L~Ls~N~l~-~~~--~~~~~~l~~L~~L~Ls~-N~l~~l~~~-------~~~l~~L~~L~Ls~N-~  312 (597)
T 3oja_B          248 AWL---LNYPGLVEVDLSYNELE-KIM--YHPFVKMQRLERLYISN-NRLVALNLY-------GQPIPTLKVLDLSHN-H  312 (597)
T ss_dssp             GGG---GGCTTCSEEECCSSCCC-EEE--SGGGTTCSSCCEEECTT-SCCCEEECS-------SSCCTTCCEEECCSS-C
T ss_pred             hhh---ccCCCCCEEECCCCccC-CCC--HHHhcCccCCCEEECCC-CCCCCCCcc-------cccCCCCcEEECCCC-C
Confidence            334   67788888888887533 322  12345778888888887 566665432       346788888888885 5


Q ss_pred             ccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCC
Q 005744          545 VKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLP  606 (679)
Q Consensus       545 L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp  606 (679)
                      ++.+|+  .+..+++|+.|++++|. +..++               +..+++|+.|+++++|
T Consensus       313 l~~i~~--~~~~l~~L~~L~L~~N~-l~~~~---------------~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          313 LLHVER--NQPQFDRLENLYLDHNS-IVTLK---------------LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CCCCGG--GHHHHTTCSEEECCSSC-CCCCC---------------CCTTCCCSEEECCSSC
T ss_pred             CCccCc--ccccCCCCCEEECCCCC-CCCcC---------------hhhcCCCCEEEeeCCC
Confidence            667643  35778888888888874 44432               3478888888888865

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=5.2e-25  Score=238.28  Aligned_cols=259  Identities=19%  Similarity=0.156  Sum_probs=144.1

Q ss_pred             eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcc
Q 005744          213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL  291 (679)
Q Consensus       213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~  291 (679)
                      +.++.+++.+..+|..+ .+++++|++++|.+.+ ++...|.++++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            34555566666666543 2466667777666653 3333346677777777777766655 5666677777777777776


Q ss_pred             cCC-c-ccccCCCCCcEEEecCCCCCcc-chhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceecc
Q 005744          292 VVD-V-AIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG  368 (679)
Q Consensus       292 ~~~-~-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~  368 (679)
                      +.. + ..++++++|++|++++|.++.+ |..+.++++|++|++++ +.+..+++..++.+++|++|++++|.+..    
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----  166 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTS----  166 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSS----
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCcc----
Confidence            666 3 3456677777777777766654 34566677777777766 45555555556667777777777665532    


Q ss_pred             CCcCChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEEEeCCccc----CCCCCCCcceEEecCCCcceechhH
Q 005744          369 QSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDVWS----WSDGYETSKTLKLQLNNSTYLGYGM  442 (679)
Q Consensus       369 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~----~~~~~~~l~~L~L~~~~~~~~~~~~  442 (679)
                         .....+.++++|+.|++++|.+..++...  .+++|+.|++..+....    ......+|+.|+++++....+|...
T Consensus       167 ---~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  243 (477)
T 2id5_A          167 ---IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA  243 (477)
T ss_dssp             ---CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH
T ss_pred             ---cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH
Confidence               12234566667777777766665554432  44555555554432111    1111224455555554444444332


Q ss_pred             HHHhhcccccccccccCcccccccccchhhccccceEeeecC
Q 005744          443 KMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNG  484 (679)
Q Consensus       443 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  484 (679)
                      ...+++|+.|++++|......+..+   ..+++|++|++++|
T Consensus       244 ~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n  282 (477)
T 2id5_A          244 VRHLVYLRFLNLSYNPISTIEGSML---HELLRLQEIQLVGG  282 (477)
T ss_dssp             HTTCTTCCEEECCSSCCCEECTTSC---TTCTTCCEEECCSS
T ss_pred             hcCccccCeeECCCCcCCccChhhc---cccccCCEEECCCC
Confidence            2224455555555544332222233   44555555555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=1.3e-25  Score=236.34  Aligned_cols=302  Identities=18%  Similarity=0.163  Sum_probs=242.2

Q ss_pred             hcCCCeEEEccCCCcccCCccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCE
Q 005744          208 IDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRT  284 (679)
Q Consensus       208 ~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~  284 (679)
                      ...++++++++++.+..+|...  .+++|++|++++|.+. .++...|..+++|++|++++|.++.+| ..++++++|++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            4688999999999999999865  7999999999999987 455555699999999999999999874 56899999999


Q ss_pred             EEcCCcccCC-ccc-ccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCc
Q 005744          285 LSLENCLVVD-VAI-IGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF  361 (679)
Q Consensus       285 L~L~~~~~~~-~~~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~  361 (679)
                      |++++|.+.. |.. ++++++|++|++++|.++.++. .++++++|++|++++ +.++.++   ++.+++|++|++++|.
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~---~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS-SCCSBCC---GGGCTTCSEEECCSSC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC-CcCCccc---cccccccceeeccccc
Confidence            9999999998 554 6999999999999999998755 589999999999999 5677764   5678999999999987


Q ss_pred             ccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechh
Q 005744          362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYG  441 (679)
Q Consensus       362 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~  441 (679)
                      +..            +....+|+.|++++|.+..++...                     .++|+.|+++++..... .+
T Consensus       198 l~~------------~~~~~~L~~L~l~~n~l~~~~~~~---------------------~~~L~~L~l~~n~l~~~-~~  243 (390)
T 3o6n_A          198 LST------------LAIPIAVEELDASHNSINVVRGPV---------------------NVELTILKLQHNNLTDT-AW  243 (390)
T ss_dssp             CSE------------EECCSSCSEEECCSSCCCEEECCC---------------------CSSCCEEECCSSCCCCC-GG
T ss_pred             ccc------------cCCCCcceEEECCCCeeeeccccc---------------------cccccEEECCCCCCccc-HH
Confidence            642            334568999999998877654332                     24556666666554443 34


Q ss_pred             HHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCc
Q 005744          442 MKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGK  521 (679)
Q Consensus       442 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~  521 (679)
                      +.. +++|+.|++++|......|..+   ..+++|++|++++|. +..++.   ....+|+|++|+++++ .++.++.. 
T Consensus       244 l~~-l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~-  313 (390)
T 3o6n_A          244 LLN-YPGLVEVDLSYNELEKIMYHPF---VKMQRLERLYISNNR-LVALNL---YGQPIPTLKVLDLSHN-HLLHVERN-  313 (390)
T ss_dssp             GGG-CTTCSEEECCSSCCCEEESGGG---TTCSSCCEEECCSSC-CCEEEC---SSSCCTTCCEEECCSS-CCCCCGGG-
T ss_pred             HcC-CCCccEEECCCCcCCCcChhHc---cccccCCEEECCCCc-CcccCc---ccCCCCCCCEEECCCC-cceecCcc-
Confidence            444 7899999999997766667777   789999999999985 555543   2357899999999994 77766533 


Q ss_pred             ccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccc
Q 005744          522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCT  569 (679)
Q Consensus       522 ~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~  569 (679)
                            ...+++|+.|++++| .++.++    +..+++|++|++++++
T Consensus       314 ------~~~l~~L~~L~L~~N-~i~~~~----~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          314 ------QPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             ------HHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred             ------ccccCcCCEEECCCC-ccceeC----chhhccCCEEEcCCCC
Confidence                  457899999999995 577773    3568999999999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.93  E-value=8.4e-25  Score=245.85  Aligned_cols=424  Identities=17%  Similarity=0.127  Sum_probs=255.7

Q ss_pred             EEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCccc
Q 005744          214 AISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLV  292 (679)
Q Consensus       214 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~  292 (679)
                      +.+-++..+..+|..+ -+++++|++++|.+. .+|+..|.++++|++|+|++|.++.+| ..|.++++|++|+|++|++
T Consensus        35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             EEECTTSCCSSCCSSS-CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEECCCCCcCccCCCC-CcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence            4455556678888754 247999999999987 677666799999999999999999985 4699999999999999999


Q ss_pred             CC-c-ccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccC-cccccCCCCCcEEEccCCcccceecc
Q 005744          293 VD-V-AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIR-PNVISNLTRLEELYMGNSFTQWKVEG  368 (679)
Q Consensus       293 ~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp-~~~l~~l~~L~~L~l~~~~~~~~~~~  368 (679)
                      .. | ..|+++++|++|++++|+++.+|.. ++++++|++|++++ +.++.++ +..++.+++|++|++++|.+..... 
T Consensus       113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-  190 (635)
T 4g8a_A          113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-  190 (635)
T ss_dssp             CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-
T ss_pred             CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecccc-CccccCCCchhhccchhhhhhcccCcccccccc-
Confidence            88 4 5789999999999999999999874 89999999999999 5565542 3347899999999999998764332 


Q ss_pred             CCcCChhhhhcCCC-CceEEeecCCCccCCccc--------------------------cccccceeEEEeCCc------
Q 005744          369 QSNASLGELKQLSR-LTTLEVHIPDAQVMPQDL--------------------------VFVELERFRICIGDV------  415 (679)
Q Consensus       369 ~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~--------------------------~~~~L~~L~l~~~~~------  415 (679)
                         ..+..+.+++. +..++++.|.+..++...                          .+..++...+.....      
T Consensus       191 ---~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l  267 (635)
T 4g8a_A          191 ---TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL  267 (635)
T ss_dssp             ---GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred             ---ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence               23344444432 234555555544333221                          112222222211100      


Q ss_pred             -------------------------------ccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCccccc
Q 005744          416 -------------------------------WSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVV  464 (679)
Q Consensus       416 -------------------------------~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  464 (679)
                                                     ...+.....+..+.+..+.....+.. . ....++.|++.++......+
T Consensus       268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~  345 (635)
T 4g8a_A          268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDF-S-YNFGWQHLELVNCKFGQFPT  345 (635)
T ss_dssp             SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGG-G-SCCCCSEEEEESCEESSCCC
T ss_pred             ccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccccc-c-cchhhhhhhcccccccCcCc
Confidence                                           00111222334444443332222211 1 13567777777765322111


Q ss_pred             ccc----------------cchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCc
Q 005744          465 HEL----------------DDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDD  528 (679)
Q Consensus       465 ~~~----------------~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~  528 (679)
                      ..+                .....+++|+.|+++++.... ...........++|+.|++..+. ....+       ...
T Consensus       346 ~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~~~~~~L~~L~~~~~~-~~~~~-------~~~  416 (635)
T 4g8a_A          346 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF-KGCCSQSDFGTISLKYLDLSFNG-VITMS-------SNF  416 (635)
T ss_dssp             CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBE-EEECCHHHHSCSCCCEEECCSCS-EEEEC-------SCC
T ss_pred             ccchhhhhcccccccCCCCcccccccccccchhhcccccc-ccccccchhhhhhhhhhhccccc-ccccc-------ccc
Confidence            110                000123444444444443211 11111111233444444444421 11111       113


Q ss_pred             cccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCc
Q 005744          529 KSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQL  608 (679)
Q Consensus       529 ~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L  608 (679)
                      ..+++|+.+++..+...... +...+..+++|+.++++++. +..+...            .+..+++|+.|+++++..+
T Consensus       417 ~~l~~L~~l~l~~~~~~~~~-~~~~~~~l~~l~~l~ls~n~-l~~~~~~------------~~~~~~~L~~L~Ls~N~~~  482 (635)
T 4g8a_A          417 LGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTH-TRVAFNG------------IFNGLSSLEVLKMAGNSFQ  482 (635)
T ss_dssp             TTCTTCCEEECTTSEEESTT-SSCTTTTCTTCCEEECTTSC-CEECCTT------------TTTTCTTCCEEECTTCEEG
T ss_pred             cccccccchhhhhccccccc-cccccccccccccccccccc-ccccccc------------ccccchhhhhhhhhhcccc
Confidence            35566666666664433322 22334566677777776652 3322211            3557899999999998766


Q ss_pred             cccccCCCCCcccCCCCCccccCCCCCCCccCc-cccccCCCcceeeccccccccccCCCccccccc
Q 005744          609 TSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLF-NERVVFPSLKKLKLSSINVEKIWLNSFSAIESW  674 (679)
Q Consensus       609 ~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~-~~~~~~p~L~~L~l~~~~l~~l~~~~~~~~~~~  674 (679)
                      ..+....    +..+++++.+....+. +..++ .....+++|+.|+|++|+++.++...|...++.
T Consensus       483 ~~~~~~~----~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  544 (635)
T 4g8a_A          483 ENFLPDI----FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL  544 (635)
T ss_dssp             GGEECSC----CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred             cccCchh----hhhccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence            6544332    3456677788877764 44443 335578999999999999999998877654443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=7.1e-25  Score=234.21  Aligned_cols=353  Identities=16%  Similarity=0.117  Sum_probs=234.9

Q ss_pred             CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCCcccccCCCCCcEEEe
Q 005744          230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL  309 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l  309 (679)
                      .+++|++|++++|.+.+ +| . +..+++|++|++++|.++.+|  ++.+++|++|++++|.+...+ ++++++|++|++
T Consensus        40 ~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L  113 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC  113 (457)
T ss_dssp             HHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred             HcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence            68999999999999874 56 3 589999999999999999986  899999999999999998853 899999999999


Q ss_pred             cCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEee
Q 005744          310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH  389 (679)
Q Consensus       310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  389 (679)
                      ++|.++.+|  ++.+++|++|++++ +.++.++   ++.+++|++|++++|.....        + .+..+++|+.|+++
T Consensus       114 ~~N~l~~l~--~~~l~~L~~L~l~~-N~l~~l~---l~~l~~L~~L~l~~n~~~~~--------~-~~~~l~~L~~L~ls  178 (457)
T 3bz5_A          114 DTNKLTKLD--VSQNPLLTYLNCAR-NTLTEID---VSHNTQLTELDCHLNKKITK--------L-DVTPQTQLTTLDCS  178 (457)
T ss_dssp             CSSCCSCCC--CTTCTTCCEEECTT-SCCSCCC---CTTCTTCCEEECTTCSCCCC--------C-CCTTCTTCCEEECC
T ss_pred             CCCcCCeec--CCCCCcCCEEECCC-Cccceec---cccCCcCCEEECCCCCcccc--------c-ccccCCcCCEEECC
Confidence            999999986  89999999999999 5677774   78999999999999854321        1 46788999999999


Q ss_pred             cCCCccCCccccccccceeEEEeCCccc-CCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCccccccccc
Q 005744          390 IPDAQVMPQDLVFVELERFRICIGDVWS-WSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELD  468 (679)
Q Consensus       390 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  468 (679)
                      +|.+..++ ...+++|+.|++..+.... .+..+++|+.|+++++....+|  +.. +++|+.|++++|... .+|  + 
T Consensus       179 ~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~-l~~L~~L~l~~N~l~-~~~--~-  250 (457)
T 3bz5_A          179 FNKITELD-VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID--VTP-LTQLTYFDCSVNPLT-ELD--V-  250 (457)
T ss_dssp             SSCCCCCC-CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTT-CTTCSEEECCSSCCS-CCC--C-
T ss_pred             CCccceec-cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC--ccc-cCCCCEEEeeCCcCC-CcC--H-
Confidence            99988765 2256667777665444322 2333444444444444433333  111 344444444444321 111  1 


Q ss_pred             chhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCcccc
Q 005744          469 DEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHL  548 (679)
Q Consensus       469 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l  548 (679)
                        +.+++|+.|++++                 .+|+.|++++|..+..++         .+.+++|+.|++++|+.+..+
T Consensus       251 --~~l~~L~~L~l~~-----------------n~L~~L~l~~n~~~~~~~---------~~~l~~L~~L~Ls~n~~l~~l  302 (457)
T 3bz5_A          251 --STLSKLTTLHCIQ-----------------TDLLEIDLTHNTQLIYFQ---------AEGCRKIKELDVTHNTQLYLL  302 (457)
T ss_dssp             --TTCTTCCEEECTT-----------------CCCSCCCCTTCTTCCEEE---------CTTCTTCCCCCCTTCTTCCEE
T ss_pred             --HHCCCCCEEeccC-----------------CCCCEEECCCCccCCccc---------ccccccCCEEECCCCccccee
Confidence              2334444443322                 235556666655444433         357799999999999888777


Q ss_pred             ccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCcc
Q 005744          549 FPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGI  628 (679)
Q Consensus       549 ~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~  628 (679)
                      +.     ..++|+.|++++|++|+.+.........     ..+..+++|+.|++++ +++..++.      +..+..   
T Consensus       303 ~~-----~~~~L~~L~l~~~~~L~~L~L~~N~l~~-----l~l~~l~~L~~L~l~~-N~l~~l~~------L~~L~l---  362 (457)
T 3bz5_A          303 DC-----QAAGITELDLSQNPKLVYLYLNNTELTE-----LDVSHNTKLKSLSCVN-AHIQDFSS------VGKIPA---  362 (457)
T ss_dssp             EC-----TTCCCSCCCCTTCTTCCEEECTTCCCSC-----CCCTTCTTCSEEECCS-SCCCBCTT------GGGSSG---
T ss_pred             cc-----CCCcceEechhhcccCCEEECCCCcccc-----cccccCCcCcEEECCC-CCCCCccc------cccccc---
Confidence            42     3466777777777766655432211111     1356888999999887 45665422      111110   


Q ss_pred             ccCCCCCCCccCccccccCCCcceeeccccccc-cccCCC
Q 005744          629 IAEGDPKDFTSLFNERVVFPSLKKLKLSSINVE-KIWLNS  667 (679)
Q Consensus       629 ~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~-~l~~~~  667 (679)
                      . .   ..+    .+...+.+|+.+++++|+++ .||.+.
T Consensus       363 ~-~---n~l----~g~~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          363 L-N---NNF----EAEGQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             G-G---TSE----EEEEEEEECCCBCCBTTBEEEECCTTC
T ss_pred             c-C---CcE----EecceeeecCccccccCcEEEEcChhH
Confidence            0 0   001    11123467788899999876 566543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=9.4e-25  Score=236.28  Aligned_cols=314  Identities=18%  Similarity=0.194  Sum_probs=237.5

Q ss_pred             eeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecC
Q 005744          235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKH  311 (679)
Q Consensus       235 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~  311 (679)
                      +.++.+++.+. .+|..+   .+++++|++++|.++.+ |..|.++++|++|++++|.+..  |..|+++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            45667666665 677654   46899999999999987 5789999999999999999887  67899999999999999


Q ss_pred             CCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeec
Q 005744          312 SSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHI  390 (679)
Q Consensus       312 ~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  390 (679)
                      |.++.+|.. +.++++|++|++++ +.+..+++..+.++++|++|++++|.+....       ...+..+++|+.|++++
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~l~~L~~L~l~~  161 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISE-NKIVILLDYMFQDLYNLKSLEVGDNDLVYIS-------HRAFSGLNSLEQLTLEK  161 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEEECCTTCCEEC-------TTSSTTCTTCCEEEEES
T ss_pred             CcCCccCcccccCCCCCCEEECCC-CccccCChhHccccccCCEEECCCCccceeC-------hhhccCCCCCCEEECCC
Confidence            999999875 68999999999999 5677776666899999999999998775322       24567888999999999


Q ss_pred             CCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCcccccccccch
Q 005744          391 PDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDE  470 (679)
Q Consensus       391 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  470 (679)
                      |.+..++...                  +..+++|+.|+++.+.....+......+++|+.|++++|.....++...   
T Consensus       162 n~l~~~~~~~------------------l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---  220 (477)
T 2id5_A          162 CNLTSIPTEA------------------LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC---  220 (477)
T ss_dssp             CCCSSCCHHH------------------HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT---
T ss_pred             CcCcccChhH------------------hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc---
Confidence            8877665432                  2334556666666666555554333346889999999988877777665   


Q ss_pred             hhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCcccccc
Q 005744          471 EGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP  550 (679)
Q Consensus       471 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~  550 (679)
                      ....+|++|++++|. +..++.  ..+..+++|++|++++ +.++.++...      ...+++|+.|+++++ +++.+.+
T Consensus       221 ~~~~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~Ls~-n~l~~~~~~~------~~~l~~L~~L~L~~n-~l~~~~~  289 (477)
T 2id5_A          221 LYGLNLTSLSITHCN-LTAVPY--LAVRHLVYLRFLNLSY-NPISTIEGSM------LHELLRLQEIQLVGG-QLAVVEP  289 (477)
T ss_dssp             TTTCCCSEEEEESSC-CCSCCH--HHHTTCTTCCEEECCS-SCCCEECTTS------CTTCTTCCEEECCSS-CCSEECT
T ss_pred             ccCccccEEECcCCc-ccccCH--HHhcCccccCeeECCC-CcCCccChhh------ccccccCCEEECCCC-ccceECH
Confidence            445689999999885 332211  1235788999999998 5677665443      347889999999884 6777744


Q ss_pred             HHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCC
Q 005744          551 FSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLP  606 (679)
Q Consensus       551 ~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp  606 (679)
                       ..+..+++|++|++++| .++.++..            .+..+++|++|++.++|
T Consensus       290 -~~~~~l~~L~~L~L~~N-~l~~~~~~------------~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          290 -YAFRGLNYLRVLNVSGN-QLTTLEES------------VFHSVGNLETLILDSNP  331 (477)
T ss_dssp             -TTBTTCTTCCEEECCSS-CCSCCCGG------------GBSCGGGCCEEECCSSC
T ss_pred             -HHhcCcccCCEEECCCC-cCceeCHh------------HcCCCcccCEEEccCCC
Confidence             34577899999999988 66666532            45678899999998865

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=7e-25  Score=243.49  Aligned_cols=302  Identities=18%  Similarity=0.162  Sum_probs=240.8

Q ss_pred             hcCCCeEEEccCCCcccCCccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCE
Q 005744          208 IDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRT  284 (679)
Q Consensus       208 ~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~  284 (679)
                      ...+++.++++++.+..+|...  .+++|++|++++|.+.+ ++...|..+++|++|++++|.++.+| ..++++++|++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            3578999999999999999865  79999999999999874 44445699999999999999999885 45799999999


Q ss_pred             EEcCCcccCC-ccc-ccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCc
Q 005744          285 LSLENCLVVD-VAI-IGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF  361 (679)
Q Consensus       285 L~L~~~~~~~-~~~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~  361 (679)
                      |++++|.+.. |.. ++++++|++|++++|.++.+|. .++++++|++|++++ +.++.++   ++.+++|+.|++++|.
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~---~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCC---GGGCTTCSEEECCSSC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcC---hhhhhhhhhhhcccCc
Confidence            9999999998 544 6999999999999999997765 589999999999999 5677775   5678999999999987


Q ss_pred             ccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechh
Q 005744          362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYG  441 (679)
Q Consensus       362 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~  441 (679)
                      +.            .+....+|+.|++++|.+..++...                     ..+|+.|.|+++.... +.+
T Consensus       204 l~------------~l~~~~~L~~L~ls~n~l~~~~~~~---------------------~~~L~~L~L~~n~l~~-~~~  249 (597)
T 3oja_B          204 LS------------TLAIPIAVEELDASHNSINVVRGPV---------------------NVELTILKLQHNNLTD-TAW  249 (597)
T ss_dssp             CS------------EEECCTTCSEEECCSSCCCEEECSC---------------------CSCCCEEECCSSCCCC-CGG
T ss_pred             cc------------cccCCchhheeeccCCccccccccc---------------------CCCCCEEECCCCCCCC-Chh
Confidence            64            2344568999999999877655432                     1345556666554443 244


Q ss_pred             HHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCc
Q 005744          442 MKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGK  521 (679)
Q Consensus       442 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~  521 (679)
                      +.. +++|+.|++++|......|..+   ..+++|++|++++|. +..++.   ....+|+|++|++++ +.+..++.. 
T Consensus       250 l~~-l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~-l~~l~~---~~~~l~~L~~L~Ls~-N~l~~i~~~-  319 (597)
T 3oja_B          250 LLN-YPGLVEVDLSYNELEKIMYHPF---VKMQRLERLYISNNR-LVALNL---YGQPIPTLKVLDLSH-NHLLHVERN-  319 (597)
T ss_dssp             GGG-CTTCSEEECCSSCCCEEESGGG---TTCSSCCEEECTTSC-CCEEEC---SSSCCTTCCEEECCS-SCCCCCGGG-
T ss_pred             hcc-CCCCCEEECCCCccCCCCHHHh---cCccCCCEEECCCCC-CCCCCc---ccccCCCCcEEECCC-CCCCccCcc-
Confidence            444 7899999999988766667777   789999999999985 555543   235689999999999 567666533 


Q ss_pred             ccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccc
Q 005744          522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCT  569 (679)
Q Consensus       522 ~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~  569 (679)
                            .+.+++|+.|++++| .++.++    +..+++|+.|++++|+
T Consensus       320 ------~~~l~~L~~L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          320 ------QPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             ------HHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred             ------cccCCCCCEEECCCC-CCCCcC----hhhcCCCCEEEeeCCC
Confidence                  457899999999995 577763    3567899999999875

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.92  E-value=4.1e-26  Score=249.43  Aligned_cols=174  Identities=14%  Similarity=0.127  Sum_probs=132.9

Q ss_pred             CCCceeccCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHhhccCCCcc
Q 005744            6 YSEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRKI   85 (679)
Q Consensus         6 ~~~~~~~~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~W~~~~~~l~~~~~~~~   85 (679)
                      ...+|+|++|+++|||+||+++||+...++++++++++|+++|+|+||||+++|+.|+.++   |+.+ +.+.+... +.
T Consensus       284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~-~~  358 (549)
T 2a5y_B          284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLE-SR  358 (549)
T ss_dssp             CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHH-HH
T ss_pred             CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhHHHhh-cc
Confidence            4468999999999999999999996655678899999999999999999999999998775   4333 33322110 00


Q ss_pred             cccccccceeeeccccCChhhHHHHHH-----------hccccCCCCcccHHhHHHHHhhc--ccccccchHHHHHHHHH
Q 005744           86 QGMDADLSSIELSYEFLKCKEVKSLFQ-----------LCGLLKDGSRIAVDDLLRYVMGL--RLLTNADTLEAARNRVH  152 (679)
Q Consensus        86 ~~~~~~~~~l~~SY~~L~~~~lk~cfl-----------~~~~fp~~~~~~~~~li~~wiae--g~i~~~~~~~~~~~~~~  152 (679)
                       ......+++.+||++||.+ +|.||+           |||+||+|+.|+    +++|+|+  ||+++.......++.+.
T Consensus       359 -~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~  432 (549)
T 2a5y_B          359 -GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD  432 (549)
T ss_dssp             -CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH
T ss_pred             -cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH
Confidence             1223488999999999998 999999           999999999999    8999999  99975431112344444


Q ss_pred             HHHHHHHhccccccCC--CCCceEehhhHHHHHHHHHhccc
Q 005744          153 TLIDNLKSASLLFDGD--SEDHAKMHRIIHAIAVSIAAEKL  191 (679)
Q Consensus       153 ~l~~~L~~~~~~~~~~--~~~~~~mhdli~~l~~~~~~~e~  191 (679)
                       ++++|+++|+++..+  +..+|+|||++|++|+.++.+++
T Consensus       433 -~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~  472 (549)
T 2a5y_B          433 -RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT  472 (549)
T ss_dssp             -HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred             -HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence             899999999998643  45679999999999998877654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.92  E-value=3.3e-23  Score=221.10  Aligned_cols=300  Identities=17%  Similarity=0.119  Sum_probs=199.0

Q ss_pred             CCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCC
Q 005744          210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN  289 (679)
Q Consensus       210 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~  289 (679)
                      .++++++++++.+..+|..  .++|++|++++|.+.+ +|.    .+++|++|++++|.++.+|...   ++|++|++++
T Consensus        71 ~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~  140 (454)
T 1jl5_A           71 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSN  140 (454)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCSCC---TTCCEEECCS
T ss_pred             cCCCEEEecCCccccCCCC--cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccCCC---CCCCEEECcC
Confidence            3567777777777777662  4677777777777764 553    2467777777777777665422   5777778877


Q ss_pred             cccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccC
Q 005744          290 CLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ  369 (679)
Q Consensus       290 ~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~  369 (679)
                      |.+...+.++++++|++|++++|+++.+|..+   .+|++|++++ +.++.+| + ++++++|++|++++|.+....   
T Consensus       141 n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~-n~l~~l~-~-~~~l~~L~~L~l~~N~l~~l~---  211 (454)
T 1jl5_A          141 NQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGN-NQLEELP-E-LQNLPFLTAIYADNNSLKKLP---  211 (454)
T ss_dssp             SCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCS-SCCSSCC-C-CTTCTTCCEEECCSSCCSSCC---
T ss_pred             CCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcC-CcCCcCc-c-ccCCCCCCEEECCCCcCCcCC---
Confidence            77777325777777888888777777776543   4777777777 4566666 3 677777778777777654211   


Q ss_pred             CcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcc
Q 005744          370 SNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRT  449 (679)
Q Consensus       370 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L  449 (679)
                        .      ...+|+.|++++|.+..+|....+++|+.|++..+........+++++.|+++++....+|..    +++|
T Consensus       212 --~------~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~----~~~L  279 (454)
T 1jl5_A          212 --D------LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL----PQSL  279 (454)
T ss_dssp             --C------CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCC----CTTC
T ss_pred             --C------CcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcc----cCcC
Confidence              0      113677777777777766653366777777776555433223346778888877766665543    3678


Q ss_pred             cccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccc-cccceeeccccccccccccCcccCCCCc
Q 005744          450 EDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTF-PLLESLFLHNLINLEKVCDGKVRLNEDD  528 (679)
Q Consensus       450 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~-~~L~~L~l~~c~~L~~~~~~~~~~~~~~  528 (679)
                      +.|++++|.. ..++.      ..++|++|++++|. +..++       .+ ++|++|++++ ++++.++          
T Consensus       280 ~~L~ls~N~l-~~l~~------~~~~L~~L~l~~N~-l~~i~-------~~~~~L~~L~Ls~-N~l~~lp----------  333 (454)
T 1jl5_A          280 TFLDVSENIF-SGLSE------LPPNLYYLNASSNE-IRSLC-------DLPPSLEELNVSN-NKLIELP----------  333 (454)
T ss_dssp             CEEECCSSCC-SEESC------CCTTCCEEECCSSC-CSEEC-------CCCTTCCEEECCS-SCCSCCC----------
T ss_pred             CEEECcCCcc-CcccC------cCCcCCEEECcCCc-CCccc-------CCcCcCCEEECCC-Ccccccc----------
Confidence            8888888753 33332      12678888888875 33332       23 4888888888 5666543          


Q ss_pred             cccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchh
Q 005744          529 KSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKL  573 (679)
Q Consensus       529 ~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~  573 (679)
                      ..+++|+.|++++| +++.+|.     .+++|++|++++| .+..
T Consensus       334 ~~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N-~l~~  371 (454)
T 1jl5_A          334 ALPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYN-PLRE  371 (454)
T ss_dssp             CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSS
T ss_pred             ccCCcCCEEECCCC-ccccccc-----hhhhccEEECCCC-CCCc
Confidence            23578888888885 6777754     3678888888877 3443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=9.2e-24  Score=216.89  Aligned_cols=154  Identities=19%  Similarity=0.322  Sum_probs=109.3

Q ss_pred             ceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEe
Q 005744          233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSL  309 (679)
Q Consensus       233 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l  309 (679)
                      ++++++++++.+. .+|..+   .++|++|++++|.++.+ |..+.++++|++|++++|.+..  |..++++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            5777777777665 666644   35778888888887776 4567888888888888887776  567888888888888


Q ss_pred             cCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEee
Q 005744          310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH  389 (679)
Q Consensus       310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  389 (679)
                      ++|.++.+|..+.  ++|++|++++ +.++.+|+..++++++|++|++++|.+...     ......+..+ +|+.|+++
T Consensus       110 ~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~l-~L~~L~l~  180 (332)
T 2ft3_A          110 SKNHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENS-----GFEPGAFDGL-KLNYLRIS  180 (332)
T ss_dssp             CSSCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGG-----GSCTTSSCSC-CCSCCBCC
T ss_pred             CCCcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccC-----CCCcccccCC-ccCEEECc
Confidence            8888888877655  7888888887 567777776677888888888888765311     0122334444 77777777


Q ss_pred             cCCCccCCcc
Q 005744          390 IPDAQVMPQD  399 (679)
Q Consensus       390 ~~~~~~~~~~  399 (679)
                      +|.+..+|..
T Consensus       181 ~n~l~~l~~~  190 (332)
T 2ft3_A          181 EAKLTGIPKD  190 (332)
T ss_dssp             SSBCSSCCSS
T ss_pred             CCCCCccCcc
Confidence            7766655543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.91  E-value=5.4e-23  Score=211.01  Aligned_cols=154  Identities=20%  Similarity=0.345  Sum_probs=96.7

Q ss_pred             ceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc-cccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEe
Q 005744          233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSL  309 (679)
Q Consensus       233 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l  309 (679)
                      ++++++++++.+. .+|..+   .++|++|++++|.++.+|. .++++++|++|++++|.+..  |..++++++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            4555565555544 455433   2466777777777766643 56677777777777776666  556777777777777


Q ss_pred             cCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEee
Q 005744          310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH  389 (679)
Q Consensus       310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  389 (679)
                      ++|.++.+|..+.  ++|++|++++ +.++.+++..++++++|++|++++|.+...     ......+..+++|+.|+++
T Consensus       108 s~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~l~~L~~L~l~  179 (330)
T 1xku_A          108 SKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSS-----GIENGAFQGMKKLSYIRIA  179 (330)
T ss_dssp             CSSCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCGG-----GBCTTGGGGCTTCCEEECC
T ss_pred             CCCcCCccChhhc--ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCcc-----CcChhhccCCCCcCEEECC
Confidence            7777777666544  5777777776 456666665567777777777777655310     1223456667777777777


Q ss_pred             cCCCccCCc
Q 005744          390 IPDAQVMPQ  398 (679)
Q Consensus       390 ~~~~~~~~~  398 (679)
                      +|.+..+|.
T Consensus       180 ~n~l~~l~~  188 (330)
T 1xku_A          180 DTNITTIPQ  188 (330)
T ss_dssp             SSCCCSCCS
T ss_pred             CCccccCCc
Confidence            766655443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.89  E-value=2e-22  Score=206.90  Aligned_cols=292  Identities=15%  Similarity=0.179  Sum_probs=191.8

Q ss_pred             CCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCC
Q 005744          211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLEN  289 (679)
Q Consensus       211 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~  289 (679)
                      +++.++++++.+..+|..+ .+++++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            5788999999998888766 478999999999887 45444568999999999999999977 77899999999999999


Q ss_pred             cccCC-cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccc--cCcccccCCCCCcEEEccCCcccce
Q 005744          290 CLVVD-VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWK  365 (679)
Q Consensus       290 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~~~~  365 (679)
                      |.+.. |..+.  ++|++|++++|.++.+|.. +.++++|++|++++ +.++.  +++..++.+ +|++|++++|.+...
T Consensus       112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l  187 (332)
T 2ft3_A          112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG-NPLENSGFEPGAFDGL-KLNYLRISEAKLTGI  187 (332)
T ss_dssp             SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS-CCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred             CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCC-CccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence            99988 66665  8999999999999988864 88999999999999 45543  444447777 999999999977532


Q ss_pred             eccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHH
Q 005744          366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKML  445 (679)
Q Consensus       366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~  445 (679)
                      .        ..+  .++|+.|++++|.+..++..                  .+..                        
T Consensus       188 ~--------~~~--~~~L~~L~l~~n~i~~~~~~------------------~l~~------------------------  215 (332)
T 2ft3_A          188 P--------KDL--PETLNELHLDHNKIQAIELE------------------DLLR------------------------  215 (332)
T ss_dssp             C--------SSS--CSSCSCCBCCSSCCCCCCTT------------------SSTT------------------------
T ss_pred             C--------ccc--cCCCCEEECCCCcCCccCHH------------------HhcC------------------------
Confidence            1        111  16888999988877654422                  1111                        


Q ss_pred             hhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCC
Q 005744          446 LKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLN  525 (679)
Q Consensus       446 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~  525 (679)
                      +++|+.|++++|......+..+   ..+++|++|++++|. +..++   .....+++|++|++++ +.++.++...+...
T Consensus       216 l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~lp---~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~  287 (332)
T 2ft3_A          216 YSKLYRLGLGHNQIRMIENGSL---SFLPTLRELHLDNNK-LSRVP---AGLPDLKLLQVVYLHT-NNITKVGVNDFCPV  287 (332)
T ss_dssp             CTTCSCCBCCSSCCCCCCTTGG---GGCTTCCEEECCSSC-CCBCC---TTGGGCTTCCEEECCS-SCCCBCCTTSSSCS
T ss_pred             CCCCCEEECCCCcCCcCChhHh---hCCCCCCEEECCCCc-CeecC---hhhhcCccCCEEECCC-CCCCccChhHcccc
Confidence            3445555555544332222233   445555666655553 22221   1234555666666665 44555543332200


Q ss_pred             CCccccCCccEEEEecCCCcc-ccccHHHHHHhhcCcEEEEcccc
Q 005744          526 EDDKSFSNLRIIKVEGCHRVK-HLFPFSLVKNLLQLQKVKVTDCT  569 (679)
Q Consensus       526 ~~~~~l~~L~~L~l~~c~~L~-~l~~~~~~~~l~~L~~L~i~~c~  569 (679)
                      .....++.|+.|++.+++-.. .+++ ..+..+++|+.+++++|.
T Consensus       288 ~~~~~~~~l~~L~l~~N~~~~~~~~~-~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          288 GFGVKRAYYNGISLFNNPVPYWEVQP-ATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCCSSSCCBSEEECCSSSSCGGGSCG-GGGTTBCCSTTEEC----
T ss_pred             ccccccccccceEeecCcccccccCc-ccccccchhhhhhccccc
Confidence            001125667777777754221 2322 345667777777777664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=7.1e-22  Score=202.66  Aligned_cols=237  Identities=17%  Similarity=0.226  Sum_probs=159.2

Q ss_pred             CCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCC
Q 005744          211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLEN  289 (679)
Q Consensus       211 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~  289 (679)
                      +++.++++++.+..+|..+ .+++++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCeEEEecCCCccccCccC-CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            5788888888888888655 368899999998877 45555568899999999999998877 78889999999999999


Q ss_pred             cccCC-cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccc--cCcccccCCCCCcEEEccCCcccce
Q 005744          290 CLVVD-VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWK  365 (679)
Q Consensus       290 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~~~~  365 (679)
                      |.+.. |..+.  ++|++|++++|.++.++. .+.++++|++|++++| .++.  +.+..++++++|++|++++|.+...
T Consensus       110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l  186 (330)
T 1xku_A          110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTI  186 (330)
T ss_dssp             SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCccccC
Confidence            98887 66554  789999999998887765 4788999999999884 4432  3444478889999999998876521


Q ss_pred             eccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHH
Q 005744          366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKML  445 (679)
Q Consensus       366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~  445 (679)
                      .        ..+  .++|+.|++++|.+..++..                  .+..+++|+.|+++++.....+......
T Consensus       187 ~--------~~~--~~~L~~L~l~~n~l~~~~~~------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  238 (330)
T 1xku_A          187 P--------QGL--PPSLTELHLDGNKITKVDAA------------------SLKGLNNLAKLGLSFNSISAVDNGSLAN  238 (330)
T ss_dssp             C--------SSC--CTTCSEEECTTSCCCEECTG------------------GGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             C--------ccc--cccCCEEECCCCcCCccCHH------------------HhcCCCCCCEEECCCCcCceeChhhccC
Confidence            1        111  26788888888776544221                  1122333444444444333332211112


Q ss_pred             hhcccccccccccCcccccccccchhhccccceEeeecC
Q 005744          446 LKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNG  484 (679)
Q Consensus       446 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  484 (679)
                      +++|+.|++++|.. ..+|..+   ..+++|++|++++|
T Consensus       239 l~~L~~L~L~~N~l-~~lp~~l---~~l~~L~~L~l~~N  273 (330)
T 1xku_A          239 TPHLRELHLNNNKL-VKVPGGL---ADHKYIQVVYLHNN  273 (330)
T ss_dssp             STTCCEEECCSSCC-SSCCTTT---TTCSSCCEEECCSS
T ss_pred             CCCCCEEECCCCcC-ccCChhh---ccCCCcCEEECCCC
Confidence            45555555555532 3444444   44555555555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=9.3e-23  Score=207.13  Aligned_cols=245  Identities=17%  Similarity=0.175  Sum_probs=168.7

Q ss_pred             CCCeEEEccCCCcc---cCCccc-CCcceeeeeecc-CCcccCCCchhhcCCCCccEEEeCCCcCC-cCCccccCCcCCC
Q 005744          210 EAPTAISIPFRGIY---ELPERL-GFLKLKLFLFFT-ENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLR  283 (679)
Q Consensus       210 ~~l~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~  283 (679)
                      .++++|+++++.+.   .+|..+ .+++|++|++++ |.+.+.+|..+ .++++|++|++++|.++ .+|..+.++++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            56788888888875   466666 778888888884 77776777664 77888888888888877 6777788888888


Q ss_pred             EEEcCCcccCC--cccccCCCCCcEEEecCCCCC-ccchhhhcCC-CCCEEcccCCcccc-ccCcccccCCCCCcEEEcc
Q 005744          284 TLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLT-CLKLLDLSNCSKLK-EIRPNVISNLTRLEELYMG  358 (679)
Q Consensus       284 ~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~l~-~lp~~~l~~l~~L~~L~l~  358 (679)
                      +|++++|.+..  |..++++++|++|++++|.++ .+|..++.++ +|++|++++| .+. .+|.. ++.++ |++|+++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~-~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPT-FANLN-LAFVDLS  205 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGG-GGGCC-CSEEECC
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChH-HhCCc-ccEEECc
Confidence            88888888774  677888888888888888777 7777788877 7888888874 444 44444 67776 8888888


Q ss_pred             CCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCccee
Q 005744          359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYL  438 (679)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~  438 (679)
                      +|.+..       .....+..+++|+.|++++|.+...+..                                       
T Consensus       206 ~N~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------------------------------  239 (313)
T 1ogq_A          206 RNMLEG-------DASVLFGSDKNTQKIHLAKNSLAFDLGK---------------------------------------  239 (313)
T ss_dssp             SSEEEE-------CCGGGCCTTSCCSEEECCSSEECCBGGG---------------------------------------
T ss_pred             CCcccC-------cCCHHHhcCCCCCEEECCCCceeeecCc---------------------------------------
Confidence            776542       2234556677777777776654322111                                       


Q ss_pred             chhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeecccccccc
Q 005744          439 GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLE  515 (679)
Q Consensus       439 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~  515 (679)
                         +. .+++|++|++++|.....+|..+   ..+++|++|++++|.....++    ....+++|+.|++.+.+.+.
T Consensus       240 ---~~-~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~ip----~~~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          240 ---VG-LSKNLNGLDLRNNRIYGTLPQGL---TQLKFLHSLNVSFNNLCGEIP----QGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             ---CC-CCTTCCEEECCSSCCEECCCGGG---GGCTTCCEEECCSSEEEEECC----CSTTGGGSCGGGTCSSSEEE
T ss_pred             ---cc-ccCCCCEEECcCCcccCcCChHH---hcCcCCCEEECcCCcccccCC----CCccccccChHHhcCCCCcc
Confidence               11 14567777777776655666666   667777888887775332332    22567777777777755443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.88  E-value=1.9e-22  Score=204.92  Aligned_cols=248  Identities=15%  Similarity=0.159  Sum_probs=191.3

Q ss_pred             cceeeeeeccCCccc--CCCchhhcCCCCccEEEeCC-CcCC-cCCccccCCcCCCEEEcCCcccCC--cccccCCCCCc
Q 005744          232 LKLKLFLFFTENLSL--QIPDPFFEGMTELRVLDLTG-FRFH-SLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLE  305 (679)
Q Consensus       232 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~l~-~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~  305 (679)
                      .+++.|+++++.+.+  .+|..+ .++++|++|++++ |.+. .+|..++++++|++|++++|.+..  |..++++++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            689999999999987  788765 8899999999995 7776 679999999999999999999974  78899999999


Q ss_pred             EEEecCCCCC-ccchhhhcCCCCCEEcccCCcccc-ccCcccccCCC-CCcEEEccCCcccceeccCCcCChhhhhcCCC
Q 005744          306 ILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLK-EIRPNVISNLT-RLEELYMGNSFTQWKVEGQSNASLGELKQLSR  382 (679)
Q Consensus       306 ~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~-~lp~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~  382 (679)
                      +|++++|.++ .+|..++.+++|++|++++| .++ .+|.. +++++ +|++|++++|.+....       +..+..++ 
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~-------~~~~~~l~-  198 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISRNRLTGKI-------PPTFANLN-  198 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCSSEEEEEC-------CGGGGGCC-
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcCCeeeccC-------ChHHhCCc-
Confidence            9999999888 78889999999999999994 555 67666 88887 9999999999775322       34556665 


Q ss_pred             CceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCccc
Q 005744          383 LTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKN  462 (679)
Q Consensus       383 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  462 (679)
                      |+.|++++|.+.....                                         ..+. .+++|+.|++++|.....
T Consensus       199 L~~L~Ls~N~l~~~~~-----------------------------------------~~~~-~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDAS-----------------------------------------VLFG-SDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             CSEEECCSSEEEECCG-----------------------------------------GGCC-TTSCCSEEECCSSEECCB
T ss_pred             ccEEECcCCcccCcCC-----------------------------------------HHHh-cCCCCCEEECCCCceeee
Confidence            8888888776542211                                         1111 156777777777765444


Q ss_pred             ccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeecccccccc-ccccCcccCCCCccccCCccEEEEec
Q 005744          463 VVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLE-KVCDGKVRLNEDDKSFSNLRIIKVEG  541 (679)
Q Consensus       463 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~-~~~~~~~~~~~~~~~l~~L~~L~l~~  541 (679)
                      ++. +   ..+++|++|++++|.....+   ......+++|++|++++ +.++ .+|.        .+.+++|+.|++.+
T Consensus       237 ~~~-~---~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~Ls~-N~l~~~ip~--------~~~l~~L~~l~l~~  300 (313)
T 1ogq_A          237 LGK-V---GLSKNLNGLDLRNNRIYGTL---PQGLTQLKFLHSLNVSF-NNLCGEIPQ--------GGNLQRFDVSAYAN  300 (313)
T ss_dssp             GGG-C---CCCTTCCEEECCSSCCEECC---CGGGGGCTTCCEEECCS-SEEEEECCC--------STTGGGSCGGGTCS
T ss_pred             cCc-c---cccCCCCEEECcCCcccCcC---ChHHhcCcCCCEEECcC-CcccccCCC--------CccccccChHHhcC
Confidence            443 4   67899999999999743333   23457899999999999 4555 3332        35789999999999


Q ss_pred             CCCcccc
Q 005744          542 CHRVKHL  548 (679)
Q Consensus       542 c~~L~~l  548 (679)
                      ++.+...
T Consensus       301 N~~lc~~  307 (313)
T 1ogq_A          301 NKCLCGS  307 (313)
T ss_dssp             SSEEEST
T ss_pred             CCCccCC
Confidence            7766654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=5.1e-22  Score=202.88  Aligned_cols=220  Identities=18%  Similarity=0.221  Sum_probs=115.7

Q ss_pred             CcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEe
Q 005744          231 FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSL  309 (679)
Q Consensus       231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l  309 (679)
                      .++++.|++++|.+. .+|..+ .++++|++|++++|.++.+|..++++++|++|++++|.+.. |..++++++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCch-hcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            455566666665554 455544 34566666666666655556556666666666666665555 555555666666666


Q ss_pred             cCC-CCCccchhhhc---------CCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhc
Q 005744          310 KHS-SIEQLPREIGQ---------LTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQ  379 (679)
Q Consensus       310 ~~~-~l~~lp~~i~~---------L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  379 (679)
                      ++| .+..+|..++.         +++|++|++++ +.++.+|.. ++++++|++|++++|.+..        .+..+..
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~lp~~-l~~l~~L~~L~L~~N~l~~--------l~~~l~~  227 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEW-TGIRSLPAS-IANLQNLKSLKIRNSPLSA--------LGPAIHH  227 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE-ECCCCCCGG-GGGCTTCCEEEEESSCCCC--------CCGGGGG
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcC-CCcCcchHh-hcCCCCCCEEEccCCCCCc--------Cchhhcc
Confidence            554 33355544433         55555555555 344455444 5555555555555554431        1223445


Q ss_pred             CCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccC
Q 005744          380 LSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAG  459 (679)
Q Consensus       380 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  459 (679)
                      +++|+.|++++|....                                         ..|.++.. +++|+.|++++|..
T Consensus       228 l~~L~~L~Ls~n~~~~-----------------------------------------~~p~~~~~-l~~L~~L~L~~n~~  265 (328)
T 4fcg_A          228 LPKLEELDLRGCTALR-----------------------------------------NYPPIFGG-RAPLKRLILKDCSN  265 (328)
T ss_dssp             CTTCCEEECTTCTTCC-----------------------------------------BCCCCTTC-CCCCCEEECTTCTT
T ss_pred             CCCCCEEECcCCcchh-----------------------------------------hhHHHhcC-CCCCCEEECCCCCc
Confidence            5555555555443221                                         11222222 45566666666655


Q ss_pred             cccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccc
Q 005744          460 FKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHN  510 (679)
Q Consensus       460 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~  510 (679)
                      ...+|..+   ..+++|++|++++|+....++.   ....+++|+.+.+..
T Consensus       266 ~~~~p~~~---~~l~~L~~L~L~~n~~~~~iP~---~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          266 LLTLPLDI---HRLTQLEKLDLRGCVNLSRLPS---LIAQLPANCIILVPP  310 (328)
T ss_dssp             CCBCCTTG---GGCTTCCEEECTTCTTCCCCCG---GGGGSCTTCEEECCG
T ss_pred             hhhcchhh---hcCCCCCEEeCCCCCchhhccH---HHhhccCceEEeCCH
Confidence            55555555   5566666666666665554432   234556666665553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.88  E-value=5.2e-22  Score=205.68  Aligned_cols=194  Identities=20%  Similarity=0.229  Sum_probs=139.5

Q ss_pred             eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcc
Q 005744          213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL  291 (679)
Q Consensus       213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~  291 (679)
                      ...+.+++.++.+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++++|.
T Consensus        34 ~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (353)
T 2z80_A           34 GICKGSSGSLNSIPSGLT-EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY  111 (353)
T ss_dssp             SEEECCSTTCSSCCTTCC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             eEeeCCCCCccccccccc-ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence            346777777777776542 47888888887766 45554557788888888888887766 4567788888888888888


Q ss_pred             cCC-ccc-ccCCCCCcEEEecCCCCCccch--hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744          292 VVD-VAI-IGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE  367 (679)
Q Consensus       292 ~~~-~~~-i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (679)
                      +.. +.. ++++++|++|++++|.++.+|.  .+.++++|++|++++|+.++.+++..++++++|++|++++|.+...  
T Consensus       112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--  189 (353)
T 2z80_A          112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY--  189 (353)
T ss_dssp             CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--
T ss_pred             CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc--
Confidence            777 433 7778888888888888887776  5777888888888876567777666677788888888887766432  


Q ss_pred             cCCcCChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEEEeCCc
Q 005744          368 GQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDV  415 (679)
Q Consensus       368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~  415 (679)
                           ....+..+++|+.|++++|.+..++...  .+++|+.|++..+..
T Consensus       190 -----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  234 (353)
T 2z80_A          190 -----EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL  234 (353)
T ss_dssp             -----CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred             -----CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence                 2345667778888888887776666544  467777777765543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.87  E-value=2.7e-21  Score=206.49  Aligned_cols=242  Identities=18%  Similarity=0.245  Sum_probs=175.2

Q ss_pred             CeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCc
Q 005744          212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENC  290 (679)
Q Consensus       212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~  290 (679)
                      .+.++..+..+..+|..+. ++++.|++++|.+.. ++...|.++++|++|++++|.++.++ ..+.++++|++|++++|
T Consensus        45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            4567777777888887553 678888888888764 44444688899999999999888774 67888899999999998


Q ss_pred             ccCC-c-ccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744          291 LVVD-V-AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE  367 (679)
Q Consensus       291 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (679)
                      .+.. + ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+.++.++...+.++++|++|++++|.+.    
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~----  198 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR----  198 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc----
Confidence            8887 3 468888999999999998888776 57888899999998888888888877888899999999888764    


Q ss_pred             cCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhh
Q 005744          368 GQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLK  447 (679)
Q Consensus       368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~  447 (679)
                           .+..+..+++|+.|++++|.+..++..                  .+..+++|+.|.|+++.....+......++
T Consensus       199 -----~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  255 (440)
T 3zyj_A          199 -----EIPNLTPLIKLDELDLSGNHLSAIRPG------------------SFQGLMHLQKLWMIQSQIQVIERNAFDNLQ  255 (440)
T ss_dssp             -----SCCCCTTCSSCCEEECTTSCCCEECTT------------------TTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred             -----cccccCCCcccCEEECCCCccCccChh------------------hhccCccCCEEECCCCceeEEChhhhcCCC
Confidence                 223467788888888888877654322                  223344455555555544444333222356


Q ss_pred             cccccccccccCcccccccccchhhccccceEeeecCC
Q 005744          448 RTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP  485 (679)
Q Consensus       448 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  485 (679)
                      +|+.|++++|......+..+   ..+++|+.|++++|+
T Consensus       256 ~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          256 SLVEINLAHNNLTLLPHDLF---TPLHHLERIHLHHNP  290 (440)
T ss_dssp             TCCEEECTTSCCCCCCTTTT---SSCTTCCEEECCSSC
T ss_pred             CCCEEECCCCCCCccChhHh---ccccCCCEEEcCCCC
Confidence            77777777765443333334   567777777777776

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.87  E-value=3.2e-21  Score=206.68  Aligned_cols=243  Identities=21%  Similarity=0.234  Sum_probs=176.0

Q ss_pred             CCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCC
Q 005744          211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLEN  289 (679)
Q Consensus       211 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~  289 (679)
                      ..+.++.++..+..+|..+ .+++++|++++|.+.+ ++...|.++++|++|++++|.++.+ |..+.++++|++|++++
T Consensus        55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCcEEEECCCCcCccCCCC-CCCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            3466777777888888654 3688999999988875 4444458899999999999998876 46788899999999999


Q ss_pred             cccCC--cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccccee
Q 005744          290 CLVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV  366 (679)
Q Consensus       290 ~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~  366 (679)
                      |.+..  +..++.+++|++|++++|.++.+|. .+.++++|++|++++|+.++.++...+..+++|++|++++|.+..  
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--  210 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--  210 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--
Confidence            98887  3558889999999999999988876 578899999999999888888888778889999999999887642  


Q ss_pred             ccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHh
Q 005744          367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLL  446 (679)
Q Consensus       367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l  446 (679)
                             +..+..+++|+.|++++|.+..++..                  .+..+++|+.|.++++.....+......+
T Consensus       211 -------~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  265 (452)
T 3zyi_A          211 -------MPNLTPLVGLEELEMSGNHFPEIRPG------------------SFHGLSSLKKLWVMNSQVSLIERNAFDGL  265 (452)
T ss_dssp             -------CCCCTTCTTCCEEECTTSCCSEECGG------------------GGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             -------cccccccccccEEECcCCcCcccCcc------------------cccCccCCCEEEeCCCcCceECHHHhcCC
Confidence                   23467788888888888877655332                  12333444455555544444432222235


Q ss_pred             hcccccccccccCcccccccccchhhccccceEeeecCC
Q 005744          447 KRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP  485 (679)
Q Consensus       447 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  485 (679)
                      ++|+.|++++|......+..+   ..+++|++|++++|+
T Consensus       266 ~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          266 ASLVELNLAHNNLSSLPHDLF---TPLRYLVELHLHHNP  301 (452)
T ss_dssp             TTCCEEECCSSCCSCCCTTSS---TTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCcCCccChHHh---ccccCCCEEEccCCC
Confidence            667777777765433223333   556777777777765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.87  E-value=3.3e-21  Score=193.27  Aligned_cols=193  Identities=21%  Similarity=0.316  Sum_probs=125.6

Q ss_pred             cccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCc-CCcC-
Q 005744          197 NVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR-FHSL-  272 (679)
Q Consensus       197 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l-  272 (679)
                      .+..+..+|...++++++|++++|.+..++.. + .+++|++|++++|.+.+..|. .|..+++|++|++++|. ++.+ 
T Consensus        19 ~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~   97 (285)
T 1ozn_A           19 PQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVD   97 (285)
T ss_dssp             CSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCC
T ss_pred             CcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccC
Confidence            33445555555566777777777777666543 2 667777777777766533333 34667777777777775 6665 


Q ss_pred             CccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCC
Q 005744          273 PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNL  349 (679)
Q Consensus       273 p~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l  349 (679)
                      |..+..+++|++|++++|.+..  +..++++++|++|++++|.++.+|.. ++.+++|++|++++ +.++.+++..+..+
T Consensus        98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l  176 (285)
T 1ozn_A           98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGL  176 (285)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTC
T ss_pred             HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCc
Confidence            5567777777777777777666  45567777777777777777766654 66777777777777 45666666556677


Q ss_pred             CCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCc
Q 005744          350 TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ  398 (679)
Q Consensus       350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  398 (679)
                      ++|++|++++|.+...       ....+..+++|+.|++++|.+..++.
T Consensus       177 ~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~  218 (285)
T 1ozn_A          177 HSLDRLLLHQNRVAHV-------HPHAFRDLGRLMTLYLFANNLSALPT  218 (285)
T ss_dssp             TTCCEEECCSSCCCEE-------CTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             cccCEEECCCCccccc-------CHhHccCcccccEeeCCCCcCCcCCH
Confidence            7777777777765432       12345566677777777776665543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=3.1e-21  Score=195.69  Aligned_cols=242  Identities=20%  Similarity=0.188  Sum_probs=143.5

Q ss_pred             EEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC---CccccCCcCCCEEEcCCc
Q 005744          214 AISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL---PSSLGCLINLRTLSLENC  290 (679)
Q Consensus       214 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l---p~~i~~l~~L~~L~L~~~  290 (679)
                      .++.+++.+..+|..+ .+++++|++++|.+. .+|..+|.++++|++|++++|.++.+   |..+..+++|++|++++|
T Consensus        11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             EEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             EEEcCCCCcccCCCCC-CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence            5666666666666543 256777777777665 56666667777777777777776644   455666777777777777


Q ss_pred             ccCC-cccccCCCCCcEEEecCCCCCccch--hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744          291 LVVD-VAIIGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE  367 (679)
Q Consensus       291 ~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (679)
                      .+.. +..+..+++|++|++++|.++.++.  .+..+++|++|++++ +.+...++..++.+++|++|++++|.+...  
T Consensus        89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--  165 (306)
T 2z66_A           89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFNGLSSLEVLKMAGNSFQEN--  165 (306)
T ss_dssp             SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT-SCCEECSTTTTTTCTTCCEEECTTCEEGGG--
T ss_pred             ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC-CcCCccchhhcccCcCCCEEECCCCccccc--
Confidence            7766 6667777777777777777776653  566777777777777 345555544466777777777777755320  


Q ss_pred             cCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhh
Q 005744          368 GQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLK  447 (679)
Q Consensus       368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~  447 (679)
                          .....+..+++|+.|++++|.+..++..                  .+..+++|+.|+++++.....+......++
T Consensus       166 ----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  223 (306)
T 2z66_A          166 ----FLPDIFTELRNLTFLDLSQCQLEQLSPT------------------AFNSLSSLQVLNMSHNNFFSLDTFPYKCLN  223 (306)
T ss_dssp             ----EECSCCTTCTTCCEEECTTSCCCEECTT------------------TTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred             ----cchhHHhhCcCCCEEECCCCCcCCcCHH------------------HhcCCCCCCEEECCCCccCccChhhccCcc
Confidence                0112445566777777776665543211                  122233333444444333333221112245


Q ss_pred             cccccccccccCcccccccccchhhcc-ccceEeeecCC
Q 005744          448 RTEDLHLDELAGFKNVVHELDDEEGFA-RLRHLHVHNGP  485 (679)
Q Consensus       448 ~L~~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~  485 (679)
                      +|+.|++++|......+..+   ..++ +|++|++++|+
T Consensus       224 ~L~~L~L~~N~l~~~~~~~~---~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          224 SLQVLDYSLNHIMTSKKQEL---QHFPSSLAFLNLTQND  259 (306)
T ss_dssp             TCCEEECTTSCCCBCSSSSC---CCCCTTCCEEECTTCC
T ss_pred             cCCEeECCCCCCcccCHHHH---HhhhccCCEEEccCCC
Confidence            66666666665544444444   4443 66666666664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=2.2e-21  Score=198.16  Aligned_cols=218  Identities=22%  Similarity=0.288  Sum_probs=176.6

Q ss_pred             hcCCCeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEE
Q 005744          208 IDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS  286 (679)
Q Consensus       208 ~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  286 (679)
                      ...+++.|++++|.+..+|..+ .+++|++|++++|.+. .+|..+ +.+++|++|++++|.++.+|..++++++|++|+
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELS  156 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence            3578999999999999999877 8999999999999988 888765 889999999999999999999999999999999


Q ss_pred             cCCcccCC--cccccC---------CCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEE
Q 005744          287 LENCLVVD--VAIIGD---------LKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL  355 (679)
Q Consensus       287 L~~~~~~~--~~~i~~---------L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L  355 (679)
                      +++|.+..  |..++.         +++|++|++++|.++.+|..++++++|++|++++ +.+..+|+. ++.+++|++|
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~~l~~L~~L  234 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IHHLPKLEEL  234 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GGGCTTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hccCCCCCEE
Confidence            99987665  666554         9999999999999999999999999999999999 677888886 8999999999


Q ss_pred             EccCCcccceeccCCcCChhhhhcCCCCceEEeecCCC-ccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCC
Q 005744          356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDA-QVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNN  434 (679)
Q Consensus       356 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~  434 (679)
                      ++++|.+...       .+..+..+++|+.|++++|.. ..+|..+                   ..+++|+.|+|++|.
T Consensus       235 ~Ls~n~~~~~-------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~-------------------~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          235 DLRGCTALRN-------YPPIFGGRAPLKRLILKDCSNLLTLPLDI-------------------HRLTQLEKLDLRGCV  288 (328)
T ss_dssp             ECTTCTTCCB-------CCCCTTCCCCCCEEECTTCTTCCBCCTTG-------------------GGCTTCCEEECTTCT
T ss_pred             ECcCCcchhh-------hHHHhcCCCCCCEEECCCCCchhhcchhh-------------------hcCCCCCEEeCCCCC
Confidence            9999876543       334677889999999998754 3444433                   334455555555543


Q ss_pred             -cceechhHHHHhhccccccccc
Q 005744          435 -STYLGYGMKMLLKRTEDLHLDE  456 (679)
Q Consensus       435 -~~~~~~~~~~~l~~L~~L~l~~  456 (679)
                       ...+|.++.. +++|+.+.+..
T Consensus       289 ~~~~iP~~l~~-L~~L~~l~l~~  310 (328)
T 4fcg_A          289 NLSRLPSLIAQ-LPANCIILVPP  310 (328)
T ss_dssp             TCCCCCGGGGG-SCTTCEEECCG
T ss_pred             chhhccHHHhh-ccCceEEeCCH
Confidence             3345666665 56777776654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.86  E-value=1e-22  Score=226.71  Aligned_cols=351  Identities=13%  Similarity=0.022  Sum_probs=183.7

Q ss_pred             CCcceeeeeeccCCcccCCCchhhcCCCC-ccEEEeCCCc-CC--cCCccccCCcCCCEEEcCCcccCC--c----cccc
Q 005744          230 GFLKLKLFLFFTENLSLQIPDPFFEGMTE-LRVLDLTGFR-FH--SLPSSLGCLINLRTLSLENCLVVD--V----AIIG  299 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~-l~--~lp~~i~~l~~L~~L~L~~~~~~~--~----~~i~  299 (679)
                      .+++|++|++++|.+.+..+..+...++. |++|++++|. ++  .++..+.++++|++|++++|.+.+  .    ....
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            46777777777776554333333222333 7777777765 22  233334467777777777776644  1    1344


Q ss_pred             CCCCCcEEEecCCCCC-----ccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCCh
Q 005744          300 DLKKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASL  374 (679)
Q Consensus       300 ~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  374 (679)
                      .+++|++|++++|.++     .++..+.++++|++|++++| .+..++.. ++++++|++|+++......    ......
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~-~~~~~~L~~L~l~~~~~~~----~~~~~~  263 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGF-FKAAANLEEFCGGSLNEDI----GMPEKY  263 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHH-HHHCTTCCEEEECBCCCCT----TCTTSS
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHH-HhhhhHHHhhccccccccc----chHHHH
Confidence            5677777777777665     34445567777777777773 44555543 6777777777776432110    011233


Q ss_pred             hhhhcCCCCceEEeecCCCccCCccc-cccccceeEEEeCCcc-----cCCCCCCCcceEEecCCCcceechhHHHHhhc
Q 005744          375 GELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVW-----SWSDGYETSKTLKLQLNNSTYLGYGMKMLLKR  448 (679)
Q Consensus       375 ~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~-----~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~  448 (679)
                      ..+..+++|+.|+++......++..+ .+++|+.|++..+...     ..+..+++|+.|++..+-.......+...+++
T Consensus       264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~  343 (592)
T 3ogk_B          264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ  343 (592)
T ss_dssp             SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred             HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence            45556667777777665545555544 5667777777555421     12355666777766622111111222233566


Q ss_pred             cccccccc----------ccCcccc--cccccchhhccccceEeeecCCCeeEEEeCCCcc-ccccccceeeccc---cc
Q 005744          449 TEDLHLDE----------LAGFKNV--VHELDDEEGFARLRHLHVHNGPEILHILNSDGRV-GTFPLLESLFLHN---LI  512 (679)
Q Consensus       449 L~~L~l~~----------~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~L~~L~l~~---c~  512 (679)
                      |++|++.+          |..+...  ....   ..+++|++|++..+. +...  ..... ..+++|++|++.+   |+
T Consensus       344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~-l~~~--~~~~l~~~~~~L~~L~l~~~~~~n  417 (592)
T 3ogk_B          344 LKRLRIERGADEQGMEDEEGLVSQRGLIALA---QGCQELEYMAVYVSD-ITNE--SLESIGTYLKNLCDFRLVLLDREE  417 (592)
T ss_dssp             CCEEEEECCCCSSTTSSTTCCCCHHHHHHHH---HHCTTCSEEEEEESC-CCHH--HHHHHHHHCCSCCEEEEEECSCCS
T ss_pred             CCEEEeecCccccccccccCccCHHHHHHHH---hhCccCeEEEeecCC-ccHH--HHHHHHhhCCCCcEEEEeecCCCc
Confidence            77777763          4333321  1111   446777777773332 2110  00011 2366677777763   34


Q ss_pred             cccccccC-cccCCCCccccCCccEEEEecCCC-ccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccc
Q 005744          513 NLEKVCDG-KVRLNEDDKSFSNLRIIKVEGCHR-VKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSIS  590 (679)
Q Consensus       513 ~L~~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~-L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~  590 (679)
                      .++..+.. .++  .....+++|+.|++++|.. ++..........+++|++|++++|. +.......           .
T Consensus       418 ~l~~~p~~~~~~--~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~-----------~  483 (592)
T 3ogk_B          418 RITDLPLDNGVR--SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLME-----------F  483 (592)
T ss_dssp             CCSSCCCHHHHH--HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHH-----------H
T ss_pred             cccCchHHHHHH--HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHH-----------H
Confidence            44432110 000  0023466777777766553 3332122222336667777777663 32211000           1


Q ss_pred             cccccccceeeccCCC
Q 005744          591 GVYFRKLHFLKLQHLP  606 (679)
Q Consensus       591 l~~l~~L~~L~l~~cp  606 (679)
                      +..+++|++|+|++|+
T Consensus       484 ~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          484 SRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             HTCCTTCCEEEEESCC
T ss_pred             HhcCcccCeeeccCCC
Confidence            2356677777777765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=9.9e-21  Score=196.04  Aligned_cols=226  Identities=21%  Similarity=0.216  Sum_probs=162.5

Q ss_pred             CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc-cccCCcCCCEEEcCCcccCC--cccccCCCCCcE
Q 005744          230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEI  306 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~  306 (679)
                      .++...+.+++++.+. .+|..+   .++|++|++++|.++.+|. .+.++++|++|++++|.+..  +..++++++|++
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            4555556778877776 788765   3589999999999998865 79999999999999999888  567999999999


Q ss_pred             EEecCCCCCccchh-hhcCCCCCEEcccCCccccccCc-ccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCc
Q 005744          307 LSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLT  384 (679)
Q Consensus       307 L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~  384 (679)
                      |++++|.++.+|.. ++++++|++|++++ +.++.+|. ..++++++|++|++++|......      ....+..+++|+
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~------~~~~~~~l~~L~  177 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKI------QRKDFAGLTFLE  177 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE------CTTTTTTCCEEE
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCcccccc------CHHHccCCCCCC
Confidence            99999999999887 88999999999999 67888887 55889999999999998422111      224567788999


Q ss_pred             eEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCccccc
Q 005744          385 TLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVV  464 (679)
Q Consensus       385 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  464 (679)
                      .|++++|.+......                  .+..+++|+.|+++++.....+......+++|+.|++++|......+
T Consensus       178 ~L~l~~n~l~~~~~~------------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  239 (353)
T 2z80_A          178 ELEIDASDLQSYEPK------------------SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF  239 (353)
T ss_dssp             EEEEEETTCCEECTT------------------TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred             EEECCCCCcCccCHH------------------HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence            999998877654221                  23344455556666665555565555556788888888776543332


Q ss_pred             ccccchhhccccceEeeecC
Q 005744          465 HELDDEEGFARLRHLHVHNG  484 (679)
Q Consensus       465 ~~~~~~~~l~~L~~L~l~~~  484 (679)
                      ..+......+.++.++++++
T Consensus       240 ~~l~~~~~~~~l~~l~L~~~  259 (353)
T 2z80_A          240 SELSTGETNSLIKKFTFRNV  259 (353)
T ss_dssp             C------CCCCCCEEEEESC
T ss_pred             cccccccccchhhccccccc
Confidence            22211122344455554443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.84  E-value=4.6e-23  Score=222.15  Aligned_cols=356  Identities=15%  Similarity=0.104  Sum_probs=172.8

Q ss_pred             CCCeEEEccCCCcccCCcc--c-CCcceeeeeeccCCcccC----CCchhhcCCCCccEEEeCCCcCCcC-Cccc-cCCc
Q 005744          210 EAPTAISIPFRGIYELPER--L-GFLKLKLFLFFTENLSLQ----IPDPFFEGMTELRVLDLTGFRFHSL-PSSL-GCLI  280 (679)
Q Consensus       210 ~~l~~l~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i-~~l~  280 (679)
                      +++++|+++++.+...+..  + .+++|++|++++|.+...    ++. .+..+++|++|++++|.+... +..+ ..+.
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            4566677776666433211  2 566677777776665421    222 235566777777777666531 2111 2233


Q ss_pred             ----CCCEEEcCCcccCC------cccccCCCCCcEEEecCCCCCcc-chhhh-----cCCCCCEEcccCCccccccC--
Q 005744          281 ----NLRTLSLENCLVVD------VAIIGDLKKLEILSLKHSSIEQL-PREIG-----QLTCLKLLDLSNCSKLKEIR--  342 (679)
Q Consensus       281 ----~L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~l-p~~i~-----~L~~L~~L~l~~~~~l~~lp--  342 (679)
                          +|++|++++|.+..      +..+.++++|++|++++|.++.. +..+.     ..++|++|++++| .++...  
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~  160 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCE  160 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHH
Confidence                57777777766652      45566666777777777665521 11121     2445777777664 333321  


Q ss_pred             --cccccCCCCCcEEEccCCcccceeccCCcCChhhhh-cCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCC
Q 005744          343 --PNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELK-QLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWS  419 (679)
Q Consensus       343 --~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  419 (679)
                        ...+..+++|++|++++|.+.....   ......+. ..++|+.|++++|.+.......              ....+
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~---~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~--------------l~~~l  223 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINEAGV---RVLCQGLKDSPCQLEALKLESCGVTSDNCRD--------------LCGIV  223 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHH---HHHHHHHHHSCCCCCEEECTTSCCBTTHHHH--------------HHHHH
T ss_pred             HHHHHHhhCCCCCEEECcCCCcchHHH---HHHHHHHhcCCCCceEEEccCCCCcHHHHHH--------------HHHHH
Confidence              1124455667777766665431100   00001111 2446666666666554321000              00011


Q ss_pred             CCCCCcceEEecCCCcceec-----hhHHHHhhcccccccccccCccc----ccccccchhhccccceEeeecCCCeeEE
Q 005744          420 DGYETSKTLKLQLNNSTYLG-----YGMKMLLKRTEDLHLDELAGFKN----VVHELDDEEGFARLRHLHVHNGPEILHI  490 (679)
Q Consensus       420 ~~~~~l~~L~L~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~L~~L~l~~~~~l~~~  490 (679)
                      ..+++|+.|+++++......     ..+...+++|++|++++|.....    ++..+   ..+++|++|++++|..-...
T Consensus       224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l---~~~~~L~~L~Ls~n~i~~~~  300 (461)
T 1z7x_W          224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL---RAKESLKELSLAGNELGDEG  300 (461)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH---HHCTTCCEEECTTCCCHHHH
T ss_pred             HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH---hhCCCcceEECCCCCCchHH
Confidence            22344555555544322210     11111145677777776643322    33333   45677777777766411000


Q ss_pred             EeCCC--ccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHH----hhcCcEEE
Q 005744          491 LNSDG--RVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKN----LLQLQKVK  564 (679)
Q Consensus       491 ~~~~~--~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~----l~~L~~L~  564 (679)
                      .....  .....++|++|++++|. ++......++  .....+++|++|++++| .+++..+......    .++|++|+
T Consensus       301 ~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~--~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~  376 (461)
T 1z7x_W          301 ARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFS--SVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLW  376 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH--HHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             HHHHHHHhccCCccceeeEcCCCC-CchHHHHHHH--HHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEE
Confidence            00000  00122577777777743 4332111111  11234577777887775 4554422221122    45778888


Q ss_pred             Ecccccch-----hhhccccccccCCCCccccccccccceeeccCC
Q 005744          565 VTDCTNLK-----LIVGKESENSAHKNGSISGVYFRKLHFLKLQHL  605 (679)
Q Consensus       565 i~~c~~L~-----~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c  605 (679)
                      +++| .+.     .++.             .+..+++|++|++++|
T Consensus       377 L~~n-~i~~~~~~~l~~-------------~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          377 LADC-DVSDSSCSSLAA-------------TLLANHSLRELDLSNN  408 (461)
T ss_dssp             CTTS-CCCHHHHHHHHH-------------HHHHCCCCCEEECCSS
T ss_pred             CCCC-CCChhhHHHHHH-------------HHHhCCCccEEECCCC
Confidence            8777 344     2322             3446777788877776

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.84  E-value=6.4e-20  Score=183.86  Aligned_cols=175  Identities=19%  Similarity=0.285  Sum_probs=145.8

Q ss_pred             CeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCc
Q 005744          212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC  290 (679)
Q Consensus       212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~  290 (679)
                      -+.++.+++.+..+|..+ .++|++|++++|.+. .++...|..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus        13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            367888888898888654 578999999999887 45555568999999999999999877 778999999999999999


Q ss_pred             c-cCC--cccccCCCCCcEEEecCCCCCcc-chhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccccee
Q 005744          291 L-VVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV  366 (679)
Q Consensus       291 ~-~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~  366 (679)
                      . +..  +..+..+++|++|++++|.++.+ |..+.++++|++|++++ +.++.+++..++.+++|++|++++|.+....
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCcccccC
Confidence            7 666  67899999999999999999877 45688999999999999 6788888777889999999999999775322


Q ss_pred             ccCCcCChhhhhcCCCCceEEeecCCCccC
Q 005744          367 EGQSNASLGELKQLSRLTTLEVHIPDAQVM  396 (679)
Q Consensus       367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  396 (679)
                             ...+..+++|+.|++++|.+..+
T Consensus       170 -------~~~~~~l~~L~~L~l~~n~l~~~  192 (285)
T 1ozn_A          170 -------ERAFRGLHSLDRLLLHQNRVAHV  192 (285)
T ss_dssp             -------TTTTTTCTTCCEEECCSSCCCEE
T ss_pred             -------HHHhcCccccCEEECCCCccccc
Confidence                   13467788999999998877654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=4.6e-20  Score=187.02  Aligned_cols=261  Identities=16%  Similarity=0.158  Sum_probs=197.9

Q ss_pred             cccchhhhhhhhcCCCeEEEccCCCcccCCccc--CCcceeeeeeccCCccc--CCCchhhcCCCCccEEEeCCCcCCcC
Q 005744          197 NVADLKEELDKIDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSL--QIPDPFFEGMTELRVLDLTGFRFHSL  272 (679)
Q Consensus       197 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~l~~l  272 (679)
                      .+..++.+|...++++++|++++|.+..+|...  .+++|++|++++|.+..  ..+..+ ..+++|++|++++|.++.+
T Consensus        15 ~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l   93 (306)
T 2z66_A           15 NSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITM   93 (306)
T ss_dssp             CSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEE
T ss_pred             CCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccC
Confidence            445566777766789999999999999998864  89999999999998762  224444 5799999999999999999


Q ss_pred             CccccCCcCCCEEEcCCcccCC-c--ccccCCCCCcEEEecCCCCCcc-chhhhcCCCCCEEcccCCccccc--cCcccc
Q 005744          273 PSSLGCLINLRTLSLENCLVVD-V--AIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKE--IRPNVI  346 (679)
Q Consensus       273 p~~i~~l~~L~~L~L~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~--lp~~~l  346 (679)
                      |..+..+++|++|++++|.+.. +  ..+.++++|++|++++|.+... |..+..+++|++|++++| .+..  +|.. +
T Consensus        94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~  171 (306)
T 2z66_A           94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDI-F  171 (306)
T ss_dssp             EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSC-C
T ss_pred             hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccchhH-H
Confidence            9999999999999999999988 4  5799999999999999998854 556889999999999995 5554  4544 8


Q ss_pred             cCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEEEeCCccc----CCC
Q 005744          347 SNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDVWS----WSD  420 (679)
Q Consensus       347 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~----~~~  420 (679)
                      +.+++|++|++++|.+...       ....+..+++|+.|++++|.+..++...  .+++|+.|++..+.+..    .+.
T Consensus       172 ~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  244 (306)
T 2z66_A          172 TELRNLTFLDLSQCQLEQL-------SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  244 (306)
T ss_dssp             TTCTTCCEEECTTSCCCEE-------CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred             hhCcCCCEEECCCCCcCCc-------CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence            9999999999999987542       2346778899999999999998877643  67888888887665432    334


Q ss_pred             CC-CCcceEEecCCCcceec--hhHHHHhhcccccccccccCcccccccc
Q 005744          421 GY-ETSKTLKLQLNNSTYLG--YGMKMLLKRTEDLHLDELAGFKNVVHEL  467 (679)
Q Consensus       421 ~~-~~l~~L~L~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~  467 (679)
                      .+ ++|+.|+++++......  .++...+...+.+.+..+...-..|..+
T Consensus       245 ~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~  294 (306)
T 2z66_A          245 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK  294 (306)
T ss_dssp             CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred             hhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhh
Confidence            44 47888888876654321  2333334455555444333333334333

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.83  E-value=1.7e-21  Score=217.01  Aligned_cols=130  Identities=20%  Similarity=0.229  Sum_probs=71.6

Q ss_pred             CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCC-cCCc--CCccccCCcCCCEEEcCCcccCC--cccc----cC
Q 005744          230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGF-RFHS--LPSSLGCLINLRTLSLENCLVVD--VAII----GD  300 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~--lp~~i~~l~~L~~L~L~~~~~~~--~~~i----~~  300 (679)
                      .+++|++|++++|.+.+..+..+...+++|++|++++| .++.  ++..+.++++|++|++++|.+.+  +..+    ..
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            45666666666666554444444335666666666666 3432  44444456666677766666544  2222    24


Q ss_pred             CCCCcEEEecCCC--CC--ccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCC
Q 005744          301 LKKLEILSLKHSS--IE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS  360 (679)
Q Consensus       301 L~~L~~L~l~~~~--l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~  360 (679)
                      +++|++|++++|.  +.  .++..+..+++|++|++++|..++.++.. +.++++|++|+++.+
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGY  245 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBC
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccc
Confidence            5566666666664  22  22222344566666666666555554433 556666666665443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.83  E-value=6.8e-20  Score=195.68  Aligned_cols=208  Identities=20%  Similarity=0.277  Sum_probs=172.7

Q ss_pred             EecccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC
Q 005744          195 IQNVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL  272 (679)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l  272 (679)
                      ...+..+..+|.....+++.|++++|.+..++.. + .+++|++|++++|.+. .++...|.++++|++|++++|.++.+
T Consensus        49 ~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~  127 (440)
T 3zyj_A           49 ICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTI  127 (440)
T ss_dssp             ECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSC
T ss_pred             EeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCee
Confidence            3455677778887788999999999999887643 3 8999999999999987 55656679999999999999999998


Q ss_pred             Cc-cccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCC-CCCccch-hhhcCCCCCEEcccCCccccccCccccc
Q 005744          273 PS-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHS-SIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVIS  347 (679)
Q Consensus       273 p~-~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~  347 (679)
                      |. .+..+++|++|++++|.+..  +..+.++++|++|++++| .+..+|. .+.++++|++|++++ +.++.+|.  +.
T Consensus       128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~  204 (440)
T 3zyj_A          128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPN--LT  204 (440)
T ss_dssp             CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT-SCCSSCCC--CT
T ss_pred             CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC-CcCccccc--cC
Confidence            75 68999999999999999988  457999999999999995 7777776 588999999999999 67888885  88


Q ss_pred             CCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEEEeC
Q 005744          348 NLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIG  413 (679)
Q Consensus       348 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~  413 (679)
                      .+++|++|++++|.+....       ...+..+++|+.|++++|.+..++...  .+++|+.|++..+
T Consensus       205 ~l~~L~~L~Ls~N~l~~~~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          205 PLIKLDELDLSGNHLSAIR-------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             TCSSCCEEECTTSCCCEEC-------TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred             CCcccCEEECCCCccCccC-------hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence            9999999999999876432       356788999999999999887665442  4555555555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.83  E-value=2.3e-19  Score=197.24  Aligned_cols=260  Identities=20%  Similarity=0.151  Sum_probs=194.9

Q ss_pred             cCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcC
Q 005744          209 DEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLE  288 (679)
Q Consensus       209 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~  288 (679)
                      ..+++.++++++.+..+|..+. ++|++|++++|.+. .+|.    .+++|++|++++|.++.+|.   .+++|++|+++
T Consensus        39 ~~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           39 NNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF  109 (622)
T ss_dssp             HHCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred             CCCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence            3468899999999999988665 89999999999877 6775    57899999999999999987   67899999999


Q ss_pred             CcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744          289 NCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE  367 (679)
Q Consensus       289 ~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (679)
                      +|.+.. |.   .+.+|++|++++|+++.+|..   +++|++|++++ +.++.+|..    +.+|+.|++++|.+..   
T Consensus       110 ~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~-N~l~~l~~~----~~~L~~L~L~~N~l~~---  175 (622)
T 3g06_A          110 SNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPAL----PSELCKLWAYNNQLTS---  175 (622)
T ss_dssp             SCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS-SCCSCCCCC----CTTCCEEECCSSCCSC---
T ss_pred             CCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcC-CcCCCcCCc----cCCCCEEECCCCCCCC---
Confidence            999888 54   678899999999999999874   48899999998 577777652    4688899999987742   


Q ss_pred             cCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhh
Q 005744          368 GQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLK  447 (679)
Q Consensus       368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~  447 (679)
                            +.  ..+++|+.|++++|.+..++..  +++|                    +.|.++++....+|..    ++
T Consensus       176 ------l~--~~~~~L~~L~Ls~N~l~~l~~~--~~~L--------------------~~L~L~~N~l~~l~~~----~~  221 (622)
T 3g06_A          176 ------LP--MLPSGLQELSVSDNQLASLPTL--PSEL--------------------YKLWAYNNRLTSLPAL----PS  221 (622)
T ss_dssp             ------CC--CCCTTCCEEECCSSCCSCCCCC--CTTC--------------------CEEECCSSCCSSCCCC----CT
T ss_pred             ------Cc--ccCCCCcEEECCCCCCCCCCCc--cchh--------------------hEEECcCCcccccCCC----CC
Confidence                  11  3467889999998888766543  2344                    4444444444444432    46


Q ss_pred             cccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCC
Q 005744          448 RTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNED  527 (679)
Q Consensus       448 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~  527 (679)
                      +|+.|++++|.. +.+|      ..+++|++|++++|. +..++.      .+++|++|++++ ++++.+|..       
T Consensus       222 ~L~~L~Ls~N~L-~~lp------~~l~~L~~L~Ls~N~-L~~lp~------~~~~L~~L~Ls~-N~L~~lp~~-------  279 (622)
T 3g06_A          222 GLKELIVSGNRL-TSLP------VLPSELKELMVSGNR-LTSLPM------LPSGLLSLSVYR-NQLTRLPES-------  279 (622)
T ss_dssp             TCCEEECCSSCC-SCCC------CCCTTCCEEECCSSC-CSCCCC------CCTTCCEEECCS-SCCCSCCGG-------
T ss_pred             CCCEEEccCCcc-CcCC------CCCCcCcEEECCCCC-CCcCCc------ccccCcEEeCCC-CCCCcCCHH-------
Confidence            788888888753 4444      245788999998884 443322      578899999988 577766532       


Q ss_pred             ccccCCccEEEEecCCCcccc
Q 005744          528 DKSFSNLRIIKVEGCHRVKHL  548 (679)
Q Consensus       528 ~~~l~~L~~L~l~~c~~L~~l  548 (679)
                      ...+++|+.|+++++ .+...
T Consensus       280 l~~l~~L~~L~L~~N-~l~~~  299 (622)
T 3g06_A          280 LIHLSSETTVNLEGN-PLSER  299 (622)
T ss_dssp             GGGSCTTCEEECCSC-CCCHH
T ss_pred             HhhccccCEEEecCC-CCCCc
Confidence            457899999999985 45544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.83  E-value=8.5e-20  Score=195.63  Aligned_cols=209  Identities=20%  Similarity=0.247  Sum_probs=171.8

Q ss_pred             EecccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC
Q 005744          195 IQNVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL  272 (679)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l  272 (679)
                      ...+..+..+|...+.+++.|++++|.+..++.. + .+++|++|++++|.+.+ ++...|.++++|++|++++|.++.+
T Consensus        60 ~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~  138 (452)
T 3zyi_A           60 VCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVI  138 (452)
T ss_dssp             ECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSBC
T ss_pred             EECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEEECCCCcCCcc
Confidence            3455667777777778999999999999877543 4 89999999999999874 4545569999999999999999988


Q ss_pred             Ccc-ccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCC-CCCccch-hhhcCCCCCEEcccCCccccccCccccc
Q 005744          273 PSS-LGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHS-SIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVIS  347 (679)
Q Consensus       273 p~~-i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~  347 (679)
                      |.. +..+++|++|++++|.+..  +..+.++++|++|++++| .+..+|. .+..+++|++|++++ +.++.+|.  +.
T Consensus       139 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~  215 (452)
T 3zyi_A          139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPN--LT  215 (452)
T ss_dssp             CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCC--CT
T ss_pred             ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-Cccccccc--cc
Confidence            654 8899999999999999988  457999999999999995 7888876 488999999999999 67888875  88


Q ss_pred             CCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEEEeCC
Q 005744          348 NLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGD  414 (679)
Q Consensus       348 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~  414 (679)
                      .+++|++|++++|.+...       ....+..+++|+.|++++|.+..++...  .+++|+.|++..+.
T Consensus       216 ~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          216 PLVGLEELEMSGNHFPEI-------RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             TCTTCCEEECTTSCCSEE-------CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ccccccEEECcCCcCccc-------CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence            999999999999987643       2357888999999999999887665432  45555555554443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.82  E-value=2e-21  Score=197.89  Aligned_cols=286  Identities=16%  Similarity=0.107  Sum_probs=197.8

Q ss_pred             CeEEEccCCCcccCCccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCC
Q 005744          212 PTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN  289 (679)
Q Consensus       212 l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~  289 (679)
                      +...+++.+.+...+...  .+++|++|++++|.+.+ ++...|..+++|++|++++|.++.+++ +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence            344455555554333333  56788888888888764 454455888888888888888877665 88888888888888


Q ss_pred             cccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccC
Q 005744          290 CLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ  369 (679)
Q Consensus       290 ~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~  369 (679)
                      |.+....   ..++|++|++++|.++.++.  ..+++|++|++++ +.++.+++..++.+++|++|++++|.+....   
T Consensus        90 n~l~~l~---~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---  160 (317)
T 3o53_A           90 NYVQELL---VGPSIETLHAANNNISRVSC--SRGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTVN---  160 (317)
T ss_dssp             SEEEEEE---ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCCCEEE---
T ss_pred             Ccccccc---CCCCcCEEECCCCccCCcCc--cccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCCCccc---
Confidence            8876621   33788888888888887764  3477888888888 5677777666788888888888888775432   


Q ss_pred             CcCChhhh-hcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhc
Q 005744          370 SNASLGEL-KQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKR  448 (679)
Q Consensus       370 ~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~  448 (679)
                          ...+ ..+++|+.|++++|.+..++...                    .+++|+.|+++++....+|..+.. +++
T Consensus       161 ----~~~~~~~l~~L~~L~L~~N~l~~~~~~~--------------------~l~~L~~L~Ls~N~l~~l~~~~~~-l~~  215 (317)
T 3o53_A          161 ----FAELAASSDTLEHLNLQYNFIYDVKGQV--------------------VFAKLKTLDLSSNKLAFMGPEFQS-AAG  215 (317)
T ss_dssp             ----GGGGGGGTTTCCEEECTTSCCCEEECCC--------------------CCTTCCEEECCSSCCCEECGGGGG-GTT
T ss_pred             ----HHHHhhccCcCCEEECCCCcCccccccc--------------------ccccCCEEECCCCcCCcchhhhcc-cCc
Confidence                2233 36788888888888776553332                    245666667777766667666554 789


Q ss_pred             ccccccccccCcccccccccchhhccccceEeeecCCCe-eEEEeCCCccccccccceeeccccccccccccCcccCCCC
Q 005744          449 TEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEI-LHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNED  527 (679)
Q Consensus       449 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~  527 (679)
                      |+.|++++|.. ..+|..+   ..+++|++|++++|+.. ..+   ......+++|+.|++.+++.++.....       
T Consensus       216 L~~L~L~~N~l-~~l~~~~---~~l~~L~~L~l~~N~~~~~~~---~~~~~~~~~L~~l~l~~~~~l~~~~~~-------  281 (317)
T 3o53_A          216 VTWISLRNNKL-VLIEKAL---RFSQNLEHFDLRGNGFHCGTL---RDFFSKNQRVQTVAKQTVKKLTGQNEE-------  281 (317)
T ss_dssp             CSEEECTTSCC-CEECTTC---CCCTTCCEEECTTCCCBHHHH---HHHHHTCHHHHHHHHHHHHHHHSSSSC-------
T ss_pred             ccEEECcCCcc-cchhhHh---hcCCCCCEEEccCCCccCcCH---HHHHhccccceEEECCCchhccCCchh-------
Confidence            99999999864 5677777   77899999999999743 111   123367889999999987777654322       


Q ss_pred             ccccCCccEEEEecCCCccc
Q 005744          528 DKSFSNLRIIKVEGCHRVKH  547 (679)
Q Consensus       528 ~~~l~~L~~L~l~~c~~L~~  547 (679)
                      ....+.+....-..|..+..
T Consensus       282 ~~~~~~~~~~~~~cc~~l~~  301 (317)
T 3o53_A          282 ECTVPTLGHYGAYCCEDLPA  301 (317)
T ss_dssp             CCSSTTCEEETTEEEBCCTT
T ss_pred             ccCCCceecccceeeccCCh
Confidence            22234444444445666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=3.4e-19  Score=195.88  Aligned_cols=246  Identities=17%  Similarity=0.081  Sum_probs=196.3

Q ss_pred             ccchhhhhhhhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCcccc
Q 005744          198 VADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLG  277 (679)
Q Consensus       198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~  277 (679)
                      ++.+..+|....++++.|++++|.+..+|.  .+++|++|++++|.+. .+|.    .+++|++|++++|.++.+|.   
T Consensus        49 ~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~---  118 (622)
T 3g06_A           49 ESGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA---  118 (622)
T ss_dssp             SSCCSCCCSCCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC---
T ss_pred             CCCcCccChhhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC---
Confidence            344556666556899999999999999988  6899999999999976 6775    68999999999999999987   


Q ss_pred             CCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEE
Q 005744          278 CLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELY  356 (679)
Q Consensus       278 ~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~  356 (679)
                      .+.+|++|++++|.+.. |..   +++|++|++++|.++.+|.   .+.+|+.|++++ +.++.+|    ..+++|+.|+
T Consensus       119 ~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~-N~l~~l~----~~~~~L~~L~  187 (622)
T 3g06_A          119 LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYN-NQLTSLP----MLPSGLQELS  187 (622)
T ss_dssp             CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCC----CCCTTCCEEE
T ss_pred             CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCC-CCCCCCc----ccCCCCcEEE
Confidence            67899999999999988 554   4899999999999999886   357899999999 6788887    3468999999


Q ss_pred             ccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcc
Q 005744          357 MGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNST  436 (679)
Q Consensus       357 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~  436 (679)
                      +++|.+....           ..+++|+.|++++|.+..++..  +++|+.|++..+.+......+++|+.|++++|...
T Consensus       188 Ls~N~l~~l~-----------~~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~  254 (622)
T 3g06_A          188 VSDNQLASLP-----------TLPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT  254 (622)
T ss_dssp             CCSSCCSCCC-----------CCCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             CCCCCCCCCC-----------CccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCC
Confidence            9999875311           1247899999999999887764  47788888877665444455677888888887776


Q ss_pred             eechhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCC
Q 005744          437 YLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP  485 (679)
Q Consensus       437 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  485 (679)
                      .+|.    .+++|+.|++++|.. ..+|..+   ..+++|+.|++++|+
T Consensus       255 ~lp~----~~~~L~~L~Ls~N~L-~~lp~~l---~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          255 SLPM----LPSGLLSLSVYRNQL-TRLPESL---IHLSSETTVNLEGNP  295 (622)
T ss_dssp             CCCC----CCTTCCEEECCSSCC-CSCCGGG---GGSCTTCEEECCSCC
T ss_pred             cCCc----ccccCcEEeCCCCCC-CcCCHHH---hhccccCEEEecCCC
Confidence            6665    257788888887754 4666666   678888888888876

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.82  E-value=7.3e-22  Score=212.74  Aligned_cols=368  Identities=17%  Similarity=0.090  Sum_probs=235.7

Q ss_pred             hhcCCCeEEEccCCCcc-----cCCccc-CCcceeeeeeccCCcccCCCchhhcCCC----CccEEEeCCCcCC-----c
Q 005744          207 KIDEAPTAISIPFRGIY-----ELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMT----ELRVLDLTGFRFH-----S  271 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~l~-----~  271 (679)
                      ...++++++++++|.+.     .++..+ .+++|++|++++|.+....+..++..++    +|++|++++|.++     .
T Consensus        25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~  104 (461)
T 1z7x_W           25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  104 (461)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence            45678999999999986     345555 7899999999999887555555666676    7999999999988     4


Q ss_pred             CCccccCCcCCCEEEcCCcccCC--cccc-----cCCCCCcEEEecCCCCCc-----cchhhhcCCCCCEEcccCCcccc
Q 005744          272 LPSSLGCLINLRTLSLENCLVVD--VAII-----GDLKKLEILSLKHSSIEQ-----LPREIGQLTCLKLLDLSNCSKLK  339 (679)
Q Consensus       272 lp~~i~~l~~L~~L~L~~~~~~~--~~~i-----~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~  339 (679)
                      +|..+..+++|++|++++|.+..  +..+     ....+|++|++++|.++.     ++..+..+++|++|++++| .++
T Consensus       105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~  183 (461)
T 1z7x_W          105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN-DIN  183 (461)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS-BCH
T ss_pred             HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC-Ccc
Confidence            68889999999999999999875  3333     236689999999998884     5667888999999999995 455


Q ss_pred             ccCccccc-----CCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCC
Q 005744          340 EIRPNVIS-----NLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGD  414 (679)
Q Consensus       340 ~lp~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  414 (679)
                      ......+.     ..++|++|++++|.+....   .......+..+++|++|++++|.+.......    +         
T Consensus       184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~----l---------  247 (461)
T 1z7x_W          184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDN---CRDLCGIVASKASLRELALGSNKLGDVGMAE----L---------  247 (461)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH---HHHHHHHHHHCTTCCEEECCSSBCHHHHHHH----H---------
T ss_pred             hHHHHHHHHHHhcCCCCceEEEccCCCCcHHH---HHHHHHHHHhCCCccEEeccCCcCChHHHHH----H---------
Confidence            44332232     3669999999999764210   0012456778899999999988764321000    0         


Q ss_pred             cccCCCCCCCcceEEecCCCcce-----echhHHHHhhcccccccccccCcccccccccc--hhhccccceEeeecCCCe
Q 005744          415 VWSWSDGYETSKTLKLQLNNSTY-----LGYGMKMLLKRTEDLHLDELAGFKNVVHELDD--EEGFARLRHLHVHNGPEI  487 (679)
Q Consensus       415 ~~~~~~~~~~l~~L~L~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l  487 (679)
                      .......+++++.|+++++....     ++..+.. +++|++|++++|......+..+..  ....++|++|++++|...
T Consensus       248 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  326 (461)
T 1z7x_W          248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT  326 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence            00011234566666666665443     3333333 578888888887643322222210  012368999999888621


Q ss_pred             eEEEe-CCCccccccccceeeccccccccccccCcccCCCCc-cccCCccEEEEecCCCccc-----cccHHHHHHhhcC
Q 005744          488 LHILN-SDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDD-KSFSNLRIIKVEGCHRVKH-----LFPFSLVKNLLQL  560 (679)
Q Consensus       488 ~~~~~-~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~L~~-----l~~~~~~~~l~~L  560 (679)
                      ..-.. .......+++|++|+++++ .+.......+.  ... ...++|++|++++| .++.     + + ..+..+++|
T Consensus       327 ~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~--~~l~~~~~~L~~L~L~~n-~i~~~~~~~l-~-~~l~~~~~L  400 (461)
T 1z7x_W          327 AACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELC--QGLGQPGSVLRVLWLADC-DVSDSSCSSL-A-ATLLANHSL  400 (461)
T ss_dssp             GGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHH--HHHTSTTCCCCEEECTTS-CCCHHHHHHH-H-HHHHHCCCC
T ss_pred             hHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHH--HHHcCCCCceEEEECCCC-CCChhhHHHH-H-HHHHhCCCc
Confidence            10000 0011235688999999884 55543211111  000 12579999999997 5653     3 1 345678999


Q ss_pred             cEEEEcccccchhhhccccccccCCCCcccc-ccccccceeeccCCCC
Q 005744          561 QKVKVTDCTNLKLIVGKESENSAHKNGSISG-VYFRKLHFLKLQHLPQ  607 (679)
Q Consensus       561 ~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~cp~  607 (679)
                      ++|++++|+ +.......-..        .+ ...++|+.|.+.++..
T Consensus       401 ~~L~l~~N~-i~~~~~~~l~~--------~l~~~~~~L~~L~~~~~~~  439 (461)
T 1z7x_W          401 RELDLSNNC-LGDAGILQLVE--------SVRQPGCLLEQLVLYDIYW  439 (461)
T ss_dssp             CEEECCSSS-CCHHHHHHHHH--------HHTSTTCCCCEEECTTCCC
T ss_pred             cEEECCCCC-CCHHHHHHHHH--------HhccCCcchhheeeccccc
Confidence            999999884 43322110000        01 1344677887777643

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.82  E-value=1.7e-21  Score=216.84  Aligned_cols=373  Identities=10%  Similarity=-0.040  Sum_probs=240.9

Q ss_pred             hcCCCeEEEccCCCcccC-Cccc-C-Ccc-eeeeeeccCCcc-cCCCchhhcCCCCccEEEeCCCcCCc-----CCcccc
Q 005744          208 IDEAPTAISIPFRGIYEL-PERL-G-FLK-LKLFLFFTENLS-LQIPDPFFEGMTELRVLDLTGFRFHS-----LPSSLG  277 (679)
Q Consensus       208 ~~~~l~~l~l~~~~~~~l-~~~~-~-~~~-L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~-----lp~~i~  277 (679)
                      ..+++++|+++++.+... +..+ . +++ |++|++++|... ......+...+++|++|++++|.++.     ++..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            567899999998876322 2222 2 444 999999887621 11112233578999999999998653     333456


Q ss_pred             CCcCCCEEEcCCcccCC------cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccc---cccCcccccC
Q 005744          278 CLINLRTLSLENCLVVD------VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKL---KEIRPNVISN  348 (679)
Q Consensus       278 ~l~~L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l---~~lp~~~l~~  348 (679)
                      .+++|++|++++|.+..      +..+.++++|++|++++|.+..+|..+..+++|++|+++.+...   ...+.. ++.
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN-LVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC-CCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH-hhc
Confidence            78899999999998862      34566789999999999998899988999999999999763322   122223 677


Q ss_pred             CCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCC--ccc-cccccceeEEEeCCc----ccCCCC
Q 005744          349 LTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMP--QDL-VFVELERFRICIGDV----WSWSDG  421 (679)
Q Consensus       349 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~-~~~~L~~L~l~~~~~----~~~~~~  421 (679)
                      +++|+.|++.++...        .....+..+++|++|++++|.+....  ..+ .+++|+.|++..+..    ......
T Consensus       269 ~~~L~~L~l~~~~~~--------~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~  340 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPN--------EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY  340 (592)
T ss_dssp             CTTCCEEEETTCCTT--------TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHH
T ss_pred             cccccccCccccchh--------HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHh
Confidence            888999988765321        22344567788999999988743211  112 678899998872211    112345


Q ss_pred             CCCcceEEecC----------CCccee--chhHHHHhhcccccccccccCcccccccccchhhccccceEeeecC---CC
Q 005744          422 YETSKTLKLQL----------NNSTYL--GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNG---PE  486 (679)
Q Consensus       422 ~~~l~~L~L~~----------~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~---~~  486 (679)
                      +++|+.|+++.          +.....  ...+...+++|++|++..+......+..+.  ..+++|++|+++++   +.
T Consensus       341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~--~~~~~L~~L~l~~~~~~n~  418 (592)
T 3ogk_B          341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG--TYLKNLCDFRLVLLDREER  418 (592)
T ss_dssp             CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH--HHCCSCCEEEEEECSCCSC
T ss_pred             CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH--hhCCCCcEEEEeecCCCcc
Confidence            67899999984          333321  122233478999999954443333333331  34899999999854   33


Q ss_pred             eeEEEeC---CCccccccccceeecccccc-ccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcE
Q 005744          487 ILHILNS---DGRVGTFPLLESLFLHNLIN-LEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQK  562 (679)
Q Consensus       487 l~~~~~~---~~~~~~~~~L~~L~l~~c~~-L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~  562 (679)
                      ++..+..   ......+++|++|+++.|.+ +.......+     ...+++|+.|++++|. +++......+..+++|++
T Consensus       419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-----~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~  492 (592)
T 3ogk_B          419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-----GQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQK  492 (592)
T ss_dssp             CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-----HHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCE
T ss_pred             ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-----HHhCccceEeeccCCC-CCHHHHHHHHhcCcccCe
Confidence            3321100   00124689999999987664 322111111     1347899999999864 654322234567899999


Q ss_pred             EEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCccc
Q 005744          563 VKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTS  610 (679)
Q Consensus       563 L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~  610 (679)
                      |+|++|+ +.......           ....+++|++|+|++|+ ++.
T Consensus       493 L~l~~n~-l~~~~~~~-----------~~~~l~~L~~L~ls~n~-it~  527 (592)
T 3ogk_B          493 LEMRGCC-FSERAIAA-----------AVTKLPSLRYLWVQGYR-ASM  527 (592)
T ss_dssp             EEEESCC-CBHHHHHH-----------HHHHCSSCCEEEEESCB-CCT
T ss_pred             eeccCCC-CcHHHHHH-----------HHHhcCccCeeECcCCc-CCH
Confidence            9999997 54321110           23478999999999997 543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.80  E-value=7.9e-20  Score=186.01  Aligned_cols=236  Identities=15%  Similarity=0.147  Sum_probs=173.3

Q ss_pred             hhcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCE
Q 005744          207 KIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRT  284 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~  284 (679)
                      ...+++++|++++|.+..++. .+ .+++|++|++++|.+.+..+   +..+++|++|++++|.++.+|.    .++|++
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~  103 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----GPSIET  103 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccccccC----CCCcCE
Confidence            345689999999999988774 34 89999999999999875443   6899999999999999987763    389999


Q ss_pred             EEcCCcccCC-cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccc-cCCCCCcEEEccCCc
Q 005744          285 LSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVI-SNLTRLEELYMGNSF  361 (679)
Q Consensus       285 L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l-~~l~~L~~L~l~~~~  361 (679)
                      |++++|.+.. +..  .+++|++|++++|.++.++. .++.+++|++|++++ +.++.+++..+ ..+++|++|++++|.
T Consensus       104 L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~  180 (317)
T 3o53_A          104 LHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNF  180 (317)
T ss_dssp             EECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             EECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC-CCCCcccHHHHhhccCcCCEEECCCCc
Confidence            9999999988 432  37889999999999998865 688999999999999 56777655445 478999999999998


Q ss_pred             ccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc-cccccceeEEEeCCcccCCCCCCCcceEEecCCCcceech
Q 005744          362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGY  440 (679)
Q Consensus       362 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~  440 (679)
                      +....         ....+++|+.|++++|.+..++..+ .+++|+.|++.                    ++....+|.
T Consensus       181 l~~~~---------~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~--------------------~N~l~~l~~  231 (317)
T 3o53_A          181 IYDVK---------GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR--------------------NNKLVLIEK  231 (317)
T ss_dssp             CCEEE---------CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT--------------------TSCCCEECT
T ss_pred             Ccccc---------cccccccCCEEECCCCcCCcchhhhcccCcccEEECc--------------------CCcccchhh
Confidence            75432         2335889999999999988777665 55566665554                    333333343


Q ss_pred             hHHHHhhcccccccccccCc-ccccccccchhhccccceEeeecCC
Q 005744          441 GMKMLLKRTEDLHLDELAGF-KNVVHELDDEEGFARLRHLHVHNGP  485 (679)
Q Consensus       441 ~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~  485 (679)
                      .+.. +++|+.|++++|... ..++.++   ..+++|+.|++.++.
T Consensus       232 ~~~~-l~~L~~L~l~~N~~~~~~~~~~~---~~~~~L~~l~l~~~~  273 (317)
T 3o53_A          232 ALRF-SQNLEHFDLRGNGFHCGTLRDFF---SKNQRVQTVAKQTVK  273 (317)
T ss_dssp             TCCC-CTTCCEEECTTCCCBHHHHHHHH---HTCHHHHHHHHHHHH
T ss_pred             Hhhc-CCCCCEEEccCCCccCcCHHHHH---hccccceEEECCCch
Confidence            3322 455555555555543 3333434   445555555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=1.5e-18  Score=173.71  Aligned_cols=193  Identities=21%  Similarity=0.207  Sum_probs=160.4

Q ss_pred             hcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEc
Q 005744          208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL  287 (679)
Q Consensus       208 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L  287 (679)
                      ...+++.++++++.+..+|..+. +++++|++++|.+.+ ++...|..+++|++|++++|.++.+|.. +.+++|++|++
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L   84 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL   84 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred             ccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence            35678999999999999987663 789999999999874 4444568999999999999999988764 78999999999


Q ss_pred             CCcccCC-cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccce
Q 005744          288 ENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK  365 (679)
Q Consensus       288 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~  365 (679)
                      ++|.+.. |..+..+++|++|++++|+++.+|. .+..+++|++|++++ +.++.+|++.+..+++|+.|++++|.+...
T Consensus        85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCcc
Confidence            9999988 8889999999999999999998874 588999999999999 678889888788999999999999987532


Q ss_pred             eccCCcCChhhhhcCCCCceEEeecCCCccCCccc-cccccceeEEE
Q 005744          366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRIC  411 (679)
Q Consensus       366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~  411 (679)
                      .       ...+..+++|+.|++++|.+..+|..+ ...+|+.+.+.
T Consensus       164 ~-------~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~  203 (290)
T 1p9a_G          164 P-------AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH  203 (290)
T ss_dssp             C-------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred             C-------HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence            1       234577899999999999998887765 44455555543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.79  E-value=2.9e-18  Score=170.10  Aligned_cols=191  Identities=23%  Similarity=0.380  Sum_probs=150.2

Q ss_pred             CCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCcc-ccCCcCCCEEEcC
Q 005744          210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLE  288 (679)
Q Consensus       210 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~L~  288 (679)
                      ...+.++++++.+..+|..+. ++++.|++++|.+. .++...|.++++|++|++++|.++.+|.. +.++++|++|+++
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            356788999998888887553 67899999998876 56655568899999999999999888765 4789999999999


Q ss_pred             CcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccce
Q 005744          289 NCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK  365 (679)
Q Consensus       289 ~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~  365 (679)
                      +|.+..  +..+.++++|++|++++|.++.+|.. ++.+++|++|++++ +.++.+|+..++.+++|++|++++|.+...
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            998888  45678899999999999988877754 68899999999998 578888887788899999999998876532


Q ss_pred             eccCCcCChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEE
Q 005744          366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRI  410 (679)
Q Consensus       366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l  410 (679)
                             ....+..+++|+.|++++|.+..++...  .+++|+.|++
T Consensus       173 -------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  212 (270)
T 2o6q_A          173 -------PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL  212 (270)
T ss_dssp             -------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             -------ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence                   1234677888999999988887776543  3444544444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.79  E-value=7e-19  Score=175.39  Aligned_cols=203  Identities=21%  Similarity=0.304  Sum_probs=139.1

Q ss_pred             ccchhhhhhhhcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-c
Q 005744          198 VADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-S  274 (679)
Q Consensus       198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~  274 (679)
                      +..+..+|...+.++++|++++|.+..++. .+ .+++|++|++++|.+. .++...|.++++|++|++++|.++.++ .
T Consensus        16 ~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (276)
T 2z62_A           16 ELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALG   94 (276)
T ss_dssp             TSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             CCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChh
Confidence            344455555556678888888888877665 33 6788888888888766 444444577888888888888877664 5


Q ss_pred             cccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCc--cchhhhcCCCCCEEcccCCccccccCcccccCCC
Q 005744          275 SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLT  350 (679)
Q Consensus       275 ~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~  350 (679)
                      .+.++++|++|++++|.+..  +..++++++|++|++++|.++.  +|..++++++|++|++++ +.++.+++..+..++
T Consensus        95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~  173 (276)
T 2z62_A           95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLH  173 (276)
T ss_dssp             TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHH
T ss_pred             hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-CCCCcCCHHHhhhhh
Confidence            67788888888888887777  3467788888888888887775  677788888888888887 566666665566666


Q ss_pred             CCc----EEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEE
Q 005744          351 RLE----ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRI  410 (679)
Q Consensus       351 ~L~----~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l  410 (679)
                      +|+    .|++++|.+.....        ......+|+.|++++|.+..++..+  .+++|+.|++
T Consensus       174 ~L~~l~l~L~ls~n~l~~~~~--------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  231 (276)
T 2z62_A          174 QMPLLNLSLDLSLNPMNFIQP--------GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL  231 (276)
T ss_dssp             TCTTCCEEEECCSSCCCEECT--------TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred             hccccceeeecCCCcccccCc--------cccCCCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence            666    77777776653221        1122336778888877777666543  3444444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.79  E-value=2.7e-18  Score=170.40  Aligned_cols=189  Identities=24%  Similarity=0.382  Sum_probs=162.8

Q ss_pred             cccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc
Q 005744          197 NVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS  274 (679)
Q Consensus       197 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~  274 (679)
                      .+..++.+|...+.++++|++++|.+..++.. + .+++|++|++++|.+. .+|..+|..+++|++|++++|.++.+|.
T Consensus        24 ~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~  102 (270)
T 2o6q_A           24 SSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPI  102 (270)
T ss_dssp             TTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCT
T ss_pred             cCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCH
Confidence            34556666766678899999999999888863 4 8999999999999887 7888888999999999999999998864


Q ss_pred             -cccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCC
Q 005744          275 -SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLT  350 (679)
Q Consensus       275 -~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~  350 (679)
                       .+..+++|++|++++|.+..  +..++.+++|++|++++|.++.+|.. +..+++|++|++++ +.++.+++..+.+++
T Consensus       103 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~  181 (270)
T 2o6q_A          103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLT  181 (270)
T ss_dssp             TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCT
T ss_pred             hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCC
Confidence             56899999999999999988  46689999999999999999999876 78999999999999 678889887789999


Q ss_pred             CCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCc
Q 005744          351 RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ  394 (679)
Q Consensus       351 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  394 (679)
                      +|++|++++|.+....       ...+..+++|+.|++++|.+.
T Consensus       182 ~L~~L~L~~N~l~~~~-------~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          182 ELKTLKLDNNQLKRVP-------EGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TCCEEECCSSCCSCCC-------TTTTTTCTTCCEEECCSSCBC
T ss_pred             CcCEEECCCCcCCcCC-------HHHhccccCCCEEEecCCCee
Confidence            9999999999775321       234677899999999998754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.79  E-value=1.2e-20  Score=210.19  Aligned_cols=370  Identities=13%  Similarity=0.050  Sum_probs=226.3

Q ss_pred             hhcCCCeEEEccCCCccc-CCccc--CCcceeeeeeccCC-cccCCCchhhcCCCCccEEEeCCCcCCc-----CCcccc
Q 005744          207 KIDEAPTAISIPFRGIYE-LPERL--GFLKLKLFLFFTEN-LSLQIPDPFFEGMTELRVLDLTGFRFHS-----LPSSLG  277 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~-l~~~~--~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----lp~~i~  277 (679)
                      ...+++++|+++++.+.. .+..+  .+++|++|++.+|. +.......++.++++|++|++++|.++.     ++....
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            346789999999987733 22222  58899999999884 3322233445689999999999998653     333344


Q ss_pred             CCcCCCEEEcCCcc--cCC---cccccCCCCCcEEEecCC-CCCccchhhhcCCCCCEEcccCCcc------ccccCccc
Q 005744          278 CLINLRTLSLENCL--VVD---VAIIGDLKKLEILSLKHS-SIEQLPREIGQLTCLKLLDLSNCSK------LKEIRPNV  345 (679)
Q Consensus       278 ~l~~L~~L~L~~~~--~~~---~~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~------l~~lp~~~  345 (679)
                      .+++|++|++++|.  +..   ...+.++++|++|++++| .+..+|..+.++++|++|++..|..      +..++.. 
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~-  260 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA-  260 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH-
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH-
Confidence            77899999999987  221   122355799999999998 6667888889999999998766432      3334443 


Q ss_pred             ccCCCCCcEEE-ccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccC--Cccc-cccccceeEEEeCCccc----
Q 005744          346 ISNLTRLEELY-MGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVM--PQDL-VFVELERFRICIGDVWS----  417 (679)
Q Consensus       346 l~~l~~L~~L~-l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~-~~~~L~~L~l~~~~~~~----  417 (679)
                      ++++++|+.|. +.+...        ......+..+++|+.|+++++.+...  ...+ .+++|+.|++..+....    
T Consensus       261 l~~~~~L~~Ls~~~~~~~--------~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~  332 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVP--------AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV  332 (594)
T ss_dssp             HHTCTTCCEEECCBTCCG--------GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH
T ss_pred             HhcCCCcccccCCcccch--------hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHH
Confidence            67777788773 222111        01122234567788888877764321  1111 56778888876552111    


Q ss_pred             CCCCCCCcceEEecC--------CCccee--chhHHHHhhcccccccccccCcccccccccchhhccccceEeee-----
Q 005744          418 WSDGYETSKTLKLQL--------NNSTYL--GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVH-----  482 (679)
Q Consensus       418 ~~~~~~~l~~L~L~~--------~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~-----  482 (679)
                      ....+++|+.|++..        +.....  ...+...+++|+.|.+..+......+..+.  ..+++|++|+++     
T Consensus       333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~--~~~~~L~~L~L~~~~~~  410 (594)
T 2p1m_B          333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA--RNRPNMTRFRLCIIEPK  410 (594)
T ss_dssp             HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH--HHCTTCCEEEEEESSTT
T ss_pred             HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH--hhCCCcceeEeecccCC
Confidence            122367788888743        111111  112223367899996544433222222221  358899999998     


Q ss_pred             cCCCeeEEEeC---CCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhc
Q 005744          483 NGPEILHILNS---DGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQ  559 (679)
Q Consensus       483 ~~~~l~~~~~~---~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~  559 (679)
                      +|..+...+..   ......+++|++|++++  ++.......+.     ..+++|+.|++++|. +++.........+++
T Consensus       411 ~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~-----~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~  482 (594)
T 2p1m_B          411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIG-----TYAKKMEMLSVAFAG-DSDLGMHHVLSGCDS  482 (594)
T ss_dssp             CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHH-----HHCTTCCEEEEESCC-SSHHHHHHHHHHCTT
T ss_pred             CcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHH-----HhchhccEeeccCCC-CcHHHHHHHHhcCCC
Confidence            44544321100   00124678999999966  44432111111     237899999999875 554422233467899


Q ss_pred             CcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCC
Q 005744          560 LQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQ  607 (679)
Q Consensus       560 L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~  607 (679)
                      |++|++++|+. .......           ....+++|++|++++|+.
T Consensus       483 L~~L~L~~n~~-~~~~~~~-----------~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          483 LRKLEIRDCPF-GDKALLA-----------NASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CCEEEEESCSC-CHHHHHH-----------TGGGGGGSSEEEEESSCC
T ss_pred             cCEEECcCCCC-cHHHHHH-----------HHHhCCCCCEEeeeCCCC
Confidence            99999999975 3222110           234689999999999975

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.78  E-value=2.9e-20  Score=188.73  Aligned_cols=180  Identities=17%  Similarity=0.171  Sum_probs=98.6

Q ss_pred             CCCeEEEccCCCcccCCcccCCcceeeeeeccCCcc-cCCCchhh------cCCCCccEEEeCCCcCC-cCCccc--cCC
Q 005744          210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLS-LQIPDPFF------EGMTELRVLDLTGFRFH-SLPSSL--GCL  279 (679)
Q Consensus       210 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~-~~~~~~~~------~~l~~L~~L~l~~~~l~-~lp~~i--~~l  279 (679)
                      .+++.+++++|.+ .+|..+. ..|++|++++|.+. ..+|..+.      .++++|++|++++|.++ .+|..+  ..+
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  120 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG  120 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred             CCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence            3455566666666 5555431 11666666666652 23444331      14666666666666665 456554  666


Q ss_pred             cCCCEEEcCCcccCC-cccccCC-----CCCcEEEecCCCCCccc-hhhhcCCCCCEEcccCCccccc--cCcc-cccCC
Q 005744          280 INLRTLSLENCLVVD-VAIIGDL-----KKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKE--IRPN-VISNL  349 (679)
Q Consensus       280 ~~L~~L~L~~~~~~~-~~~i~~L-----~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~--lp~~-~l~~l  349 (679)
                      ++|++|++++|.+.. |..++.+     ++|++|++++|.++.+| ..++++++|++|++++|...+.  ++.. .++.+
T Consensus       121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence            666666666666665 5555555     66666666666666555 4566666666666666432222  1222 12566


Q ss_pred             CCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCcc
Q 005744          350 TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV  395 (679)
Q Consensus       350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  395 (679)
                      ++|++|++++|.+.....    ....-+..+++|+.|++++|.+..
T Consensus       201 ~~L~~L~L~~N~l~~~~~----~~~~~~~~l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSG----VCSALAAARVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             TTCCEEECTTSCCCCHHH----HHHHHHHTTCCCSEEECTTSCCCS
T ss_pred             CCCCEEECCCCcCcchHH----HHHHHHhcCCCCCEEECCCCcCCc
Confidence            666666666665531000    001122355666666666665544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=4e-18  Score=172.42  Aligned_cols=192  Identities=17%  Similarity=0.259  Sum_probs=163.9

Q ss_pred             hhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEE
Q 005744          207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS  286 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  286 (679)
                      ...+++++|+++++.+..++....+++|++|++++|.+. .++.  +..+++|++|++++|.++.+| .+..+++|++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred             HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence            346789999999999988886558999999999999887 4555  689999999999999999886 689999999999


Q ss_pred             cCCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccccee
Q 005744          287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV  366 (679)
Q Consensus       287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~  366 (679)
                      +++|.+...+.++.+++|++|++++|.++.+|. ++.+++|++|++++ +.++.+++  ++.+++|++|++++|.+..  
T Consensus       114 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~--  187 (308)
T 1h6u_A          114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGN-AQVSDLTP--LANLSKLTTLKADDNKISD--  187 (308)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCC--
T ss_pred             CCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccC-CcCCCChh--hcCCCCCCEEECCCCccCc--
Confidence            999999885569999999999999999999886 89999999999999 57788776  8899999999999997742  


Q ss_pred             ccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCc
Q 005744          367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDV  415 (679)
Q Consensus       367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  415 (679)
                             +..+..+++|+.|++++|.+..++....+++|+.|++..+.+
T Consensus       188 -------~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          188 -------ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             -------CGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred             -------ChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence                   234788999999999999988777533677777777765553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=2.6e-19  Score=192.90  Aligned_cols=237  Identities=17%  Similarity=0.128  Sum_probs=149.6

Q ss_pred             CcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEe
Q 005744          231 FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSL  309 (679)
Q Consensus       231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l  309 (679)
                      +++|++|++++|.+.+ +++..|..+++|++|++++|.++.+++ ++.+++|++|++++|.+.. +.    .++|++|++
T Consensus        33 ~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred             CCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence            4467777777777664 443344777777777777777765544 7777777777777777665 32    267777777


Q ss_pred             cCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhh-cCCCCceEEe
Q 005744          310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELK-QLSRLTTLEV  388 (679)
Q Consensus       310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l  388 (679)
                      ++|.++.+|.  ..+++|++|++++ +.++.+++..++.+++|++|++++|.+....       +..+. .+++|+.|++
T Consensus       107 ~~N~l~~~~~--~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~l~~~l~~L~~L~L  176 (487)
T 3oja_A          107 ANNNISRVSC--SRGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-------FAELAASSDTLEHLNL  176 (487)
T ss_dssp             CSSCCCCEEE--CCCSSCEEEECCS-SCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-------GGGGGGGTTTCCEEEC
T ss_pred             cCCcCCCCCc--cccCCCCEEECCC-CCCCCCCchhhcCCCCCCEEECCCCCCCCcC-------hHHHhhhCCcccEEec
Confidence            7777776654  3456777777777 4556655544677777777777777665322       22333 5677777777


Q ss_pred             ecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCccccccccc
Q 005744          389 HIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELD  468 (679)
Q Consensus       389 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  468 (679)
                      ++|.+..++...                    .+++|+.|+|+++....+|..+.. +++|+.|++++|.. ..+|..+ 
T Consensus       177 s~N~l~~~~~~~--------------------~l~~L~~L~Ls~N~l~~~~~~~~~-l~~L~~L~Ls~N~l-~~lp~~l-  233 (487)
T 3oja_A          177 QYNFIYDVKGQV--------------------VFAKLKTLDLSSNKLAFMGPEFQS-AAGVTWISLRNNKL-VLIEKAL-  233 (487)
T ss_dssp             TTSCCCEEECCC--------------------CCTTCCEEECCSSCCCEECGGGGG-GTTCSEEECTTSCC-CEECTTC-
T ss_pred             CCCccccccccc--------------------cCCCCCEEECCCCCCCCCCHhHcC-CCCccEEEecCCcC-cccchhh-
Confidence            777665443322                    244555555666655556555544 67888888888764 4566666 


Q ss_pred             chhhccccceEeeecCCCe-eEEEeCCCccccccccceeecccc
Q 005744          469 DEEGFARLRHLHVHNGPEI-LHILNSDGRVGTFPLLESLFLHNL  511 (679)
Q Consensus       469 ~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~L~~L~l~~c  511 (679)
                        ..+++|+.|++++|+.. ..+   ......++.|+.+.+..+
T Consensus       234 --~~l~~L~~L~l~~N~l~c~~~---~~~~~~l~~L~~l~~~~~  272 (487)
T 3oja_A          234 --RFSQNLEHFDLRGNGFHCGTL---RDFFSKNQRVQTVAKQTV  272 (487)
T ss_dssp             --CCCTTCCEEECTTCCBCHHHH---HHHHTTCHHHHHHHHHHH
T ss_pred             --ccCCCCCEEEcCCCCCcCcch---HHHHHhCCCCcEEecccc
Confidence              66788888888887632 111   112345677777777543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.77  E-value=5.5e-18  Score=168.87  Aligned_cols=176  Identities=23%  Similarity=0.312  Sum_probs=124.7

Q ss_pred             EEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCccc
Q 005744          214 AISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLV  292 (679)
Q Consensus       214 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~  292 (679)
                      .++-.+..+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.++.++ ..+.++++|++|++++|.+
T Consensus        11 ~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EEECTTSCCSSCCSSSC-TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             eEEecCCCccccCCCCC-CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            34555566667776442 56888888888876 444444578888888888888888765 4678888888888888888


Q ss_pred             CC--cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccc--cCcccccCCCCCcEEEccCCcccceec
Q 005744          293 VD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWKVE  367 (679)
Q Consensus       293 ~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (679)
                      ..  +..+.++++|++|++++|.++.++. .++++++|++|++++ +.++.  +|.. ++++++|++|++++|.+.....
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC-CccceecCchh-hccCCCCCEEECCCCCCCcCCH
Confidence            77  4678888888888888888887765 578888888888888 45555  3443 7888888888888887653221


Q ss_pred             cCCcCChhhhhcCCCCc-eEEeecCCCccCC
Q 005744          368 GQSNASLGELKQLSRLT-TLEVHIPDAQVMP  397 (679)
Q Consensus       368 ~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~  397 (679)
                          ..+..+.+++.|. .|++++|.+..++
T Consensus       167 ----~~~~~l~~L~~l~l~L~ls~n~l~~~~  193 (276)
T 2z62_A          167 ----TDLRVLHQMPLLNLSLDLSLNPMNFIQ  193 (276)
T ss_dssp             ----GGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred             ----HHhhhhhhccccceeeecCCCcccccC
Confidence                2344455555554 6777776665443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.77  E-value=1.4e-18  Score=172.56  Aligned_cols=175  Identities=24%  Similarity=0.294  Sum_probs=110.5

Q ss_pred             hhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc-cccCCcCCCEE
Q 005744          207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTL  285 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L  285 (679)
                      ....+++.++++++.+..++....+++|++|++++|.+.+ ++  .+..+++|++|++++|.++.+|. .++++++|++|
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            3456677777777777666654467777777777776653 32  24667777777777777766643 35667777777


Q ss_pred             EcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcc
Q 005744          286 SLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT  362 (679)
Q Consensus       286 ~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~  362 (679)
                      ++++|.+..  +..++++++|++|++++|.++.+|.. ++.+++|++|++++ +.++.+++..++.+++|++|++++|.+
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC-CCcCccCHHHhcCCccCCEEECCCCcC
Confidence            777777666  33466677777777777777666554 46677777777776 456666665556667777777776655


Q ss_pred             cceeccCCcCChhhhhcCCCCceEEeecCC
Q 005744          363 QWKVEGQSNASLGELKQLSRLTTLEVHIPD  392 (679)
Q Consensus       363 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  392 (679)
                      ...       ....+..+++|+.|++++|.
T Consensus       194 ~~~-------~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          194 KSV-------PDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             SCC-------CTTTTTTCTTCCEEECCSSC
T ss_pred             Ccc-------CHHHHhCCcCCCEEEccCCC
Confidence            421       11234555666666665553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=1e-18  Score=188.22  Aligned_cols=187  Identities=17%  Similarity=0.179  Sum_probs=151.8

Q ss_pred             hcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEE
Q 005744          208 IDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTL  285 (679)
Q Consensus       208 ~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L  285 (679)
                      .+++++.|++++|.+..++. .+ .+++|++|++++|.+.+..|   +..+++|++|++++|.++.+|..    ++|++|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVG----PSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEEC----TTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCC----CCcCEE
Confidence            34589999999999988764 44 89999999999999875544   68999999999999999987643    899999


Q ss_pred             EcCCcccCC-cccccCCCCCcEEEecCCCCCcc-chhhhcCCCCCEEcccCCccccccCccccc-CCCCCcEEEccCCcc
Q 005744          286 SLENCLVVD-VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVIS-NLTRLEELYMGNSFT  362 (679)
Q Consensus       286 ~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~-~l~~L~~L~l~~~~~  362 (679)
                      ++++|.+.. +.  ..+++|++|++++|.++.+ |..++.+++|++|++++ +.++.+++..+. .+++|++|++++|.+
T Consensus       105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             ECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC-CCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            999999988 43  2468999999999999977 45789999999999999 566665444465 799999999999987


Q ss_pred             cceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc-cccccceeEEEeC
Q 005744          363 QWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIG  413 (679)
Q Consensus       363 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~  413 (679)
                      ....         ....+++|+.|++++|.+..++..+ .+++|+.|++..+
T Consensus       182 ~~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          182 YDVK---------GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN  224 (487)
T ss_dssp             CEEE---------CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS
T ss_pred             cccc---------ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC
Confidence            6432         2346889999999999998877665 5566666665443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.76  E-value=2.6e-19  Score=181.73  Aligned_cols=219  Identities=16%  Similarity=0.208  Sum_probs=158.3

Q ss_pred             CCeEEEccCCCccc--CCccc--------CCcceeeeeeccCCcccCCCchhh-cCCCCccEEEeCCCcCCcCCccccCC
Q 005744          211 APTAISIPFRGIYE--LPERL--------GFLKLKLFLFFTENLSLQIPDPFF-EGMTELRVLDLTGFRFHSLPSSLGCL  279 (679)
Q Consensus       211 ~l~~l~l~~~~~~~--l~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~lp~~i~~l  279 (679)
                      .++++++++|.+..  ++...        .+++|++|++++|.+.+.+|..+| ..+++|++|++++|.++.+|..++.+
T Consensus        64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l  143 (312)
T 1wwl_A           64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL  143 (312)
T ss_dssp             HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHH
T ss_pred             HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHH
Confidence            37777888877743  44433        488899999999988878887764 78899999999999988888777777


Q ss_pred             -----cCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCc---cchhh--hcCCCCCEEcccCCccccc---cCcc
Q 005744          280 -----INLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQ---LPREI--GQLTCLKLLDLSNCSKLKE---IRPN  344 (679)
Q Consensus       280 -----~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~---lp~~i--~~L~~L~~L~l~~~~~l~~---lp~~  344 (679)
                           ++|++|++++|.+..  +..++++++|++|++++|++..   +|..+  +.+++|++|++++ +.++.   ++..
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~  222 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN-AGMETPSGVCSA  222 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTT-SCCCCHHHHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCC-CcCcchHHHHHH
Confidence                 889999999998888  4788899999999999998663   35555  7889999999988 45663   3334


Q ss_pred             cccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCC
Q 005744          345 VISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYET  424 (679)
Q Consensus       345 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  424 (679)
                      .+..+++|++|++++|.+....+      ...+..+++|+.|++++|.+..+|..+. ++|+.|+               
T Consensus       223 ~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~---------------  280 (312)
T 1wwl_A          223 LAAARVQLQGLDLSHNSLRDAAG------APSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLD---------------  280 (312)
T ss_dssp             HHHTTCCCSEEECTTSCCCSSCC------CSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEE---------------
T ss_pred             HHhcCCCCCEEECCCCcCCcccc------hhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEE---------------
Confidence            34677899999999887753221      1234557889999999888887776543 4444444               


Q ss_pred             cceEEecCCCcceechhHHHHhhcccccccccccC
Q 005744          425 SKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAG  459 (679)
Q Consensus       425 l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  459 (679)
                           ++++.....|. +. .+++|+.|++++|..
T Consensus       281 -----Ls~N~l~~~p~-~~-~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          281 -----LSYNRLDRNPS-PD-ELPQVGNLSLKGNPF  308 (312)
T ss_dssp             -----CCSSCCCSCCC-TT-TSCEEEEEECTTCTT
T ss_pred             -----CCCCCCCCChh-Hh-hCCCCCEEeccCCCC
Confidence                 44444433433 22 257777777777653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.76  E-value=2.1e-18  Score=174.51  Aligned_cols=204  Identities=19%  Similarity=0.224  Sum_probs=160.2

Q ss_pred             ccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCCcc
Q 005744          217 IPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVA  296 (679)
Q Consensus       217 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~  296 (679)
                      +..+.+..+.....+++|++|+++++.+. .++.  +..+++|++|++++|.++.++. +..+++|++|++++|.+..++
T Consensus        26 l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~  101 (308)
T 1h6u_A           26 AGKSNVTDTVTQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS  101 (308)
T ss_dssp             TTCSSTTSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG
T ss_pred             hCCCCcCceecHHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch
Confidence            33444444333336889999999999876 4653  5889999999999999999887 999999999999999998877


Q ss_pred             cccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhh
Q 005744          297 IIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGE  376 (679)
Q Consensus       297 ~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  376 (679)
                      .++.+++|++|++++|.++.+|. +..+++|++|++++ +.++.+++  ++.+++|++|++++|.+..         +..
T Consensus       102 ~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~---------~~~  168 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL-NQITNISP--LAGLTNLQYLSIGNAQVSD---------LTP  168 (308)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCTTCCEEECCSSCCCC---------CGG
T ss_pred             hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCC-CccCcCcc--ccCCCCccEEEccCCcCCC---------Chh
Confidence            89999999999999999999886 99999999999999 57788876  8899999999999997742         233


Q ss_pred             hhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhccccccccc
Q 005744          377 LKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDE  456 (679)
Q Consensus       377 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~  456 (679)
                      +..+++|+.|++++|.+..++....+++                    |+.|+++++.....+. +. .+++|+.|++++
T Consensus       169 l~~l~~L~~L~l~~n~l~~~~~l~~l~~--------------------L~~L~L~~N~l~~~~~-l~-~l~~L~~L~l~~  226 (308)
T 1h6u_A          169 LANLSKLTTLKADDNKISDISPLASLPN--------------------LIEVHLKNNQISDVSP-LA-NTSNLFIVTLTN  226 (308)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGGGCTT--------------------CCEEECTTSCCCBCGG-GT-TCTTCCEEEEEE
T ss_pred             hcCCCCCCEEECCCCccCcChhhcCCCC--------------------CCEEEccCCccCcccc-cc-CCCCCCEEEccC
Confidence            8889999999999998877655224444                    4555555554444442 32 267788888887


Q ss_pred             ccC
Q 005744          457 LAG  459 (679)
Q Consensus       457 ~~~  459 (679)
                      |..
T Consensus       227 N~i  229 (308)
T 1h6u_A          227 QTI  229 (308)
T ss_dssp             EEE
T ss_pred             Cee
Confidence            764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.75  E-value=4e-18  Score=165.90  Aligned_cols=199  Identities=12%  Similarity=0.174  Sum_probs=157.6

Q ss_pred             hhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCC-CcCCcCC-ccc
Q 005744          201 LKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTG-FRFHSLP-SSL  276 (679)
Q Consensus       201 ~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~lp-~~i  276 (679)
                      ++.+|. .+.+++.|++++|.+..++.. + .+++|++|++++|.....++...|.++++|++|++++ |.++.+| ..+
T Consensus        23 l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           23 IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            555665 667899999999999888773 3 7899999999999733367766678999999999998 8898886 568


Q ss_pred             cCCcCCCEEEcCCcccCCcccccCCCCCc---EEEecCC-CCCccchh-hhcCCCCC-EEcccCCccccccCcccccCCC
Q 005744          277 GCLINLRTLSLENCLVVDVAIIGDLKKLE---ILSLKHS-SIEQLPRE-IGQLTCLK-LLDLSNCSKLKEIRPNVISNLT  350 (679)
Q Consensus       277 ~~l~~L~~L~L~~~~~~~~~~i~~L~~L~---~L~l~~~-~l~~lp~~-i~~L~~L~-~L~l~~~~~l~~lp~~~l~~l~  350 (679)
                      .++++|++|++++|.+...+.++.+.+|+   +|++++| .++.+|.. +..+++|+ +|++++ +.++.+|...+.. +
T Consensus       102 ~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~-~  179 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNG-T  179 (239)
T ss_dssp             ECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTT-C
T ss_pred             CCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCC-C
Confidence            88999999999999988833388888888   9999999 99988865 78899999 999988 6777888875555 8


Q ss_pred             CCcEEEccCCc-ccceeccCCcCChhhhhcC-CCCceEEeecCCCccCCccccccccceeEE
Q 005744          351 RLEELYMGNSF-TQWKVEGQSNASLGELKQL-SRLTTLEVHIPDAQVMPQDLVFVELERFRI  410 (679)
Q Consensus       351 ~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  410 (679)
                      +|++|++++|. +....       ...+..+ ++|+.|++++|.+..+|.. .+.+|+.|.+
T Consensus       180 ~L~~L~L~~n~~l~~i~-------~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l  233 (239)
T 2xwt_C          180 KLDAVYLNKNKYLTVID-------KDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA  233 (239)
T ss_dssp             EEEEEECTTCTTCCEEC-------TTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred             CCCEEEcCCCCCcccCC-------HHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence            89999999984 64221       2345667 8899999999988877765 5666766665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.75  E-value=1.1e-17  Score=167.41  Aligned_cols=186  Identities=18%  Similarity=0.192  Sum_probs=160.2

Q ss_pred             cccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc
Q 005744          197 NVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS  274 (679)
Q Consensus       197 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~  274 (679)
                      .+..++.+|...+++++.|++++|.+..++.. + .+++|++|++++|.+.+ ++.  ...+++|++|++++|.++.+|.
T Consensus        18 ~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~Ls~N~l~~l~~   94 (290)
T 1p9a_G           18 DKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV--DGTLPVLGTLDLSHNQLQSLPL   94 (290)
T ss_dssp             TTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC--CSCCTTCCEEECCSSCCSSCCC
T ss_pred             CCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC--CCCCCcCCEEECCCCcCCcCch
Confidence            34556667766678999999999999877543 3 89999999999999874 443  2789999999999999999999


Q ss_pred             cccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCC
Q 005744          275 SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTR  351 (679)
Q Consensus       275 ~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~  351 (679)
                      .+..+++|++|++++|.+..  +..|.++++|++|++++|+++.+|.. +..+++|++|++++ +.++.+|++.+.++++
T Consensus        95 ~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~  173 (290)
T 1p9a_G           95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLEN  173 (290)
T ss_dssp             CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTT
T ss_pred             hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCC
Confidence            99999999999999999998  46799999999999999999998876 57899999999999 6889999987889999


Q ss_pred             CcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCc
Q 005744          352 LEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ  394 (679)
Q Consensus       352 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  394 (679)
                      |++|++++|.+.        .....+....+|+.+++++|...
T Consensus       174 L~~L~L~~N~l~--------~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          174 LDTLLLQENSLY--------TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCEEECCSSCCC--------CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCEEECCCCcCC--------ccChhhcccccCCeEEeCCCCcc
Confidence            999999999876        23345566779999999998764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.75  E-value=3.3e-18  Score=207.31  Aligned_cols=171  Identities=17%  Similarity=0.230  Sum_probs=141.2

Q ss_pred             CCCCCceeccC-CCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHhhccCC
Q 005744            4 YEYSEDFLDWL-LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNP   82 (679)
Q Consensus         4 ~~~~~~~~~~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~W~~~~~~l~~~~~   82 (679)
                      ++..++|++++ |+++|||+||.+.++..  .+++++++++|+++|+|+||||+++|++|+.+. ..|+..++.+.....
T Consensus       274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~  350 (1249)
T 3sfz_A          274 MGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQF  350 (1249)
T ss_dssp             CSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCC
T ss_pred             cCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhh
Confidence            56678999996 99999999999999632  345567899999999999999999999999765 579999999977654


Q ss_pred             Ccccc-----cccccceeeeccccCChhhHHHHHHhccccCCCCcccHHhHHHHHhhcccccccchHHHHHHHHHHHHHH
Q 005744           83 RKIQG-----MDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDN  157 (679)
Q Consensus        83 ~~~~~-----~~~~~~~l~~SY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~~~  157 (679)
                      ..+..     .+....++.+||+.||.+ .|.||+|||+||+++.|+++.++.+|.+++            +.+.+++++
T Consensus       351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~  417 (1249)
T 3sfz_A          351 KRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDILQE  417 (1249)
T ss_dssp             CCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHHHH
T ss_pred             hhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHHHHH
Confidence            33221     122378999999999998 899999999999999999999999997753            244567899


Q ss_pred             HHhccccccCC--CCCceEehhhHHHHHHHHHhcc
Q 005744          158 LKSASLLFDGD--SEDHAKMHRIIHAIAVSIAAEK  190 (679)
Q Consensus       158 L~~~~~~~~~~--~~~~~~mhdli~~l~~~~~~~e  190 (679)
                      |+++++++...  +..+|+||+++|++++..+.++
T Consensus       418 L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          418 FVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             HHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             HHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            99999998543  2336999999999999887665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.74  E-value=3.3e-17  Score=160.59  Aligned_cols=176  Identities=23%  Similarity=0.341  Sum_probs=145.9

Q ss_pred             CCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcC
Q 005744          210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLE  288 (679)
Q Consensus       210 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~  288 (679)
                      ...++++++++.+..+|..+. ++++.|++++|.+.+ ++...|.++++|++|++++|.++.++ ..+..+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            346788999999998887664 689999999999874 44445689999999999999998774 458899999999999


Q ss_pred             CcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccce
Q 005744          289 NCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK  365 (679)
Q Consensus       289 ~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~  365 (679)
                      +|.+..  +..++.+++|++|++++|.++.+|.. +..+++|++|++++ +.++.+|+..++.+++|++|++++|.+...
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            999988  46788999999999999999988876 58899999999999 688888887788999999999999977532


Q ss_pred             eccCCcCChhhhhcCCCCceEEeecCCCcc
Q 005744          366 VEGQSNASLGELKQLSRLTTLEVHIPDAQV  395 (679)
Q Consensus       366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  395 (679)
                             ....+..+++|+.|++++|.+..
T Consensus       171 -------~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          171 -------PHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             -------CTTTTTTCTTCCEEECCSCCBCT
T ss_pred             -------CHHHHhCCCCCCEEEeeCCceeC
Confidence                   22356778899999999887653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.73  E-value=1.1e-17  Score=162.82  Aligned_cols=165  Identities=15%  Similarity=0.221  Sum_probs=126.3

Q ss_pred             CcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCc-CCcCCc-cccCCcCCCEEEcCC-cccCC--c
Q 005744          221 GIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR-FHSLPS-SLGCLINLRTLSLEN-CLVVD--V  295 (679)
Q Consensus       221 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~lp~-~i~~l~~L~~L~L~~-~~~~~--~  295 (679)
                      .+..+|.  -.+++++|++++|.+. .+|...|.++++|++|++++|. ++.+|. .+.++++|++|++++ |.+..  +
T Consensus        22 ~l~~ip~--~~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           22 DIQRIPS--LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             SCSSCCC--CCTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             CccccCC--CCCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            3677777  3448999999998877 5666566889999999999996 888764 688899999999998 78877  4


Q ss_pred             ccccCCCCCcEEEecCCCCCccchhhhcCCCCC---EEcccCCccccccCcccccCCCCCc-EEEccCCcccceeccCCc
Q 005744          296 AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLK---LLDLSNCSKLKEIRPNVISNLTRLE-ELYMGNSFTQWKVEGQSN  371 (679)
Q Consensus       296 ~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~---~L~l~~~~~l~~lp~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~  371 (679)
                      ..+.++++|++|++++|.++.+|. +..+++|+   +|++++|..++.+|+..+..+++|+ +|++++|.+.. .+.   
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~---  173 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQG---  173 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECT---
T ss_pred             HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCH---
Confidence            578889999999999998888887 88888888   9999985488888887788888999 99988887652 211   


Q ss_pred             CChhhhhcCCCCceEEeecCC-CccCC
Q 005744          372 ASLGELKQLSRLTTLEVHIPD-AQVMP  397 (679)
Q Consensus       372 ~~~~~l~~l~~L~~L~l~~~~-~~~~~  397 (679)
                         ..+.. ++|+.|++++|. +..++
T Consensus       174 ---~~~~~-~~L~~L~L~~n~~l~~i~  196 (239)
T 2xwt_C          174 ---YAFNG-TKLDAVYLNKNKYLTVID  196 (239)
T ss_dssp             ---TTTTT-CEEEEEECTTCTTCCEEC
T ss_pred             ---hhcCC-CCCCEEEcCCCCCcccCC
Confidence               11222 567777777763 55443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.73  E-value=1.1e-16  Score=158.98  Aligned_cols=188  Identities=19%  Similarity=0.303  Sum_probs=126.9

Q ss_pred             EEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC
Q 005744          215 ISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD  294 (679)
Q Consensus       215 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~  294 (679)
                      +.+..+.+..+.....+++|+.|++.++.+. .++.  +..+++|++|++++|.++.++ .+..+++|++|++++|.+..
T Consensus        24 l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~   99 (272)
T 3rfs_A           24 ANLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQS   99 (272)
T ss_dssp             HHHTCSCTTSEECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCC
T ss_pred             HHhcCcccccccccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCc
Confidence            3444444433333336777777777777654 3433  467777888888877777654 57777778888888777776


Q ss_pred             --cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCc
Q 005744          295 --VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSN  371 (679)
Q Consensus       295 --~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  371 (679)
                        +..++++++|++|++++|.++.+|.. ++.+++|++|++++ +.++.+++..++.+++|++|++++|.+...      
T Consensus       100 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------  172 (272)
T 3rfs_A          100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTELDLSYNQLQSL------  172 (272)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCC------
T ss_pred             cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC-CccCccCHHHhccCccCCEEECCCCCcCcc------
Confidence              34467777888888887777776654 57777788888877 466777766567777788888777765421      


Q ss_pred             CChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEEEeCC
Q 005744          372 ASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGD  414 (679)
Q Consensus       372 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~  414 (679)
                       ....+..+++|+.|++++|.+..++...  .+++|+.|++..+.
T Consensus       173 -~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          173 -PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             -CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence             1223566777778888777777666553  56777777776554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=5.8e-17  Score=162.35  Aligned_cols=173  Identities=24%  Similarity=0.301  Sum_probs=144.1

Q ss_pred             hcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEc
Q 005744          208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL  287 (679)
Q Consensus       208 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L  287 (679)
                      ...+++.+++++|.+..++....+++|++|++++|.+.+ ++.  +..+++|++|++++|.++.+|. +..+++|++|++
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L  119 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL  119 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred             hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence            456799999999999888765588999999999998874 444  5889999999999999888765 889999999999


Q ss_pred             CCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744          288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE  367 (679)
Q Consensus       288 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (679)
                      ++|.+...+.++.+++|++|++++|.++.+ ..++.+++|++|++++ +.++.+++  ++.+++|++|++++|.+..   
T Consensus       120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~L~~N~i~~---  192 (291)
T 1h6t_A          120 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHISD---  192 (291)
T ss_dssp             TTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCB---
T ss_pred             CCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccC-Cccccchh--hcCCCccCEEECCCCcCCC---
Confidence            999988877888999999999999999888 4688999999999998 57777766  7889999999999987642   


Q ss_pred             cCCcCChhhhhcCCCCceEEeecCCCccCC
Q 005744          368 GQSNASLGELKQLSRLTTLEVHIPDAQVMP  397 (679)
Q Consensus       368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  397 (679)
                            +..+..+++|+.|++++|.+...+
T Consensus       193 ------l~~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          193 ------LRALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             ------CGGGTTCTTCSEEEEEEEEEECCC
T ss_pred             ------ChhhccCCCCCEEECcCCcccCCc
Confidence                  245788889999999888765433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.71  E-value=8.9e-17  Score=157.53  Aligned_cols=165  Identities=22%  Similarity=0.336  Sum_probs=144.3

Q ss_pred             cccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-
Q 005744          197 NVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-  273 (679)
Q Consensus       197 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-  273 (679)
                      .+..+..+|...+..++.|++++|.+..++.. + .+++|++|++++|.+.+ ++...|..+++|++|++++|.++.+| 
T Consensus        22 ~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~  100 (251)
T 3m19_A           22 QGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPL  100 (251)
T ss_dssp             TTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             CCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcccccCh
Confidence            44566677776778999999999999887764 3 89999999999999885 55555699999999999999999886 


Q ss_pred             ccccCCcCCCEEEcCCcccCC-c-ccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCC
Q 005744          274 SSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLT  350 (679)
Q Consensus       274 ~~i~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~  350 (679)
                      ..+..+++|++|++++|.+.. + ..++++++|++|++++|.++.+|. .++.+++|++|++++ +.++.+++..+..++
T Consensus       101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~  179 (251)
T 3m19_A          101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLG  179 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCT
T ss_pred             hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCC
Confidence            557899999999999999998 4 457999999999999999999987 589999999999999 688899887799999


Q ss_pred             CCcEEEccCCccc
Q 005744          351 RLEELYMGNSFTQ  363 (679)
Q Consensus       351 ~L~~L~l~~~~~~  363 (679)
                      +|++|++++|.+.
T Consensus       180 ~L~~L~l~~N~~~  192 (251)
T 3m19_A          180 KLQTITLFGNQFD  192 (251)
T ss_dssp             TCCEEECCSCCBC
T ss_pred             CCCEEEeeCCcee
Confidence            9999999999774

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.71  E-value=8.9e-18  Score=186.33  Aligned_cols=144  Identities=17%  Similarity=0.176  Sum_probs=118.5

Q ss_pred             Cceecc------CCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHHHhcCC--ChHHHHHHHHHhhc
Q 005744            8 EDFLDW------LLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK--SPRIWKDAVNQLSN   79 (679)
Q Consensus         8 ~~~~~~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~--~~~~W~~~~~~l~~   79 (679)
                      .+|+|+      +|+++|||+||++++...     ..++.++|   |+|+||||+++|+.|+++  +.++|+..      
T Consensus       285 ~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~------  350 (1221)
T 1vt4_I          285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV------  350 (1221)
T ss_dssp             SSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC------
T ss_pred             eEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC------
Confidence            468888      999999999999995432     23344444   999999999999999976  78889753      


Q ss_pred             cCCCcccccccccceeeeccccCChhhH-HHHHHhccccCCCCcccHHhHHHHHhhcccccccchHHHHHHHHHHHHHHH
Q 005744           80 SNPRKIQGMDADLSSIELSYEFLKCKEV-KSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNL  158 (679)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~SY~~L~~~~l-k~cfl~~~~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~~~L  158 (679)
                             .......++.+||+.||.+ . |.||+|||+||+++.|.++.++.+|+++|.       +    .+.+++++|
T Consensus       351 -------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e----dAe~~L~eL  411 (1221)
T 1vt4_I          351 -------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S----DVMVVVNKL  411 (1221)
T ss_dssp             -------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H----HHHHHHHHH
T ss_pred             -------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------H----HHHHHHHHH
Confidence                   0122378899999999998 7 999999999999999999999999999981       1    245689999


Q ss_pred             HhccccccCCCCCceEehhhHHHHHH
Q 005744          159 KSASLLFDGDSEDHAKMHRIIHAIAV  184 (679)
Q Consensus       159 ~~~~~~~~~~~~~~~~mhdli~~l~~  184 (679)
                      +++|+++..++...|+|||++++++.
T Consensus       412 vdRSLLq~d~~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          412 HKYSLVEKQPKESTISIPSIYLELKV  437 (1221)
T ss_dssp             HTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred             HhhCCEEEeCCCCEEEehHHHHHHhc
Confidence            99999987655678999999999663

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=5.9e-17  Score=162.26  Aligned_cols=184  Identities=21%  Similarity=0.282  Sum_probs=151.8

Q ss_pred             EEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC
Q 005744          215 ISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD  294 (679)
Q Consensus       215 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~  294 (679)
                      +.+..+.+..+.....+++|+.|++++|.+. .++.  +..+++|++|++++|.++.++. +.++++|++|++++|.+..
T Consensus        29 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~  104 (291)
T 1h6t_A           29 DNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD  104 (291)
T ss_dssp             HHTTCSCTTSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred             HHhcCCCcccccchhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC
Confidence            3444555544444447899999999999876 4554  5889999999999999999887 9999999999999999998


Q ss_pred             cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCCh
Q 005744          295 VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASL  374 (679)
Q Consensus       295 ~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  374 (679)
                      ++.++.+++|++|++++|.++.++ .+..+++|++|++++ +.++.++  .++.+++|++|++++|.+..         +
T Consensus       105 ~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~-n~l~~~~--~l~~l~~L~~L~L~~N~l~~---------~  171 (291)
T 1h6t_A          105 LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDIT--VLSRLTKLDTLSLEDNQISD---------I  171 (291)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCG--GGGGCTTCSEEECCSSCCCC---------C
T ss_pred             ChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccC-CcCCcch--hhccCCCCCEEEccCCcccc---------c
Confidence            777999999999999999999985 689999999999999 5777774  38999999999999997742         2


Q ss_pred             hhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCc
Q 005744          375 GELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDV  415 (679)
Q Consensus       375 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  415 (679)
                      ..+..+++|+.|++++|.+..++....+++|+.|++..+.+
T Consensus       172 ~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          172 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred             hhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence            23888999999999999988876544677777777765543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.69  E-value=1.3e-16  Score=164.58  Aligned_cols=146  Identities=16%  Similarity=0.184  Sum_probs=66.8

Q ss_pred             EEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCC-cCC-ccccCCcCCCE-EEcCCcc
Q 005744          215 ISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLP-SSLGCLINLRT-LSLENCL  291 (679)
Q Consensus       215 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp-~~i~~l~~L~~-L~L~~~~  291 (679)
                      ++-++++++++|..+ .+++++|++++|.+. .+|...|.++++|++|+|++|.+. .+| ..|.++++|+. +.+.+|.
T Consensus        14 v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           14 FLCQESKVTEIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             EEEESTTCCSCCTTC-CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred             EEecCCCCCccCcCc-CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence            334444444444433 234555555555443 344444455555555555555543 233 23444444443 3333344


Q ss_pred             cCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCC-CCcEEEccCCcc
Q 005744          292 VVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLT-RLEELYMGNSFT  362 (679)
Q Consensus       292 ~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~-~L~~L~l~~~~~  362 (679)
                      +..  +..+..+++|++|++++|+++.+|.. +....++..|++.+++.+..++...+..+. .++.|++++|.+
T Consensus        92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            444  34445555555555555555544431 223344445555444455555444344432 355555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.68  E-value=4.5e-17  Score=165.10  Aligned_cols=151  Identities=14%  Similarity=0.099  Sum_probs=69.8

Q ss_pred             CCCeEEEccCCCccc-CCcc---cCCcceeeeeeccCCcccCCC---chhhcCCCCccEEEeCCCcCCcCC-ccccCCcC
Q 005744          210 EAPTAISIPFRGIYE-LPER---LGFLKLKLFLFFTENLSLQIP---DPFFEGMTELRVLDLTGFRFHSLP-SSLGCLIN  281 (679)
Q Consensus       210 ~~l~~l~l~~~~~~~-l~~~---~~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~  281 (679)
                      .++++|++++|.+.. .|..   ..+++|++|++++|.+.+..+   ...+..+++|++|++++|.+..+| ..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            345555555555532 2222   235555555555555443322   111224555555555555555442 34555555


Q ss_pred             CCEEEcCCcccCC------cccccCCCCCcEEEecCCCCCccchh----hhcCCCCCEEcccCCcccccc-CcccccCC-
Q 005744          282 LRTLSLENCLVVD------VAIIGDLKKLEILSLKHSSIEQLPRE----IGQLTCLKLLDLSNCSKLKEI-RPNVISNL-  349 (679)
Q Consensus       282 L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~l~~~~~l~~l-p~~~l~~l-  349 (679)
                      |++|++++|.+..      ...++++++|++|++++|+++.+|..    ++.+++|++|++++ +.++.. |+. ++.+ 
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~~-~~~~~  248 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH-NSLRATVNPS-APRCM  248 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT-SCCCCCCCSC-CSSCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC-CCCCccchhh-HHhcc
Confidence            5555555554322      12224455555555555555544432    34445555555555 333333 322 3333 


Q ss_pred             --CCCcEEEccCCcc
Q 005744          350 --TRLEELYMGNSFT  362 (679)
Q Consensus       350 --~~L~~L~l~~~~~  362 (679)
                        ++|++|++++|.+
T Consensus       249 ~~~~L~~L~Ls~N~l  263 (310)
T 4glp_A          249 WSSALNSLNLSFAGL  263 (310)
T ss_dssp             CCTTCCCEECCSSCC
T ss_pred             CcCcCCEEECCCCCC
Confidence              3555555555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.68  E-value=3e-17  Score=168.65  Aligned_cols=126  Identities=18%  Similarity=0.230  Sum_probs=58.6

Q ss_pred             cceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCc--CCccccCCcCCCEEEcCCcccCC--cccccCCCCCcEE
Q 005744          232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS--LPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEIL  307 (679)
Q Consensus       232 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L  307 (679)
                      ++++.|++.+|.+.+..+. + ..+++|++|++++|.++.  +|..+..+++|++|++++|.+..  +..++++++|++|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-C-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred             ccceEEEcCCccccccchh-h-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence            4445555554444433322 1 244555555555554432  44444555555555555554443  4444455555555


Q ss_pred             EecCC-CCC--ccchhhhcCCCCCEEcccCCccccc--cCcccccCCC-CCcEEEccCC
Q 005744          308 SLKHS-SIE--QLPREIGQLTCLKLLDLSNCSKLKE--IRPNVISNLT-RLEELYMGNS  360 (679)
Q Consensus       308 ~l~~~-~l~--~lp~~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~l~-~L~~L~l~~~  360 (679)
                      ++++| .++  .+|..+.++++|++|++++|..++.  ++. .+..++ +|++|++++|
T Consensus       148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGY  205 (336)
T ss_dssp             ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSC
T ss_pred             ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCC
Confidence            55555 444  2444444555555555555423332  222 134444 5555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.67  E-value=2.5e-17  Score=169.30  Aligned_cols=132  Identities=18%  Similarity=0.185  Sum_probs=97.4

Q ss_pred             hcCC--CCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC---cccccCCCCCcEEEecCCCCC-ccchhhhcCCC
Q 005744          253 FEGM--TELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTC  326 (679)
Q Consensus       253 ~~~l--~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~  326 (679)
                      +..+  +++++|++++|.+...+..+..+++|++|++++|.+..   +..+..+++|++|++++|.++ ..|..++++++
T Consensus        64 ~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~  143 (336)
T 2ast_B           64 TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN  143 (336)
T ss_dssp             HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTT
T ss_pred             HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCC
Confidence            4555  78999999999988776677788999999999998764   567888899999999998877 56777888888


Q ss_pred             CCEEcccCCccccc--cCcccccCCCCCcEEEccCC-cccceeccCCcCChhhhhcCC-CCceEEeecC
Q 005744          327 LKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNS-FTQWKVEGQSNASLGELKQLS-RLTTLEVHIP  391 (679)
Q Consensus       327 L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~  391 (679)
                      |++|++++|..++.  ++.. ++++++|++|++++| .+...      .....+..++ +|+.|++++|
T Consensus       144 L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~------~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          144 LVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK------HVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             CSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH------HHHHHHHHSCTTCCEEECCSC
T ss_pred             CCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH------HHHHHHHhcccCCCEEEeCCC
Confidence            99999988756653  4333 677888888888887 54310      1123455566 6666666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.66  E-value=1.1e-15  Score=147.26  Aligned_cols=149  Identities=21%  Similarity=0.315  Sum_probs=129.5

Q ss_pred             CeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc-cccCCcCCCEEEcCCc
Q 005744          212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENC  290 (679)
Q Consensus       212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~  290 (679)
                      .+.++.+++.+..+|..+. ++|++|++++|.+.+..| ..|..+++|++|++++|.++.+|. .+..+++|++|++++|
T Consensus        21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            4568888888988887654 889999999999885444 445899999999999999998874 4689999999999999


Q ss_pred             ccCC-c-ccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccc
Q 005744          291 LVVD-V-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ  363 (679)
Q Consensus       291 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (679)
                      .+.. + ..+..+++|++|++++|+++.+|..+..+++|++|++++ +.++.+++..+..+++|+.|++++|.+.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            9988 4 457899999999999999999999999999999999999 6888888877889999999999998764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.66  E-value=5.4e-16  Score=159.90  Aligned_cols=117  Identities=15%  Similarity=0.193  Sum_probs=53.4

Q ss_pred             eeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc-cccCCcCCCEEEcCCcccCC---cccccCCCCCcE-EEec
Q 005744          236 LFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD---VAIIGDLKKLEI-LSLK  310 (679)
Q Consensus       236 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~-L~l~  310 (679)
                      +++.+++.++ .+|.++   .+++++|+|++|.++.+|. .|.++++|++|+|++|.+.+   +..|.++++|++ +.++
T Consensus        13 ~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             EEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            4444444443 455433   2345555555555555543 34555555555555555433   123444544443 3333


Q ss_pred             CCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEc
Q 005744          311 HSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM  357 (679)
Q Consensus       311 ~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l  357 (679)
                      +|+++.+|. .+..+++|++|++++ +.++.+|+..+....++..|++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l  135 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDI  135 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEE
T ss_pred             CCcccccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhh
Confidence            345554432 244455555555554 3444444332333333444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.66  E-value=6.3e-16  Score=147.89  Aligned_cols=149  Identities=13%  Similarity=0.246  Sum_probs=119.9

Q ss_pred             eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc-cccCCcCCCEEEcCCcc
Q 005744          213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL  291 (679)
Q Consensus       213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~  291 (679)
                      +.++++++.+..+|..+ ...++.|++++|.+.+..+..+|..+++|++|++++|.++.++. .+.++++|++|++++|.
T Consensus        14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            47888888888888755 34568888888888755566667888899999999998887754 78888899999999988


Q ss_pred             cCC--cccccCCCCCcEEEecCCCCCcc-chhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccc
Q 005744          292 VVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ  363 (679)
Q Consensus       292 ~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (679)
                      +..  +..++.+++|++|++++|.++.+ |..+..+++|++|++++ +.++.+++..+..+++|++|++++|.+.
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            887  45588888899999998888877 55688888888888888 6777776666888888888888888654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=5e-16  Score=170.57  Aligned_cols=175  Identities=24%  Similarity=0.297  Sum_probs=149.7

Q ss_pred             hhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEE
Q 005744          207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS  286 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  286 (679)
                      ..+..++.|++++|.+..++....+++|+.|++++|.+.+ ++.  +..+++|++|+|++|.+..+| .+..+++|++|+
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred             hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence            4467899999999999888865589999999999998874 444  689999999999999999877 689999999999


Q ss_pred             cCCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccccee
Q 005744          287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV  366 (679)
Q Consensus       287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~  366 (679)
                      |++|.+..++.+..+++|+.|+|++|.++.+ ..+..+++|++|+|++ +.+..+++  +..+++|+.|++++|.+..  
T Consensus       116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L~Ls~N~i~~--  189 (605)
T 1m9s_A          116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHISD--  189 (605)
T ss_dssp             CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCB--
T ss_pred             ecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcC-CcCCCchh--hccCCCCCEEECcCCCCCC--
Confidence            9999998877899999999999999999988 5689999999999998 56777766  8899999999999997742  


Q ss_pred             ccCCcCChhhhhcCCCCceEEeecCCCccCCc
Q 005744          367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ  398 (679)
Q Consensus       367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  398 (679)
                             +..+..+++|+.|++++|.+...|.
T Consensus       190 -------l~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          190 -------LRALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             -------CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred             -------ChHHccCCCCCEEEccCCcCcCCcc
Confidence                   2568889999999999887765443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.65  E-value=7.5e-16  Score=146.27  Aligned_cols=169  Identities=24%  Similarity=0.344  Sum_probs=133.9

Q ss_pred             eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCcc-ccCCcCCCEEEcCCcc
Q 005744          213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENCL  291 (679)
Q Consensus       213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~L~~~~  291 (679)
                      +.++.+++.+..+|..+ .++|++|++++|.+. .++...|..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            46677777777777654 468899999998877 56666678899999999999999888654 6889999999999999


Q ss_pred             cCC-c-ccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceecc
Q 005744          292 VVD-V-AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG  368 (679)
Q Consensus       292 ~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~  368 (679)
                      +.. + ..++++++|++|++++|.++.+|.. +.++++|++|++++ +.++.+++..+..+++|++|++++|.+.     
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----  161 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWD-----  161 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCee-----
Confidence            888 4 4578999999999999999988775 68899999999998 5778888877888999999999988553     


Q ss_pred             CCcCChhhhhcCCCCceEEeecCCCc-cCCc
Q 005744          369 QSNASLGELKQLSRLTTLEVHIPDAQ-VMPQ  398 (679)
Q Consensus       369 ~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~  398 (679)
                               ..+++|+.|+++.|.+. .+|.
T Consensus       162 ---------~~~~~l~~L~~~~n~~~g~ip~  183 (208)
T 2o6s_A          162 ---------CTCPGIRYLSEWINKHSGVVRN  183 (208)
T ss_dssp             ---------CCTTTTHHHHHHHHHCTTTBBC
T ss_pred             ---------cCCCCHHHHHHHHHhCCceeec
Confidence                     23456777777766544 3443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.65  E-value=5.7e-16  Score=156.96  Aligned_cols=220  Identities=14%  Similarity=0.091  Sum_probs=169.0

Q ss_pred             CCCeEEEccCCCcc-----cCCcccCCcceeeeeeccCCcccCCCchhh-cCCCCccEEEeCCCcCCcC-C----ccccC
Q 005744          210 EAPTAISIPFRGIY-----ELPERLGFLKLKLFLFFTENLSLQIPDPFF-EGMTELRVLDLTGFRFHSL-P----SSLGC  278 (679)
Q Consensus       210 ~~l~~l~l~~~~~~-----~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~l-p----~~i~~  278 (679)
                      ..++.+.+.+..+.     .+.....+++|++|++++|.+.+..|..++ ..+++|++|++++|.++.. |    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            35678888777663     222333567799999999999888887765 7899999999999998853 3    34567


Q ss_pred             CcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCc---cchh--hhcCCCCCEEcccCCccccccCcc---cccC
Q 005744          279 LINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQ---LPRE--IGQLTCLKLLDLSNCSKLKEIRPN---VISN  348 (679)
Q Consensus       279 l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~---lp~~--i~~L~~L~~L~l~~~~~l~~lp~~---~l~~  348 (679)
                      +++|++|++++|.+..  +..++++++|++|++++|++..   ++..  ++.+++|++|++++ +.++.++..   .++.
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN-TGMETPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS-SCCCCHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC-CCCCchHHHHHHHHhc
Confidence            9999999999999987  5789999999999999998764   4333  47899999999999 566665542   2567


Q ss_pred             CCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCccc--CCCCCCCcc
Q 005744          349 LTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWS--WSDGYETSK  426 (679)
Q Consensus       349 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~l~  426 (679)
                      +++|++|++++|.+....+    ..+..+..+++|+.|++++|.+..+|..+. ++|+.|++..+.+..  ....+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p----~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~l~~~~~~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVN----PSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNRLNRAPQPDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCC----SCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCCCCSCCCTTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccch----hhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCcCCCCchhhhCCCcc
Confidence            8999999999998754221    223334444799999999999998888774 899999998776543  356678899


Q ss_pred             eEEecCCCc
Q 005744          427 TLKLQLNNS  435 (679)
Q Consensus       427 ~L~L~~~~~  435 (679)
                      .|++++|..
T Consensus       298 ~L~L~~N~l  306 (310)
T 4glp_A          298 NLTLDGNPF  306 (310)
T ss_dssp             CEECSSTTT
T ss_pred             EEECcCCCC
Confidence            999998764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=8.7e-16  Score=144.34  Aligned_cols=148  Identities=20%  Similarity=0.246  Sum_probs=91.6

Q ss_pred             hcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCc-CCccccCCcCCCEEE
Q 005744          208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS-LPSSLGCLINLRTLS  286 (679)
Q Consensus       208 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~  286 (679)
                      .+++++++++++|.+..++....+++|++|++++|.+. .+ +. +..+++|++|++++|.++. .|..++.+++|++|+
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~-~~-~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NY-NP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS-CC-GG-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC-cc-hh-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            35567777777777766664336667777777666433 22 22 4666667777777666664 455666666666666


Q ss_pred             cCCcccCC--cccccCCCCCcEEEecCCC-CCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcc
Q 005744          287 LENCLVVD--VAIIGDLKKLEILSLKHSS-IEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT  362 (679)
Q Consensus       287 L~~~~~~~--~~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~  362 (679)
                      +++|.+..  +..++.+++|++|++++|. ++.+| .+..+++|++|++++ +.++.++.  +..+++|++|++++|.+
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~~--l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYRG--IEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCTT--GGGCSSCCEEEECBC--
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChHH--hccCCCCCEEEeeCccc
Confidence            66666665  5566666666666666665 66665 466666666666666 34555542  56666666666666644

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.64  E-value=1.3e-15  Score=145.57  Aligned_cols=148  Identities=22%  Similarity=0.328  Sum_probs=112.6

Q ss_pred             eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcc
Q 005744          213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL  291 (679)
Q Consensus       213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~  291 (679)
                      +.++.+++.+..+|..+. ++++.|++++|.+. .++...|..+++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            467777888888876553 67888888888776 45555567888888888888888766 6778888888888888888


Q ss_pred             cCC-c-ccccCCCCCcEEEecCCCCCccc-hhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccc
Q 005744          292 VVD-V-AIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ  363 (679)
Q Consensus       292 ~~~-~-~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (679)
                      +.. | ..+..+++|++|++++|.++.++ ..+..+++|++|++++ +.++.+++..+..+++|++|++++|.+.
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            877 4 34677888888888888888764 4577888888888888 6677777766777888888888877653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.64  E-value=5.4e-17  Score=170.10  Aligned_cols=184  Identities=17%  Similarity=0.122  Sum_probs=124.7

Q ss_pred             hhcCCCeEEEccCCCccc-----CCccc-CCcceeeeeeccCC---cccCCCchh------hcCCCCccEEEeCCCcCCc
Q 005744          207 KIDEAPTAISIPFRGIYE-----LPERL-GFLKLKLFLFFTEN---LSLQIPDPF------FEGMTELRVLDLTGFRFHS  271 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~---~~~~~~~~~------~~~l~~L~~L~l~~~~l~~  271 (679)
                      ...+++++|++++|.+..     ++..+ .+++|++|++++|.   +.+.+|..+      +..+++|++|++++|.++.
T Consensus        29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  108 (386)
T 2ca6_A           29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  108 (386)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence            345678888888887743     22223 67888888888753   334455443      3678888888888888775


Q ss_pred             -----CCccccCCcCCCEEEcCCcccCC--ccc----ccCC---------CCCcEEEecCCCCC--ccc---hhhhcCCC
Q 005744          272 -----LPSSLGCLINLRTLSLENCLVVD--VAI----IGDL---------KKLEILSLKHSSIE--QLP---REIGQLTC  326 (679)
Q Consensus       272 -----lp~~i~~l~~L~~L~L~~~~~~~--~~~----i~~L---------~~L~~L~l~~~~l~--~lp---~~i~~L~~  326 (679)
                           +|..+..+++|++|++++|.+..  +..    +..+         ++|++|++++|.++  .+|   ..+..+++
T Consensus       109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  188 (386)
T 2ca6_A          109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL  188 (386)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence                 67778888888888888888764  223    3333         78888888888876  444   45677888


Q ss_pred             CCEEcccCCccccc-----cCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCc
Q 005744          327 LKLLDLSNCSKLKE-----IRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ  394 (679)
Q Consensus       327 L~~L~l~~~~~l~~-----lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  394 (679)
                      |++|++++| .++.     +.+..+.++++|++|++++|.+....   .......+..+++|+.|++++|.+.
T Consensus       189 L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---~~~l~~~l~~~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          189 LHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---SSALAIALKSWPNLRELGLNDCLLS  257 (386)
T ss_dssp             CCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---HHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             cCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---HHHHHHHHccCCCcCEEECCCCCCc
Confidence            888888884 4441     22213677888888888888653100   0123345677788888888877654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.64  E-value=1.2e-15  Score=143.47  Aligned_cols=151  Identities=17%  Similarity=0.259  Sum_probs=130.7

Q ss_pred             CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC--cccccCCCCCcEE
Q 005744          230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEIL  307 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L  307 (679)
                      .+++|++|++++|.+. .+| . +..+++|++|++++|.++.++ .+..+++|++|++++|.+..  +..++++++|++|
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            6889999999999887 667 3 589999999999999877665 78999999999999999987  8999999999999


Q ss_pred             EecCCCCCc-cchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceE
Q 005744          308 SLKHSSIEQ-LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTL  386 (679)
Q Consensus       308 ~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  386 (679)
                      ++++|.++. .|..++.+++|++|++++|..++.+|.  ++.+++|++|++++|.+.         .+..+..+++|+.|
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~---------~~~~l~~l~~L~~L  186 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH---------DYRGIEDFPKLNQL  186 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC---------CCTTGGGCSSCCEE
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc---------ChHHhccCCCCCEE
Confidence            999999985 778899999999999999766888874  899999999999999774         23378889999999


Q ss_pred             EeecCCCcc
Q 005744          387 EVHIPDAQV  395 (679)
Q Consensus       387 ~l~~~~~~~  395 (679)
                      ++++|.+..
T Consensus       187 ~l~~N~i~~  195 (197)
T 4ezg_A          187 YAFSQTIGG  195 (197)
T ss_dssp             EECBC----
T ss_pred             EeeCcccCC
Confidence            999998653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=2.7e-16  Score=154.89  Aligned_cols=172  Identities=19%  Similarity=0.209  Sum_probs=124.3

Q ss_pred             hcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEc
Q 005744          208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL  287 (679)
Q Consensus       208 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L  287 (679)
                      ...++..+++.++.+..++....+++|++|++++|.+. .++ . +..+++|++|++++|.++.+|. +.++++|++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence            34455566677777776664447788888888887765 455 2 4778888888888888887776 788888888888


Q ss_pred             CCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744          288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE  367 (679)
Q Consensus       288 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (679)
                      ++|.+...+.+.. .+|++|++++|.++.+| .+..+++|++|++++ +.++.++.  ++.+++|++|++++|.+...  
T Consensus        93 ~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~L~~L~L~~N~i~~~--  165 (263)
T 1xeu_A           93 NRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHGNEITNT--  165 (263)
T ss_dssp             CSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG--GGGCTTCCEEECTTSCCCBC--
T ss_pred             CCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChH--HccCCCCCEEECCCCcCcch--
Confidence            8888877333444 78888888888888776 478888888888887 56777753  77888888888888866421  


Q ss_pred             cCCcCChhhhhcCCCCceEEeecCCCccCC
Q 005744          368 GQSNASLGELKQLSRLTTLEVHIPDAQVMP  397 (679)
Q Consensus       368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  397 (679)
                             ..+..+++|+.|++++|.+...+
T Consensus       166 -------~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          166 -------GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             -------TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             -------HHhccCCCCCEEeCCCCcccCCc
Confidence                   45667778888888877665443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.63  E-value=3.6e-16  Score=171.72  Aligned_cols=187  Identities=20%  Similarity=0.264  Sum_probs=154.6

Q ss_pred             CCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCc
Q 005744          211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC  290 (679)
Q Consensus       211 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~  290 (679)
                      .+..+.+..+.+..+.....+++|+.|++++|.+. .++.  +..+++|++|+|++|.++.+|. +..+++|++|+|++|
T Consensus        22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N   97 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN   97 (605)
T ss_dssp             HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred             HHHHHhccCCCcccccchhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC
Confidence            34444555566655555457899999999999876 5553  5899999999999999999887 999999999999999


Q ss_pred             ccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCC
Q 005744          291 LVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQS  370 (679)
Q Consensus       291 ~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~  370 (679)
                      .+..++.++.+++|++|+|++|.+..+| .+..+++|+.|+|++ +.+..++.  ++.+++|+.|++++|.+..      
T Consensus        98 ~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~N~l~~------  167 (605)
T 1m9s_A           98 KIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQISD------  167 (605)
T ss_dssp             CCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCS-SCCCCCGG--GGSCTTCSEEECCSSCCCC------
T ss_pred             CCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCC-CccCCchh--hcccCCCCEEECcCCcCCC------
Confidence            9998778999999999999999999986 599999999999999 57777733  8999999999999997742      


Q ss_pred             cCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCC
Q 005744          371 NASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGD  414 (679)
Q Consensus       371 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  414 (679)
                         +..+..+++|+.|++++|.+..++....+++|+.|++..+.
T Consensus       168 ---~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          168 ---IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             ---CGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred             ---chhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence               12388899999999999998887544477778887775544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.61  E-value=9.1e-15  Score=158.69  Aligned_cols=178  Identities=17%  Similarity=0.207  Sum_probs=134.6

Q ss_pred             cCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcC
Q 005744          209 DEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLE  288 (679)
Q Consensus       209 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~  288 (679)
                      ..+++.|++++|.+..+|..+ +++|++|++++|.+. .+|    ..+++|++|++++|.++.+|. +.+  +|++|+++
T Consensus        58 ~~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           58 INQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             HTTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred             cCCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence            347899999999998888766 478999999999887 677    347889999999999988888 665  89999999


Q ss_pred             CcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744          289 NCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE  367 (679)
Q Consensus       289 ~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (679)
                      +|.+.. |.   .+++|++|++++|.++.+|.   .+++|++|++++ +.++.+|.  ++  ++|++|++++|.+.. ++
T Consensus       129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~--l~--~~L~~L~Ls~N~L~~-lp  196 (571)
T 3cvr_A          129 NNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPE--LP--ESLEALDVSTNLLES-LP  196 (571)
T ss_dssp             SSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC--CC--TTCCEEECCSSCCSS-CC
T ss_pred             CCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCC-CCCCCcch--hh--CCCCEEECcCCCCCc-hh
Confidence            999888 55   68899999999999998887   678999999998 56777877  55  889999999987752 11


Q ss_pred             cCCcCChhhh-hcCCCCceEEeecCCCccCCccc-cccccceeEEE
Q 005744          368 GQSNASLGEL-KQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRIC  411 (679)
Q Consensus       368 ~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~  411 (679)
                          .....+ .....|+.|++++|.+..+|..+ .+++|+.|++.
T Consensus       197 ----~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~  238 (571)
T 3cvr_A          197 ----AVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE  238 (571)
T ss_dssp             ----CCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECC
T ss_pred             ----hHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEee
Confidence                111111 11123388999999888887765 45555555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.60  E-value=2e-15  Score=156.32  Aligned_cols=172  Identities=21%  Similarity=0.247  Sum_probs=123.5

Q ss_pred             eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhc-CCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCc
Q 005744          213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFE-GMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENC  290 (679)
Q Consensus       213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~  290 (679)
                      +.++++++.+..+|..+ .+.++.|++++|.+. .++...|. .+++|++|++++|.++.++ ..+.++++|++|+|++|
T Consensus        21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccC-CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            46777777777777644 345778888888776 44544455 7888888888888888775 45788888888888888


Q ss_pred             ccCC--cccccCCCCCcEEEecCCCCCcc-chhhhcCCCCCEEcccCCccccccCcccc---cCCCCCcEEEccCCcccc
Q 005744          291 LVVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVI---SNLTRLEELYMGNSFTQW  364 (679)
Q Consensus       291 ~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l---~~l~~L~~L~l~~~~~~~  364 (679)
                      .+..  +..|..+.+|++|++++|.++.+ |..+..+++|++|++++ +.++.+|...+   ..+++|+.|++++|.+..
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            8777  34578888888888888888866 45677888888888887 67777777655   567888888888887642


Q ss_pred             eeccCCcCChhhhhcCCC--CceEEeecCCCc
Q 005744          365 KVEGQSNASLGELKQLSR--LTTLEVHIPDAQ  394 (679)
Q Consensus       365 ~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~  394 (679)
                             .....+..++.  |+.|++++|.+.
T Consensus       178 -------l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 -------LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             -------CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             -------cCHHHhhhccHhhcceEEecCCCcc
Confidence                   12345566665  377888877654

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.59  E-value=2.2e-15  Score=167.14  Aligned_cols=164  Identities=18%  Similarity=0.283  Sum_probs=130.1

Q ss_pred             Cceec---cCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHhhccCCCc
Q 005744            8 EDFLD---WLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRK   84 (679)
Q Consensus         8 ~~~~~---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~W~~~~~~l~~~~~~~   84 (679)
                      .+|++   ++|+.+||++||.+.++..  .....+.+++|+++|+|+||||+.+|+.|+.+. ..|+.+++.+.......
T Consensus       276 ~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~  352 (591)
T 1z6t_A          276 PKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKR  352 (591)
T ss_dssp             CEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCC
T ss_pred             CceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHH
Confidence            45666   4899999999999999752  223356789999999999999999999998653 47999999987654322


Q ss_pred             ccc-----cccccceeeeccccCChhhHHHHHHhccccCCCCcccHHhHHHHHhhcccccccchHHHHHHHHHHHHHHHH
Q 005744           85 IQG-----MDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLK  159 (679)
Q Consensus        85 ~~~-----~~~~~~~l~~SY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~~~L~  159 (679)
                      +..     ......++..||+.||.+ .|.||+++|+||+|+.|+.+.+...|.+++            ..+.+++++|+
T Consensus       353 ~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~------------~~~~~~l~~L~  419 (591)
T 1z6t_A          353 IRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET------------EEVEDILQEFV  419 (591)
T ss_dssp             SSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHH
T ss_pred             hhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH------------HHHHHHHHHHH
Confidence            211     112367899999999998 899999999999999999999999996542            12456788999


Q ss_pred             hccccccC--CCCCceEehhhHHHHHHHHH
Q 005744          160 SASLLFDG--DSEDHAKMHRIIHAIAVSIA  187 (679)
Q Consensus       160 ~~~~~~~~--~~~~~~~mhdli~~l~~~~~  187 (679)
                      ++++++..  +....|+||+++++++....
T Consensus       420 ~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          420 NKSLLFCDRNGKSFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             HTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred             hCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence            99999743  23447999999999998773

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.59  E-value=3.4e-15  Score=141.66  Aligned_cols=160  Identities=19%  Similarity=0.249  Sum_probs=135.1

Q ss_pred             ccchhhhhhhhcCCCeEEEccCCCcccCCccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCcc
Q 005744          198 VADLKEELDKIDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS  275 (679)
Q Consensus       198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~  275 (679)
                      +..+..+|....+++++|++++|.+..++...  .+++|++|++++|.+. .++...|..+++|++|++++|.++.+|..
T Consensus        16 ~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   94 (208)
T 2o6s_A           16 SQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNG   94 (208)
T ss_dssp             SSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence            34455566666789999999999998888754  8999999999999887 67777779999999999999999988754


Q ss_pred             -ccCCcCCCEEEcCCcccCC-c-ccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCC
Q 005744          276 -LGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTR  351 (679)
Q Consensus       276 -i~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~  351 (679)
                       +..+++|++|++++|.+.. + ..++++++|++|++++|.++.+|.. +..+++|++|++++|..        .+.+++
T Consensus        95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~  166 (208)
T 2o6s_A           95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPG  166 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTT
T ss_pred             HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCC
Confidence             7899999999999999988 4 4589999999999999999988876 78899999999999532        345678


Q ss_pred             CcEEEccCCccccee
Q 005744          352 LEELYMGNSFTQWKV  366 (679)
Q Consensus       352 L~~L~l~~~~~~~~~  366 (679)
                      |+.|++..+.+.+.+
T Consensus       167 l~~L~~~~n~~~g~i  181 (208)
T 2o6s_A          167 IRYLSEWINKHSGVV  181 (208)
T ss_dssp             THHHHHHHHHCTTTB
T ss_pred             HHHHHHHHHhCCcee
Confidence            899988888766433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.59  E-value=7.2e-15  Score=152.11  Aligned_cols=163  Identities=25%  Similarity=0.339  Sum_probs=94.4

Q ss_pred             ccchhhhhhhhcCCCeEEEccCCCcccCCccc---CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc
Q 005744          198 VADLKEELDKIDEAPTAISIPFRGIYELPERL---GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS  274 (679)
Q Consensus       198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~  274 (679)
                      +..+..+|...+..++.|++++|.+..++...   .+++|++|++++|.+. .++...|..+++|++|+|++|.++.+|.
T Consensus        27 ~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~  105 (361)
T 2xot_A           27 KQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDE  105 (361)
T ss_dssp             SSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCH
Confidence            34445555544555666666666665555432   4566666666666655 3333334666666666666666665533


Q ss_pred             -cccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchhh----hcCCCCCEEcccCCccccccCccccc
Q 005744          275 -SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPREI----GQLTCLKLLDLSNCSKLKEIRPNVIS  347 (679)
Q Consensus       275 -~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~i----~~L~~L~~L~l~~~~~l~~lp~~~l~  347 (679)
                       .+..+++|++|+|++|.+..  +..|.++++|++|++++|.++.+|..+    ..+++|++|++++ +.++.+|...+.
T Consensus       106 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~  184 (361)
T 2xot_A          106 FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQ  184 (361)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHH
T ss_pred             HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhh
Confidence             45666666666666666655  455666666666666666666666553    4566666666666 455666655455


Q ss_pred             CCCC--CcEEEccCCcc
Q 005744          348 NLTR--LEELYMGNSFT  362 (679)
Q Consensus       348 ~l~~--L~~L~l~~~~~  362 (679)
                      .++.  |+.|++++|.+
T Consensus       185 ~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          185 KLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             HSCHHHHTTEECCSSCE
T ss_pred             hccHhhcceEEecCCCc
Confidence            5554  35566666544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.59  E-value=2.8e-16  Score=164.60  Aligned_cols=86  Identities=13%  Similarity=0.136  Sum_probs=40.2

Q ss_pred             CCcceeeeeeccCCcccCCCch---hhcCCCCccEEEeCCCcCCc----CCccc-------cCCcCCCEEEcCCcccCC-
Q 005744          230 GFLKLKLFLFFTENLSLQIPDP---FFEGMTELRVLDLTGFRFHS----LPSSL-------GCLINLRTLSLENCLVVD-  294 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~l~~----lp~~i-------~~l~~L~~L~L~~~~~~~-  294 (679)
                      .+++|++|++++|.+....+..   .+..+++|++|++++|.+..    +|..+       ..+++|++|++++|.+.. 
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            4555555555555544322211   12445555555555543332    22222       345555555555555443 


Q ss_pred             -----cccccCCCCCcEEEecCCCCC
Q 005744          295 -----VAIIGDLKKLEILSLKHSSIE  315 (679)
Q Consensus       295 -----~~~i~~L~~L~~L~l~~~~l~  315 (679)
                           +..+.++++|++|++++|.++
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCC
Confidence                 223444555555555555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.59  E-value=9.3e-15  Score=143.83  Aligned_cols=148  Identities=21%  Similarity=0.255  Sum_probs=131.1

Q ss_pred             hhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEE
Q 005744          207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS  286 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  286 (679)
                      ....+++.|++++|.+..++....+++|++|++++|.+. .++.  +..+++|++|++++|.++.+|....  .+|++|+
T Consensus        38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~  112 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF  112 (263)
T ss_dssp             HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred             hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence            456789999999999999985558999999999999987 4555  6899999999999999999886444  9999999


Q ss_pred             cCCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccc
Q 005744          287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ  363 (679)
Q Consensus       287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (679)
                      +++|.+..++.++.+++|++|++++|+++.+| .++.+++|++|++++ +.++.++  .+..+++|+.|++++|.+.
T Consensus       113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~-N~i~~~~--~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG-NEITNTG--GLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             CCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTT-SCCCBCT--TSTTCCCCCEEEEEEEEEE
T ss_pred             ccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCC-CcCcchH--HhccCCCCCEEeCCCCccc
Confidence            99999998778999999999999999999997 699999999999999 6777773  3899999999999998764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.59  E-value=3.7e-16  Score=161.98  Aligned_cols=175  Identities=13%  Similarity=0.141  Sum_probs=83.5

Q ss_pred             EEccCCCccc-CCcccCC-cceeeeeeccCCcccCCCc----hhhcCCC-CccEEEeCCCcCCcC-CccccCC-----cC
Q 005744          215 ISIPFRGIYE-LPERLGF-LKLKLFLFFTENLSLQIPD----PFFEGMT-ELRVLDLTGFRFHSL-PSSLGCL-----IN  281 (679)
Q Consensus       215 l~l~~~~~~~-l~~~~~~-~~L~~L~l~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~l~~l-p~~i~~l-----~~  281 (679)
                      ..++.+.+.. +|..... ++|++|++++|.+.+ .+.    ..+..++ +|++|++++|.++.. +..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCCh-HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            3455555543 2333333 336666666666542 332    2345555 666666666666543 3334433     66


Q ss_pred             CCEEEcCCcccCC--ccc----ccCC-CCCcEEEecCCCCCccchh-----hhc-CCCCCEEcccCCccccccCcc----
Q 005744          282 LRTLSLENCLVVD--VAI----IGDL-KKLEILSLKHSSIEQLPRE-----IGQ-LTCLKLLDLSNCSKLKEIRPN----  344 (679)
Q Consensus       282 L~~L~L~~~~~~~--~~~----i~~L-~~L~~L~l~~~~l~~lp~~-----i~~-L~~L~~L~l~~~~~l~~lp~~----  344 (679)
                      |++|++++|.+..  +..    +..+ ++|++|++++|.++..+..     +.. .++|++|++++ +.++.....    
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~  160 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG-NDLGIKSSDELIQ  160 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT-SCGGGSCHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC-CcCCHHHHHHHHH
Confidence            6666666666554  222    3333 5666666666666544321     222 24666666666 333322111    


Q ss_pred             cccCCC-CCcEEEccCCcccceeccCCcCChhhhhcC-CCCceEEeecCCCc
Q 005744          345 VISNLT-RLEELYMGNSFTQWKVEGQSNASLGELKQL-SRLTTLEVHIPDAQ  394 (679)
Q Consensus       345 ~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~  394 (679)
                      .+..++ +|++|++++|.+.....   ......+... ++|+.|++++|.+.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~---~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNC---AELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCH---HHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHhcCCccccEeeecCCCCchhhH---HHHHHHHHhCCCCCCEEECCCCCCC
Confidence            123333 56666666665432110   0011123333 35666666655544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.58  E-value=1.9e-15  Score=156.68  Aligned_cols=202  Identities=11%  Similarity=0.181  Sum_probs=147.1

Q ss_pred             hhcCCCeEEEccCCCcccCCc-----cc-CCc-ceeeeeeccCCcccCCCchhhcCC-----CCccEEEeCCCcCCcCCc
Q 005744          207 KIDEAPTAISIPFRGIYELPE-----RL-GFL-KLKLFLFFTENLSLQIPDPFFEGM-----TELRVLDLTGFRFHSLPS  274 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~l~~-----~~-~~~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~lp~  274 (679)
                      ....++++|++++|.+...+.     .+ .++ +|++|++++|.+.+..+..+ ..+     ++|++|++++|.++..+.
T Consensus        19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL-VQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH-HHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH-HHHHhccCCCccEEECcCCcCChHHH
Confidence            455679999999999987764     33 677 89999999999876555443 443     999999999999986543


Q ss_pred             c-----ccCC-cCCCEEEcCCcccCC--ccc----ccCC-CCCcEEEecCCCCC-----ccchhhhcCC-CCCEEcccCC
Q 005744          275 S-----LGCL-INLRTLSLENCLVVD--VAI----IGDL-KKLEILSLKHSSIE-----QLPREIGQLT-CLKLLDLSNC  335 (679)
Q Consensus       275 ~-----i~~l-~~L~~L~L~~~~~~~--~~~----i~~L-~~L~~L~l~~~~l~-----~lp~~i~~L~-~L~~L~l~~~  335 (679)
                      .     +..+ ++|++|++++|.+..  +..    +..+ .+|++|++++|.++     .++..+..++ +|++|++++ 
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-  176 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG-  176 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT-
T ss_pred             HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC-
Confidence            2     5555 899999999999877  333    4443 69999999999988     5566677776 999999999 


Q ss_pred             ccccccCccc----ccCC-CCCcEEEccCCcccceeccCCcCChhhhhcC-CCCceEEeecCCCccCCccc------ccc
Q 005744          336 SKLKEIRPNV----ISNL-TRLEELYMGNSFTQWKVEGQSNASLGELKQL-SRLTTLEVHIPDAQVMPQDL------VFV  403 (679)
Q Consensus       336 ~~l~~lp~~~----l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~------~~~  403 (679)
                      +.++......    +... ++|++|++++|.+.....   ......+... ++|+.|++++|.+...+...      .++
T Consensus       177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~---~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~  253 (362)
T 3goz_A          177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY---AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK  253 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH---HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred             CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH---HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC
Confidence            4666665432    3445 599999999998753110   1123455553 59999999999887654321      345


Q ss_pred             ccceeEEEeC
Q 005744          404 ELERFRICIG  413 (679)
Q Consensus       404 ~L~~L~l~~~  413 (679)
                      +|+.|++..+
T Consensus       254 ~L~~L~L~~n  263 (362)
T 3goz_A          254 HLQTVYLDYD  263 (362)
T ss_dssp             TCSEEEEEHH
T ss_pred             CccEEEeccC
Confidence            5666666544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.58  E-value=1.5e-14  Score=138.27  Aligned_cols=148  Identities=20%  Similarity=0.283  Sum_probs=118.7

Q ss_pred             eeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc-cccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecC
Q 005744          235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKH  311 (679)
Q Consensus       235 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~  311 (679)
                      +.++++++.+. .+|..+   .++|++|++++|.++.+|. .+..+++|++|++++|.+..  +..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            56777777765 677654   2688999999999988754 78889999999999998887  67899999999999999


Q ss_pred             CCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeec
Q 005744          312 SSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHI  390 (679)
Q Consensus       312 ~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  390 (679)
                      |.++.+|.. +..+++|++|++++ +.++.+++..+..+++|++|++++|.+....       ...+..+++|+.|++++
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-------KGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-------TTTTTTCTTCCEEECCS
T ss_pred             CcCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-------HHHHhCCCCCCEEEeCC
Confidence            999988876 57899999999998 6788887777888999999999998775322       23466788888888888


Q ss_pred             CCCc
Q 005744          391 PDAQ  394 (679)
Q Consensus       391 ~~~~  394 (679)
                      |.+.
T Consensus       162 N~~~  165 (220)
T 2v9t_B          162 NPFI  165 (220)
T ss_dssp             SCEE
T ss_pred             CCcC
Confidence            7653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.57  E-value=2.5e-14  Score=155.28  Aligned_cols=167  Identities=19%  Similarity=0.207  Sum_probs=139.9

Q ss_pred             chhhhhhhhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCC
Q 005744          200 DLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL  279 (679)
Q Consensus       200 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l  279 (679)
                      .+..+|....++++.|++++|.+..+|  ..+++|++|++++|.+.+ +|. + ..  +|++|++++|.++.+|.   .+
T Consensus        70 ~L~~lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l  139 (571)
T 3cvr_A           70 NLSSLPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE-L-PA--SLKHLDVDNNQLTMLPE---LP  139 (571)
T ss_dssp             CCSCCCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC-C-CT--TCCEEECCSSCCSCCCC---CC
T ss_pred             CCCccCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch-h-hc--CCCEEECCCCcCCCCCC---cC
Confidence            344556545678999999999999999  458999999999999885 887 4 44  99999999999999988   68


Q ss_pred             cCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCC------
Q 005744          280 INLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL------  352 (679)
Q Consensus       280 ~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L------  352 (679)
                      ++|++|++++|.+.. |.   .+++|++|++++|.++.+|. +.  ++|++|++++ +.++.+|.  +..  +|      
T Consensus       140 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~-N~L~~lp~--~~~--~L~~~~~~  208 (571)
T 3cvr_A          140 ALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST-NLLESLPA--VPV--RNHHSEET  208 (571)
T ss_dssp             TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS-SCCSSCCC--CC----------C
T ss_pred             ccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC-CCCCchhh--HHH--hhhccccc
Confidence            999999999999988 55   67899999999999999998 66  8999999999 67888887  444  67      


Q ss_pred             -cEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCcc
Q 005744          353 -EELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV  395 (679)
Q Consensus       353 -~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  395 (679)
                       +.|++++|.+.        ..+..+..+++|+.|++++|.+..
T Consensus       209 L~~L~Ls~N~l~--------~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          209 EIFFRCRENRIT--------HIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             CEEEECCSSCCC--------CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             ceEEecCCCcce--------ecCHHHhcCCCCCEEEeeCCcCCC
Confidence             99999999875        334567779999999999998754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.56  E-value=3e-14  Score=136.16  Aligned_cols=148  Identities=18%  Similarity=0.215  Sum_probs=121.8

Q ss_pred             eeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC--ccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEec
Q 005744          235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP--SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLK  310 (679)
Q Consensus       235 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~  310 (679)
                      ++++++++.+. .+|..+   ...+++|++++|.++.++  ..+..+++|++|++++|.+..  +..|+++++|++|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            57888888876 678654   346789999999999874  348899999999999999888  4579999999999999


Q ss_pred             CCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEee
Q 005744          311 HSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH  389 (679)
Q Consensus       311 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  389 (679)
                      +|.++.+|.. +..+++|++|++++ +.++.+++..+..+++|++|++++|.+...       ....+..+++|+.|+++
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~L~  161 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQITTV-------APGAFDTLHSLSTLNLL  161 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCCCB-------CTTTTTTCTTCCEEECC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCCEE-------CHHHhcCCCCCCEEEec
Confidence            9999988765 88999999999999 678888766689999999999999977532       23467788899999998


Q ss_pred             cCCCc
Q 005744          390 IPDAQ  394 (679)
Q Consensus       390 ~~~~~  394 (679)
                      +|.+.
T Consensus       162 ~N~l~  166 (220)
T 2v70_A          162 ANPFN  166 (220)
T ss_dssp             SCCEE
T ss_pred             CcCCc
Confidence            88654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.54  E-value=3.3e-14  Score=136.82  Aligned_cols=139  Identities=21%  Similarity=0.287  Sum_probs=123.0

Q ss_pred             cccchhhhhhhhcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc
Q 005744          197 NVADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS  274 (679)
Q Consensus       197 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~  274 (679)
                      .+..+..+|...+.++++|++++|.+..++. .+ .+++|++|++++|.+. .+|...|..+++|++|++++|.++.+|.
T Consensus        27 ~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  105 (229)
T 3e6j_A           27 RSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPS  105 (229)
T ss_dssp             TTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCccCh
Confidence            4556677777777999999999999988754 34 8999999999999985 7777778999999999999999999865


Q ss_pred             c-ccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCc
Q 005744          275 S-LGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCS  336 (679)
Q Consensus       275 ~-i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~  336 (679)
                      . +..+++|++|++++|.+.. |..+.++++|++|++++|.++.+|. .+..+++|++|++++|.
T Consensus       106 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          106 AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             hHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            4 6899999999999999999 8999999999999999999999886 48899999999999954

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=4.3e-14  Score=129.03  Aligned_cols=138  Identities=27%  Similarity=0.250  Sum_probs=90.8

Q ss_pred             CCCccEEEeCCCcCC--cCCccccCCcCCCEEEcCCcccCCcccccCCCCCcEEEecCCCCCc-cchhhhcCCCCCEEcc
Q 005744          256 MTELRVLDLTGFRFH--SLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQ-LPREIGQLTCLKLLDL  332 (679)
Q Consensus       256 l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l  332 (679)
                      .++|++|++++|.++  .+|..+..+++|++|++++|.+.....++.+++|++|++++|.++. +|..+..+++|++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            456777777777776  6676667777777777777776666667777777777777777776 6666666777777777


Q ss_pred             cCCccccccCc-ccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCc
Q 005744          333 SNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ  398 (679)
Q Consensus       333 ~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  398 (679)
                      ++ +.++.+|. ..++.+++|++|++++|.+.....    .....+..+++|+.|+++.|....+|.
T Consensus       103 s~-N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          103 SG-NKLKDISTLEPLKKLECLKSLDLFNCEVTNLND----YRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             BS-SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT----HHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             cC-CccCcchhHHHHhcCCCCCEEEeeCCcCcchHH----HHHHHHHhCccCcEecCCCCChhhccc
Confidence            77 45666542 336777777777777776542100    001256667777777777776665554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.53  E-value=1.1e-16  Score=174.63  Aligned_cols=191  Identities=20%  Similarity=0.225  Sum_probs=139.5

Q ss_pred             cCCCeEEEccCCCcccCCccc-CCcceeeeeeccCC-------------cccCCCchhhcCCCCccEEE-eCCCcCCcCC
Q 005744          209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTEN-------------LSLQIPDPFFEGMTELRVLD-LTGFRFHSLP  273 (679)
Q Consensus       209 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~-------------~~~~~~~~~~~~l~~L~~L~-l~~~~l~~lp  273 (679)
                      .+.+++|++++|.++.+|..+ .+++|+.|++.+|.             ..+..| ..++.+++|+.|+ ++.+.+..++
T Consensus       348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~-~~l~~l~~L~~L~~l~~n~~~~L~  426 (567)
T 1dce_A          348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK-ETLQYFSTLKAVDPMRAAYLDDLR  426 (567)
T ss_dssp             TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH-HHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCH-HHHHHHHhcccCcchhhcccchhh
Confidence            456778888888888888877 78888888875543             233333 3447777788777 5554433222


Q ss_pred             c------cccC--CcCCCEEEcCCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCccc
Q 005744          274 S------SLGC--LINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNV  345 (679)
Q Consensus       274 ~------~i~~--l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~  345 (679)
                      .      .+..  ...|++|++++|.+...+.++.+++|++|++++|.++.+|..++++++|++|++++ +.++.+| . 
T Consensus       427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~-  503 (567)
T 1dce_A          427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-G-  503 (567)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-G-
T ss_pred             hhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-c-
Confidence            1      1111  12588999999988883348999999999999999999999999999999999998 6777887 3 


Q ss_pred             ccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc-----cccccceeE
Q 005744          346 ISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-----VFVELERFR  409 (679)
Q Consensus       346 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~  409 (679)
                      ++++++|++|++++|.+....      .+..+..+++|+.|++++|.+...+...     .+++|+.|+
T Consensus       504 l~~l~~L~~L~Ls~N~l~~~~------~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          504 VANLPRLQELLLCNNRLQQSA------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             GTTCSSCCEEECCSSCCCSSS------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             cCCCCCCcEEECCCCCCCCCC------CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            889999999999998775211      1467888899999999999888776654     356666654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.53  E-value=3.1e-14  Score=129.97  Aligned_cols=133  Identities=19%  Similarity=0.175  Sum_probs=93.2

Q ss_pred             hhcCCCeEEEccCCCcc--cCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCc-CCccccCCcCC
Q 005744          207 KIDEAPTAISIPFRGIY--ELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS-LPSSLGCLINL  282 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L  282 (679)
                      ..++++++|++++|.+.  .+|..+ .+++|++|++++|.+.+.   ..+..+++|++|++++|.++. +|..+.++++|
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            34567888888888876  677664 677777777777776533   234677777777777777776 56666667777


Q ss_pred             CEEEcCCcccCC-c--ccccCCCCCcEEEecCCCCCccch----hhhcCCCCCEEcccCCccccccCc
Q 005744          283 RTLSLENCLVVD-V--AIIGDLKKLEILSLKHSSIEQLPR----EIGQLTCLKLLDLSNCSKLKEIRP  343 (679)
Q Consensus       283 ~~L~L~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~l~~~~~l~~lp~  343 (679)
                      ++|++++|.+.. +  ..++.+++|++|++++|.++.+|.    .+..+++|++|++++| ...++|.
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~  164 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD  164 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence            777777777766 3  567777777777777777776665    5677777777777773 4455544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=2.7e-14  Score=127.52  Aligned_cols=12  Identities=0%  Similarity=-0.114  Sum_probs=5.2

Q ss_pred             CCeEEEccCCCc
Q 005744          211 APTAISIPFRGI  222 (679)
Q Consensus       211 ~l~~l~l~~~~~  222 (679)
                      +++++++++|.+
T Consensus        18 ~l~~L~l~~n~l   29 (149)
T 2je0_A           18 DVKELVLDNSRS   29 (149)
T ss_dssp             GCSEEECTTCBC
T ss_pred             cCeEEEccCCcC
Confidence            344444444444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.48  E-value=7.5e-14  Score=124.57  Aligned_cols=126  Identities=22%  Similarity=0.233  Sum_probs=111.6

Q ss_pred             CCcceeeeeeccCCcc-cCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC--cccccCCCCCcE
Q 005744          230 GFLKLKLFLFFTENLS-LQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEI  306 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~  306 (679)
                      ..++++.|++++|.+. +.+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.+..  |..++++++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            4578999999999987 677764 48999999999999999988 779999999999999999988  566777999999


Q ss_pred             EEecCCCCCccc--hhhhcCCCCCEEcccCCccccccCc---ccccCCCCCcEEEcc
Q 005744          307 LSLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEIRP---NVISNLTRLEELYMG  358 (679)
Q Consensus       307 L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~l~~l~~L~~L~l~  358 (679)
                      |++++|.++.+|  ..++.+++|++|++++ +.++.+|+   ..++.+++|++|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcC-CcccchHHHHHHHHHHCCCcccccCC
Confidence            999999999876  7899999999999999 57888876   558899999999875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.47  E-value=3e-13  Score=126.15  Aligned_cols=123  Identities=20%  Similarity=0.313  Sum_probs=90.1

Q ss_pred             eeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCC
Q 005744          236 LFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSS  313 (679)
Q Consensus       236 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~  313 (679)
                      +++++++.+. .+|..+   .++|++|++++|.++.+|..+.++++|++|++++|.+..  +..|.++++|++|++++|.
T Consensus        14 ~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            4455555444 455443   246778888888888777778888888888888888777  4567888888888888888


Q ss_pred             CCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccc
Q 005744          314 IEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ  363 (679)
Q Consensus       314 l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (679)
                      ++.+|. .+..+++|++|++++ +.++.+|+..+..+++|+.|++++|.+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCee
Confidence            887765 477788888888887 6677777766777888888888877553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.45  E-value=3.6e-13  Score=125.70  Aligned_cols=104  Identities=19%  Similarity=0.257  Sum_probs=52.0

Q ss_pred             CccEEEeCCCcCCcCCcc--ccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcc
Q 005744          258 ELRVLDLTGFRFHSLPSS--LGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDL  332 (679)
Q Consensus       258 ~L~~L~l~~~~l~~lp~~--i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l  332 (679)
                      +|++|++++|.++.++..  ++.+++|++|++++|.+..  |..++++++|++|++++|+++.++.. +..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            445555555555444332  4455555555555555444  34455555555555555555544432 445555555555


Q ss_pred             cCCccccccCcccccCCCCCcEEEccCCcc
Q 005744          333 SNCSKLKEIRPNVISNLTRLEELYMGNSFT  362 (679)
Q Consensus       333 ~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~  362 (679)
                      ++ +.++.+++..++.+++|++|++++|.+
T Consensus       110 ~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A          110 YD-NQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CS-SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CC-CcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            55 344444333355555555555555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.45  E-value=1.7e-13  Score=154.40  Aligned_cols=152  Identities=20%  Similarity=0.227  Sum_probs=101.9

Q ss_pred             cCCCeEEEccCCCcccCCccc-CCcceeeeee-----ccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCC
Q 005744          209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLF-----FTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINL  282 (679)
Q Consensus       209 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l-----~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L  282 (679)
                      ...++++++.++.+...+... ...+|+.+.+     ..|.+.  ++...+..++.|++|+|++|.+..+|..+.++++|
T Consensus       172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L  249 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL  249 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred             CCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence            456888999888887666543 3444444333     333332  45566789999999999999999999999999999


Q ss_pred             CEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCc
Q 005744          283 RTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF  361 (679)
Q Consensus       283 ~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~  361 (679)
                      ++|+|++|.+.. |..|++|++|++|+|++|.++.+|..|+.|++|++|+|++ +.++.+|.. |+++++|++|++++|.
T Consensus       250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE-FGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS-TTSCTTCCCEECTTSC
T ss_pred             CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC-CCCCccChh-hhcCCCccEEeCCCCc
Confidence            999999999998 8889999999999999999999999999999999999999 578899987 9999999999999998


Q ss_pred             ccc
Q 005744          362 TQW  364 (679)
Q Consensus       362 ~~~  364 (679)
                      +..
T Consensus       328 l~~  330 (727)
T 4b8c_D          328 LEK  330 (727)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.44  E-value=9.3e-14  Score=127.80  Aligned_cols=127  Identities=16%  Similarity=0.179  Sum_probs=61.8

Q ss_pred             CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-ccc-ccCCCCCcEE
Q 005744          230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAI-IGDLKKLEIL  307 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~-i~~L~~L~~L  307 (679)
                      .+++|++|++++|.+. .+|. +....++|++|++++|.++.+ ..+..+++|++|++++|.+.. |+. ++.+++|++|
T Consensus        17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            4445555555555444 2322 212222555555555555544 345555555555555555554 322 2555555555


Q ss_pred             EecCCCCCccch--hhhcCCCCCEEcccCCccccccCcc---cccCCCCCcEEEccCC
Q 005744          308 SLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPN---VISNLTRLEELYMGNS  360 (679)
Q Consensus       308 ~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~---~l~~l~~L~~L~l~~~  360 (679)
                      ++++|.++.+|.  .+..+++|++|++++ +.+..+|..   .++.+++|+.|++++|
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            555555555554  455555555555555 334444432   2444555555555444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.44  E-value=4.3e-13  Score=125.16  Aligned_cols=123  Identities=21%  Similarity=0.341  Sum_probs=108.4

Q ss_pred             eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcc
Q 005744          213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL  291 (679)
Q Consensus       213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~  291 (679)
                      +.++++++.+..+|..+. .++++|++++|.+.+..+..+|..+++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus        11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            689999999999998663 39999999999987544445679999999999999999987 7889999999999999999


Q ss_pred             cCC--cccccCCCCCcEEEecCCCCCcc-chhhhcCCCCCEEcccCCc
Q 005744          292 VVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCS  336 (679)
Q Consensus       292 ~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~  336 (679)
                      +..  +..++++++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            988  56699999999999999999966 6679999999999999954

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=3.1e-13  Score=124.29  Aligned_cols=126  Identities=17%  Similarity=0.178  Sum_probs=111.2

Q ss_pred             hcCCCeEEEccCCCcccCCcccCCc-ceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccc-cCCcCCCEE
Q 005744          208 IDEAPTAISIPFRGIYELPERLGFL-KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTL  285 (679)
Q Consensus       208 ~~~~l~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L  285 (679)
                      .+.+++.|++++|.+..++....+. +|++|++++|.+.+ ++  .+..+++|++|++++|.++.+|..+ ..+++|++|
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-LD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-EC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc-cc--ccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            4678999999999999887655554 99999999999875 32  3689999999999999999998665 899999999


Q ss_pred             EcCCcccCC-cc--cccCCCCCcEEEecCCCCCccchh----hhcCCCCCEEcccCCc
Q 005744          286 SLENCLVVD-VA--IIGDLKKLEILSLKHSSIEQLPRE----IGQLTCLKLLDLSNCS  336 (679)
Q Consensus       286 ~L~~~~~~~-~~--~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~l~~~~  336 (679)
                      ++++|.+.. +.  .++.+++|++|++++|.++.+|..    ++.+++|++|++++|.
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            999999988 55  799999999999999999999885    8999999999999853

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.40  E-value=1.9e-12  Score=120.64  Aligned_cols=121  Identities=21%  Similarity=0.321  Sum_probs=107.3

Q ss_pred             eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCcc
Q 005744          213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCL  291 (679)
Q Consensus       213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~  291 (679)
                      +.++++++.+..+|..+ .++|++|++++|.+. .+|. .|..+++|++|++++|.++.++ ..|.++++|++|++++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            57889999999998765 468999999999987 7885 4589999999999999999885 569999999999999999


Q ss_pred             cCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCc
Q 005744          292 VVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCS  336 (679)
Q Consensus       292 ~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~  336 (679)
                      +..  +..|+.+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            988  56799999999999999999999875 7889999999999853

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.38  E-value=9.2e-14  Score=156.55  Aligned_cols=130  Identities=20%  Similarity=0.255  Sum_probs=98.2

Q ss_pred             CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEE
Q 005744          230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILS  308 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~  308 (679)
                      .+++|++|++++|.+. .+|..++ .+++|++|+|++|.++.+|..|+++++|++|+|++|.+.. |..|++|.+|++|+
T Consensus       222 ~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred             cCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence            6788888888888876 7777764 7888888888888888888888888888888888888887 78888888888888


Q ss_pred             ecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCC-CCcEEEccCCcc
Q 005744          309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLT-RLEELYMGNSFT  362 (679)
Q Consensus       309 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~-~L~~L~l~~~~~  362 (679)
                      |++|.++.+|..|++|++|++|+|++ +.+...++..+..+. .+..+++.+|.+
T Consensus       300 L~~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~~~~~~l~l~~N~l  353 (727)
T 4b8c_D          300 FFDNMVTTLPWEFGNLCNLQFLGVEG-NPLEKQFLKILTEKSVTGLIFYLRDNRP  353 (727)
T ss_dssp             CCSSCCCCCCSSTTSCTTCCCEECTT-SCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCCCccChhhhcCCCccEEeCCC-CccCCCChHHHhhcchhhhHHhhccCcc
Confidence            88888888888888888888888888 455544444343321 112245555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.37  E-value=8.8e-15  Score=137.55  Aligned_cols=132  Identities=24%  Similarity=0.318  Sum_probs=85.0

Q ss_pred             hcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEc
Q 005744          253 FEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLD  331 (679)
Q Consensus       253 ~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~  331 (679)
                      +..+++|++|++++|.++.+| .+.++++|++|++++|.+.. |..++.+++|++|++++|.++.+| .++.+++|++|+
T Consensus        44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY  121 (198)
T ss_dssp             HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred             HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence            366777777777777777777 67777777777777777766 666666677777777777777766 577777777777


Q ss_pred             ccCCccccccCc-ccccCCCCCcEEEccCCcccceeccC---CcCChhhhhcCCCCceEE
Q 005744          332 LSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQ---SNASLGELKQLSRLTTLE  387 (679)
Q Consensus       332 l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~l~~l~~L~~L~  387 (679)
                      +++ +.++.++. ..+..+++|++|++++|.+....+..   .......+..+++|+.|+
T Consensus       122 l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          122 MSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCC-CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            777 45665543 33667777777777777554221100   000112256666777665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.36  E-value=4.7e-12  Score=116.48  Aligned_cols=106  Identities=27%  Similarity=0.433  Sum_probs=61.3

Q ss_pred             CCccEEEeCCCcCCcCCc-cccCCcCCCEEEcCCcccCC-c-ccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcc
Q 005744          257 TELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDL  332 (679)
Q Consensus       257 ~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l  332 (679)
                      ++|++|++++|.++.+|. .++.+++|++|++++|.+.. + ..++.+++|++|++++|.++.+|.. +..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            455555666555555543 24555566666666665555 2 3345666666666666666655543 456666666666


Q ss_pred             cCCccccccCcccccCCCCCcEEEccCCccc
Q 005744          333 SNCSKLKEIRPNVISNLTRLEELYMGNSFTQ  363 (679)
Q Consensus       333 ~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (679)
                      ++ +.++.+|+..+..+++|++|++++|.+.
T Consensus       108 ~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          108 DT-NQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CS-SCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cC-CcceEeCHHHhcCCcccCEEEecCCCee
Confidence            66 4555666554556666666666666543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.35  E-value=6.3e-12  Score=115.59  Aligned_cols=122  Identities=22%  Similarity=0.347  Sum_probs=86.3

Q ss_pred             CeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCcc-ccCCcCCCEEEcCCc
Q 005744          212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENC  290 (679)
Q Consensus       212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~L~~~  290 (679)
                      .+.++++++.+..+|..+ .++|++|++++|.+. .++...|..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCC-CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            356777777777776543 367777777777765 45555567777788888877777776543 577777888888777


Q ss_pred             ccCC-c-ccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCC
Q 005744          291 LVVD-V-AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNC  335 (679)
Q Consensus       291 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~  335 (679)
                      .+.. + ..++.+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            7777 3 3467777788888877777777765 366777777777774

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.33  E-value=5.5e-12  Score=137.62  Aligned_cols=182  Identities=17%  Similarity=0.137  Sum_probs=134.9

Q ss_pred             cchhhhhh--hhcCCCeEEEccCCC-------------c-ccCCccc-CCcceeeee-eccCCcccCCCchh-----hc-
Q 005744          199 ADLKEELD--KIDEAPTAISIPFRG-------------I-YELPERL-GFLKLKLFL-FFTENLSLQIPDPF-----FE-  254 (679)
Q Consensus       199 ~~~~~~~~--~~~~~l~~l~l~~~~-------------~-~~l~~~~-~~~~L~~L~-l~~~~~~~~~~~~~-----~~-  254 (679)
                      +.+..+|.  ..+.+++.|++++|.             . ...|..+ .+++|+.|+ ++.|.+. .++.-.     +. 
T Consensus       359 n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~L~~l~l~~n~i~~  437 (567)
T 1dce_A          359 EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-DLRSKFLLENSVLK  437 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHHHHH
T ss_pred             hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-hhhhhhhhcccccc
Confidence            34556665  566778888886653             1 2233333 677788877 4433211 111100     00 


Q ss_pred             -CCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcc
Q 005744          255 -GMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDL  332 (679)
Q Consensus       255 -~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l  332 (679)
                       ....|++|++++|.++.+|. ++.+++|++|++++|.+.. |..++++++|++|++++|.++.+| .++++++|++|++
T Consensus       438 l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          438 MEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL  515 (567)
T ss_dssp             HHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred             cCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence             11358999999999999997 9999999999999999999 899999999999999999999999 8999999999999


Q ss_pred             cCCccccccC-cccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEe
Q 005744          333 SNCSKLKEIR-PNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV  388 (679)
Q Consensus       333 ~~~~~l~~lp-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  388 (679)
                      ++ +.++.++ +..++.+++|++|++++|.+....+    ....-+..+++|+.|++
T Consensus       516 s~-N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~----~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          516 CN-NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG----IQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CS-SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS----CTTHHHHHCTTCSEEEC
T ss_pred             CC-CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc----HHHHHHHHCcccCccCC
Confidence            99 6788884 4449999999999999998764321    22233455888888753

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.26  E-value=1.1e-13  Score=129.94  Aligned_cols=142  Identities=20%  Similarity=0.213  Sum_probs=115.8

Q ss_pred             CCeEEEccCC--CcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEc
Q 005744          211 APTAISIPFR--GIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL  287 (679)
Q Consensus       211 ~l~~l~l~~~--~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L  287 (679)
                      .++...+.+.  .++.+|..+ .+++|++|++++|.+.+ +|  .+..+++|++|++++|.++.+|..+..+++|++|++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L  100 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence            3444555443  445555555 89999999999998874 77  358899999999999999999998888899999999


Q ss_pred             CCcccCCcccccCCCCCcEEEecCCCCCccch--hhhcCCCCCEEcccCCccccccCc----------ccccCCCCCcEE
Q 005744          288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRP----------NVISNLTRLEEL  355 (679)
Q Consensus       288 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~----------~~l~~l~~L~~L  355 (679)
                      ++|.+...+.++++++|++|++++|.++.+|.  .+..+++|++|++++| .+...++          ..+..+++|+.|
T Consensus       101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~L  179 (198)
T 1ds9_A          101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKL  179 (198)
T ss_dssp             EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred             cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEE
Confidence            99999984479999999999999999998875  7899999999999995 4443322          236789999999


Q ss_pred             E
Q 005744          356 Y  356 (679)
Q Consensus       356 ~  356 (679)
                      +
T Consensus       180 d  180 (198)
T 1ds9_A          180 D  180 (198)
T ss_dssp             C
T ss_pred             C
Confidence            7

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.25  E-value=3.2e-11  Score=110.25  Aligned_cols=101  Identities=24%  Similarity=0.403  Sum_probs=77.5

Q ss_pred             cEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCc
Q 005744          260 RVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCS  336 (679)
Q Consensus       260 ~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~  336 (679)
                      +.++++++.++.+|..+.  .+|++|++++|.+..  +..++++++|++|++++|+++.+|.. +.++++|++|++++ +
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-N   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-C
Confidence            677888888877777664  778888888888777  45677888888888888888877765 46788888888887 6


Q ss_pred             cccccCcccccCCCCCcEEEccCCccc
Q 005744          337 KLKEIRPNVISNLTRLEELYMGNSFTQ  363 (679)
Q Consensus       337 ~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (679)
                      .++.+|+..++.+++|++|++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            777777766777888888888877654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.25  E-value=3.3e-11  Score=109.71  Aligned_cols=102  Identities=24%  Similarity=0.359  Sum_probs=81.1

Q ss_pred             ccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCC
Q 005744          259 LRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNC  335 (679)
Q Consensus       259 L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~  335 (679)
                      .++++++++.++.+|..+.  .+|++|++++|.+..  +..++++++|++|++++|+++.+|.. +..+++|++|++++ 
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-   87 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-
Confidence            4678888888888887664  778888888888877  56688888888888888888888775 47888888888888 


Q ss_pred             ccccccCcccccCCCCCcEEEccCCccc
Q 005744          336 SKLKEIRPNVISNLTRLEELYMGNSFTQ  363 (679)
Q Consensus       336 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (679)
                      +.++.+|+..+..+++|++|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            6778887776788888888888888654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.21  E-value=5.9e-11  Score=108.45  Aligned_cols=103  Identities=14%  Similarity=0.227  Sum_probs=47.4

Q ss_pred             eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCcc-ccCCcCCCEEEcCCcc
Q 005744          213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENCL  291 (679)
Q Consensus       213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~L~~~~  291 (679)
                      +.++++++.+..+|..+. ++|++|++++|.+.+ +++..|.++++|++|++++|.++.+|.. +.++++|++|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccc-cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            445555555555554332 445555555554442 2222234455555555555555444433 2444444444444444


Q ss_pred             cCC-cc-cccCCCCCcEEEecCCCCCcc
Q 005744          292 VVD-VA-IIGDLKKLEILSLKHSSIEQL  317 (679)
Q Consensus       292 ~~~-~~-~i~~L~~L~~L~l~~~~l~~l  317 (679)
                      +.. +. .+..+++|++|++++|.+...
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcccc
Confidence            444 22 244444444444444444433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.16  E-value=8.5e-11  Score=119.79  Aligned_cols=79  Identities=16%  Similarity=0.211  Sum_probs=46.0

Q ss_pred             cCCCeEEEccCCCcc--------------------cCCccc--C--------CcceeeeeeccCCcccCCCchhhcCCCC
Q 005744          209 DEAPTAISIPFRGIY--------------------ELPERL--G--------FLKLKLFLFFTENLSLQIPDPFFEGMTE  258 (679)
Q Consensus       209 ~~~l~~l~l~~~~~~--------------------~l~~~~--~--------~~~L~~L~l~~~~~~~~~~~~~~~~l~~  258 (679)
                      ..+++.|++++|.+.                    .+|...  +        +++|+.+.+.. .+. .+++..|.++++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~  125 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDN  125 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcc
Confidence            678999999998886                    222222  4        56666666655 333 455555666666


Q ss_pred             ccEEEeCCCcCCcC-CccccCCcCCCEEEcCC
Q 005744          259 LRVLDLTGFRFHSL-PSSLGCLINLRTLSLEN  289 (679)
Q Consensus       259 L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~  289 (679)
                      |+.|++++|.+..+ +..|..+.++.++....
T Consensus       126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~  157 (329)
T 3sb4_A          126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGS  157 (329)
T ss_dssp             CCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred             cceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence            66666666665554 33455555555554433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.15  E-value=7.4e-11  Score=120.22  Aligned_cols=122  Identities=11%  Similarity=0.138  Sum_probs=61.4

Q ss_pred             CcceeeeeeccCCcccCCCchhhcC-CCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCCcccccC--------C
Q 005744          231 FLKLKLFLFFTENLSLQIPDPFFEG-MTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGD--------L  301 (679)
Q Consensus       231 ~~~L~~L~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~--------L  301 (679)
                      +.+++.|.++++-....+ .. +.. +++|++|||++|.+......-+.++.++++.+..+.+. ...|.+        +
T Consensus        24 ~~~l~~L~l~g~i~~~~~-~~-l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~-~~aF~~~~~~~~~g~  100 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDF-RH-LRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP-AYAFSNVVNGVTKGK  100 (329)
T ss_dssp             HHHCSEEEEEEEECHHHH-HH-HHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC-TTTTEEEETTEEEEC
T ss_pred             hCceeEEEEeccccHHHH-HH-HHHhhccCeEEecCcceeEEecCccccccccccccccccccC-HHHhccccccccccc
Confidence            456666776653111000 11 222 56677777777776621111112222444444444221 233444        6


Q ss_pred             CCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEc
Q 005744          302 KKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM  357 (679)
Q Consensus       302 ~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l  357 (679)
                      .+|+.|++.. .++.++.. |..+++|+.|++.+ +.+..+++..|....++..+..
T Consensus       101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~  155 (329)
T 3sb4_A          101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRK-KTAPNLLPEALADSVTAIFIPL  155 (329)
T ss_dssp             TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCC-SSCCEECTTSSCTTTCEEEECT
T ss_pred             CCCcEEECCc-cccchhHHHhhcCcccceEEcCC-CCccccchhhhcCCCceEEecC
Confidence            6666666666 66666543 56666666666666 4555566555555555554443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.15  E-value=1.5e-10  Score=105.37  Aligned_cols=101  Identities=19%  Similarity=0.336  Sum_probs=46.0

Q ss_pred             eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCcc-ccCCcCCCEEEcCCcc
Q 005744          213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENCL  291 (679)
Q Consensus       213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~L~~~~  291 (679)
                      +.++++++.+..+|..+ .++|++|++++|.+.+ ++...|.++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus        12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCc-cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            45555555555555433 2444455555444442 2222234444555555555544444332 3444444444444444


Q ss_pred             cCC-c-ccccCCCCCcEEEecCCCCC
Q 005744          292 VVD-V-AIIGDLKKLEILSLKHSSIE  315 (679)
Q Consensus       292 ~~~-~-~~i~~L~~L~~L~l~~~~l~  315 (679)
                      +.. + ..+.++++|++|++++|.+.
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            444 2 22444444444444444433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.94  E-value=5.1e-08  Score=101.43  Aligned_cols=122  Identities=14%  Similarity=0.156  Sum_probs=87.9

Q ss_pred             CcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCcccCC--cccccCCCCCcEE
Q 005744          231 FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEIL  307 (679)
Q Consensus       231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L  307 (679)
                      +..++.+.+..+ + ..++...|.+. +|+.+.+..+ ++.++ .+|.+ .+|+.+.+.. .+..  ...|.++.+|+.+
T Consensus       112 ~~~l~~i~ip~~-i-~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPNS-V-KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCTT-C-CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             cCCccEEEECCc-c-CEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence            345555555432 2 25566666765 6888888766 66664 44555 4688888876 4444  5678888899999


Q ss_pred             EecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCC
Q 005744          308 SLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS  360 (679)
Q Consensus       308 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~  360 (679)
                      ++.+|+++.+|...-...+|+.+.+..  .++.++...|..+++|+.+.+..+
T Consensus       186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~  236 (401)
T 4fdw_A          186 DLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN  236 (401)
T ss_dssp             ECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT
T ss_pred             ecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC
Confidence            998888888887755578888888874  478888877888888888888654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.88  E-value=4.6e-09  Score=107.78  Aligned_cols=99  Identities=23%  Similarity=0.225  Sum_probs=61.3

Q ss_pred             EEeCCC-cCCcCCccccCCcCCCEEEcCC-cccCC--cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCc
Q 005744          262 LDLTGF-RFHSLPSSLGCLINLRTLSLEN-CLVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCS  336 (679)
Q Consensus       262 L~l~~~-~l~~lp~~i~~l~~L~~L~L~~-~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~  336 (679)
                      ++++++ .++.+|. +..+.+|++|+|++ |.+..  +..|++|.+|++|+|++|+++.+|. .|++|++|++|+|++ +
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N   90 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-N   90 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-S
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-C
Confidence            455665 5666666 66666666666664 66655  2456666666666666666665544 356666666666666 5


Q ss_pred             cccccCcccccCCCCCcEEEccCCccc
Q 005744          337 KLKEIRPNVISNLTRLEELYMGNSFTQ  363 (679)
Q Consensus       337 ~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (679)
                      .++.+|+..+..++ |+.|++.+|.+.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            56666665444444 667776666543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.85  E-value=4.7e-08  Score=101.68  Aligned_cols=256  Identities=11%  Similarity=0.134  Sum_probs=157.3

Q ss_pred             CCCeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEc
Q 005744          210 EAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSL  287 (679)
Q Consensus       210 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L  287 (679)
                      ..+..+.+.. .+..++... .-.+|+.+.+..+ + ..++...|.+. +|+.+.+.+ .++.++ ..|.+|.+|+.+++
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i-~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-L-KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-C-CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-c-cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            4555555543 344444433 2346888887655 3 35666667774 688888886 566664 56888888899988


Q ss_pred             CCcccCC-cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccce
Q 005744          288 ENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK  365 (679)
Q Consensus       288 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~  365 (679)
                      .+|.+.. +...-...+|+.+.+.. .++.++. .+.++++|+.+.+..  .++.++...|.+ .+|+.+.+..+ +.. 
T Consensus       188 ~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~-i~~-  261 (401)
T 4fdw_A          188 SKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNG-VTN-  261 (401)
T ss_dssp             TTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETT-CCE-
T ss_pred             CCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCC-ccE-
Confidence            8888777 43333357888888874 4776665 477888888888875  467777777777 78888887543 211 


Q ss_pred             eccCCcCChhhhhcCCCCceEEeecCCCc-----cCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceech
Q 005744          366 VEGQSNASLGELKQLSRLTTLEVHIPDAQ-----VMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGY  440 (679)
Q Consensus       366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~  440 (679)
                            .....+.++++|+.+.+..+...     .++..                  .+..+.+|+.+.|. +....++.
T Consensus       262 ------I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~------------------aF~~c~~L~~l~l~-~~i~~I~~  316 (401)
T 4fdw_A          262 ------IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY------------------CLEGCPKLARFEIP-ESIRILGQ  316 (401)
T ss_dssp             ------ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT------------------TTTTCTTCCEECCC-TTCCEECT
T ss_pred             ------EChhHhhCCCCCCEEEeCCccccCCcccEECHH------------------HhhCCccCCeEEeC-CceEEEhh
Confidence                  12245677888888888766543     22222                  23344445555554 22334444


Q ss_pred             hHHHHhhcccccccccccCccccc-ccccchhhccccceEeeecCCCeeEEEeCCCcccccc-ccceeeccc
Q 005744          441 GMKMLLKRTEDLHLDELAGFKNVV-HELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFP-LLESLFLHN  510 (679)
Q Consensus       441 ~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~L~~L~l~~  510 (679)
                      ..+..+.+|+.+.+..+  +..+. ..|   .++ +|+.+.+.++.- ..+..  ..+.+++ .++.|++-.
T Consensus       317 ~aF~~c~~L~~l~lp~~--l~~I~~~aF---~~~-~L~~l~l~~n~~-~~l~~--~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          317 GLLGGNRKVTQLTIPAN--VTQINFSAF---NNT-GIKEVKVEGTTP-PQVFE--KVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             TTTTTCCSCCEEEECTT--CCEECTTSS---SSS-CCCEEEECCSSC-CBCCC--SSCCCSCTTCCEEEECG
T ss_pred             hhhcCCCCccEEEECcc--ccEEcHHhC---CCC-CCCEEEEcCCCC-ccccc--ccccCCCCCccEEEeCH
Confidence            44444667777777543  34443 334   566 888888887742 22221  2223453 677777765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.84  E-value=3.8e-10  Score=116.36  Aligned_cols=156  Identities=14%  Similarity=0.057  Sum_probs=96.6

Q ss_pred             hhcCCCeEEEccCCCcccCC-----ccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-----Cc
Q 005744          207 KIDEAPTAISIPFRGIYELP-----ERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-----PS  274 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~l~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-----p~  274 (679)
                      ...+.++.+++++|.+....     ..+  ..++|++|++++|.+.......+...+++|++|++++|.++..     ..
T Consensus        69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            45678899999999885422     222  2368888888888765433334444566788888888877632     22


Q ss_pred             cc-cCCcCCCEEEcCCcccCC------cccccCCCCCcEEEecCCCCCc-----cchhhhcCCCCCEEcccCCccccccC
Q 005744          275 SL-GCLINLRTLSLENCLVVD------VAIIGDLKKLEILSLKHSSIEQ-----LPREIGQLTCLKLLDLSNCSKLKEIR  342 (679)
Q Consensus       275 ~i-~~l~~L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~lp  342 (679)
                      .+ ...++|++|+|++|.+..      ...+...++|++|+|++|.++.     ++..+...++|++|++++| .++...
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g  227 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTA  227 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHH
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHH
Confidence            22 245678888888887654      2334567777777777777662     3445566667777777773 444322


Q ss_pred             cc----cccCCCCCcEEEccCCccc
Q 005744          343 PN----VISNLTRLEELYMGNSFTQ  363 (679)
Q Consensus       343 ~~----~l~~l~~L~~L~l~~~~~~  363 (679)
                      ..    .+...++|++|++++|.+.
T Consensus       228 ~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          228 ALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHHHhCCCCCEEeccCCCCC
Confidence            11    1334566777777776553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.82  E-value=3.9e-10  Score=116.30  Aligned_cols=161  Identities=14%  Similarity=0.132  Sum_probs=115.1

Q ss_pred             CcceeeeeeccCCcccCCCchh---hc-CCCCccEEEeCCCcCCc--CCccccCCcCCCEEEcCCcccCC--cccc----
Q 005744          231 FLKLKLFLFFTENLSLQIPDPF---FE-GMTELRVLDLTGFRFHS--LPSSLGCLINLRTLSLENCLVVD--VAII----  298 (679)
Q Consensus       231 ~~~L~~L~l~~~~~~~~~~~~~---~~-~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~L~~~~~~~--~~~i----  298 (679)
                      .++|+.|++++|.+.......+   +. ..++|++|+|++|.++.  +..-...+.+|++|+|++|.+.+  ...+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            5679999999998764222221   12 33799999999999863  22223356789999999999876  3333    


Q ss_pred             -cCCCCCcEEEecCCCCCc-----cchhhhcCCCCCEEcccCCccccccC----cccccCCCCCcEEEccCCcccceecc
Q 005744          299 -GDLKKLEILSLKHSSIEQ-----LPREIGQLTCLKLLDLSNCSKLKEIR----PNVISNLTRLEELYMGNSFTQWKVEG  368 (679)
Q Consensus       299 -~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~lp----~~~l~~l~~L~~L~l~~~~~~~~~~~  368 (679)
                       ....+|++|++++|.++.     ++..+..+++|++|++++| .++...    ...+...++|++|++++|.+....  
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g--  227 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA--  227 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH--
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH--
Confidence             346889999999999874     5666788999999999994 465432    223667789999999999774211  


Q ss_pred             CCcCChhhhhcCCCCceEEeecCCCcc
Q 005744          369 QSNASLGELKQLSRLTTLEVHIPDAQV  395 (679)
Q Consensus       369 ~~~~~~~~l~~l~~L~~L~l~~~~~~~  395 (679)
                       .......+...++|+.|++++|.+..
T Consensus       228 -~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          228 -ALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             -HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             -HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence             01233456678899999999997754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.77  E-value=1.4e-08  Score=104.08  Aligned_cols=86  Identities=22%  Similarity=0.196  Sum_probs=47.1

Q ss_pred             CCCchhhcCCCCccEEEeCC-CcCCcCC-ccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchhhh
Q 005744          247 QIPDPFFEGMTELRVLDLTG-FRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPREIG  322 (679)
Q Consensus       247 ~~~~~~~~~l~~L~~L~l~~-~~l~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~i~  322 (679)
                      .+|.  +..+++|++|+|++ |.++.+| ..|+++.+|++|+|++|.+..  +..|++|++|++|+|++|+++.+|..+.
T Consensus        23 ~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  100 (347)
T 2ifg_A           23 SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV  100 (347)
T ss_dssp             TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred             ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence            3454  35555556666654 5555554 345555666666666665555  3345556666666666666665555433


Q ss_pred             cCCCCCEEcccC
Q 005744          323 QLTCLKLLDLSN  334 (679)
Q Consensus       323 ~L~~L~~L~l~~  334 (679)
                      ....|++|++.+
T Consensus       101 ~~~~L~~l~l~~  112 (347)
T 2ifg_A          101 QGLSLQELVLSG  112 (347)
T ss_dssp             CSCCCCEEECCS
T ss_pred             ccCCceEEEeeC
Confidence            333366666655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.66  E-value=9e-07  Score=92.29  Aligned_cols=299  Identities=13%  Similarity=0.112  Sum_probs=135.3

Q ss_pred             CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCcccCC-cccccCCCCCcEE
Q 005744          230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEIL  307 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L  307 (679)
                      ++.+|+.+.+..+ + ..+.+..|.++.+|+.+++..+ ++.++ ..+.++..|+.+.+..+-..- ...|.+...+...
T Consensus        69 ~c~~L~~i~lp~~-i-~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~  145 (394)
T 4fs7_A           69 GCRKVTEIKIPST-V-REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEIT  145 (394)
T ss_dssp             TCTTEEEEECCTT-C-CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEE
T ss_pred             CCCCceEEEeCCC-c-cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccc
Confidence            5667777776532 2 2455566677777777777643 45442 345566666665554331111 2333333322222


Q ss_pred             EecCCCCCccc-hhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceE
Q 005744          308 SLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTL  386 (679)
Q Consensus       308 ~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  386 (679)
                      ...  .+..+. ..+.++.+|+.+.+.+  .+..++...+..+.+|+.+.+..+-.  ..      .-..+.+...|+.+
T Consensus       146 ~~~--~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~~~--~I------~~~~F~~~~~L~~i  213 (394)
T 4fs7_A          146 IPE--GVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRNLK--II------RDYCFAECILLENM  213 (394)
T ss_dssp             CCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTTCC--EE------CTTTTTTCTTCCBC
T ss_pred             cCc--cccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCCce--Ee------Cchhhcccccccee
Confidence            111  122221 2355666666666653  34455555566666666666544311  11      01223344444444


Q ss_pred             EeecCCCccCCcc-ccccccceeEEEeCC---cccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCccc
Q 005744          387 EVHIPDAQVMPQD-LVFVELERFRICIGD---VWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKN  462 (679)
Q Consensus       387 ~l~~~~~~~~~~~-~~~~~L~~L~l~~~~---~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  462 (679)
                      .+..+... +... ....+|+.+.+....   ....+..+..++.+.+..+. ..+..........++.+......   .
T Consensus       214 ~~~~~~~~-i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~---i  288 (394)
T 4fs7_A          214 EFPNSLYY-LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI---V  288 (394)
T ss_dssp             CCCTTCCE-ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE---E
T ss_pred             ecCCCceE-eehhhcccCCCceEEECCCceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCcee---e
Confidence            44322111 1111 123344544442111   01123344555555554321 12222222223334433332211   1


Q ss_pred             ccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecC
Q 005744          463 VVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGC  542 (679)
Q Consensus       463 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c  542 (679)
                      ....+   ..+.+|+.+.+.++  ++.+..  ..+..+.+|+.+.|.+  +++.+....+.      .+.+|+.+.+.. 
T Consensus       289 ~~~~F---~~~~~L~~i~l~~~--i~~I~~--~aF~~c~~L~~i~lp~--~v~~I~~~aF~------~c~~L~~i~lp~-  352 (394)
T 4fs7_A          289 PEKTF---YGCSSLTEVKLLDS--VKFIGE--EAFESCTSLVSIDLPY--LVEEIGKRSFR------GCTSLSNINFPL-  352 (394)
T ss_dssp             CTTTT---TTCTTCCEEEECTT--CCEECT--TTTTTCTTCCEECCCT--TCCEECTTTTT------TCTTCCEECCCT-
T ss_pred             ccccc---cccccccccccccc--cceech--hhhcCCCCCCEEEeCC--cccEEhHHhcc------CCCCCCEEEECc-
Confidence            11122   45666777666532  444432  2334556677776643  35555443332      556677776643 


Q ss_pred             CCccccccHHHHHHhhcCcEEEEc
Q 005744          543 HRVKHLFPFSLVKNLLQLQKVKVT  566 (679)
Q Consensus       543 ~~L~~l~~~~~~~~l~~L~~L~i~  566 (679)
                       .++.+. ...+.+|++|+.+++.
T Consensus       353 -~l~~I~-~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          353 -SLRKIG-ANAFQGCINLKKVELP  374 (394)
T ss_dssp             -TCCEEC-TTTBTTCTTCCEEEEE
T ss_pred             -cccEeh-HHHhhCCCCCCEEEEC
Confidence             355553 2345566677777664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.58  E-value=7.9e-07  Score=92.70  Aligned_cols=298  Identities=16%  Similarity=0.098  Sum_probs=187.1

Q ss_pred             hhcCCCeEEEccCCCcccCCccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCC
Q 005744          207 KIDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLR  283 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~  283 (679)
                      ....+++.+.+.. .+..+....  ++++|+.+.+..+ + ..++...|.++..|+.+.+..+ +..+ ...+.++..+.
T Consensus        68 ~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~  143 (394)
T 4fs7_A           68 QGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-V-KMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE  143 (394)
T ss_dssp             TTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred             hCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-c-eEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence            3457788898864 466676543  7899999999754 2 3677777899999998877654 4444 34455665444


Q ss_pred             EEEcCCcccCCcccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcc
Q 005744          284 TLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT  362 (679)
Q Consensus       284 ~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~  362 (679)
                      ..............|.++.+|+.+.+..+ +..++. .+..+.+|+.+.+..  .++.++...+.+...|+.+.+..+..
T Consensus       144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~~~~  220 (394)
T 4fs7_A          144 ITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPNSLY  220 (394)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred             cccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC--CceEeCchhhccccccceeecCCCce
Confidence            44444333333567888899999998764 455554 467888999988875  36777777788888888887665432


Q ss_pred             cceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEEEeCCc---ccCCCCCCCcceEEecCCCcce
Q 005744          363 QWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDV---WSWSDGYETSKTLKLQLNNSTY  437 (679)
Q Consensus       363 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~---~~~~~~~~~l~~L~L~~~~~~~  437 (679)
                      .  ..       ........|+.+.+... ...+....  ....|+.+.+.....   ...+..+..++.......   .
T Consensus       221 ~--i~-------~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~---~  287 (394)
T 4fs7_A          221 Y--LG-------DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSV---I  287 (394)
T ss_dssp             E--EC-------TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSS---E
T ss_pred             E--ee-------hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCce---e
Confidence            1  11       11122346666666422 22333222  456666666643321   123455666666655432   2


Q ss_pred             echhHHHHhhcccccccccccCcccccc-cccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccc
Q 005744          438 LGYGMKMLLKRTEDLHLDELAGFKNVVH-ELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEK  516 (679)
Q Consensus       438 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~  516 (679)
                      .+......+.+|+.+.+.+.  ++.++. .|   .++.+|+.+.+..  .++.+..  ..+.++.+|+.+.+..  +++.
T Consensus       288 i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF---~~c~~L~~i~lp~--~v~~I~~--~aF~~c~~L~~i~lp~--~l~~  356 (394)
T 4fs7_A          288 VPEKTFYGCSSLTEVKLLDS--VKFIGEEAF---ESCTSLVSIDLPY--LVEEIGK--RSFRGCTSLSNINFPL--SLRK  356 (394)
T ss_dssp             ECTTTTTTCTTCCEEEECTT--CCEECTTTT---TTCTTCCEECCCT--TCCEECT--TTTTTCTTCCEECCCT--TCCE
T ss_pred             eccccccccccccccccccc--cceechhhh---cCCCCCCEEEeCC--cccEEhH--HhccCCCCCCEEEECc--cccE
Confidence            34333434677888887643  444443 34   6788999999864  3666643  3446778899998864  4777


Q ss_pred             cccCcccCCCCccccCCccEEEEec
Q 005744          517 VCDGKVRLNEDDKSFSNLRIIKVEG  541 (679)
Q Consensus       517 ~~~~~~~~~~~~~~l~~L~~L~l~~  541 (679)
                      +....+.      .+++|+.+++..
T Consensus       357 I~~~aF~------~C~~L~~i~lp~  375 (394)
T 4fs7_A          357 IGANAFQ------GCINLKKVELPK  375 (394)
T ss_dssp             ECTTTBT------TCTTCCEEEEEG
T ss_pred             ehHHHhh------CCCCCCEEEECC
Confidence            7655544      678899998864

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.51  E-value=1.3e-07  Score=84.59  Aligned_cols=90  Identities=13%  Similarity=0.204  Sum_probs=61.4

Q ss_pred             ccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHH----hhcCcEEEEcccccchhhhcc
Q 005744          502 LLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKN----LLQLQKVKVTDCTNLKLIVGK  577 (679)
Q Consensus       502 ~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~----l~~L~~L~i~~c~~L~~l~~~  577 (679)
                      .|+.|++++|. +++..-..      ...+++|++|++++|..+++- ....+..    .++|++|+|++|+++++-...
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~------L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDH------MEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGG------GTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             eEeEEeCcCCC-ccHHHHHH------hcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            46666666664 44322111      346788999999999888775 2223333    357999999999888765432


Q ss_pred             ccccccCCCCccccccccccceeeccCCCCcccc
Q 005744          578 ESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSS  611 (679)
Q Consensus       578 ~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l  611 (679)
                                  .+..+++|++|+|++||++++.
T Consensus       134 ------------~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          134 ------------ALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             ------------HGGGCTTCCEEEEESCTTCCCH
T ss_pred             ------------HHhcCCCCCEEECCCCCCCCch
Confidence                        4557899999999999988863

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.31  E-value=3.3e-07  Score=93.52  Aligned_cols=159  Identities=17%  Similarity=0.172  Sum_probs=84.8

Q ss_pred             CCcceeeeeeccCCcc--------cCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC--ccccc
Q 005744          230 GFLKLKLFLFFTENLS--------LQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIG  299 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~--------~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~  299 (679)
                      .+++|+.|.+......        ..-...++..+++|+.|+++++.-..++. +. +++|++|++..|.+..  ...++
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHH
Confidence            4667777777543211        00122445677788888887764234444 33 6778888887776654  33343


Q ss_pred             --CCCCCcEEEecCC--C------CCccchhh--hcCCCCCEEcccCCccccccCccc--ccCCCCCcEEEccCCcccce
Q 005744          300 --DLKKLEILSLKHS--S------IEQLPREI--GQLTCLKLLDLSNCSKLKEIRPNV--ISNLTRLEELYMGNSFTQWK  365 (679)
Q Consensus       300 --~L~~L~~L~l~~~--~------l~~lp~~i--~~L~~L~~L~l~~~~~l~~lp~~~--l~~l~~L~~L~l~~~~~~~~  365 (679)
                        .+++|++|+|+.+  .      +..+...+  ..+++|++|++.+|......+...  ...+++|++|+++.|.+...
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~  294 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE  294 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence              6777888877531  1      22222222  246777777777643221111110  12466777777777654321


Q ss_pred             eccCCcCChhhhhcCCCCceEEeecCCC
Q 005744          366 VEGQSNASLGELKQLSRLTTLEVHIPDA  393 (679)
Q Consensus       366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~  393 (679)
                      .   .......+.++++|+.|+++.|.+
T Consensus       295 G---~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          295 G---ARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             H---HHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             H---HHHHHhhcccCCcceEEECCCCcC
Confidence            0   001122345566777777776643

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.16  E-value=9.4e-07  Score=78.99  Aligned_cols=84  Identities=19%  Similarity=0.260  Sum_probs=54.9

Q ss_pred             CCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcc-cCC--cccccCC----CCCcEEEecCC-CCCcc-chhhhcCCC
Q 005744          257 TELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL-VVD--VAIIGDL----KKLEILSLKHS-SIEQL-PREIGQLTC  326 (679)
Q Consensus       257 ~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~-~~~--~~~i~~L----~~L~~L~l~~~-~l~~l-p~~i~~L~~  326 (679)
                      ..|+.||++++.++.. -..+..+++|++|+|++|. +++  ...++.+    ++|++|++++| +|+.- -..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            4688888888877632 2346677888888888885 443  4555554    35777777777 56621 123556777


Q ss_pred             CCEEcccCCccccc
Q 005744          327 LKLLDLSNCSKLKE  340 (679)
Q Consensus       327 L~~L~l~~~~~l~~  340 (679)
                      |++|++++|..+++
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            77777777766655

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.16  E-value=0.00012  Score=76.02  Aligned_cols=120  Identities=11%  Similarity=0.190  Sum_probs=63.4

Q ss_pred             ceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCc---CCcCC-ccccCCcCCCEEEcCCcccCC--cccccCCCCCcE
Q 005744          233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR---FHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEI  306 (679)
Q Consensus       233 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---l~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~  306 (679)
                      .|+.+.+..+ + ..+....|.++.+|+.+.+..+.   ++.+. .+|..+.+|+.+.+..+ +..  ...+..+.+|+.
T Consensus        65 ~L~sI~iP~s-v-t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~  141 (394)
T 4gt6_A           65 VLTSVQIPDT-V-TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT  141 (394)
T ss_dssp             CCCEEEECTT-C-CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred             cCEEEEECCC-e-eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence            3666666432 2 24555556667777777766542   44442 34556666666555443 222  345566666666


Q ss_pred             EEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccC
Q 005744          307 LSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN  359 (679)
Q Consensus       307 L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~  359 (679)
                      +.+..+ +..++. .+..+.+|+.+.+..  .++.+....+.. .+|+.+.+..
T Consensus       142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~-~~l~~i~ip~  191 (394)
T 4gt6_A          142 VTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG-TALTQIHIPA  191 (394)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CCCSEEEECT
T ss_pred             ccccce-eeeecccceecccccccccccc--eeeEeccccccc-cceeEEEECC
Confidence            666532 333332 355566666666654  345555444433 4566665543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.07  E-value=1.5e-06  Score=79.89  Aligned_cols=80  Identities=15%  Similarity=0.169  Sum_probs=43.2

Q ss_pred             hcCCCCccEEEeCCC-cCC-----cCCccccCCcCCCEEEcCCcccCC--c----ccccCCCCCcEEEecCCCCCc----
Q 005744          253 FEGMTELRVLDLTGF-RFH-----SLPSSLGCLINLRTLSLENCLVVD--V----AIIGDLKKLEILSLKHSSIEQ----  316 (679)
Q Consensus       253 ~~~l~~L~~L~l~~~-~l~-----~lp~~i~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~~----  316 (679)
                      +...+.|++|+|++| .+.     .+...+...++|++|+|++|.+.+  .    ..+...++|++|+|++|.|..    
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            345556666666666 554     133444555666666666666544  1    223344556666666666552    


Q ss_pred             -cchhhhcCCCCCEEcc
Q 005744          317 -LPREIGQLTCLKLLDL  332 (679)
Q Consensus       317 -lp~~i~~L~~L~~L~l  332 (679)
                       +...+...++|++|++
T Consensus       112 ~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A          112 ALVEALQSNTSLIELRI  128 (185)
T ss_dssp             HHHHGGGGCSSCCEEEC
T ss_pred             HHHHHHHhCCCceEEEe
Confidence             3444455555666666

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.04  E-value=2.6e-06  Score=86.88  Aligned_cols=149  Identities=15%  Similarity=0.123  Sum_probs=91.4

Q ss_pred             cCCCeEEEccCCCcc----------cCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCc-CCccc
Q 005744          209 DEAPTAISIPFRGIY----------ELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS-LPSSL  276 (679)
Q Consensus       209 ~~~l~~l~l~~~~~~----------~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~i  276 (679)
                      .++++.|.+.....+          .+...+ .+|+|+.|.++++... .++. + . +++|+.|++..+.+.. ....+
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~-~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-P-RPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-B-CTTCSEEEEECSBCCHHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-c-CCCCcEEEEecCCCChHHHHHH
Confidence            456777777543221          122222 6788888888876322 3443 2 3 7888999988877652 11223


Q ss_pred             c--CCcCCCEEEcCCc--cc-CC--c----ccc--cCCCCCcEEEecCCCCCc-cchhh---hcCCCCCEEcccCCcccc
Q 005744          277 G--CLINLRTLSLENC--LV-VD--V----AII--GDLKKLEILSLKHSSIEQ-LPREI---GQLTCLKLLDLSNCSKLK  339 (679)
Q Consensus       277 ~--~l~~L~~L~L~~~--~~-~~--~----~~i--~~L~~L~~L~l~~~~l~~-lp~~i---~~L~~L~~L~l~~~~~l~  339 (679)
                      .  .+++|++|+|+.+  .. ..  .    ..+  +.+++|++|++++|.+.. .+..+   ..+++|++|+++. +.++
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~  292 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLT  292 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCB
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCC
Confidence            2  6888888888532  11 11  1    122  357889999998887762 22223   2578899999987 4565


Q ss_pred             c-----cCcccccCCCCCcEEEccCCccc
Q 005744          340 E-----IRPNVISNLTRLEELYMGNSFTQ  363 (679)
Q Consensus       340 ~-----lp~~~l~~l~~L~~L~l~~~~~~  363 (679)
                      .     ++.. +..+++|+.|++++|.+.
T Consensus       293 d~G~~~L~~~-L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          293 DEGARLLLDH-VDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred             hHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence            5     2222 456788999999888654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.96  E-value=4.3e-06  Score=76.69  Aligned_cols=106  Identities=14%  Similarity=0.141  Sum_probs=65.7

Q ss_pred             CCcceeeeeeccC-CcccC---CCchhhcCCCCccEEEeCCCcCCc-----CCccccCCcCCCEEEcCCcccCC------
Q 005744          230 GFLKLKLFLFFTE-NLSLQ---IPDPFFEGMTELRVLDLTGFRFHS-----LPSSLGCLINLRTLSLENCLVVD------  294 (679)
Q Consensus       230 ~~~~L~~L~l~~~-~~~~~---~~~~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~L~~~~~~~------  294 (679)
                      ..+.|++|++++| .+...   .....+...++|++|+|++|.+..     +...+...++|++|+|++|.+.+      
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            3455555555555 43321   011123556777888888877652     44455566778888888887765      


Q ss_pred             cccccCCCCCcEEEe--cCCCCCc-----cchhhhcCCCCCEEcccCC
Q 005744          295 VAIIGDLKKLEILSL--KHSSIEQ-----LPREIGQLTCLKLLDLSNC  335 (679)
Q Consensus       295 ~~~i~~L~~L~~L~l--~~~~l~~-----lp~~i~~L~~L~~L~l~~~  335 (679)
                      ...+...+.|++|++  ++|.+..     +...+...++|++|++++|
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            245666677888888  7777772     4444556667777777663

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.91  E-value=1.2e-05  Score=77.56  Aligned_cols=78  Identities=28%  Similarity=0.264  Sum_probs=57.0

Q ss_pred             cCCCCccEEEeCCCcCCcC---CccccCCcCCCEEEcCCcccCCcccccCCC--CCcEEEecCCCCC-ccc-------hh
Q 005744          254 EGMTELRVLDLTGFRFHSL---PSSLGCLINLRTLSLENCLVVDVAIIGDLK--KLEILSLKHSSIE-QLP-------RE  320 (679)
Q Consensus       254 ~~l~~L~~L~l~~~~l~~l---p~~i~~l~~L~~L~L~~~~~~~~~~i~~L~--~L~~L~l~~~~l~-~lp-------~~  320 (679)
                      .++++|++|+|++|.++.+   |..+..+++|++|+|++|.+.....+..+.  +|++|++++|.+. .+|       ..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            5678889999999888764   456678888888888888887755555555  8888888888776 333       23


Q ss_pred             hhcCCCCCEEc
Q 005744          321 IGQLTCLKLLD  331 (679)
Q Consensus       321 i~~L~~L~~L~  331 (679)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            56677777775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.80  E-value=2e-06  Score=83.06  Aligned_cols=79  Identities=22%  Similarity=0.267  Sum_probs=47.0

Q ss_pred             cCCcCCCEEEcCCcccCCc----ccccCCCCCcEEEecCCCCCccchhhhcCC--CCCEEcccCCccccccCc------c
Q 005744          277 GCLINLRTLSLENCLVVDV----AIIGDLKKLEILSLKHSSIEQLPREIGQLT--CLKLLDLSNCSKLKEIRP------N  344 (679)
Q Consensus       277 ~~l~~L~~L~L~~~~~~~~----~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~--~L~~L~l~~~~~l~~lp~------~  344 (679)
                      .++++|++|+|++|.+...    ..++.+++|++|+|++|.++.+. .+..+.  +|++|++++|.-...+|.      .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            4567777788877777662    33456777777777777777652 344444  667777766443233331      2


Q ss_pred             cccCCCCCcEEE
Q 005744          345 VISNLTRLEELY  356 (679)
Q Consensus       345 ~l~~l~~L~~L~  356 (679)
                      .+..+++|+.|+
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            245556666665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.76  E-value=0.0005  Score=71.33  Aligned_cols=110  Identities=11%  Similarity=0.161  Sum_probs=74.1

Q ss_pred             CCCchhhcCCC-CccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcc---cCC--cccccCCCCCcEEEecCCCCCccch
Q 005744          247 QIPDPFFEGMT-ELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL---VVD--VAIIGDLKKLEILSLKHSSIEQLPR  319 (679)
Q Consensus       247 ~~~~~~~~~l~-~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~---~~~--~~~i~~L~~L~~L~l~~~~l~~lp~  319 (679)
                      .+.+..|.+++ .|+.+.+..+ ++.+ ..+|.++.+|+.+.+..+.   +..  ...|..+.+|+.+.+.. .++.++.
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~~  130 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEIDS  130 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEECT
T ss_pred             EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceehh
Confidence            45566677774 5888888764 6666 4568888999999887653   333  35566777777766654 3555544


Q ss_pred             -hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCC
Q 005744          320 -EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS  360 (679)
Q Consensus       320 -~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~  360 (679)
                       .+..+.+|+.+.+..  .+..++...+....+|+.+.+..+
T Consensus       131 ~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~  170 (394)
T 4gt6_A          131 EAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS  170 (394)
T ss_dssp             TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT
T ss_pred             hhhhhhcccccccccc--eeeeecccceecccccccccccce
Confidence             356777888887764  456666666777778888777554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.33  E-value=0.0068  Score=62.24  Aligned_cols=104  Identities=16%  Similarity=0.162  Sum_probs=57.3

Q ss_pred             hhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCcccccc
Q 005744          471 EGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP  550 (679)
Q Consensus       471 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~  550 (679)
                      .++..|+.+.+..+  ++.+..  ..+....+|+.+.+..  +++.+....+      ..+++|+.+.+.+ ..++.++.
T Consensus       237 ~~~~~L~~i~lp~~--v~~I~~--~aF~~~~~l~~i~l~~--~i~~i~~~aF------~~c~~L~~i~l~~-~~i~~I~~  303 (379)
T 4h09_A          237 YGMKALDEIAIPKN--VTSIGS--FLLQNCTALKTLNFYA--KVKTVPYLLC------SGCSNLTKVVMDN-SAIETLEP  303 (379)
T ss_dssp             TTCSSCCEEEECTT--CCEECT--TTTTTCTTCCEEEECC--CCSEECTTTT------TTCTTCCEEEECC-TTCCEECT
T ss_pred             cCCccceEEEcCCC--ccEeCc--cccceeehhccccccc--cceecccccc------ccccccccccccc-cccceehh
Confidence            45566666666543  444432  2234556677666643  4555544333      2567777777755 34666633


Q ss_pred             HHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeec
Q 005744          551 FSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKL  602 (679)
Q Consensus       551 ~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l  602 (679)
                       ..+.++.+|+.+.+.+  +++.+...            ++.++++|+++.+
T Consensus       304 -~aF~~c~~L~~i~lp~--~l~~I~~~------------aF~~C~~L~~i~i  340 (379)
T 4h09_A          304 -RVFMDCVKLSSVTLPT--ALKTIQVY------------AFKNCKALSTISY  340 (379)
T ss_dssp             -TTTTTCTTCCEEECCT--TCCEECTT------------TTTTCTTCCCCCC
T ss_pred             -hhhcCCCCCCEEEcCc--cccEEHHH------------HhhCCCCCCEEEE
Confidence             3456677777777743  24444321            4556666666665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.25  E-value=0.0077  Score=61.86  Aligned_cols=289  Identities=11%  Similarity=0.087  Sum_probs=139.2

Q ss_pred             CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCcccCC--cccccCCCCCcE
Q 005744          230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEI  306 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~  306 (679)
                      ...+|+.+.+... + ..+++..|.++.+|+.+++..+ ++.++ .+|.++ .|+.+.+..+ +..  ...|.. .+|+.
T Consensus        44 ~~~~i~~v~ip~~-v-t~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~  117 (379)
T 4h09_A           44 DRDRISEVRVNSG-I-TSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDD  117 (379)
T ss_dssp             GGGGCSEEEECTT-E-EEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSE
T ss_pred             cccCCEEEEeCCC-c-cChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCccc
Confidence            4456666666432 2 2566666777888888887643 56553 345554 5666655433 222  223333 36777


Q ss_pred             EEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccC-----CcCChhhhhcCC
Q 005744          307 LSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ-----SNASLGELKQLS  381 (679)
Q Consensus       307 L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~~l~~l~  381 (679)
                      +.+..+ +..+....-.-.+|..+.+..  .++.+....+....+++...+............     ............
T Consensus       118 i~lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (379)
T 4h09_A          118 FEFPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK  194 (379)
T ss_dssp             EECCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred             ccCCCc-cccccccccccceeeeeeccc--eeeccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence            777553 343433322223455554443  344555444566666666665443221111000     000000011111


Q ss_pred             CCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCcc
Q 005744          382 RLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFK  461 (679)
Q Consensus       382 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  461 (679)
                      .+..+.+.... ..+                  ....+.....++.+.+... ...++.........|+.+.+...  ++
T Consensus       195 ~~~~~~~~~~~-~~i------------------~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~  252 (379)
T 4h09_A          195 TGTEFTIPSTV-KTV------------------TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VT  252 (379)
T ss_dssp             CCSEEECCTTC-CEE------------------CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CC
T ss_pred             cccccccccce-eEE------------------eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC--cc
Confidence            12221111100 000                  0012223344444444321 12222222222455666665432  33


Q ss_pred             cccc-cccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEe
Q 005744          462 NVVH-ELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVE  540 (679)
Q Consensus       462 ~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~  540 (679)
                      .+.. .+   .++.+|+.+.+..  .++.+..  ..+..+++|+.+.+.+ ..++.+....+.      .+.+|+.+.|.
T Consensus       253 ~I~~~aF---~~~~~l~~i~l~~--~i~~i~~--~aF~~c~~L~~i~l~~-~~i~~I~~~aF~------~c~~L~~i~lp  318 (379)
T 4h09_A          253 SIGSFLL---QNCTALKTLNFYA--KVKTVPY--LLCSGCSNLTKVVMDN-SAIETLEPRVFM------DCVKLSSVTLP  318 (379)
T ss_dssp             EECTTTT---TTCTTCCEEEECC--CCSEECT--TTTTTCTTCCEEEECC-TTCCEECTTTTT------TCTTCCEEECC
T ss_pred             EeCcccc---ceeehhccccccc--cceeccc--cccccccccccccccc-cccceehhhhhc------CCCCCCEEEcC
Confidence            3332 23   5677788887754  3444432  3345678888888866 456666555443      66788888885


Q ss_pred             cCCCccccccHHHHHHhhcCcEEEEc
Q 005744          541 GCHRVKHLFPFSLVKNLLQLQKVKVT  566 (679)
Q Consensus       541 ~c~~L~~l~~~~~~~~l~~L~~L~i~  566 (679)
                      .  .++.+.. ..+.+|.+|+.+.+.
T Consensus       319 ~--~l~~I~~-~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          319 T--ALKTIQV-YAFKNCKALSTISYP  341 (379)
T ss_dssp             T--TCCEECT-TTTTTCTTCCCCCCC
T ss_pred             c--cccEEHH-HHhhCCCCCCEEEEC
Confidence            3  5677633 345667777776664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.53  E-value=0.022  Score=48.18  Aligned_cols=51  Identities=18%  Similarity=0.260  Sum_probs=24.4

Q ss_pred             EEEeCCCcCC--cCCccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCC
Q 005744          261 VLDLTGFRFH--SLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSS  313 (679)
Q Consensus       261 ~L~l~~~~l~--~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~  313 (679)
                      +++.+++.++  .+|..+.  .+|++|+|++|.+..  +..|..+.+|++|+|++|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            4455555555  5554332  245555555555444  2334445555555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.31  E-value=0.022  Score=48.10  Aligned_cols=54  Identities=17%  Similarity=0.276  Sum_probs=39.3

Q ss_pred             EEEecCCCCC--ccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcc
Q 005744          306 ILSLKHSSIE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT  362 (679)
Q Consensus       306 ~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~  362 (679)
                      +++.++++++  .+|..+.  .+|++|+|++ +.++.+|.+.+..+++|++|++.+|..
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence            5666777777  7775432  4678888887 677888877777788888888887754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.74  E-value=0.018  Score=52.20  Aligned_cols=80  Identities=19%  Similarity=0.260  Sum_probs=37.6

Q ss_pred             CCCCccEEEeCCC-cCC-----cCCccccCCcCCCEEEcCCcccCC--c----ccccCCCCCcEEEecCCCCC-----cc
Q 005744          255 GMTELRVLDLTGF-RFH-----SLPSSLGCLINLRTLSLENCLVVD--V----AIIGDLKKLEILSLKHSSIE-----QL  317 (679)
Q Consensus       255 ~l~~L~~L~l~~~-~l~-----~lp~~i~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~-----~l  317 (679)
                      +-+.|+.|+|+++ .+.     .+-+.+..-..|+.|+|++|.+.+  -    ..+..=+.|++|+|++|.|.     .+
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3445555555553 433     123334444556666666665544  1    12223345666666666555     12


Q ss_pred             chhhhcCCCCCEEcccC
Q 005744          318 PREIGQLTCLKLLDLSN  334 (679)
Q Consensus       318 p~~i~~L~~L~~L~l~~  334 (679)
                      -..+..-+.|++|+|++
T Consensus       119 a~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHTTTTCCCSEEECCC
T ss_pred             HHHHhhCCceeEEECCC
Confidence            22333344455555553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.26  E-value=0.038  Score=50.08  Aligned_cols=115  Identities=14%  Similarity=0.113  Sum_probs=72.8

Q ss_pred             ccCCcCCCEEEcCCc-ccCC------cccccCCCCCcEEEecCCCCC-----ccchhhhcCCCCCEEcccCCccccccCc
Q 005744          276 LGCLINLRTLSLENC-LVVD------VAIIGDLKKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSNCSKLKEIRP  343 (679)
Q Consensus       276 i~~l~~L~~L~L~~~-~~~~------~~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~lp~  343 (679)
                      +.+-+.|+.|+|+++ .+.+      -..+..-..|+.|+|++|.|.     .+...+..-+.|++|+|++ +.++.-..
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig~~Ga  115 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFLTPELL  115 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBCCHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcCCHHHH
Confidence            345578999999985 6654      244566678999999999887     4455566778899999988 55554221


Q ss_pred             ----ccccCCCCCcEEEccCCcc-cceeccCCcCChhhhhcCCCCceEEeecCC
Q 005744          344 ----NVISNLTRLEELYMGNSFT-QWKVEGQSNASLGELKQLSRLTTLEVHIPD  392 (679)
Q Consensus       344 ----~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  392 (679)
                          ..+..=+.|++|+++++.. .... .........|..-+.|+.|+++.+.
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~-~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGN-QVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCH-HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCH-HHHHHHHHHHHhCCCcCeEeccCCC
Confidence                1244456789999876522 1000 0001223456666778888887654

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=92.08  E-value=0.94  Score=46.52  Aligned_cols=149  Identities=13%  Similarity=0.023  Sum_probs=85.1

Q ss_pred             eeccCCCHHHHHHHHHHHh---CCCCCCCChHHHHHHHHHHhC------CcchHHHHHHHHh---c---CC---ChHHHH
Q 005744           10 FLDWLLSNEEASHLFEKIV---GHSAKKSDFETIGVEIVAKCG------GLPIAIKTIANAL---K---NK---SPRIWK   71 (679)
Q Consensus        10 ~~~~~L~~~~~~~Lf~~~~---~~~~~~~~~~~~~~~i~~~c~------GlPLai~~ig~~L---~---~~---~~~~W~   71 (679)
                      +++.+|+.++++++|..++   |...  .--.+..+.|++.|+      |.|..+..+....   +   +.   +.+.+.
T Consensus       210 i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~  287 (412)
T 1w5s_A          210 LHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVR  287 (412)
T ss_dssp             EECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred             eeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence            8999999999999997664   3321  112567888999999      9997665544321   1   11   344555


Q ss_pred             HHHHHhhccCCCcccccccccceeeeccccCChhhHHHHHHhccccC--CCCcccHHhHHHHHhh-----cccccccchH
Q 005744           72 DAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLK--DGSRIAVDDLLRYVMG-----LRLLTNADTL  144 (679)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~l~~SY~~L~~~~lk~cfl~~~~fp--~~~~~~~~~li~~wia-----eg~i~~~~~~  144 (679)
                      .+......            ...+.-++..||.+ .+.++..++.+.  .+..+...++...+..     .|. .+..  
T Consensus       288 ~~~~~~~~------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--  351 (412)
T 1w5s_A          288 KAVSENEA------------ASIQTHELEALSIH-ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPRG--  351 (412)
T ss_dssp             HHHHHC------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCCC--
T ss_pred             HHHHHHhc------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCCC--
Confidence            44443210            12345567889988 688888888654  3335666666554421     121 1111  


Q ss_pred             HHHHHHHHHHHHHHHhccccccC----CCCCceEehhhH
Q 005744          145 EAARNRVHTLIDNLKSASLLFDG----DSEDHAKMHRII  179 (679)
Q Consensus       145 ~~~~~~~~~l~~~L~~~~~~~~~----~~~~~~~mhdli  179 (679)
                         ...+.+++++|.+.+++...    +..+.+++|++.
T Consensus       352 ---~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~  387 (412)
T 1w5s_A          352 ---YTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA  387 (412)
T ss_dssp             ---HHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred             ---HHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence               12344678888888988542    223345555544

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=91.88  E-value=0.72  Score=46.10  Aligned_cols=150  Identities=13%  Similarity=0.101  Sum_probs=83.9

Q ss_pred             CceeccCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHHHhcC-CChHHH-HHHHHHhhccCCCcc
Q 005744            8 EDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKN-KSPRIW-KDAVNQLSNSNPRKI   85 (679)
Q Consensus         8 ~~~~~~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~-~~~~~W-~~~~~~l~~~~~~~~   85 (679)
                      ..+++.+|+.+|+.+++...+.......+ .+...++++.|+|.|+++..++..+.. .+...| ..+.+.....     
T Consensus       196 ~~i~l~pl~~~e~~~~l~~~~~~~~~~~~-~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  269 (350)
T 2qen_A          196 GEVLVKPFDKDTSVEFLKRGFREVNLDVP-ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGL-----  269 (350)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----
T ss_pred             ceeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHH-----
Confidence            47999999999999999875421111112 457889999999999999999876542 222222 1121111000     


Q ss_pred             cccccccceeeeccccCChhhHHHHHHhccccCCCCcccHHhHHHHHhhcccccccchHHHHHHHHHHHHHHHHhccccc
Q 005744           86 QGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLF  165 (679)
Q Consensus        86 ~~~~~~~~~l~~SY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~~~L~~~~~~~  165 (679)
                        +..  .+-.+.+ . +.. .+..+..+|.   + ..+..++.....+.. - ...     .....++++.|.+.+++.
T Consensus       270 --~~~--~l~~l~~-~-~~~-~~~~l~~la~---g-~~~~~~l~~~~~~~~-~-~~~-----~~~~~~~l~~L~~~gli~  331 (350)
T 2qen_A          270 --IMG--ELEELRR-R-SPR-YVDILRAIAL---G-YNRWSLIRDYLAVKG-T-KIP-----EPRLYALLENLKKMNWIV  331 (350)
T ss_dssp             --HHH--HHHHHHH-H-CHH-HHHHHHHHHT---T-CCSHHHHHHHHHHTT-C-CCC-----HHHHHHHHHHHHHTTSEE
T ss_pred             --HHH--HHHHHHh-C-Chh-HHHHHHHHHh---C-CCCHHHHHHHHHHHh-C-CCC-----HHHHHHHHHHHHhCCCEE
Confidence              000  0011112 2 555 6888888886   2 245555554442211 0 111     123446778888889886


Q ss_pred             cCCCCCceEe-hhhHHHHH
Q 005744          166 DGDSEDHAKM-HRIIHAIA  183 (679)
Q Consensus       166 ~~~~~~~~~m-hdli~~l~  183 (679)
                      ..+  ..|.+ |.+++++.
T Consensus       332 ~~~--~~y~~~~p~~~~~~  348 (350)
T 2qen_A          332 EED--NTYKIADPVVATVL  348 (350)
T ss_dssp             EET--TEEEESSHHHHHHH
T ss_pred             ecC--CEEEEecHHHHHHH
Confidence            542  34554 66666653

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=90.21  E-value=0.85  Score=45.65  Aligned_cols=147  Identities=11%  Similarity=0.093  Sum_probs=82.9

Q ss_pred             CceeccCCCHHHHHHHHHHHhCC-CCCCCChHHHHHHHHHHhCCcchHHHHHHHHhcC-CChHHHH-HHHHHhhccCCCc
Q 005744            8 EDFLDWLLSNEEASHLFEKIVGH-SAKKSDFETIGVEIVAKCGGLPIAIKTIANALKN-KSPRIWK-DAVNQLSNSNPRK   84 (679)
Q Consensus         8 ~~~~~~~L~~~~~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~-~~~~~W~-~~~~~l~~~~~~~   84 (679)
                      ..+++.+|+.+|+.+++...+.. ....++.    .+|++.|+|.|+++..++..+.. .+...|- .+.+.....    
T Consensus       202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----  273 (357)
T 2fna_A          202 STVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKL----  273 (357)
T ss_dssp             EEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----
T ss_pred             ceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHH----
Confidence            57999999999999999886521 1122222    78999999999999999887652 2333331 111111000    


Q ss_pred             ccccccccceeeecc--ccCChhhHHHHHHhccccCCCCcccHHhHHHHHh-hcccccccchHHHHHHHHHHHHHHHHhc
Q 005744           85 IQGMDADLSSIELSY--EFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVM-GLRLLTNADTLEAARNRVHTLIDNLKSA  161 (679)
Q Consensus        85 ~~~~~~~~~~l~~SY--~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wi-aeg~i~~~~~~~~~~~~~~~l~~~L~~~  161 (679)
                         +...+  -.+.|  ..+|.. .+..+..+|.   + . +...+..... ..|.  +..     .....++++.|.+.
T Consensus       274 ---~~~~l--~~~~~~~~~l~~~-~~~~l~~la~---g-~-~~~~l~~~~~~~~g~--~~~-----~~~~~~~L~~L~~~  335 (357)
T 2fna_A          274 ---ILKEF--ENFLHGREIARKR-YLNIMRTLSK---C-G-KWSDVKRALELEEGI--EIS-----DSEIYNYLTQLTKH  335 (357)
T ss_dssp             ---HHHHH--HHHHTTCGGGHHH-HHHHHHHHTT---C-B-CHHHHHHHHHHHHCS--CCC-----HHHHHHHHHHHHHT
T ss_pred             ---HHHHH--HHHhhccccccHH-HHHHHHHHHc---C-C-CHHHHHHHHHHhcCC--CCC-----HHHHHHHHHHHHhC
Confidence               00000  01111  156776 6888888887   2 1 4444433221 1121  001     12344678888889


Q ss_pred             cccccCCCCCceE-ehhhHHHH
Q 005744          162 SLLFDGDSEDHAK-MHRIIHAI  182 (679)
Q Consensus       162 ~~~~~~~~~~~~~-mhdli~~l  182 (679)
                      +++...+  ..|+ .|.++++.
T Consensus       336 gli~~~~--~~y~f~~~~~~~~  355 (357)
T 2fna_A          336 SWIIKEG--EKYCPSEPLISLA  355 (357)
T ss_dssp             TSEEESS--SCEEESSHHHHHH
T ss_pred             CCEEecC--CEEEecCHHHHHh
Confidence            9886543  3455 56777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	679
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	5e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	7e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	8e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.5 bits (138), Expect = 1e-09
 Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 6/88 (6%)

Query: 15  LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAV 74
           L  +E     E            E +  + +    G P  +     + + K+        
Sbjct: 185 LEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLN 244

Query: 75  NQLSNSNPRKIQGMDADLSSIELSYEFL 102
           N+L +     ++           SY+ L
Sbjct: 245 NKLESRGLVGVE------CITPYSYKSL 266

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.9 bits (136), Expect = 3e-09
 Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 28/166 (16%)

Query: 215 ISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS 274
           +S+    + ++        L         +S   P     G+T+L  L L   +  ++  
Sbjct: 224 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP 280

Query: 275 SLGC---------------------LINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSS 313
             G                      L NL  L+L    + D++ +  L KL+ L   ++ 
Sbjct: 281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNK 340

Query: 314 IEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
           +  +   +  LT +  L   +  ++ ++ P  ++NLTR+ +L + +
Sbjct: 341 VSDVS-SLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 4e-05
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 279 LINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKL 338
           L       L    V D     DL ++  L      I+ +   +  L  L  ++ SN  +L
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN-QL 78

Query: 339 KEIRPNVISNLTRLEELYMGNSFTQW 364
            +I P  + NLT+L ++ M N+    
Sbjct: 79  TDITP--LKNLTKLVDILMNNNQIAD 102

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 12/91 (13%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 239 FFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAII 298
            +  N S        +    L  L+++  +   LP+       L  L      + +  + 
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAE--VP 320

Query: 299 GDLKKLEILSLKHSSIEQLPREIGQLTCLKL 329
              + L+ L ++++ + + P     +  L++
Sbjct: 321 ELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 7/75 (9%)

Query: 278 CLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSK 337
              +L  L++ N  +++  +     +LE L    + + ++P        LK L +     
Sbjct: 282 LPPSLEELNVSNNKLIE--LPALPPRLERLIASFNHLAEVPELPQN---LKQLHVEYN-P 335

Query: 338 LKEIRPNVISNLTRL 352
           L+E  P++  ++  L
Sbjct: 336 LREF-PDIPESVEDL 349

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 5e-06
 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 260 RVLDLTGFRFHSLPSSLGCLINLRTLSLE-NCLVVDVAIIGDLKKLEILSLKHSSIEQLP 318
           RVL L       L   L  L+ +  L L  N L      +  L+ LE+L    +++E + 
Sbjct: 1   RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 319 REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGEL 377
             +  L  L+ L L N    +      + +  RL  L + GNS    + EG        L
Sbjct: 60  -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC--QEEGIQERLAEML 116

Query: 378 KQLSRLTT 385
             +S + T
Sbjct: 117 PSVSSILT 124

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 7/147 (4%)

Query: 241 TENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGD 300
           T  L  Q     +      R LDL G++   + +    L     +   +  +  +     
Sbjct: 4   TAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPL 61

Query: 301 LKKLEILSL-KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
           L++L+ L +  +            L  L  L L+N S ++    + +++L  L  L +  
Sbjct: 62  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 121

Query: 360 SFTQWKVEGQSNASLGELKQLSRLTTL 386
           +        + +  L  + ++ ++  L
Sbjct: 122 NPVTN----KKHYRLYVIYKVPQVRVL 144

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 5e-05
 Identities = 38/265 (14%), Positives = 88/265 (33%), Gaps = 19/265 (7%)

Query: 283 RTLSLENCLVVDVAIIGDLKK-LEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEI 341
           +TL L    +        L + +       S ++Q   E      ++ +DLSN       
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 342 RPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH------IPDAQV 395
              ++S  ++L+ L +       ++      +L +   L RL            +     
Sbjct: 63  LHGILSQCSKLQNLSLEGL----RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 396 MPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLD 455
               L  + L             +  + +    +L L+          +        +L 
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 456 ELAGFKNVVHELDDEEGFAR---LRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLI 512
            L    +V+ + D  + F +   L+HL +    +I+    +   +G  P L++L +  ++
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP--ETLLELGEIPTLKTLQVFGIV 236

Query: 513 N---LEKVCDGKVRLNEDDKSFSNL 534
               L+ + +    L  +   F+ +
Sbjct: 237 PDGTLQLLKEALPHLQINCSHFTTI 261

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 12/113 (10%), Positives = 35/113 (30%), Gaps = 23/113 (20%)

Query: 258 ELRVLDLTGFRF--HSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIE 315
           +++ LD+             L  L   + + L++C                  L  +  +
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-----------------GLTEARCK 45

Query: 316 QLPREIGQLTCLKLLDLSNC----SKLKEIRPNVISNLTRLEELYMGNSFTQW 364
            +   +     L  L+L +       +  +   + +   ++++L + N     
Sbjct: 46  DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 3e-04
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENC 290
           ++P+  F G +   +LD++  R HSLPS  L  L  LR  S  N 
Sbjct: 191 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 9/61 (14%), Positives = 17/61 (27%)

Query: 304 LEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363
              L             +     L  L + N   L+ +    +  L  L  L +  S  +
Sbjct: 10  SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 364 W 364
           +
Sbjct: 70  F 70

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 307 LSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQW 364
           L      IE++   +  L   K L LS    +++I    +S +  L  L +G +  + 
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKISS--LSGMENLRILSLGRNLIKK 84

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 8e-04
 Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 8/133 (6%)

Query: 258 ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGD-LKKLEILSLKHSSI-- 314
             + LDL G R       L        L+  + +   + II + + +L  L+L ++ +  
Sbjct: 23  SQQALDLKGLRSDP---DLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYR 79

Query: 315 -EQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNAS 373
            + +   + +   LK+L+LS   +LK  R        +LEEL++  +        QS   
Sbjct: 80  LDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI 138

Query: 374 LGELKQLSRLTTL 386
               ++  +L  L
Sbjct: 139 SAIRERFPKLLRL 151

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEI 306
                    +++L  L     +   +   L  L NL  + L+N  + DV+ + +   L I
Sbjct: 163 VSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFI 221

Query: 307 LSLKH 311
           ++L +
Sbjct: 222 VTLTN 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	679
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.87
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.8
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.78
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.78
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.75
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.75
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.42
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.17
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.15
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.02
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.94
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.9
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.76
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.53
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.85
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.82
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.04
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.0
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.6
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.41

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=8e-21  Score=196.82  Aligned_cols=340  Identities=17%  Similarity=0.197  Sum_probs=159.4

Q ss_pred             CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCCcccccCCCCCcEEEe
Q 005744          230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL  309 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l  309 (679)
                      .+.+|++|+++++.+. .+. + +..+++|++|++++|.++.+|. ++++++|++|++++|.+.....++++++|++|++
T Consensus        42 ~l~~l~~L~l~~~~I~-~l~-g-l~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~  117 (384)
T d2omza2          42 DLDQVTTLQADRLGIK-SID-G-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL  117 (384)
T ss_dssp             HHTTCCEEECCSSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             HhCCCCEEECCCCCCC-Ccc-c-cccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccccccccccccccc
Confidence            3455666666666554 232 2 3556666666666666666653 6666666666666666655444666666666666


Q ss_pred             cCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEee
Q 005744          310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH  389 (679)
Q Consensus       310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  389 (679)
                      +++.++.++. ......+..+.... +.+..+..................            .....+...+........
T Consensus       118 ~~~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~  183 (384)
T d2omza2         118 FNNQITDIDP-LKNLTNLNRLELSS-NTISDISALSGLTSLQQLSFGNQV------------TDLKPLANLTTLERLDIS  183 (384)
T ss_dssp             CSSCCCCCGG-GTTCTTCSEEEEEE-EEECCCGGGTTCTTCSEEEEEESC------------CCCGGGTTCTTCCEEECC
T ss_pred             cccccccccc-cccccccccccccc-cccccccccccccccccccccccc------------chhhhhcccccccccccc
Confidence            6665555543 23333444443333 122222111000000000100000            011111122222222222


Q ss_pred             cCCCccCCccccccccceeEEEeCCccc--CCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCcccccccc
Q 005744          390 IPDAQVMPQDLVFVELERFRICIGDVWS--WSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHEL  467 (679)
Q Consensus       390 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  467 (679)
                      .+..........+++++.+.+..+....  .....++++.+.++++....++ .+.. +++|+.|++.+|.. ..++. +
T Consensus       184 ~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~-l~~L~~L~l~~n~l-~~~~~-~  259 (384)
T d2omza2         184 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLAS-LTNLTDLDLANNQI-SNLAP-L  259 (384)
T ss_dssp             SSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGG-CTTCSEEECCSSCC-CCCGG-G
T ss_pred             ccccccccccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc-hhhc-ccccchhccccCcc-CCCCc-c
Confidence            2211111111122333333322221111  1122334444555544433332 2222 46666666666543 23322 2


Q ss_pred             cchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccc
Q 005744          468 DDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKH  547 (679)
Q Consensus       468 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~  547 (679)
                         ..+++|++|+++++.. ..    ......++.++.+.+.+ +.++.+..        ...+++++.|+++++ ++++
T Consensus       260 ---~~~~~L~~L~l~~~~l-~~----~~~~~~~~~l~~l~~~~-n~l~~~~~--------~~~~~~l~~L~ls~n-~l~~  321 (384)
T d2omza2         260 ---SGLTKLTELKLGANQI-SN----ISPLAGLTALTNLELNE-NQLEDISP--------ISNLKNLTYLTLYFN-NISD  321 (384)
T ss_dssp             ---TTCTTCSEEECCSSCC-CC----CGGGTTCTTCSEEECCS-SCCSCCGG--------GGGCTTCSEEECCSS-CCSC
T ss_pred             ---cccccCCEeeccCccc-CC----CCccccccccccccccc-cccccccc--------cchhcccCeEECCCC-CCCC
Confidence               5566677777766542 11    12234556666666655 33333211        345667777777664 5666


Q ss_pred             cccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCc
Q 005744          548 LFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPG  627 (679)
Q Consensus       548 l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~  627 (679)
                      +++   +..+++|++|++++| .++.++              .+..+++|++|+++++ +++.++.              
T Consensus       322 l~~---l~~l~~L~~L~L~~n-~l~~l~--------------~l~~l~~L~~L~l~~N-~l~~l~~--------------  368 (384)
T d2omza2         322 ISP---VSSLTKLQRLFFANN-KVSDVS--------------SLANLTNINWLSAGHN-QISDLTP--------------  368 (384)
T ss_dssp             CGG---GGGCTTCCEEECCSS-CCCCCG--------------GGGGCTTCCEEECCSS-CCCBCGG--------------
T ss_pred             Ccc---cccCCCCCEEECCCC-CCCCCh--------------hHcCCCCCCEEECCCC-cCCCChh--------------
Confidence            532   456677777777766 455543              2446677777777654 4444321              


Q ss_pred             cccCCCCCCCccCccccccCCCcceeecccc
Q 005744          628 IIAEGDPKDFTSLFNERVVFPSLKKLKLSSI  658 (679)
Q Consensus       628 ~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~  658 (679)
                                      ...+|+|+.|+|++|
T Consensus       369 ----------------l~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 ----------------LANLTRITQLGLNDQ  383 (384)
T ss_dssp             ----------------GTTCTTCSEEECCCE
T ss_pred             ----------------hccCCCCCEeeCCCC
Confidence                            235689999999876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=7.1e-20  Score=189.57  Aligned_cols=322  Identities=20%  Similarity=0.223  Sum_probs=214.8

Q ss_pred             hhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEE
Q 005744          207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS  286 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  286 (679)
                      ....++++|+++++.+..+...-.+++|++|++++|.+. .+++  ++++++|++|++++|.+..+++ ++++++|++|+
T Consensus        41 ~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~  116 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT  116 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred             HHhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCC-CCcc--ccCCcccccccccccccccccc-ccccccccccc
Confidence            345789999999999988865448999999999999987 4554  6899999999999999998874 89999999999


Q ss_pred             cCCcccCCcccccCCCCCcEEEecCCCCCccchhh--------------------hcCCCCCEEcccCCccccccCcccc
Q 005744          287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREI--------------------GQLTCLKLLDLSNCSKLKEIRPNVI  346 (679)
Q Consensus       287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i--------------------~~L~~L~~L~l~~~~~l~~lp~~~l  346 (679)
                      ++++.+...........+..+....+.+..+....                    ............. +.. .... ..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-~~  193 (384)
T d2omza2         117 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS-NKV-SDIS-VL  193 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCS-SCC-CCCG-GG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccc-ccc-cccc-cc
Confidence            99999888555666677777777766555433211                    1111111111111 111 1111 13


Q ss_pred             cCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcc
Q 005744          347 SNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSK  426 (679)
Q Consensus       347 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~  426 (679)
                      ..+++++.++++++.+.         .+......++|+.|++++|.+..++.                    +..+++++
T Consensus       194 ~~l~~~~~l~l~~n~i~---------~~~~~~~~~~L~~L~l~~n~l~~~~~--------------------l~~l~~L~  244 (384)
T d2omza2         194 AKLTNLESLIATNNQIS---------DITPLGILTNLDELSLNGNQLKDIGT--------------------LASLTNLT  244 (384)
T ss_dssp             GGCTTCSEEECCSSCCC---------CCGGGGGCTTCCEEECCSSCCCCCGG--------------------GGGCTTCS
T ss_pred             ccccccceeeccCCccC---------CCCcccccCCCCEEECCCCCCCCcch--------------------hhcccccc
Confidence            44555556655555432         11223444555566665555544332                    23345555


Q ss_pred             eEEecCCCcceechhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCcccccccccee
Q 005744          427 TLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESL  506 (679)
Q Consensus       427 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L  506 (679)
                      .+.+.++.....+. +.. +++|+.|+++++.. ..++. +   ..++.++.+.+..|.. ..    ......+++++.|
T Consensus       245 ~L~l~~n~l~~~~~-~~~-~~~L~~L~l~~~~l-~~~~~-~---~~~~~l~~l~~~~n~l-~~----~~~~~~~~~l~~L  312 (384)
T d2omza2         245 DLDLANNQISNLAP-LSG-LTKLTELKLGANQI-SNISP-L---AGLTALTNLELNENQL-ED----ISPISNLKNLTYL  312 (384)
T ss_dssp             EEECCSSCCCCCGG-GTT-CTTCSEEECCSSCC-CCCGG-G---TTCTTCSEEECCSSCC-SC----CGGGGGCTTCSEE
T ss_pred             hhccccCccCCCCc-ccc-cccCCEeeccCccc-CCCCc-c---cccccccccccccccc-cc----ccccchhcccCeE
Confidence            56666555444432 222 57888888887654 33332 3   6688888888887752 21    2334678899999


Q ss_pred             eccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCC
Q 005744          507 FLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKN  586 (679)
Q Consensus       507 ~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~  586 (679)
                      ++++ ++++.+..        ...+++|++|++++| +++.++   .+..+++|++|++++| .++.++           
T Consensus       313 ~ls~-n~l~~l~~--------l~~l~~L~~L~L~~n-~l~~l~---~l~~l~~L~~L~l~~N-~l~~l~-----------  367 (384)
T d2omza2         313 TLYF-NNISDISP--------VSSLTKLQRLFFANN-KVSDVS---SLANLTNINWLSAGHN-QISDLT-----------  367 (384)
T ss_dssp             ECCS-SCCSCCGG--------GGGCTTCCEEECCSS-CCCCCG---GGGGCTTCCEEECCSS-CCCBCG-----------
T ss_pred             ECCC-CCCCCCcc--------cccCCCCCEEECCCC-CCCCCh---hHcCCCCCCEEECCCC-cCCCCh-----------
Confidence            9988 46766531        457899999999997 788774   3578999999999877 677665           


Q ss_pred             CccccccccccceeeccC
Q 005744          587 GSISGVYFRKLHFLKLQH  604 (679)
Q Consensus       587 ~~~~l~~l~~L~~L~l~~  604 (679)
                         ++..+++|++|+|++
T Consensus       368 ---~l~~l~~L~~L~L~~  382 (384)
T d2omza2         368 ---PLANLTRITQLGLND  382 (384)
T ss_dssp             ---GGTTCTTCSEEECCC
T ss_pred             ---hhccCCCCCEeeCCC
Confidence               356899999999976

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=1.4e-18  Score=173.49  Aligned_cols=154  Identities=20%  Similarity=0.344  Sum_probs=112.1

Q ss_pred             ceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc-cccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEe
Q 005744          233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSL  309 (679)
Q Consensus       233 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l  309 (679)
                      ..++++.++..+. .+|..+   .+.+++|++++|.++.+|+ +|.++++|++|++++|.+..  +..|.++++|++|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            3456666665555 677655   2578889999998888875 68888999999999988887  567888999999999


Q ss_pred             cCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEee
Q 005744          310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH  389 (679)
Q Consensus       310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  389 (679)
                      ++|+++.+|..+  ...|+.|++.+ +.+..++...+.....+..+....+.....     ......+..+++|+.++++
T Consensus        87 ~~n~l~~l~~~~--~~~l~~L~~~~-n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~-----~~~~~~~~~l~~L~~l~l~  158 (305)
T d1xkua_          87 SKNQLKELPEKM--PKTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSS-----GIENGAFQGMKKLSYIRIA  158 (305)
T ss_dssp             CSSCCSBCCSSC--CTTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCGG-----GBCTTGGGGCTTCCEEECC
T ss_pred             cCCccCcCccch--hhhhhhhhccc-cchhhhhhhhhhcccccccccccccccccc-----CCCccccccccccCccccc
Confidence            999888888643  45788888887 567777766666777788887766643211     1233456777888888888


Q ss_pred             cCCCccCCc
Q 005744          390 IPDAQVMPQ  398 (679)
Q Consensus       390 ~~~~~~~~~  398 (679)
                      .+.+..++.
T Consensus       159 ~n~l~~l~~  167 (305)
T d1xkua_         159 DTNITTIPQ  167 (305)
T ss_dssp             SSCCCSCCS
T ss_pred             cCCccccCc
Confidence            776655543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.78  E-value=4.4e-19  Score=177.86  Aligned_cols=60  Identities=17%  Similarity=0.080  Sum_probs=38.3

Q ss_pred             hhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccc
Q 005744          446 LKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLI  512 (679)
Q Consensus       446 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  512 (679)
                      +++|+.|++++|.....+|..+   +.+++|++|+|++|.....+    +..+.+++|+.+.+.+.+
T Consensus       243 ~~~L~~L~Ls~N~l~g~iP~~l---~~L~~L~~L~Ls~N~l~g~i----P~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         243 SKNLNGLDLRNNRIYGTLPQGL---TQLKFLHSLNVSFNNLCGEI----PQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CTTCCEEECCSSCCEECCCGGG---GGCTTCCEEECCSSEEEEEC----CCSTTGGGSCGGGTCSSS
T ss_pred             ccccccccCccCeecccCChHH---hCCCCCCEEECcCCcccccC----CCcccCCCCCHHHhCCCc
Confidence            4667777777776655677766   67777888888777422122    223456677777776643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.78  E-value=5.9e-19  Score=176.96  Aligned_cols=243  Identities=16%  Similarity=0.128  Sum_probs=169.2

Q ss_pred             CCCeEEEccCCCcc---cCCccc-CCcceeeeeecc-CCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCC
Q 005744          210 EAPTAISIPFRGIY---ELPERL-GFLKLKLFLFFT-ENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLR  283 (679)
Q Consensus       210 ~~l~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~  283 (679)
                      .+++.|+++++.+.   .+|..+ .+++|++|++++ |.+.+.+|..+ +++++|++|++++|.+..+ |..+..+.+|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc-ccccccchhhhccccccccccccccchhhhc
Confidence            46777888887774   466666 778888888875 66777777765 7788888888888877754 55577777888


Q ss_pred             EEEcCCcccCC--cccccCCCCCcEEEecCCCCC-ccchhhhcCCCC-CEEcccCCccccccCcccccCCCCCcEEEccC
Q 005744          284 TLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCL-KLLDLSNCSKLKEIRPNVISNLTRLEELYMGN  359 (679)
Q Consensus       284 ~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L-~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~  359 (679)
                      ++++++|.+..  |..++++++|+++++++|.+. .+|..+..+.++ +.+++++ +.+...++..++.+..+ .+++..
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~-n~l~~~~~~~~~~l~~~-~l~l~~  206 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPPTFANLNLA-FVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS-SEEEEECCGGGGGCCCS-EEECCS
T ss_pred             ccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccc-ccccccccccccccccc-cccccc
Confidence            88888777655  677788888888888887766 677777777765 6677766 45554444445555433 566666


Q ss_pred             CcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcc-ee
Q 005744          360 SFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNST-YL  438 (679)
Q Consensus       360 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~-~~  438 (679)
                      +....       .....+..+++|+.++++.+.+...+.                   .+..+++++.|+|+++... .+
T Consensus       207 ~~~~~-------~~~~~~~~~~~l~~l~~~~~~l~~~~~-------------------~~~~~~~L~~L~Ls~N~l~g~i  260 (313)
T d1ogqa_         207 NMLEG-------DASVLFGSDKNTQKIHLAKNSLAFDLG-------------------KVGLSKNLNGLDLRNNRIYGTL  260 (313)
T ss_dssp             SEEEE-------CCGGGCCTTSCCSEEECCSSEECCBGG-------------------GCCCCTTCCEEECCSSCCEECC
T ss_pred             ccccc-------ccccccccccccccccccccccccccc-------------------ccccccccccccCccCeecccC
Confidence            54432       223444566677777776665433222                   2345667778888887766 67


Q ss_pred             chhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCC
Q 005744          439 GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPE  486 (679)
Q Consensus       439 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  486 (679)
                      |.++.. +++|++|++++|.....+|. +   +.+++|+.+++.+|+.
T Consensus       261 P~~l~~-L~~L~~L~Ls~N~l~g~iP~-~---~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         261 PQGLTQ-LKFLHSLNVSFNNLCGEIPQ-G---GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CGGGGG-CTTCCEEECCSSEEEEECCC-S---TTGGGSCGGGTCSSSE
T ss_pred             ChHHhC-CCCCCEEECcCCcccccCCC-c---ccCCCCCHHHhCCCcc
Confidence            888877 79999999999886656764 4   6789999999999974

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=9.2e-18  Score=163.59  Aligned_cols=190  Identities=21%  Similarity=0.219  Sum_probs=145.5

Q ss_pred             CCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCC
Q 005744          210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN  289 (679)
Q Consensus       210 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~  289 (679)
                      .....++.+++++..+|..+. +++++|++++|.+. .+|...|.++++|++|++++|.++.+|. ++.+++|++|++++
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp-~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSH   86 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCS
T ss_pred             CCCeEEEccCCCCCeeCcCcC-cCCCEEECcCCcCC-CcCHHHhhcccccccccccccccccccc-cccccccccccccc
Confidence            345566777888888887552 57888888888876 5666667888889999999888888764 57788899999988


Q ss_pred             cccCC-cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744          290 CLVVD-VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE  367 (679)
Q Consensus       290 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (679)
                      |.+.. +..+.++++|++|+++++.+..++. .+..+.++++|++.+ +.++.+|+..+..+++|+.|++++|.+...  
T Consensus        87 N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~-n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~--  163 (266)
T d1p9ag_          87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTEL--  163 (266)
T ss_dssp             SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSCC--
T ss_pred             ccccccccccccccccccccccccccceeeccccccccccccccccc-cccceeccccccccccchhccccccccccc--
Confidence            88887 7788888889999998888776654 456788888888888 677888887777888899999888876532  


Q ss_pred             cCCcCChhhhhcCCCCceEEeecCCCccCCccc-cccccceeEE
Q 005744          368 GQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRI  410 (679)
Q Consensus       368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l  410 (679)
                           ....+..+++|++|++++|.+..+|..+ .+++|+.|++
T Consensus       164 -----~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L  202 (266)
T d1p9ag_         164 -----PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL  202 (266)
T ss_dssp             -----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred             -----CccccccccccceeecccCCCcccChhHCCCCCCCEEEe
Confidence                 2244677888888999888888887665 4445555444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=2.6e-17  Score=164.18  Aligned_cols=60  Identities=18%  Similarity=0.145  Sum_probs=32.5

Q ss_pred             hhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCC----ccccccccceeeccc
Q 005744          446 LKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDG----RVGTFPLLESLFLHN  510 (679)
Q Consensus       446 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~----~~~~~~~L~~L~l~~  510 (679)
                      +++|++|++++|. ++.+|..+   ..+++|++|++++|. ++.+.....    .....++|+.|++.+
T Consensus       218 l~~L~~L~L~~N~-L~~lp~~l---~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~  281 (305)
T d1xkua_         218 TPHLRELHLNNNK-LVKVPGGL---ADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFS  281 (305)
T ss_dssp             STTCCEEECCSSC-CSSCCTTT---TTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred             cccceeeeccccc-cccccccc---ccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECCC
Confidence            5666667776663 34555555   566777777777663 444322110    112345566666665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=1.9e-16  Score=161.28  Aligned_cols=137  Identities=20%  Similarity=0.279  Sum_probs=101.8

Q ss_pred             CCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCC
Q 005744          210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN  289 (679)
Q Consensus       210 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~  289 (679)
                      .++++|+++++.++.+|+  ..++|++|++++|.+. .+|.    .+.+|+.|++++|+++.++.-.   +.|++|++++
T Consensus        38 ~~l~~LdLs~~~L~~lp~--~~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~~l~~lp---~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE--LPPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS--CCTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCCSCC---TTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCCCCC--CCCCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccchhhhhc---cccccccccc
Confidence            468899999999998886  3578999999988876 6775    3568899999999888776421   4689999999


Q ss_pred             cccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcc
Q 005744          290 CLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT  362 (679)
Q Consensus       290 ~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~  362 (679)
                      |.+...+.++.+++|++|+++++.+...|..   ...+..+.+..+. ....  ..++.++.++.+++.++..
T Consensus       108 n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~-~~~~--~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         108 NQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQ-LEEL--PELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             SCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSC--CCCTTCTTCCEEECCSSCC
T ss_pred             cccccccchhhhccceeeccccccccccccc---cccccchhhcccc-cccc--ccccccccceecccccccc
Confidence            9888844578889999999998888877654   3455666665532 2222  2267788888888887754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.7e-17  Score=163.56  Aligned_cols=196  Identities=21%  Similarity=0.328  Sum_probs=158.9

Q ss_pred             EecccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeC-CCcCCc
Q 005744          195 IQNVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLT-GFRFHS  271 (679)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~-~~~l~~  271 (679)
                      ...+..++.+|...+..++.|++++|.++.+|.. + ++++|++|++++|.+. .++...+..+..++.++.. .+.++.
T Consensus        17 ~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~~~~~~~   95 (284)
T d1ozna_          17 SCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRS   95 (284)
T ss_dssp             ECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred             EcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-cccccccccccccccccccccccccc
Confidence            4556667788877778899999999999888864 3 8899999999988876 4555566888889988776 455777


Q ss_pred             C-CccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCccccc
Q 005744          272 L-PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVIS  347 (679)
Q Consensus       272 l-p~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~  347 (679)
                      + |..+.++++|++|++++|.+..  +..++...+|+++++++|.++.+|. .+..+++|++|++++ +.++.+++..+.
T Consensus        96 l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~-N~l~~l~~~~f~  174 (284)
T d1ozna_          96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFR  174 (284)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTT
T ss_pred             ccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhccccc-Ccccccchhhhc
Confidence            6 6678899999999999998876  5678888999999999999998875 467889999999998 578888888788


Q ss_pred             CCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCcc
Q 005744          348 NLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQD  399 (679)
Q Consensus       348 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  399 (679)
                      .+++|+++++++|.+....       ...+..+++|++|+++.|.+..++..
T Consensus       175 ~l~~L~~l~l~~N~l~~i~-------~~~f~~l~~L~~L~l~~N~i~~~~~~  219 (284)
T d1ozna_         175 GLHSLDRLLLHQNRVAHVH-------PHAFRDLGRLMTLYLFANNLSALPTE  219 (284)
T ss_dssp             TCTTCCEEECCSSCCCEEC-------TTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred             cccccchhhhhhccccccC-------hhHhhhhhhccccccccccccccccc
Confidence            9999999999998776432       34677788999999999888776654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=9.4e-18  Score=163.52  Aligned_cols=187  Identities=18%  Similarity=0.186  Sum_probs=162.1

Q ss_pred             ecccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC
Q 005744          196 QNVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP  273 (679)
Q Consensus       196 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp  273 (679)
                      +.+..++.+|...++++++|++++|.+..++.. + .+++|++|++++|.+. .+|.  ++.+++|++|++++|+++..|
T Consensus        17 C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~--~~~l~~L~~L~Ls~N~l~~~~   93 (266)
T d1p9ag_          17 CDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHNQLQSLP   93 (266)
T ss_dssp             CTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTCCEEECCSSCCSSCC
T ss_pred             ccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc--ccccccccccccccccccccc
Confidence            455667778877778999999999999988864 3 8999999999999886 5554  478999999999999999999


Q ss_pred             ccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCC
Q 005744          274 SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLT  350 (679)
Q Consensus       274 ~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~  350 (679)
                      ..+..+++|++|+++++.+..  +..+..+.++++|++++|.++.+|.. +..+++|++|++++ +.++.++++.++.++
T Consensus        94 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~-N~l~~~~~~~~~~l~  172 (266)
T d1p9ag_          94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLE  172 (266)
T ss_dssp             CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCT
T ss_pred             cccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccc-ccccccCcccccccc
Confidence            999999999999999999887  67788999999999999999998875 56789999999999 688999988899999


Q ss_pred             CCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCc
Q 005744          351 RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ  394 (679)
Q Consensus       351 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  394 (679)
                      +|++|++++|.+..        ....+..+++|+.|++++|...
T Consensus       173 ~L~~L~Ls~N~L~~--------lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         173 NLDTLLLQENSLYT--------IPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TCCEEECCSSCCCC--------CCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccceeecccCCCcc--------cChhHCCCCCCCEEEecCCCCC
Confidence            99999999998762        2345667889999999998653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=2e-16  Score=161.03  Aligned_cols=302  Identities=19%  Similarity=0.127  Sum_probs=182.5

Q ss_pred             cceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCCcccccCCCCCcEEEecC
Q 005744          232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKH  311 (679)
Q Consensus       232 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~  311 (679)
                      .++++|+++++.++ .+|+    ..++|++|++++|+++++|..+   .+|+.|++++|.+...+.+.  ..|++|++++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDLP--PLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSCC--TTCCEEECCS
T ss_pred             cCCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhhc--cccccccccc
Confidence            46889999999876 6885    3578999999999999999764   57899999999887733332  4699999999


Q ss_pred             CCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecC
Q 005744          312 SSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIP  391 (679)
Q Consensus       312 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  391 (679)
                      |.+..+|. ++.+++|++|++++ +.+...+..    ...+..+.+..+...         ....+..++.++.+.++.+
T Consensus       108 n~l~~lp~-~~~l~~L~~L~l~~-~~~~~~~~~----~~~l~~l~~~~~~~~---------~~~~l~~l~~l~~L~l~~n  172 (353)
T d1jl5a_         108 NQLEKLPE-LQNSSFLKIIDVDN-NSLKKLPDL----PPSLEFIAAGNNQLE---------ELPELQNLPFLTAIYADNN  172 (353)
T ss_dssp             SCCSSCCC-CTTCTTCCEEECCS-SCCSCCCCC----CTTCCEEECCSSCCS---------SCCCCTTCTTCCEEECCSS
T ss_pred             cccccccc-hhhhccceeecccc-ccccccccc----cccccchhhcccccc---------ccccccccccceecccccc
Confidence            99999985 78899999999998 455555543    356677776655432         2234667788899999888


Q ss_pred             CCccCCccccccccceeEEEeCC--cccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCcccccccccc
Q 005744          392 DAQVMPQDLVFVELERFRICIGD--VWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDD  469 (679)
Q Consensus       392 ~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  469 (679)
                      .....+...  ...+.+......  .......++.++.+.++.+.....+..    ..++..+.+.++... ..+     
T Consensus       173 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~----~~~l~~~~~~~~~~~-~~~-----  240 (353)
T d1jl5a_         173 SLKKLPDLP--LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLT-DLP-----  240 (353)
T ss_dssp             CCSSCCCCC--TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSC----CTTCCEEECCSSCCS-CCC-----
T ss_pred             ccccccccc--ccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccc-ccc-----
Confidence            766554432  112222221111  111234455666666666554444332    234444444443321 111     


Q ss_pred             hhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccc
Q 005744          470 EEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLF  549 (679)
Q Consensus       470 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~  549 (679)
                       ...+.+....+..+.. ..+..      .........+.. ..+..+          ...+++|++|++++| +++.+|
T Consensus       241 -~~~~~l~~~~~~~~~~-~~l~~------l~~~~~~~~~~~-~~~~~~----------~~~~~~L~~L~Ls~N-~l~~lp  300 (353)
T d1jl5a_         241 -ELPQSLTFLDVSENIF-SGLSE------LPPNLYYLNASS-NEIRSL----------CDLPPSLEELNVSNN-KLIELP  300 (353)
T ss_dssp             -CCCTTCCEEECCSSCC-SEESC------CCTTCCEEECCS-SCCSEE----------CCCCTTCCEEECCSS-CCSCCC
T ss_pred             -cccccccccccccccc-ccccc------ccchhccccccc-Cccccc----------cccCCCCCEEECCCC-ccCccc
Confidence             1123333333333221 01100      011112222222 122221          134578888888885 677775


Q ss_pred             cHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCcccccc
Q 005744          550 PFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGF  613 (679)
Q Consensus       550 ~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~  613 (679)
                      .     .+++|+.|++++| .+++++.                .+++|++|++++|+ |+++|.
T Consensus       301 ~-----~~~~L~~L~L~~N-~L~~l~~----------------~~~~L~~L~L~~N~-L~~lp~  341 (353)
T d1jl5a_         301 A-----LPPRLERLIASFN-HLAEVPE----------------LPQNLKQLHVEYNP-LREFPD  341 (353)
T ss_dssp             C-----CCTTCCEEECCSS-CCSCCCC----------------CCTTCCEEECCSSC-CSSCCC
T ss_pred             c-----ccCCCCEEECCCC-cCCcccc----------------ccCCCCEEECcCCc-CCCCCc
Confidence            3     2578888888776 5666652                35678888888875 777654

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.69  E-value=1e-17  Score=163.11  Aligned_cols=100  Identities=13%  Similarity=0.027  Sum_probs=88.2

Q ss_pred             CceeccCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHhhccCCCcccc
Q 005744            8 EDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRKIQG   87 (679)
Q Consensus         8 ~~~~~~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~W~~~~~~l~~~~~~~~~~   87 (679)
                      ++|+|++|+.+|||+||++++|.....+..++++++||++|+|+||||+++|+.|+.++.+.|.+..+.++....     
T Consensus       178 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~~-----  252 (277)
T d2a5yb3         178 EFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGL-----  252 (277)
T ss_dssp             EEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCS-----
T ss_pred             ceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCcH-----
Confidence            689999999999999999999977667778999999999999999999999999999999999999998875432     


Q ss_pred             cccccceeeeccccCChhhHHHHHHhc
Q 005744           88 MDADLSSIELSYEFLKCKEVKSLFQLC  114 (679)
Q Consensus        88 ~~~~~~~l~~SY~~L~~~~lk~cfl~~  114 (679)
                       .....++.+||++||.+ +|+||-++
T Consensus       253 -~~v~~il~~sY~~L~~~-lk~c~~~l  277 (277)
T d2a5yb3         253 -VGVECITPYSYKSLAMA-LQRCVEVL  277 (277)
T ss_dssp             -STTCCCSSSSSSSHHHH-HHHHHHTS
T ss_pred             -HHHHHHHHHHHhcccHH-HHHHHHhC
Confidence             33488999999999999 99999763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.6e-16  Score=145.29  Aligned_cols=165  Identities=25%  Similarity=0.322  Sum_probs=133.7

Q ss_pred             cCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcC
Q 005744          209 DEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLE  288 (679)
Q Consensus       209 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~  288 (679)
                      ..++++++++++.+..++..-.+++|++|++++|.+.+ ++.  ++.+++|++|++++|.++.+| .+..+++|++|+++
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~-l~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECT
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccC-ccc--cccCccccccccccccccccc-cccccccccccccc
Confidence            45789999999998887754478899999999988763 443  478899999999999988887 48888999999999


Q ss_pred             CcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceecc
Q 005744          289 NCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG  368 (679)
Q Consensus       289 ~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~  368 (679)
                      +|.+..+..+..+++|+.+++++|.++.++ .+..+++|+++++++ +.+..+++  ++++++|++|++++|.+.     
T Consensus       121 ~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~-n~l~~i~~--l~~l~~L~~L~Ls~N~i~-----  191 (210)
T d1h6ta2         121 HNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHIS-----  191 (210)
T ss_dssp             TSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCC-----
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccccccc-cccccccc--ccCCCCCCEEECCCCCCC-----
Confidence            988877777888899999999998888765 477888999999988 46777764  788899999999888763     


Q ss_pred             CCcCChhhhhcCCCCceEEeec
Q 005744          369 QSNASLGELKQLSRLTTLEVHI  390 (679)
Q Consensus       369 ~~~~~~~~l~~l~~L~~L~l~~  390 (679)
                          .+..+.++++|+.|++++
T Consensus       192 ----~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 ----DLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             ----BCGGGTTCTTCSEEEEEE
T ss_pred             ----CChhhcCCCCCCEEEccC
Confidence                234678888888888864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=7.9e-16  Score=142.43  Aligned_cols=162  Identities=23%  Similarity=0.344  Sum_probs=124.0

Q ss_pred             hcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEc
Q 005744          208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL  287 (679)
Q Consensus       208 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L  287 (679)
                      ...+++.|+++++.+..++..-.+++|++|++++|.+.+ +++  ++++++|++|++++|.+..++. +.++++|++|++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~-~~~--l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l  113 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL  113 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEC
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccC-ccc--ccCCcccccccccccccccccc-cccccccccccc
Confidence            356788899988888777654478888888888887763 443  5788888888888888877764 778888888888


Q ss_pred             CCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744          288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE  367 (679)
Q Consensus       288 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (679)
                      ++|.......+..+++|++|++++|.+..+| .+..+++|++|++.+ +.++.+++  ++++++|++|++++|.+.    
T Consensus       114 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~-n~l~~l~~--l~~l~~L~~L~ls~N~i~----  185 (199)
T d2omxa2         114 FNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSS-NQVTDLKP--LANLTTLERLDISSNKVS----  185 (199)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred             cccccccccccchhhhhHHhhhhhhhhcccc-ccccccccccccccc-ccccCCcc--ccCCCCCCEEECCCCCCC----
Confidence            8888777667888888888888888887776 477888888888887 46777764  778888888888888653    


Q ss_pred             cCCcCChhhhhcCCCCceE
Q 005744          368 GQSNASLGELKQLSRLTTL  386 (679)
Q Consensus       368 ~~~~~~~~~l~~l~~L~~L  386 (679)
                           .+..++++++|+.|
T Consensus       186 -----~i~~l~~L~~L~~L  199 (199)
T d2omxa2         186 -----DISVLAKLTNLESL  199 (199)
T ss_dssp             -----CCGGGGGCTTCSEE
T ss_pred             -----CCccccCCCCCCcC
Confidence                 23456667777654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=5.2e-16  Score=143.66  Aligned_cols=176  Identities=18%  Similarity=0.278  Sum_probs=142.7

Q ss_pred             EccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCCc
Q 005744          216 SIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV  295 (679)
Q Consensus       216 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~  295 (679)
                      .+..+.+........++++++|+++++.+. .++.  ++.+++|++|++++|.++.++. ++++++|++|++++|.+...
T Consensus        24 ~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~-~l~~--l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~   99 (199)
T d2omxa2          24 VLGKTNVTDTVSQTDLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI   99 (199)
T ss_dssp             HTTCSSTTSEECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred             HhCCCCCCCccCHHHhcCCCEEECCCCCCC-Cccc--cccCCCcCcCccccccccCccc-ccCCcccccccccccccccc
Confidence            344455544433336789999999999876 4543  5889999999999999998875 89999999999999998886


Q ss_pred             ccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChh
Q 005744          296 AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLG  375 (679)
Q Consensus       296 ~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  375 (679)
                      +.++++++|++|+++++.+..++ .+..+++|+.|++++ +.+..++.  +..+++|+.|++.+|.+.         .+.
T Consensus       100 ~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~-n~l~~~~~--l~~~~~L~~L~l~~n~l~---------~l~  166 (199)
T d2omxa2         100 TPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSS-NTISDISA--LSGLTSLQQLNFSSNQVT---------DLK  166 (199)
T ss_dssp             GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCS-SCCCCCGG--GTTCTTCSEEECCSSCCC---------CCG
T ss_pred             ccccccccccccccccccccccc-ccchhhhhHHhhhhh-hhhccccc--cccccccccccccccccc---------CCc
Confidence            67999999999999999888765 488999999999998 56777654  889999999999998764         234


Q ss_pred             hhhcCCCCceEEeecCCCccCCcccccccccee
Q 005744          376 ELKQLSRLTTLEVHIPDAQVMPQDLVFVELERF  408 (679)
Q Consensus       376 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L  408 (679)
                      .++++++|+.|++++|.+..++.-..+++|+.|
T Consensus       167 ~l~~l~~L~~L~ls~N~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         167 PLANLTTLERLDISSNKVSDISVLAKLTNLESL  199 (199)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             cccCCCCCCEEECCCCCCCCCccccCCCCCCcC
Confidence            688999999999999998877643366677654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.3e-15  Score=148.03  Aligned_cols=173  Identities=18%  Similarity=0.280  Sum_probs=120.9

Q ss_pred             EEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCC-cc
Q 005744          214 AISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLEN-CL  291 (679)
Q Consensus       214 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~-~~  291 (679)
                      .+..++..+..+|..+. +.+++|++++|.+. .+|...|.++++|++|++++|.+..+ +..+..+..++.+.... +.
T Consensus        15 ~v~c~~~~L~~iP~~ip-~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP-AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EEECCSSCCSSCCTTCC-TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEEcCCCCCCccCCCCC-CCCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            45566667777776542 46788888888776 66666668888888888888887765 34456677788777654 34


Q ss_pred             cCC--cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceecc
Q 005744          292 VVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG  368 (679)
Q Consensus       292 ~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~  368 (679)
                      +..  +..++++++|++|++++|.+..++. .+..+.+|+.+++++ +.++.+|+..+..+++|++|++++|.+....  
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~--  169 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSVP--  169 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEEC--
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcc-ccccccChhHhccccchhhcccccCcccccc--
Confidence            444  5667888888888888887776544 456677888888887 6777777766777788888888887664322  


Q ss_pred             CCcCChhhhhcCCCCceEEeecCCCccC
Q 005744          369 QSNASLGELKQLSRLTTLEVHIPDAQVM  396 (679)
Q Consensus       369 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~  396 (679)
                           ...+..+++|+.+.++.|.+..+
T Consensus       170 -----~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         170 -----ERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             -----TTTTTTCTTCCEEECCSSCCCEE
T ss_pred             -----hhhhccccccchhhhhhcccccc
Confidence                 23456677777777777765543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.5e-15  Score=141.86  Aligned_cols=165  Identities=23%  Similarity=0.319  Sum_probs=138.4

Q ss_pred             CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCCcccccCCCCCcEEEe
Q 005744          230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL  309 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l  309 (679)
                      .+..|+.|+++++.+. .++.  +..+++|++|++++|.++.++. ++.+++|++|++++|.+...+.+..+++|++|++
T Consensus        44 ~L~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCCCC-Cchh--HhhCCCCCEEeCCCccccCccc-cccCcccccccccccccccccccccccccccccc
Confidence            4678999999998876 3443  4789999999999999998874 7899999999999999988667999999999999


Q ss_pred             cCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEee
Q 005744          310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH  389 (679)
Q Consensus       310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  389 (679)
                      ++|.+..++ .+..+++|+.+++++ +.++..+.  ++++++|+++++++|.+.         .+..+.++++|+.|+++
T Consensus       120 ~~~~~~~~~-~l~~l~~l~~l~~~~-n~l~~~~~--~~~l~~L~~l~l~~n~l~---------~i~~l~~l~~L~~L~Ls  186 (210)
T d1h6ta2         120 EHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQIS---------DIVPLAGLTKLQNLYLS  186 (210)
T ss_dssp             TTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSCCC---------CCGGGTTCTTCCEEECC
T ss_pred             ccccccccc-ccccccccccccccc-cccccccc--cccccccccccccccccc---------ccccccCCCCCCEEECC
Confidence            999988876 588999999999988 56666554  678999999999999763         23458889999999999


Q ss_pred             cCCCccCCccccccccceeEEE
Q 005744          390 IPDAQVMPQDLVFVELERFRIC  411 (679)
Q Consensus       390 ~~~~~~~~~~~~~~~L~~L~l~  411 (679)
                      +|.+..++.-..+++|+.|+++
T Consensus       187 ~N~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         187 KNHISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             SSCCCBCGGGTTCTTCSEEEEE
T ss_pred             CCCCCCChhhcCCCCCCEEEcc
Confidence            9998887643377788888775

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=4e-15  Score=140.90  Aligned_cols=188  Identities=18%  Similarity=0.268  Sum_probs=155.9

Q ss_pred             hhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEE
Q 005744          207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS  286 (679)
Q Consensus       207 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  286 (679)
                      ....+++.+++.++.+..++....+++|++|++++|.+.+ +++  +..+++|+++++++|.++.++ .+.++++|++++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~-~~~--l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~  113 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD-LAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD  113 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred             HHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeec-ccc--ccccccccccccccccccccc-cccccccccccc
Confidence            3456899999999999988654489999999999998874 333  589999999999999998876 588999999999


Q ss_pred             cCCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccccee
Q 005744          287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV  366 (679)
Q Consensus       287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~  366 (679)
                      ++++.......+.....++.+.++++.+...+ .+...++|++|++.+ +.+...++  ++++++|++|++++|.+.   
T Consensus       114 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~-n~~~~~~~--l~~l~~L~~L~Ls~n~l~---  186 (227)
T d1h6ua2         114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGN-AQVSDLTP--LANLSKLTTLKADDNKIS---  186 (227)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred             cccccccccchhccccchhhhhchhhhhchhh-hhccccccccccccc-cccccchh--hcccccceecccCCCccC---
Confidence            99998887777888999999999999887665 378889999999998 45555544  789999999999999763   


Q ss_pred             ccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEE
Q 005744          367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRIC  411 (679)
Q Consensus       367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  411 (679)
                            .+..+.++++|++|++++|.+..++.-..+++|+.|++.
T Consensus       187 ------~l~~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         187 ------DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             ------CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred             ------CChhhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEee
Confidence                  244688899999999999998887753367777777764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=2.5e-15  Score=142.32  Aligned_cols=184  Identities=21%  Similarity=0.283  Sum_probs=135.5

Q ss_pred             CCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCC
Q 005744          210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN  289 (679)
Q Consensus       210 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~  289 (679)
                      +++..+++..+++..+....++.+|+.|.+.+|.+. .++ . +..+++|++|++++|.++.++. +.++++|+++++++
T Consensus        19 ~~~~~~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~-~l~-~-l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          19 ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG   94 (227)
T ss_dssp             HHHHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCS
T ss_pred             HHHHHHHhCCCCcCCcCCHHHcCCcCEEECCCCCCC-cch-h-HhcCCCCcEeecCCceeecccc-cccccccccccccc
Confidence            334445555555554433336888999999998876 454 3 5889999999999999887754 88899999999999


Q ss_pred             cccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccC
Q 005744          290 CLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ  369 (679)
Q Consensus       290 ~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~  369 (679)
                      |.+...+.+.++++|++++++++....++. +...+.++.+.+.++ .+...+.  +.+.++|++|++.+|.+.      
T Consensus        95 n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~~~--~~~~~~L~~L~l~~n~~~------  164 (227)
T d1h6ua2          95 NPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVS------  164 (227)
T ss_dssp             CCCSCCGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCC------
T ss_pred             ccccccccccccccccccccccccccccch-hccccchhhhhchhh-hhchhhh--hccccccccccccccccc------
Confidence            988887788899999999999887776653 677888899988774 4444433  677889999999888653      


Q ss_pred             CcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEE
Q 005744          370 SNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRI  410 (679)
Q Consensus       370 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  410 (679)
                         ....+.++++|+.|++++|.+..++.-..+++|+.|++
T Consensus       165 ---~~~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~L  202 (227)
T d1h6ua2         165 ---DLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHL  202 (227)
T ss_dssp             ---CCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEEC
T ss_pred             ---cchhhcccccceecccCCCccCCChhhcCCCCCCEEEC
Confidence               23457788899999999888776654224444444444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.9e-15  Score=145.16  Aligned_cols=83  Identities=24%  Similarity=0.374  Sum_probs=41.5

Q ss_pred             CCcCCCEEEcCCcccCC---cccccCCCCCcEEEecCCCCC-ccchhhhcCCCCCEEcccCCccccccCc-ccccCCCCC
Q 005744          278 CLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRL  352 (679)
Q Consensus       278 ~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~l~~l~~L  352 (679)
                      ....|++|++++|.+..   ...+.++++|++|++++|.++ ..+..++++++|++|++++|+.+++..- .....+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            34456666666555443   233455556666666665544 3344455556666666665554443211 112234555


Q ss_pred             cEEEccCC
Q 005744          353 EELYMGNS  360 (679)
Q Consensus       353 ~~L~l~~~  360 (679)
                      ++|++++|
T Consensus       124 ~~L~ls~c  131 (284)
T d2astb2         124 DELNLSWC  131 (284)
T ss_dssp             CEEECCCC
T ss_pred             cccccccc
Confidence            55555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=5.8e-14  Score=118.02  Aligned_cols=81  Identities=26%  Similarity=0.338  Sum_probs=38.4

Q ss_pred             cCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCCcccccCCCCCcEEEecCCCCCccch--hhhcCCCCCEEc
Q 005744          254 EGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLD  331 (679)
Q Consensus       254 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~  331 (679)
                      ..+++|++|++++|.++.+|+.++.+++|++|++++|.+...+.++++++|++|++++|.++.+|.  .++.+++|++|+
T Consensus        17 ~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~   96 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN   96 (124)
T ss_dssp             GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             ccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCCCCchhhcCCCCCCEEE
Confidence            444445555555555554444444455555555555444443334444445555554444444432  234444444444


Q ss_pred             ccC
Q 005744          332 LSN  334 (679)
Q Consensus       332 l~~  334 (679)
                      +++
T Consensus        97 l~~   99 (124)
T d1dcea3          97 LQG   99 (124)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=1e-13  Score=116.46  Aligned_cols=101  Identities=23%  Similarity=0.272  Sum_probs=86.6

Q ss_pred             cEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccc
Q 005744          260 RVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKL  338 (679)
Q Consensus       260 ~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l  338 (679)
                      |+|++++|.++.++. +..+.+|++|++++|.+.. |+.++.+++|++|++++|.++.+| +++++++|++|++++ +.+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~-N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-NRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-SCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCC-Ccc
Confidence            689999999998874 8899999999999999988 778899999999999999999887 488999999999998 677


Q ss_pred             cccCc-ccccCCCCCcEEEccCCccc
Q 005744          339 KEIRP-NVISNLTRLEELYMGNSFTQ  363 (679)
Q Consensus       339 ~~lp~-~~l~~l~~L~~L~l~~~~~~  363 (679)
                      +.++. ..++.+++|++|++++|.+.
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCC
Confidence            77764 34788889999999888764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.1e-14  Score=142.63  Aligned_cols=99  Identities=23%  Similarity=0.267  Sum_probs=62.0

Q ss_pred             cEEEeCCCcCCcCCccccCC--cCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCC--ccchhhhcCCCCCEEcccC
Q 005744          260 RVLDLTGFRFHSLPSSLGCL--INLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIE--QLPREIGQLTCLKLLDLSN  334 (679)
Q Consensus       260 ~~L~l~~~~l~~lp~~i~~l--~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~  334 (679)
                      +.||++++.+.  |+.++.+  .....+.+..+.... ........+|++||+++|.++  .++..+..+++|++|++++
T Consensus         3 ~~lDLs~~~l~--~~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCC--chHHHHHHhccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            35677766543  1111111  134566666655555 344556678899999988776  3555677888899998888


Q ss_pred             CccccccCcccccCCCCCcEEEccCCc
Q 005744          335 CSKLKEIRPNVISNLTRLEELYMGNSF  361 (679)
Q Consensus       335 ~~~l~~lp~~~l~~l~~L~~L~l~~~~  361 (679)
                      |. +.......++++++|++|++++|.
T Consensus        81 ~~-l~~~~~~~l~~~~~L~~L~Ls~c~  106 (284)
T d2astb2          81 LR-LSDPIVNTLAKNSNLVRLNLSGCS  106 (284)
T ss_dssp             CB-CCHHHHHHHTTCTTCSEEECTTCB
T ss_pred             cC-CCcHHHHHHhcCCCCcCccccccc
Confidence            64 333222336778888888888763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.6e-13  Score=131.25  Aligned_cols=101  Identities=19%  Similarity=0.245  Sum_probs=48.8

Q ss_pred             cEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-c-ccccCCCCCcEEEecCCCCCc-cch-hhhcCCCCCEEcccCC
Q 005744          260 RVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQ-LPR-EIGQLTCLKLLDLSNC  335 (679)
Q Consensus       260 ~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~-lp~-~i~~L~~L~~L~l~~~  335 (679)
                      ++++.++..++.+|..+.  .++++|++++|.+.. + ..|.++++|++|++++|.+.. +|. .+..+++++++.+..+
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            344444444445544332  345555555555444 2 234555555555555554432 221 2445555555555444


Q ss_pred             ccccccCcccccCCCCCcEEEccCCcc
Q 005744          336 SKLKEIRPNVISNLTRLEELYMGNSFT  362 (679)
Q Consensus       336 ~~l~~lp~~~l~~l~~L~~L~l~~~~~  362 (679)
                      +.+..+++..+.++++|++|++.++.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l  115 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGI  115 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCC
T ss_pred             ccccccccccccccccccccccchhhh
Confidence            455555544455555555555555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.9e-14  Score=123.78  Aligned_cols=108  Identities=19%  Similarity=0.236  Sum_probs=55.9

Q ss_pred             cCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCCcccccCCCCCcEEEecCCCCCccchhh-hcCCCCCEEcc
Q 005744          254 EGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDL  332 (679)
Q Consensus       254 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l  332 (679)
                      .+...||.|+|++|.++.+|..+..+.+|++|++++|.+...+.+..+++|++|++++|+++.+|..+ ..+++|++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            34445555555555555555444455555555555555554444555555555555555555554432 34555555555


Q ss_pred             cCCccccccCc-ccccCCCCCcEEEccCCcc
Q 005744          333 SNCSKLKEIRP-NVISNLTRLEELYMGNSFT  362 (679)
Q Consensus       333 ~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~  362 (679)
                      ++ +.++.++. ..+..+++|++|++++|.+
T Consensus        95 ~~-N~i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          95 TN-NSLVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             CS-CCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             cc-ccccccccccccccccccchhhcCCCcc
Confidence            55 34444432 2244555555555555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.45  E-value=6e-14  Score=128.68  Aligned_cols=121  Identities=21%  Similarity=0.315  Sum_probs=74.9

Q ss_pred             eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcc
Q 005744          213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL  291 (679)
Q Consensus       213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~  291 (679)
                      +.++.+++++..+|..+ .+++++|++++|.+...++...|.++++|+.|++++|.+..+ +..+..+++|++|++++|+
T Consensus        11 ~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            35666666666666644 246666666666665445555556666666666666666654 3455666666666666666


Q ss_pred             cCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccC
Q 005744          292 VVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSN  334 (679)
Q Consensus       292 ~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~  334 (679)
                      +..  +..|.++++|++|+|++|.|+.+|.+ +..+++|++|++++
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccc
Confidence            665  34566666666666666666666543 45666666666665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.7e-14  Score=124.88  Aligned_cols=129  Identities=16%  Similarity=0.170  Sum_probs=89.1

Q ss_pred             cCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-ccc-ccCC
Q 005744          224 ELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAI-IGDL  301 (679)
Q Consensus       224 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~-i~~L  301 (679)
                      ..+...+..++|.|++++|.+. .++. .+..+++|++|++++|.++.++ .+..+++|++|++++|.+.. ++. +..+
T Consensus        10 ~~~~~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l   86 (162)
T d1a9na_          10 QAAQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQAL   86 (162)
T ss_dssp             TSCEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             hhHhccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccc
Confidence            3444445667777777777765 4543 3466778888888888877774 47777888888888888777 433 4567


Q ss_pred             CCCcEEEecCCCCCccch--hhhcCCCCCEEcccCCccccccCc---ccccCCCCCcEEE
Q 005744          302 KKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRP---NVISNLTRLEELY  356 (679)
Q Consensus       302 ~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~---~~l~~l~~L~~L~  356 (679)
                      ++|++|++++|.++.++.  .+..+++|++|++++ +.++..|.   ..++.+++|+.|+
T Consensus        87 ~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~-N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          87 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccceeccccccccccccccccccccchhhcCC-CccccccchHHHHHHHCCCcCeeC
Confidence            888888888887777664  467778888888887 44555552   2356677777776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.4e-13  Score=127.38  Aligned_cols=195  Identities=16%  Similarity=0.177  Sum_probs=136.5

Q ss_pred             ecccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCC-CcCCcC
Q 005744          196 QNVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTG-FRFHSL  272 (679)
Q Consensus       196 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~l  272 (679)
                      ..+..++.+|...+.+++.|++++|.+..++.. + ++++|++|++++|.+...++...|.+++.++++.+.. +.+..+
T Consensus        15 c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~   94 (242)
T d1xwdc1          15 CQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI   94 (242)
T ss_dssp             EESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEE
T ss_pred             EeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccc
Confidence            334456666766667889999999988888764 3 7889999999988877667776678888888888765 456554


Q ss_pred             -CccccCCcCCCEEEcCCcccCCc---ccccCCCCCcEEEecCCCCCccch-hhhcCC-CCCEEcccCCccccccCcccc
Q 005744          273 -PSSLGCLINLRTLSLENCLVVDV---AIIGDLKKLEILSLKHSSIEQLPR-EIGQLT-CLKLLDLSNCSKLKEIRPNVI  346 (679)
Q Consensus       273 -p~~i~~l~~L~~L~L~~~~~~~~---~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~-~L~~L~l~~~~~l~~lp~~~l  346 (679)
                       +..+.++++|++|++++|.+..+   ..+..++.+..+...++.+..++. .+..+. .++.|++.+ +.++.++.. .
T Consensus        95 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~~-~  172 (242)
T d1xwdc1          95 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNC-A  172 (242)
T ss_dssp             CTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT-T
T ss_pred             ccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccc-ccccccccc-c
Confidence             56678888999999988887763   234455666666666667777654 344443 677888877 677777776 3


Q ss_pred             cCCCCCcEEE-ccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCcc
Q 005744          347 SNLTRLEELY-MGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQD  399 (679)
Q Consensus       347 ~~l~~L~~L~-l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  399 (679)
                      .+..+++.+. +.++.+...       ....+.++++|+.|++++|.+..+|..
T Consensus       173 ~~~~~l~~~~~l~~n~l~~l-------~~~~f~~l~~L~~L~Ls~N~l~~l~~~  219 (242)
T d1xwdc1         173 FNGTQLDELNLSDNNNLEEL-------PNDVFHGASGPVILDISRTRIHSLPSY  219 (242)
T ss_dssp             TTTCCEEEEECTTCTTCCCC-------CTTTTTTSCCCSEEECTTSCCCCCCSS
T ss_pred             ccchhhhccccccccccccc-------cHHHhcCCCCCCEEECCCCcCCccCHH
Confidence            4555655554 455554321       113467788899999988888877765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.39  E-value=7.3e-13  Score=121.28  Aligned_cols=123  Identities=18%  Similarity=0.204  Sum_probs=88.0

Q ss_pred             eeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCc-C-CccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEec
Q 005744          235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS-L-PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLK  310 (679)
Q Consensus       235 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l-p~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~  310 (679)
                      ++++.+++.+. .+|.++   .+++++|+|++|.++. + +..|.++++|++|++++|.+..  +..+..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            45667666665 677654   2567778888887764 3 3456777788888887777766  5667777778888888


Q ss_pred             CCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcc
Q 005744          311 HSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT  362 (679)
Q Consensus       311 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~  362 (679)
                      +|+++.+|.. |.++++|++|+|++ +.++.+|++.|..+++|++|++++|.+
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cccccccCHHHHhCCCcccccccCC-ccccccCHHHhcCCccccccccccccc
Confidence            8777777653 67777788888777 667777777677777777777777754

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=6.5e-14  Score=128.57  Aligned_cols=102  Identities=21%  Similarity=0.257  Sum_probs=48.0

Q ss_pred             CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCCcccccCCCCCcEEEe
Q 005744          230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL  309 (679)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l  309 (679)
                      .+++|++|++++|.+. .++.  +..+++|++|++++|.++.+|.....+++|++|++++|.+..++.+.++++|++|++
T Consensus        46 ~L~~L~~L~Ls~n~I~-~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L  122 (198)
T d1m9la_          46 TLKACKHLALSTNNIE-KISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM  122 (198)
T ss_dssp             HTTTCCEEECSEEEES-CCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEE
T ss_pred             cccccceeECcccCCC-Cccc--ccCCccccChhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4455555555554443 2322  344455555555555555444433334445555555554444333444455555555


Q ss_pred             cCCCCCccch--hhhcCCCCCEEcccC
Q 005744          310 KHSSIEQLPR--EIGQLTCLKLLDLSN  334 (679)
Q Consensus       310 ~~~~l~~lp~--~i~~L~~L~~L~l~~  334 (679)
                      ++|+++.++.  .+..+++|++|++++
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~L~~  149 (198)
T d1m9la_         123 SNNKITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred             ccchhccccccccccCCCccceeecCC
Confidence            5554444432  344444555555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.17  E-value=8.7e-13  Score=120.92  Aligned_cols=132  Identities=23%  Similarity=0.319  Sum_probs=99.4

Q ss_pred             hcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEc
Q 005744          253 FEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLD  331 (679)
Q Consensus       253 ~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~  331 (679)
                      +..+++|++|++++|.++.++ .+..+++|++|++++|.+.. +..+..+.+|++|++++|.++.++ .+..+++|++|+
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~  121 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY  121 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEE
T ss_pred             HhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-cccccccccccc
Confidence            478999999999999999886 58899999999999999888 555555678999999999998875 488899999999


Q ss_pred             ccCCccccccCc-ccccCCCCCcEEEccCCcccceeccCCcC---ChhhhhcCCCCceEE
Q 005744          332 LSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNA---SLGELKQLSRLTTLE  387 (679)
Q Consensus       332 l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~---~~~~l~~l~~L~~L~  387 (679)
                      +++ +.++.++. ..++.+++|+.|++++|.+..........   ...-+..+++|+.|+
T Consensus       122 L~~-N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         122 MSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ESE-EECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccc-chhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            998 56777653 33788999999999998764322110000   011256677777775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.5e-12  Score=136.83  Aligned_cols=66  Identities=14%  Similarity=0.048  Sum_probs=31.8

Q ss_pred             ccCCccEEEEecCCCccccccHHHHH----HhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCC
Q 005744          530 SFSNLRIIKVEGCHRVKHLFPFSLVK----NLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHL  605 (679)
Q Consensus       530 ~l~~L~~L~l~~c~~L~~l~~~~~~~----~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c  605 (679)
                      ..++|++|+++++ .+.+........    ..+.|++|++++| .+.......-        ...+...++|++|+|+++
T Consensus       338 ~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l--------~~~l~~~~~L~~L~Ls~N  407 (460)
T d1z7xw1         338 QNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSL--------AATLLANHSLRELDLSNN  407 (460)
T ss_dssp             HCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHH--------HHHHHHCCCCCEEECCSS
T ss_pred             cccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHH--------HHHHhcCCCCCEEECCCC
Confidence            3456777777764 444321111111    2345777777777 4443111000        002345577777777764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=5.8e-12  Score=132.25  Aligned_cols=379  Identities=15%  Similarity=0.052  Sum_probs=190.8

Q ss_pred             CCeEEEccCCCcccC--Cccc-CCcceeeeeeccCCcccCCC---chhhcCCCCccEEEeCCCcCCc-----CCcccc-C
Q 005744          211 APTAISIPFRGIYEL--PERL-GFLKLKLFLFFTENLSLQIP---DPFFEGMTELRVLDLTGFRFHS-----LPSSLG-C  278 (679)
Q Consensus       211 ~l~~l~l~~~~~~~l--~~~~-~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~-----lp~~i~-~  278 (679)
                      +++.|+++++++...  ...+ .++++++|++.+|.++..-.   ...+..+++|++|||++|.++.     +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            467788888887442  2222 57788888888887552111   1224677888888888887752     222222 2


Q ss_pred             CcCCCEEEcCCcccCC------cccccCCCCCcEEEecCCCCCcc-----chhhhcC-CCCCEEcccCCccccccC----
Q 005744          279 LINLRTLSLENCLVVD------VAIIGDLKKLEILSLKHSSIEQL-----PREIGQL-TCLKLLDLSNCSKLKEIR----  342 (679)
Q Consensus       279 l~~L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~l-----p~~i~~L-~~L~~L~l~~~~~l~~lp----  342 (679)
                      ..+|++|++++|.+.+      +..+..+++|++|++++|.++..     +..+... .......... .......    
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~  161 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY-CSLSAASCEPL  161 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT-SCCBGGGHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccc-cccchhhhccc
Confidence            3468888888887754      23466778888888888876632     1112111 1222232222 1111100    


Q ss_pred             cccccCCCCCcEEEccCCcccceeccCCcCChhhhh-cCCCCceEEeecCCCccCCcc-----c-cccccceeEEEeCCc
Q 005744          343 PNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELK-QLSRLTTLEVHIPDAQVMPQD-----L-VFVELERFRICIGDV  415 (679)
Q Consensus       343 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~-----~-~~~~L~~L~l~~~~~  415 (679)
                      ...+.....++.+.++++.......   ......+. .......+.+..+........     + ....++.+.+..+..
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~---~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~  238 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGV---RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  238 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHH---HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             ccccccccccccccccccccccccc---cccccccccccccccccccccccccchhhhcccccccccccccccchhhccc
Confidence            0113345567777776654321000   00001111 112344555554433221110     1 334555555543332


Q ss_pred             c---------cCCCCCCCcceEEecCCCcceech-----hHHHHhhcccccccccccCcccccccccc--hhhccccceE
Q 005744          416 W---------SWSDGYETSKTLKLQLNNSTYLGY-----GMKMLLKRTEDLHLDELAGFKNVVHELDD--EEGFARLRHL  479 (679)
Q Consensus       416 ~---------~~~~~~~~l~~L~L~~~~~~~~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~l~~L~~L  479 (679)
                      .         ........++.++++++.....+.     .+. ..+.++.++++++.........+..  ....+.|+.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~-~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l  317 (460)
T d1z7xw1         239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  317 (460)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             cccccchhhccccccccccccccccccccccccccccccccc-ccccccccccccccccccccchhhccccccccccccc
Confidence            1         123446678888888765443221     111 2456777777776542211111100  0234578899


Q ss_pred             eeecCCCeeEEEeC-CCccccccccceeeccccccccccccCcccCCCCc-cccCCccEEEEecCCCcccccc---HHHH
Q 005744          480 HVHNGPEILHILNS-DGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDD-KSFSNLRIIKVEGCHRVKHLFP---FSLV  554 (679)
Q Consensus       480 ~l~~~~~l~~~~~~-~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~L~~l~~---~~~~  554 (679)
                      .+++|..-..-... .......++|++|++++ +.+..-....+.  ... ...+.|++|++++| .+++...   ...+
T Consensus       318 ~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~-N~i~~~g~~~l~--~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l  393 (460)
T d1z7xw1         318 WVKSCSFTAACCSHFSSVLAQNRFLLELQISN-NRLEDAGVRELC--QGLGQPGSVLRVLWLADC-DVSDSSCSSLAATL  393 (460)
T ss_dssp             ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS-SBCHHHHHHHHH--HHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhcccccccccchhhhheee-ecccCcccchhh--hhhhcccCCCCEEECCCC-CCChHHHHHHHHHH
Confidence            98888521100000 00113456899999988 455432111111  001 13467999999998 5665311   1235


Q ss_pred             HHhhcCcEEEEcccccchhhhccccccccCCCCccccc-cccccceeeccCCCC
Q 005744          555 KNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGV-YFRKLHFLKLQHLPQ  607 (679)
Q Consensus       555 ~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~cp~  607 (679)
                      ..+++|++|+|+++ .+..-....-.        ..+. .-.+|+.|.+.++.-
T Consensus       394 ~~~~~L~~L~Ls~N-~i~~~g~~~l~--------~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         394 LANHSLRELDLSNN-CLGDAGILQLV--------ESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             HHCCCCCEEECCSS-SCCHHHHHHHH--------HHHTSTTCCCCEEECTTCCC
T ss_pred             hcCCCCCEEECCCC-cCCHHHHHHHH--------HHHHhCCCccCEEECCCCCC
Confidence            56789999999987 44431110000        0111 334789999988653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2e-09  Score=93.74  Aligned_cols=103  Identities=20%  Similarity=0.135  Sum_probs=74.7

Q ss_pred             CccEEEeCCCcCCcCCccccCCcCCCEEEcCCcc-cCC--cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEccc
Q 005744          258 ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL-VVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLS  333 (679)
Q Consensus       258 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~-~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~  333 (679)
                      ....++.+++.+.+.|..+..+++|++|++.++. +..  +..|.++++|+.|++++|+|+.++. .|..+++|++|+|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            3445677777777777777777788888886654 555  4567788888888888888887754 47778888888888


Q ss_pred             CCccccccCcccccCCCCCcEEEccCCcc
Q 005744          334 NCSKLKEIRPNVISNLTRLEELYMGNSFT  362 (679)
Q Consensus       334 ~~~~l~~lp~~~l~~l~~L~~L~l~~~~~  362 (679)
                      + +.++.+|.+.+..+ +|++|++++|.+
T Consensus        89 ~-N~l~~l~~~~~~~~-~l~~L~L~~Np~  115 (156)
T d2ifga3          89 F-NALESLSWKTVQGL-SLQELVLSGNPL  115 (156)
T ss_dssp             S-SCCSCCCSTTTCSC-CCCEEECCSSCC
T ss_pred             C-CCCcccChhhhccc-cccccccCCCcc
Confidence            7 67778877755443 688888887765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.1e-09  Score=92.58  Aligned_cols=81  Identities=23%  Similarity=0.191  Sum_probs=43.6

Q ss_pred             cCCCCccEEEeCCC-cCCcCC-ccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchhhhcCCCCCE
Q 005744          254 EGMTELRVLDLTGF-RFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKL  329 (679)
Q Consensus       254 ~~l~~L~~L~l~~~-~l~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~  329 (679)
                      ..+++|+.|+++++ .++.++ ..|.++++|+.|++++|.+..  +..|..+++|++|+|++|+++.+|.++....+|++
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~  107 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE  107 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCE
T ss_pred             cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccccc
Confidence            44555555555443 255543 335555555555555555555  34455555555566655555555555444445556


Q ss_pred             EcccC
Q 005744          330 LDLSN  334 (679)
Q Consensus       330 L~l~~  334 (679)
                      |++++
T Consensus       108 L~L~~  112 (156)
T d2ifga3         108 LVLSG  112 (156)
T ss_dssp             EECCS
T ss_pred             cccCC
Confidence            66655

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.76  E-value=2.3e-09  Score=107.45  Aligned_cols=183  Identities=16%  Similarity=0.087  Sum_probs=107.3

Q ss_pred             hcCCCeEEEccCCCccc-----CCccc-CCcceeeeeeccCCccc---CCCc------hhhcCCCCccEEEeCCCcCCc-
Q 005744          208 IDEAPTAISIPFRGIYE-----LPERL-GFLKLKLFLFFTENLSL---QIPD------PFFEGMTELRVLDLTGFRFHS-  271 (679)
Q Consensus       208 ~~~~l~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~---~~~~------~~~~~l~~L~~L~l~~~~l~~-  271 (679)
                      ....++.|++++|.+..     +...+ ..++|+.+.+.++....   ..+.      ..+...++|+.|++++|.+.. 
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  108 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  108 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence            35677888888877622     22233 56778888877654321   1111      113556778888888877653 


Q ss_pred             ----CCccccCCcCCCEEEcCCcccCC--ccc-------------ccCCCCCcEEEecCCCCC-----ccchhhhcCCCC
Q 005744          272 ----LPSSLGCLINLRTLSLENCLVVD--VAI-------------IGDLKKLEILSLKHSSIE-----QLPREIGQLTCL  327 (679)
Q Consensus       272 ----lp~~i~~l~~L~~L~L~~~~~~~--~~~-------------i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L  327 (679)
                          +...+...++|++|++++|.+..  ...             ....+.|+.++++++.++     .+...+...+.|
T Consensus       109 ~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L  188 (344)
T d2ca6a1         109 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  188 (344)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             cccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhh
Confidence                34445567788888888776533  111             134567778888777665     234445667778


Q ss_pred             CEEcccCCcccccc-----CcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCc
Q 005744          328 KLLDLSNCSKLKEI-----RPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ  394 (679)
Q Consensus       328 ~~L~l~~~~~l~~l-----p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  394 (679)
                      ++|++++| .++.-     ....+...++|++|++++|.+....   .......+...++|+.|++++|.+.
T Consensus       189 ~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g---~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         189 HTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---SSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             CEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---HHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             cccccccc-cccccccccchhhhhcchhhhcccccccccccccc---cccccccccccccchhhhhhcCccC
Confidence            88887774 33321     1122556677778887777543110   0112244566777777777776543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.53  E-value=1.6e-08  Score=101.15  Aligned_cols=182  Identities=14%  Similarity=0.119  Sum_probs=99.1

Q ss_pred             cCCCeEEEccCCCccc-----CCccc-CCcceeeeeeccCCcccCCCc------------hhhcCCCCccEEEeCCCcCC
Q 005744          209 DEAPTAISIPFRGIYE-----LPERL-GFLKLKLFLFFTENLSLQIPD------------PFFEGMTELRVLDLTGFRFH  270 (679)
Q Consensus       209 ~~~l~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~~~~~------------~~~~~l~~L~~L~l~~~~l~  270 (679)
                      .++++.+++++|.+..     +...+ ..++|+.|.+++|.+...-..            ......+.|+.+++++|.++
T Consensus        92 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~  171 (344)
T d2ca6a1          92 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  171 (344)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccc
Confidence            3457777777776633     22222 466777777776654211000            01134566777777777654


Q ss_pred             -----cCCccccCCcCCCEEEcCCcccCC-------cccccCCCCCcEEEecCCCCC-----ccchhhhcCCCCCEEccc
Q 005744          271 -----SLPSSLGCLINLRTLSLENCLVVD-------VAIIGDLKKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLS  333 (679)
Q Consensus       271 -----~lp~~i~~l~~L~~L~L~~~~~~~-------~~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~  333 (679)
                           .+...+....+|++|++++|.+..       ...+...++|++|++++|.++     .+...+..+++|++|+++
T Consensus       172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence                 233445566677777777776653       133556677777777777664     244456667777777777


Q ss_pred             CCccccccCccc----ccC--CCCCcEEEccCCcccceeccCCcCChhhhh-cCCCCceEEeecCCCc
Q 005744          334 NCSKLKEIRPNV----ISN--LTRLEELYMGNSFTQWKVEGQSNASLGELK-QLSRLTTLEVHIPDAQ  394 (679)
Q Consensus       334 ~~~~l~~lp~~~----l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~  394 (679)
                      +|. ++......    +..  .+.|++|++++|.+....   .......+. +.++|+.|++++|.+.
T Consensus       252 ~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~---~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         252 DCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA---VRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             TCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH---HHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cCc-cCchhhHHHHHHhhhccCCCCCEEECCCCcCChHH---HHHHHHHHHccCCCCCEEECCCCcCC
Confidence            743 33221111    222  245777777777543210   001122232 4566777777776654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=4.3e-07  Score=79.20  Aligned_cols=63  Identities=29%  Similarity=0.181  Sum_probs=34.9

Q ss_pred             hcCCCCccEEEeCCCcCCcCC---ccccCCcCCCEEEcCCcccCCccc--ccCCCCCcEEEecCCCCC
Q 005744          253 FEGMTELRVLDLTGFRFHSLP---SSLGCLINLRTLSLENCLVVDVAI--IGDLKKLEILSLKHSSIE  315 (679)
Q Consensus       253 ~~~l~~L~~L~l~~~~l~~lp---~~i~~l~~L~~L~L~~~~~~~~~~--i~~L~~L~~L~l~~~~l~  315 (679)
                      +..+++|++|++++|.++.++   ..+..+++|++|++++|.+.+.+.  ..+..+|+.|++++|.+.
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            345666777777777666543   334456666666666666655221  112234566666666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3.7e-07  Score=79.63  Aligned_cols=59  Identities=20%  Similarity=0.176  Sum_probs=33.2

Q ss_pred             ccCCcCCCEEEcCCcccCCc----ccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccC
Q 005744          276 LGCLINLRTLSLENCLVVDV----AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSN  334 (679)
Q Consensus       276 i~~l~~L~~L~L~~~~~~~~----~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~  334 (679)
                      ..++++|++|++++|.+...    ..+..+++|++|++++|.|+.++. ...+..+|++|++.+
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~  124 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDG  124 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTT
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCC
Confidence            34566666666666666551    234456666666666666665554 122334556666666

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.04  E-value=0.00022  Score=61.64  Aligned_cols=40  Identities=18%  Similarity=0.267  Sum_probs=18.7

Q ss_pred             ccCCcCCCEEEcCCcccCC--c----ccccCCCCCcEEEecCCCCC
Q 005744          276 LGCLINLRTLSLENCLVVD--V----AIIGDLKKLEILSLKHSSIE  315 (679)
Q Consensus       276 i~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~  315 (679)
                      +...++|++|++++|.+..  .    ..+...+.|++|++++|.++
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            4444555555555554433  1    22233344555555555444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.00  E-value=0.00026  Score=61.19  Aligned_cols=104  Identities=13%  Similarity=0.003  Sum_probs=63.2

Q ss_pred             CcceeeeeeccCC-cccCCC---chhhcCCCCccEEEeCCCcCC-----cCCccccCCcCCCEEEcCCcccCC--c----
Q 005744          231 FLKLKLFLFFTEN-LSLQIP---DPFFEGMTELRVLDLTGFRFH-----SLPSSLGCLINLRTLSLENCLVVD--V----  295 (679)
Q Consensus       231 ~~~L~~L~l~~~~-~~~~~~---~~~~~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~L~~~~~~~--~----  295 (679)
                      .++|+.|++++++ +....-   ...+...+.|++|++++|.+.     .+...+...+.|++|++++|.+..  .    
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            4556666665432 221100   112456677888888888775     234455667788899998888765  2    


Q ss_pred             ccccCCCCCcEEEecCCCCCcc--------chhhhcCCCCCEEcccC
Q 005744          296 AIIGDLKKLEILSLKHSSIEQL--------PREIGQLTCLKLLDLSN  334 (679)
Q Consensus       296 ~~i~~L~~L~~L~l~~~~l~~l--------p~~i~~L~~L~~L~l~~  334 (679)
                      ..+..-+.|++|+++++.+..+        ...+..-++|+.|+++.
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence            3456667788888877755433        33344556666666654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.60  E-value=0.00065  Score=58.58  Aligned_cols=62  Identities=13%  Similarity=0.184  Sum_probs=27.8

Q ss_pred             cCCCCccEEEeCCC-cCC-----cCCccccCCcCCCEEEcCCcccCC--c----ccccCCCCCcEEEecCCCCC
Q 005744          254 EGMTELRVLDLTGF-RFH-----SLPSSLGCLINLRTLSLENCLVVD--V----AIIGDLKKLEILSLKHSSIE  315 (679)
Q Consensus       254 ~~l~~L~~L~l~~~-~l~-----~lp~~i~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~  315 (679)
                      .+.+.|++|+++++ .++     .+-..+...++|++|++++|.+..  .    ..+.....++.+++++|.+.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            34455555555542 232     122333445555555555554433  1    22333445555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.41  E-value=0.00067  Score=58.47  Aligned_cols=105  Identities=14%  Similarity=0.147  Sum_probs=64.3

Q ss_pred             CCcceeeeeeccC-CcccCCC---chhhcCCCCccEEEeCCCcCCc-----CCccccCCcCCCEEEcCCcccCC------
Q 005744          230 GFLKLKLFLFFTE-NLSLQIP---DPFFEGMTELRVLDLTGFRFHS-----LPSSLGCLINLRTLSLENCLVVD------  294 (679)
Q Consensus       230 ~~~~L~~L~l~~~-~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~L~~~~~~~------  294 (679)
                      +.+.|+.|+++++ .+....-   ...+...++|+.|++++|.++.     +-..+...+.++.+++++|.+..      
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            3456666666553 2221111   1123567888888888887752     44456677889999999888765      


Q ss_pred             cccccCCCCCcEEEec--CCCCC-----ccchhhhcCCCCCEEcccC
Q 005744          295 VAIIGDLKKLEILSLK--HSSIE-----QLPREIGQLTCLKLLDLSN  334 (679)
Q Consensus       295 ~~~i~~L~~L~~L~l~--~~~l~-----~lp~~i~~L~~L~~L~l~~  334 (679)
                      ...+...++|+.++|+  ++.+.     .+...+.+.++|++|++..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            2456666777766554  34454     2444455666777776655