Citrus Sinensis ID: 005748

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------68
MLSDADVDNKIPTQGLRYADASDSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRGHGESGRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSPVLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWYSHLYSVY
cccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccEEEcccccEEEcccccccHHHHHHHHHHHHHHcccEEEEEEEccEEEEEcccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccEEEcccHHHHHHHHHcccccHHHHHHHHHHcccccccccEEEEEEEEEEccccccccEEEEEEccccccHHHHHHHHHcccccccccccccccccccccEEEEEEcccEEEEEEEEccccEEEEEEEEEccccccEEEEEEEEEcccEEEEEEEccccHHHHHHHccccccccccccHHHHHHHHHcccccccEEEEEEEccccccccccccccccccccccccccHHccccccccccccccccccccccHHHHHHHHcccccEEEEEccEEEEEHHHHHcccccccccccccccccEEEEEEEEcccccccccccEEEccccHHHHcccccEEccccccccEEEEEEccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEcccccc
ccccccccccccccccEEEcccccEEEEEEEEcccccEEEEcccccccccccEEEEEEccccEEEEccccEEEcccccccccccHHHHHHHHHHHHccEEEEEEEccEEEEEcccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccEEEEcHHHHcccccccccHHHHHHHHHHHcccccccccEEEEEEEEEEcccccccEEEEEEEccccccHHHHHHHHHccccccccccccEEEEEccccccccccccccEEEEEcccccEEEEEEEHHHccccccEEEEEcccccccccEEEcEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccEEEEEEEcEEccccccEEEEcccccccccccHHHHccccccccccccHHccccHHHHHHHHHHHHHHccccEEEEEccEEEcHHHHHHcccccEEEccccccEEEEEEEEEcccccccEEEEEEEEcccEEEEEEEccccccccccccEEEEEEEccccccHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEcHHHHcHccccccccHHHccccEEEEccccc
mlsdadvdnkiptqglryadasdsEYYILLTkdkkpicrtrclnppehlphhwnvndivptskiildgmshcflspapecsrdhnEWRRFLIYLQGRDMVAIAKFKFwefyilppdqtsnfTNIRVAYKMEktrnasngrghgesgrscqvvrptatkanindsptlpvniVKETVSRGNACIQARvsdtsednfspvlkfspvvgdrlssestietcsrpepravkqagpleknfvradpsYLQTLGQAHSGWIFGAIAELvdnsrdakaTKLEISIESIYFkkagkdipmlsiiddghgmthqdVVRMtyfghkqpdaddpnrigrfgvgfktgamrLGKDALVLTQTADSRSIAFLSQSLnqgkdnleipivsyyrkgqfmeldTVVQSEATAKYNLksikefspfnkyligekaglfqdkctgtQIYIWNldqwgsnyclewdnglnggssfhqgdilirsrrirsrpgqisqkvpldyslrSYLEVIFLVPRMKIYVQGslvrsrplaksLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVggmihngdtgrgvigvidvsdlmdegnGLVWVHnnkqgfldcepYARLEEWLGKVADeywdnkfdslnvvkdgalykpdqewvqcnkcrkwrmldpgfdtkslpvewYSHLYSVY
mlsdadvdnkiptqglryadasdseYYILLTKDKKPICRTRCLNppehlphhwnVNDIVPTSKIILDGMSHCFLSpapecsrdHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKtrnasngrghgesgrscQVVRPTatkanindsptlpvNIVKETVSRGNACIQArvsdtsednfspvlkfspvvgdrlssestietcsrpepravkqagplEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISiesiyfkkagkdIPMLSIIDDGHGMTHQDVVRMTYFGhkqpdaddpnriGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLsqslnqgkdnlEIPIVSYYRKGQFMELDTVVQSEATAKYnlksikefspFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRsrrirsrpgqisqkvpldyslRSYLEVIFLVPRMKIYVQGslvrsrplaksLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVkdgalykpdqewvqCNKCRKWRmldpgfdtkslpvewysHLYSVY
MLSDADVDNKIPTQGLRYADASDSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRGHGESGRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSPVLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILirsrrirsrPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWYSHLYSVY
****************RYADASDSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYK*************************************LPVNIVKETVSRGNACIQA**************************************************FVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHK*******NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRS**GQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWYSHLYS**
********NKIPTQGLRYADASDSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFL*************RRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAY************************************************************************************************************VRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT******************GVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWYSHLYSV*
MLSDADVDNKIPTQGLRYADASDSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTR***************QVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSPVLKFSPVVG*************RPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWYSHLYSVY
*****DVDNKIPTQGLRYADASDSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKT*********************************LPVNIVKETVSRGNACI************************************RPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRI**RPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWYSHLYSVY
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MLSDADVDNKIPTQGLRYADASDSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRGHGESGRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSPVLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWYSHLYSVY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query679 2.2.26 [Sep-21-2011]
Q14149 939 MORC family CW-type zinc yes no 0.583 0.421 0.318 1e-46
Q8BMD7 928 MORC family CW-type zinc no no 0.589 0.431 0.314 1e-40
Q8TE76 937 MORC family CW-type zinc no no 0.589 0.426 0.305 1e-38
Q8C5W4 1022 MORC family CW-type zinc no no 0.365 0.242 0.292 3e-23
Q9Y6X9 1032 MORC family CW-type zinc no no 0.368 0.242 0.297 3e-23
Q69ZX6 1030 MORC family CW-type zinc no no 0.368 0.242 0.294 1e-22
Q9WVL5 950 MORC family CW-type zinc no no 0.384 0.274 0.275 2e-22
Q86VD1 984 MORC family CW-type zinc no no 0.569 0.393 0.220 1e-19
>sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3 Back     alignment and function desciption
 Score =  188 bits (477), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 145/455 (31%), Positives = 230/455 (50%), Gaps = 59/455 (12%)

Query: 241 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGH 300
           P +L T   +H+ W F A+AEL+DN+ D      +I I+    K    D   L+  D+G+
Sbjct: 16  PKFLHTNSTSHT-WPFSAVAELIDNAYDPDVNAKQIWID----KTVINDHICLTFTDNGN 70

Query: 301 GMTHQDVVRMTYFGHKQPDADDPNR-IGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFL 359
           GMT   + +M  FG       + +  +G +G GFK+G+MRLGKDA+V T+  +S S+  L
Sbjct: 71  GMTSDKLHKMLSFGFSDKVTMNGHVPVGLYGNGFKSGSMRLGKDAIVFTKNGESMSVGLL 130

Query: 360 SQSLNQ--GKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFN--KYLIG 415
           SQ+  +    +++ +PIV++ +  Q + L       A +K +L +I E S F+  + L+ 
Sbjct: 131 SQTYLEVIKAEHVVVPIVAFNKHRQMINL-------AESKASLAAILEHSLFSTEQKLLA 183

Query: 416 EKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDI-LIRSRRIRSRPGQ 474
           E   +   K  GT+I IWNL  + +    E+D   +        D+  I  ++   +  +
Sbjct: 184 ELDAIIGKK--GTRIIIWNLRSYKN--ATEFDFEKDKYDIRIPEDLDEITGKKGYKKQER 239

Query: 475 ISQKVP-LDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGI----IMGK 529
           + Q  P  DYSLR+Y  +++L PRM+I ++G  V+++ ++KSL    +E  +     + K
Sbjct: 240 MDQIAPESDYSLRAYCSILYLKPRMQIILRGQKVKTQLVSKSL--AYIERDVYRPKFLSK 297

Query: 530 SAHLTLGRCQLEWEQMNC------GIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDV 583
           +  +T G         NC      GI +Y   RLI+AY++VG  +   + G GV+G+I  
Sbjct: 298 TVRITFG--------FNCRNKDHYGIMMYHRNRLIKAYEKVGCQLRANNMGVGVVGII-- 347

Query: 584 SDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWD------NKFDSLNVVKDG 637
                E N L   H NKQ F     Y      LG+  ++YW+      N    LN+  + 
Sbjct: 348 -----ECNFLKPTH-NKQDFDYTNEYRLTITALGEKLNDYWNEMKVKKNTEYPLNLPVED 401

Query: 638 ALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWY 672
              +PDQ WVQC+ C KWR L  G D   LP +WY
Sbjct: 402 IQKRPDQTWVQCDACLKWRKLPDGMD--QLPEKWY 434

Homo sapiens (taxid: 9606)
>sp|Q8BMD7|MORC4_MOUSE MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2 Back     alignment and function description
>sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2 Back     alignment and function description
>sp|Q8C5W4|MOR2B_MOUSE MORC family CW-type zinc finger protein 2B OS=Mus musculus GN=Morc2b PE=2 SV=2 Back     alignment and function description
>sp|Q9Y6X9|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2 PE=1 SV=2 Back     alignment and function description
>sp|Q69ZX6|MOR2A_MOUSE MORC family CW-type zinc finger protein 2A OS=Mus musculus GN=Morc2a PE=1 SV=2 Back     alignment and function description
>sp|Q9WVL5|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1 PE=2 SV=1 Back     alignment and function description
>sp|Q86VD1|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query679
255583448754 zinc finger protein, putative [Ricinus c 0.949 0.855 0.683 0.0
359476999760 PREDICTED: MORC family CW-type zinc fing 0.951 0.85 0.644 0.0
296088514596 unnamed protein product [Vitis vinifera] 0.765 0.872 0.708 0.0
356495297692 PREDICTED: MORC family CW-type zinc fing 0.749 0.735 0.650 0.0
222635901 800 hypothetical protein OsJ_22008 [Oryza sa 0.935 0.793 0.524 0.0
115468994 792 Os06g0622000 [Oryza sativa Japonica Grou 0.935 0.801 0.524 0.0
357484261577 MORC family CW-type zinc finger protein 0.714 0.840 0.663 0.0
218198566766 hypothetical protein OsI_23737 [Oryza sa 0.885 0.784 0.484 1e-173
242096394758 hypothetical protein SORBIDRAFT_10g02439 0.880 0.788 0.459 1e-164
413954785 785 hypothetical protein ZEAMMB73_569962 [Ze 0.902 0.780 0.477 1e-163
>gi|255583448|ref|XP_002532483.1| zinc finger protein, putative [Ricinus communis] gi|223527808|gb|EEF29907.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/658 (68%), Positives = 522/658 (79%), Gaps = 13/658 (1%)

Query: 23  DSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKI-ILDGMSHCFLSPAPECS 81
           D + Y+ L KD KPICRT+CLNPP  +P  WN++DI+P SK+ I DG+ HCFL PA E +
Sbjct: 31  DCKLYVFLMKDGKPICRTQCLNPPAEVPQSWNIHDIIPRSKMNIYDGLPHCFLRPAAENN 90

Query: 82  RDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRG 141
           RD NEW+RFL YLQ R+ V IAKF+F  FYILPP +  NF++++VAY+ EKT N  + + 
Sbjct: 91  RDQNEWQRFLSYLQKRNSVGIAKFEFCNFYILPPAEAYNFSHVKVAYR-EKTSNKYSHQK 149

Query: 142 HGES----GRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSP 197
           H ES      +CQ V        +    T+P    +   +R N  ++A      EDN + 
Sbjct: 150 HCESVVDTTEACQFV--GCNLDPVETCGTVPSQSAERFTARKNVHMKASDQGIIEDNETS 207

Query: 198 VLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFG 257
            +KFS  +GD L  E TI    R + RAVKQ GPL +N+VRADPSYLQTLGQAHSGWIFG
Sbjct: 208 YVKFSQSIGDPLGHEPTI----RHQRRAVKQDGPLMENYVRADPSYLQTLGQAHSGWIFG 263

Query: 258 AIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQ 317
           AIAELVDNSRDAKA++L+I IE+IY K+AGKDIPMLSIIDDGHGMTHQ+V+RMT FGHKQ
Sbjct: 264 AIAELVDNSRDAKASRLDILIETIYSKRAGKDIPMLSIIDDGHGMTHQEVMRMTCFGHKQ 323

Query: 318 PDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSY 377
           PD DD +RIGRFGVGFKTGAMRLG+DALVLTQT+ SRSIAFLSQSLN+G DNLEIPIVSY
Sbjct: 324 PDVDDLDRIGRFGVGFKTGAMRLGRDALVLTQTSCSRSIAFLSQSLNEGNDNLEIPIVSY 383

Query: 378 YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 437
            RKGQFME+DT VQSEA AK NLK+IKE S F+KYLIGEKAGLF  K TGTQIYIWNLD+
Sbjct: 384 RRKGQFMEVDTNVQSEALAKNNLKAIKELSHFDKYLIGEKAGLFHGKHTGTQIYIWNLDE 443

Query: 438 WGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPR 497
           WGS YCL+W  GLNG SSFHQGDILIRS+R+RSRPGQ++QKVPLDYSLRSYLEVIFLVPR
Sbjct: 444 WGSGYCLDWTTGLNGWSSFHQGDILIRSKRVRSRPGQMTQKVPLDYSLRSYLEVIFLVPR 503

Query: 498 MKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRL 557
           M+IYVQGSLV+SRPLAKSL+ TC  T  I+GK  HLTLGRCQLEWEQ N GIFLYWHGRL
Sbjct: 504 MRIYVQGSLVKSRPLAKSLSMTCEATDNILGKRVHLTLGRCQLEWEQGNSGIFLYWHGRL 563

Query: 558 IEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLG 617
           IEAYKRVGGM H G  G GVIGVIDV+DLMD GNG VWVH+NKQGF DCEPY RLE WLG
Sbjct: 564 IEAYKRVGGMAH-GKVGLGVIGVIDVTDLMDNGNGRVWVHSNKQGFQDCEPYVRLENWLG 622

Query: 618 KVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWYSHL 675
           K  DEYWDN FD++ + K G LYKPDQEWVQC++CRKWR+L  G+D K+L +EW+ ++
Sbjct: 623 KKVDEYWDNNFDTVPLKKGGVLYKPDQEWVQCDRCRKWRILCAGYDRKNLLLEWFCYM 680

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359476999|ref|XP_002263942.2| PREDICTED: MORC family CW-type zinc finger protein 2B-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296088514|emb|CBI37505.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356495297|ref|XP_003516515.1| PREDICTED: MORC family CW-type zinc finger protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|222635901|gb|EEE66033.1| hypothetical protein OsJ_22008 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|115468994|ref|NP_001058096.1| Os06g0622000 [Oryza sativa Japonica Group] gi|51090841|dbj|BAD35369.1| Zinc finger CW-type coiled-coil domain protein 3-like [Oryza sativa Japonica Group] gi|113596136|dbj|BAF20010.1| Os06g0622000 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357484261|ref|XP_003612418.1| MORC family CW-type zinc finger protein [Medicago truncatula] gi|355513753|gb|AES95376.1| MORC family CW-type zinc finger protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|218198566|gb|EEC80993.1| hypothetical protein OsI_23737 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|242096394|ref|XP_002438687.1| hypothetical protein SORBIDRAFT_10g024390 [Sorghum bicolor] gi|241916910|gb|EER90054.1| hypothetical protein SORBIDRAFT_10g024390 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|413954785|gb|AFW87434.1| hypothetical protein ZEAMMB73_569962 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query679
ZFIN|ZDB-GENE-030131-1502 1079 morc3a "MORC family CW-type zi 0.608 0.382 0.316 1.5e-46
UNIPROTKB|F1MFY1 960 MORC3 "Uncharacterized protein 0.596 0.421 0.329 2.9e-46
UNIPROTKB|F1PFJ7 939 MORC3 "Uncharacterized protein 0.590 0.427 0.328 4.2e-44
UNIPROTKB|F1SGX2 940 MORC3 "Uncharacterized protein 0.593 0.428 0.32 7.9e-43
UNIPROTKB|Q14149 939 MORC3 "MORC family CW-type zin 0.592 0.428 0.318 1.9e-42
UNIPROTKB|F1P2D9 926 MORC3 "Uncharacterized protein 0.602 0.441 0.312 3.8e-40
ZFIN|ZDB-GENE-040801-98 763 morc3b "MORC family CW-type zi 0.596 0.530 0.322 9.5e-40
MGI|MGI:1922996 928 Morc4 "microrchidia 4" [Mus mu 0.584 0.427 0.318 2.3e-37
UNIPROTKB|Q8TE76 937 MORC4 "MORC family CW-type zin 0.590 0.427 0.306 1.2e-35
UNIPROTKB|F1P705 898 MORC4 "Uncharacterized protein 0.592 0.447 0.296 6.7e-35
ZFIN|ZDB-GENE-030131-1502 morc3a "MORC family CW-type zinc finger 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 498 (180.4 bits), Expect = 1.5e-46, P = 1.5e-46
 Identities = 143/452 (31%), Positives = 229/452 (50%)

Query:   240 DPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDG 299
             +P +L T   +H+ W F AIAEL+DN+ D   +  +  I+    +  G+D   L  +D+G
Sbjct:    15 NPKFLHTNSTSHT-WPFSAIAELIDNAYDPDVSAKQFWIDKTAIR--GEDC--LIFMDNG 69

Query:   300 HGMTHQDVVRMTYFGHKQPDADDPN-RIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAF 358
              GM +  + +M  FG    +  + +  +G +G GFK+G+MRLG+DA+V ++  +S  +  
Sbjct:    70 SGMDNDKMFKMLSFGFSDKETINGHVPVGLYGNGFKSGSMRLGRDAIVFSKNKESMCVGL 129

Query:   359 LSQSLNQG--KDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKY--LI 414
             LSQ+  +    +N+ +PIVS+ R GQ M        EA    +L  I ++S F     L+
Sbjct:   130 LSQTYLEAIQAENVIVPIVSFKRVGQSM------LPEAQHAASLHDILQYSLFRTEAELL 183

Query:   415 GEKAGL---FQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILXXXXXXXXX 471
              E   +   + ++CTGT+I +WNL +  S    E+D  ++        ++          
Sbjct:   184 CELKAINAHYANECTGTRIIVWNLRKTSSGKS-EFDFDIDRYDIQIPAEVYENEKEKYKQ 242

Query:   472 PGQISQKVP-LDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVET--GIIMG 528
             P +  Q  P  D+SLR+Y  +++L P+M+I ++G  V+++ ++KSL     +      + 
Sbjct:   243 PCRTFQSSPESDFSLRAYCSILYLKPKMQIILRGQKVKTQLISKSLAHIVKDKYKPNFLN 302

Query:   529 KSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMD 588
             +   +T G      E    G+ +Y   RLI+AY+RVG      + G GVI VI       
Sbjct:   303 ERIPITFGYNTKSKEHY--GVMMYHKNRLIKAYERVGCQNRANEKGVGVIAVI------- 353

Query:   589 EGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWD---NK--FDSLNVVKDGALYKPD 643
             E N L   HN KQ F   E Y R    LG   +EYW    +K  FD+ N+  +    +PD
Sbjct:   354 ECNFLKPTHN-KQDFDYTEEYRRTITTLGVKLEEYWKAIRHKKGFDN-NLPMEDIPKRPD 411

Query:   644 QEWVQCNKCRKWRMLDPGFDTKSLPVEWYSHL 675
             Q WVQC++C KWR L  G D   LP +W+  +
Sbjct:   412 QNWVQCDECLKWRKLPDGIDMNKLPDKWFCRM 443
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
UNIPROTKB|F1MFY1 MORC3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PFJ7 MORC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGX2 MORC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q14149 MORC3 "MORC family CW-type zinc finger protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2D9 MORC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-98 morc3b "MORC family CW-type zinc finger 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1922996 Morc4 "microrchidia 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TE76 MORC4 "MORC family CW-type zinc finger protein 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P705 MORC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query679
pfam13589134 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr 5e-22
COG0323 638 COG0323, MutL, DNA mismatch repair enzyme (predict 6e-07
TIGR00585312 TIGR00585, mutl, DNA mismatch repair protein MutL 1e-06
pfam0749650 pfam07496, zf-CW, CW-type Zinc Finger 2e-06
PRK00095 617 PRK00095, mutL, DNA mismatch repair protein; Revie 2e-06
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 2e-04
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 3e-04
PRK05218 613 PRK05218, PRK05218, heat shock protein 90; Provisi 5e-04
COG0326 623 COG0326, HtpG, Molecular chaperone, HSP90 family [ 0.001
>gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information 
 Score = 92.0 bits (229), Expect = 5e-22
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 7/121 (5%)

Query: 256 FGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGH 315
             AIAEL+DNS DA AT ++ISI+        +    +SI D+G GM+++++      G 
Sbjct: 4   EDAIAELIDNSIDADATNVKISIDPD------RGEDGISIEDNGGGMSYEELRNALKLGR 57

Query: 316 KQPDADDPNR-IGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI 374
              + +  +  +GR G+G K  ++ LG+   V ++     S   L       +   ++P 
Sbjct: 58  SSKEGERDSTTLGRKGIGMKLASLSLGRKLTVTSKKEGESSTLTLDLDDIDKEGEWDLPE 117

Query: 375 V 375
           +
Sbjct: 118 L 118

This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 134
>gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233035 TIGR00585, mutl, DNA mismatch repair protein MutL Back     alignment and domain information
>gnl|CDD|219431 pfam07496, zf-CW, CW-type Zinc Finger Back     alignment and domain information
>gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed Back     alignment and domain information
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional Back     alignment and domain information
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 679
KOG1845 775 consensus MORC family ATPases [Cell cycle control, 99.95
COG0326 623 HtpG Molecular chaperone, HSP90 family [Posttransl 99.88
PRK05218 613 heat shock protein 90; Provisional 99.85
PTZ00130 814 heat shock protein 90; Provisional 99.84
PRK14083 601 HSP90 family protein; Provisional 99.83
KOG1845 775 consensus MORC family ATPases [Cell cycle control, 99.82
PTZ00272 701 heat shock protein 83 kDa (Hsp83); Provisional 99.79
KOG0019 656 consensus Molecular chaperone (HSP90 family) [Post 99.69
KOG0020 785 consensus Endoplasmic reticulum glucose-regulated 99.69
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 99.68
COG0323 638 MutL DNA mismatch repair enzyme (predicted ATPase) 99.46
PRK00095 617 mutL DNA mismatch repair protein; Reviewed 99.46
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 99.3
PF0749650 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zi 99.24
COG1389538 DNA topoisomerase VI, subunit B [DNA replication, 99.12
KOG1979 694 consensus DNA mismatch repair protein - MLH1 famil 98.91
KOG1978 672 consensus DNA mismatch repair protein - MLH2/PMS1/ 98.85
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 98.76
PRK04184535 DNA topoisomerase VI subunit B; Validated 98.72
TIGR01052488 top6b DNA topoisomerase VI, B subunit. This model 98.56
PRK05559 631 DNA topoisomerase IV subunit B; Reviewed 98.49
TIGR01055 625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 98.41
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 98.32
PRK05644 638 gyrB DNA gyrase subunit B; Validated 98.24
smart00433 594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 98.24
TIGR01059 654 gyrB DNA gyrase, B subunit. This model describes t 98.22
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 98.21
PRK14867 659 DNA topoisomerase VI subunit B; Provisional 98.18
KOG1977 1142 consensus DNA mismatch repair protein - MLH3 famil 97.93
TIGR01058 637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 97.65
COG0187 635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 97.64
PLN03128 1135 DNA topoisomerase 2; Provisional 97.36
PLN03237 1465 DNA topoisomerase 2; Provisional 97.27
COG3290537 CitA Signal transduction histidine kinase regulati 97.16
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 97.14
PHA02569 602 39 DNA topoisomerase II large subunit; Provisional 97.14
PRK10604433 sensor protein RstB; Provisional 97.07
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 97.07
PRK09470461 cpxA two-component sensor protein; Provisional 96.97
PRK10364457 sensor protein ZraS; Provisional 96.93
PRK09467435 envZ osmolarity sensor protein; Provisional 96.86
PTZ00109 903 DNA gyrase subunit b; Provisional 96.86
PRK09303380 adaptive-response sensory kinase; Validated 96.74
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 96.74
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 96.68
PRK11086542 sensory histidine kinase DcuS; Provisional 96.63
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 96.63
PRK11006430 phoR phosphate regulon sensor protein; Provisional 96.63
COG0642336 BaeS Signal transduction histidine kinase [Signal 96.57
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 96.55
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 96.54
PRK11100475 sensory histidine kinase CreC; Provisional 96.47
PRK10549466 signal transduction histidine-protein kinase BaeS; 96.36
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 96.27
PRK10755356 sensor protein BasS/PmrB; Provisional 96.11
PRK10815485 sensor protein PhoQ; Provisional 96.01
COG4191603 Signal transduction histidine kinase regulating C4 95.87
PRK15347921 two component system sensor kinase SsrA; Provision 95.74
PRK11091779 aerobic respiration control sensor protein ArcB; P 95.72
PRK10337449 sensor protein QseC; Provisional 95.63
PRK11360607 sensory histidine kinase AtoS; Provisional 95.54
PRK13837828 two-component VirA-like sensor kinase; Provisional 95.44
PRK09835482 sensor kinase CusS; Provisional 95.27
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 95.24
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 95.21
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 95.08
PRK11466914 hybrid sensory histidine kinase TorS; Provisional 95.06
TIGR02956968 TMAO_torS TMAO reductase sytem sensor TorS. This p 94.91
PRK10547670 chemotaxis protein CheA; Provisional 94.87
PRK10490895 sensor protein KdpD; Provisional 94.84
PRK10841924 hybrid sensory kinase in two-component regulatory 94.48
PRK11107919 hybrid sensory histidine kinase BarA; Provisional 94.43
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 94.19
PRK10618894 phosphotransfer intermediate protein in two-compon 93.78
PRK03660146 anti-sigma F factor; Provisional 93.33
PRK099591197 hybrid sensory histidine kinase in two-component r 93.24
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 93.05
PRK04069161 serine-protein kinase RsbW; Provisional 93.05
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 92.89
COG4585365 Signal transduction histidine kinase [Signal trans 92.82
COG3850574 NarQ Signal transduction histidine kinase, nitrate 92.77
COG0643716 CheA Chemotaxis protein histidine kinase and relat 92.15
PRK13557540 histidine kinase; Provisional 91.83
PRK11644495 sensory histidine kinase UhpB; Provisional 90.28
COG2972456 Predicted signal transduction protein with a C-ter 90.13
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 90.13
PF07744119 SPOC: SPOC domain; InterPro: IPR012921 Spen (split 90.11
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 89.47
COG3920221 Signal transduction histidine kinase [Signal trans 89.35
PRK13560807 hypothetical protein; Provisional 86.32
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 86.13
COG5000712 NtrY Signal transduction histidine kinase involved 84.94
COG4192673 Signal transduction histidine kinase regulating ph 83.85
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=99.95  E-value=4.8e-28  Score=277.31  Aligned_cols=371  Identities=23%  Similarity=0.284  Sum_probs=271.6

Q ss_pred             CCCceeeecCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhccccc---CCCccEEEEEecccccCCCCCCEEEEE-
Q 005748          221 PEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA---KATKLEISIESIYFKKAGKDIPMLSII-  296 (679)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~p~~L~slst~~i~~~f~AIaELIDNS~DA---~At~V~I~I~~~~~~~~~~~~~~L~I~-  296 (679)
                      .++..+...+.++..+++++|+|||+++++| .|.++|++||+|||+|.   +|+.+.|.-..   ...+.....+++. 
T Consensus       114 ~a~~~~~~~~~G~~~~iivhpkflhsnatsh-k~a~~a~aeLldnalDEi~~~~tf~~vd~I~---p~~d~~i~a~~v~~  189 (775)
T KOG1845|consen  114 LAELDVIIGKSGGTLHIIVHPKFLHSNATSH-KWAKGAIAELLDNALDEITNGATFVRVDYIN---PVMDIFIRALVVQL  189 (775)
T ss_pred             cccccceeccCCceeEEEEehhhhcCCCccc-ccccChhhhhccccccccccccceEEeeeec---ccccccceeEEeec
Confidence            3444446666666799999999999999999 79999999999999997   56665543221   1112223445555 


Q ss_pred             ----eCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCceeeeeceeccceEEEEEeeC------CCCceeEEEEEec--
Q 005748          297 ----DDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA------DSRSIAFLSQSLN--  364 (679)
Q Consensus       297 ----DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~------~~~s~~~ls~sf~--  364 (679)
                          |||+||.++-+..+|.+|++.+. +-...+|+||+||+++.|++|.++.|++|..      ..+++|+++++|.  
T Consensus       190 ~~~s~~gg~~~~~~i~~~m~l~~~~k~-e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~  268 (775)
T KOG1845|consen  190 KRISDDGGGMKPEVIRKCMSLGYSSKK-EANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRK  268 (775)
T ss_pred             cceeccccccCHHHHHHHHHhhhhhhh-hhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeecc
Confidence                78999999999999999998875 3467899999999999999999999999943      2578999999994  


Q ss_pred             CCCccEEEcC----cccCCC---CcEEEEEeccchhhhhhhhhh-----hhhhcCCCcch--hHHHh-------hcc---
Q 005748          365 QGKDNLEIPI----VSYYRK---GQFMELDTVVQSEATAKYNLK-----SIKEFSPFNKY--LIGEK-------AGL---  420 (679)
Q Consensus       365 ~g~~~i~VPi----~~~e~~---Gt~I~l~~~~~~e~~~e~~L~-----~I~kySpF~s~--~I~e~-------~~~---  420 (679)
                      ++..+++||+    ...+..   -..|...  ..  ..+..++.     .+++|+||.+.  .+.+.       +.+   
T Consensus       269 t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~--s~--~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~  344 (775)
T KOG1845|consen  269 TGKRDFIVPMRLIKMDYEKSDQLWQGILYK--SG--VDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGH  344 (775)
T ss_pred             ccCCceeEecchhhhhhhcccccccceeec--cc--cccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcc
Confidence            5788999999    444431   1122221  11  12223333     39999999973  22220       001   


Q ss_pred             -cc-CCCCCcEEEEEeccCCC---CceeeeccCCCCCCCCCCcCcceeecccccCCCCcccccCcchhhHHHHHhhhhcC
Q 005748          421 -FQ-DKCTGTQIYIWNLDQWG---SNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLV  495 (679)
Q Consensus       421 -~~-~~~~GT~IiI~nLrr~~---~~~eLdF~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYLSiLYL~  495 (679)
                       +. ...+||.+|+||+++|.   +-.++||+.+        +++|.                -...++++.|.++||+.
T Consensus       345 ~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~--------~~~i~----------------~~~~~~~~s~~sil~~~  400 (775)
T KOG1845|consen  345 QFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLD--------PHVIP----------------WTYCHSHLSEASILLLT  400 (775)
T ss_pred             hhhhccCCCceeeeechhhhcccccceeeccccC--------ccccc----------------ccchhhhhhcccccchh
Confidence             22 25799999999997763   3488888765        24442                02456889999999974


Q ss_pred             --CCeEEEEcCeEecccchhhccccceee--cccccc-------eEEEEEEccccccc-ccccceEEEEEeCeeee----
Q 005748          496 --PRMKIYVQGSLVRSRPLAKSLNKTCVE--TGIIMG-------KSAHLTLGRCQLEW-EQMNCGIFLYWHGRLIE----  559 (679)
Q Consensus       496 --PrmkI~LnG~kV~~~~i~~~L~~~~v~--~~~~~~-------~~V~itiGf~k~e~-~~~~~Gi~vY~nnRLI~----  559 (679)
                        +++.+.+.|+.+.++.+......+...  .+....       .......||.+... ....+|+.|||++|||.    
T Consensus       401 ~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~  480 (775)
T KOG1845|consen  401 RRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCR  480 (775)
T ss_pred             ccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcchhhccc
Confidence              799999999999999988876654321  111100       11122456665432 23456999999999999    


Q ss_pred             eeeeccccccCCCCCceEEEEEecCcccccCCCceecccCccCccCchHHHHHHHHHHHHHHHHHhhcccccccc
Q 005748          560 AYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVV  634 (679)
Q Consensus       560 ~~~kVg~q~~~~~~grGVIGVve~~~l~~p~~~~~~pthnKQdFe~t~~y~~L~~~L~e~l~eYw~~~~~~~~~~  634 (679)
                      ++||.++.  ..+.++++++++..++ .       +++|++|+|+.+-.-.+++.+..++++.||...|+.+++.
T Consensus       481 ~~~k~~n~--~~s~~~~~~~il~~n~-~-------~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~  545 (775)
T KOG1845|consen  481 PFVKIDNA--TGSLGQAVIPILVGNF-V-------ETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEA  545 (775)
T ss_pred             ceeeecCC--Cccccccccceecccc-c-------ccCCCccccccccccccchhhhhhcccccccccccccCcc
Confidence            99999985  5579999999999974 3       4699999999999889999999999999999999988765

>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] Back     alignment and domain information
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PTZ00109 DNA gyrase subunit b; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query679
2l7p_A100 Histone-lysine N-methyltransferase ASHH2; CW-domai 4e-07
2e61_A69 Zinc finger CW-type PWWP domain protein 1; ZF-CW d 6e-07
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 6e-07
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 7e-07
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 8e-07
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 1e-06
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 1e-05
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 3e-05
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 6e-05
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 6e-05
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 6e-05
2o1u_A 666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 8e-05
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 8e-05
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 9e-05
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 9e-05
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 1e-04
3peh_A281 Endoplasmin homolog; structural genomics, structur 2e-04
2ioq_A 624 Chaperone protein HTPG; heat shock protein, HSP90; 4e-04
1y4s_A559 Chaperone protein HTPG; HSP90, molecular chaperone 6e-04
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Length = 100 Back     alignment and structure
 Score = 47.5 bits (112), Expect = 4e-07
 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 640 YKPDQEWVQCNKCRKWRMLDPG-FDTKSLPVEWY 672
           Y  +  WV+C+ C KWR +      +      W 
Sbjct: 22  YSTESAWVRCDDCFKWRRIPASVVGSIDESSRWI 55
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Length = 69 Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Length = 333 Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Length = 365 Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Length = 367 Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Length = 348 Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Length = 272 Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Length = 236 Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Length = 228 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Length = 264 Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Length = 256 Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Length = 269 Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Length = 666 Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Length = 220 Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Length = 677 Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} Length = 239 Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Length = 235 Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Length = 281 Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Length = 624 Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Length = 559 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query679
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 99.86
3peh_A281 Endoplasmin homolog; structural genomics, structur 99.86
1y4s_A559 Chaperone protein HTPG; HSP90, molecular chaperone 99.85
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 99.82
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 99.82
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 99.82
2ioq_A 624 Chaperone protein HTPG; heat shock protein, HSP90; 99.81
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 99.81
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 99.81
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 99.8
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 99.8
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 99.78
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 99.77
2o1u_A 666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 99.75
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 99.61
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 99.5
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 99.34
2e61_A69 Zinc finger CW-type PWWP domain protein 1; ZF-CW d 99.31
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 99.26
2l7p_A100 Histone-lysine N-methyltransferase ASHH2; CW-domai 99.15
1ei1_A391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 99.01
3cwv_A369 DNA gyrase, B subunit, truncated; structural genom 98.89
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 98.85
1kij_A390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 98.83
1s16_A390 Topoisomerase IV subunit B; two-domain protein com 98.81
1zxm_A400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 98.65
4duh_A220 DNA gyrase subunit B; structure-based drug design, 98.57
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 98.54
1mu5_A471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 98.37
2zbk_B530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 98.31
3lnu_A408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 98.25
2q2e_B 621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 98.11
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 97.91
1pvg_A418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 97.91
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 97.7
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 97.57
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 97.38
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 97.33
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 97.27
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 97.27
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 97.27
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 97.19
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 97.17
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 97.12
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 97.12
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 97.12
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 97.08
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 97.07
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 97.05
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 97.03
1b3q_A379 Protein (chemotaxis protein CHEA); histine kinase, 96.95
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 96.86
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 96.57
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 96.49
3zxo_A129 Redox sensor histidine kinase response regulator; 96.26
4gfh_A 1177 DNA topoisomerase 2; topoisomerase, protein-DNA co 96.24
3ehg_A128 Sensor kinase (YOCF protein); GHL ATPase domain, t 96.21
3zxq_A124 Hypoxia sensor histidine kinase response regulato; 95.71
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 92.2
3o70_A68 PHD finger protein 13; PHF13, structural genomics 91.04
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 90.06
1we9_A64 PHD finger family protein; structural genomics, PH 88.67
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 88.45
1wee_A72 PHD finger family protein; structural genomics, PH 87.07
3ke6_A399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 82.99
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 80.14
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
Probab=99.86  E-value=2.4e-22  Score=204.79  Aligned_cols=171  Identities=22%  Similarity=0.297  Sum_probs=129.6

Q ss_pred             ceeeecC-HHHHHHhhcccccCHHHHHHHHHhcccccCCC----------------ccEEEEEecccccCCCCCCEEEEE
Q 005748          234 KNFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSII  296 (679)
Q Consensus       234 ~~~~~v~-p~~L~slst~~i~~~f~AIaELIDNS~DA~At----------------~V~I~I~~~~~~~~~~~~~~L~I~  296 (679)
                      ...|.++ .+.|..++.+.|+....+|+|||+||.||.++                .+.|.|..      +.+...|+|.
T Consensus        18 ~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~L~I~   91 (239)
T 3nmq_A           18 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIP------NPQERTLTLV   91 (239)
T ss_dssp             EEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEE
T ss_pred             eEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------eCCccEEEEE
Confidence            3446666 45777778888888888899999999999652                35666652      2246799999


Q ss_pred             eCCCCCCHHHHHhhh-hcccCCC--------CCCCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCC
Q 005748          297 DDGHGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK  367 (679)
Q Consensus       297 DNG~GMt~eeL~~~l-~fG~S~k--------~~~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~  367 (679)
                      |||.||++++|.+.+ ..+.|.+        ...+...||+||+||++++| +|++++|.||+.+.  .++.|.+  .+.
T Consensus        92 DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~-vadkv~V~Sk~~~~--~~~~W~s--~~~  166 (239)
T 3nmq_A           92 DTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVVVITKHNDD--EQYAWES--SAG  166 (239)
T ss_dssp             ECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CST
T ss_pred             eCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccc-cCCEEEEEEeeCCC--ceeEEEE--CCC
Confidence            999999999997765 3444321        12357899999999998866 99999999999764  4778877  344


Q ss_pred             ccEEEcCcc--cCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005748          368 DNLEIPIVS--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG  415 (679)
Q Consensus       368 ~~i~VPi~~--~e~~Gt~I~l~~~~~~-e~~~e~~L~~-I~kySpF~s~~I~  415 (679)
                      ..+.|....  -..+||+|+|+++++. ++.+++.++. |.+||.|..+||.
T Consensus       167 g~fti~~~~~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~  218 (239)
T 3nmq_A          167 GSFTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPIT  218 (239)
T ss_dssp             TEEEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEE
T ss_pred             CcEEEEecCCCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceE
Confidence            567664432  2358999999999865 7888888875 8899999998885
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} Back     alignment and structure
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Back     alignment and structure
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 679
d1h7sa2203 d.122.1.2 (A:29-231) DNA mismatch repair protein P 6e-07
d1b63a2218 d.122.1.2 (A:-2-216) DNA mismatch repair protein M 6e-05
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA mismatch repair protein PMS2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 6e-07
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 258 AIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQ 317
           A+ ELV+NS DA AT +++ ++       G D  ++ + D+G G+  ++   +T   H  
Sbjct: 10  AVKELVENSLDAGATNIDLKLK-----DYGVD--LIEVSDNGCGVEEENFEGLTLKHHTS 62

Query: 318 PDADDPNRIGRFGVGFKTGAM 338
              +  +       GF+  A+
Sbjct: 63  KIQEFADLTQVETFGFRGEAL 83
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query679
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 99.87
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 99.87
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 99.86
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 99.46
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 99.45
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.06
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 97.93
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 97.86
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 97.73
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 97.64
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 97.63
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 97.58
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 97.55
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 97.55
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 97.46
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 97.38
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 97.31
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 96.64
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 96.6
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 96.4
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 84.82
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 81.27
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7e-23  Score=202.75  Aligned_cols=165  Identities=24%  Similarity=0.310  Sum_probs=123.9

Q ss_pred             HHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHH
Q 005748          242 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ  305 (679)
Q Consensus       242 ~~L~slst~~i~~~f~AIaELIDNS~DA~A----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e  305 (679)
                      ..|+.+..+.|+.+...|+|||+||.||..                ....|.|..      +.+..+|+|.|||.||+++
T Consensus        12 ~ll~ll~~slYs~~~iflRELIqNa~DA~~k~~~~~~~~~~~~~~~~~~~i~i~~------d~~~~~l~I~DnGiGMt~~   85 (208)
T d1uyla_          12 QLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLTIVDTGIGMTKA   85 (208)
T ss_dssp             HHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEEECSCCCCHH
T ss_pred             HHHHHHHHhhcCCchHhHHHHHhhHHHHHHHHHHHhcCCchhccCCcccceEEee------cCCccEEEEEcCCccccHH
Confidence            466667777788888889999999999932                233454442      2357899999999999999


Q ss_pred             HHHhhhh-cccCCC--------CCCCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCccEEEcCcc
Q 005748          306 DVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS  376 (679)
Q Consensus       306 eL~~~l~-fG~S~k--------~~~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~  376 (679)
                      ++.+.+. +|.|.+        ...+...||||||||+|++| +++++.|.||+.+.....++|..  .+...+..+...
T Consensus        86 el~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGVGFyS~Fm-Vad~v~V~sk~~~~~~~~~~~~~--~~~~~~~~~~~~  162 (208)
T d1uyla_          86 DLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDDEQYAWESSA--GGSFTVRTDTGE  162 (208)
T ss_dssp             HHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTSCCEEEEECS--TTEEEEEECCSS
T ss_pred             HHHhhcccccccchHHHHHhhhhccchhhhhhcccceEEeee-ccCceEEEEecCCcchheeeecc--CCCceEEecccc
Confidence            9998764 555532        12356789999999999988 99999999998877554444432  333345544444


Q ss_pred             cCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005748          377 YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG  415 (679)
Q Consensus       377 ~e~~Gt~I~l~~~~~~-e~~~e~~L~~-I~kySpF~s~~I~  415 (679)
                      ...+||.|+|+++++. ++..++.++. |.+||.|..+||.
T Consensus       163 ~~~~GT~I~L~lk~d~~efl~~~~i~~likkys~fi~~PI~  203 (208)
T d1uyla_         163 PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT  203 (208)
T ss_dssp             CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEE
T ss_pred             cCCCCcEEEEEeCCChHHHcCHHHHHHHHHHHhcccCcCeE
Confidence            5568999999998765 6777888865 8899999998875
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure