Citrus Sinensis ID: 005763

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------68
MEMSYPSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
ccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccHHHHHHHHHHHccccccccEEEcccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEccccccccHHHccccccccccccccHHHHHccEEccccccHHHHHHHHHHHHHcccHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEcccccccccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHEEEEccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccHccccccHHHHHHHccHHHHccHHHHHHHHHHHHHHcHEEEEEEcccccccccccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHccHHHHHHHHHHHHHcccccccHHHHHcccccccccccccccEEEEEEEEccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccc
memsypstprwnierpfltgrfhqETKAASRFadsfsnngaemAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVnhvhgndtydstvTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFycqpmlgsMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVyegviddpygefFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMrecghsaqvptsenskllsfgsnhhYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQERSSLLKRMATLKGVeiktssdsvdleqpvsitglETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLtfevlepnwhVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISssidlpkleepsdgfsgsekfkRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQslgpilssssqaepYLTHLAQLVLGVGFDK
memsypstprwnierpFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQERSSLLKRMATLKgveiktssdsvdleqpvSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPsdgfsgsekfkrlkLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
MEMSYPSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
***********NIERPFLTGRFH********FADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQV******KLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKL**********ATLKGV**********LEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSID************************LSQVQKVMIRDATVTESILKFEREFNNE***************PYLTHLAQLVLGVG***
***SYPSTPRWNIERPFLTG*******************************VQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSI*********************************IRDATVTESILKFEREFNNELQSLGPILSS******YLTHLAQLVLGVGFDK
********PRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
*EMSYPSTPRWNIERPFLTGRFHQ*******************AIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGF*********KLRS*****KVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGF**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MEMSYPSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFxxxxxxxxxxxxxxxxxxxxxFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query678 2.2.26 [Sep-21-2011]
Q921G8905 Gamma-tubulin complex com yes no 0.828 0.620 0.381 1e-123
Q9BSJ2902 Gamma-tubulin complex com yes no 0.834 0.627 0.382 1e-122
Q5R5J6902 Gamma-tubulin complex com yes no 0.834 0.627 0.381 1e-121
Q9XYP7852 Gamma-tubulin complex com yes no 0.815 0.649 0.310 3e-85
Q9Y705784 Spindle pole body compone yes no 0.805 0.696 0.289 1e-63
Q95ZG3 1335 Spindle pole body compone yes no 0.575 0.292 0.305 3e-60
Q96CW5907 Gamma-tubulin complex com no no 0.716 0.535 0.264 8e-44
P58854905 Gamma-tubulin complex com no no 0.719 0.539 0.255 7e-43
O73787906 Gamma-tubulin complex com N/A no 0.712 0.533 0.253 9e-43
Q9USQ2832 Spindle pole body compone no no 0.594 0.484 0.269 1e-27
>sp|Q921G8|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2 SV=2 Back     alignment and function desciption
 Score =  441 bits (1135), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/618 (38%), Positives = 354/618 (57%), Gaps = 56/618 (9%)

Query: 6   PSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSAL 65
           P  P W  ERP L G F            S  ++   + IG      QE  V++DLL  L
Sbjct: 175 PVFPAWVYERPTLAGDF---------LIGSGLSSDTVLPIGTLPLASQESAVVEDLLYVL 225

Query: 66  VGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFV 125
           VG++GRYI+ +                TF VD ++DL+++E+  RI P+  S+    +F+
Sbjct: 226 VGVDGRYITAQPLAGR--------QNRTFLVDPNLDLSIRELVNRILPVAASYSTVTRFI 277

Query: 126 ESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQA 185
           E +S F+ G VNHA AA++R L+ +Y  +V QLE   R G LS+Q LWFY QP + ++  
Sbjct: 278 EEKSSFEYGQVNHALAAAMRTLVKEYLILVTQLEQLHRQGLLSLQKLWFYIQPAMRTIDI 337

Query: 186 VSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYE 245
           ++++          G + L+LL  ++    GD+  + L   +T+ AS  Y  ILE+W+Y 
Sbjct: 338 LASLATSVDKGECVGGSTLSLLHDRSFNYTGDSQAQELCLYLTKAASAPYFEILEKWIYR 397

Query: 246 GVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYS-LKDGIPSFLANIAGKILTTGKY 304
           G+I DPY EF + E+  L KE + +DY+ KYW QRY+ L   IPSFL  +AGKIL+TGKY
Sbjct: 398 GIIHDPYSEFMV-EEHELRKEKIQEDYNDKYWDQRYTVLPQQIPSFLQKVAGKILSTGKY 456

Query: 305 LNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLR 364
           LNV+RECGH    P ++  +++       Y+E ++ A+ +AS  LL+ + E  +L+  LR
Sbjct: 457 LNVVRECGHDVTCPVAK--EIIYTLKERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLR 514

Query: 365 SIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQERSSLLKRMATLK--------- 415
           SIKRY L+DQGDF VHFMD+  EEL K +++I + +L+    L  RM+T           
Sbjct: 515 SIKRYFLMDQGDFFVHFMDLTEEELRKPVEDIILTRLEALLELALRMSTANTDPFKDDLK 574

Query: 416 ----------------GVEIK-----TSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVI 454
                            +E K     T +D  +L    +++GLE FS  Y V+WPLS++I
Sbjct: 575 IELMPHDLITQLLRVLAIETKQEKAMTHADPTEL----TLSGLEAFSFDYMVKWPLSLII 630

Query: 455 SRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNA-SGTAISRSSLLCRSMLKFI 513
           +RKALT+YQM+FR +F+CKHVERQLC  W  ++ A+     S    + +  L + ML F+
Sbjct: 631 NRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHALHSAKWFAGAFTLRQRMLNFV 690

Query: 514 NSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVER 573
            ++ +Y+ FEV+EP WH++   L++A +ID+V+ HH  FLD CL++C+L  P+LLK   +
Sbjct: 691 QNIQYYMMFEVMEPTWHILEKNLKSASNIDDVLGHHTSFLDNCLKDCMLTNPELLKVFSK 750

Query: 574 LKSLCLQYAAATQWLISS 591
           L S+C+ +    Q    S
Sbjct: 751 LMSVCVMFTNCMQKFTQS 768
Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.
Mus musculus (taxid: 10090)
>sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2 Back     alignment and function description
>sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1 Back     alignment and function description
>sp|Q9XYP7|GCP2_DROME Gamma-tubulin complex component 2 homolog OS=Drosophila melanogaster GN=Grip84 PE=1 SV=2 Back     alignment and function description
>sp|Q9Y705|ALP4_SCHPO Spindle pole body component alp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp4 PE=1 SV=1 Back     alignment and function description
>sp|Q95ZG3|SPC97_DICDI Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97 PE=2 SV=2 Back     alignment and function description
>sp|Q96CW5|GCP3_HUMAN Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2 Back     alignment and function description
>sp|P58854|GCP3_MOUSE Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=2 SV=2 Back     alignment and function description
>sp|O73787|GCP3_XENLA Gamma-tubulin complex component 3 homolog OS=Xenopus laevis GN=tubgcp3 PE=1 SV=1 Back     alignment and function description
>sp|Q9USQ2|ALP6_SCHPO Spindle pole body component alp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp6 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query678
255578011713 gamma-tubulin complex component, putativ 0.985 0.936 0.752 0.0
296087642702 unnamed protein product [Vitis vinifera] 0.980 0.947 0.781 0.0
359488832681 PREDICTED: gamma-tubulin complex compone 0.949 0.945 0.768 0.0
224112407711 tubulin gamma complex-associated protein 0.967 0.922 0.744 0.0
449461078707 PREDICTED: spindle pole body component 9 0.969 0.929 0.753 0.0
18418288678 Spc97 / Spc98 family of spindle pole bod 0.949 0.949 0.715 0.0
30686344679 Spc97 / Spc98 family of spindle pole bod 0.949 0.948 0.714 0.0
297807763678 hypothetical protein ARALYDRAFT_488606 [ 0.949 0.949 0.714 0.0
9755764683 spindle pole body protein-like [Arabidop 0.951 0.944 0.709 0.0
356560679664 PREDICTED: gamma-tubulin complex compone 0.921 0.941 0.736 0.0
>gi|255578011|ref|XP_002529877.1| gamma-tubulin complex component, putative [Ricinus communis] gi|223530653|gb|EEF32527.1| gamma-tubulin complex component, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1061 bits (2745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/712 (75%), Positives = 591/712 (83%), Gaps = 44/712 (6%)

Query: 4   SYPSTPRWNIERPFLTGRFHQETKAASRFADS----FSNNGAEMAIGCYDAGVQELLVID 59
           S PSTPRWN+ERPFLTGRF QETKA SR  DS    FS  G + AIGCYDA VQEL+VID
Sbjct: 9   SCPSTPRWNVERPFLTGRFRQETKATSRLTDSKGFSFSTPGLDKAIGCYDAAVQELIVID 68

Query: 60  DLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFV 119
           DL+SALVGIEGRYISIKR    VHG +     +TFQ+DASMDLALQE+AKR+FPLCES++
Sbjct: 69  DLMSALVGIEGRYISIKR----VHGKE---DDITFQLDASMDLALQELAKRMFPLCESYL 121

Query: 120 LTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPM 179
           L  QF+ESRSQFKNG+VNHAFAA+LRALLLDY+AMVAQLEHQFRLGRLSIQGLWFYCQPM
Sbjct: 122 LIDQFIESRSQFKNGVVNHAFAAALRALLLDYQAMVAQLEHQFRLGRLSIQGLWFYCQPM 181

Query: 180 LGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGIL 239
           + SMQA+S V+ KASANNFTGSAVLNLLQSQAKAMAGDN VRSLLEKMTQ ASNAYLGIL
Sbjct: 182 MSSMQALSIVLKKASANNFTGSAVLNLLQSQAKAMAGDNAVRSLLEKMTQSASNAYLGIL 241

Query: 240 ERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKIL 299
           ERWVYEGVIDDPY EFFIAE+KSL KESLTQDYDAKYW  RYSLK+GIPSFLANIAG IL
Sbjct: 242 ERWVYEGVIDDPYSEFFIAENKSLQKESLTQDYDAKYWSHRYSLKEGIPSFLANIAGTIL 301

Query: 300 TTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDL 359
           TTGKYLNVMRECGH+ QVP+SE SKL+SFGSNHHYLEC+K AY+FAS ELL+LIKE+YDL
Sbjct: 302 TTGKYLNVMRECGHNVQVPSSEISKLISFGSNHHYLECIKAAYDFASSELLDLIKEKYDL 361

Query: 360 MGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQERSSLLKR--------- 410
            GKLRS+K YLLLDQGDFLVHFMDIAREEL K+LDEI+VEKLQ   S+  +         
Sbjct: 362 TGKLRSVKHYLLLDQGDFLVHFMDIAREELTKRLDEISVEKLQVAFSIFIQNENNQKKFL 421

Query: 411 MATLKG------------------------VEIKTSSDSVDLEQPVSITGLETFSLSYKV 446
           M T+                          +E +  SDS D+E+P+SITGL+TFSLSYKV
Sbjct: 422 MLTILSESVLLFSSPYGLALRTTAAAADPYLETRVVSDSKDMEEPISITGLDTFSLSYKV 481

Query: 447 QWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLC 506
           QWPLSIVISRKALTKYQ++FR LF CKHV+RQLCGAWQVHQG RA    GTAI RS+LLC
Sbjct: 482 QWPLSIVISRKALTKYQLIFRFLFCCKHVDRQLCGAWQVHQGVRALTMRGTAIPRSALLC 541

Query: 507 RSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPD 566
           RSMLKFINSLLHYLTFEV+EPNWH+M+NRLQTAKSIDEVIQ+HD FLDKCLRECLL  P+
Sbjct: 542 RSMLKFINSLLHYLTFEVIEPNWHMMYNRLQTAKSIDEVIQYHDMFLDKCLRECLLLSPE 601

Query: 567 LLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVM 626
           LLKKVERLKSLCLQYAAATQWLISSSID+PKLEEPSD    SEK K+   R  SQ  K+ 
Sbjct: 602 LLKKVERLKSLCLQYAAATQWLISSSIDIPKLEEPSDVSFRSEKSKKRISRVPSQALKMT 661

Query: 627 IRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK 678
               TVTESILKFEREFN ELQSLGPILS +SQAEPYLTHLAQ +LG+  D+
Sbjct: 662 TGVTTVTESILKFEREFNAELQSLGPILSRNSQAEPYLTHLAQWILGIKSDQ 713

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296087642|emb|CBI34898.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359488832|ref|XP_002273947.2| PREDICTED: gamma-tubulin complex component 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224112407|ref|XP_002316177.1| tubulin gamma complex-associated protein [Populus trichocarpa] gi|222865217|gb|EEF02348.1| tubulin gamma complex-associated protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449461078|ref|XP_004148270.1| PREDICTED: spindle pole body component 97-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18418288|ref|NP_568346.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|13430652|gb|AAK25948.1|AF360238_1 putative spindle pole body protein [Arabidopsis thaliana] gi|14532826|gb|AAK64095.1| putative spindle pole body protein [Arabidopsis thaliana] gi|332005040|gb|AED92423.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30686344|ref|NP_850838.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|332005039|gb|AED92422.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297807763|ref|XP_002871765.1| hypothetical protein ARALYDRAFT_488606 [Arabidopsis lyrata subsp. lyrata] gi|297317602|gb|EFH48024.1| hypothetical protein ARALYDRAFT_488606 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|9755764|emb|CAC01736.1| spindle pole body protein-like [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356560679|ref|XP_003548617.1| PREDICTED: gamma-tubulin complex component 2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query678
TAIR|locus:2178930679 AT5G17410 [Arabidopsis thalian 0.653 0.652 0.711 2.7e-267
UNIPROTKB|F1SCV1906 TUBGCP2 "Uncharacterized prote 0.528 0.395 0.415 1.9e-124
UNIPROTKB|Q9BSJ2902 TUBGCP2 "Gamma-tubulin complex 0.530 0.399 0.405 3.1e-122
UNIPROTKB|Q5ZKY5895 TUBGCP2 "Uncharacterized prote 0.528 0.4 0.4 6.5e-122
UNIPROTKB|E1BZL5906 TUBGCP2 "Uncharacterized prote 0.528 0.395 0.398 5.7e-121
UNIPROTKB|E1C2Y1906 TUBGCP2 "Uncharacterized prote 0.528 0.395 0.398 5.7e-121
ZFIN|ZDB-GENE-031118-150882 tubgcp2 "tubulin, gamma comple 0.530 0.408 0.400 6.5e-120
UNIPROTKB|J9P5U2704 TUBGCP2 "Uncharacterized prote 0.516 0.497 0.414 1.1e-114
RGD|1309597905 Tubgcp2 "tubulin, gamma comple 0.561 0.420 0.399 2.3e-114
MGI|MGI:1921487905 Tubgcp2 "tubulin, gamma comple 0.561 0.420 0.394 2.3e-114
TAIR|locus:2178930 AT5G17410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1605 (570.0 bits), Expect = 2.7e-267, Sum P(3) = 2.7e-267
 Identities = 326/458 (71%), Positives = 374/458 (81%)

Query:     3 MSYPSTPRWNIERPFLTGRFHQETKAASRFADS--F-----SNNGAEMAIGCYDAGVQEL 55
             +S P+TPRWN +RPFLTGRFHQET+A+S+FADS  F     S++G E AIGCYD  VQEL
Sbjct:     7 ISCPTTPRWNQDRPFLTGRFHQETRASSKFADSKRFTLDSSSSSGVEQAIGCYDTPVQEL 66

Query:    56 LVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLC 115
             +VIDDLLSALVGIEGRYISIKR     HG +  DS + FQVD SMDLALQE+AKRIFPLC
Sbjct:    67 IVIDDLLSALVGIEGRYISIKR----FHGKE--DS-IAFQVDPSMDLALQELAKRIFPLC 119

Query:   116 ESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFY 175
             E ++L  QFVES SQFKNGLVNHAFAA+LRALLLDY+AMVAQLEHQFRLGRLSIQGLWFY
Sbjct:   120 EYYLLIDQFVESSSQFKNGLVNHAFAAALRALLLDYQAMVAQLEHQFRLGRLSIQGLWFY 179

Query:   176 CQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAY 235
             CQPM+GSM+A++AVI +AS   F GS VLNLLQSQAKAMAGDN+VRSLLEKMT+CASNAY
Sbjct:   180 CQPMMGSMRALAAVIQQASTKQFVGSGVLNLLQSQAKAMAGDNSVRSLLEKMTECASNAY 239

Query:   236 LGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIA 295
             L ILERWVYEG+IDDPYGEFFIAE++SL KESL+QD  AKYW QRYSLKD IP FLANIA
Sbjct:   240 LSILERWVYEGIIDDPYGEFFIAENRSLKKESLSQDSTAKYWSQRYSLKDTIPGFLANIA 299

Query:   296 GKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKE 355
               ILTTGKYLNVMRECGH+ QVP SE SKL  FGSNHHYLEC+K A+EFAS EL+NLIK+
Sbjct:   300 ATILTTGKYLNVMRECGHNVQVPISERSKLTIFGSNHHYLECIKAAHEFASIELVNLIKD 359

Query:   356 RYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQERSSL-LKRMATL 414
             +YDL+G+LRSIK YLLLDQGDFLVHFMDIAREEL K++ EI+VEKLQ    L L+  A  
Sbjct:   360 KYDLVGRLRSIKHYLLLDQGDFLVHFMDIAREELNKKVHEISVEKLQSLLDLALRTTAAA 419

Query:   415 KGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSI 452
                  +  +  VD    ++  G+   + S  ++ P+SI
Sbjct:   420 ADPRHEDLTCCVDRASLLTTLGMHKDTDSNSIEDPMSI 457
GO:0000226 "microtubule cytoskeleton organization" evidence=IEA
GO:0000922 "spindle pole" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005815 "microtubule organizing center" evidence=IEA
UNIPROTKB|F1SCV1 TUBGCP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BSJ2 TUBGCP2 "Gamma-tubulin complex component 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKY5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZL5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C2Y1 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031118-150 tubgcp2 "tubulin, gamma complex associated protein 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|J9P5U2 TUBGCP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1309597 Tubgcp2 "tubulin, gamma complex associated protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1921487 Tubgcp2 "tubulin, gamma complex associated protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query678
pfam04130528 pfam04130, Spc97_Spc98, Spc97 / Spc98 family 1e-128
>gnl|CDD|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family Back     alignment and domain information 
 Score =  389 bits (1000), Expect = e-128
 Identities = 168/539 (31%), Positives = 260/539 (48%), Gaps = 48/539 (8%)

Query: 60  DLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFV 119
           DLL AL+G+E  Y              +    +   +   +  +L+ +  RI  L   + 
Sbjct: 1   DLLFALLGLESLYFRYD--------KSSESFKIAPNISGLLSPSLRSLLNRILELGTLYR 52

Query: 120 LTGQFVE--SRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFR-LGRLSIQGLWFYC 176
              +F+E  S S    G V  A AA+LR +L +Y  +VAQLE +    G L++  L    
Sbjct: 53  RLREFIESISSSSSLYGPVLQALAAALREILNEYLQLVAQLESELLSNGTLTLLQLLAEL 112

Query: 177 QPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYL 236
           QP +  ++ ++ ++ +  + +  G  +L+ L  +  +  GD  +R LL ++   AS  YL
Sbjct: 113 QPAILLLRLLAEIVEEILSKSLKGGQLLSSLYERIASQTGDPDLRELLLRLLNAASQPYL 172

Query: 237 GILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KDGIPSFL-ANI 294
            +L RW+  G +DDPYGEFFI E++S   E +  D   +YW +RY+L +D +PSFL   +
Sbjct: 173 QMLSRWLLHGELDDPYGEFFIKENES---EEVLSDDSDEYWEERYTLREDMLPSFLPKEL 229

Query: 295 AGKILTTGKYLNVMRECGHSAQVP------------TSENSKLLSFGSNHHYLECVKVAY 342
           A KIL  GK LN +REC  S  +                  KL S          +  AY
Sbjct: 230 ARKILEIGKSLNFLRECCKSHPLAKDQSLALSLREALVSLLKLFSSLDTSALELLIDSAY 289

Query: 343 EFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQ 402
             AS  LL+L+ E YDL+G L+++K Y LL +GDF+  F++   +EL K  + ++   LQ
Sbjct: 290 LEASKSLLDLLLEEYDLLGHLQALKDYFLLGRGDFISSFLESLFDELDKPANSLSDHALQ 349

Query: 403 ERSSLLKRMATLK-----------------GVEIKTSSDSVDLEQPVSITGLETFSLSYK 445
                  R ++                     E     D   LE    ++GL+  +L YK
Sbjct: 350 SLLQEALRSSSSDDDPASSDLDELETKKSDSSETLNRLDVSSLELSSGLSGLDALTLDYK 409

Query: 446 VQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFN---ASGTAISRS 502
           V WPLS++++ +AL KYQ +FR L   K  E  L   W+     R       +   + + 
Sbjct: 410 VPWPLSLILTPEALKKYQRIFRFLLRLKRAEYLLNKLWKELNKRRRLGSTRRNEPLLRKI 469

Query: 503 SLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECL 561
            LL   ML F+NSL +Y+  +V+E NW  +  +LQ AK +DE+I  H+ +LD  L  C 
Sbjct: 470 WLLRFQMLHFVNSLQYYIQVDVIESNWQKLQEQLQKAKDLDELIAAHEDYLDSILSGCF 528

The spindle pole body (SPB) functions as the microtubule-organising centre in yeast. Members of this family are spindle pole body (SBP) components such as Spc97 and Spc98 that form a complex with gamma-tubulin. This family of proteins includes the grip motif 1 and grip moti 2. Length = 528

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 678
KOG2001734 consensus Gamma-tubulin complex, DGRIP84/SPC97 com 100.0
KOG2065679 consensus Gamma-tubulin ring complex protein [Cyto 100.0
PF04130542 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR00 100.0
KOG2000879 consensus Gamma-tubulin complex, DGRIP91/SPC98 com 100.0
KOG43441121 consensus Uncharacterized conserved protein [Funct 99.94
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-104  Score=835.63  Aligned_cols=639  Identities=42%  Similarity=0.676  Sum_probs=540.9

Q ss_pred             CCCCCCCCCcccCCCc-CC-ccccchhhh-----hh-hccc-ccCCcccccCCCCCchhhHHHHHHHHHHHhcCCCCCce
Q 005763            3 MSYPSTPRWNIERPFL-TG-RFHQETKAA-----SR-FADS-FSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYI   73 (678)
Q Consensus         3 ~~~p~~p~w~~~~~~~-~~-~~~~~~~~~-----~~-~~~~-~~~~~~~~~~~~~~~~~qE~~lv~dLL~~l~G~~g~~i   73 (678)
                      +..|..|.|...||++ || .+++.....     +. ...+ ..+.....+++.+|.+.||..+++||++|+.|++|+|+
T Consensus        34 i~~~~~s~~~~~rp~~~tG~~~~~s~~~~l~~~~s~r~~~~~~~~~~~~~~is~~~lp~QE~~li~dLl~af~Gv~~ryV  113 (734)
T KOG2001|consen   34 INPKEESELEEKRPALDTGSVQHQSLVSDLVNLLSKRILEGVGIDYFTDYEISDMPLPSQESKLIDDLLYAFVGVEGRYV  113 (734)
T ss_pred             cCccccccccccCcCCCcCccchhhhhhccccchhhhhhhccccccccccCcccCCchhHHHHHHHHHHHHHcCCCccee
Confidence            5678889999999999 77 333332211     11 1112 23456677899999999999999999999999999999


Q ss_pred             eeccccCcCCCCCCC---CCccceEecCCCCHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Q 005763           74 SIKRRVNHVHGNDTY---DSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLD  150 (678)
Q Consensus        74 ~~~~~~~~~~~~~~~---~~~~~f~v~~~~~~sl~~l~~~il~lg~~~~~l~~Fv~~~~~~~~g~v~~Ala~al~~~L~~  150 (678)
                      +++.    ..++...   .....|.|.|+.+-++++++++++|+|.+|..+++||++++.+..|.|++|+|+|+++++.+
T Consensus       114 ~~Q~----~~~s~~~~~~~~~~~F~v~~~fd~~ir~la~eilpl~~yy~~v~~fie~~s~f~~G~vn~alaaAlr~ll~d  189 (734)
T KOG2001|consen  114 SPQY----MIISEAYEKWIDSIFFMVLPRFDLAIRELAEEILPLASYYLLVQDFIEETSFFEYGQVNHALAAALRELLYD  189 (734)
T ss_pred             ecch----hhhhhhhhhhccCcceeeccchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHH
Confidence            9965    2222110   13578999999999999999999999999999999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCchHHHHHhhhhhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 005763          151 YEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQC  230 (678)
Q Consensus       151 y~~~v~~lE~~~~~~~lsL~~L~~~~~~~~~~l~~L~~iv~~~~~~~~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~ll~~  230 (678)
                      |+..|.++|++.+.+.+|+++||++++|++..++.++..+..+..+.++||.+|+.|++++..+.||+.++.++.++++.
T Consensus       190 yy~li~qlE~e~R~~~lslq~L~~y~qP~m~~m~~l~~~~~~~~~~~~~gg~vls~l~~~~~~~~Gd~~a~~ll~~l~r~  269 (734)
T KOG2001|consen  190 YYELISQLEQELRTNRLSLQDLWFYMQPMMRSMRRLAVAATTTVKKVCKGGAVLSLLQSSIKENLGDRSARMLLKKLLRN  269 (734)
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhhccccCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998888888889999999999999999899999999999999999


Q ss_pred             HHHHHHHHHHHHHhcceecCCCCcceEeeCCCcccccccccchhhhhcccccc-ccCCCcchHHHHHHHHHhhhHHHHHH
Q 005763          231 ASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KDGIPSFLANIAGKILTTGKYLNVMR  309 (678)
Q Consensus       231 ~~~p~~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~~~~~l~~d~~~~~W~~~y~l-~~~vP~Fl~~~a~~Il~~GK~l~~lr  309 (678)
                      ++.||++|+++||+.|.++|||+||||.++ .++++.+++|+.++||++||+| ++.+|+|+.+.|+|||.||||+|++|
T Consensus       270 as~~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~-~~~k~~l~ed~~d~YW~~RY~ir~dqiP~fL~~~adkIL~tGKYLNVvR  348 (734)
T KOG2001|consen  270 ASQPYCTMLEEWIYQGIINDPYQEFMIYDN-LITKEDLPEDYTDKYWDQRYTIRKDQIPGFLLSEADKILRTGKYLNVVR  348 (734)
T ss_pred             hcchHHHHHHHHHhcccccCchHhHhhhhc-chhhhcCchhhhHHHHHHhheechhhcchHHHHHHHHHHHhhhHHHHHH
Confidence            999999999999999999999999999999 7788889999999999999999 78999999999999999999999999


Q ss_pred             HhCCCCCCCccccccc-cccCCccchHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 005763          310 ECGHSAQVPTSENSKL-LSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREE  388 (678)
Q Consensus       310 ~~~~~~~~p~~e~~~~-~~f~~~~~~~~~I~~~~~~~s~~ll~ll~~~~~L~~hL~~lk~yfLL~~Gdf~~~f~~~~~~~  388 (678)
                      +||+.+++|...+... ...+.+..+.+.|+++|.+|+..++++|+++++|.+||+++|+||||.+|||+.+|+|.+.++
T Consensus       349 eC~~~v~~p~~~n~~~~~~~~~e~~~~e~I~~ay~~A~~~lL~ll~~e~dL~~hLrslK~YfLldQgdF~~~Fld~~~eE  428 (734)
T KOG2001|consen  349 ECGKIVTIPQSSNEINDPADLMESNHEEYIKKAYEFANEILLKLLFEEYDLVGHLRSLKHYFLLDQGDFFVTFLDKAEEE  428 (734)
T ss_pred             HhCccCCCCcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence            9999998886543111 112234789999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccccccchhhhhchHHHHHH-Hhccc-c-----ccccc--------------CC----CCCCcCCC---CCcccceeE
Q 005763          389 LMKQLDEITVEKLQERSSLLKR-MATLK-G-----VEIKT--------------SS----DSVDLEQP---VSITGLETF  440 (678)
Q Consensus       389 L~~~~~~i~~~~l~~~~~L~~~-lss~~-~-----~d~~~--------------~~----~~~~~~~~---~~~~~~d~l  440 (678)
                      |.|+.+.+++.+|++.++++.+ .+... +     +-+..              +.    ++....+|   ..++|++++
T Consensus       429 L~K~v~~i~p~kLqsLL~laLr~~s~a~~Dp~k~~L~i~~~~~~L~~ql~~~l~ie~~e~~ans~~dP~~~l~lsGlE~f  508 (734)
T KOG2001|consen  429 LTKNVENISPEKLQSLLDLALREQSEAANDPMKEDLKICVDPTDLITQLSHILAIEPEEESANSQADPLEHLDLSGLEAF  508 (734)
T ss_pred             HhcchhhcCHHHHHHHHHHHHHhhhcccCCchhhheeeeecHhhHHHHHHHHHhcCccccccccccCcchhccccchhhh
Confidence            9999999999999999999888 44332 1     11100              01    11123344   578999999


Q ss_pred             EEEeecCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCch-hHHHHHHHHHHHHHHHHHHHHHH
Q 005763          441 SLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASG-TAISRSSLLCRSMLKFINSLLHY  519 (678)
Q Consensus       441 ~L~Y~v~wPL~lIit~~~l~~Y~~iFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~~-~~~~~~~~lr~~m~~Fv~~l~~Y  519 (678)
                      .++|+|||||++||++++|.|||+|||++|.|||++++||.+|..++..|..+..+ .+.+.++.+|++|++||+++.+|
T Consensus       509 af~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~~Y  588 (734)
T KOG2001|consen  509 AFDYEVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIEYY  588 (734)
T ss_pred             eeeeccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998877665543 56778899999999999999999


Q ss_pred             HHhhhccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 005763          520 LTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLP-DLLKKVERLKSLCLQYAAATQWLISSSIDLPKL  598 (678)
Q Consensus       520 ~~~~VIe~~w~~f~~~l~~a~~~d~l~~~H~~fL~~i~~~cfL~~~-~l~~~l~~ll~~~~~F~~~~~~~~~~~~~~~~~  598 (678)
                      ++.+||||+|+.|+..+++++++|+|++.|+.|||.|++.|+|+.+ .+++.+.++..+|+.||+.++++++.. ...  
T Consensus       589 ~~~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fld~CLk~ClL~~~~~llk~~~kL~~vCl~f~~~~q~~~~~~-~~~--  665 (734)
T KOG2001|consen  589 MTQEVIEPNWHSLEKCLKNARNVDEVLNEHEGFLDTCLKRCLLTLSPLLLKSFSKLYKVCLMFCSFTQKLTQSD-PTD--  665 (734)
T ss_pred             HHHHhhcchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccc-chh--
Confidence            9999999999999999999999999999999999999999999976 899999999999999999999987321 011  


Q ss_pred             CCCCCCCCChhHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 005763          599 EEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSS  657 (678)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~l~~~l~~~  657 (678)
                      +.....+ .+++ ..++ + +    +++.--+.+.+.+.++++.|++++..|+..|++.
T Consensus       666 ~~~~~~~-~~~~-d~~~-k-~----~~t~li~~leei~~~~~~~f~~~l~~L~~rlsk~  716 (734)
T KOG2001|consen  666 EEKNSVG-HPQF-DEGR-K-E----DDTLLISKLEEIISNADKNFRDCLKNLLQRLSKF  716 (734)
T ss_pred             hhhcccc-ccch-hhhh-h-h----hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHcccc
Confidence            1000011 0111 0000 0 0    0110122345667779999999999999999943

>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton] Back     alignment and domain information
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin Back     alignment and domain information
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton] Back     alignment and domain information
>KOG4344 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query678
3rip_A677 Crystal Structure Of Human Gamma-Tubulin Complex Pr 1e-17
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4 (Gcp4) Length = 677 Back     alignment and structure 
Iteration: 1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 117/524 (22%), Positives = 207/524 (39%), Gaps = 84/524 (16%)
Query: 133 NGLVNHAFAASLRALLLDYEAMVAQLEHQFRLG--RLSIQGLWFYCQPMLGSMQAVSAVI 190
           +G+   AF   L ++L  Y   +  LE +F LG   LSI  + ++         +V  V+
Sbjct: 82  HGIYLRAFCTGLDSVLQPYRQALLDLEQEF-LGDPHLSISHVNYFLDQFQLLFPSVMVVV 140
Query: 191 HKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD 250
            +  +    G  +L  +   +    G   VRS LEK+           L  W+  G++ D
Sbjct: 141 EQIKSQKIHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLD 198
Query: 251 PYGEFFIAEDKSLLKESLTQDYD----------AKYWRQ------------------RYS 282
            + EFFI +  S    S   + D           K  R+                  ++S
Sbjct: 199 QHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFS 258
Query: 283 LK-DGIPSFL-ANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLL-----SFGSNHHYL 335
           L+ + +PS++   +A KIL  G+ + +      +  V  +    +L     +F +  H L
Sbjct: 259 LRVEILPSYIPVRVAEKILFVGESVQMFE----NQNVNLTRKGSILKNQEDTFAAELHRL 314
Query: 336 ------------ECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMD 383
                       + V       +  L  L+ E  DL+G+L+ IK + LL +G+    F+D
Sbjct: 315 KQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFID 374
Query: 384 IAREELMKQLDEITVEKLQ---------------ERSSLLKRMATLKGVEIK-------- 420
            A+  L      +T   +                    LL       G E K        
Sbjct: 375 TAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHKDATQAREG 434
Query: 421 TSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLC 480
            S ++   E P S  G     LSYKVQWPL I+ +   L KY +VF+ L   + V+ +L 
Sbjct: 435 PSRETSPREAPAS--GWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQ 492
Query: 481 GAWQVHQGARAFNASGTAISRSSLLCRSMLKF-INSLLHYLTFEVLEPNWHVMHNRLQTA 539
             W +    +   ++ T   +  L  R+ + F +++L +YL  +VLE  +  + +++ + 
Sbjct: 493 HCWALQMQRKHLKSNQTDAIKWRL--RNHMAFLVDNLQYYLQVDVLESQFSQLLHQINST 550
Query: 540 KSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAA 583
           +  + +   HD FL   L +  + L  +   +  +  LC  + +
Sbjct: 551 RDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCS 594

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query678
3rip_A677 Gamma-tubulin complex component 4; helix bundles, 1e-92
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Length = 677 Back     alignment and structure
 Score =  300 bits (769), Expect = 1e-92
 Identities = 129/699 (18%), Positives = 235/699 (33%), Gaps = 136/699 (19%)

Query: 57  VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVD---ASMDLALQEMAKRIFP 113
           +I +LL AL G  G                T++     QV      +  +   +  R+  
Sbjct: 1   MIHELLLALSGYPGSIF-------------TWNKRSGLQVSQDFPFLHPSETSVLNRLCR 47

Query: 114 LCESFVLTGQFVESRSQF---------------KNGLVNHAFAASLRALLLDYEAMVAQL 158
           L   ++   +F+E  +                  +G+   AF   L ++L  Y   +  L
Sbjct: 48  LGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDL 107

Query: 159 EHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGD 217
           E +F     LSI  + ++         +V  V+ +  +    G  +L  +   +    G 
Sbjct: 108 EQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKHS--CGGL 165

Query: 218 NTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAK-- 275
             VRS LEK+           L  W+  G++ D + EFFI +  S    S   + D +  
Sbjct: 166 PPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDL 225

Query: 276 --------------------------YWRQRYSL-KDGIPSFL-ANIAGKILTTGKYLNV 307
                                        +++SL  + +PS++   +A KIL  G+ + +
Sbjct: 226 GIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQM 285

Query: 308 MRECGHSAQVP-------------TSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIK 354
                 +                      K     S   + + V       +  L  L+ 
Sbjct: 286 FENQNVNLTRKGSILKNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMV 345

Query: 355 ERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQE------RSSLL 408
           E  DL+G+L+ IK + LL +G+    F+D A+  L      +T   +           LL
Sbjct: 346 EESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLL 405

Query: 409 KRMATLK---------------GVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIV 453
                L                  + +         +    +G     LSYKVQWPL I+
Sbjct: 406 DDDNLLPLLHLTIEYHGKEHKDATQAREGPSRETSPREAPASGWAALGLSYKVQWPLHIL 465

Query: 454 ISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFI 513
            +   L KY +VF+ L   + V+ +L   W +    +    S    +    L   M   +
Sbjct: 466 FTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLK-SNQTDAIKWRLRNHMAFLV 524

Query: 514 NSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVER 573
           ++L +YL  +VLE  +  + +++ + +  + +   HD FL   L +  + L  +   +  
Sbjct: 525 DNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNE 584

Query: 574 LKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVT 633
           +  LC  + +     +                                       D    
Sbjct: 585 ILDLCHSFCSLVSQNLGPL------------------------------------DERGA 608

Query: 634 ESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVL 672
             +    + F+ +   L  ILSS    +   + LAQL+L
Sbjct: 609 AQLSILVKGFSRQSSLLFKILSSVRNHQ-INSDLAQLLL 646
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query678
3rip_A677 Gamma-tubulin complex component 4; helix bundles, 100.0
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.7e-90  Score=796.87  Aligned_cols=568  Identities=22%  Similarity=0.361  Sum_probs=468.5

Q ss_pred             HHHHHHHHhcCCCCCceeeccccCcCCCCCCCCCccceEecC---CCCHHHHHHHHHHHHHHhHHHHHHHHHhhhcC---
Q 005763           57 VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDA---SMDLALQEMAKRIFPLCESFVLTGQFVESRSQ---  130 (678)
Q Consensus        57 lv~dLL~~l~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~---~~~~sl~~l~~~il~lg~~~~~l~~Fv~~~~~---  130 (678)
                      |++|||++|+|++|.||++.+             ..+|+|++   .+++|+++++++++++|.+|+.|++|++....   
T Consensus         1 Ml~dlL~~L~G~~g~~i~~~~-------------~~~f~v~~~~~~l~~s~r~ll~~l~~lg~~y~~l~~fv~~~~~~~~   67 (677)
T 3rip_A            1 MIHELLLALSGYPGSIFTWNK-------------RSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQ   67 (677)
T ss_dssp             CHHHHHHHHTTCCCSSSEEET-------------TTEEECCSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred             ChHHHHHHHcCCCCCceEecC-------------CCceeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            589999999999999999865             14688988   56899999999999999999999999996432   


Q ss_pred             -----C-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchHHHHHhhhhhHHHHHHHHHHHHHhhcCC
Q 005763          131 -----F-------KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANN  197 (678)
Q Consensus       131 -----~-------~~g~v~~Ala~al~~~L~~y~~~v~~lE~~~~~-~~lsL~~L~~~~~~~~~~l~~L~~iv~~~~~~~  197 (678)
                           +       ..|+|++|||++|+++|++|+..|+++|+++.. +.+||+.++..++|+...|+.|++|+.++..+.
T Consensus        68 ~~~~~~~~~~~~~~~g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~  147 (677)
T 3rip_A           68 QQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQK  147 (677)
T ss_dssp             -----------CCSCSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                 1       169999999999999999999999999999854 679999999999999999999999999987678


Q ss_pred             CchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCcceEeeCCCccccccc--------
Q 005763          198 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLT--------  269 (678)
Q Consensus       198 ~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~ll~~~~~p~~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~~~~~l~--------  269 (678)
                      ++||++|+.||+++  .+||+.+++++.+|+..|++||+++|..||.+|++.|||+||||++++...++...        
T Consensus       148 ~~G~~lL~~L~~~~--~~Gd~~~~~~~~~Ll~~~~~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~~~~~~~~~~~  225 (677)
T 3rip_A          148 IHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDL  225 (677)
T ss_dssp             CCTHHHHHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCSSEEEC-----------------
T ss_pred             CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCCcchheeEecccccccccccccccccc
Confidence            99999999999997  59999999999999999999999999999999999999999999998654321000        


Q ss_pred             -------------------c-cchhhhhcccccc-ccCCCcchHH-HHHHHHHhhhHHHHHHHhCCCCC-----CCcccc
Q 005763          270 -------------------Q-DYDAKYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQ-----VPTSEN  322 (678)
Q Consensus       270 -------------------~-d~~~~~W~~~y~l-~~~vP~Fl~~-~a~~Il~~GK~l~~lr~~~~~~~-----~p~~e~  322 (678)
                                         . +....+|+.+|+| .+++|+|+++ +|+|||.|||++|+||+|+....     ++..+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~~~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~~~~~~~~~~~~  305 (677)
T 3rip_A          226 GIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQED  305 (677)
T ss_dssp             ---------------------------CCCCEEECGGGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC---CTTCSHHH
T ss_pred             ccccccccccchhhhhhcccccccccchhcceeecHhhCcCccCHHHHHHHHHhhHHHHHHHccCCCCCcccccccchHH
Confidence                               0 0112479999999 6889999987 99999999999999999765421     010000


Q ss_pred             ------ccccccC--CccchHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcccc
Q 005763          323 ------SKLLSFG--SNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLD  394 (678)
Q Consensus       323 ------~~~~~f~--~~~~~~~~I~~~~~~~s~~ll~ll~~~~~L~~hL~~lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~  394 (678)
                            ..+...+  +...|...|+++|..+|+.|+++|+++++|.+||+++|+||||++|||+..|++.++++|.+++.
T Consensus       306 ~~~~~l~~L~~~~~~~~~~~e~~I~~~~~~as~~Ll~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~  385 (677)
T 3rip_A          306 TFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPT  385 (677)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCC
T ss_pred             HHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Confidence                  0011110  11467889999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccchhhhhchHHHHHHHhcccccccccC-------CC--C------------CCcCCCCCcccceeEEEEeecCCcccee
Q 005763          395 EITVEKLQERSSLLKRMATLKGVEIKTS-------SD--S------------VDLEQPVSITGLETFSLSYKVQWPLSIV  453 (678)
Q Consensus       395 ~i~~~~l~~~~~L~~~lss~~~~d~~~~-------~~--~------------~~~~~~~~~~~~d~l~L~Y~v~wPL~lI  453 (678)
                      .++..+|+..+..+.+.+..++.+....       .+  .            .....+.+..|||+|.|+|+|||||++|
T Consensus       386 ~~~~~~L~~~L~~a~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~L~Y~v~~PL~li  465 (677)
T 3rip_A          386 AVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHKDATQAREGPSRETSPREAPASGWAALGLSYKVQWPLHIL  465 (677)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCCCTTTGGGEEEEECCCC-----------------------CCTTTTEEEEECCCTTGGGT
T ss_pred             ccCHHHHHHHHHHHHHHccCCchhhHhcceEEeeccccccccccccccccccccccccCCccchheEEEEEeCCChHHHh
Confidence            8888888877766665443332211100       00  0            0011234578999999999999999999


Q ss_pred             eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHH
Q 005763          454 ISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMH  533 (678)
Q Consensus       454 it~~~l~~Y~~iFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~w~~f~  533 (678)
                      ||+++|.+|++||+|||++||+++.|+++|+.++..+........+.+ +.+|++|+|||+++++|++++||+++|.+|+
T Consensus       466 it~~~l~~Y~~iF~~Ll~lkr~~~~L~~~w~~~~~~~~~~~~~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w~~~~  544 (677)
T 3rip_A          466 FTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQFSQLL  544 (677)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGCCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999987755433222233344 8999999999999999999999999999999


Q ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCChhHHHH
Q 005763          534 NRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKR  613 (678)
Q Consensus       534 ~~l~~a~~~d~l~~~H~~fL~~i~~~cfL~~~~l~~~l~~ll~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  613 (678)
                      +++++++|+|+|+++|++||++|+++|||+.+++.++|.+|+++|++||..+++..       +..              
T Consensus       545 ~~l~~~~~~d~l~~~H~~~L~~i~~~c~L~~~~v~~~l~~il~~~~~F~~~~~~~~-------~~~--------------  603 (677)
T 3rip_A          545 HQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQNL-------GPL--------------  603 (677)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCC---------C--------------
T ss_pred             HhcccCCCHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhhc-------ccc--------------
Confidence            99999999999999999999999999999999999999999999999999886321       000              


Q ss_pred             HHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhccccccchHHHHHHHHhccCCC
Q 005763          614 LKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFD  677 (678)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~l~~~l~~~~~~~~~~~~L~~lllrld~n  677 (678)
                                     .+...+++++++++|++++..|+++|++++ +.++.++|++||+|||||
T Consensus       604 ---------------~~~~~~~~~~l~~~F~~~~~~L~~~l~~l~-~~~~~~~l~~Ll~rLd~N  651 (677)
T 3rip_A          604 ---------------DERGAAQLSILVKGFSRQSSLLFKILSSVR-NHQINSDLAQLLLRLDYN  651 (677)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSCCHHHHHHHHHHHHH
T ss_pred             ---------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCchHHHHHHHHhCch
Confidence                           111246899999999999999999999984 466789999999999998

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00