Citrus Sinensis ID: 005766

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------68
MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQPIPSMAAVS
cccccEEccccccccccccccHHHHHHHHHHHHHHHHcccEEcccccEEEcccccccccccccccccccccccEEEEEEccccccccccccccccccEEEEEEccccccHHHHHHHHccccccEEEEEEcccccccccccccccccccccccccccEEEEEEcccHHHHHHHHcccEEEEEEEEccccccccccccccccccccEEEccEEEcccccccccccccccHHHHHHHHHcccccccccccccccccccccccccEEcccccHHHHHHHHHcccccccccccccccccccccccEEEEEccccEEEHHHHHHHHHHHHcccEEEcccccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccHHHHHHHHHHHHccccHHHHHHHEEEEcEEEEccccccccccccccccccccccccEEEEEEccccccccccccEEcccccccccccccHHHHHHHcccccccccccc
cHHHHcccccccccccEEcccHHHHHHHHHHHHHHHHcccEEEEEEEEEEEccccEEccHHHEEEcccccccEEEEEEEcccccccHHHHHHHcccccEEEEEEcccccccccEEEEEccccEEEEEEEccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHcccEEEEEEEccHHHccEEEEcccccccccccccccccccccccccccEccccccHHHHcccccccccccccccccccccccccccccHHHHHHHHccHHHccHHHHccccEEEEEEEEEEcccccEcEEEEEEEEEEcHHHHHHHHHHHHccccEcHHHHHHHccHHHHHHHHHcccccccEEccHHHHHHHHHHHHHHHHHHHHHHHccccccccHcccHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccccccHEEHcccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHHHHcHccccHHHHHHEEEEEEEEEcccccccHHcccccccHHHHccccccEEEEEEcccEEccccccEEcccEEEccEEEEcHHHHHHHcccccccEEEEc
masfkrygvwadwnnpyltldpeyeAAQIEVFGQMSLqgyiyrgkkpvhwspssrTALAEAEleypeghvsRSIYAVFRMvsappstsgllneflpdlglavwtttpwtvpanaAVAVNAKLQYAVVEIQSllegdsaapankksrpgnvlkdqKKVFIIVASDlvptleakwgtKLVIKKTlagsdlencryvhpvdnrqcpvviggdyittesgtglvhtapghgqedyvtslkyglpilspvddegkfteeagkfsgldvlgdgNVAVVKYLDEQMSLImeepyehkypydwrtkkptiFRATEQWFASVEGFRQAAMDAIgqvkwvppqeapgygadVLRLWVSSVdytgdvmigpqVLRQMSDIYRKLRGTLRYLLGNlhdwrvgnsisyddlpmiDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSnfyfdvakdrlytggttsftRRSCQTVLSAHLLSIVRVIAPilphlaedvwqnlpfaytledgsaaefvfeskwpvldekwrtfpvgeiYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQvevlpstpnglirnipysgeylvegkdKVWIgvsraegskcercwnystqvgsfvehptlcsrcyevlavqpipsmaavs
masfkrygvwadwnnPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLlegdsaapankksrpgnvlkdqkkVFIIVASdlvptleakwgtkLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGkfsgldvlgdgNVAVVKYLDEQMSLIMEepyehkypydWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVartgkligssleakvYLFTDDASLASRLREMCTAKHDADTLQRIFIISqvevlpstpnglIRNIPYSGEYLVEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQPIPSMAAVS
MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLavwtttpwtvpanaavavnaKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYqffkifqiiqrfiiVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQPIPSMAAVS
****KRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWS*****ALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLL*******************DQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQP********
MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQPI*******
MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQPIPSMAAVS
*ASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQS***********************KKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGL*RNIPYSGEYLVEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQPIPSMAAVS
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MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQPIPSMAAVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query678 2.2.26 [Sep-21-2011]
B2IZP5 959 Isoleucine--tRNA ligase O yes no 0.461 0.326 0.646 1e-123
Q8YXY3 960 Isoleucine--tRNA ligase O yes no 0.464 0.328 0.646 1e-122
B7KFT1 959 Isoleucine--tRNA ligase O yes no 0.458 0.324 0.625 1e-120
B7K5H5 959 Isoleucine--tRNA ligase O yes no 0.457 0.323 0.630 1e-120
P73505 988 Isoleucine--tRNA ligase O N/A no 0.457 0.313 0.618 1e-116
B0JSP4 952 Isoleucine--tRNA ligase O yes no 0.443 0.316 0.594 1e-114
B1WVA3 959 Isoleucine--tRNA ligase O yes no 0.457 0.323 0.609 1e-114
B8HMX3 955 Isoleucine--tRNA ligase O yes no 0.449 0.319 0.610 1e-113
Q8DGI7 953 Isoleucine--tRNA ligase O yes no 0.457 0.325 0.601 1e-112
Q5N1G1 954 Isoleucine--tRNA ligase O yes no 0.449 0.319 0.584 1e-107
>sp|B2IZP5|SYI_NOSP7 Isoleucine--tRNA ligase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ileS PE=3 SV=1 Back     alignment and function desciption
 Score =  444 bits (1141), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/331 (64%), Positives = 253/331 (76%), Gaps = 18/331 (5%)

Query: 3   SFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAE 62
           +FKRYG+W DW+NPYLTL PEYEAAQI VFGQM L+GYIYRG KPVHWSPSS+TALAEAE
Sbjct: 143 NFKRYGIWGDWDNPYLTLKPEYEAAQIGVFGQMFLKGYIYRGLKPVHWSPSSKTALAEAE 202

Query: 63  LEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKL 122
           LEYPEGHVSRSIYA F + S   +   LL E+  DLG+A+WTTTPWT+P N AVAVNA L
Sbjct: 203 LEYPEGHVSRSIYAAFPVTSLAEAVKPLLAEYQSDLGVAIWTTTPWTIPGNLAVAVNADL 262

Query: 123 QYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKT 182
            YAVVE+       S + A  K +           ++IVA+DLV  L +  G +L +K T
Sbjct: 263 NYAVVEV-------SQSEAQSKFK-----------YLIVAADLVERLSSTLGLELTLKAT 304

Query: 183 LAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPIL 242
             G+DLE+  Y HP+ +R+ P+V+GGDYITTESGTGLVHTAPGHGQEDY+   +YGLPIL
Sbjct: 305 FKGNDLEHTTYRHPLFDRESPIVVGGDYITTESGTGLVHTAPGHGQEDYIVGQRYGLPIL 364

Query: 243 SPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTI 302
           +PVDD G FT+EAG+F+GL+VLGDGN AV+  L    SL+ EEPY HKYPYDWRTKKPTI
Sbjct: 365 APVDDNGNFTQEAGEFAGLNVLGDGNQAVIDALAAAGSLLKEEPYPHKYPYDWRTKKPTI 424

Query: 303 FRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 333
           FRATEQWFASVEGFR+ A+ AI  VKW+P Q
Sbjct: 425 FRATEQWFASVEGFREEALKAIATVKWIPAQ 455
Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile).
Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 5
>sp|Q8YXY3|SYI_NOSS1 Isoleucine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ileS PE=3 SV=1 Back     alignment and function description
>sp|B7KFT1|SYI_CYAP7 Isoleucine--tRNA ligase OS=Cyanothece sp. (strain PCC 7424) GN=ileS PE=3 SV=1 Back     alignment and function description
>sp|B7K5H5|SYI_CYAP8 Isoleucine--tRNA ligase OS=Cyanothece sp. (strain PCC 8801) GN=ileS PE=3 SV=1 Back     alignment and function description
>sp|P73505|SYI_SYNY3 Isoleucine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ileS PE=3 SV=1 Back     alignment and function description
>sp|B0JSP4|SYI_MICAN Isoleucine--tRNA ligase OS=Microcystis aeruginosa (strain NIES-843) GN=ileS PE=3 SV=1 Back     alignment and function description
>sp|B1WVA3|SYI_CYAA5 Isoleucine--tRNA ligase OS=Cyanothece sp. (strain ATCC 51142) GN=ileS PE=3 SV=1 Back     alignment and function description
>sp|B8HMX3|SYI_CYAP4 Isoleucine--tRNA ligase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ileS PE=3 SV=1 Back     alignment and function description
>sp|Q8DGI7|SYI_THEEB Isoleucine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=ileS PE=3 SV=2 Back     alignment and function description
>sp|Q5N1G1|SYI_SYNP6 Isoleucine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ileS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query678
255551751 1102 isoleucyl tRNA synthetase, putative [Ric 0.489 0.301 0.846 1e-171
147804918 1088 hypothetical protein VITISV_015862 [Viti 0.508 0.317 0.817 1e-168
225432320 1105 PREDICTED: isoleucyl-tRNA synthetase-lik 0.508 0.312 0.815 1e-167
297736880 1221 unnamed protein product [Vitis vinifera] 0.508 0.282 0.815 1e-167
224107153 981 predicted protein [Populus trichocarpa] 0.507 0.350 0.802 1e-165
356564073 1093 PREDICTED: isoleucyl-tRNA synthetase-lik 0.492 0.305 0.808 1e-159
334188274 1279 isoleucyl-tRNA synthetase [Arabidopsis t 0.508 0.269 0.752 1e-156
22327660 1093 isoleucyl-tRNA synthetase [Arabidopsis t 0.508 0.315 0.752 1e-156
10177193 988 isoleucyl-tRNA synthetase [Arabidopsis t 0.508 0.349 0.752 1e-155
297795625 1095 hypothetical protein ARALYDRAFT_494966 [ 0.488 0.302 0.792 1e-154
>gi|255551751|ref|XP_002516921.1| isoleucyl tRNA synthetase, putative [Ricinus communis] gi|223544009|gb|EEF45535.1| isoleucyl tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 282/333 (84%), Positives = 311/333 (93%), Gaps = 1/333 (0%)

Query: 1   MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAE 60
           MASFKRYGVWADW+NPYLTLDP+YEAAQIEVFGQM+LQGYIYRG+KPVHWSPSS TALAE
Sbjct: 247 MASFKRYGVWADWDNPYLTLDPDYEAAQIEVFGQMALQGYIYRGRKPVHWSPSSHTALAE 306

Query: 61  AELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNA 120
           AELEYPEGHVS+SIYA+FR+ SAPP++  LL EF PDL LA+WTTTPWTVPANAAVAVN+
Sbjct: 307 AELEYPEGHVSKSIYAIFRVASAPPTSRLLLEEFFPDLFLAIWTTTPWTVPANAAVAVNS 366

Query: 121 KLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIK 180
           KLQYAVVE+QSL E  S +P NKK R GNVL++QKK+F+IVASDL+PTLEAKW  KLVIK
Sbjct: 367 KLQYAVVEVQSL-EDASTSPGNKKRRFGNVLREQKKLFLIVASDLMPTLEAKWSVKLVIK 425

Query: 181 KTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLP 240
           KTL+GSDLENCRY+HP+DNR+CPVVIGGDYITTESGTGLVHTAPGHGQEDY+T +KYGLP
Sbjct: 426 KTLSGSDLENCRYIHPIDNRECPVVIGGDYITTESGTGLVHTAPGHGQEDYITGMKYGLP 485

Query: 241 ILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKP 300
           +LSPVDD GKFTEEA  FSGLDVLG+GNVAVVKYLDEQMS++MEE YEHKYPYDWRTKKP
Sbjct: 486 VLSPVDDGGKFTEEAAPFSGLDVLGEGNVAVVKYLDEQMSIVMEESYEHKYPYDWRTKKP 545

Query: 301 TIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 333
           TIFRATEQWFASVEGFRQAAMDAIG VKW+PPQ
Sbjct: 546 TIFRATEQWFASVEGFRQAAMDAIGHVKWIPPQ 578

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147804918|emb|CAN78050.1| hypothetical protein VITISV_015862 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225432320|ref|XP_002276207.1| PREDICTED: isoleucyl-tRNA synthetase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297736880|emb|CBI26081.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224107153|ref|XP_002314391.1| predicted protein [Populus trichocarpa] gi|222863431|gb|EEF00562.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356564073|ref|XP_003550281.1| PREDICTED: isoleucyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|334188274|ref|NP_001190497.1| isoleucyl-tRNA synthetase [Arabidopsis thaliana] gi|332008381|gb|AED95764.1| isoleucyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22327660|ref|NP_199714.2| isoleucyl-tRNA synthetase [Arabidopsis thaliana] gi|19424030|gb|AAL87306.1| putative isoleucyl-tRNA synthetase [Arabidopsis thaliana] gi|23296804|gb|AAN13174.1| putative isoleucyl-tRNA synthetase [Arabidopsis thaliana] gi|332008379|gb|AED95762.1| isoleucyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|10177193|dbj|BAB10327.1| isoleucyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297795625|ref|XP_002865697.1| hypothetical protein ARALYDRAFT_494966 [Arabidopsis lyrata subsp. lyrata] gi|297311532|gb|EFH41956.1| hypothetical protein ARALYDRAFT_494966 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query678
TAIR|locus:2154349 1093 OVA2 "ovule abortion 2" [Arabi 0.488 0.302 0.738 6e-273
TIGR_CMR|BA_4034921 BA_4034 "isoleucyl-tRNA synthe 0.398 0.293 0.342 4.4e-99
UNIPROTKB|Q9KU47949 ileS "Isoleucine--tRNA ligase" 0.485 0.346 0.338 8.2e-97
TIGR_CMR|VC_0682949 VC_0682 "isoleucyl-tRNA synthe 0.485 0.346 0.338 8.2e-97
TIGR_CMR|CHY_0534 925 CHY_0534 "isoleucyl-tRNA synth 0.262 0.192 0.464 6e-94
UNIPROTKB|F6SBX2940 IARS2 "Isoleucine--tRNA ligase 0.469 0.338 0.351 1.1e-88
UNIPROTKB|Q9NSE41012 IARS2 "Isoleucine--tRNA ligase 0.469 0.314 0.351 2.1e-88
UNIPROTKB|G3MWG4922 IARS2 "Uncharacterized protein 0.454 0.334 0.337 4.8e-88
POMBASE|SPCC18B5.08c973 SPCC18B5.08c "mitochondrial is 0.455 0.317 0.348 3.4e-86
UNIPROTKB|F1Q1M2940 IARS2 "Uncharacterized protein 0.467 0.337 0.340 1.1e-85
TAIR|locus:2154349 OVA2 "ovule abortion 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1328 (472.5 bits), Expect = 6.0e-273, Sum P(2) = 6.0e-273
 Identities = 246/333 (73%), Positives = 274/333 (82%)

Query:     1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAE 60
             M SFKR+GVWADWNNPYLTLDPEYEAAQIEVFGQM+L+GYIYRG+KPVHWSPSSRTALAE
Sbjct:   236 MESFKRFGVWADWNNPYLTLDPEYEAAQIEVFGQMALKGYIYRGRKPVHWSPSSRTALAE 295

Query:    61 AELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLXXXXXXXXXXXXXXXXXXXX 120
             AELEYPEGH+S+SIYA+F++V     TS LL+EF+P++ L                    
Sbjct:   296 AELEYPEGHISKSIYAIFKLVGGA-KTS-LLDEFIPNIYLAVWTTTPWTMPANAAVAVNA 353

Query:   121 KLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIK 180
             KLQY+VVE+QS  E +S   +NKK  PG VLK+Q+K+F+IVA+DLVP LEAKWG KL I 
Sbjct:   354 KLQYSVVEVQSFSEDESTVTSNKKKIPGKVLKNQQKLFVIVATDLVPALEAKWGVKLSIS 413

Query:   181 KTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLP 240
             KT  GSDLENCRY HP+DNR CPVVIGGDYITTESGTGLVHTAPGHGQEDY T LKYGLP
Sbjct:   414 KTFLGSDLENCRYTHPIDNRDCPVVIGGDYITTESGTGLVHTAPGHGQEDYATGLKYGLP 473

Query:   241 ILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKP 300
             ++SPVDDEGKFTEEAG+F GL VLG+GN AVV YLDE MSL+MEE Y HKYPYDWRTKKP
Sbjct:   474 LVSPVDDEGKFTEEAGQFRGLSVLGEGNTAVVSYLDENMSLVMEESYAHKYPYDWRTKKP 533

Query:   301 TIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 333
             TIFRATEQWFASVEGFR A MDAI  VKWVP Q
Sbjct:   534 TIFRATEQWFASVEGFRTATMDAINNVKWVPHQ 566
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA;ISS
GO:0004822 "isoleucine-tRNA ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA;ISS
GO:0006428 "isoleucyl-tRNA aminoacylation" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0048481 "ovule development" evidence=RCA;IMP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA
GO:0016226 "iron-sulfur cluster assembly" evidence=RCA
TIGR_CMR|BA_4034 BA_4034 "isoleucyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KU47 ileS "Isoleucine--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0682 VC_0682 "isoleucyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0534 CHY_0534 "isoleucyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|F6SBX2 IARS2 "Isoleucine--tRNA ligase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NSE4 IARS2 "Isoleucine--tRNA ligase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3MWG4 IARS2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
POMBASE|SPCC18B5.08c SPCC18B5.08c "mitochondrial isoleucine-tRNA ligase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q1M2 IARS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.50.824
3rd Layer6.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query678
PLN02843 974 PLN02843, PLN02843, isoleucyl-tRNA synthetase 0.0
PLN02843974 PLN02843, PLN02843, isoleucyl-tRNA synthetase 0.0
PRK05743 912 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewe 1e-149
PRK05743912 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewe 1e-127
COG0060 933 COG0060, IleS, Isoleucyl-tRNA synthetase [Translat 1e-124
TIGR00392861 TIGR00392, ileS, isoleucyl-tRNA synthetase 1e-114
PRK13804 961 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisi 1e-101
pfam00133606 pfam00133, tRNA-synt_1, tRNA synthetases class I ( 2e-94
COG0060933 COG0060, IleS, Isoleucyl-tRNA synthetase [Translat 6e-91
PRK06039 975 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewe 3e-81
PRK13804961 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisi 1e-78
cd07960180 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding d 3e-75
TIGR00392861 TIGR00392, ileS, isoleucyl-tRNA synthetase 3e-50
PLN02882 1159 PLN02882, PLN02882, aminoacyl-tRNA ligase 2e-39
pfam08264148 pfam08264, Anticodon_1, Anticodon-binding domain o 9e-34
PTZ00427 1205 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putati 1e-25
TIGR00422 861 TIGR00422, valS, valyl-tRNA synthetase 4e-22
COG0525 877 COG0525, ValS, Valyl-tRNA synthetase [Translation, 1e-20
COG0525877 COG0525, ValS, Valyl-tRNA synthetase [Translation, 6e-20
PRK05729 874 PRK05729, valS, valyl-tRNA synthetase; Reviewed 4e-19
cd00818338 cd00818, IleRS_core, catalytic core domain of isol 6e-19
TIGR00422861 TIGR00422, valS, valyl-tRNA synthetase 4e-18
PRK05729874 PRK05729, valS, valyl-tRNA synthetase; Reviewed 1e-15
PRK14900 1052 PRK14900, valS, valyl-tRNA synthetase; Provisional 2e-15
COG0525877 COG0525, ValS, Valyl-tRNA synthetase [Translation, 4e-15
cd07962135 cd07962, Anticodon_Ia_Val, Anticodon-binding domai 1e-14
TIGR00422861 TIGR00422, valS, valyl-tRNA synthetase 2e-14
cd07961183 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding 2e-14
PRK13208800 PRK13208, valS, valyl-tRNA synthetase; Reviewed 6e-14
PRK06039975 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewe 5e-13
cd00817382 cd00817, ValRS_core, catalytic core domain of valy 6e-11
PTZ00419 995 PTZ00419, PTZ00419, valyl-tRNA synthetase-like pro 7e-11
PRK14900 1052 PRK14900, valS, valyl-tRNA synthetase; Provisional 1e-10
PRK13208800 PRK13208, valS, valyl-tRNA synthetase; Reviewed 1e-10
PLN02943 958 PLN02943, PLN02943, aminoacyl-tRNA ligase 3e-10
PTZ00419995 PTZ00419, PTZ00419, valyl-tRNA synthetase-like pro 4e-10
PRK13208800 PRK13208, valS, valyl-tRNA synthetase; Reviewed 7e-10
pfam0682730 pfam06827, zf-FPG_IleRS, Zinc finger found in FPG 9e-10
cd00668312 cd00668, Ile_Leu_Val_MetRS_core, catalytic core do 1e-09
PLN02943958 PLN02943, PLN02943, aminoacyl-tRNA ligase 2e-09
PRK05729874 PRK05729, valS, valyl-tRNA synthetase; Reviewed 4e-09
cd00818338 cd00818, IleRS_core, catalytic core domain of isol 6e-09
pfam13603178 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, 8e-09
PRK00390805 PRK00390, leuS, leucyl-tRNA synthetase; Validated 7e-08
PTZ00419 995 PTZ00419, PTZ00419, valyl-tRNA synthetase-like pro 1e-07
PRK12300897 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed 3e-07
PLN02943 958 PLN02943, PLN02943, aminoacyl-tRNA ligase 7e-07
COG0495814 COG0495, LeuS, Leucyl-tRNA synthetase [Translation 8e-07
cd07375117 cd07375, Anticodon_Ia_like, Anticodon-binding doma 2e-06
PLN02563963 PLN02563, PLN02563, aminoacyl-tRNA ligase 4e-06
TIGR00395938 TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch 7e-06
cd07957129 cd07957, Anticodon_Ia_Met, Anticodon-binding domai 8e-06
PRK00390805 PRK00390, leuS, leucyl-tRNA synthetase; Validated 5e-05
PLN02381 1066 PLN02381, PLN02381, valyl-tRNA synthetase 6e-05
TIGR00396842 TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba 6e-05
COG0495814 COG0495, LeuS, Leucyl-tRNA synthetase [Translation 7e-05
PLN02381 1066 PLN02381, PLN02381, valyl-tRNA synthetase 4e-04
COG0495814 COG0495, LeuS, Leucyl-tRNA synthetase [Translation 7e-04
PLN02882 1159 PLN02882, PLN02882, aminoacyl-tRNA ligase 8e-04
cd07959117 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding d 0.002
COG0143558 COG0143, MetG, Methionyl-tRNA synthetase [Translat 0.003
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase Back     alignment and domain information 
 Score =  679 bits (1754), Expect = 0.0
 Identities = 259/333 (77%), Positives = 288/333 (86%)

Query: 1   MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAE 60
             SFKRYGVW DW NPYLTLDPEYEAAQIEVFGQM L GYIYRG+KPVHWSPSSRTALAE
Sbjct: 122 RESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAE 181

Query: 61  AELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNA 120
           AELEYPEGHVS+SIY  F +VS   ++   L EFLP L LA+WTTTPWT+PANAAVAVN 
Sbjct: 182 AELEYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVND 241

Query: 121 KLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIK 180
           KLQY+VVE+QS  E +S +  NKK RPGNVLK+Q+K+F+IVA+DLVP LEAKWG KLV+ 
Sbjct: 242 KLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVL 301

Query: 181 KTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLP 240
           KT  GSDLE CRY+HP+ NR+ PVVIGGDYITTESGTGLVHTAPGHGQEDY+T LKYGLP
Sbjct: 302 KTFPGSDLEGCRYIHPLYNRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGLP 361

Query: 241 ILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKP 300
           +LSPVDD GKFTEEAG+FSGL VLG+GN AVV+ LDE  SL+MEE Y HKYPYDWRTKKP
Sbjct: 362 LLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKP 421

Query: 301 TIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 333
           TIFRATEQWFASVEGFRQAA+DAI +VKW+P Q
Sbjct: 422 TIFRATEQWFASVEGFRQAALDAIDKVKWIPAQ 454

Length = 974
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) Back     alignment and domain information
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA Back     alignment and domain information
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|203527 pfam06827, zf-FPG_IleRS, Zinc finger found in FPG and IleRS Back     alignment and domain information
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2 Back     alignment and domain information
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains Back     alignment and domain information
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 678
COG0060933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 100.0
PLN02843974 isoleucyl-tRNA synthetase 100.0
KOG0433937 consensus Isoleucyl-tRNA synthetase [Translation, 100.0
PRK13804961 ileS isoleucyl-tRNA synthetase; Provisional 100.0
PRK05743912 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
PLN02882 1159 aminoacyl-tRNA ligase 100.0
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 100.0
PRK06039975 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
COG0525877 ValS Valyl-tRNA synthetase [Translation, ribosomal 100.0
TIGR00392861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 100.0
PRK05729874 valS valyl-tRNA synthetase; Reviewed 100.0
PTZ00419995 valyl-tRNA synthetase-like protein; Provisional 100.0
PLN023811066 valyl-tRNA synthetase 100.0
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 100.0
PLN02943958 aminoacyl-tRNA ligase 100.0
TIGR00422861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 100.0
PRK13208800 valS valyl-tRNA synthetase; Reviewed 100.0
PRK12300897 leuS leucyl-tRNA synthetase; Reviewed 100.0
PLN029591084 aminoacyl-tRNA ligase 100.0
TIGR00395938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 100.0
KOG0432995 consensus Valyl-tRNA synthetase [Translation, ribo 100.0
KOG0434 1070 consensus Isoleucyl-tRNA synthetase [Translation, 100.0
PRK00390805 leuS leucyl-tRNA synthetase; Validated 100.0
PF00133601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 100.0
TIGR00396842 leuS_bact leucyl-tRNA synthetase, eubacterial and 100.0
PLN02563963 aminoacyl-tRNA ligase 100.0
COG0495814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 100.0
KOG0435876 consensus Leucyl-tRNA synthetase [Translation, rib 100.0
KOG04371080 consensus Leucyl-tRNA synthetase [Translation, rib 100.0
PLN02224616 methionine-tRNA ligase 100.0
PRK12268556 methionyl-tRNA synthetase; Reviewed 100.0
PLN02610801 probable methionyl-tRNA synthetase 100.0
PRK12267648 methionyl-tRNA synthetase; Reviewed 100.0
TIGR00398530 metG methionyl-tRNA synthetase. The methionyl-tRNA 100.0
COG0143558 MetG Methionyl-tRNA synthetase [Translation, ribos 100.0
PRK00133673 metG methionyl-tRNA synthetase; Reviewed 100.0
PRK11893511 methionyl-tRNA synthetase; Reviewed 99.97
KOG0436578 consensus Methionyl-tRNA synthetase [Translation, 99.96
cd07960180 Anticodon_Ia_Ile_BEm Anticodon-binding domain of b 99.95
cd07961183 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of 99.95
PF08264153 Anticodon_1: Anticodon-binding domain of tRNA; Int 99.9
PF13603185 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; P 99.89
cd07962135 Anticodon_Ia_Val Anticodon-binding domain of valyl 99.77
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 99.74
cd07959117 Anticodon_Ia_Leu_AEc Anticodon-binding domain of a 99.69
cd07957129 Anticodon_Ia_Met Anticodon-binding domain of methi 99.67
cd07958117 Anticodon_Ia_Leu_BEm Anticodon-binding domain of b 99.6
KOG1247567 consensus Methionyl-tRNA synthetase [Translation, 99.57
PF09334391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 99.56
cd07375117 Anticodon_Ia_like Anticodon-binding domain of clas 99.35
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 99.35
PRK00260463 cysS cysteinyl-tRNA synthetase; Validated 99.31
PTZ00399651 cysteinyl-tRNA-synthetase; Provisional 99.23
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 99.22
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 98.42
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 98.39
TIGR00435465 cysS cysteinyl-tRNA synthetase. This model finds t 98.29
PF0682730 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; 98.16
PLN02946557 cysteine-tRNA ligase 98.14
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 98.11
PRK14536490 cysS cysteinyl-tRNA synthetase; Provisional 98.11
PRK14535699 cysS cysteinyl-tRNA synthetase; Provisional 98.1
TIGR00456566 argS arginyl-tRNA synthetase. This model recognize 97.99
PRK14534481 cysS cysteinyl-tRNA synthetase; Provisional 97.66
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 97.03
PRK11893511 methionyl-tRNA synthetase; Reviewed 97.01
TIGR03447411 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- 96.73
PRK12418384 cysteinyl-tRNA synthetase; Provisional 96.43
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 96.25
COG0215464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 96.25
KOG2007586 consensus Cysteinyl-tRNA synthetase [Translation, 96.23
PRK12267 648 methionyl-tRNA synthetase; Reviewed 96.15
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 95.93
PRK12451562 arginyl-tRNA synthetase; Reviewed 95.43
cd07956156 Anticodon_Ia_Arg Anticodon-binding domain of argin 95.07
COG0495814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 94.89
KOG1247567 consensus Methionyl-tRNA synthetase [Translation, 94.0
PLN02563 963 aminoacyl-tRNA ligase 91.75
COG0143558 MetG Methionyl-tRNA synthetase [Translation, ribos 90.63
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 90.59
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 89.92
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 89.66
PRK12418384 cysteinyl-tRNA synthetase; Provisional 89.58
COG0018577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 89.39
PLN02610 801 probable methionyl-tRNA synthetase 89.2
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 89.0
TIGR03447411 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- 88.46
PLN02286576 arginine-tRNA ligase 87.57
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 84.0
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 82.56
PLN02224616 methionine-tRNA ligase 80.38
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-134  Score=1147.06  Aligned_cols=611  Identities=44%  Similarity=0.764  Sum_probs=554.2

Q ss_pred             ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005766            1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM   80 (678)
Q Consensus         1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l   80 (678)
                      |++|+|||+++||+++|.|||++|++.++|+|.+|++|||||||.|||+|||+|+|||||+||||.+ +.++|+||+|++
T Consensus       141 ~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d-~~dpSIyV~F~v  219 (933)
T COG0060         141 KEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGD-VKDPSIYVKFPV  219 (933)
T ss_pred             HHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccc-cCCceEEEEEEe
Confidence            5799999999999999999999999999999999999999999999999999999999999999977 999999999999


Q ss_pred             eeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEE
Q 005766           81 VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFII  160 (678)
Q Consensus        81 ~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  160 (678)
                      .+..         ...+.+++||||||||||||+||||||+.+|++|+.+                         ++.||
T Consensus       220 ~~~~---------~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~-------------------------~~~~I  265 (933)
T COG0060         220 KDEG---------LDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVN-------------------------GEKLI  265 (933)
T ss_pred             ccCC---------CCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEEC-------------------------CEEEE
Confidence            8641         1246999999999999999999999999999999986                         58999


Q ss_pred             EeccchHHHHHHhCCc-eEEEEeeecCcccCCEeeCCCCC----CcccEEEccCccccCCCCCceeccCCCCHHHHHHHH
Q 005766          161 VASDLVPTLEAKWGTK-LVIKKTLAGSDLENCRYVHPVDN----RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSL  235 (678)
Q Consensus       161 ia~~~~~~l~~~~~~~-~~i~~~~~G~~l~g~~~~~P~~~----~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~  235 (678)
                      +|+++++++.+..+.+ ++++++++|++|+|+.|.|||..    +..|| +.|||||.+.|||+||+|||||++||.+|+
T Consensus       266 lA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v-~~gd~VT~d~GTG~VHtAPghGeeDy~vg~  344 (933)
T COG0060         266 LAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPV-ILGDHVTLDDGTGLVHTAPGHGEEDYEVGK  344 (933)
T ss_pred             EhHHHHHHHHHHcCCcceEEeEEeehhhhCCCEeeCCcccccccceeeE-EecCeEecCCCccceecCCCCCHHHHHHHH
Confidence            9999999999998876 89999999999999999999995    77888 779999999999999999999999999999


Q ss_pred             HcC-CCcccccCCCCccccccCccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccch
Q 005766          236 KYG-LPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVE  314 (678)
Q Consensus       236 ~~~-l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~  314 (678)
                      ++| +|+++|||++|+|+++++.|.|+.+. +||+.|++.|+++|.|++.+.|+||||||||||+|+|||+|+|||++|+
T Consensus       345 ~~g~l~v~~pVD~~G~yt~~~~~~~G~~v~-dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~  423 (933)
T COG0060         345 KYGLLEVLNPVDDNGRYTEEAPKYEGLFVK-DANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVD  423 (933)
T ss_pred             HcCCcCCccccCCCccccccchhhCCceec-cCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHH
Confidence            999 79999999999999999999999995 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCcccCCC-------------------------------------------------------------
Q 005766          315 GFRQAAMDAIGQVKWVPPQ-------------------------------------------------------------  333 (678)
Q Consensus       315 ~~~~~~~~~i~~v~~~P~~-------------------------------------------------------------  333 (678)
                      ++|+++++.+++++|+|++                                                             
T Consensus       424 ~~r~~~l~~i~~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w  503 (933)
T COG0060         424 KLRDKMLKEINKVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDW  503 (933)
T ss_pred             HHHHHHHHHHhcceEEChhHHHHHHHHHcCCCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhh
Confidence            9999999999999999998                                                             


Q ss_pred             --------------------------------------------------------------------------------
Q 005766          334 --------------------------------------------------------------------------------  333 (678)
Q Consensus       334 --------------------------------------------------------------------------------  333 (678)
                                                                                                      
T Consensus       504 ~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~~~~~~~~~~~~aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~  583 (933)
T COG0060         504 HRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPRENLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGR  583 (933)
T ss_pred             hccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccCCcccccCccccCcEEEEeccccchhHHHHHHHHHHHcCC
Confidence                                                                                            


Q ss_pred             --------------------------------CCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHH
Q 005766          334 --------------------------------EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLL  381 (678)
Q Consensus       334 --------------------------------~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l  381 (678)
                                                      ++++||||+||||++++++++|+.||+++++++.+.+++|||++||++
T Consensus       584 aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd~~~dl~~s~~il~~~~~~~r~irNt~rF~l  663 (933)
T COG0060         584 APYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLL  663 (933)
T ss_pred             chHHHHhhcccEECCCCCCccccCCCcCCHHHHHHhhCchheeeeeeecCchhccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence                                            446999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCCC-ccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChH
Q 005766          382 GNLHDWRVGN-SISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSF  460 (678)
Q Consensus       382 ~nl~~~~~~~-~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~  460 (678)
                      +|+++|+|.. .++..++..+||||++++++++++++++|++|+|+++++.+++|+..+||||||+++|+|+|+++.+++
T Consensus       664 ~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~  743 (933)
T COG0060         664 GNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSP  743 (933)
T ss_pred             HhccCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCCH
Confidence            9999999973 355667889999999999999999999999999999999999999889999999999999999988999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHH
Q 005766          461 TRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELR  540 (678)
Q Consensus       461 ~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr  540 (678)
                      +|+++|++|+++|..++++||||+||+|||||++|+..      ...+|||+.+||+.+..+.+........+..++++|
T Consensus       744 ~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~------~~~eSVhl~~~p~~~~~~~~~~~~~~~r~~~~~k~R  817 (933)
T COG0060         744 DRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGE------RKEESVHLEDWPEVDEELIDVEAALAARWEALLKLR  817 (933)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccC------CCCceeEeccCCcccccccchhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999754      114799999999988776643456778899999999


Q ss_pred             HHHHHHHHHHhccccCCCCceeEEEEEeCChhHHHHHHHhhccCCChhhhhhheeeeceEEccCCCCCCccCCCCCCccc
Q 005766          541 TEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYL  620 (678)
Q Consensus       541 ~~v~~~ie~~r~~~~i~~~~~~~v~I~~~~~~~~~~l~~~~~~~~~~~~L~~l~~vs~v~~~~~~~~~~~~~~~~~~~~~  620 (678)
                      ..++++++.+|.++.|+++++++++++.++   ...+..+      ..+|..+|++|.+.+..........  .......
T Consensus       818 ~~v~~~l~~~r~~~~I~~~lnak~~~~~~~---~~~~~~~------~~~l~~~~~~s~~~v~~~~~~~~~~--~~~~~~~  886 (933)
T COG0060         818 DPVNKALEAARLEKVIGSSLNAKVVIYTED---SELLYKL------KPNLGKVLITSAVEVAKALEALAGA--EAEELVD  886 (933)
T ss_pred             HHHHHHHHHHHhhhHhhhcceeEEEEeecc---hhhhhhh------chhHHHHHhhhHHHHHhhhccccch--hhhhhhc
Confidence            999999999999999999999999999865   2233333      2569999999988776532111000  0000000


Q ss_pred             ccCCceEEEEEEeCCCCCCCCCcccccCCCCCCCCCCCChhhHHHhcc
Q 005766          621 VEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAV  668 (678)
Q Consensus       621 ~~~~~~~~v~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~RC~~v~~~  668 (678)
                      +   ..+.+.+.++++.||+|||+|..+++++..++++|.||.++|+.
T Consensus       887 ~---~~~~~~~~~~eg~~c~r~~~~~~~~~~~~~~e~l~~~~v~~iq~  931 (933)
T COG0060         887 G---DGVELTVEKAEGEKCPRCWHYDTELGEELEEEGLCRRCVRRIQE  931 (933)
T ss_pred             c---cceeEEEEeccCCcCCeEEEEcCcCCcccccchHHHHHHHHHhh
Confidence            0   01688899999999999999999999999999999999999875

>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases Back     alignment and domain information
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases Back     alignment and domain information
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A Back     alignment and domain information
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases Back     alignment and domain information
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases Back     alignment and domain information
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases Back     alignment and domain information
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase Back     alignment and domain information
>PLN02286 arginine-tRNA ligase Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query678
1qu2_A917 Insights Into Editing From An Ile-Trna Synthetase S 1e-53
1jzq_A821 Isoleucyl-Trna Synthetase Complexed With Isoleucyl- 3e-23
1jzq_A821 Isoleucyl-Trna Synthetase Complexed With Isoleucyl- 3e-09
1wk8_A194 Isoleucyl-Trna Synthetase Editing Domain Complexed 5e-14
1wny_A186 Isoleucyl-Trna Synthetase Editing Domain Length = 1 2e-12
1ue0_A182 Isoleucyl-Trna Synthetase Editing Domain Complexed 3e-11
1udz_A182 Isoleucyl-Trna Synthetase Editing Domain Length = 1 3e-11
1wz2_A967 The Crystal Structure Of Leucyl-Trna Synthetase And 2e-05
2ajg_A196 Crystal Structure Of The Editing Domain Of E. Coli 3e-05
4aq7_A880 Ternary Complex Of E. Coli Leucyl-Trna Synthetase, 1e-04
1wkb_A810 Crystal Structure Of Leucyl-Trna Synthetase From Th 6e-04
3o0a_A219 Crystal Structure Of The Wild Type Cp1 Hydrolitic D 7e-04
3pz0_A221 The Crystal Structure Of Aaleurs-Cp1 Length = 221 8e-04
3pz5_A201 The Crystal Structure Of Aaleurs-Cp1-D20 Length = 2 9e-04
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase Structure With Trna(Ile) And Mupirocin Length = 917 Back     alignment and structure 
Iteration: 1

 Score =  207 bits (527), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 133/341 (39%), Positives = 185/341 (54%), Gaps = 36/341 (10%)
Query: 330 VPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRV 389
           VP Q     GAD+ RLWVSS DY  DV I  ++L+Q SD YRK+R TLR++LGN++D+  
Sbjct: 605 VPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNP 664
Query: 390 G-NSISYDDLPMIDQYALFQLENIVKNIRESYESYXXXXXXXXXXXXXXVDLSNFYFDVA 448
             +SI   +L  +D+Y L +L     +   +YE++              V+LSNFY D  
Sbjct: 665 DTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYG 724
Query: 449 KDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAE 508
           KD LY     S  RRS QTVL   L+ + +++APIL H AE+VW + P     E    A+
Sbjct: 725 KDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVKE-ESVHLAD 783
Query: 509 F--VFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYL 566
              V E    +LD KWRTF           + LR +VN+ LE AR  K+IG SLEAKV +
Sbjct: 784 MPKVVEVDQALLD-KWRTF-----------MNLRDDVNRALETARNEKVIGKSLEAKVTI 831
Query: 567 FTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYS-GEYLVEGKD 625
            ++D   AS   E  T+    D L ++FI+SQV+V+    +   +   Y  G+ ++E   
Sbjct: 832 ASNDKFNAS---EFLTS---FDALHQLFIVSQVKVVDKLDD---QATAYEHGDIVIE--- 879
Query: 626 KVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVL 666
                   A+G KCERCWNYS  +G+  E   LC RC +V+
Sbjct: 880 -------HADGEKCERCWNYSEDLGAVDELTHLCPRCQQVV 913
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl- Adenylate Analogue Length = 821 Back     alignment and structure
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl- Adenylate Analogue Length = 821 Back     alignment and structure
>pdb|1WK8|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With The Pre-Transfer Editing Substrate Analogue, Val-Ams Length = 194 Back     alignment and structure
>pdb|1WNY|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Length = 186 Back     alignment and structure
>pdb|1UE0|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With L- Valine Length = 182 Back     alignment and structure
>pdb|1UDZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Length = 182 Back     alignment and structure
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex Length = 967 Back     alignment and structure
>pdb|2AJG|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl- Trna Synthetase Length = 196 Back     alignment and structure
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu) And Leucyl-Adenylate Analogue In The Aminoacylation Conformation Length = 880 Back     alignment and structure
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The Archaeon Pyrococcus Horikoshii Reveals A Novel Editing Domain Orientation Length = 810 Back     alignment and structure
>pdb|3O0A|A Chain A, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain From Aquifex Aeolicus Leucyl-Trna Length = 219 Back     alignment and structure
>pdb|3PZ0|A Chain A, The Crystal Structure Of Aaleurs-Cp1 Length = 221 Back     alignment and structure
>pdb|3PZ5|A Chain A, The Crystal Structure Of Aaleurs-Cp1-D20 Length = 201 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query678
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 1e-151
1ffy_A917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 1e-130
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 1e-108
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 5e-42
1wny_A186 Isoleucyl-tRNA synthetase; ligase, structural geno 2e-58
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 1e-50
1wz2_A967 Leucyl-tRNA synthetase; ligase, riken structural g 1e-23
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 1e-43
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 3e-17
2wfd_A252 Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRN 1e-37
3pz6_A311 Leurs, leucyl-tRNA synthetase; editing domain, gll 4e-33
2wfg_A261 Cytosolic leucyl-tRNA synthetase; ligase, editing 1e-28
1gax_A 862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 1e-18
1gax_A862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 4e-13
1gax_A862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 2e-10
1wka_A147 Valyl-tRNA synthetase; editing, CP1, fidelity, the 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
2ajg_A196 Leucyl-tRNA synthetase; editing domain, ligase; 2. 2e-07
3o0a_A219 Leucyl-tRNA synthetase subunit alpha; CP1 hydrolyt 6e-07
4arc_A880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 9e-07
4arc_A880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 1e-04
2v0c_A878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 3e-06
2v0c_A878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 2e-04
1rqg_A722 Methionyl-tRNA synthetase; translation, dimerizati 5e-04
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 9e-04
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Length = 917 Back     alignment and structure
 Score =  461 bits (1189), Expect = e-151
 Identities = 136/336 (40%), Positives = 190/336 (56%), Gaps = 38/336 (11%)

Query: 1   MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAE 60
              F+R GV  D+N+PY+TL PEYEAAQI +FG+M+ +G IY+GKKPV+WSPSS ++LAE
Sbjct: 136 KKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAE 195

Query: 61  AELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNA 120
           AE+EY +   S SIY  F +                D    +WTTTPWT+P+N A+ V+ 
Sbjct: 196 AEIEYHD-KRSASIYVAFNVKDDK-------GVVDADAKFIIWTTTPWTIPSNVAITVHP 247

Query: 121 KLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWG---TKL 177
           +L+Y    +     G+                       I+A  L   +          +
Sbjct: 248 ELKYGQYNV----NGE---------------------KYIIAEALSDAVAEALDWDKASI 282

Query: 178 VIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKY 237
            ++K   G +LE     HP  +R+   VI GD++TT++GTG VHTAPGHG++DY+   +Y
Sbjct: 283 KLEKEYTGKELEWVVAQHPFLDRESL-VINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQY 341

Query: 238 GLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRT 297
            LP++SP+DD+G FTEE G+F G+      N AV   L E+ +L+  +   H YP+DWRT
Sbjct: 342 ELPVISPIDDKGVFTEEGGQFEGMFYD-KANKAVTDLLTEKGALLKLDFITHSYPHDWRT 400

Query: 298 KKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 333
           KKP IFRAT QWFAS+   RQ  +DAI    +    
Sbjct: 401 KKPVIFRATPQWFASISKVRQDILDAIENTNFKVNW 436
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Length = 917 Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 Back     alignment and structure
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A Length = 186 Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 Back     alignment and structure
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} Length = 252 Back     alignment and structure
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} Length = 311 Back     alignment and structure
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* Length = 261 Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 Back     alignment and structure
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A* Length = 147 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A Length = 196 Back     alignment and structure
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A Length = 219 Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query678
1ffy_A917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 100.0
1gax_A862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 100.0
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 100.0
1wz2_A967 Leucyl-tRNA synthetase; ligase, riken structural g 100.0
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 100.0
2v0c_A878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 100.0
4arc_A880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 100.0
1wny_A186 Isoleucyl-tRNA synthetase; ligase, structural geno 100.0
3u1f_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 100.0
1rqg_A722 Methionyl-tRNA synthetase; translation, dimerizati 100.0
3o0a_A219 Leucyl-tRNA synthetase subunit alpha; CP1 hydrolyt 100.0
2wfg_A261 Cytosolic leucyl-tRNA synthetase; ligase, editing 100.0
1wka_A147 Valyl-tRNA synthetase; editing, CP1, fidelity, the 100.0
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 100.0
2ajg_A196 Leucyl-tRNA synthetase; editing domain, ligase; 2. 100.0
2wfd_A252 Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRN 100.0
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 100.0
3pz6_A311 Leurs, leucyl-tRNA synthetase; editing domain, gll 100.0
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 99.97
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 99.97
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 99.97
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 99.96
3sp1_A501 Cysteinyl-tRNA synthetase; structural genomics, se 99.0
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 98.96
1li5_A461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 98.9
3tqo_A462 Cysteinyl-tRNA synthetase; protein synthesis, liga 98.83
1iq0_A592 Arginyl-tRNA synthetase; riken structural genomics 98.56
2zue_A629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 98.34
3fnr_A464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 98.14
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 96.05
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 94.67
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 94.13
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 93.96
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 90.31
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 88.47
1irx_A523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 87.79
1f7u_A607 Arginyl-tRNA synthetase; RNA-protein complex, amin 84.97
2v0c_A 878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 82.8
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
Probab=100.00  E-value=7.3e-121  Score=1078.62  Aligned_cols=602  Identities=43%  Similarity=0.747  Sum_probs=535.0

Q ss_pred             ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005766            1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM   80 (678)
Q Consensus         1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l   80 (678)
                      |+||+|||+++||+|+|+||||.|+++++|+|.+|+++|+||||.+||+|||+|+|+|||+||+|++ +.++++||+|++
T Consensus       136 ~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d-~~~~~~~v~f~~  214 (917)
T 1ffy_A          136 KKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHD-KRSASIYVAFNV  214 (917)
T ss_dssp             HHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEE-EEEEEEECCBCC
T ss_pred             HHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhccc-ccCceEEEEEEe
Confidence            4799999999999999999999999999999999999999999999999999999999999999966 889999999998


Q ss_pred             eeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEE
Q 005766           81 VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFII  160 (678)
Q Consensus        81 ~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  160 (678)
                      .+..    +.++   ++.+++||||||||||||+||||||+++|++++.+                         ++.++
T Consensus       215 ~~~~----g~~~---~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~-------------------------~~~~i  262 (917)
T 1ffy_A          215 KDDK----GVVD---ADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVN-------------------------GEKYI  262 (917)
T ss_dssp             CSST----TGGG---TTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTT-------------------------TTCCC
T ss_pred             cccc----cccC---CCCeEEEEeCCcchhhhceEEEECCCCceEEEEeC-------------------------Cceee
Confidence            7531    1111   25789999999999999999999999999977643                         45789


Q ss_pred             EeccchHHHHHHhCC-ceE--EEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCCCHHHHHHHHHc
Q 005766          161 VASDLVPTLEAKWGT-KLV--IKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKY  237 (678)
Q Consensus       161 ia~~~~~~l~~~~~~-~~~--i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~  237 (678)
                      +++++++.+....+. .++  ++.+++|++|.|+++.||++++++|| +.++||++++|||+||+|||||++||++|++|
T Consensus       263 ~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~pv-i~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~  341 (917)
T 1ffy_A          263 IAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFLDRESLV-INGDHVTTDAGTGCVHTAPGHGEDDYIVGQQY  341 (917)
T ss_dssp             CCHHHHHHHHTTTTCCSSCCCCCCCCCTTTCTTCCCBCCTTCCSBCC-CCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSS
T ss_pred             hHHHHHHHHHHhcCcccceeeeeeeeecccccCCEEECCCCCCeeeE-EeccccccCCCCceeEeCCCCCHHHHHHHHHc
Confidence            999999999888765 355  78899999999999999999999999 77999999999999999999999999999999


Q ss_pred             CCCcccccCCCCccccccCccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccchHHH
Q 005766          238 GLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFR  317 (678)
Q Consensus       238 ~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~~~~  317 (678)
                      |||++++||++|+|+++++.|.|++++ +|++.|++.|++.|.+++.+.++|+||||||||+|+|+|+|+|||++|++++
T Consensus       342 ~L~~~~~vd~~G~~~~~~~~~~G~~v~-~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr  420 (917)
T 1ffy_A          342 ELPVISPIDDKGVFTEEGGQFEGMFYD-KANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVR  420 (917)
T ss_dssp             SCCCCCCCCSSSCCCTTCSSCSSSCSS-HHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHH
T ss_pred             CCCeeeeECCCceeCCcccccCCcCHH-HHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHH
Confidence            999999999999999999999999996 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCcccCCC----------------------------------------------------------------
Q 005766          318 QAAMDAIGQVKWVPPQ----------------------------------------------------------------  333 (678)
Q Consensus       318 ~~~~~~i~~v~~~P~~----------------------------------------------------------------  333 (678)
                      +++++++++++|+|++                                                                
T Consensus       421 ~~~l~~i~~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~  500 (917)
T 1ffy_A          421 QDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREA  500 (917)
T ss_dssp             HHHHHHHHTSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCH
T ss_pred             HHHHHHHhcCcccCHHHHHHHHHHHhcCccceeeccCCcCcccceeeCCCCCEecCHHHHHHHHHHhhhcCCcccccCCH
Confidence            9999888777766543                                                                


Q ss_pred             --------------------------------------------------------------------------------
Q 005766          334 --------------------------------------------------------------------------------  333 (678)
Q Consensus       334 --------------------------------------------------------------------------------  333 (678)
                                                                                                      
T Consensus       501 ~~~~~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk  580 (917)
T 1ffy_A          501 KDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYK  580 (917)
T ss_dssp             HHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBS
T ss_pred             HHhcccccccccCCcccccccCCCcCeecCCCCCHHHHcCCchhcCCCceEEEEEecccccHHHHHHHHHHHhhCCCccc
Confidence                                                                                            


Q ss_pred             ----------------------------CCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhccc
Q 005766          334 ----------------------------EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLH  385 (678)
Q Consensus       334 ----------------------------~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~  385 (678)
                                                  ++++||||+||||++++++++|++|+++.+++..+++++|+|++||+++|+.
T Consensus       581 ~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~  660 (917)
T 1ffy_A          581 FLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNIN  660 (917)
T ss_dssp             EEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             ceeEeeeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHHhccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                                        2248999999999999999999999999999999999999999999999998


Q ss_pred             CCCCC-CccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHH
Q 005766          386 DWRVG-NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRS  464 (678)
Q Consensus       386 ~~~~~-~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~  464 (678)
                      +|.+. +.++...+..+|+|+++++++++++++++|++|+|++|++.+++|++++++|+|++.+|||+|+..+++..|++
T Consensus       661 ~~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~  740 (917)
T 1ffy_A          661 DFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRS  740 (917)
T ss_dssp             TCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHH
T ss_pred             ccCcccccCCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHHHHH
Confidence            87642 22333456789999999999999999999999999999999999998679999999999999998766777889


Q ss_pred             HHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHHHHH
Q 005766          465 CQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVN  544 (678)
Q Consensus       465 ~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~v~  544 (678)
                      ++++|+.+++.+++||+|||||+|||||++|+..       ..+||+++.||+.++  .+  ..+.+.|+.++++|..++
T Consensus       741 ~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~~-------~~~sv~~~~wP~~~~--~~--~~l~~~~~~~~~v~~~v~  809 (917)
T 1ffy_A          741 MQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHV-------KEESVHLADMPKVVE--VD--QALLDKWRTFMNLRDDVN  809 (917)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTC-------SSSSGGGSCCCCCCC--CC--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccHHHHHHHHHcccC-------CCCCeEecCCCCCCc--ch--HHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999742       136999999999875  23  567888999999999999


Q ss_pred             HHHHHHhccccCCCCceeEEEEEeCChh-HHHHHHHhhccCCChhhhhhheeeeceEEccCCCCCCccCCCCCCcccccC
Q 005766          545 KVLEVARTGKLIGSSLEAKVYLFTDDAS-LASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEG  623 (678)
Q Consensus       545 ~~ie~~r~~~~i~~~~~~~v~I~~~~~~-~~~~l~~~~~~~~~~~~L~~l~~vs~v~~~~~~~~~~~~~~~~~~~~~~~~  623 (678)
                      +.++.+|+++.|++++++.|+|+++++. ..+.|+.+       ++|+++++||+|++....+.    + +    +.   
T Consensus       810 ~~~~~~R~~~~i~~~l~~~v~i~~~~~~~~~~~l~~~-------~~l~~~~~~s~~~~~~~~~~----~-~----~~---  870 (917)
T 1ffy_A          810 RALETARNEKVIGKSLEAKVTIASNDKFNASEFLTSF-------DALHQLFIVSQVKVVDKLDD----Q-A----TA---  870 (917)
T ss_dssp             HHHHHHHHTTSCSSGGGEEEEEECCSSCCHHHHGGGC-------SCHHHHTTSSEEEECSCCCT----T-S----EE---
T ss_pred             HHHHHHHHhcCCCCCCceEEEEEeCChhhHHHHHhhH-------HHHHHHhcccceEEecCCcc----c-c----cc---
Confidence            9999999999999999999999876543 44544432       47999999999999642110    0 0    11   


Q ss_pred             CceEE-EEEEeCCCCCCCCCcccccCCCCCCCCCCCChhhHHHhcc
Q 005766          624 KDKVW-IGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAV  668 (678)
Q Consensus       624 ~~~~~-v~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~RC~~v~~~  668 (678)
                       .++. |.|.+++++||||||+|+++||.+++|++||+||++||.+
T Consensus       871 -~~~~~~~~~~~~~~kc~rcw~~~~~~~~~~~~~~~c~rc~~~~~~  915 (917)
T 1ffy_A          871 -YEHGDIVIEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVVKS  915 (917)
T ss_dssp             -ETTEEEEEEECSSEECTTTCCEESCCEEETTEEEECHHHHHHHHT
T ss_pred             -cccceEEEEeCCCCCCcccCCCccccccCCCCCCcCHhHHHHHHh
Confidence             1245 8999999999999999999999998999999999999974
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A Back     alignment and structure
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* Back     alignment and structure
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A* Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A Back     alignment and structure
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 678
d1ffya1273 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (Il 1e-54
d1ffya2194 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (Il 8e-29
d1udza_179 b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {T 5e-20
d1h3na2192 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS 4e-12
d1h3na3494 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas 6e-11
d1ivsa2218 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) 3e-07
d1wkaa1143 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) 3e-07
d1ivsa4425 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase 9e-06
d1h3na1128 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS 2e-05
d1ffya3450 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe 1e-04
d1ffya3450 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe 3e-04
d1ilea3452 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe 3e-04
d1ilea3452 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe 6e-04
d1pfva2350 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe 7e-04
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 273 Back     information, alignment and structure

class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

 Score =  186 bits (472), Expect = 1e-54
 Identities = 101/299 (33%), Positives = 151/299 (50%), Gaps = 30/299 (10%)

Query: 370 YRKLRGTLRYLLGNLHDWRVG-NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKI 428
           YRK+R TLR++LGN++D+    +SI   +L  +D+Y L +L     +   +YE++ +  I
Sbjct: 1   YRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNI 60

Query: 429 FQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLA 488
           +Q +Q FI V+LSNFY D  KD LY     S  RRS QTVL   L+ + +++APIL H A
Sbjct: 61  YQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTA 120

Query: 489 EDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLE 548
           E+VW + P         A           L +KWR             + LR +VN+ LE
Sbjct: 121 EEVWSHTPHVKEESVHLADMPKVVEVDQALLDKWR-----------TFMNLRDDVNRALE 169

Query: 549 VARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNG 608
            AR  K+IG SLEAKV + ++D   AS       A H    + ++ ++ +++   +    
Sbjct: 170 TARNEKVIGKSLEAKVTIASNDKFNASEFLTSFDALHQLFIVSQVKVVDKLDDQAT---- 225

Query: 609 LIRNIPYSGEYLVEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLA 667
                           +   I +  A+G KCERCWNYS  +G+  E   LC RC +V+ 
Sbjct: 226 --------------AYEHGDIVIEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVVK 270
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 194 Back     information, alignment and structure
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 179 Back     information, alignment and structure
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 192 Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 Back     information, alignment and structure
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 218 Back     information, alignment and structure
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 143 Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 Back     information, alignment and structure
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 128 Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query678
d1ffya1273 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 100.0
d1udza_179 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 100.0
d1ffya2194 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 100.0
d1wkaa1143 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 100.0
d1h3na2192 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 100.0
d1ilea1180 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 99.97
d1ivsa2218 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 99.95
d1ffya3450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.87
d1h3na3494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 99.8
d1h3na1128 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 99.79
d1rqga1210 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 99.64
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 99.5
d1pfva1162 Methionyl-tRNA synthetase (MetRS) {Escherichia col 99.4
d2d5ba1152 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 99.37
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 99.34
d1rqga2361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 98.57
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 97.76
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 97.67
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 96.32
d1rqga2361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 96.02
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 95.88
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 94.67
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.7e-53  Score=438.69  Aligned_cols=270  Identities=39%  Similarity=0.659  Sum_probs=235.2

Q ss_pred             HHHHHHHHHHHHhcccCCCCC-CccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhh
Q 005766          370 YRKLRGTLRYLLGNLHDWRVG-NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVA  448 (678)
Q Consensus       370 ~~ki~n~~rf~l~nl~~~~~~-~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~  448 (678)
                      ||||||++||++||+++|+|. ..++..++..+|+|||++++.++++++++|++|+|++|++.+++|++++||+|||+++
T Consensus         1 YRKirNt~RFlL~nl~~f~~~~~~~~~~~l~~lD~wiL~~l~~~~~~v~~~y~~y~f~~~~~~l~~F~~~~ls~~Y~~~~   80 (273)
T d1ffya1           1 YRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYG   80 (273)
T ss_dssp             HHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHH
T ss_pred             CchHHHHHHHHHHhccCCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhhhhccchHHHHhhc
Confidence            789999999999999999876 4566678999999999999999999999999999999999999999999999999999


Q ss_pred             hccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChh
Q 005766          449 KDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVG  528 (678)
Q Consensus       449 K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~  528 (678)
                      |||||+++.++..|+++|++|+++|..++++|||||||+|||+|++++..       ..++++...||...  +.+  ..
T Consensus        81 Kdrly~~~~ds~~r~~~~~~l~~il~~l~~~laPilPf~~Eei~~~~~~~-------~~~sv~~~~~p~~~--~~~--~~  149 (273)
T d1ffya1          81 KDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHV-------KEESVHLADMPKVV--EVD--QA  149 (273)
T ss_dssp             HHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTC-------SSSSGGGSCCCCCC--CCC--HH
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------ccchhhhccccccc--ccC--Hh
Confidence            99999999999999999999999999999999999999999999998753       24689999999864  233  56


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccCCCCceeEEEEEeCChh-HHHHHHHhhccCCChhhhhhheeeeceEEccCCCC
Q 005766          529 EIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDAS-LASRLREMCTAKHDADTLQRIFIISQVEVLPSTPN  607 (678)
Q Consensus       529 ~~~~~~~~~~lr~~v~~~ie~~r~~~~i~~~~~~~v~I~~~~~~-~~~~l~~~~~~~~~~~~L~~l~~vs~v~~~~~~~~  607 (678)
                      +.+.|+.++++|..++++++.+|+++.|++++++.|.|...++. ..+.+..       .++|.++++||+|.+....+.
T Consensus       150 l~~~~~~~~~ir~~v~~~ie~~R~~~~I~~sle~~v~i~~~~~~~~~~~l~~-------~~~l~~~~~vS~v~i~~~~~~  222 (273)
T d1ffya1         150 LLDKWRTFMNLRDDVNRALETARNEKVIGKSLEAKVTIASNDKFNASEFLTS-------FDALHQLFIVSQVKVVDKLDD  222 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCSSGGGEEEEEECCSSCCHHHHGGG-------CSCHHHHTTSSEEEECSCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEEeccHHHHHHHHHhh-------hhhhhhhhccccccccccccc
Confidence            77889999999999999999999999999999999999986543 2333322       257999999999999774322


Q ss_pred             CCccCCCCCCcccccCCceEEEEEEeCCCCCCCCCcccccCCCCCCCCCCCChhhHHHhccC
Q 005766          608 GLIRNIPYSGEYLVEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQ  669 (678)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~RC~~v~~~~  669 (678)
                      ..            ....++.|.|.+|+|.||||||+|++++|.++++++||+||.+||++.
T Consensus       223 ~~------------~~~~~~~I~v~~a~g~KC~RCW~~~~~v~~~~~~~~LC~RC~~vi~~l  272 (273)
T d1ffya1         223 QA------------TAYEHGDIVIEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVVKSL  272 (273)
T ss_dssp             TS------------EEETTEEEEEEECSSEECTTTCCEESCCEEETTEEEECHHHHHHHHTT
T ss_pred             cc------------cccCCceEEEEeCCCCcCcCCCCCCCCcCCCCCCCCcCHhHHHHHHHh
Confidence            11            011346799999999999999999999998888889999999999864
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure