Citrus Sinensis ID: 005769

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------68

MGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKEVQEDEENDEGDDEEAEDKEDDNEESEDDDEDSEGDECEETEEEFLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

cccccccccccccccccccccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccEEEccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHcHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccc

cccccccccHHHccccccccccccccccHHHHEHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccHHHcHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEEHHHHEEEccHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEccccccccccEEcccHHHccHHHHHHHHHHHHccHHHEcccccHHHHHHHHHHccHHHHHEccc

mgtpsncssvsskrkkgekskrnsmrstmgellvlpflsrfpipcdanashsriqKDYFGVLMAYGGLQEFLREQKSEFTANlvrsrvlplysvsVCLPYLVASANWILGELasclpedisADVYSSLLKALQMldkgdtscypvrASAAGAIVGLlendymppewypLLQVIVGRIGYEDEENSILFELLSSVVGaanenvadhIPYIVSSLVAAISkhmhpssepwpQVVERGFAALALMAQSWENFLREEVEldqssgkweSGQAAIAKAFSALLQQAWLThiqplecevsappsciddssMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWhaweetedlsvFDCIKEIVNLHSKYELKNFIvrqmppppappvppqsiIEGIGAFLSEAILqypsatwracscvhtllhvpkysfetegvkqSLTISFSCAAFSRfraiqskpsslwkPVVLAISSCYLCYPAVVEGILkkdedggfaLWGSALAFLcsssleprlslESEIKLAVLTLAKVVERLLglgnpgsslLQDCYASLMEAAVQLKEvqedeendegddeeaedkeddneesedddedsegdeceeTEEEFLERYAKAAVNLenntlveegdvedqehdielgsldevdQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

mgtpsncssvsskrkkgekskrnsmrstmGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKevqedeendegddeeaedkeddneesedddedsegdeCEETEEEFLERYAKAAVNLENNTLVEEGDVEDQEHDIelgsldevdQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

MGTPSNCssvsskrkkgekskRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMppppappvppQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCsssleprlsleseIKLAVLTLAKVVERllglgnpgssllQDCYASLMEAAVQLKEVQedeendegddeeaedkeddneesedddedsegdeceeteeeFLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

******************************ELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMH***EPWPQVVERGFAALALMAQSWENFLREEVELD***GKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIV***************IIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAV***************************************************YAKAAVNL*****************IELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLL**

*******************************LLVLPFLSRFPIPCD**ASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQS********************GQAAIAKAFSALLQQAWLTHIQP**********CIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFI*******************GIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLC*********LESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAV*******************************************TEEEFLERYAKAAVN**************QEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

*************************RSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAIS*********WPQVVERGFAALALMAQSWENFLREEV***********GQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLK********************************************FLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

**************************STMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLR*****DQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKEVQE*********************************CEETEEEFLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQxxxxxxxxxxxxxxxxxxxxxEDDNEESEDDDEDSEGDECEETEEEFLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		678
449441658		1085	PREDICTED: uncharacterized protein LOC10	0.982	0.613	0.586	0.0
356565000		1104	PREDICTED: uncharacterized protein LOC10	0.979	0.601	0.591	0.0
356521695		1094	PREDICTED: uncharacterized protein LOC10	0.948	0.587	0.588	0.0
449527855		595	PREDICTED: uncharacterized LOC101224751,	0.843	0.961	0.602	0.0
255556524		965	protein transporter, putative [Ricinus c	0.755	0.530	0.654	0.0
357479125		650	hypothetical protein MTR_4g123670 [Medic	0.902	0.941	0.580	0.0
297834642		1091	protein transporter [Arabidopsis lyrata	0.980	0.609	0.520	1e-178
145338625		1090	armadillo/beta-catenin-like repeats-cont	0.979	0.609	0.517	1e-176
110738031		1090	hypothetical protein [Arabidopsis thalia	0.979	0.609	0.517	1e-175
334185410		1093	armadillo/beta-catenin-like repeats-cont	0.979	0.607	0.513	1e-174

>gi\|449441658\|ref\|XP_004138599.1\| PREDICTED: uncharacterized protein LOC101205180 [Cucumis sativus]	Back alignment and taxonomy information

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/673 (58%), Positives = 519/673 (77%), Gaps = 7/673 (1%)

Query: 3    TPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVL 62
            T +N SS SSKRKKG K + N+  +TMGEL+VLPFL ++ IP DANAS + I   Y+GVL
Sbjct: 416  THTNGSSASSKRKKGNK-RTNNQCATMGELVVLPFLLKYSIPSDANASQTSIVNSYYGVL 474

Query: 63   MAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISA 122
            + YGGL +FLREQ+  + A L+R+RVLPLY+++ CLPYL+AS+NW+LGELASCLPE++ A
Sbjct: 475  IGYGGLLDFLREQQPGYVAFLIRTRVLPLYAMTTCLPYLIASSNWVLGELASCLPEEVCA 534

Query: 123  DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDE 182
            + YSSL+KAL M DK + S YPVR SAAGAI  LLENDY+PPEW PLLQV++G +G +DE
Sbjct: 535  ETYSSLVKALSMPDK-EVSFYPVRVSAAGAIAKLLENDYLPPEWLPLLQVVIGGVGQDDE 593

Query: 183  ENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALM 242
            ENSILF+LLSS+V A NEN+  HIP++V SLV AISK + P+ EPWPQVVE GFAAL++M
Sbjct: 594  ENSILFQLLSSIVEAGNENIGIHIPHVVLSLVGAISKSIPPNLEPWPQVVEHGFAALSVM 653

Query: 243  AQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDD 302
            AQSWENF+ E++E D S  +  S QA I+++FS+LLQ+   +     + E   PPSCID 
Sbjct: 654  AQSWENFILEKIEQDASYERSTSDQATISRSFSSLLQEK--SEEMDDDREFLPPPSCIDH 711

Query: 303  SSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHS 362
            SS LL+ I+LSV+E N I ELK+SEL+ VWADLI DWH+WEE+ED SVF+CI E+V L+S
Sbjct: 712  SSRLLQFIMLSVTESNTIVELKISELVSVWADLIADWHSWEESEDFSVFNCIMEVVRLNS 771

Query: 363  KYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKY 422
            KY LKNF V+  P PPAPPVP +SI+E IGAF+++AI +Y SATW+ACSC+H LL+VP Y
Sbjct: 772  KYALKNFFVKSAPSPPAPPVPRRSIVENIGAFINQAISKYTSATWKACSCIHVLLNVPNY 831

Query: 423  SFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDE 482
            SFE EGVK+SL ++FS  +FSRFR IQ KPS+LWKP++L+IS+CY+C+P  VE IL+K +
Sbjct: 832  SFEVEGVKESLVVTFSQTSFSRFREIQGKPSALWKPLLLSISTCYICHPDTVERILEKFD 891

Query: 483  DGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYAS 542
             GGF +W SAL +LCSSS  P LS ESEIKL V+T AKV+ER++ LG P    L  C+ S
Sbjct: 892  GGGFTVWVSALGYLCSSSFAPGLSAESEIKLIVMTFAKVLERIIELGKPRDDFLWKCFGS 951

Query: 543  LMEAAVQLKEVQEDEENDEGDDEEAEDKEDDNEESEDDDEDSEGDECEETEEEFLERYAK 602
            LMEA++QLKEV+E++E +  ++EE E+ + D  E ++D +  E    EETEEEFL+RYAK
Sbjct: 952  LMEASIQLKEVREEKEEESDENEEEEEDDGDETEDDEDSDADEL---EETEEEFLDRYAK 1008

Query: 603  AAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLIS 662
            AA+ LEN++ +EEG+VED++ DIELG  +EVD+ +++ + +E+YH +++QGQ   S L  
Sbjct: 1009 AAIELENSSFIEEGNVEDEDQDIELGCFEEVDEGRIIYTLLEKYHPILIQGQGWPSDLPM 1068

Query: 663  KFLKAYPQLTYLL 675
            +FL AYP  T  L
Sbjct: 1069 RFLNAYPDYTAFL 1081

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356565000\|ref\|XP_003550733.1\| PREDICTED: uncharacterized protein LOC100782006 [Glycine max]	Back alignment and taxonomy information

>gi\|356521695\|ref\|XP_003529487.1\| PREDICTED: uncharacterized protein LOC100783023 [Glycine max]	Back alignment and taxonomy information

>gi\|449527855\|ref\|XP_004170924.1\| PREDICTED: uncharacterized LOC101224751, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255556524\|ref\|XP_002519296.1\| protein transporter, putative [Ricinus communis] gi\|223541611\|gb\|EEF43160.1\| protein transporter, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|357479125\|ref\|XP_003609848.1\| hypothetical protein MTR_4g123670 [Medicago truncatula] gi\|355510903\|gb\|AES92045.1\| hypothetical protein MTR_4g123670 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297834642\|ref\|XP_002885203.1\| protein transporter [Arabidopsis lyrata subsp. lyrata] gi\|297331043\|gb\|EFH61462.1\| protein transporter [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|145338625\|ref\|NP_188360.3\| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gi\|332642419\|gb\|AEE75940.1\| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|110738031\|dbj\|BAF00950.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|334185410\|ref\|NP_001189916.1\| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gi\|332642420\|gb\|AEE75941.1\| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		678
pfam05764		238	pfam05764, YL1, YL1 nuclear protein	8e-06
COG5137		279	COG5137, COG5137, Histone chaperone involved in ge	2e-05
pfam11705		221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	6e-05
pfam03247		106	pfam03247, Prothymosin, Prothymosin/parathymosin f	8e-05
pfam09538		104	pfam09538, FYDLN_acid, Protein of unknown function	8e-05
pfam09026		101	pfam09026, Cenp-B_dimeris, Centromere protein B di	1e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	1e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	2e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	2e-04
pfam03344		715	pfam03344, Daxx, Daxx Family	2e-04
pfam04546		211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	2e-04
TIGR01651		600	TIGR01651, CobT, cobaltochelatase, CobT subunit	3e-04
PRK14891		131	PRK14891, PRK14891, 50S ribosomal protein L24e/unk	4e-04
pfam10446		449	pfam10446, DUF2457, Protein of unknown function (D	4e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	5e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	5e-04
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	5e-04
pfam04050		171	pfam04050, Upf2, Up-frameshift suppressor 2	6e-04
pfam05285		317	pfam05285, SDA1, SDA1	7e-04
pfam08553		794	pfam08553, VID27, VID27 cytoplasmic protein	7e-04
pfam12253		76	pfam12253, CAF1A, Chromatin assembly factor 1 subu	8e-04
pfam07133		164	pfam07133, Merozoite_SPAM, Merozoite surface prote	9e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	0.001
pfam04147		809	pfam04147, Nop14, Nop14-like family	0.001
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.001
pfam04050		171	pfam04050, Upf2, Up-frameshift suppressor 2	0.001
pfam04889		241	pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont	0.001
COG4547		620	COG4547, CobT, Cobalamin biosynthesis protein CobT	0.001
COG5137		279	COG5137, COG5137, Histone chaperone involved in ge	0.002
pfam09538		104	pfam09538, FYDLN_acid, Protein of unknown function	0.002
pfam04147		809	pfam04147, Nop14, Nop14-like family	0.002
pfam10446		449	pfam10446, DUF2457, Protein of unknown function (D	0.002
pfam07133		164	pfam07133, Merozoite_SPAM, Merozoite surface prote	0.002
COG3343		175	COG3343, RpoE, DNA-directed RNA polymerase, delta	0.002
PRK14160		211	PRK14160, PRK14160, heat shock protein GrpE; Provi	0.002
pfam09805		134	pfam09805, Nop25, Nucleolar protein 12 (25kDa)	0.002
PRK02363		129	PRK02363, PRK02363, DNA-directed RNA polymerase su	0.003
PHA02608		80	PHA02608, 67, prohead core protein; Provisional	0.003
PHA02608		80	PHA02608, 67, prohead core protein; Provisional	0.003
PTZ00248		319	PTZ00248, PTZ00248, eukaryotic translation initiat	0.003
pfam07423		214	pfam07423, DUF1510, Protein of unknown function (D	0.003
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.003
COG5271		4600	COG5271, MDN1, AAA ATPase containing von Willebran	0.003
pfam06213		282	pfam06213, CobT, Cobalamin biosynthesis protein Co	0.003
PRK14891		131	PRK14891, PRK14891, 50S ribosomal protein L24e/unk	0.004
COG3343		175	COG3343, RpoE, DNA-directed RNA polymerase, delta	0.004
pfam06213		282	pfam06213, CobT, Cobalamin biosynthesis protein Co	0.004
COG5406		1001	COG5406, COG5406, Nucleosome binding factor SPN, S	0.004
COG5406		1001	COG5406, COG5406, Nucleosome binding factor SPN, S	0.004
pfam09073		424	pfam09073, BUD22, BUD22	0.004
pfam04931		784	pfam04931, DNA_pol_phi, DNA polymerase phi	0.004
pfam03153		332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.004

>gnl\|CDD\|218737 pfam05764, YL1, YL1 nuclear protein	Back alignment and domain information

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 19/53 (35%), Positives = 34/53 (64%)

Query: 550 LKEVQEDEENDEGDDEEAEDKEDDNEESEDDDEDSEGDECEETEEEFLERYAK 602
            +E ++DEE +  ++EE E+ + D ++SEDD+ +S+ +E  E E +  ER  K
Sbjct: 34  FEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKK 86

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl\|CDD\|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31	Back alignment and domain information

>gnl\|CDD\|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family	Back alignment and domain information

>gnl\|CDD\|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)	Back alignment and domain information

>gnl\|CDD\|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation domain	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217503 pfam03344, Daxx, Daxx Family	Back alignment and domain information

>gnl\|CDD\|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region	Back alignment and domain information

>gnl\|CDD\|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit	Back alignment and domain information

>gnl\|CDD\|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain fusion protein; Provisional	Back alignment and domain information

>gnl\|CDD\|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|217861 pfam04050, Upf2, Up-frameshift suppressor 2	Back alignment and domain information

>gnl\|CDD\|218538 pfam05285, SDA1, SDA1	Back alignment and domain information

>gnl\|CDD\|219900 pfam08553, VID27, VID27 cytoplasmic protein	Back alignment and domain information

>gnl\|CDD\|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A	Back alignment and domain information

>gnl\|CDD\|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM)	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|217861 pfam04050, Upf2, Up-frameshift suppressor 2	Back alignment and domain information

>gnl\|CDD\|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein	Back alignment and domain information

>gnl\|CDD\|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)	Back alignment and domain information

>gnl\|CDD\|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM)	Back alignment and domain information

>gnl\|CDD\|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit [Transcription]	Back alignment and domain information

>gnl\|CDD\|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional	Back alignment and domain information

>gnl\|CDD\|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa)	Back alignment and domain information

>gnl\|CDD\|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta; Reviewed	Back alignment and domain information

>gnl\|CDD\|177433 PHA02608, 67, prohead core protein; Provisional	Back alignment and domain information

>gnl\|CDD\|177433 PHA02608, 67, prohead core protein; Provisional	Back alignment and domain information

>gnl\|CDD\|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional	Back alignment and domain information

>gnl\|CDD\|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT	Back alignment and domain information

>gnl\|CDD\|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain fusion protein; Provisional	Back alignment and domain information

>gnl\|CDD\|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit [Transcription]	Back alignment and domain information

>gnl\|CDD\|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT	Back alignment and domain information

>gnl\|CDD\|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|220102 pfam09073, BUD22, BUD22	Back alignment and domain information

>gnl\|CDD\|218333 pfam04931, DNA_pol_phi, DNA polymerase phi	Back alignment and domain information

>gnl\|CDD\|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		678
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	100.0
COG5656		970	SXM1 Importin, protein involved in nuclear import	100.0
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	99.07
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	99.05
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	98.94
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.92
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.75
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	97.42
PF04931		784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	96.69
PF10446		458	DUF2457: Protein of unknown function (DUF2457); In	96.67
PF04931		784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	96.18
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.16
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.92
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	95.43
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	95.42
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	95.31
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	94.85
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	93.97
PTZ00429		746	beta-adaptin; Provisional	93.86
PF10446		458	DUF2457: Protein of unknown function (DUF2457); In	93.5
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	93.4
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	93.35
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	93.19
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	91.72
PF09026		101	CENP-B_dimeris: Centromere protein B dimerisation	91.47
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	91.1
PRK09687		280	putative lyase; Provisional	91.0
KOG0943		3015	consensus Predicted ubiquitin-protein ligase/hyper	90.58
KOG1999		1024	consensus RNA polymerase II transcription elongati	88.84
PF09026		101	CENP-B_dimeris: Centromere protein B dimerisation	87.78
KOG1824		1233	consensus TATA-binding protein-interacting protein	87.54
PTZ00429		746	beta-adaptin; Provisional	87.18
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	85.67
PF06524		314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	84.73
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	83.33
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	82.86
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	81.96
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	81.27
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	81.26
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	80.38

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=2.9e-77  Score=677.93  Aligned_cols=525  Identities=20%  Similarity=0.245  Sum_probs=449.7

Q ss_pred             eccccccCCCCCCCCcchhhhhccchhhHhhHhhHHHHHHhhC--hHHHHHHHHhhcccCccccCcchhHHHhhHHHHhh
Q 005769           34 VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQK--SEFTANLVRSRVLPLYSVSVCLPYLVASANWILGE  111 (678)
Q Consensus        34 v~~~ls~f~~p~~~~~~~s~~~~~y~GaL~a~G~L~~~Lk~~~--k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~ge  111 (678)
                      |+..|.+|...+.    .-++.+.++|||+++|+|+++|.+.+  |.+++.|+++||||+|+  +++|||||||||++|+
T Consensus       415 ~~~Il~~~~~~~~----~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~--s~~g~Lrarac~vl~~  488 (1010)
T KOG1991|consen  415 IVDILTRYKEASP----PNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQ--SPYGYLRARACWVLSQ  488 (1010)
T ss_pred             HHHHHHhhcccCC----CccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhc--CchhHHHHHHHHHHHH
Confidence            4566788888774    44577788899999999999999987  69999999999999999  9999999999999999


Q ss_pred             hhc--cCCCCccHHHHHHHHHHHh-cccCCCCCcCcchhhhhHHHHHHHhcCCCCCC-hhhHHHHHHhhcCCccchhhHH
Q 005769          112 LAS--CLPEDISADVYSSLLKALQ-MLDKGDTSCYPVRASAAGAIVGLLENDYMPPE-WYPLLQVIVGRIGYEDEENSIL  187 (678)
Q Consensus       112 la~--~l~e~~~~~~~~sll~al~-dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~-~~pLLq~i~~~i~~~d~e~~~L  187 (678)
                      |++  |.++++..++|+.++++|. |.+      +||||.||.||++||.|+...++ +.|.+             |.++
T Consensus       489 ~~~~df~d~~~l~~ale~t~~~l~~d~~------lPV~VeAalALq~fI~~~~~~~e~~~~hv-------------p~~m  549 (1010)
T KOG1991|consen  489 FSSIDFKDPNNLSEALELTHNCLLNDNE------LPVRVEAALALQSFISNQEQADEKVSAHV-------------PPIM  549 (1010)
T ss_pred             HHhccCCChHHHHHHHHHHHHHhccCCc------CchhhHHHHHHHHHHhcchhhhhhHhhhh-------------hHHH
Confidence            997  9999999999999999999 555      99999999999999999998844 99999             9999


Q ss_pred             HHHHHHHHhhccccccccchHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhh
Q 005769          188 FELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQ  267 (678)
Q Consensus       188 ~qll~~~vE~g~E~va~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~~~~de~~d~~~~~~~a~G~  267 (678)
                      ..||++++|+++|++...+..||..|++++    +|++..+||++.      .+|+|+.+.++++++.++++. ++|+||
T Consensus       550 q~lL~L~ne~End~Lt~vme~iV~~fseEl----sPfA~eL~q~La------~~F~k~l~~~~~~~~~~ddk~-iaA~Gi  618 (1010)
T KOG1991|consen  550 QELLKLSNEVENDDLTNVMEKIVCKFSEEL----SPFAVELCQNLA------ETFLKVLQTSEDEDESDDDKA-IAASGI  618 (1010)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHHhh----chhHHHHHHHHH------HHHHHHHhccCCCCccchHHH-HHHHHH
Confidence            999999999999999999999999998888    999999999998      889999999888777777777 999999


Q ss_pred             hHHHHHHHHHHHHhhcccC--CCCccccCCCC--cccccHHHHHH---HHHHHccccchhhhhhHHHHHHHHHHHHhhhh
Q 005769          268 AAIAKAFSALLQQAWLTHI--QPLECEVSAPP--SCIDDSSMLLR---SIILSVSERNVIEELKLSELLLVWADLIGDWH  340 (678)
Q Consensus       268 ~~~~~a~stlLq~aw~~P~--~~~E~~~~P~~--~~~~D~s~lle---~il~~~t~~~~~~~~kis~L~~vwa~~ia~w~  340 (678)
                         ++|++|+|.++...|.  .++|++++|++  .+.+|.+++|+   +|+.++|++...|++   +||.+|++++....
T Consensus       619 ---L~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp---~mW~ll~li~e~~~  692 (1010)
T KOG1991|consen  619 ---LRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISP---IMWGLLELILEVFQ  692 (1010)
T ss_pred             ---HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCH---HHHHHHHHHHHHHh
Confidence               6999999999999994  99999999996  99999999999   777888999888999   99999999999999


Q ss_pred             hhhhccccchhhhHhhh-hcccc--cccccceeeccCCCCCCCCCCchhHHhhHHHHHHHHHh--cCccc-hhhhhhhHH
Q 005769          341 AWEETEDLSVFDCIKEI-VNLHS--KYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAIL--QYPSA-TWRACSCVH  414 (678)
Q Consensus       341 ~Wee~ed~~~fD~i~e~-V~l~~--s~g~~~F~~~~~~~~~~~p~~~~s~ie~l~~fvs~ai~--~~p~a-~~rACkl~h  414 (678)
                      .|.       +||+.+| +++||  .||+..|..        +|.    |++.++.+++++++  +..++ +..|||+++
T Consensus       693 ~~~-------~dyf~d~~~~l~N~vt~g~~~~~s--------~~~----y~~il~~i~~~~l~~e~~~D~d~~~a~kLle  753 (1010)
T KOG1991|consen  693 DDG-------IDYFTDMMPALHNYVTYGTPSLLS--------NPD----YLQILLEIIKKVLTSENGEDSDCESACKLLE  753 (1010)
T ss_pred             hhh-------HHHHHHHHHHHhhheeeCchhhhc--------cch----HHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Confidence            999       9999999 88898  999998885        664    99999999999999  34444 888999999


Q ss_pred             HHhhCCCCCcccchhhhhhHHHHHHHHHhhhhhccCCCCCchhH-HHHHHhhhhccChHHHHHHHhhcCCC--chhhHHH
Q 005769          415 TLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKP-VVLAISSCYLCYPAVVEGILKKDEDG--GFALWGS  491 (678)
Q Consensus       415 ~lL~~~~~s~~~eg~~d~~i~~f~~aA~~rl~~~~s~~~~l~Kp-LilvIssc~~ynP~lv~qiLek~~~~--~F~~W~s  491 (678)
                      .++++|+      |.+|++++.|+++|.+|+++.  ++.+..|. +++||.||+||||.+++|+|++.+-+  .|++||+
T Consensus       754 ~iiL~~k------g~~dq~iplf~~~a~~~l~~~--~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~  825 (1010)
T KOG1991|consen  754 VIILNCK------GLLDQYIPLFLELALSRLTRE--VETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQ  825 (1010)
T ss_pred             HHHHHhc------CcHhhHhHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHH
Confidence            9999999      999999999999999999874  55566665 99999999999999999999999998  7999999


Q ss_pred             HHHhhhcCCCCCCCchhhhhHHHHHHHHHHHHHHhccCCC---CCcchhhHHHHHHHHHHHhhhhhhccccCCCCccccc
Q 005769          492 ALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNP---GSSLLQDCYASLMEAAVQLKEVQEDEENDEGDDEEAE  568 (678)
Q Consensus       492 aLa~~~~s~~~~~l~~ese~Kl~vl~L~~vie~Llsl~~~---~~~~l~~c~~slle~~~~lke~~ee~~~d~~~D~e~~  568 (678)
                      .+.+.++         +|+||||||||+++|    +++..   +...+++.+.++++++..||+.-.+..+.+++|++++
T Consensus       826 ~~~~~~~---------~HDkKlcvL~l~tli----~l~~~~~~~~e~l~~l~~~lv~L~~~Lp~ala~ra~~~ee~~~e~  892 (1010)
T KOG1991|consen  826 FINQFKK---------VHDKKLCVLGLLTLI----SLGQDPQLPSEVLGQLGPALVELLLSLPEALAERAQVEEEDSEEG  892 (1010)
T ss_pred             HHHHHHh---------hhhHHHHHHHHHHHH----hccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            9999433         999999999999888    55433   5468899999999999999999998887765554444


Q ss_pred             CcCCCCCCCCCCCCCCCccCcccchHHHHHHHHHHHhhhhcCcccCCCCCc---ccchhccc-cCccccchhhHHHHhh
Q 005769          569 DKEDDNEESEDDDEDSEGDECEETEEEFLERYAKAAVNLENNTLVEEGDVE---DQEHDIEL-GSLDEVDQLKVVASSI  643 (678)
Q Consensus       569 ~~~dddeD~dddd~~~ddde~eE~e~e~Ler~a~~A~~le~g~~~ee~~~d---D~~~d~el-~~LdevD~~~~Vls~~  643 (678)
                      +.++++++++-   .+|+||.++++.+|.++|+..+..-+...+++||.|+   |+++|+.| ++||.||+++.+-+.+
T Consensus       893 ~~~~~~~~e~~---~~d~dD~d~~d~d~~~~~~~~~~~~~~~~~~ddd~d~~~~~~~ed~~f~t~LD~VD~f~~f~~~i  968 (1010)
T KOG1991|consen  893 EEEDDDEEEDF---IDDEDDIDEDDQDYLDEYGELALEKEDSLDDDDDFDEDELDLEEDELFETPLDQVDPFQLFKEAI  968 (1010)
T ss_pred             cCCCCcchhhc---cCccccccccchhHHHhhccccccccccccccccccchhccccccccccCcccccchHHHHHHHH
Confidence            44333222221   2244444556668888888777664433333333333   34567777 7999999998655554

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar	Back alignment and domain information

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins	Back alignment and domain information

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]	Back alignment and domain information

>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		678
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	1e-04
3cx5_F		146	Cytochrome B-C1 complex subunit 6; complex III, el	2e-04
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	4e-04
2ayu_A		417	Nucleosome assembly protein; histone chaperone; 3.	8e-04
2ayu_A		417	Nucleosome assembly protein; histone chaperone; 3.	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 68.0 bits (165), Expect = 8e-12
 Identities = 86/674 (12%), Positives = 172/674 (25%), Gaps = 196/674 (29%)

Query: 68  LQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSS 127
           L  F       F    V+     + S            + I+        + +S  +   
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEI--------DHIIMS-----KDAVSGTLR-- 66

Query: 128 LLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSIL 187
           L   L  L K +             +  +L  +Y   ++      ++  I  E  + S++
Sbjct: 67  LFWTL--LSKQEEM-------VQKFVEEVLRINY---KF------LMSPIKTEQRQPSMM 108

Query: 188 FELLSSVVGAANENVADHIPYIVS--SLVAAISKHMHPSSEPWPQVVERGFA-----ALA 240
             +          +      Y VS       + + +     P   V+  G        +A
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAKNVLIDGVLGSGKTWVA 167

Query: 241 LMAQSWENFLREEVELDQSSGK--WES-GQAAIAKAFSALLQQAWLTHIQPLECEVSAPP 297
           L                +   K  W +       +    +LQ+     I P     S   
Sbjct: 168 LDV------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY-QIDPNWTSRS--- 217

Query: 298 SCIDDSSMLLRSIILSVSE--RNVIEELKLSELLLVWADLIGDWHAWE------------ 343
               D S  ++  I S+    R +++       LLV  ++    +A              
Sbjct: 218 ----DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---QNAKAWNAFNLSCKILL 270

Query: 344 ETEDLSVFDCIKEIVNLH----------SKYELKNFIVR------QMPPPPAPPVPPQSI 387
            T    V D +      H          +  E+K+ +++      Q  P       P+  
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-R 329

Query: 388 IEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFS---- 443
           +  I   + + +     ATW          +    + +    K +  I  S         
Sbjct: 330 LSIIAESIRDGL-----ATWD---------NWKHVNCD----KLTTIIESSLNVLEPAEY 371

Query: 444 --RFRAIQSKPSSLWKPV-VLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSS 500
              F  +   P S   P  +L++                        +W           
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSL------------------------IWFD------VIK 401

Query: 501 LEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKE-----VQE 555
            +  + +    KL   +L +            +  +   Y  L              V  
Sbjct: 402 SDVMVVVN---KLHKYSLVE------KQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 556 DEENDEGDDEEAEDKEDDN----------EESEDDDEDSEGDECEETEEEFLE-RYAKAA 604
                  D ++      D           +  E  +              FL+ R+ +  
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM------TLFRMVFLDFRFLEQK 506

Query: 605 VNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKF 664
           +  ++      G +           L+ + QLK        Y   I        +L++  
Sbjct: 507 IRHDSTAWNASGSI-----------LNTLQQLK-------FYKPYICDNDPKYERLVNAI 548

Query: 665 LKAYPQLTYLLLHS 678
           L   P++   L+ S
Sbjct: 549 LDFLPKIEENLICS 562

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F* Length = 146	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960	Back alignment and structure

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417	Back alignment and structure

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		678
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	99.92
2x1g_F		971	Cadmus; transport protein, developmental protein,	98.79
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	98.74
2x19_B		963	Importin-13; nuclear transport, protein transport;	98.47
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.0
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	97.98
1qgr_A		876	Protein (importin beta subunit); transport recepto	97.87
1qgr_A		876	Protein (importin beta subunit); transport recepto	97.6
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	96.98
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	96.92
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	96.82
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.61
2x19_B		963	Importin-13; nuclear transport, protein transport;	95.84
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	95.77
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	95.49
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	95.24
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	94.87
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	94.84
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	94.69
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	94.41
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	94.09
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	94.08
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	93.98
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	93.74
3tj1_A		649	RNA polymerase I-specific transcription initiatio	93.59
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	93.48
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	93.35
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	93.2
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	93.11
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	93.03
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	92.6
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	91.64
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	90.17
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	88.78
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	87.61
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	87.47
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	86.65
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	86.6
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	86.59
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	86.47
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	86.16
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	85.63
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	85.19
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	85.03
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	83.91
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	83.85
2x1g_F		971	Cadmus; transport protein, developmental protein,	82.6
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	82.4
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	82.1
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	81.47
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	81.13
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	80.97
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	80.4

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

Probab=99.92  E-value=2.3e-23  Score=240.95  Aligned_cols=404  Identities=13%  Similarity=0.086  Sum_probs=266.8

Q ss_pred             hhccchhhHhhHhhHHHHHHhhC---hH-----HHHHHHHhhcccCccccCc---chhHHHhhHHHHhhhhccCCCCccH
Q 005769           54 IQKDYFGVLMAYGGLQEFLREQK---SE-----FTANLVRSRVLPLYSVSVC---LPYLVASANWILGELASCLPEDISA  122 (678)
Q Consensus        54 ~~~~y~GaL~a~G~L~~~Lk~~~---k~-----~~~~l~~~rV~P~~~~~~~---sp~LrA~A~Wv~gela~~l~e~~~~  122 (678)
                      +.+.+.|||+|+|++++.+...+   +.     .+..++.++|+|.+.  .+   .|+||++|||++|+|+..++++...
T Consensus       418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~--~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~  495 (960)
T 1wa5_C          418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLT--SNNIPHIILRVDAIKYIYTFRNQLTKAQLI  495 (960)
T ss_dssp             CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHH--CSSCSCHHHHHHHHHHHHHTGGGSCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhc--CCCCCCceehHHHHHHHHHHHhhCCHHHHH
Confidence            35667899999999987643211   11     677888899999887  34   8999999999999999977767788


Q ss_pred             HHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCC-------------CCCChhhHHHHHHhhcCCc--------c
Q 005769          123 DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY-------------MPPEWYPLLQVIVGRIGYE--------D  181 (678)
Q Consensus       123 ~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~-------------~pp~~~pLLq~i~~~i~~~--------d  181 (678)
                      .++..++++|.+++      +|||+.|+.||..|+++.+             ..|-+.+||+.++..+...        +
T Consensus       496 ~~l~~l~~~L~d~~------~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~  569 (960)
T 1wa5_C          496 ELMPILATFLQTDE------YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAE  569 (960)
T ss_dssp             HHHHHHHHHTTCSC------HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTS
T ss_pred             HHHHHHHHHhCCCC------hhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccc
Confidence            88888888888765      9999999999999998632             3377888888888888765        4


Q ss_pred             chhhHHHHHHHHHHhhccccccccchHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhhhhhhhhhccccch
Q 005769          182 EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSG  261 (678)
Q Consensus       182 ~e~~~L~qll~~~vE~g~E~va~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~~~~de~~d~~~~~  261 (678)
                      +|  .+...+..++++..|++..+++.++..+...+.+.+....+  ++.....|++++++.++   ..++       . 
T Consensus       570 ~e--~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~--~~~~~~~~e~l~~l~~~---~~~~-------~-  634 (960)
T 1wa5_C          570 NE--FLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSN--PRFTHYTFESIGAILNY---TQRQ-------N-  634 (960)
T ss_dssp             CH--HHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCC--HHHHHHHHHHHHHHHHT---SCGG-------G-
T ss_pred             cH--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHHHhc---CCcc-------h-
Confidence            44  77888888888877877777766766665544332221112  33334456666666654   1110       0 


Q ss_pred             hhhhhhhHHHHHHHHHHHHhhcccCCCCccccCCCCcccccHHHHHHHHHHHccccchhhhhhHHHHHHHHHHHH--hhh
Q 005769          262 KWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI--GDW  339 (678)
Q Consensus       262 ~~a~G~~~~~~a~stlLq~aw~~P~~~~E~~~~P~~~~~~D~s~lle~il~~~t~~~~~~~~kis~L~~vwa~~i--a~w  339 (678)
                      .... +-.+...|..+|+.-           .   ..+..++..++..++...    ..++.   .||.+|+.++  ..|
T Consensus       635 ~~~~-~~~~~p~~~~iL~~~-----------~---~~~~~~~~~i~~~l~~~~----~~~~~---~~~~~~~~l~~~~~~  692 (960)
T 1wa5_C          635 LPLL-VDSMMPTFLTVFSED-----------I---QEFIPYVFQIIAFVVEQS----ATIPE---SIKPLAQPLLAPNVW  692 (960)
T ss_dssp             HHHH-HHHHHHHHHHHHHTT-----------C---TTTHHHHHHHHHHHHHHC----SSCCT---TTGGGHHHHTSGGGG
T ss_pred             HHHH-HHHHHHHHHHHHHhh-----------h---HhhHHHHHHHHHHHHHhc----cCCCH---HHHHHHHHHcCHHHh
Confidence            0011 111223333333210           0   012233444444444444    22233   5788888888  777


Q ss_pred             hhhhhccccchhhhHhhhhcccc---cccccceeeccCCCCCCCCCCchhHHhhHHHHHHHHHh-cCccchhhhhhhHHH
Q 005769          340 HAWEETEDLSVFDCIKEIVNLHS---KYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAIL-QYPSATWRACSCVHT  415 (678)
Q Consensus       340 ~~Wee~ed~~~fD~i~e~V~l~~---s~g~~~F~~~~~~~~~~~p~~~~s~ie~l~~fvs~ai~-~~p~a~~rACkl~h~  415 (678)
                      ....         ++..++++..   ++|.++|..                ++.+..++.+.+. ..  ....||++...
T Consensus       693 ~~~~---------~~~~~~~~L~~~~~~~~~~~~~----------------~~~~l~~~~~~~~~~~--~~~~a~~ll~~  745 (960)
T 1wa5_C          693 ELKG---------NIPAVTRLLKSFIKTDSSIFPD----------------LVPVLGIFQRLIASKA--YEVHGFDLLEH  745 (960)
T ss_dssp             CCTT---------THHHHHHHHHHHHHHHGGGCSC----------------SHHHHHHHHHHHTCTT--THHHHHHHHHH
T ss_pred             cCCC---------CchhHHHHHHHHHHhChHHHHH----------------HHHHHHHHHHHhCCCc--ccchHHHHHHH
Confidence            6531         5566655443   234444431                3556666777775 22  23789999999


Q ss_pred             HhhCCCCCcccchh-hhhhHHHHHHHHHhhhhhccCCCCCchhH-HHHHHhhhhccChHHHHHHHhhcCCCch-h----h
Q 005769          416 LLHVPKYSFETEGV-KQSLTISFSCAAFSRFRAIQSKPSSLWKP-VVLAISSCYLCYPAVVEGILKKDEDGGF-A----L  488 (678)
Q Consensus       416 lL~~~~~s~~~eg~-~d~~i~~f~~aA~~rl~~~~s~~~~l~Kp-LilvIssc~~ynP~lv~qiLek~~~~~F-~----~  488 (678)
                      ++.++.      |. .+.++++++.+++.|+..  ++..++.|. ++.+...|++|+|+.+.++|++-+.+.| .    .
T Consensus       746 i~~~~~------~~~~~~yl~~i~~~l~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~  817 (960)
T 1wa5_C          746 IMLLID------MNRLRPYIKQIAVLLLQRLQN--SKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNF  817 (960)
T ss_dssp             HHHHSC------HHHHGGGHHHHHHHHHHGGGS--SCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHT
T ss_pred             HHHHCC------HHHHHHHHHHHHHHHHHHHhh--CCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHH
Confidence            999888      77 999999999999999976  233446645 7888889999999999999998876633 3    6


Q ss_pred             HHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHh
Q 005769          489 WGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQL  550 (678)
Q Consensus       489 W~saLa~~~~s~~~~~l~~ese~Kl~vl~L~~vie~Llsl~~~~~~~l~~c~~slle~~~~l  550 (678)
                      |...+..         +.+.+|||++++||++++    ..+.-.+..+...+..+++.++.+
T Consensus       818 w~~~~~~---------~~~~~erk~~~~gl~~ll----~~~~~~~~~~~~~~~~~~~~i~~l  866 (960)
T 1wa5_C          818 IITTLPT---------IGNLLDRKIALIGVLNMV----INGQFFQSKYPTLISSTMNSIIET  866 (960)
T ss_dssp             HHHHGGG---------CCSHHHHHHHHHHHHHHH----HSCHHHHHHCGGGHHHHHHHHHHH
T ss_pred             hccchhh---------ccCHHHHHHHHHHHHHHH----hcccccchhHHHHHHHHHHHHHHH
Confidence            7776654         445899999999999777    544111123334455555555554

PyMOL of 1wa5

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		678
d1wa5c_		959	a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc	5e-05

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 64/567 (11%), Positives = 142/567 (25%), Gaps = 64/567 (11%)

Query: 34  VLPFLSRFPIPCDANASHSRIQKD----YFGVLMAYGGLQEFLREQKS---EFTANLVRS 86
            L  +  F     ++ S +   KD     F  L   G +        +          + 
Sbjct: 400 FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKE 459

Query: 87  RVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVR 146
               L S ++    L   A   +    + L +    ++   L   LQ      T  Y V 
Sbjct: 460 IAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQ------TDEYVVY 513

Query: 147 ASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHI 206
             AA  I  +L           +          E    +++  +L            + +
Sbjct: 514 TYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFL 573

Query: 207 PYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESG 266
              +  ++      + P               LA   +      +       +   +ES 
Sbjct: 574 MRSIFRVLQTSEDSIQPLFPQ----------LLAQFIEIVTIMAKNPSNPRFTHYTFESI 623

Query: 267 QAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLS 326
            A +       L     + +       S            + + ++  S         L+
Sbjct: 624 GAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLA 683

Query: 327 ELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQS 386
           + LL                   +   I  +  L     LK+FI               S
Sbjct: 684 QPLL-------------APNVWELKGNIPAVTRL-----LKSFIKTD-----------SS 714

Query: 387 IIEGIGAFLS--EAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSR 444
           I   +   L   + ++   +        +  ++       +   ++  +          R
Sbjct: 715 IFPDLVPVLGIFQRLIASKAYEVHGFDLLEHIML----LIDMNRLRPYIKQIAV-LLLQR 769

Query: 445 FRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPR 504
            +  +     + K  V             +   + + +DG F                P 
Sbjct: 770 LQNSK-TERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTL----PT 824

Query: 505 LSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKEVQEDEENDEGDD 564
           +    + K+A++ +  +V       +   +L+     S++E A          +  + D+
Sbjct: 825 IGNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIANLKNDYVDLDN 884

Query: 565 EEAEDKEDDNEESEDDDEDSEGDECEE 591
            E       +        +   D   E
Sbjct: 885 LEEISTFGSHFSKLVSISEKPFDPLPE 911

PyMOL of d1wa5c_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		678
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.75
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.94
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.62
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.41
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.87
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	95.98
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	95.61
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	94.85
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	93.75
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	92.81
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	91.92
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	91.57
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	91.25
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	91.12
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	90.37
d1b3ua_		588	Constant regulatory domain of protein phosphatase	89.82
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	89.57
d1b3ua_		588	Constant regulatory domain of protein phosphatase	88.31
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	88.12

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=7.6e-17  Score=177.04  Aligned_cols=383  Identities=12%  Similarity=0.106  Sum_probs=234.8

Q ss_pred             chhhHhhHhhHH------HHHHhhC--hHHHHHHHHhhcccCccc-cCcchhHHHhhHHHHhhhhccCCCCccHHHHHHH
Q 005769           58 YFGVLMAYGGLQ------EFLREQK--SEFTANLVRSRVLPLYSV-SVCLPYLVASANWILGELASCLPEDISADVYSSL  128 (678)
Q Consensus        58 y~GaL~a~G~L~------~~Lk~~~--k~~~~~l~~~rV~P~~~~-~~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sl  128 (678)
                      ...++.++|++.      ..+.+..  ...+..++.++|.|.+.. ..+.+++|++|+|++|+|+...+......++..+
T Consensus       422 ~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l  501 (959)
T d1wa5c_         422 KDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPIL  501 (959)
T ss_dssp             HHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            445566666554      3333222  234677788999998763 3456799999999999999988877788889999


Q ss_pred             HHHHhcccCCCCCcCcchhhhhHHHHHHHhcCC-------------CCCChhhHHHHHHhhcCCccch------hhHHHH
Q 005769          129 LKALQMLDKGDTSCYPVRASAAGAIVGLLENDY-------------MPPEWYPLLQVIVGRIGYEDEE------NSILFE  189 (678)
Q Consensus       129 l~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~-------------~pp~~~pLLq~i~~~i~~~d~e------~~~L~q  189 (678)
                      ++.|.+++      .+||+.|+.||..+++...             .-|-..++++.++..+......      ...+..
T Consensus       502 ~~~L~~~~------~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~  575 (959)
T d1wa5c_         502 ATFLQTDE------YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMR  575 (959)
T ss_dssp             HHHTTCSC------HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHH
T ss_pred             HHHhCCCc------hhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence            98888776      9999999999999987432             2366777777777776544421      123667


Q ss_pred             HHHHHHhhccccccccchHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhhhH
Q 005769          190 LLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAA  269 (678)
Q Consensus       190 ll~~~vE~g~E~va~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~~~~de~~d~~~~~~~a~G~~~  269 (678)
                      .+..+++.-.|.+..+.+.++..|...+.+... .+. =++.+...|+.++.+.++-.   +        . ..    ..
T Consensus       576 ~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~-~~~~~~~~~e~l~~l~~~~~---~--------~-~~----~~  637 (959)
T d1wa5c_         576 SIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAK-NPS-NPRFTHYTFESIGAILNYTQ---R--------Q-NL----PL  637 (959)
T ss_dssp             HHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTT-SCC-CHHHHHHHHHHHHHHHHTSC---G--------G-GH----HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Ccc-chHHHHHHHHHHHHHHHhcC---c--------h-hH----HH
Confidence            777777887777777777777666554433222 211 13445555555555554211   1        0 00    11


Q ss_pred             HHHHHHHHHHHhhcccCCCCccccCCCCcccccHHHHHHHHHHHccccchhhhhhHHHHHHHHHHHHhhhhhhhhccccc
Q 005769          270 IAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLS  349 (678)
Q Consensus       270 ~~~a~stlLq~aw~~P~~~~E~~~~P~~~~~~D~s~lle~il~~~t~~~~~~~~kis~L~~vwa~~ia~w~~Wee~ed~~  349 (678)
                      +...+-.++..++....          .....++..++..++++....++.       +|.+++.++.. ..|.      
T Consensus       638 l~~~l~p~i~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~~~-------~~~l~~~l~~~-~~~~------  693 (959)
T d1wa5c_         638 LVDSMMPTFLTVFSEDI----------QEFIPYVFQIIAFVVEQSATIPES-------IKPLAQPLLAP-NVWE------  693 (959)
T ss_dssp             HHHHHHHHHHHHHHTTC----------TTTHHHHHHHHHHHHHHCSSCCTT-------TGGGHHHHTSG-GGGC------
T ss_pred             HHHHHHHHHHHHHhccc----------hhHHHHHHHHHHHHHHhCCCccHH-------HHHHHHHHhhH-HHHH------
Confidence            12222233333332111          123456667777777766544432       33333443322 1122      


Q ss_pred             hhhhHhhhhcccc---cccccceeeccCCCCCCCCCCchhHHhhHHHHHHHHHhcCccchhhhhhhHHHHhhCCCCCccc
Q 005769          350 VFDCIKEIVNLHS---KYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFET  426 (678)
Q Consensus       350 ~fD~i~e~V~l~~---s~g~~~F~~~~~~~~~~~p~~~~s~ie~l~~fvs~ai~~~p~a~~rACkl~h~lL~~~~~s~~~  426 (678)
                      ..+.+..++.+.+   .+|...|..                ...+...+...+. .+...-.|.+++..+++++.     
T Consensus       694 ~~~~~~~~~~~l~~~~~~~~~~~~~----------------~~~~l~~~~~~l~-~~~~~~~~~~ll~~ii~~~~-----  751 (959)
T d1wa5c_         694 LKGNIPAVTRLLKSFIKTDSSIFPD----------------LVPVLGIFQRLIA-SKAYEVHGFDLLEHIMLLID-----  751 (959)
T ss_dssp             CTTTHHHHHHHHHHHHHHHGGGCSC----------------SHHHHHHHHHHHT-CTTTHHHHHHHHHHHHHHSC-----
T ss_pred             HhhhHHHHHHHHHHHHHhCHHhhcc----------------hHHHHHHHHHHHC-CCcchHHHHHHHHHHHHHCc-----
Confidence            2334444433333   344443421                1234555555553 34444557889999998886     


Q ss_pred             ch-hhhhhHHHHHHHHHhhhhhccCCCCCchhH-HHHHHhhhhccChHHHHHHHhhcCCCchhh-----HHHHHHhhhcC
Q 005769          427 EG-VKQSLTISFSCAAFSRFRAIQSKPSSLWKP-VVLAISSCYLCYPAVVEGILKKDEDGGFAL-----WGSALAFLCSS  499 (678)
Q Consensus       427 eg-~~d~~i~~f~~aA~~rl~~~~s~~~~l~Kp-LilvIssc~~ynP~lv~qiLek~~~~~F~~-----W~saLa~~~~s  499 (678)
                       + ..+.+++.++++++.|+..-  ....+.+- ++.+...|++|+|+.+.++|+.--.+.+..     |....      
T Consensus       752 -~~~~~~~l~~i~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------  822 (959)
T d1wa5c_         752 -MNRLRPYIKQIAVLLLQRLQNS--KTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTL------  822 (959)
T ss_dssp             -HHHHGGGHHHHHHHHHHGGGSS--CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHG------
T ss_pred             -hhhhHhHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhchhhHHHHHHHHHHhcc------
Confidence             4 46889999999999999761  22223333 666677788899999999999866554333     43332      


Q ss_pred             CCCCCCchhhhhHHHHHHHHHHH
Q 005769          500 SLEPRLSLESEIKLAVLTLAKVV  522 (678)
Q Consensus       500 ~~~~~l~~ese~Kl~vl~L~~vi  522 (678)
                         ..+++.+++|+++||+++++
T Consensus       823 ---~~~~~~~~~k~~~l~l~~ll  842 (959)
T d1wa5c_         823 ---PTIGNLLDRKIALIGVLNMV  842 (959)
T ss_dssp             ---GGCCSHHHHHHHHHHHHHHH
T ss_pred             ---cccCCHHHHHHHHHHHHHHh
Confidence               34566899999999999887

PyMOL of d1wa5c_

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure